HHsearch alignment for GI: 254780684 and conserved domain: PRK12678
>PRK12678 transcription termination factor Rho; Provisional.
Probab=100.00 E-value=3e-33 Score=261.55 Aligned_cols=243 Identities=26% Similarity=0.367 Sum_probs=205.9
Q ss_pred CCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 3330001331-10011124587520022358503752667889999999987----407898389931246522388999
Q gi|254780684|r 132 VPPAMNRQRV-EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA----RSDCFDKVIISLVGERGREVREFI 206 (438)
Q Consensus 132 ~p~p~~R~~i-~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~alIGeR~rev~efi 206 (438)
T Consensus 381 p~~P~erl~le~~~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlLiDERPEEVTdm~ 460 (667)
T PRK12678 381 PLYPNERLRLETEPNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQ 460 (667)
T ss_pred CCCCCCEEECCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 78986422334677653222301113567884546757997872599999999998569972899997378851566766
Q ss_pred HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCC-----
Q ss_conf 986427755328984157788034444445677788886426798899970989999998766540477843236-----
Q gi|254780684|r 207 EDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARG----- 281 (438)
Q Consensus 207 ~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~g----- 281 (438)
T Consensus 461 r~v~ge------ViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~sGr~lsGGvD~~Al 534 (667)
T PRK12678 461 RSVKGE------VIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTAL 534 (667)
T ss_pred HCCCEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 404606------99866889888899999999999999875699779996406688887604469987734676486766
Q ss_pred CCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 63245542004444431136788523554333421-67642027899986126089870427758971311445640002
Q gi|254780684|r 282 YPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL 360 (438)
Q Consensus 282 yp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~ 360 (438)
T Consensus 535 ~~PKrff-------GAARnie~GGSLTIlaTaLveTGSrmDevIfeEFKGTGNmEl~LdR~la~~RifPAidi~~SgTR~ 607 (667)
T PRK12678 535 YPPKRFF-------GAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKRVFPAVDVNPSGTRK 607 (667)
T ss_pred HCHHHHH-------HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCH
T ss_conf 0107776-------777524767447675445530465067889988537664288862335645565311344577506
Q ss_pred CHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 212089999999999999999999999
Q gi|254780684|r 361 ADKAWSADEKKLVSSLTHLIHRFEETR 387 (438)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~y~~~~ 387 (438)
T Consensus 608 eelLl~~~e~~~~~~lRr~l~~~~~~~ 634 (667)
T PRK12678 608 EELLLSPDELAIVHKLRRVLSGLDSQQ 634 (667)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 765379999999999999872599899