HHsearch alignment for GI: 254780684 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.014 Score=37.77 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=31.1
Q ss_pred HHH-HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 587-520022358503752667889999999987407898
Q gi|254780684|r 150 RVI-DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 150 r~I-D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
T Consensus 16 ~~l~~is~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p~ 55 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD 55 (239)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 9986638698899899999999977999999997699998