HHsearch alignment for GI: 254780684 and conserved domain: cd03295
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0064 Score=40.29 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
T Consensus 19 ~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~p~ 54 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT 54 (242)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 027688699899999999956999999997599998