HHsearch alignment for GI: 254780684 and conserved domain: cd03247

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.58  E-value=0.022  Score=36.36  Aligned_cols=33  Identities=33%  Similarity=0.528  Sum_probs=28.7

Q ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             520022358503752667889999999987407
Q gi|254780684|r  153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD  185 (438)
Q Consensus       153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~  185 (438)
T Consensus        20 ~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~   52 (178)
T cd03247          20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CEEEEECCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             558998699999999999875999999998617