Query gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 438
No_of_seqs 186 out of 2463
Neff 6.0
Searched_HMMs 39220
Date Sun May 29 20:41:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780684.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02545 ATP_syn_fliI flagell 100.0 0 0 1159.1 37.5 415 21-437 2-438 (439)
2 TIGR02546 III_secr_ATP type II 100.0 0 0 1152.6 34.5 412 19-434 2-426 (430)
3 TIGR01026 fliI_yscN ATPase Fli 100.0 0 0 1133.6 32.2 432 1-434 1-450 (455)
4 COG1157 FliI Flagellar biosynt 100.0 0 0 1021.4 40.5 428 2-437 3-435 (441)
5 PRK06002 fliI flagellum-specif 100.0 0 0 1009.0 43.4 437 2-438 4-442 (450)
6 PRK08972 fliI flagellum-specif 100.0 0 0 998.2 42.3 421 5-428 6-428 (440)
7 PRK05688 fliI flagellum-specif 100.0 0 0 1000.0 40.8 432 1-435 1-444 (451)
8 PRK08927 fliI flagellum-specif 100.0 0 0 994.4 42.5 429 6-437 3-435 (441)
9 PRK06936 type III secretion sy 100.0 0 0 993.9 42.1 427 4-437 7-438 (439)
10 PRK06315 type III secretion sy 100.0 0 0 988.8 42.0 432 1-438 4-442 (442)
11 TIGR03496 FliI_clade1 flagella 100.0 0 0 988.5 40.7 408 24-437 1-411 (411)
12 PRK07960 fliI flagellum-specif 100.0 0 0 988.1 40.5 431 2-435 6-451 (455)
13 PRK09099 type III secretion sy 100.0 0 0 983.9 41.3 425 5-436 9-438 (441)
14 TIGR03498 FliI_clade3 flagella 100.0 0 0 981.5 42.6 413 24-436 1-417 (418)
15 PRK07721 fliI flagellum-specif 100.0 0 0 982.0 42.0 416 17-437 11-432 (435)
16 PRK07196 fliI flagellum-specif 100.0 0 0 976.9 43.0 427 4-436 1-431 (434)
17 PRK07594 type III secretion sy 100.0 0 0 974.6 40.3 412 16-435 15-429 (433)
18 PRK06820 type III secretion sy 100.0 0 0 970.7 39.3 428 3-438 8-441 (445)
19 PRK08472 fliI flagellum-specif 100.0 0 0 967.8 40.3 427 5-437 3-434 (435)
20 PRK08149 ATP synthase SpaL; Va 100.0 0 0 969.4 38.9 414 17-437 1-422 (427)
21 TIGR03497 FliI_clade2 flagella 100.0 0 0 964.4 39.6 406 24-437 1-409 (413)
22 PRK06793 fliI flagellum-specif 100.0 0 0 957.8 41.1 410 14-431 13-425 (432)
23 PRK05922 type III secretion sy 100.0 0 0 945.9 39.7 425 4-437 3-431 (434)
24 TIGR00962 atpA ATP synthase F1 100.0 0 0 952.2 22.7 415 4-426 7-447 (520)
25 TIGR03324 alt_F1F0_F1_al alter 100.0 0 0 910.7 40.9 419 2-428 6-431 (497)
26 PRK13343 F0F1 ATP synthase sub 100.0 0 0 914.0 38.0 417 3-427 7-430 (502)
27 CHL00059 atpA ATP synthase CF1 100.0 0 0 899.7 39.0 414 6-427 11-431 (501)
28 PRK09281 F0F1 ATP synthase sub 100.0 0 0 891.7 41.2 414 6-427 10-430 (502)
29 PRK04196 V-type ATP synthase s 100.0 0 0 886.4 39.1 414 21-437 2-433 (460)
30 PRK12597 F0F1 ATP synthase sub 100.0 0 0 883.7 38.6 408 23-436 3-426 (459)
31 PRK09280 F0F1 ATP synthase sub 100.0 0 0 879.4 39.8 411 22-436 4-430 (466)
32 TIGR03305 alt_F1F0_F1_bet alte 100.0 0 0 873.9 37.0 408 24-436 1-423 (449)
33 CHL00060 atpB ATP synthase CF1 100.0 0 0 860.9 39.3 412 21-436 8-447 (480)
34 PRK02118 V-type ATP synthase s 100.0 0 0 830.6 38.2 398 20-435 2-408 (432)
35 cd01136 ATPase_flagellum-secre 100.0 0 0 825.1 28.2 325 92-419 1-326 (326)
36 PRK07165 F0F1 ATP synthase sub 100.0 0 0 798.6 34.3 397 24-428 3-407 (507)
37 COG0056 AtpA F0F1-type ATP syn 100.0 0 0 786.3 33.0 415 6-428 10-431 (504)
38 PRK04192 V-type ATP synthase s 100.0 0 0 759.3 33.9 412 22-438 3-523 (585)
39 cd01135 V_A-ATPase_B V/A-type 100.0 0 0 730.6 20.0 267 93-360 2-276 (276)
40 cd01132 F1_ATPase_alpha F1 ATP 100.0 0 0 701.5 19.0 268 93-361 2-274 (274)
41 cd01133 F1-ATPase_beta F1 ATP 100.0 0 0 689.2 20.1 268 92-362 1-273 (274)
42 PTZ00185 ATPase alpha subunit; 100.0 0 0 669.4 25.1 365 23-387 40-428 (574)
43 COG1156 NtpB Archaeal/vacuolar 100.0 0 0 639.7 30.1 411 20-433 4-431 (463)
44 COG0055 AtpD F0F1-type ATP syn 100.0 0 0 635.3 29.4 412 23-437 3-433 (468)
45 cd01134 V_A-ATPase_A V/A-type 100.0 0 0 636.1 20.6 237 123-360 120-369 (369)
46 TIGR01043 ATP_syn_A_arch ATP s 100.0 0 0 612.8 26.3 410 23-438 2-523 (584)
47 KOG1351 consensus 100.0 0 0 571.4 29.1 429 7-438 8-463 (489)
48 COG1155 NtpA Archaeal/vacuolar 100.0 0 0 574.2 25.4 411 23-438 2-522 (588)
49 cd01128 rho_factor Transcripti 100.0 0 0 548.6 21.9 241 146-394 1-246 (249)
50 KOG1350 consensus 100.0 0 0 542.7 22.3 412 21-436 50-482 (521)
51 pfam00006 ATP-synt_ab ATP synt 100.0 0 0 546.5 18.9 211 147-358 1-213 (213)
52 KOG1352 consensus 100.0 0 0 545.0 18.4 410 21-438 19-544 (618)
53 TIGR01041 ATP_syn_B_arch ATP s 100.0 0 0 525.3 26.9 403 23-428 2-421 (458)
54 TIGR01040 V-ATPase_V1_B V-type 100.0 0 0 516.6 26.1 413 23-438 2-438 (464)
55 TIGR01039 atpD ATP synthase F1 100.0 0 0 486.3 20.9 394 23-421 2-405 (460)
56 TIGR01042 V-ATPase_V1_A V-type 100.0 0 0 472.5 22.8 411 22-438 1-527 (596)
57 PRK12608 transcription termina 100.0 5.6E-45 0 347.0 21.4 296 68-387 44-355 (379)
58 KOG1353 consensus 100.0 0 0 356.8 13.8 311 9-426 6-329 (340)
59 PRK09376 rho transcription ter 100.0 1.3E-36 3.4E-41 286.0 17.1 297 67-387 77-392 (416)
60 PRK12678 transcription termina 100.0 3E-33 7.6E-38 261.6 17.8 243 132-387 381-634 (667)
61 COG1158 Rho Transcription term 100.0 3.9E-32 1E-36 253.4 17.4 228 148-383 160-392 (422)
62 cd01120 RecA-like_NTPases RecA 99.9 4.5E-25 1.2E-29 201.9 16.5 157 164-340 2-165 (165)
63 TIGR00767 rho transcription te 99.8 1.8E-18 4.7E-23 153.7 14.6 240 142-389 154-398 (420)
64 PRK09302 circadian clock prote 98.3 1.5E-05 3.8E-10 59.5 10.8 195 136-357 239-444 (501)
65 PRK06067 flagellar accessory p 98.3 2.1E-05 5.3E-10 58.4 11.2 188 140-355 9-209 (241)
66 pfam06745 KaiC KaiC. This fami 98.2 2.2E-05 5.6E-10 58.2 10.7 189 145-354 1-203 (231)
67 PRK04328 hypothetical protein; 98.0 5.3E-05 1.4E-09 55.4 9.5 187 143-354 4-211 (250)
68 COG0467 RAD55 RecA-superfamily 98.0 0.00015 3.9E-09 52.1 11.8 190 143-354 3-208 (260)
69 smart00382 AAA ATPases associa 98.0 3.5E-05 9E-10 56.8 8.4 145 160-340 1-146 (148)
70 pfam02874 ATP-synt_ab_N ATP sy 98.0 2.9E-05 7.4E-10 57.4 7.9 66 26-91 1-69 (69)
71 pfam00306 ATP-synt_ab_C ATP sy 97.9 6.2E-05 1.6E-09 55.0 8.1 55 370-425 1-55 (110)
72 PRK09361 radB DNA repair and r 97.9 8.9E-05 2.3E-09 53.8 8.7 179 141-341 1-190 (224)
73 PRK09302 circadian clock prote 97.9 0.00042 1.1E-08 48.9 11.2 121 143-264 4-137 (501)
74 cd01394 radB RadB. The archaea 97.7 0.00095 2.4E-08 46.3 10.5 177 145-341 1-187 (218)
75 cd01124 KaiC KaiC is a circadi 97.6 0.0011 2.7E-08 45.9 9.9 160 164-345 2-169 (187)
76 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00043 1.1E-08 48.9 7.8 114 145-265 1-130 (235)
77 pfam00154 RecA recA bacterial 97.4 0.0012 3.2E-08 45.5 8.1 109 142-263 30-143 (322)
78 PRK13341 recombination factor 97.4 0.0022 5.6E-08 43.7 9.2 82 155-269 46-128 (726)
79 cd00983 recA RecA is a bacter 97.3 0.0019 4.9E-08 44.1 8.1 109 142-263 33-146 (325)
80 cd01393 recA_like RecA is a b 97.1 0.0014 3.7E-08 45.0 6.2 111 145-263 1-127 (226)
81 PRK08533 flagellar accessory p 97.1 0.014 3.7E-07 37.7 11.3 156 159-345 22-190 (230)
82 PRK13342 recombination factor 97.1 0.0036 9.3E-08 42.1 7.7 85 151-269 27-111 (417)
83 TIGR02236 recomb_radA DNA repa 97.0 0.0019 4.9E-08 44.1 5.5 131 130-265 63-230 (333)
84 COG2256 MGS1 ATPase related to 97.0 0.005 1.3E-07 41.0 7.6 78 159-269 46-123 (436)
85 PRK13631 cbiO cobalt transport 96.8 0.0064 1.6E-07 40.3 7.0 36 149-184 39-75 (320)
86 pfam00931 NB-ARC NB-ARC domain 96.8 0.011 2.9E-07 38.5 8.1 86 163-261 21-111 (285)
87 COG1155 NtpA Archaeal/vacuolar 96.7 0.0065 1.7E-07 40.2 6.6 134 228-364 295-436 (588)
88 PRK09354 recA recombinase A; P 96.7 0.012 2.9E-07 38.4 7.7 108 142-262 38-150 (350)
89 PRK04301 radA DNA repair and r 96.6 0.0038 9.8E-08 41.9 4.9 128 132-265 72-214 (318)
90 TIGR03015 pepcterm_ATPase puta 96.6 0.027 6.8E-07 35.7 9.0 152 164-329 46-206 (269)
91 pfam05496 RuvB_N Holliday junc 96.5 0.0084 2.2E-07 39.4 6.2 69 164-270 53-121 (234)
92 PRK11160 cysteine/glutathione 96.5 0.009 2.3E-07 39.2 6.3 36 153-188 359-394 (575)
93 TIGR02782 TrbB_P P-type conjug 96.5 0.02 5E-07 36.7 7.8 147 65-227 18-198 (315)
94 PRK11823 DNA repair protein Ra 96.4 0.031 7.9E-07 35.3 8.6 104 142-260 69-175 (454)
95 pfam08423 Rad51 Rad51. Rad51 i 96.4 0.0067 1.7E-07 40.1 5.1 129 131-265 11-153 (261)
96 COG0468 RecA RecA/RadA recombi 96.3 0.029 7.3E-07 35.5 7.8 116 139-266 36-157 (279)
97 cd00009 AAA The AAA+ (ATPases 96.3 0.033 8.5E-07 35.0 8.0 31 156-186 14-44 (151)
98 pfam03796 DnaB_C DnaB-like hel 96.3 0.028 7.2E-07 35.6 7.6 40 145-184 2-42 (186)
99 COG1124 DppF ABC-type dipeptid 96.2 0.0055 1.4E-07 40.7 3.5 38 154-191 26-66 (252)
100 PRK10636 putative ABC transpor 96.0 0.0073 1.9E-07 39.9 3.7 32 153-184 330-361 (638)
101 TIGR02868 CydC ABC transporter 96.0 0.0089 2.3E-07 39.2 4.1 31 156-186 382-412 (566)
102 COG1116 TauB ABC-type nitrate/ 96.0 0.0051 1.3E-07 41.0 2.8 34 153-186 21-54 (248)
103 KOG0743 consensus 96.0 0.025 6.3E-07 36.0 6.2 139 91-232 142-303 (457)
104 TIGR03608 L_ocin_972_ABC putat 95.9 0.014 3.5E-07 37.8 4.6 36 153-188 16-51 (206)
105 TIGR00635 ruvB Holliday juncti 95.9 0.0086 2.2E-07 39.4 3.6 165 164-394 33-213 (305)
106 PRK03992 proteasome-activating 95.9 0.17 4.2E-06 29.9 10.1 31 160-192 167-197 (390)
107 KOG4658 consensus 95.9 0.03 7.7E-07 35.4 6.2 102 145-260 163-271 (889)
108 TIGR01277 thiQ thiamine ABC tr 95.8 0.0072 1.8E-07 39.9 2.8 31 155-185 18-48 (213)
109 TIGR03265 PhnT2 putative 2-ami 95.8 0.0065 1.7E-07 40.2 2.5 36 150-185 18-54 (353)
110 cd03295 ABC_OpuCA_Osmoprotecti 95.8 0.0064 1.6E-07 40.3 2.4 36 153-188 19-54 (242)
111 cd03257 ABC_NikE_OppD_transpor 95.8 0.0067 1.7E-07 40.1 2.5 34 153-186 23-56 (228)
112 PTZ00035 Rad51; Provisional 95.7 0.059 1.5E-06 33.2 7.3 176 97-296 76-268 (350)
113 PRK10584 putative ABC transpor 95.7 0.012 3.1E-07 38.2 3.8 36 153-188 28-63 (228)
114 cd03300 ABC_PotA_N PotA is an 95.7 0.015 3.8E-07 37.6 4.1 36 153-188 18-53 (232)
115 PRK11147 ABC transporter ATPas 95.7 0.0083 2.1E-07 39.4 2.8 33 153-185 337-369 (632)
116 TIGR00972 3a0107s01c2 phosphat 95.7 0.0092 2.3E-07 39.1 3.0 33 154-186 20-52 (248)
117 cd03294 ABC_Pro_Gly_Bertaine T 95.7 0.0073 1.9E-07 39.9 2.4 36 153-188 42-77 (269)
118 PRK11819 putative ABC transpor 95.7 0.0079 2E-07 39.6 2.5 25 157-181 29-53 (556)
119 TIGR03258 PhnT 2-aminoethylpho 95.7 0.008 2E-07 39.6 2.5 36 153-188 23-58 (362)
120 PRK10070 glycine betaine trans 95.6 0.0079 2E-07 39.6 2.5 39 148-186 41-79 (400)
121 cd03293 ABC_NrtD_SsuB_transpor 95.6 0.0076 1.9E-07 39.7 2.4 36 150-185 18-54 (220)
122 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.005 1.3E-07 41.1 1.4 36 153-188 16-51 (211)
123 cd03289 ABCC_CFTR2 The CFTR su 95.6 0.0092 2.4E-07 39.1 2.8 33 153-185 22-54 (275)
124 cd03229 ABC_Class3 This class 95.6 0.0089 2.3E-07 39.2 2.7 36 153-188 18-53 (178)
125 pfam05729 NACHT NACHT domain. 95.6 0.047 1.2E-06 34.0 6.4 22 162-183 1-22 (165)
126 cd03247 ABCC_cytochrome_bd The 95.6 0.022 5.6E-07 36.4 4.6 33 153-185 20-52 (178)
127 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.0097 2.5E-07 38.9 2.7 34 153-186 26-59 (207)
