HHsearch alignment for GI: 254780684 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.91 E-value=0.0086 Score=39.35 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=85.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 3752667889999999987407898389931-246522388999986427755328984157788034444445677788
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISL-VGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~al-IGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
T Consensus 33 ~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPgDlaaiLt~L--------------------------------- 79 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL--------------------------------- 79 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC---------------------------------
T ss_conf 66317568746789999999838932674067554757899999705---------------------------------
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHH----------HHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 886426798899970989999998766----------5404778432366324554200444443113678852355433
Q gi|254780684|r 243 EYFSSKGDNVLLILDSITRFAHSIREI----------ATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVIS 312 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~tr~a~A~rei----------s~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~ 312 (438)
T Consensus 80 -----~~gDVL-FIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~l----dLpP--------------FTLvG- 134 (305)
T TIGR00635 80 -----EEGDVL-FIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRL----DLPP--------------FTLVG- 134 (305)
T ss_pred -----CCCCEE-ECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEE----CCCC--------------CCCCC-
T ss_conf -----689631-0125650483345310530012178778712898525760----6869--------------44200-
Q ss_pred EEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf 34216764202789998612608987042775897131144564000221-208999999999999----9999999999
Q gi|254780684|r 313 VLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD-KAWSADEKKLVSSLT----HLIHRFEETR 387 (438)
Q Consensus 313 v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~-~~~~~~~~~~~~~~~----~~l~~y~~~~ 387 (438)
T Consensus 135 ATTR~G~lt~PLrdRFG~~~rl~fY~~~EL~~I--------v~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVR 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTPEELAEI--------VSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVR 206 (305)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 003477410313345447454026898789999--------875334414300778999998754786378887767664
Q ss_pred HHHHHHC
Q ss_conf 9998523
Q gi|254780684|r 388 DIRLIGG 394 (438)
Q Consensus 388 ~l~~~g~ 394 (438)
T Consensus 207 DfA~V~~ 213 (305)
T TIGR00635 207 DFAQVRG 213 (305)
T ss_pred HHHHHHC
T ss_conf 4888726