HHsearch alignment for GI: 254780684 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=100.00 E-value=5.6e-45 Score=346.97 Aligned_cols=296 Identities=24% Similarity=0.299 Sum_probs=236.8
Q ss_pred CEEEEEECC-CCCCCCCCCEEEECCCCEEE-CCHHHHHHHHHHHHHHC---------CCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 979999804-85574678889972885552-46668865430776304---------78877755530121125433300
Q gi|254780684|r 68 DIVYICPVG-IGEEISLGDLVFHWGRFRIS-PSACWCGRVINALGKPI---------DGDDSLGKGDLSMEIMSKVPPAM 136 (438)
Q Consensus 68 ~~~~l~~~~-~~~gI~~G~~V~~~g~~~i~-vG~~lLGRViD~lG~Pl---------Dg~~~l~~~~~~~~i~~~~p~p~ 136 (438)
T Consensus 44 dDiYVS~sqIrrf~LR~GD~V~G~--iR~p~~geaL-~~V~~VNg~~pe~~~~R~~F~~LTPi~P~e-rl~LE~~~~--- 116 (379)
T PRK12608 44 DDVYVSPALIRRFGLRTGDLVEGV--IRAPREKETL-VRIDSVNGTDPEKLQRRKHFDDLTPLHPEE-RIVLETGSD--- 116 (379)
T ss_pred CCEEECHHHHHHCCCCCCCEEEEE--ECCCCCCHHH-EEEHHCCCCCHHHHCCCCCCCCCCCCCCCC-EEECCCCCC---
T ss_conf 881009999975499999989998--6389987420-414523894989955746755687779965-044014887---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH----HCCCCCEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 01331100111245875200223585037526678899999999874----07898389931246522388999986427
Q gi|254780684|r 137 NRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR----SDCFDKVIISLVGERGREVREFIEDYLGD 212 (438)
Q Consensus 137 ~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~----~~~~dv~V~alIGeR~rev~efi~~~~~~ 212 (438)
T Consensus 117 ---------~~s~RiiDL~aPIGkGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDERPEEVTdm~r~v~gE 187 (379)
T PRK12608 117 ---------DLSMRVLDLVAPIGKGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDERPEEVTDMKRSVKGE 187 (379)
T ss_pred ---------CCCCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCEE
T ss_conf ---------64411031004634574012745898657899999999998579984899998168935888888623707
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCH
Q ss_conf 75532898415778803444444567778888642679889997098999999876654047784323663245542004
Q gi|254780684|r 213 NLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPR 292 (438)
Q Consensus 213 ~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~ 292 (438)
T Consensus 188 ------VvaSTfD~~~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRAyn~~~~~sGr~ls--gg~d~~al~~pk 259 (379)
T PRK12608 188 ------VYASTFDRPYDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARAYNSEVDSSGRTLS--GGVDARALERPK 259 (379)
T ss_pred ------EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHH
T ss_conf ------999779899899999999999999999876996899965177889987533688886157--786956750068
Q ss_pred HHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHH
Q ss_conf 444431136788523554333421-6764202789998612608987042775897131144564000221208999999
Q gi|254780684|r 293 LLERIGPSEKEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKK 371 (438)
Q Consensus 293 l~ERag~~~~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~ 371 (438)
T Consensus 260 ~~Fgaar~ie~gGSlTiiaTaLveTgs~mD~~i~eefkgtgn~el~Ldr~la~~r~fPAIdi~~SgTR~EelLl~~~e~~ 339 (379)
T PRK12608 260 RLFGAARKIEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLDSKELE 339 (379)
T ss_pred HHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHH
T ss_conf 98531257778866325666632266643458899963268608997255776788751155457762266548999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780684|r 372 LVSSLTHLIHRFEETR 387 (438)
Q Consensus 372 ~~~~~~~~l~~y~~~~ 387 (438)
T Consensus 340 ~~~~lRr~l~~~~~~e 355 (379)
T PRK12608 340 KVRLLRRALASLKPVE 355 (379)
T ss_pred HHHHHHHHHCCCCHHH
T ss_conf 9999999861799799