128 PRK10636 putative ABC transpor 95.6 0.0088 2.2E-07 39.3 2.5 19 191-209 340-358 (638)
129 TIGR01842 type_I_sec_PrtD type 95.5 0.029 7.3E-07 35.5 5.0 83 97-182 266-377 (556)
130 cd03223 ABCD_peroxisomal_ALDP 95.5 0.0087 2.2E-07 39.3 2.3 32 153-184 19-50 (166)
131 PRK10744 phosphate transporter 95.5 0.011 2.8E-07 38.6 2.8 32 153-184 28-59 (257)
132 cd03253 ABCC_ATM1_transporter 95.5 0.01 2.7E-07 38.7 2.7 33 153-185 19-51 (236)
133 cd03262 ABC_HisP_GlnQ_permease 95.5 0.0099 2.5E-07 38.9 2.5 34 153-186 18-51 (213)
134 TIGR03415 ABC_choXWV_ATP choli 95.5 0.01 2.5E-07 38.9 2.5 61 126-186 7-75 (382)
135 TIGR02142 modC_ABC molybdate A 95.5 0.011 2.7E-07 38.7 2.7 34 151-184 13-46 (361)
136 cd03299 ABC_ModC_like Archeal 95.5 0.019 4.8E-07 36.9 3.9 37 153-189 17-53 (235)
137 cd03301 ABC_MalK_N The N-termi 95.5 0.02 5E-07 36.7 4.0 45 153-197 18-62 (213)
138 PRK11650 ugpC glycerol-3-phosp 95.5 0.0099 2.5E-07 38.9 2.5 34 153-186 22-55 (358)
139 PRK10771 thiQ thiamine transpo 95.5 0.012 3E-07 38.4 2.8 34 154-187 18-51 (233)
140 COG3842 PotA ABC-type spermidi 95.5 0.012 3E-07 38.3 2.8 45 140-185 10-55 (352)
141 COG4987 CydC ABC-type transpor 95.5 0.026 6.7E-07 35.8 4.6 37 153-189 356-392 (573)
142 PRK11248 tauB taurine transpor 95.4 0.01 2.6E-07 38.9 2.5 34 153-186 19-52 (255)
143 COG1136 SalX ABC-type antimicr 95.4 0.038 9.6E-07 34.7 5.3 57 153-209 23-84 (226)
144 PRK13648 cbiO cobalt transport 95.4 0.011 2.7E-07 38.6 2.5 33 153-185 27-59 (269)
145 PRK11432 fbpC ferric transport 95.4 0.017 4.4E-07 37.1 3.6 34 153-186 24-57 (351)
146 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.4 0.012 2.9E-07 38.4 2.7 34 153-186 21-54 (238)
147 cd03228 ABCC_MRP_Like The MRP 95.4 0.011 2.8E-07 38.6 2.5 33 154-186 21-53 (171)
148 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.4 0.011 2.7E-07 38.6 2.4 36 153-188 22-57 (218)
149 PRK11147 ABC transporter ATPas 95.4 0.012 3.1E-07 38.3 2.7 17 281-297 485-503 (632)
150 cd03261 ABC_Org_Solvent_Resist 95.4 0.012 3.1E-07 38.3 2.6 34 153-186 18-51 (235)
151 cd03260 ABC_PstB_phosphate_tra 95.4 0.013 3.3E-07 38.1 2.8 32 153-184 18-49 (227)
152 cd01121 Sms Sms (bacterial rad 95.3 0.1 2.7E-06 31.4 7.4 104 143-261 62-169 (372)
153 PRK10419 nikE nickel transport 95.3 0.012 3E-07 38.4 2.5 33 153-185 30-62 (266)
154 cd03250 ABCC_MRP_domain1 Domai 95.3 0.011 2.9E-07 38.5 2.4 32 153-184 23-54 (204)
155 cd03246 ABCC_Protease_Secretio 95.3 0.012 3E-07 38.3 2.5 34 153-186 20-53 (173)
156 PRK11701 phnK phosphonates tra 95.3 0.013 3.3E-07 38.0 2.7 33 153-185 24-56 (258)
157 cd03248 ABCC_TAP TAP, the Tran 95.3 0.012 3E-07 38.3 2.5 34 153-186 32-65 (226)
158 PRK09452 potA putrescine/sperm 95.3 0.023 5.9E-07 36.2 3.9 38 149-186 30-68 (378)
159 PRK10247 putative ABC transpor 95.3 0.013 3.4E-07 37.9 2.7 34 153-186 25-58 (225)
160 cd03291 ABCC_CFTR1 The CFTR su 95.3 0.013 3.2E-07 38.1 2.5 33 153-185 55-87 (282)
161 cd03222 ABC_RNaseL_inhibitor T 95.3 0.012 3.1E-07 38.3 2.4 33 152-184 16-48 (177)
162 PRK13637 cbiO cobalt transport 95.3 0.011 2.9E-07 38.5 2.2 35 151-185 22-57 (287)
163 cd03290 ABCC_SUR1_N The SUR do 95.3 0.013 3.3E-07 38.1 2.5 33 153-185 19-51 (218)
164 PRK10851 sulfate/thiosulfate t 95.2 0.013 3.4E-07 38.0 2.5 33 154-186 21-53 (352)
165 cd03256 ABC_PhnC_transporter A 95.2 0.014 3.5E-07 37.9 2.5 36 153-188 19-54 (241)
166 PRK11607 potG putrescine trans 95.2 0.025 6.3E-07 36.0 3.8 35 152-186 36-70 (377)
167 cd03297 ABC_ModC_molybdenum_tr 95.2 0.015 3.9E-07 37.5 2.8 35 153-188 16-50 (214)
168 PRK11000 maltose/maltodextrin 95.2 0.014 3.4E-07 37.9 2.5 33 153-185 21-53 (369)
169 cd03234 ABCG_White The White s 95.2 0.014 3.5E-07 37.9 2.5 33 153-185 25-57 (226)
170 PRK08118 topology modulation p 95.2 0.052 1.3E-06 33.6 5.5 48 162-209 2-53 (167)
171 PRK13633 cobalt transporter AT 95.2 0.014 3.7E-07 37.7 2.6 32 153-184 29-60 (281)
172 KOG1969 consensus 95.2 0.1 2.5E-06 31.6 6.9 86 161-246 325-421 (877)
173 TIGR03263 guanyl_kin guanylate 95.2 0.28 7.1E-06 28.3 9.3 84 161-257 1-99 (180)
174 COG1066 Sms Predicted ATP-depe 95.2 0.13 3.4E-06 30.7 7.5 56 143-199 73-131 (456)
175 PRK13635 cbiO cobalt transport 95.2 0.014 3.5E-07 37.9 2.4 33 153-185 25-57 (279)
176 cd03296 ABC_CysA_sulfate_impor 95.2 0.014 3.6E-07 37.8 2.5 39 150-188 16-55 (239)
177 PRK11831 putative ABC transpor 95.2 0.024 6.2E-07 36.0 3.7 34 153-186 26-59 (269)
178 cd03292 ABC_FtsE_transporter F 95.2 0.0087 2.2E-07 39.3 1.4 44 143-186 8-52 (214)
179 cd03251 ABCC_MsbA MsbA is an e 95.1 0.015 3.8E-07 37.6 2.5 33 153-185 20-52 (234)
180 TIGR02315 ABC_phnC phosphonate 95.1 0.018 4.5E-07 37.1 2.9 181 153-341 20-239 (253)
181 PRK11629 lolD lipoprotein tran 95.1 0.015 3.9E-07 37.5 2.6 34 153-186 27-60 (233)
182 PRK04841 transcriptional regul 95.1 0.29 7.3E-06 28.2 9.3 112 159-277 30-150 (903)
183 PRK13634 cbiO cobalt transport 95.1 0.013 3.4E-07 38.0 2.2 33 153-185 12-44 (276)
184 PRK11264 putative amino-acid A 95.1 0.017 4.4E-07 37.1 2.9 30 155-184 21-50 (248)
185 PRK11176 lipid transporter ATP 95.1 0.016 4.2E-07 37.3 2.7 37 151-187 357-394 (581)
186 PRK13546 teichoic acids export 95.1 0.016 4.1E-07 37.4 2.6 35 151-185 39-74 (264)
187 PRK13642 cbiO cobalt transport 95.1 0.015 3.9E-07 37.5 2.5 38 148-185 19-57 (277)
188 cd03225 ABC_cobalt_CbiO_domain 95.1 0.016 4.1E-07 37.3 2.6 32 153-184 19-50 (211)
189 PRK11174 cysteine/glutathione 95.1 0.017 4.3E-07 37.2 2.7 36 151-186 365-401 (588)
190 PRK07952 DNA replication prote 95.1 0.059 1.5E-06 33.2 5.5 87 143-260 80-169 (242)
191 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.016 4.1E-07 37.4 2.6 37 149-185 35-72 (224)
192 PRK13657 cyclic beta-1,2-gluca 95.1 0.018 4.5E-07 37.1 2.8 34 153-186 353-386 (585)
193 PRK10789 putative multidrug tr 95.1 0.02 5E-07 36.7 3.0 34 153-186 333-366 (569)
194 PRK13650 cbiO cobalt transport 95.1 0.015 3.9E-07 37.5 2.5 34 153-186 22-55 (276)
195 cd03233 ABC_PDR_domain1 The pl 95.1 0.027 6.9E-07 35.7 3.7 36 153-188 25-60 (202)
196 PRK10522 multidrug transporter 95.1 0.016 4.2E-07 37.3 2.6 34 153-186 341-374 (547)
197 cd03226 ABC_cobalt_CbiO_domain 95.0 0.017 4.4E-07 37.1 2.7 32 153-184 18-49 (205)
198 PRK07261 topology modulation p 95.0 0.059 1.5E-06 33.2 5.3 49 163-211 2-54 (171)
199 PRK09544 znuC high-affinity zi 95.0 0.023 5.7E-07 36.3 3.2 34 153-186 22-55 (251)
200 cd00544 CobU Adenosylcobinamid 95.0 0.16 4E-06 30.1 7.5 86 164-266 2-89 (169)
201 cd03244 ABCC_MRP_domain2 Domai 95.0 0.017 4.4E-07 37.1 2.5 34 153-186 22-55 (221)
202 COG3839 MalK ABC-type sugar tr 95.0 0.019 4.8E-07 36.8 2.7 32 153-184 21-52 (338)
203 PRK13646 cbiO cobalt transport 95.0 0.018 4.6E-07 37.0 2.6 32 153-184 25-56 (286)
204 cd03237 ABC_RNaseL_inhibitor_d 95.0 0.021 5.4E-07 36.5 3.0 185 157-358 21-238 (246)
205 cd03258 ABC_MetN_methionine_tr 95.0 0.015 3.9E-07 37.5 2.2 34 153-186 23-56 (233)
206 PRK13640 cbiO cobalt transport 95.0 0.017 4.3E-07 37.2 2.5 32 153-184 26-57 (283)
207 cd03245 ABCC_bacteriocin_expor 95.0 0.017 4.2E-07 37.3 2.4 33 153-185 22-54 (220)
208 PRK09493 glnQ glutamine ABC tr 95.0 0.018 4.7E-07 36.9 2.6 34 153-186 19-52 (240)
209 PRK13538 cytochrome c biogenes 95.0 0.019 4.9E-07 36.8 2.7 34 153-186 19-52 (204)
210 PRK11124 artP arginine transpo 95.0 0.019 4.7E-07 36.9 2.6 33 153-185 20-52 (242)
211 COG4172 ABC-type uncharacteriz 94.9 0.036 9.3E-07 34.8 4.0 127 149-288 300-428 (534)
212 PRK09984 phosphonate/organopho 94.9 0.019 4.9E-07 36.8 2.6 32 154-185 23-54 (262)
213 cd03231 ABC_CcmA_heme_exporter 94.9 0.022 5.5E-07 36.4 2.8 33 153-185 18-50 (201)
214 PRK13543 cytochrome c biogenes 94.9 0.02 5.1E-07 36.6 2.7 34 153-186 29-62 (214)
215 PRK10790 putative multidrug tr 94.9 0.026 6.7E-07 35.8 3.2 34 153-186 359-392 (593)
216 pfam01637 Arch_ATPase Archaeal 94.9 0.17 4.3E-06 29.9 7.4 96 159-263 18-122 (223)
217 PRK13632 cbiO cobalt transport 94.9 0.018 4.6E-07 37.0 2.4 31 154-184 29-59 (273)
218 PRK10575 iron-hydroxamate tran 94.9 0.02 5.2E-07 36.6 2.6 32 154-185 30-61 (265)
219 PRK13652 cbiO cobalt transport 94.9 0.019 4.8E-07 36.9 2.4 38 149-186 17-55 (277)
220 cd03224 ABC_TM1139_LivF_branch 94.8 0.041 1E-06 34.4 4.1 36 153-188 18-53 (222)
221 COG3638 ABC-type phosphate/pho 94.8 0.054 1.4E-06 33.5 4.7 55 154-208 23-82 (258)
222 PRK13542 consensus 94.8 0.044 1.1E-06 34.1 4.2 33 155-187 38-70 (224)
223 TIGR02211 LolD_lipo_ex lipopro 94.8 0.022 5.5E-07 36.4 2.6 27 156-182 26-52 (221)
224 PRK13651 cobalt transporter AT 94.8 0.023 5.8E-07 36.3 2.7 50 149-198 20-72 (304)
225 PRK11247 ssuB aliphatic sulfon 94.8 0.02 5E-07 36.7 2.4 33 153-185 30-62 (257)
226 pfam02283 CobU Cobinamide kina 94.8 0.18 4.7E-06 29.7 7.3 106 164-297 1-109 (166)
227 cd03235 ABC_Metallic_Cations A 94.8 0.023 5.8E-07 36.3 2.7 32 154-185 18-49 (213)
228 PRK13540 cytochrome c biogenes 94.7 0.024 6.1E-07 36.1 2.7 41 153-193 19-61 (200)
229 cd03288 ABCC_SUR2 The SUR doma 94.7 0.023 5.9E-07 36.2 2.6 42 153-194 39-82 (257)
230 COG1125 OpuBA ABC-type proline 94.7 0.035 9E-07 34.9 3.5 49 153-201 19-67 (309)
231 TIGR02203 MsbA_lipidA lipid A 94.7 0.032 8.1E-07 35.2 3.3 75 112-188 339-415 (603)
232 COG2274 SunT ABC-type bacterio 94.7 0.024 6.1E-07 36.1 2.7 33 153-185 491-523 (709)
233 PRK11288 araG L-arabinose tran 94.7 0.35 8.9E-06 27.6 8.6 55 251-308 255-311 (501)
234 PRK11819 putative ABC transpor 94.7 0.025 6.3E-07 36.0 2.7 17 36-52 23-39 (556)
235 cd03236 ABC_RNaseL_inhibitor_d 94.7 0.028 7.2E-07 35.6 3.0 28 159-186 24-51 (255)
236 COG0488 Uup ATPase components 94.7 0.032 8E-07 35.2 3.2 33 153-185 21-53 (530)
237 COG1126 GlnQ ABC-type polar am 94.7 0.027 7E-07 35.7 2.9 175 155-339 22-217 (240)
238 PRK10619 histidine/lysine/argi 94.7 0.045 1.1E-06 34.1 4.0 33 153-185 23-55 (257)
239 cd03254 ABCC_Glucan_exporter_l 94.7 0.023 6E-07 36.2 2.5 34 153-186 21-54 (229)
240 PRK05541 adenylylsulfate kinas 94.7 0.23 5.9E-06 28.9 7.6 88 160-265 6-94 (176)
241 PRK04195 replication factor C 94.7 0.18 4.6E-06 29.7 7.1 63 164-226 43-110 (403)
242 PRK13644 cbiO cobalt transport 94.6 0.025 6.3E-07 36.0 2.6 39 153-191 20-61 (274)
243 COG1120 FepC ABC-type cobalami 94.6 0.068 1.7E-06 32.8 4.8 34 153-186 20-53 (258)
244 CHL00131 ycf16 sulfate ABC tra 94.6 0.025 6.5E-07 35.9 2.6 32 153-184 24-55 (252)
245 PRK13647 cbiO cobalt transport 94.6 0.024 6.1E-07 36.1 2.5 36 150-185 19-55 (273)
246 TIGR00955 3a01204 Pigment prec 94.6 0.038 9.6E-07 34.6 3.5 40 160-199 57-100 (671)
247 PRK13547 hmuV hemin importer A 94.6 0.024 6.1E-07 36.1 2.4 33 153-185 19-51 (273)
248 PRK03695 vitamin B12-transport 94.6 0.024 6.1E-07 36.1 2.4 33 153-185 15-47 (245)
249 pfam00004 AAA ATPase family as 94.6 0.093 2.4E-06 31.8 5.4 27 164-190 1-27 (131)
250 PRK09580 sufC cysteine desulfu 94.6 0.027 7E-07 35.7 2.7 30 155-184 21-50 (248)
251 PRK13649 cbiO cobalt transport 94.6 0.024 6.1E-07 36.1 2.4 32 153-184 25-56 (280)
252 PRK13643 cbiO cobalt transport 94.6 0.023 6E-07 36.2 2.3 38 153-190 24-64 (288)
