HHsearch alignment for GI: 254780684 and conserved domain: PRK09376
>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=100.00 E-value=1.3e-36 Score=285.97 Aligned_cols=297 Identities=24% Similarity=0.309 Sum_probs=224.2
Q ss_pred CCEEEEEECC-CCCCCCCCCEEEECC-CCEEECCHHH--HHHHHHHHHHH---------CCCCCCCCCCCEEEEECCCCC
Q ss_conf 9979999804-855746788899728-8555246668--86543077630---------478877755530121125433
Q gi|254780684|r 67 LDIVYICPVG-IGEEISLGDLVFHWG-RFRISPSACW--CGRVINALGKP---------IDGDDSLGKGDLSMEIMSKVP 133 (438)
Q Consensus 67 ~~~~~l~~~~-~~~gI~~G~~V~~~g-~~~i~vG~~l--LGRViD~lG~P---------lDg~~~l~~~~~~~~i~~~~p 133 (438)
T Consensus 77 ~dDiYVS~sqIrrf~LR~GD~V~G~vR~pk--e~Ery~aLl~V~~VNg~~pe~~~~r~~F~~LTPi-------------- 140 (416)
T PRK09376 77 PDDIYVSPSQIRRFNLRTGDTVEGKIRPPK--EGERYFALLKVETVNGEDPEKARNRILFENLTPL-------------- 140 (416)
T ss_pred CCCEEECHHHHHHHCCCCCCEEEEEEECCC--CCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCC--------------
T ss_conf 888336899999809988888999886898--8887743377632289398996573540148777--------------
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 30001331-10011124587520022358503752667889999999987----40789838993124652238899998
Q gi|254780684|r 134 PAMNRQRV-EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA----RSDCFDKVIISLVGERGREVREFIED 208 (438)
Q Consensus 134 ~p~~R~~i-~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~alIGeR~rev~efi~~ 208 (438)
T Consensus 141 ~P~erl~LE~~~~~~s~RiiDL~aPIGkGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDERPEEVTdm~r~ 220 (416)
T PRK09376 141 YPNERLKLETGTEDLSTRVIDLVAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRS 220 (416)
T ss_pred CCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 97223114568876540021100541358500375699875479999999999856997199999904893477787750
Q ss_pred HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 64277553289841577880344444456777888864267988999709899999987665404778432366324554
Q gi|254780684|r 209 YLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFS 288 (438)
Q Consensus 209 ~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~ 288 (438)
T Consensus 221 v~~e------V~aStfD~~~~~H~~vae~~lerAkRlvE~G~DVvillDSiTRLaRAyN~~~~~sGr~lsGG~D~~Al-~ 293 (416)
T PRK09376 221 VKGE------VVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANAL-H 293 (416)
T ss_pred CCEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-C
T ss_conf 4618------99977999878999999999999999987699789997315788888623469987754476577776-0
Q ss_pred HCCHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCH
Q ss_conf 2004444431136788523554333421-676420278999861260898704277589713114456400022120899
Q gi|254780684|r 289 ELPRLLERIGPSEKEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSA 367 (438)
Q Consensus 289 ~~~~l~ERag~~~~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~ 367 (438)
T Consensus 294 ~-PKrfFGAARnie~GGSLTIiaTaLveTgSrMDdvIfeEfkgTgNmEl~Ldr~la~~RifPAIdi~~SgTRkEelLl~~ 372 (416)
T PRK09376 294 R-PKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSP 372 (416)
T ss_pred C-CHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCH
T ss_conf 5-567641002677675177877777526862538999985157845999876677578864013335777257653799
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780684|r 368 DEKKLVSSLTHLIHRFEETR 387 (438)
Q Consensus 368 ~~~~~~~~~~~~l~~y~~~~ 387 (438)
T Consensus 373 ~e~~~~~~lRr~l~~~~~~e 392 (416)
T PRK09376 373 EELQKVWILRKILSPMDEVE 392 (416)
T ss_pred HHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999871599799