HHsearch alignment for GI: 254780684 and conserved domain: TIGR03324
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=910.68 Aligned_cols=419 Identities=27% Similarity=0.399 Sum_probs=397.6
Q ss_pred CHHHHHHHHHHHHHCCCCE-EEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCC
Q ss_conf 2369999999974133421-201289999525899982688887351899956996079999974199799998048557
Q gi|254780684|r 2 QKNLETLAQLAEDYSKNLV-VQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEE 80 (438)
Q Consensus 2 ~~~l~~l~~~~~~~~~~l~-~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~g 80 (438)
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~e~G~v~~vgdgia~v~Gl~-~~~~~el~~f~~---~~~g~~~nle~~~vg~v~lg~~~~ 81 (497)
T TIGR03324 6 DKAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLP-GVGFEELLRFPG---GLLGIAFNVDEDEVGVVLLGEYSH 81 (497)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEECCC-CCCCCCEEEECC---CCEEEEEECCCCCEEEEEECCCCC
T ss_conf 9999999999972488752466679999748569997850-104486388089---988999963788379999569877
Q ss_pred CCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 467888997288-5552466688654307763047887775553012112543330001331100111245875200223
Q gi|254780684|r 81 ISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC 159 (438)
Q Consensus 81 I~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig 159 (438)
T Consensus 82 i~~G~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDGkgpi~~~-~~~pie~~aP~i~~R~~V~epL~TGIkaID~liPIG 160 (497)
T TIGR03324 82 LQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASS-PRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIG 160 (497)
T ss_pred CCCCCEEEECCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 6899999858982287448887176458885567899998876-410245789896347888871002414554246556
Q ss_pred CCCEEEEECCCCCCHHHHH--HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 5850375266788999999--998740789838993124652238899998642-7755328984157788034444445
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPL 236 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll--~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~ 236 (438)
T Consensus 161 rGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~~TvVV~Ata~dpa~lr~~Apy 240 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPY 240 (497)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 77467764588888008899999704566718999973250787999999987487523417999568899899988789
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCC--CCCCEEEEEEEE
Q ss_conf 677788886426798899970989999998766540477843236632455420044444311367--885235543334
Q gi|254780684|r 237 TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVL 314 (438)
Q Consensus 237 ~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~--~~GSiT~~~~v~ 314 (438)
T Consensus 241 aa~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFylhsrLLERA~~l~~~~ggGSiTalpive 320 (497)
T TIGR03324 241 AATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIE 320 (497)
T ss_pred HHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
T ss_conf 99999999996897489999780699999999998648999877889359877078887324778999997723247998
Q ss_pred ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 21676420278999861260898704277589713114456400022120899999999999999999999999998523
Q gi|254780684|r 315 VDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGG 394 (438)
Q Consensus 315 ~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~ 394 (438)
T Consensus 321 t~~~D~sayIptnvisItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~~~~k~vag~lrl~laq~~El~~f~qfgs 400 (497)
T TIGR03324 321 TEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQFEELETFARFGA 400 (497)
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 02886566445422201086799724076579976435687731367243058999874456999998999999987624
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 4469998999999999999998359988899976
Q gi|254780684|r 395 YRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSED 428 (438)
Q Consensus 395 y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~ 428 (438)
T Consensus 401 ---~ld~~t~~~l~rG~r~~e~lkQ~~~~p~~~~ 431 (497)
T TIGR03324 401 ---RLDENTRKTIEHGRRIRACLKQTQSSPLTVP 431 (497)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf ---4489999999887999998667778996999