253 COG4619 ABC-type uncharacteriz 94.6 0.052 1.3E-06 33.6 4.1 65 155-242 23-87 (223)
254 PRK11153 metN DL-methionine tr 94.6 0.025 6.4E-07 35.9 2.5 33 153-185 23-55 (343)
255 KOG0057 consensus 94.5 0.049 1.2E-06 33.8 3.9 33 155-187 372-404 (591)
256 PRK11144 modC molybdate transp 94.5 0.022 5.5E-07 36.4 2.0 35 151-185 14-48 (352)
257 KOG2028 consensus 94.5 0.14 3.4E-06 30.6 6.1 75 163-269 164-241 (554)
258 PRK11308 dppF dipeptide transp 94.5 0.022 5.6E-07 36.4 2.0 44 149-192 28-74 (327)
259 PRK13548 hmuV hemin importer A 94.5 0.03 7.5E-07 35.4 2.7 33 153-185 20-52 (257)
260 PRK11231 fecE iron-dicitrate t 94.5 0.03 7.6E-07 35.4 2.7 32 154-185 21-52 (255)
261 PRK11614 livF leucine/isoleuci 94.5 0.035 8.8E-07 34.9 3.0 35 153-187 23-57 (237)
262 cd03217 ABC_FeS_Assembly ABC-t 94.4 0.031 7.8E-07 35.3 2.7 153 154-339 19-186 (200)
263 PRK10895 putative ABC transpor 94.4 0.03 7.7E-07 35.4 2.6 34 153-186 21-54 (241)
264 PRK09473 oppD oligopeptide tra 94.4 0.035 8.9E-07 34.9 2.9 56 131-186 8-67 (330)
265 TIGR03375 type_I_sec_LssB type 94.4 0.029 7.5E-07 35.4 2.5 19 313-331 522-540 (694)
266 COG4988 CydD ABC-type transpor 94.4 0.099 2.5E-06 31.6 5.2 38 151-188 337-374 (559)
267 TIGR03269 met_CoM_red_A2 methy 94.4 0.025 6.4E-07 35.9 2.2 17 36-52 16-32 (520)
268 PRK10908 cell division protein 94.4 0.028 7.1E-07 35.6 2.4 33 154-186 21-53 (222)
269 PRK13645 cbiO cobalt transport 94.4 0.03 7.6E-07 35.4 2.5 36 149-184 24-60 (289)
270 TIGR03410 urea_trans_UrtE urea 94.4 0.06 1.5E-06 33.2 4.0 45 153-197 18-62 (230)
271 cd03252 ABCC_Hemolysin The ABC 94.4 0.031 7.8E-07 35.3 2.5 43 153-195 20-64 (237)
272 cd03259 ABC_Carb_Solutes_like 94.3 0.033 8.5E-07 35.1 2.6 34 153-186 18-51 (213)
273 COG1127 Ttg2A ABC-type transpo 94.3 0.058 1.5E-06 33.3 3.8 39 154-192 27-68 (263)
274 PRK12422 chromosomal replicati 94.3 0.24 6.2E-06 28.7 7.0 21 164-184 144-164 (455)
275 cd03218 ABC_YhbG The ABC trans 94.3 0.034 8.7E-07 35.0 2.6 35 153-187 18-52 (232)
276 PRK13639 cbiO cobalt transport 94.3 0.033 8.5E-07 35.0 2.6 39 153-191 20-61 (275)
277 PRK13539 cytochrome c biogenes 94.3 0.043 1.1E-06 34.2 3.1 36 153-188 20-55 (206)
278 PRK11300 livG leucine/isoleuci 94.3 0.035 9E-07 34.9 2.7 39 148-186 17-56 (255)
279 cd03214 ABC_Iron-Siderophores_ 94.3 0.043 1.1E-06 34.2 3.1 34 153-186 17-50 (180)
280 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.038 9.8E-07 34.6 2.8 32 155-186 20-51 (144)
281 pfam01583 APS_kinase Adenylyls 94.2 0.41 1E-05 27.1 8.1 89 160-265 1-90 (157)
282 TIGR02324 CP_lyasePhnL phospho 94.2 0.035 8.8E-07 34.9 2.6 112 153-288 26-151 (224)
283 COG2874 FlaH Predicted ATPases 94.2 0.47 1.2E-05 26.7 13.1 159 160-344 27-194 (235)
284 PRK11022 dppD dipeptide transp 94.2 0.031 8E-07 35.2 2.3 36 149-184 20-56 (327)
285 cd03263 ABC_subfamily_A The AB 94.2 0.037 9.5E-07 34.7 2.7 39 153-191 20-61 (220)
286 PRK10253 iron-enterobactin tra 94.2 0.028 7.2E-07 35.6 2.1 33 154-186 26-58 (265)
287 PRK13636 cbiO cobalt transport 94.2 0.035 9E-07 34.8 2.5 37 148-184 18-55 (285)
288 PRK11288 araG L-arabinose tran 94.2 0.067 1.7E-06 32.8 3.9 17 36-52 20-36 (501)
289 cd00267 ABC_ATPase ABC (ATP-bi 94.1 0.038 9.6E-07 34.7 2.6 34 153-186 17-50 (157)
290 COG2909 MalT ATP-dependent tra 94.1 0.27 6.9E-06 28.4 7.0 69 143-211 19-88 (894)
291 TIGR02204 MsbA_rel ABC transpo 94.1 0.17 4.3E-06 29.9 5.9 107 144-253 348-469 (576)
292 TIGR03411 urea_trans_UrtD urea 94.1 0.041 1E-06 34.4 2.7 38 148-185 14-52 (242)
293 CHL00195 ycf46 Ycf46; Provisio 94.1 0.43 1.1E-05 26.9 8.0 98 151-257 251-366 (491)
294 TIGR00064 ftsY signal recognit 94.1 0.28 7.1E-06 28.3 7.0 83 164-255 85-171 (284)
295 COG0488 Uup ATPase components 94.1 0.051 1.3E-06 33.7 3.2 133 153-298 340-503 (530)
296 PRK09536 btuD corrinoid ABC tr 94.1 0.034 8.8E-07 34.9 2.3 32 154-185 21-52 (409)
297 COG1123 ATPase components of v 94.1 0.074 1.9E-06 32.5 4.0 46 149-194 304-352 (539)
298 PRK00411 cdc6 cell division co 94.1 0.5 1.3E-05 26.5 10.7 94 159-262 53-150 (394)
299 KOG0735 consensus 94.0 0.22 5.7E-06 29.0 6.4 108 149-257 419-547 (952)
300 COG1474 CDC6 Cdc6-related prot 94.0 0.5 1.3E-05 26.4 9.6 99 154-265 32-138 (366)
301 COG3840 ThiQ ABC-type thiamine 94.0 0.045 1.1E-06 34.1 2.8 33 155-187 19-51 (231)
302 COG1123 ATPase components of v 94.0 0.41 1.1E-05 27.1 7.7 45 264-310 305-351 (539)
303 TIGR01184 ntrCD nitrate ABC tr 94.0 0.039 1E-06 34.5 2.4 65 154-228 4-68 (230)
304 cd03232 ABC_PDR_domain2 The pl 94.0 0.041 1E-06 34.4 2.5 33 153-185 25-57 (192)
305 COG1134 TagH ABC-type polysacc 93.9 0.045 1.2E-06 34.1 2.7 32 153-184 45-76 (249)
306 PRK13409 putative ATPase RIL; 93.9 0.049 1.3E-06 33.8 2.8 26 158-183 96-121 (590)
307 PRK13544 consensus 93.9 0.083 2.1E-06 32.2 4.0 36 153-188 19-54 (208)
308 TIGR01186 proV glycine betaine 93.9 0.045 1.1E-06 34.1 2.6 37 147-185 7-43 (372)
309 TIGR02857 CydD ABC transporter 93.9 0.055 1.4E-06 33.5 3.0 62 147-208 361-428 (570)
310 PRK13641 cbiO cobalt transport 93.9 0.036 9.3E-07 34.8 2.1 33 153-185 25-57 (286)
311 COG4181 Predicted ABC-type tra 93.9 0.084 2.1E-06 32.1 4.0 42 156-197 31-72 (228)
312 PRK13549 xylose transporter AT 93.9 0.044 1.1E-06 34.2 2.5 19 35-53 20-38 (513)
313 cd03269 ABC_putative_ATPase Th 93.8 0.057 1.5E-06 33.3 3.0 40 153-192 18-60 (210)
314 cd03267 ABC_NatA_like Similar 93.7 0.049 1.3E-06 33.8 2.6 45 149-193 34-82 (236)
315 cd03213 ABCG_EPDR ABCG transpo 93.7 0.046 1.2E-06 34.0 2.4 31 153-183 27-57 (194)
316 PRK13545 tagH teichoic acids e 93.7 0.055 1.4E-06 33.5 2.8 32 153-184 42-73 (549)
317 KOG0727 consensus 93.7 0.035 9E-07 34.9 1.8 67 139-213 165-233 (408)
318 PRK13541 cytochrome c biogenes 93.7 0.049 1.2E-06 33.9 2.5 35 152-186 17-51 (195)
319 cd03271 ABC_UvrA_II The excisi 93.7 0.05 1.3E-06 33.8 2.5 28 154-181 14-41 (261)
320 PRK13638 cbiO cobalt transport 93.7 0.053 1.4E-06 33.6 2.7 31 155-185 21-51 (271)
321 TIGR01187 potA polyamine ABC t 93.6 0.037 9.4E-07 34.7 1.8 22 166-187 1-22 (331)
322 cd03219 ABC_Mj1267_LivG_branch 93.6 0.055 1.4E-06 33.5 2.6 34 153-186 18-51 (236)
323 PRK10261 glutathione transport 93.6 0.05 1.3E-06 33.8 2.4 32 154-185 343-374 (623)
324 COG1222 RPT1 ATP-dependent 26S 93.6 0.61 1.6E-05 25.8 8.8 147 43-213 73-229 (406)
325 PRK10938 putative molybdenum t 93.5 0.052 1.3E-06 33.6 2.4 30 153-182 278-307 (490)
326 COG4167 SapF ABC-type antimicr 93.5 0.056 1.4E-06 33.4 2.6 30 155-184 33-62 (267)
327 cd03230 ABC_DR_subfamily_A Thi 93.5 0.095 2.4E-06 31.7 3.8 34 153-186 18-51 (173)
328 cd03215 ABC_Carb_Monos_II This 93.5 0.041 1E-06 34.4 1.9 34 153-186 18-51 (182)
329 PRK10418 nikD nickel transport 93.5 0.05 1.3E-06 33.8 2.3 33 153-185 21-53 (254)
330 PRK09519 recA recombinase A; R 93.5 0.58 1.5E-05 26.0 7.7 14 255-268 543-556 (790)
331 PRK10762 D-ribose transporter 93.5 0.11 2.8E-06 31.3 3.9 91 251-353 255-347 (501)
332 cd01854 YjeQ_engC YjeQ/EngC. 93.4 0.083 2.1E-06 32.2 3.3 184 43-247 35-242 (287)
333 PRK05595 replicative DNA helic 93.4 0.15 3.9E-06 30.2 4.7 41 144-184 183-224 (444)
334 cd00071 GMPK Guanosine monopho 93.4 0.64 1.6E-05 25.7 8.3 91 164-268 2-107 (137)
335 TIGR02673 FtsE cell division A 93.4 0.075 1.9E-06 32.5 3.1 51 142-192 8-62 (215)
336 COG4525 TauB ABC-type taurine 93.4 0.067 1.7E-06 32.8 2.8 32 153-184 23-54 (259)
337 cd03216 ABC_Carb_Monos_I This 93.4 0.062 1.6E-06 33.1 2.7 34 153-186 18-51 (163)
338 COG0444 DppD ABC-type dipeptid 93.4 0.065 1.7E-06 32.9 2.8 95 149-248 18-118 (316)
339 COG1118 CysA ABC-type sulfate/ 93.4 0.066 1.7E-06 32.9 2.8 31 153-183 20-50 (345)
340 PRK10535 macrolide transporter 93.4 0.058 1.5E-06 33.3 2.5 12 245-256 304-315 (648)
341 TIGR02769 nickel_nikE nickel i 93.4 0.056 1.4E-06 33.4 2.4 28 155-182 32-59 (267)
342 TIGR01242 26Sp45 26S proteasom 93.4 0.11 2.9E-06 31.2 3.9 44 160-213 157-200 (364)
343 PRK10982 galactose/methyl gala 93.4 0.062 1.6E-06 33.1 2.6 183 158-353 149-343 (491)
344 COG1132 MdlB ABC-type multidru 93.3 0.083 2.1E-06 32.2 3.2 34 154-187 348-381 (567)
345 pfam03193 DUF258 Protein of un 93.3 0.085 2.2E-06 32.1 3.2 35 151-185 25-59 (161)
346 TIGR02858 spore_III_AA stage I 93.3 0.067 1.7E-06 32.8 2.7 77 143-220 104-189 (282)
347 TIGR00968 3a0106s01 sulfate AB 93.3 0.099 2.5E-06 31.6 3.5 43 154-196 19-61 (241)
348 cd03265 ABC_DrrA DrrA is the A 93.3 0.067 1.7E-06 32.8 2.6 40 153-192 18-60 (220)
349 PRK06217 hypothetical protein; 93.2 0.11 2.7E-06 31.4 3.6 149 162-332 2-174 (185)
350 TIGR01846 type_I_sec_HlyB type 93.2 0.056 1.4E-06 33.4 2.1 31 153-183 483-513 (703)
351 COG1131 CcmA ABC-type multidru 93.2 0.13 3.4E-06 30.7 4.0 45 154-198 24-68 (293)
352 TIGR00750 lao LAO/AO transport 93.2 0.13 3.2E-06 30.8 3.9 42 152-193 28-73 (333)
353 PTZ00265 multidrug resistance 93.1 0.075 1.9E-06 32.5 2.7 37 150-186 399-436 (1467)
354 cd02027 APSK Adenosine 5'-phos 93.1 0.61 1.6E-05 25.8 7.3 83 165-264 3-86 (149)
355 PRK13536 nodulation factor exp 93.1 0.074 1.9E-06 32.5 2.6 40 153-192 25-67 (306)
356 COG0194 Gmk Guanylate kinase [ 93.0 0.73 1.9E-05 25.3 11.4 88 160-258 3-102 (191)
357 COG1162 Predicted GTPases [Gen 93.0 0.083 2.1E-06 32.2 2.8 33 151-183 154-186 (301)
358 COG1117 PstB ABC-type phosphat 93.0 0.089 2.3E-06 31.9 2.9 34 153-186 25-58 (253)
359 PRK13537 lipooligosaccharide t 93.0 0.14 3.7E-06 30.4 4.0 40 153-192 23-65 (304)
360 COG1122 CbiO ABC-type cobalt t 93.0 0.076 1.9E-06 32.4 2.6 31 153-183 22-52 (235)
361 PRK13409 putative ATPase RIL; 93.0 0.1 2.6E-06 31.5 3.2 15 98-112 111-125 (590)
362 PRK10787 DNA-binding ATP-depen 92.9 0.22 5.5E-06 29.1 4.8 47 152-198 340-386 (784)
363 cd03238 ABC_UvrA The excision 92.9 0.081 2.1E-06 32.2 2.6 30 154-183 14-43 (176)
364 PRK09700 D-allose transporter 92.9 0.077 2E-06 32.4 2.5 184 157-355 159-360 (510)
365 cd03264 ABC_drug_resistance_li 92.8 0.18 4.5E-06 29.8 4.3 40 153-193 18-60 (211)
366 PRK05800 cobU adenosylcobinami 92.8 0.77 2E-05 25.1 10.0 88 161-265 1-91 (170)
367 COG4136 ABC-type uncharacteriz 92.8 0.15 3.8E-06 30.3 3.9 93 154-246 21-129 (213)
368 PRK08084 DNA replication initi 92.8 0.29 7.4E-06 28.2 5.3 40 159-198 43-84 (235)
369 PRK00098 ribosome-associated G 92.8 0.11 2.8E-06 31.2 3.2 33 152-184 155-187 (298)
370 PRK08082 consensus 92.8 0.24 6.1E-06 28.8 4.8 41 144-184 185-226 (453)
371 PRK08506 replicative DNA helic 92.7 0.21 5.2E-06 29.3 4.5 50 144-194 175-229 (473)
372 TIGR03522 GldA_ABC_ATP gliding 92.7 0.089 2.3E-06 31.9 2.6 34 153-186 20-53 (301)
373 COG4608 AppF ABC-type oligopep 92.7 0.084 2.1E-06 32.1 2.4 46 149-194 26-74 (268)
374 PRK10261 glutathione transport 92.7 0.17 4.4E-06 29.8 4.0 31 264-294 338-370 (623)
375 KOG1433 consensus 92.7 0.62 1.6E-05 25.8 6.9 115 137-261 85-211 (326)
376 PRK03846 adenylylsulfate kinas 92.7 0.81 2.1E-05 24.9 7.8 88 160-264 23-111 (198)
377 COG4178 ABC-type uncharacteriz 92.7 0.11 2.7E-06 31.4 2.9 34 150-183 408-441 (604)
378 PRK08006 replicative DNA helic 92.6 0.25 6.4E-06 28.7 4.8 51 144-194 206-261 (471)
