HHsearch alignment for GI: 254780684 and conserved domain: TIGR02236

>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.97  E-value=0.0019  Score=44.08  Aligned_cols=131  Identities=22%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEE-EECCCCCCHHHHHHHHHHHCC-----------------CC-C
Q ss_conf             54333000133110011124587520022358-5037-526678899999999874078-----------------98-3
Q gi|254780684|r  130 SKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHG-QRIG-VFAGSGIGKSTLLSMFARSDC-----------------FD-K  189 (438)
Q Consensus       130 ~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~G-QR~g-Ifg~~GvGKt~Ll~~i~~~~~-----------------~d-v  189 (438)
T Consensus        63 ~~a~~vl~rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~  142 (333)
T TIGR02236        63 ETADDVLERRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPK  142 (333)
T ss_pred             HHHHHHHHHHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCE
T ss_conf             14899999872075044486367656079600005888771007865787667655322871121011000147767876


Q ss_pred             EEEEECC-------CCCHHHHH-HHHH-H-----HC--CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCE-
Q ss_conf             8993124-------65223889-9998-6-----42--77553289841577880344444456777888864267988-
Q gi|254780684|r  190 VIISLVG-------ERGREVRE-FIED-Y-----LG--DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNV-  252 (438)
Q Consensus       190 ~V~alIG-------eR~rev~e-fi~~-~-----~~--~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~V-  252 (438)
T Consensus       143 av~--IDTEnTFRPERI~qmA~GL~~g~l~~~melD~~evL~nI--~vARAyNS-~HQmllve~~~~li~e~~~~~~pv~  217 (333)
T TIGR02236       143 AVY--IDTENTFRPERIEQMAKGLARGTLQAAMELDPDEVLKNI--YVARAYNS-NHQMLLVEKAKELIKELKNEDKPVR  217 (333)
T ss_pred             EEE--EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCE--EEEEEECC-HHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             899--855979862579999986311136665327877772030--47785263-1479999999999973015799468


Q ss_pred             EEEEECHHHHHHH
Q ss_conf             9997098999999
Q gi|254780684|r  253 LLILDSITRFAHS  265 (438)
Q Consensus       253 ll~~Ds~tr~a~A  265 (438)
T Consensus       218 L~~VDSLtsHFRa  230 (333)
T TIGR02236       218 LLIVDSLTSHFRA  230 (333)
T ss_pred             EEEECCCCCCCCC
T ss_conf             9998121002236