HHsearch alignment for GI: 254780684 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.0073 Score=39.85 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=30.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
T Consensus 42 ~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~p~ 77 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT 77 (269)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 747588899999999899848999999997599999