379 PRK12289 ribosome-associated G 92.6 0.12 2.9E-06 31.1 3.1 158 21-185 8-195 (351)
380 TIGR03600 phage_DnaB phage rep 92.6 0.23 5.9E-06 28.9 4.6 41 144-184 176-217 (421)
381 TIGR00763 lon ATP-dependent pr 92.6 0.16 4.1E-06 30.1 3.8 49 154-204 442-491 (941)
382 TIGR01271 CFTR_protein cystic 92.6 0.12 3E-06 31.0 3.1 83 146-232 1270-1359(1534)
383 cd03268 ABC_BcrA_bacitracin_re 92.6 0.099 2.5E-06 31.6 2.7 34 153-186 18-51 (208)
384 PRK05748 replicative DNA helic 92.6 0.25 6.4E-06 28.6 4.8 42 144-185 185-227 (448)
385 COG4618 ArpD ABC-type protease 92.6 0.24 6.2E-06 28.8 4.7 31 153-183 354-384 (580)
386 KOG0060 consensus 92.5 0.074 1.9E-06 32.5 2.0 12 341-352 516-529 (659)
387 KOG0055 consensus 92.5 0.17 4.3E-06 29.9 3.8 39 148-186 365-404 (1228)
388 cd04150 Arf1_5_like Arf1-Arf5- 92.5 0.74 1.9E-05 25.2 7.1 95 163-277 2-98 (159)
389 cd04149 Arf6 Arf6 subfamily. 92.5 0.41 1.1E-05 27.1 5.7 95 162-276 10-106 (168)
390 cd03278 ABC_SMC_barmotin Barmo 92.4 0.12 3E-06 31.0 2.9 26 156-182 18-43 (197)
391 pfam00625 Guanylate_kin Guanyl 92.4 0.87 2.2E-05 24.7 7.6 90 165-269 5-110 (182)
392 COG1135 AbcC ABC-type metal io 92.4 0.1 2.6E-06 31.5 2.6 61 148-208 18-84 (339)
393 PRK01889 ribosome-associated G 92.4 0.13 3.2E-06 30.8 3.1 33 151-183 183-216 (353)
394 pfam01695 IstB IstB-like ATP b 92.4 0.12 3.1E-06 31.0 2.9 55 150-211 36-92 (178)
395 PRK05642 DNA replication initi 92.3 0.89 2.3E-05 24.6 7.7 31 164-194 48-80 (234)
396 COG2255 RuvB Holliday junction 92.3 0.24 6.1E-06 28.8 4.4 27 163-189 54-80 (332)
397 PRK12288 ribosome-associated G 92.3 0.12 2.9E-06 31.1 2.8 33 152-184 198-230 (344)
398 cd03266 ABC_NatA_sodium_export 92.3 0.13 3.4E-06 30.7 3.1 38 150-187 19-57 (218)
399 TIGR00929 VirB4_CagE type IV s 92.3 0.14 3.6E-06 30.4 3.2 23 164-186 519-545 (931)
400 COG0466 Lon ATP-dependent Lon 92.2 0.28 7E-06 28.3 4.6 45 154-198 343-387 (782)
401 PRK13549 xylose transporter AT 92.2 0.11 2.8E-06 31.2 2.6 25 157-181 284-308 (513)
402 TIGR02982 heterocyst_DevA ABC 92.2 0.1 2.6E-06 31.5 2.4 105 153-260 23-143 (220)
403 PRK08233 hypothetical protein; 92.1 0.22 5.5E-06 29.1 3.9 26 163-188 5-30 (182)
404 KOG0062 consensus 92.1 0.097 2.5E-06 31.6 2.2 32 153-184 98-129 (582)
405 cd04102 RabL3 RabL3 (Rab-like3 92.1 0.15 3.7E-06 30.4 3.0 23 163-185 2-24 (202)
406 pfam03308 ArgK ArgK protein. T 92.0 0.26 6.6E-06 28.5 4.3 96 151-257 18-129 (267)
407 COG0563 Adk Adenylate kinase a 92.0 0.15 3.8E-06 30.3 3.1 90 162-269 1-96 (178)
408 TIGR01193 bacteriocin_ABC ABC- 91.9 0.12 3.1E-06 31.0 2.5 88 153-244 492-592 (710)
409 KOG0055 consensus 91.9 0.27 7E-06 28.4 4.3 22 202-223 524-546 (1228)
410 PRK13873 conjugal transfer ATP 91.8 0.24 6.1E-06 28.8 3.9 29 162-190 442-474 (815)
411 COG0552 FtsY Signal recognitio 91.8 0.78 2E-05 25.1 6.5 84 162-255 140-227 (340)
412 PRK08840 replicative DNA helic 91.8 0.34 8.7E-06 27.7 4.7 42 143-184 198-240 (464)
413 TIGR03420 DnaA_homol_Hda DnaA 91.8 0.49 1.2E-05 26.5 5.5 44 152-195 29-74 (226)
414 PRK00889 adenylylsulfate kinas 91.8 1 2.6E-05 24.2 8.1 91 159-266 2-93 (175)
415 PRK06749 replicative DNA helic 91.7 0.4 1E-05 27.2 4.9 42 143-184 167-209 (428)
416 cd02023 UMPK Uridine monophosp 91.7 0.26 6.7E-06 28.5 4.0 24 164-187 2-25 (198)
417 TIGR01166 cbiO cobalt ABC tran 91.7 0.13 3.4E-06 30.7 2.5 34 149-182 5-39 (190)
418 TIGR03269 met_CoM_red_A2 methy 91.6 0.15 3.7E-06 30.4 2.6 26 156-181 21-46 (520)
419 PRK07263 consensus 91.6 0.43 1.1E-05 26.9 5.0 42 144-185 185-227 (453)
420 TIGR02640 gas_vesic_GvpN gas v 91.5 0.23 5.9E-06 28.9 3.6 114 164-293 24-152 (265)
421 COG4586 ABC-type uncharacteriz 91.5 0.19 4.7E-06 29.6 3.0 52 150-201 39-93 (325)
422 PRK10762 D-ribose transporter 91.4 0.15 3.9E-06 30.3 2.5 28 156-183 273-300 (501)
423 PRK09165 replicative DNA helic 91.4 0.32 8.1E-06 27.9 4.2 43 143-185 186-229 (484)
424 PRK00149 dnaA chromosomal repl 91.3 0.4 1E-05 27.1 4.6 30 164-193 148-181 (447)
425 cd04162 Arl9_Arfrp2_like Arl9/ 91.2 1.1 2.7E-05 24.1 6.7 96 163-277 1-98 (164)
426 PRK00300 gmk guanylate kinase; 91.2 1.2 3E-05 23.8 10.4 87 158-257 4-106 (208)
427 PRK09700 D-allose transporter 91.1 0.28 7E-06 28.4 3.6 29 156-184 284-312 (510)
428 cd03270 ABC_UvrA_I The excisio 91.1 0.14 3.5E-06 30.5 2.1 29 153-181 13-42 (226)
429 COG1119 ModF ABC-type molybden 91.1 0.28 7E-06 28.4 3.6 40 154-193 50-92 (257)
430 PRK13830 conjugal transfer pro 91.0 0.31 7.8E-06 28.0 3.8 30 163-192 458-491 (818)
431 PRK00080 ruvB Holliday junctio 91.0 0.47 1.2E-05 26.7 4.7 28 163-190 53-80 (328)
432 COG4148 ModC ABC-type molybdat 91.0 0.19 4.9E-06 29.5 2.7 49 148-196 11-59 (352)
433 PRK06904 replicative DNA helic 90.9 0.47 1.2E-05 26.7 4.6 41 144-184 203-244 (472)
434 PTZ00243 ABC transporter; Prov 90.9 0.17 4.5E-06 29.8 2.5 32 153-184 678-709 (1560)
435 pfam07726 AAA_3 ATPase family 90.9 0.33 8.5E-06 27.8 3.9 30 164-193 2-31 (131)
436 PTZ00133 ADP-ribosylation fact 90.9 0.86 2.2E-05 24.7 6.0 95 163-277 19-115 (182)
437 cd04158 ARD1 ARD1 subfamily. 90.9 1 2.7E-05 24.1 6.4 94 163-276 1-96 (169)
438 KOG0737 consensus 90.8 0.67 1.7E-05 25.5 5.4 86 158-245 126-218 (386)
439 cd02028 UMPK_like Uridine mono 90.8 0.22 5.6E-06 29.1 2.9 22 164-185 2-23 (179)
440 cd02024 NRK1 Nicotinamide ribo 90.8 0.33 8.3E-06 27.8 3.7 23 164-186 2-24 (187)
441 PRK13891 conjugal transfer pro 90.8 0.33 8.5E-06 27.7 3.8 30 163-192 490-523 (852)
442 COG1100 GTPase SAR1 and relate 90.7 0.22 5.7E-06 29.0 2.9 26 162-187 6-31 (219)
443 PRK10982 galactose/methyl gala 90.7 0.29 7.4E-06 28.2 3.4 28 156-183 269-296 (491)
444 smart00177 ARF ARF-like small 90.7 1.1 2.9E-05 23.9 6.4 94 163-276 15-110 (175)
445 pfam06414 Zeta_toxin Zeta toxi 90.7 1.3 3.3E-05 23.4 7.9 84 166-257 17-124 (191)
446 COG4555 NatA ABC-type Na+ tran 90.6 0.36 9.3E-06 27.5 3.9 33 152-184 19-51 (245)
447 cd01122 GP4d_helicase GP4d_hel 90.6 0.52 1.3E-05 26.4 4.6 42 143-184 11-53 (271)
448 PRK05201 hslU ATP-dependent pr 90.6 0.54 1.4E-05 26.2 4.7 66 133-208 32-102 (442)
449 cd03227 ABC_Class2 ABC-type Cl 90.5 0.48 1.2E-05 26.6 4.4 26 157-182 17-42 (162)
450 PRK08760 replicative DNA helic 90.4 0.45 1.2E-05 26.8 4.2 42 144-185 211-253 (476)
451 TIGR00067 glut_race glutamate 90.4 1.4 3.5E-05 23.3 9.4 109 163-272 2-132 (262)
452 PRK10309 galactitol-1-phosphat 90.4 0.94 2.4E-05 24.5 5.8 115 76-196 70-194 (347)
453 TIGR03598 GTPase_YsxC ribosome 90.4 1.4 3.5E-05 23.3 9.0 29 156-184 13-41 (179)
454 pfam08477 Miro Miro-like prote 90.3 0.27 6.8E-06 28.5 3.0 23 163-185 1-23 (118)
455 PRK05480 uridine kinase; Provi 90.3 0.42 1.1E-05 27.0 4.0 23 164-186 9-31 (209)
456 PRK08694 consensus 90.3 0.37 9.5E-06 27.4 3.7 42 144-185 200-242 (468)
457 COG0410 LivF ABC-type branched 90.2 0.51 1.3E-05 26.4 4.3 40 154-193 22-63 (237)
458 cd03240 ABC_Rad50 The catalyti 90.2 0.3 7.6E-06 28.1 3.1 26 160-185 21-46 (204)
459 cd04101 RabL4 RabL4 (Rab-like4 90.2 0.28 7.2E-06 28.3 3.0 22 163-184 2-23 (164)
460 PRK07004 replicative DNA helic 90.1 0.58 1.5E-05 26.0 4.6 42 144-185 195-237 (460)
461 COG0464 SpoVK ATPases of the A 90.1 1.4 3.6E-05 23.2 6.5 49 140-188 253-303 (494)
462 PRK07429 phosphoribulokinase; 90.1 0.49 1.3E-05 26.5 4.2 31 164-194 11-42 (331)
463 PRK09435 arginine/ornithine tr 90.0 0.5 1.3E-05 26.5 4.2 104 151-257 38-149 (325)
464 PRK06835 DNA replication prote 90.0 0.49 1.3E-05 26.5 4.1 69 134-211 158-228 (330)
465 KOG3062 consensus 90.0 1.5 3.7E-05 23.1 8.1 87 241-333 64-176 (281)
466 PRK06321 replicative DNA helic 90.0 0.59 1.5E-05 25.9 4.5 52 143-194 207-263 (472)
467 cd01861 Rab6 Rab6 subfamily. 89.9 0.32 8.1E-06 27.9 3.1 24 162-185 1-24 (161)
468 TIGR02788 VirB11 P-type DNA tr 89.9 0.41 1.1E-05 27.1 3.7 142 157-340 154-312 (328)
469 pfam07728 AAA_5 AAA domain (dy 89.9 0.32 8.1E-06 27.9 3.1 34 164-197 2-35 (139)
470 KOG0735 consensus 89.9 0.7 1.8E-05 25.4 4.8 24 164-187 704-727 (952)
471 KOG0651 consensus 89.8 0.75 1.9E-05 25.2 5.0 45 164-208 169-220 (388)
472 PRK10416 cell division protein 89.8 1.5 3.8E-05 23.0 8.7 86 163-258 297-385 (499)
473 TIGR01978 sufC FeS assembly AT 89.8 0.3 7.6E-06 28.1 2.9 105 156-274 21-131 (248)
474 KOG0061 consensus 89.8 0.39 9.9E-06 27.3 3.4 30 158-187 53-82 (613)
475 pfam03969 AFG1_ATPase AFG1-lik 89.8 0.59 1.5E-05 25.9 4.4 21 164-184 64-84 (361)
476 KOG2383 consensus 89.7 0.87 2.2E-05 24.7 5.2 52 211-262 218-270 (467)
477 COG1484 DnaC DNA replication p 89.7 0.48 1.2E-05 26.6 3.9 45 160-211 104-150 (254)
478 cd01875 RhoG RhoG subfamily. 89.7 0.34 8.6E-06 27.7 3.1 23 163-185 5-27 (191)
479 cd01428 ADK Adenylate kinase ( 89.7 0.32 8E-06 27.9 2.9 33 163-198 1-33 (194)
480 cd04134 Rho3 Rho3 subfamily. 89.7 0.34 8.7E-06 27.7 3.1 24 162-185 1-24 (189)
481 PRK10078 ribose 1,5-bisphospho 89.6 0.53 1.3E-05 26.3 4.0 27 161-187 2-28 (184)
482 PTZ00301 uridine kinase; Provi 89.6 0.32 8.2E-06 27.9 2.9 20 164-183 6-25 (210)
483 PRK05636 replicative DNA helic 89.5 0.59 1.5E-05 25.9 4.2 41 144-185 249-291 (507)
484 PRK08181 transposase; Validate 89.5 0.33 8.3E-06 27.8 2.9 119 157-329 102-222 (269)
485 PRK00440 rfc replication facto 89.5 1.6 4.1E-05 22.8 6.6 22 164-185 40-61 (318)
486 cd04127 Rab27A Rab27a subfamil 89.5 0.34 8.8E-06 27.7 3.0 23 163-185 6-28 (180)
487 COG4604 CeuD ABC-type enteroch 89.5 0.38 9.6E-06 27.4 3.2 37 153-189 19-55 (252)
488 PRK00454 engB GTPase EngB; Rev 89.4 1.6 4.1E-05 22.7 9.4 39 145-184 9-47 (196)
489 KOG0927 consensus 89.4 0.27 6.8E-06 28.5 2.4 33 152-184 92-124 (614)
490 cd01882 BMS1 Bms1. Bms1 is an 89.3 1.6 4.2E-05 22.7 6.4 21 164-184 42-62 (225)
491 cd00876 Ras Ras family. The R 89.3 0.35 8.8E-06 27.6 2.9 23 163-185 1-23 (160)
492 smart00072 GuKc Guanylate kina 89.2 1.2 3.1E-05 23.7 5.6 89 165-268 6-110 (184)
493 cd00157 Rho Rho (Ras homology) 89.2 0.37 9.4E-06 27.4 3.0 23 163-185 2-24 (171)
494 COG2087 CobU Adenosyl cobinami 89.2 1.7 4.3E-05 22.6 7.2 88 163-266 2-91 (175)
495 cd00879 Sar1 Sar1 subfamily. 89.2 1.6 4.2E-05 22.7 6.3 97 159-275 17-115 (190)
496 PRK10733 hflB ATP-dependent me 89.1 0.81 2.1E-05 24.9 4.7 27 158-186 184-210 (644)
497 TIGR01447 recD exodeoxyribonuc 89.1 0.32 8.2E-06 27.9 2.6 175 155-335 236-459 (753)
498 PRK05342 clpX ATP-dependent pr 89.1 0.66 1.7E-05 25.6 4.2 75 162-265 110-189 (411)
499 TIGR00956 3a01205 Pleiotropic 89.1 0.31 7.8E-06 28.0 2.5 26 161-186 853-878 (1466)
500 COG0572 Udk Uridine kinase [Nu 89.1 0.58 1.5E-05 26.0 3.9 31 164-194 11-42 (218)
No 1
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=100.00 E-value=0 Score=1159.12 Aligned_cols=415 Identities=45% Similarity=0.711 Sum_probs=394.6
Q ss_pred EEEEEEEEEECCEEEEECCCCCCCC---CCEEEEECC-C---CCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC--
Q ss_conf 2012899995258999826888873---518999569-9---607999997419979999804855746788899728--
Q gi|254780684|r 21 VQGGYISSITSVYYTVTCLSQYVCL---GDFVVHQGK-N---SDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWG-- 91 (438)
