HHsearch alignment for GI: 254780684 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.015 Score=37.61 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=28.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
T Consensus 20 ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 608998799999999899982999999996676