HHsearch alignment for GI: 254780684 and conserved domain: cd01136
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=0 Score=825.14 Aligned_cols=325 Identities=50% Similarity=0.834 Sum_probs=317.7
Q ss_pred CCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 85552466688654307763047887775553012112543330001331100111245875200223585037526678
Q gi|254780684|r 92 RFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSG 171 (438)
Q Consensus 92 ~~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~G 171 (438)
T Consensus 1 Pl~vpVg~~lLGRVid~~G~PiDg~~~i~~~-~~~pi~~~ap~~~~R~~v~e~l~TGI~~ID~l~pigrGQR~~Ifg~~g 79 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKE-VRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSG 79 (326)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCC
T ss_conf 9653557665174767883415799999998-615256899580330788875115770420026624798787436999
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999999998740789838993124652238899998642-775532898415778803444444567778888642679
Q gi|254780684|r 172 IGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGD 250 (438)
Q Consensus 172 vGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~ 250 (438)
T Consensus 80 ~GKt~Ll~~i~~~~~~~v~V~~~IGer~rev~e~~~~~~~~~~l~~tvvv~atad~~~~~r~~a~~~a~~~AEyfrd~G~ 159 (326)
T cd01136 80 VGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGK 159 (326)
T ss_pred CCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98466787686414677599996053388999999986245653222899606889989999988877777889997587
Q ss_pred CEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 88999709899999987665404778432366324554200444443113678852355433342167642027899986
Q gi|254780684|r 251 NVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRS 330 (438)
Q Consensus 251 ~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~ 330 (438)
T Consensus 160 dVL~~~Dsltr~A~A~rEisl~~g~~P~~~gyp~~~f~~~~~l~ERag~~--~~GSIT~i~~v~~~~dd~tdpi~~~~~~ 237 (326)
T cd01136 160 DVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNS--DKGSITAFYTVLVEGDDLNEPIADAVRS 237 (326)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCEEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 33787524689999999988864899875667766888878988864179--9985244457870598878862788987
Q ss_pred HCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 12608987042775897131144564000221208999999999999999999999999985234469998999999999
Q gi|254780684|r 331 ILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQV 410 (438)
Q Consensus 331 i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~ 410 (438)
T Consensus 238 i~Dg~ivLsr~La~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~g~d~~~d~~i~~~ 317 (326)
T cd01136 238 ILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKKGSDPEVDEAIKLL 317 (326)
T ss_pred HCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 54738998588996799997488627533660006799999999999999989999999985497679898999999989
Q ss_pred HHHHHHHCC
Q ss_conf 999998359
Q gi|254780684|r 411 PIIYDFLKQ 419 (438)
Q Consensus 411 ~~i~~fl~Q 419 (438)
T Consensus 318 ~~i~~fL~Q 326 (326)
T cd01136 318 PKIEAFLKQ 326 (326)
T ss_pred HHHHHHHCC
T ss_conf 999998586