Q Consensus 21 ~~~G~V~~V~G~ii~v~Gl~~~v~i---Gelv~i~~~-~---~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g-- 91 (438)
..+|+|++|.|.++++.|+ .+.+ |++|.|... + ..+.||||||+++.+++|||++.+||.+|++|+..+
T Consensus 2 ~~~G~V~~v~G~~~e~~Gp--~~~~~~~G~~c~i~~~~~g~~~~~~aEVvGF~~~~~~lmP~~~~~Gi~~G~~V~~~~~~ 79 (439)
T TIGR02545 2 RIVGRVTKVAGLTVEVAGP--KAAVARLGDLCEIEPQEGGEEKHVLAEVVGFEGDRVILMPYEPLEGIRPGDRVFLLGDI 79 (439)
T ss_pred CEEEEEEEEECCEEEEECC--CCCEEECCCEEEEECCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 1588999988438898544--21302136278996588852101568999873883698644655562457657863431
Q ss_pred -----C-CEEECCHHHHHHHHHHHHHHCCC---CCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -----8-55524666886543077630478---87775553012112543330001331100111245875200223585
Q gi|254780684|r 92 -----R-FRISPSACWCGRVINALGKPIDG---DDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162 (438)
Q Consensus 92 -----~-~~i~vG~~lLGRViD~lG~PlDg---~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQ 162 (438)
+ +.++||++|||||||+||+|||| ++++.....++|+.+++|||++|++|.+||+|||||||+|+||||||
T Consensus 80 ad~~~~~~~~~~G~~LLGRv~D~lG~PlDg~G~~~~~~~~~~~~~l~~~~pnpl~R~rI~~~l~tGVRaId~lLT~GrGQ 159 (439)
T TIGR02545 80 ADAGGRSLSIPVGDELLGRVIDALGRPLDGKGAGGGLIDATVYRPLRREPPNPLDRRRIEEVLDTGVRAIDALLTIGRGQ 159 (439)
T ss_pred CCCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 46545664202774440323867878657877888766565555656783074678757861121231011103655641
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 0375266788999999998740789838993124652238899998642-775532898415778803444444567778
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTI 241 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~i 241 (438)
|+||||||||||||||+|||||++|||+|+||||||||||+||+|+.|+ +||+||||||||||+||++|++|||+|++|
T Consensus 160 R~GIFAGSGVGKSTLLGMiAr~t~ADV~VIALIGERGREV~EFiE~~LG~eGl~kSVVVVATSD~spl~R~~aA~~A~~i 239 (439)
T TIGR02545 160 RLGIFAGSGVGKSTLLGMIARYTEADVNVIALIGERGREVKEFIEDDLGEEGLKKSVVVVATSDESPLMRIRAAYAATAI 239 (439)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 02663377444788988875066588789984446566431355430351102540799827998689998888999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHH--CCCCCCCCEEEEEEEEECCCC
Q ss_conf 888642679889997098999999876654047784323663245542004444431--136788523554333421676
Q gi|254780684|r 242 AEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIG--PSEKEKGNITAVISVLVDGDN 319 (438)
Q Consensus 242 AEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag--~~~~~~GSiT~~~~v~~~~dd 319 (438)
|||||||||||||+|||+||||+|+|||||++||||+.||||||||+.||+|+|||| +..+++||||+||||||||||
T Consensus 240 AEYFRDqGk~VLL~~DSlTRFAmAqREigLa~GEPP~tkGYpPSVF~~Lp~L~ERaG~~p~~~~~GsITa~yTVLVeGDD 319 (439)
T TIGR02545 240 AEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFSELPRLLERAGIVPGAKGGGSITAFYTVLVEGDD 319 (439)
T ss_pred HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCC
T ss_conf 99998649834776211788998988999871787666789704899999999870864698887305689999873689
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 42027899986126089870427758971311445640002212089999999999999999999999999852344699
Q gi|254780684|r 320 HNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV 399 (438)
Q Consensus 320 ~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~ 399 (438)
++|||+|++||||||||||||+||++|||||||++.|+||+|+++++++|++++.++|++++.|+++||||++|+|+.|+
T Consensus 320 ~~ePiAD~~RgiLDGHIvLsR~lA~~G~YPaIDvl~SiSR~m~~i~~~e~~~~a~~~r~l~a~Y~~~eDLi~iGaY~~GS 399 (439)
T TIGR02545 320 MNEPIADAVRGILDGHIVLSRKLAERGHYPAIDVLRSISRLMPDIVSPEHNKAARKLRKLLATYKDAEDLIRIGAYKKGS 399 (439)
T ss_pred CCCHHHHHHHHHCCCEEEECHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98737877500102207732267645889875722227887776279889999999999999888889999817864688
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 98999999999999998359988899976-899999870
Q gi|254780684|r 400 DLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 400 d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
||++|+||+++++|++||+|+.+|..+++ +++++.+.+
T Consensus 400 dp~~D~AI~~~p~i~~FL~Q~~~E~~~~~~~~~~L~~i~ 438 (439)
T TIGR02545 400 DPEVDKAIKLYPKIEAFLRQDIEEASSFEESLEALKEIL 438 (439)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 878999851002589984679754557789999999982
No 2
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=100.00 E-value=0 Score=1152.56 Aligned_cols=412 Identities=44% Similarity=0.706 Sum_probs=394.2
Q ss_pred CEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEEC----CCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-C
Q ss_conf 21201289999525899982688887351899956----996079999974199799998048557467888997288-5
Q gi|254780684|r 19 LVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQG----KNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-F 93 (438)
Q Consensus 19 l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~----~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~ 93 (438)
.+...|+|++|.|.+++|..+ .|++||+|.|++ +....+||||||.++.++|+||++..||..|++|.++|+ +
T Consensus 2 ~~~~~Grv~~v~G~Ll~A~lP--~a~vGELC~i~~nW~~~~~~~~AEVVGf~~~~alLsPlg~~~G~~~g~~V~p~g~~~ 79 (430)
T TIGR02546 2 LVRVRGRVTEVSGTLLKAVLP--GARVGELCLIKRNWPRDPSQLLAEVVGFTGDEALLSPLGELSGISPGSEVIPTGRPL 79 (430)
T ss_pred CCEEEEEEEEECCEEEEEECC--CEEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEECCCCE
T ss_conf 831476677521338999817--606740345522378985661378998727867760266533256566786258420
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCC------EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 552466688654307763047887775553------01211254333000133110011124587520022358503752
Q gi|254780684|r 94 RISPSACWCGRVINALGKPIDGDDSLGKGD------LSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVF 167 (438)
Q Consensus 94 ~i~vG~~lLGRViD~lG~PlDg~~~l~~~~------~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIf 167 (438)
+|+|||+|||||||+||+|||++++++..+ +.+|+.++|||||.|++|++||.||||+||+|+|||+|||+|||
T Consensus 80 ~i~vGe~LLGRVlDG~GrPlD~~~~~~~~~~~Qvt~~~~p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG~GQRiGIF 159 (430)
T TIGR02546 80 SIRVGEALLGRVLDGFGRPLDGKGELPAGEIRQVTGETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIF 159 (430)
T ss_pred EEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 22106000320045657703788878755643024645765678104876753346510146675434403665305787
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 66788999999998740789838993124652238899998642-77553289841577880344444456777888864
Q gi|254780684|r 168 AGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFS 246 (438)
Q Consensus 168 g~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr 246 (438)
|++||||||||+||++++++|+||+||||||||||+||+|..++ ++|+|||+||+|||+|+++|.+|+|+|||||||||
T Consensus 160 A~aG~GKSTLL~~i~~g~~ADv~V~ALIGERGREVREFiE~~lg~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIAEYFR 239 (430)
T TIGR02546 160 AGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHLLGEEGRKRSVLVVSTSDRSSLERLKAAYTATAIAEYFR 239 (430)
T ss_pred ECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 08886166899998618988789986027876047888752078305242489960798667999999878879999999
Q ss_pred HCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHH
Q ss_conf 26798899970989999998766540477843236632455420044444311367885235543334216764202789
Q gi|254780684|r 247 SKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIAD 326 (438)
Q Consensus 247 ~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~ 326 (438)
||||+||||||||||||+|+|||+|+.||||+|+|||||||+.||||+||||+ +++||||||||||+++||++|||+|
T Consensus 240 DQGk~VlLmmDSlTRfARA~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~--~e~GSITA~YTVLvEgDd~~dP~AD 317 (430)
T TIGR02546 240 DQGKRVLLMMDSLTRFARALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGN--SEKGSITALYTVLVEGDDMNDPIAD 317 (430)
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCC--CCCCCEEEEEEEEECCCCCCCCHHH
T ss_conf 73990798840277999998778875378400257787366507501227861--1296253456787627779984366
Q ss_pred HHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99861260898704277589713114456400022120899999999999999999999999998523446999899999
Q gi|254780684|r 327 SVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKA 406 (438)
Q Consensus 327 ~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~ 406 (438)
++||||||||||||+||+++|||||||+.|+||+|+++++++|++.|.++|++|++|+|+|+||++|+|+.|+|+++|+|
T Consensus 318 EvRSILDGHIvLsR~LA~~~HyPAIDVLaS~SRvm~~vv~~eH~~aA~~lR~LLA~Y~e~e~LI~lGEY~~G~D~~~D~A 397 (430)
T TIGR02546 318 EVRSILDGHIVLSRKLAERNHYPAIDVLASLSRVMSQVVSKEHRRAAGKLRRLLAKYKEVELLIRLGEYQPGSDPETDKA 397 (430)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 55445423689989997416886356652366423677887899999999999999999988987448889989889999
Q ss_pred HHHHHHHHHHHCCCCCCCCCHH-HHHHHH
Q ss_conf 9999999998359988899976-899999
Q gi|254780684|r 407 VHQVPIIYDFLKQSPSDLSSED-VFQEIT 434 (438)
Q Consensus 407 i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~ 434 (438)
|++.+.|++||+|+.+|+++|| +.+++.
T Consensus 398 ~~~~~~i~~FL~Q~~~E~~~~e~tl~~L~ 426 (430)
T TIGR02546 398 IDKIDAIRAFLRQSTDEKSSYEETLEQLH 426 (430)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 97577889871488877789899999999
No 3
>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714 Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below. The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , . The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1133.63 Aligned_cols=432 Identities=42% Similarity=0.646 Sum_probs=405.7
Q ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC---CCCEEEEEEEECCCEEEEEECC
Q ss_conf 923699999999-741334212012899995258999826888873518999569---9607999997419979999804
Q gi|254780684|r 1 MQKNLETLAQLA-EDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK---NSDNLGQVIRINLDIVYICPVG 76 (438)
Q Consensus 1 m~~~l~~l~~~~-~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~---~~~v~geVi~~~~~~~~l~~~~ 76 (438)
|+.++....... +..+.+.+..+|+|++|.|.+|++.|+ .+.|||+|.|+.. .+.+.||||||+++.+.+|||+
T Consensus 1 m~~~~~~~~~~~~~~~d~~~~~~~G~v~~v~Gl~~ea~gp--~~~vG~~c~I~~~g~~~~~~~~EVVGf~~~~v~LmPy~ 78 (455)
T TIGR01026 1 MERNLTTLYNRLAQEADLEAVKRVGRVTKVKGLLIEAVGP--QASVGDLCLIERKGSEGKEVVAEVVGFNGEKVLLMPYE 78 (455)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEEECC--CCCCCCEEEEEEECCCCCEEEEEEEEEECCEEEECCCC
T ss_conf 9610134888887532116302578999985268985247--76677778999737898779999885206756752365
Q ss_pred CCCCCCCCCEEEECC----C-CEEE---CCHHHHHHHHHHHHHHCCCCC--CCCCCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 855746788899728----8-5552---466688654307763047887--77555301211254333000133110011
Q gi|254780684|r 77 IGEEISLGDLVFHWG----R-FRIS---PSACWCGRVINALGKPIDGDD--SLGKGDLSMEIMSKVPPAMNRQRVEKGFK 146 (438)
Q Consensus 77 ~~~gI~~G~~V~~~g----~-~~i~---vG~~lLGRViD~lG~PlDg~~--~l~~~~~~~~i~~~~p~p~~R~~i~e~L~ 146 (438)
...|+.+|++|..++ . ++++ +|++|||||+|+||+|||+++ .+...+..+++..+||||++|.+|++.|.
