HHsearch alignment for GI: 254780684 and conserved domain: PRK12678

>PRK12678 transcription termination factor Rho; Provisional.
Probab=100.00  E-value=3e-33  Score=261.55  Aligned_cols=243  Identities=26%  Similarity=0.367  Sum_probs=205.9

Q ss_pred             CCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             3330001331-10011124587520022358503752667889999999987----407898389931246522388999
Q gi|254780684|r  132 VPPAMNRQRV-EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA----RSDCFDKVIISLVGERGREVREFI  206 (438)
Q Consensus       132 ~p~p~~R~~i-~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~alIGeR~rev~efi  206 (438)
T Consensus       381 p~~P~erl~le~~~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlLiDERPEEVTdm~  460 (667)
T PRK12678        381 PLYPNERLRLETEPNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQ  460 (667)
T ss_pred             CCCCCCEEECCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf             78986422334677653222301113567884546757997872599999999998569972899997378851566766


Q ss_pred             HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCC-----
Q ss_conf             986427755328984157788034444445677788886426798899970989999998766540477843236-----
Q gi|254780684|r  207 EDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARG-----  281 (438)
Q Consensus       207 ~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~g-----  281 (438)
T Consensus       461 r~v~ge------ViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~sGr~lsGGvD~~Al  534 (667)
T PRK12678        461 RSVKGE------VIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTAL  534 (667)
T ss_pred             HCCCEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             404606------99866889888899999999999999875699779996406688887604469987734676486766


Q ss_pred             CCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             63245542004444431136788523554333421-67642027899986126089870427758971311445640002
Q gi|254780684|r  282 YPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL  360 (438)
Q Consensus       282 yp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~  360 (438)
T Consensus       535 ~~PKrff-------GAARnie~GGSLTIlaTaLveTGSrmDevIfeEFKGTGNmEl~LdR~la~~RifPAidi~~SgTR~  607 (667)
T PRK12678        535 YPPKRFF-------GAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKRVFPAVDVNPSGTRK  607 (667)
T ss_pred             HCHHHHH-------HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCH
T ss_conf             0107776-------777524767447675445530465067889988537664288862335645565311344577506


Q ss_pred             CHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             212089999999999999999999999
Q gi|254780684|r  361 ADKAWSADEKKLVSSLTHLIHRFEETR  387 (438)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~l~~y~~~~  387 (438)
T Consensus       608 eelLl~~~e~~~~~~lRr~l~~~~~~~  634 (667)
T PRK12678        608 EELLLSPDELAIVHKLRRVLSGLDSQQ  634 (667)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             765379999999999999872599899