HHsearch alignment for GI: 254780684 and conserved domain: PRK13343
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional.
Probab=100.00 E-value=0 Score=914.04 Aligned_cols=417 Identities=25% Similarity=0.357 Sum_probs=392.3
Q ss_pred HHHHHHHHHHHHHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCC
Q ss_conf 36999999997413342-12012899995258999826888873518999569960799999741997999980485574
Q gi|254780684|r 3 KNLETLAQLAEDYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEI 81 (438)
Q Consensus 3 ~~l~~l~~~~~~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI 81 (438)
T Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~dgi~~v~GL~-~~~~gel~~f~~~---~~g~v~~l~~d~v~~v~lg~~~~i 82 (502)
T PRK13343 7 SWLARIRQRIARYELAPDAQEIGRVESVGDGIAFVSGLP-DAALDELLRFDGG---SRGFAFNLEEELVGAVLLDDTADL 82 (502)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEEECCC-CCCCCCEEEECCC---CEEEEEECCCCEEEEEEECCCCCC
T ss_conf 999999999962688772367679999828679992674-1423888997899---779999414983999995598788
Q ss_pred CCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 67888997288-55524666886543077630478877755530121125433300013311001112458752002235
Q gi|254780684|r 82 SLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCH 160 (438)
Q Consensus 82 ~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~ 160 (438)
T Consensus 83 ~~G~~V~~TG~~l~VpVG~~lLGRVvd~lG~PiDg~g~i~~~-~~~pi~~~ap~~~~R~~v~epL~TGIkaID~l~pigr 161 (502)
T PRK13343 83 RAGTEVKRTGRVLEVPVGDALLGRVIDPLGRPLDGGGPLEAT-ATRPIERPAPAIIERDSVTEPLQTGLKVIDALIPIGR 161 (502)
T ss_pred CCCCEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 999999968995488757310258737883443899998876-4321468897833216667543126067405566467
Q ss_pred CCEEEEECCCCCCHHHHH-HHH-HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 850375266788999999-998-740789838993124652238899998642-77553289841577880344444456
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLL-SMF-ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLT 237 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll-~~i-~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~ 237 (438)
T Consensus 162 GQR~gIfg~~GvGKT~L~~~~I~nq~~~~vi~Vyv~IGer~~ev~~~v~~l~~~gal~~tvvV~ata~~p~~~r~~ap~~ 241 (502)
T PRK13343 162 GQRELIIGDRQTGKTAIAIDAIINQKDKDVICVYVAIGQKASTVARVIDTLREHGALEYTTVVVAEASDPPGLQYLAPFA 241 (502)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 85775136788880489999999725788749999960451659899999876485131224523778986887555665
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCC--CCCCCEEEEEEEEE
Q ss_conf 7778888642679889997098999999876654047784323663245542004444431136--78852355433342
Q gi|254780684|r 238 AVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE--KEKGNITAVISVLV 315 (438)
Q Consensus 238 a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~--~~~GSiT~~~~v~~ 315 (438)
T Consensus 242 a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlERa~~~~~~~ggGSITalp~V~~ 321 (502)
T PRK13343 242 GCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERATKLSPELGGGSLTALPIIET 321 (502)
T ss_pred HCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf 20257999966996799995668999999899997489987667694588772689988875268899846645169972
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 16764202789998612608987042775897131144564000221208999999999999999999999999985234
Q gi|254780684|r 316 DGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGY 395 (438)
Q Consensus 316 ~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y 395 (438)
T Consensus 322 ~~dDis~pIp~~v~sItDGqIvLsr~La~~G~~PAIdv~~SvSRVg~~aq~~~~k~va~~lr~~laqy~el~~f~~fg~- 400 (502)
T PRK13343 322 QAGDLAAYIPTNLISITDGQIFLDSDLFASGQRPAVDVGKSVSRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGA- 400 (502)
T ss_pred CCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 4887566345656522261699724532268378517877613568577889999999999999998999999998743-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 46999899999999999999835998889997
Q gi|254780684|r 396 RPGVDLILDKAVHQVPIIYDFLKQSPSDLSSE 427 (438)
Q Consensus 396 ~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~ 427 (438)
T Consensus 401 --~ld~~~~~~l~rg~r~~~~lkQ~~~~p~~~ 430 (502)
T PRK13343 401 --RLDAGTRKQITRGRRLRELLKQPRFSPLSV 430 (502)
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf --589999999999999999857888999789