HHsearch alignment for GI: 254780684 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=90.19 E-value=0.3 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 58503752667889999999987407
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
T Consensus 21 ~~~itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred ECCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 08889999899999999999986304