HHsearch alignment for GI: 254780684 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.53 E-value=0.029 Score=35.53 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHC--------------------CCC------CCCCCCCEEEEECC---CCCCCCCCCCCCCCHHH
Q ss_conf 46668865430776304--------------------788------77755530121125---43330001331100111
Q gi|254780684|r 97 PSACWCGRVINALGKPI--------------------DGD------DSLGKGDLSMEIMS---KVPPAMNRQRVEKGFKT 147 (438)
Q Consensus 97 vG~~lLGRViD~lG~Pl--------------------Dg~------~~l~~~~~~~~i~~---~~p~p~~R~~i~e~L~T 147 (438)
T Consensus 266 AgSIl~GRaLaPid~aI~~Wk~~~~Ar~ay~Rl~~ll~~~p~~~~~m~LP~P~G~L~vE~v~~~PP~~~~---WsqPivP 342 (556)
T TIGR01842 266 AGSILVGRALAPIDGAIGGWKQFSAARQAYKRLNELLAEYPSRAEAMALPEPEGHLSVENVTIVPPGGKK---WSQPIVP 342 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC---CCCCCCC
T ss_conf 8889997784107788888888999999999999999857888754578898636888776510786313---5789776
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 24587520022358503752667889999999987
Q gi|254780684|r 148 GIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA 182 (438)
Q Consensus 148 GIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~ 182 (438)
T Consensus 343 k~~l~gi~F~~~aGe~laIIGPSgSGKStLaR~~v 377 (556)
T TIGR01842 343 KPTLRGISFAIQAGEALAIIGPSGSGKSTLARILV 377 (556)
T ss_pred HHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 14227862156377458887478652588987887