T Consensus 79 ~~~G~~~G~~V~~~~isae~~L~~~qlP~G~~LLGRVld~~G~PiD~~~~~~~~~~~~~~~l~~~~~nPl~R~~i~~~~~ 158 (455)
T TIGR01026 79 EVEGVEPGSKVLAKNISAEEGLSIKQLPVGDGLLGRVLDGLGKPIDGKGKGFLDNVETEPALITAPINPLKREPIREILS 158 (455)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEE
T ss_conf 44433534523320433002545574336876402448546871137777666543012552468988667630002100
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECC
Q ss_conf 1245875200223585037526678899999999874-0789838993124652238899998642-7755328984157
Q gi|254780684|r 147 TGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR-SDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATS 224 (438)
Q Consensus 147 TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~-~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~ 224 (438)
||||+||+|+|+|||||+||||||||||||||+|||| +++|||+|+||||||||||+||||+.++ +||+|||||||||
T Consensus 159 tGVR~iD~LLTvGkGQR~GIFAGSGVGKStLlGMIARn~~~ADv~ViALIGERGREV~EFIE~~LG~EGLkrSV~VVaTS 238 (455)
T TIGR01026 159 TGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNNTEADVNVIALIGERGREVKEFIEKDLGEEGLKRSVVVVATS 238 (455)
T ss_pred CCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 36453101035556650135503760034456676300678982799864377774157886313656660117998368
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCC
Q ss_conf 78803444444567778888642679889997098999999876654047784323663245542004444431136788
Q gi|254780684|r 225 DESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEK 304 (438)
Q Consensus 225 d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~ 304 (438)
|+||++|+++||+||+||||||||||||||+|||+||||+|+|||+|++||||+++|||||||+.||+|+||||+..+++
T Consensus 239 D~SPl~R~~GAy~At~iAEYFrdqGk~VlLlmDSvTRfA~AqREiGLA~GEPP~~kGYtPSVF~~LP~LlERaG~G~~~~ 318 (455)
T TIGR01026 239 DQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSLLPRLLERAGKGASGK 318 (455)
T ss_pred CCCHHHHHHHHHEEHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 86388887326400254354652187056202027899889889987437777777778548899899997606873577
Q ss_pred C-CEEEEEEEEECCCCC-CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 5-235543334216764-20278999861260898704277589713114456400022120899999999999999999
Q gi|254780684|r 305 G-NITAVISVLVDGDNH-NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHR 382 (438)
Q Consensus 305 G-SiT~~~~v~~~~dd~-~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~ 382 (438)
| ||||||||||+|||+ +|||+|++|+|+||||||||+||++||||||||+.|+||+|+++.+++|++.++++|++||.
T Consensus 319 GGSITAFYTVLVeGDD~s~ePiAD~~r~ILDGHIVLSR~LA~~g~YPAIdvl~S~SR~~~~i~s~~~~~~~~~fR~lLs~ 398 (455)
T TIGR01026 319 GGSITAFYTVLVEGDDLSNEPIADSVRGILDGHIVLSRALADRGHYPAIDVLASISRLMTAIVSEEHKKAARKFRELLSK 398 (455)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCEEECHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 95798888886415678877724310225515355245886178978637555688988740748899999999999998
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 9999999985234469998999999999999998359988899976899999
Q gi|254780684|r 383 FEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEIT 434 (438)
Q Consensus 383 y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~~~~~~~ 434 (438)
|+++|||||+|.|+.|+|+++|+||++++++++||+|+.+|..+||...+.+
T Consensus 399 y~~~EdLiriG~Y~~GSd~e~D~AI~~~~~le~FL~Qg~~E~~~fE~s~~~L 450 (455)
T TIGR01026 399 YKENEDLIRIGAYKKGSDKELDKAIAKYPKLERFLKQGINEKVNFEESLQQL 450 (455)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 8761323122025587886689998579998887547943463089999999
No 4
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=1021.39 Aligned_cols=428 Identities=45% Similarity=0.693 Sum_probs=399.5
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-C-CCEEEEEEEECCCEEEEEECCCC
Q ss_conf 23699999999741-334212012899995258999826888873518999569-9-60799999741997999980485
Q gi|254780684|r 2 QKNLETLAQLAEDY-SKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-N-SDNLGQVIRINLDIVYICPVGIG 78 (438)
Q Consensus 2 ~~~l~~l~~~~~~~-~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~-~~v~geVi~~~~~~~~l~~~~~~ 78 (438)
..++.++....... ....+..+|+|++|.|.++++.|+ .+++||+|.|+.. + ...++|||+|+++.+++|||++.
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~G~v~~v~G~~lea~g~--~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~ 80 (441)
T COG1157 3 SRDLTHLDSLELALRNTDPYKRRGRLTRVTGLLLEAVGP--QARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPV 80 (441)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEECC--CCCCCCEEEEEECCCCCCEEEEEEEECCCEEEEECCCCC
T ss_conf 414567654243102477616987899985249998448--876235699996588874147999972876899626765
Q ss_pred CCCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 57467888997288-55524666886543077630478877755530121125433300013311001112458752002
Q gi|254780684|r 79 EEISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTP 157 (438)
Q Consensus 79 ~gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~p 157 (438)
.|+.+|++|.++++ +++++|++|||||+|++|+||||++.+. ...++|+..+||||+.|++|+++|+||||+||+|+|
T Consensus 81 ~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~-~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT 159 (441)
T COG1157 81 EGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPD-GTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLT 159 (441)
T ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCC
T ss_conf 5677887897459754236686665410066888577899998-763231457997821026546645456144401002
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 235850375266788999999998740789838993124652238899998642-7755328984157788034444445
Q gi|254780684|r 158 LCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPL 236 (438)
Q Consensus 158 ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~ 236 (438)
||+|||+||||+|||||||||+||+|++++|++|+||||||||||+||+|+.++ +||+|||+|+||||+||++|+++++
T Consensus 160 ~G~GQRiGIFAgsGVGKStLLgMiar~t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~ 239 (441)
T COG1157 160 CGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAF 239 (441)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHCCHHHCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 24674678871699868999999962466987999976066405999999860233035269999789889899988899
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEEC
Q ss_conf 67778888642679889997098999999876654047784323663245542004444431136788523554333421
Q gi|254780684|r 237 TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD 316 (438)
Q Consensus 237 ~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~ 316 (438)
+|++|||||||||+||||+|||+||||+|+|||+|++||||+++|||||||+.+|+|+||||+. .+||||+|||||++
T Consensus 240 ~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~--~~GsITafYTVLve 317 (441)
T COG1157 240 TATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG--DKGSITAFYTVLVE 317 (441)
T ss_pred HHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CCCCEEEEEEEEEE
T ss_conf 9999999998679859999613889999998888752899866898955988748988604899--99817899999850
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 67642027899986126089870427758971311445640002212089999999999999999999999999852344
Q gi|254780684|r 317 GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYR 396 (438)
Q Consensus 317 ~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~ 396 (438)
|||++|||+|++|||+||||||||+||++|||||||++.|+||+|+++++++|++.+.++|++|+.|+|+|||+++|+|+
T Consensus 318 GDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~ 397 (441)
T COG1157 318 GDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQ 397 (441)
T ss_pred CCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 68888850456664226528973868855999974467778777664089999999999999999988778999863856
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 69998999999999999998359988899976899999870
Q gi|254780684|r 397 PGVDLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKL 437 (438)
Q Consensus 397 ~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~~~~~~~~~l 437 (438)
.|+|+++|+||++++.|++||+|+.+|+++++ +++++|
T Consensus 398 ~G~D~~~D~Ai~~~p~i~~fL~Q~~~e~~~~~---~t~~~L 435 (441)
T COG1157 398 KGSDPELDKAIKLYPKIEQFLKQGIDEKSSFE---ETLEQL 435 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHH
T ss_conf 78987889999750999999718954457999---999999
No 5
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=1009.01 Aligned_cols=437 Identities=57% Similarity=0.951 Sum_probs=424.5
Q ss_pred CHHHHHHHHHHHHHCCCC--EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCC
Q ss_conf 236999999997413342--120128999952589998268888735189995699607999997419979999804855
Q gi|254780684|r 2 QKNLETLAQLAEDYSKNL--VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGE 79 (438)
Q Consensus 2 ~~~l~~l~~~~~~~~~~l--~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~ 79 (438)
+++++++..+.+.|+... ++.+|+|++|.|++++++|+++.+++||+|.|+++++.++|||++|+++.+.+|||+++.
T Consensus 4 ~~~~~~l~~~~~~~~a~~p~~r~~G~V~~V~g~i~~v~GL~~~~~~Ge~~~i~~~~~~~~aeVv~~~~~~v~l~p~g~~~ 83 (450)
T PRK06002 4 DNALARLAAFVQQYAAPEPLVRIGGTVSEVTPSHYRVRGLSRFVRLGDRVAIRSDGGTQLGEVVRVDEDGVLVKPFEPRI 83 (450)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEECCCCC
T ss_conf 47999999999850799982345689999938189999886667779889992799717999998637818999876866
Q ss_pred CCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 74678889972885552466688654307763047887775553012112543330001331100111245875200223
Q gi|254780684|r 80 EISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC 159 (438)
Q Consensus 80 gI~~G~~V~~~g~~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig 159 (438)
||++|++|.++|++.++||++|||||+|++|+||||+||+...+.++|+++.||||++|+++++||+||||+||+|+|||
T Consensus 84 gi~~G~~V~~tg~l~v~vg~~lLGRVvD~lG~PlDgkgpl~~~~~~~pi~~~~p~~~~R~~i~epL~TGIkaID~l~pig 163 (450)
T PRK06002 84 PAGLGAAVFRKGPLRIRPDPSWKGRVINALGEPIDGKGPLAPGTRPMSIDATAPPAMRRARVDTPLRTGVRVIDIFTPLC 163 (450)
T ss_pred CCCCCCEEEECCCEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 68899989847980444680004787378886578999988776135156899681212788876631031334214601
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 58503752667889999999987407898389931246522388999986427755328984157788034444445677
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAV 239 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~ 239 (438)
||||+||||++|+|||+|++||++++++|+|||++||||+||++||+++.++++|+|||+|++|+|+||.+|+++||+||
T Consensus 164 rGQR~gIfgg~GvGKTtLl~~i~~~~~~d~vV~~lIGeRgrEv~ef~e~~l~~~l~~svvV~atsd~~p~~r~~a~~~a~ 243 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAFDTVVVALVGERGREVREFLEDTLADHLSKAVAVVATGDESPMMRRLAPKTAT 243 (450)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48777742689998759999998625898799998647489999999987642200059997058898288765565544
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCC
Q ss_conf 78888642679889997098999999876654047784323663245542004444431136788523554333421676
Q gi|254780684|r 240 TIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDN 319 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd 319 (438)
|+||||||||+|||++|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+..+++||||+||||++++||
T Consensus 244 aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~r~gYp~~vf~~l~~LlERag~~~~~~GSITal~~V~~~~dD 323 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDD 323 (450)
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCC
T ss_conf 37999996799679998261788889999998758999756778327766068887622577787306888888713887
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 42027899986126089870427758971311445640002212089999999999999999999999999852344699
Q gi|254780684|r 320 HNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV 399 (438)
Q Consensus 320 ~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~ 399 (438)
++|||+|+++|||||||||||+||++|||||||++.|+||+|+++++++|++++.++|++|++|+|+|||++||+|..|+
T Consensus 324 ~~~pI~d~~~silDGhIvLsr~la~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~~r~~la~y~e~~dli~~g~y~~g~ 403 (450)
T PRK06002 324 HNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLAKHVWTPEQRKLVRRLKSMIARFEETRDLRLMGGYQPGA 403 (450)
T ss_pred CCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 67757887867735499984889867999972887342017712242999999999999999777789999975946799
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 989999999999999983599888999768999998709
Q gi|254780684|r 400 DLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKLQ 438 (438)
Q Consensus 400 d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~~~~~~~~~l~ 438 (438)
||++|++|+++++|++||+|+.+|+.|++.|.++++.|+
T Consensus 404 d~~~d~ai~~~~~i~~fL~Q~~~ep~s~d~~~~l~~~~~ 442 (450)
T PRK06002 404 DPELDQAVDLVPRIYEALQQSPGDPPSDDPFADLAAALK 442 (450)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999998269999983899899987789999999853
No 6
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=998.19 Aligned_cols=421 Identities=36% Similarity=0.587 Sum_probs=401.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99999999741334212012899995258999826888873518999569960799999741997999980485574678
Q gi|254780684|r 5 LETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 5 l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
+++++++.+...+.-...+|+|++|.|.+++++|+. +++|++|.|+..++.+.||||+|+++++.+|||+++.||++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~sGrv~~v~G~~ie~~g~~--~~iG~~c~i~~~~g~~~aEVvgf~~~~~~l~p~~~~~Gi~~G 83 (440)
T PRK08972 6 LNRLKQYQQKVPPFRAVASGQLVRVVGLTLEATGCR--APVGSLCSIETMAGELEAEVVGFDGDLLYLMPIEELRGVLPG 83 (440)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEECC--CCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 999999975267789866048999982589998168--987887899849982899999982997999988888888999
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
++|.++|+ +++|||++|||||+|++|+||||+|++... .++|++++||||++|++|++||+||||+||+|+|||||||
T Consensus 84 ~~V~~tg~~~~VpVG~~lLGRVvD~lG~PiDg~g~~~~~-~~~~i~~~~~~pl~R~~i~epl~TGIkaID~l~pigrGQR 162 (440)
T PRK08972 84 ARVTPLGEQSGLPVGMSLLGRVLDGNGNPLDGLGPIYTD-QRAPRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQR 162 (440)
T ss_pred CEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCE
T ss_conf 999978998678848131188757886635899999998-5213137997821037778610158345634367124646
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 375266788999999998740789838993124652238899998642-7755328984157788034444445677788
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
+|||||+|+|||+|++||++++++|++||++||||+||++||++++++ ++|+|||||++|||+||++|+++||+|+|||
T Consensus 163 igIf~gsGvGKS~Ll~~i~r~~~advvVi~lIGERgrEv~efie~~l~~~~~~rsvvV~atsd~~p~~R~~a~~~A~tiA 242 (440)
T PRK08972 163 MGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATRIA 242 (440)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCEEEEEEECEEHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 66315789758999988875147878999862313699999999985047744789997048888688999999999889
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 88642679889997098999999876654047784323663245542004444431136788523554333421676420
Q gi|254780684|r 243 EYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHND 322 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~ 322 (438)
|||||+|+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+..+++||||+||||++|+||++|
T Consensus 243 EyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~~~GSITa~~tVlv~gdD~~d 322 (440)
T PRK08972 243 EYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDLQD 322 (440)
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCC
T ss_conf 99996799779996355677788878998748998766776427777368887522689997658885666315886678
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 27899986126089870427758971311445640002212089999999999999999999999999852344699989
Q gi|254780684|r 323 PIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLI 402 (438)
Q Consensus 323 pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~ 402 (438)
||+|+++|||||||+|||+||++||||||||+.|+||+|+++++++|++++.++|.+|+.|+|+|||+++|+|++|+||+
T Consensus 323 Pi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRvm~~i~~~~h~~~a~~~r~~la~y~e~~dli~~g~y~~g~d~~ 402 (440)
T PRK08972 323 PIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYAQGSDPR 402 (440)
T ss_pred CCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 72454465535079984879866999875875066552741068999999999999999888899999975966899989
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99999999999998359988899976
Q gi|254780684|r 403 LDKAVHQVPIIYDFLKQSPSDLSSED 428 (438)
Q Consensus 403 ~d~~i~~~~~i~~fl~Q~~~e~~~~~ 428 (438)
+|++|+++++|++||+|+.+|+++++
T Consensus 403 ~D~ai~~~~~i~~fL~Q~~~e~~~~~ 428 (440)
T PRK08972 403 IDNAIRLQPAMNAFLQQTMKEAVPYD 428 (440)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 99999868999998389999997999
No 7
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=1000.03 Aligned_cols=432 Identities=37% Similarity=0.597 Sum_probs=403.5
