HHsearch alignment for GI: 254780684 and conserved domain: cd03251

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14  E-value=0.015  Score=37.61  Aligned_cols=33  Identities=33%  Similarity=0.473  Sum_probs=28.4

Q ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             520022358503752667889999999987407
Q gi|254780684|r  153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD  185 (438)
Q Consensus       153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~  185 (438)
T Consensus        20 ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~   52 (234)
T cd03251          20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             608998799999999899982999999996676