HHsearch alignment for GI: 254780684 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.80 E-value=0.49 Score=26.54 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=26.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEEC
Q ss_conf 75200223585037526678899999999874078--983899312
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISLV 195 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~alI 195 (438)
T Consensus 29 l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~ 74 (226)
T TIGR03420 29 LRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 9987646688869998999998899999999998626995799529