Q ss_pred CCHHHHHHHHHHH----HHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCC----CEEEEEEEECCCEEE
Q ss_conf 9236999999997----413342-1201289999525899982688887351899956996----079999974199799
Q gi|254780684|r 1 MQKNLETLAQLAE----DYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNS----DNLGQVIRINLDIVY 71 (438)
Q Consensus 1 m~~~l~~l~~~~~----~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~----~v~geVi~~~~~~~~ 71 (438)
|+-+.+++.+.++ ..+... ....|+|++|.|.+++++|+. +++|++|.|...++ .+.||||+|+++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~p~~~GrV~~v~G~~ie~~G~~--~~iG~~c~i~~~~~~~~~~v~aEVVgf~~~~v~ 78 (451)
T PRK05688 1 MRLERTSFAKRLEGYAEAISLPAQPVVEGRLLRMVGLTLEAEGLR--AAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVY 78 (451)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECEEEEEEECC--CCCCCEEEEEECCCCCCCEEEEEEEEECCCEEE
T ss_conf 987789999999999972577677700369999967499998258--874784799868988775468999225499799
Q ss_pred EEECCCCCCCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998048557467888997288-5552466688654307763047887775553012112543330001331100111245
Q gi|254780684|r 72 ICPVGIGEEISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIR 150 (438)
Q Consensus 72 l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr 150 (438)
+|||+++.||.+|++|.++++ .++|||++|||||+|++|+|||++|++.. +.++|+++++|||++|++|+|||+||||
T Consensus 79 l~p~g~~~Gi~~G~~V~~~g~~~~VpVG~~lLGRVvd~lG~PlDg~g~i~~-~~~~p~~~~~p~pl~R~~i~epl~TGIr 157 (451)
T PRK05688 79 LMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGGMKA-EDWVPMDGPTINPLNRDPISEPLDVGIR 157 (451)
T ss_pred EEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCC-CCEEECCCCCCCHHHCCCCCCCEECCCE
T ss_conf 998878778899999996899877775825358888877642689999898-7345566899883551787862003846
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHH
Q ss_conf 8752002235850375266788999999998740789838993124652238899998642-775532898415778803
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPI 229 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~ 229 (438)
+||+|+|||||||+|||||+|+|||+|++||++++++|+|||++||||+||++||++++++ ++|+|||+|++|||+||+
T Consensus 158 aID~l~pigrGQR~gIfggsGvGKS~Ll~~i~r~~~adv~Vi~lIGERgrEv~efi~~~l~~~~~~~svvV~atsd~~p~ 237 (451)
T PRK05688 158 SINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPL 237 (451)
T ss_pred EEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 88454672467564210488986899999998852798699996127759999999998515674305898338889879
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEE
Q ss_conf 44444456777888864267988999709899999987665404778432366324554200444443113678852355
Q gi|254780684|r 230 LRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITA 309 (438)
Q Consensus 230 ~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~ 309 (438)
+|+++||+|+||||||||||+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+...++||||+
T Consensus 238 ~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf~~l~~LlERag~~~~g~GSITa 317 (451)
T PRK05688 238 MRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITA 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999987655899998679825999705577788888899875899876687844887737888641379999922016
Q ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43334216764202789998612608987042775897131144564000221208999999999999999999999999
Q gi|254780684|r 310 VISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDI 389 (438)
Q Consensus 310 ~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l 389 (438)
||||++++||++|||+|+++|||||||||||+||++|||||||++.|+||+|+++++++|++++.++|++|++|+|+|||
T Consensus 318 l~tVlv~gdD~~dPi~d~~~silDGhIvLsr~la~~G~yPAIDvl~SvSRvm~~i~~~~h~~~a~~~r~~la~Y~e~~dL 397 (451)
T PRK05688 318 FYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDL 397 (451)
T ss_pred EEEEECCCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46775038876777334456550625998487886699998287526654233331299999999999999986888999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHH
Q ss_conf 985234469998999999999999998359988899976-8999998
Q gi|254780684|r 390 RLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITK 435 (438)
Q Consensus 390 ~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~ 435 (438)
+++|+|.+|+||++|++|+++++|++||+|+.+|+.+++ +++++..
T Consensus 398 i~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~ 444 (451)
T PRK05688 398 ISVGAYVAGGDPETDLAIARQPHLVQFLRQGLRENVSLAESREQLAA 444 (451)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99858456999999999986999999818999999599999999999
No 8
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=994.43 Aligned_cols=429 Identities=41% Similarity=0.673 Sum_probs=404.6
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 9999999741334212012899995258999826888873518999569-960799999741997999980485574678
Q gi|254780684|r 6 ETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 6 ~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
+.+...+.. .+.++.+|+|++|.|++++++|+...+++|++|.++.. +..+.|||++|+++++.+|||+++.||++|
T Consensus 3 ~~~~~~~~~--~~~~~~~GrV~~V~G~~vev~g~~~~~~iG~~c~I~~~~g~~i~aEVvgf~~~~~~l~~~~~t~Gi~~G 80 (441)
T PRK08927 3 KALAAQIGD--IDGVNIYGRVVGVRGLLVEVAGPIHAMSVGARIVVETGDGREIPCEVIGFRGDRALLMPFGPLEGVRRG 80 (441)
T ss_pred HHHHHHHHC--CCCEEEEEEEEEEECEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 899999844--897157789999977089998057777758889999089988999999885987999988887788999
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
++|.++++ +++|||++|||||+|++|+||||++++...+.++|++++||||++|++++++|+||||+||+|+|||||||
T Consensus 81 ~~V~~tg~~~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQR 160 (441)
T PRK08927 81 CRAVIANAAAQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGPPLDLGVRALNTFLTCCRGQR 160 (441)
T ss_pred CEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 99998999987777866428787767111589998888760040247896846617777631036015653300203646
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 375266788999999998740789838993124652238899998642-7755328984157788034444445677788
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
+|||||+|+|||+|++||+|++++|+|||++||||+||++||++++++ ++++|||+|++|||+||++|+++||+|+|||
T Consensus 161 igIfagsGvGKs~Ll~~i~r~~~adv~VialIGeRgrEv~efi~~~l~~~~l~rsvvV~atsd~p~~~R~~a~~~A~aiA 240 (441)
T PRK08927 161 LGIFAGSGVGKSVLLSMLARNTDADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIA 240 (441)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 66316899987899999986416773787522651899999999872024522458999637898788799998755899
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 88642679889997098999999876654047784323663245542004444431136788523554333421676420
Q gi|254780684|r 243 EYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHND 322 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~ 322 (438)
||||||||||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+.. ++||||+||||++|+||++|
T Consensus 241 Eyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~~-~~GSIT~~~tVl~~gdD~~d 319 (441)
T PRK08927 241 EYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGL-GEGTITGLFTVLVDGDDHNE 319 (441)
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEECEEEEEECCCCCCC
T ss_conf 99997799679983460288899999997558999877878617877178887613578-99503030357612787678
Q ss_pred HHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 27899986126089870427758971311445640002212089999999999999999999999999852344699989
Q gi|254780684|r 323 PIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLI 402 (438)
Q Consensus 323 pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~ 402 (438)
||+|+++|||||||||||+||++|||||||++.|+||+|+++++++|++++.++|++|++|+|+|||+++|+|+.|+||+
T Consensus 320 Pi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y~e~edli~~G~y~~g~d~~ 399 (441)
T PRK08927 320 PVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPAELPLVRRARQLMATYADMEELIRLGAYRAGSDPE 399 (441)
T ss_pred CCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 72454465636479996879866999980876256442400027999999999999999888999999973864799989
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 99999999999998359988899976-899999870
Q gi|254780684|r 403 LDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 403 ~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
+|++|+++++|++||+|+.+|..+++ ++.++...+
T Consensus 400 ~D~ai~~~~~i~~fL~Q~~~e~~~~~e~~~~L~~~~ 435 (441)
T PRK08927 400 VDEAIRLHPPLEAFLRQGKDEATSLAEGYAQLAQIL 435 (441)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999998679999984899889989999999999986
No 9
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=993.86 Aligned_cols=427 Identities=38% Similarity=0.597 Sum_probs=400.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCC--CEEEEEEEECCCEEEEEECCCCCCC
Q ss_conf 69999999974133421201289999525899982688887351899956996--0799999741997999980485574
Q gi|254780684|r 4 NLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNS--DNLGQVIRINLDIVYICPVGIGEEI 81 (438)
Q Consensus 4 ~l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~--~v~geVi~~~~~~~~l~~~~~~~gI 81 (438)
-.+++++.++... +++.+|+|++|.|.+++++|+ .+++||+|.++..++ .+.||||+|+++.+.+|||+++.||
T Consensus 7 ~~~~l~~~~~~~~--~~~~~Grv~~v~G~~iea~~~--~~~iG~~c~i~~~~~~~~~~aEVVgf~~~~~~l~p~~~~~Gi 82 (439)
T PRK06936 7 IPHHLRHAIVGSR--LIQIRGRVTQVTGTILKAVVP--GVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGI 82 (439)
T ss_pred HHHHHHHHHHCCC--EEEEEEEEEEEEEEEEEEEEC--CCCCCCEEEEECCCCCCEEEEEEEEEECCEEEEEECCCCCCC
T ss_conf 8999999982698--577887999999658999847--999788689982899834899999883898999967786678
Q ss_pred CCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 67888997288-55524666886543077630478877755530121125433300013311001112458752002235
Q gi|254780684|r 82 SLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCH 160 (438)
Q Consensus 82 ~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~ 160 (438)
++|++|.++|+ +++|+|++|||||+|++|+|||+++++.. +.++|++++||||++|++|++||+||||+||+|+|||+
T Consensus 83 ~~G~~V~~~g~~~~vpvG~~lLGRV~D~~G~PlDg~~~~~~-~~~~pi~~~~p~p~~R~~i~epl~TGIraID~llt~g~ 161 (439)
T PRK06936 83 SSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEP-AAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGE 161 (439)
T ss_pred CCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCC-CCEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHC
T ss_conf 99999997899867775704228888888875589999987-87620458897842026878742268555524686310
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 850375266788999999998740789838993124652238899998642-7755328984157788034444445677
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAV 239 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~ 239 (438)
|||+|||||+|+|||+|++||++++++|+|||++||||+||++||++++++ ++|+|||+|++|||+||++|+++||+|+
T Consensus 162 GQR~gIfagsGvGKs~Ll~~i~r~~~adv~V~alIGERgrEv~efie~~l~~~gl~rsvvV~atsd~p~~~R~~aa~~a~ 241 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVAT 241 (439)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 57010236999988999999976432695799980730899999999864125431069996189899899999998877
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCC
Q ss_conf 78888642679889997098999999876654047784323663245542004444431136788523554333421676
Q gi|254780684|r 240 TIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDN 319 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd 319 (438)
||||||||||+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+ ..+||||+||||++||||
T Consensus 242 aiAEyFrd~G~~VLl~~DslTR~A~A~REI~l~~gepP~~~GYppsvf~~l~~l~ERag~--~~~GSITa~~tVl~~gdD 319 (439)
T PRK06936 242 SIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQ--SDKGSITALYTVLVEGDD 319 (439)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCEEEEEEEEECCCC
T ss_conf 889999858984899935678999999899986689998767795099887888872558--999745765445504887
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 42027899986126089870427758971311445640002212089999999999999999999999999852344699
Q gi|254780684|r 320 HNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV 399 (438)
Q Consensus 320 ~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~ 399 (438)
++|||+|+++|||||||+|||+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+|||+++|+|+.|+
T Consensus 320 ~~dPi~d~~~silDGhivLsR~la~~g~yPAIDvl~S~SRvm~~v~~~~h~~~a~~~r~~la~y~e~edli~iG~y~~G~ 399 (439)
T PRK06936 320 MTEPVADETRSILDGHIILSRKLAAANHYPAIDVLASASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQ 399 (439)
T ss_pred CCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77771565666626069984878866999981874045444521226999999999999999899999999854865799
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 98999999999999998359988899976-899999870
Q gi|254780684|r 400 DLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 400 d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
||++|++++++++|++||+|+.+|..+++ +++++...+
T Consensus 400 d~~~D~ai~~~~~i~~FL~Q~~~e~~~~~et~~~L~~l~ 438 (439)
T PRK06936 400 DKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETLT 438 (439)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 988999998689999980899999849999999999974
No 10
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=988.77 Aligned_cols=432 Identities=37% Similarity=0.615 Sum_probs=404.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCC
Q ss_conf 923699999999741334212012899995258999826888873518999569-9607999997419979999804855
Q gi|254780684|r 1 MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGE 79 (438)
Q Consensus 1 m~~~l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~ 79 (438)
|...++.+.+.+..... ...+|+|++|.|.++++.|+ .+++||+|.|+.. +..+.||||+|+++++.+|||+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~~GrV~~v~G~~ie~~g~--~~~iGelc~I~~~~~~~~~aEVVgf~~~~~~l~p~~~~~ 79 (442)
T PRK06315 4 LTTDFDTLMSQLPDVQL--TTVVGRITEVVGMLIKAVVP--DVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELT 79 (442)
T ss_pred HHHHHHHHHHHHCCCCC--CEEEEEEEEEEEEEEEEEEC--CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCC
T ss_conf 56649999998613886--21357999999789999867--898678689991899778899999849979999877876
Q ss_pred CCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7467888997288-55524666886543077630478--87775553012112543330001331100111245875200
Q gi|254780684|r 80 EISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDG--DDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFT 156 (438)
Q Consensus 80 gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg--~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~ 156 (438)
||.+|++|.++|+ ++++||++|||||+|++|+|||+ ++|+...+.++|+++.||||++|++|++||+||||+||+|+
T Consensus 80 Gi~~G~~V~~~g~~~~vpvg~~lLGRViD~~G~PiDg~~~gp~~~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~ll 159 (442)
T PRK06315 80 GVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGML 159 (442)
T ss_pred CCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCCCCEEECCCC
T ss_conf 78999999968998778727151378888887766787778876776311324789693430787875336853001127
Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 223585037526678899999999874078-9838993124652238899998642-77553289841577880344444
Q gi|254780684|r 157 PLCHGQRIGVFAGSGIGKSTLLSMFARSDC-FDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMA 234 (438)
Q Consensus 157 pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~-~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a 234 (438)
|||+|||+||||++|+|||+|++||+++++ +|++||++||||+||+.||++++++ ++|+|||+|++|||+||.+|+++
T Consensus 160 pig~GQR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~lIGeRgrEv~efie~~~~~~~l~rsvvV~atsd~p~~~R~~a 239 (442)
T PRK06315 160 TVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNA 239 (442)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 70237776403899998889999999744038934999955113799999997520145213399961799987887555
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 45677788886426798899970989999998766540477843236632455420044444311367885235543334
Q gi|254780684|r 235 PLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVL 314 (438)
Q Consensus 235 ~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~ 314 (438)
||+|+|+||||||||+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+ .++||||+||||+
T Consensus 240 ~~~A~aiAEyFrd~G~~VLl~~DslTR~A~A~REi~l~~gepP~~~GYppsvf~~l~~l~ERag~--~~~GSITa~~tVl 317 (442)
T PRK06315 240 AYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGA--SDKGTITAFYTVL 317 (442)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCEEEEEEEE
T ss_conf 88777899999868994899943702888899999975589998778683399887888872248--8997456533465
Q ss_pred ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 21676420278999861260898704277589713114456400022120899999999999999999999999998523
Q gi|254780684|r 315 VDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGG 394 (438)
Q Consensus 315 ~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~ 394 (438)
