HHsearch alignment for GI: 254780684 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=96.47 E-value=0.02 Score=36.70 Aligned_cols=147 Identities=27% Similarity=0.389 Sum_probs=98.2
Q ss_pred ECCCE-EEEEECCCCCCC---CCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC--CC-----C
Q ss_conf 41997-999980485574---67888997288-5552466688654307763047887775553012112--54-----3
Q gi|254780684|r 65 INLDI-VYICPVGIGEEI---SLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIM--SK-----V 132 (438)
Q Consensus 65 ~~~~~-~~l~~~~~~~gI---~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~--~~-----~ 132 (438)
T Consensus 18 LdD~~vvEIMLNpDG~-Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegE--LPldflGsRFeGl~ 94 (315)
T TIGR02782 18 LDDPKVVEIMLNPDGK-LWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGE--LPLDFLGSRFEGLL 94 (315)
T ss_pred HCCCCEEEEEECCCCH-HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEEC--CCCCHHHCCCCCCC
T ss_conf 3798838998669870-10500679730016611789999999999876446043578626610--75111201100468
Q ss_pred CC------CCCCCC------CCCCHHHHH---HHHHHHHHHCCC-CEEEEECCCCCCHHHHH----HHHHH-HCCCCCEE
Q ss_conf 33------000133------110011124---587520022358-50375266788999999----99874-07898389
Q gi|254780684|r 133 PP------AMNRQR------VEKGFKTGI---RVIDIFTPLCHG-QRIGVFAGSGIGKSTLL----SMFAR-SDCFDKVI 191 (438)
Q Consensus 133 p~------p~~R~~------i~e~L~TGI---r~ID~l~pig~G-QR~gIfg~~GvGKt~Ll----~~i~~-~~~~dv~V 191 (438)
T Consensus 95 PPVV~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNAlla~I~~l~~P~dR~v 174 (315)
T TIGR02782 95 PPVVEAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANALLAEIAKLNDPDDRVV 174 (315)
T ss_pred CCCCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 77556551011102241047077764044557899999999971298899814588579999999998852169996189
Q ss_pred EEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCC
Q ss_conf 93124652238899998642-7755328984157788
Q gi|254780684|r 192 ISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDES 227 (438)
Q Consensus 192 ~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~ 227 (438)
T Consensus 175 I-------------iEDT~ElQC~A~N~V~lrT~d~~ 198 (315)
T TIGR02782 175 I-------------IEDTAELQCAAENLVALRTSDDV 198 (315)
T ss_pred E-------------EECCHHHHHCCCCEEEEECCCCC
T ss_conf 9-------------85471320137870687448986