HHsearch alignment for GI: 254780684 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.97 E-value=0.0019 Score=44.08 Aligned_cols=131 Identities=22% Similarity=0.242 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEE-EECCCCCCHHHHHHHHHHHCC-----------------CC-C
Q ss_conf 54333000133110011124587520022358-5037-526678899999999874078-----------------98-3
Q gi|254780684|r 130 SKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHG-QRIG-VFAGSGIGKSTLLSMFARSDC-----------------FD-K 189 (438)
Q Consensus 130 ~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~G-QR~g-Ifg~~GvGKt~Ll~~i~~~~~-----------------~d-v 189 (438)
T Consensus 63 ~~a~~vl~rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~ 142 (333)
T TIGR02236 63 ETADDVLERRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPK 142 (333)
T ss_pred HHHHHHHHHHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCE
T ss_conf 14899999872075044486367656079600005888771007865787667655322871121011000147767876
Q ss_pred EEEEECC-------CCCHHHHH-HHHH-H-----HC--CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCE-
Q ss_conf 8993124-------65223889-9998-6-----42--77553289841577880344444456777888864267988-
Q gi|254780684|r 190 VIISLVG-------ERGREVRE-FIED-Y-----LG--DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNV- 252 (438)
Q Consensus 190 ~V~alIG-------eR~rev~e-fi~~-~-----~~--~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~V- 252 (438)
T Consensus 143 av~--IDTEnTFRPERI~qmA~GL~~g~l~~~melD~~evL~nI--~vARAyNS-~HQmllve~~~~li~e~~~~~~pv~ 217 (333)
T TIGR02236 143 AVY--IDTENTFRPERIEQMAKGLARGTLQAAMELDPDEVLKNI--YVARAYNS-NHQMLLVEKAKELIKELKNEDKPVR 217 (333)
T ss_pred EEE--EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCE--EEEEEECC-HHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 899--855979862579999986311136665327877772030--47785263-1479999999999973015799468
Q ss_pred EEEEECHHHHHHH
Q ss_conf 9997098999999
Q gi|254780684|r 253 LLILDSITRFAHS 265 (438)
Q Consensus 253 ll~~Ds~tr~a~A 265 (438)
T Consensus 218 L~~VDSLtsHFRa 230 (333)
T TIGR02236 218 LLIVDSLTSHFRA 230 (333)
T ss_pred EEEECCCCCCCCC
T ss_conf 9998121002236