HHsearch alignment for GI: 254780684 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.59 E-value=0.0011 Score=45.94 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=80.0
Q ss_pred EEEECCCCCCHHHHHHHHH-HH-CCCCCEEEEECCCCCHHHHHHHHHHH-C-CC-CC-CEEEEEEC--CCCCHHHHHHHH
Q ss_conf 3752667889999999987-40-78983899312465223889999864-2-77-55-32898415--778803444444
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFA-RS-DCFDKVIISLVGERGREVREFIEDYL-G-DN-LK-KSVVVVAT--SDESPILRKMAP 235 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~-~~-~~~dv~V~alIGeR~rev~efi~~~~-~-~~-l~-~tvvv~~t--~d~~~~~r~~a~ 235 (438)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 15876899999999999999998769978999950799999999998399858986458568996262002203332367
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 56777888864267988999709899999987665404778432366324554200444443113678852355433342
Q gi|254780684|r 236 LTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLV 315 (438)
Q Consensus 236 ~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~ 315 (438)
T Consensus 82 ~l~~~i~~~i~~~~~~~-vVIDSi~~l~~~~--------~----~~~~~~~~~l~~-~l~~-------~-~~t~ll~~e~ 139 (187)
T cd01124 82 ELIQRLKDAIEEFKAKR-VVIDSVSGLLLME--------Q----STARLEIRRLLF-ALKR-------F-GVTTLLTSEQ 139 (187)
T ss_pred HHHHHHHHHHHHHCCCE-EEECCHHHHHHCC--------H----HHHHHHHHHHHH-HHHH-------C-CCCEEEEEEE
T ss_conf 89999999999849989-9994868875256--------6----668999999999-9997-------6-9968999974
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHC
Q ss_conf 167642027899986126089870427758
Q gi|254780684|r 316 DGDNHNDPIADSVRSILDGHIVLNRSLAEE 345 (438)
Q Consensus 316 ~~dd~~~pi~~~~~~i~DG~i~L~r~la~~ 345 (438)
T Consensus 140 ~~~~~~~~~~~~~~~l~DgiI~L~~~~~~~ 169 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLRLDEEGG 169 (187)
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEEEEECCC
T ss_conf 256676678884779978999997880499