HHsearch alignment for GI: 254780684 and conserved domain: cd03264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.84 E-value=0.18 Score=29.77 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCCEEEE
Q ss_conf 5200223585037526678899999999874078---9838993
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC---FDKVIIS 193 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~---~dv~V~a 193 (438)
T Consensus 18 ~vs~~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g 60 (211)
T cd03264 18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60 (211)
T ss_pred CCEEEECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 714688897-5999999982399999999759668962999999