+++||++|||+|+++|||||||||||+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+||||++|+
T Consensus 318 ~~gdD~~dPi~d~~~~ilDGhivLsr~la~~g~yPAIDvl~S~SR~~~~v~~~~h~~~a~~~r~~la~y~e~edli~iG~ 397 (442)
T PRK06315 318 VAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGE 397 (442)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 15887678736777876061699858798669999718750453366110579999999999999998899999999629
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHCC
Q ss_conf 4469998999999999999998359988899976-8999998709
Q gi|254780684|r 395 YRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKLQ 438 (438)
Q Consensus 395 y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l~ 438 (438)
|+.|+|+++|+|++++++|++||+|+.+|+++++ +++++...||
T Consensus 398 y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~i~~ 442 (442)
T PRK06315 398 YRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR 442 (442)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 878999889999997999999828998899699999999999759
No 11
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=988.46 Aligned_cols=408 Identities=42% Similarity=0.697 Sum_probs=393.8
Q ss_pred EEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 2899995258999826888873518999569-96079999974199799998048557467888997288-555246668
Q gi|254780684|r 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
|+|++|.|++++++|+ .+++||+|.|+.. +..+.|||++|+++.+.+|||+++.||++|++|+++++ +++++|++|
T Consensus 1 GrV~~V~G~vIea~g~--~~~IGe~c~I~~~~g~~i~aEVVgf~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~v~vg~~l 78 (411)
T TIGR03496 1 GRLTRVVGLVLEAVGL--RAPVGSRCEIESADGDPIEAEVVGFSGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSL 78 (411)
T ss_pred CEEEEEEEEEEEEECC--CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHH
T ss_conf 9799998018999737--99978889999389978999999972997999986688788889999978996667638765
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86543077630478877755530121125433300013311001112458752002235850375266788999999998
Q gi|254780684|r 102 CGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 102 LGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
||||+|++|+|||+++++... .+||++++||||++|.+|++||+||||+||+|+|||+|||+||||++|+|||+||+||
T Consensus 79 LGRVid~lG~PlDg~~~~~~~-~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pig~GQR~gIf~g~GvGKs~Ll~~i 157 (411)
T TIGR03496 79 LGRVIDGLGRPLDGKGPLDAG-ERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRIGIFAGSGVGKSVLLGMM 157 (411)
T ss_pred CCCEECCCCCCCCCCCCCCCC-CEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 378857888765777888878-4565007996814317877621158346634466146863132279998677999999
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 740789838993124652238899998642-7755328984157788034444445677788886426798899970989
Q gi|254780684|r 182 ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 182 ~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
++++++|++||++||||+||+.||++++++ ++|+|||+|++|||+||++|+++||+|||+||||||||+||||+|||+|
T Consensus 158 a~~~~adv~VialIGeR~rev~efie~~~~~~~~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dslt 237 (411)
T TIGR03496 158 ARYTEADVVVVGLIGERGREVKEFIEEILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 75348988999532530589999999862225652169999438899899999999999999999966994699974688
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 99999876654047784323663245542004444431136788523554333421676420278999861260898704
Q gi|254780684|r 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 261 r~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r 340 (438)
|||+|+||||+++||||+++|||||+|+.||+|+||||+..+++||||+||||++++||++|||+|+++|||||||+|||
T Consensus 238 r~A~A~REisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~~V~~~~dD~~dpi~d~~~~ilDG~ivLsr 317 (411)
T TIGR03496 238 RFAMAQREIALAIGEPPATKGYPPSVFAKLPRLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSR 317 (411)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHEEEEEEECH
T ss_conf 99999989998737999866788538888778887436899989868773589757987566457765651404899939
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27758971311445640002212089999999999999999999999999852344699989999999999999983599
Q gi|254780684|r 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420 (438)
Q Consensus 341 ~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~ 420 (438)
+||++||||||||+.|+||+|+++++++|+++++++|++|++|+|+|||+++|+|+.|+|+++|+++.++++|++||+|+
T Consensus 318 ~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~~~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~ 397 (411)
T TIGR03496 318 ELAEQGHYPAIDILASISRVMPDVVSPEHLQLARRFKQLLSRYQENRDLISIGAYQPGSDPELDQAIALYPRIEAFLQQG 397 (411)
T ss_pred HHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 89967999971864056442332168999999999999999989999999974723699989999999799999972899
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 88899976899999870
Q gi|254780684|r 421 PSDLSSEDVFQEITKKL 437 (438)
Q Consensus 421 ~~e~~~~~~~~~~~~~l 437 (438)
.+|+.+ |++++..|
T Consensus 398 ~~e~~~---~~~~~~~l 411 (411)
T TIGR03496 398 MRERAS---FEESLEAL 411 (411)
T ss_pred CCCCCC---HHHHHHHC
T ss_conf 999979---99999649
No 12
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=988.13 Aligned_cols=431 Identities=37% Similarity=0.583 Sum_probs=402.6
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCC----CEEEEEEEECCCEEEEEECC
Q ss_conf 23699999999741-33421201289999525899982688887351899956996----07999997419979999804
Q gi|254780684|r 2 QKNLETLAQLAEDY-SKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNS----DNLGQVIRINLDIVYICPVG 76 (438)
Q Consensus 2 ~~~l~~l~~~~~~~-~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~----~v~geVi~~~~~~~~l~~~~ 76 (438)
.+|++.++.+.+.. ....++.+|+|++|.|.+++++|+ .+++|++|.|+..++ .+.||||+|+++.+++|||+
T Consensus 6 ~~~~~~~~~~~~~l~~~~~~~~~GrV~~v~G~~iea~G~--~a~iG~~C~I~~~~g~~~~~v~AEVVGF~~~~~~Lmp~~ 83 (455)
T PRK07960 6 TRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGL--QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLE 83 (455)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECC--CCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEECC
T ss_conf 999999999999983699761466899997359999677--889799899970799877716799998769958996479
Q ss_pred CCCCCCCCCEEEE-------CCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 8557467888997-------288-55524666886543077630478877755530121125433300013311001112
Q gi|254780684|r 77 IGEEISLGDLVFH-------WGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTG 148 (438)
Q Consensus 77 ~~~gI~~G~~V~~-------~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TG 148 (438)
+..||.+|++|+. +++ .++|||++|||||+|++|+||||++++.. +.++|++++||||++|.+|++||+||
T Consensus 84 ~~~Gi~~G~~V~~~~~~~~~~~~~~~vpVg~~lLGRVvd~lG~PlDg~~~~~~-~~~~pi~~~~pnp~~R~~i~epL~TG 162 (455)
T PRK07960 84 EVEGILPGARVYARNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDT-TETGALITPPFNPLQRTPIEHVLDTG 162 (455)
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf 76657999999724676555788887203846306351899982689999998-76153558997822117878723268
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCC
Q ss_conf 458752002235850375266788999999998740789838993124652238899998642-7755328984157788
Q gi|254780684|r 149 IRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDES 227 (438)
Q Consensus 149 Ir~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~ 227 (438)
||+||+|+|||||||+||||++|+|||+|++||++++++|++||++||||+||+.||++++++ ++++|||||++|||+|
T Consensus 163 IraID~llpigrGQRigIfagsGvGKs~Ll~~iar~~~adv~Vi~lIGERgrEv~efi~~~l~~~~~~rsvvv~atsd~~ 242 (455)
T PRK07960 163 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVS 242 (455)
T ss_pred CEEEECCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 44440336714787763248998849999999988608985899720406289999999975147742127998426668
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCE
Q ss_conf 03444444567778888642679889997098999999876654047784323663245542004444431136788523
Q gi|254780684|r 228 PILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNI 307 (438)
Q Consensus 228 ~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSi 307 (438)
|++|+++|++|+||||||||||+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+..+++|||
T Consensus 243 p~~r~~aa~~a~aiAEyFrd~Gk~VLl~~DslTr~A~A~REi~l~~gepP~~~GYppsvf~~l~~L~ERaG~~~~~~GSI 322 (455)
T PRK07960 243 PLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSI 322 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 48888789999999999985587379997364788888888887637998655778306777378998504789998113
Q ss_pred EEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55433342167642027899986126089870427758971311445640002212089999999999999999999999
Q gi|254780684|r 308 TAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETR 387 (438)
Q Consensus 308 T~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~ 387 (438)
|+||||++|+||++|||+|+++|||||||+|||+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+|
T Consensus 323 Ta~~tVl~~gdD~~dPi~d~~~silDGhivLsr~la~~g~yPAIDvl~S~SR~m~~i~~~~h~~~a~~~r~~la~y~~~~ 402 (455)
T PRK07960 323 TAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRTFKQLLSSFQRNR 402 (455)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHEEEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78889963688867871676454212599982899967999970865047550400079999999999999999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHH
Q ss_conf 99985234469998999999999999998359988899976-8999998
Q gi|254780684|r 388 DIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITK 435 (438)
Q Consensus 388 ~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~ 435 (438)
|||++|+|+.|+||++|+||+++++|++||+|+.+|+++++ +++++..
T Consensus 403 dli~iG~Y~~G~d~~~D~ai~~~~~i~~fL~Q~~~e~~~~~~t~~~L~~ 451 (455)
T PRK07960 403 DLVSVGAYAKGSDPMLDKAIALWPQLEAFLQQGIFERADWEDSLQGLEL 451 (455)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9998618658998679999986899999847998898699999999998
No 13
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=0 Score=983.86 Aligned_cols=425 Identities=39% Similarity=0.657 Sum_probs=399.6
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCE--EEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 999999997413342120128999952589998268888735189995699607--999997419979999804855746
Q gi|254780684|r 5 LETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDN--LGQVIRINLDIVYICPVGIGEEIS 82 (438)
Q Consensus 5 l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v--~geVi~~~~~~~~l~~~~~~~gI~ 82 (438)
++.+.+....++ .++++|+|++|.|++++++|+. +.+||+|.|+..++.. +|||++|+++.+++|||+++.||+
T Consensus 9 ~~~~~~~l~~~~--~~~~~G~V~~v~g~~i~~~G~~--a~iGelc~i~~~~g~~~~~aEVvgf~~~~~~l~p~~~~~gi~ 84 (441)
T PRK09099 9 ADAMERELAALA--AVRRTGKVLEVIGTLLRVSGLD--VTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLS 84 (441)
T ss_pred HHHHHHHHHCCC--CCEEEEEEEEEECCEEEEEECC--CCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEECCCCCCCC
T ss_conf 999998750477--5304669999978199998178--887886999848997110258999868989999887866788
Q ss_pred CCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7888997288-555246668865430776304788777555301211254333000133110011124587520022358
Q gi|254780684|r 83 LGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHG 161 (438)
Q Consensus 83 ~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~G 161 (438)
.|++|.++|+ +++|+|++|||||+|++|+||||+|++... .++|+++.||||++|++|++||+||||+||+|+|||||
T Consensus 85 ~G~~V~~tg~~~~VpvG~~lLGRVvD~lG~PlDg~g~i~~~-~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pigrG 163 (441)
T PRK09099 85 RGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGRGPLDCD-TLVPVIAAPPDPMSRRMIEAPLPTGVRIVDGLMTLGEG 163 (441)
T ss_pred CCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 99999978996378747041488856776556899788876-58875167988200257787412785622366780347
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 50375266788999999998740789838993124652238899998642-77553289841577880344444456777
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
||+||||++|+|||+|++||++++++|++||++||||+||++||++++++ ++|+|||+|++|||+||.+|+++||+|||
T Consensus 164 QR~gIf~gsGvGKstLl~~iar~~~~dv~V~~lIGeRgrEv~efi~~~~~~~~l~~svvv~atsd~~~~~R~~a~~~a~a 243 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYAATA 243 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 63300158988789999989875136861688637213899999999762456320179861588998899998775015
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
+||||||||+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+ .++||||+||||++++||+
T Consensus 244 iAEyfrd~Gk~VLl~~DslTr~A~A~REisl~~gepP~~~gYp~~vf~~l~~l~ERag~--~~~GSITai~tVl~~~dd~ 321 (441)
T PRK09099 244 IAEYFRDRGKRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM--GEHGSITALYTVLAEDDSG 321 (441)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEEEEEECCCCCC
T ss_conf 78899866981899707677999999999986579998566772099887898874037--8998553444455068877
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20278999861260898704277589713114456400022120899999999999999999999999998523446999
Q gi|254780684|r 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD 400 (438)
Q Consensus 321 ~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d 400 (438)
+|||+|+++|||||||+|||+||++||||||||+.|+||+|+++++++|+++++++|++|++|+|+|+|+++|+|+.|+|
T Consensus 322 ~~pi~d~~~si~DGhivLsr~la~~g~yPAIdvl~SvSR~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~~G~y~~G~d 401 (441)
T PRK09099 322 SDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRRLLAKHREVETLLQVGEYRAGSD 401 (441)
T ss_pred CCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 78767877767063899858788669998717741554244344159999999999999998999999997368668989
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHH
Q ss_conf 8999999999999998359988899976-89999987
Q gi|254780684|r 401 LILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKK 436 (438)
Q Consensus 401 ~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~ 436 (438)
|++|++++++++|++||+|+.+|+++++ +++++.+.
T Consensus 402 ~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~l 438 (441)
T PRK09099 402 PVADEAIAKIDAIRDFLSQRTDELSDPDATLAALAEL 438 (441)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7899999878999998389988998999999999998
No 14
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=981.49 Aligned_cols=413 Identities=53% Similarity=0.875 Sum_probs=397.5
Q ss_pred EEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 2899995258999826888873518999569-96079999974199799998048557467888997288-555246668
Q gi|254780684|r 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
|+|++|.|++++|+|++..+++||+|.++.. +..++|||++|+++.+.+|+|+++.||++|++|.++++ +++|+|++|
T Consensus 1 GrV~~I~G~viev~g~~~~~~iGe~c~I~~~~g~~~~aEVvg~~~~~v~l~~~~~t~Gi~~G~~V~~tg~~~~v~vg~~l 80 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80 (418)
T ss_pred CEEEEEECCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCHHH
T ss_conf 98999978399998156667768889999199988999999981998999990798898999999968997488817422
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86543077630478877755530121125433300013311001112458752002235850375266788999999998
Q gi|254780684|r 102 CGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 102 LGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
||||+|++|+|||+++++...+.++|++++||||++|.++++||+||||+||+|+|||+|||+||||++|+|||+|++||
T Consensus 81 LGRVid~~G~PlDg~g~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pig~GQRigIfgg~GvGKt~Ll~~i 160 (418)
T TIGR03498 81 LGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRKRVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSML 160 (418)
T ss_pred CCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 05175446763578999877756876516899822106888743157602120155025766411378999888999999
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 740789838993124652238899998642-7755328984157788034444445677788886426798899970989
Q gi|254780684|r 182 ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 182 ~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
+|++++|++||++||||+||++||++++++ ++|+|||+|++|||+||.+|+++||+|||+||||||||+||||+|||+|
T Consensus 161 ~~~~~adv~V~aliGeRgrEv~efi~~~~~~~~l~~tvvv~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~Dslt 240 (418)
T TIGR03498 161 ARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 87507986899883026899999999865315644269999448898788888887877899999867983899955725
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 99999876654047784323663245542004444431136788523554333421676420278999861260898704
Q gi|254780684|r 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 261 r~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r 340 (438)
|||+|+||||+++||||+++|||||+|+.||+|+||||+.++++||||+||||++|+||++|||+|+++|||||||+|||
T Consensus 241 r~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr 320 (418)
T TIGR03498 241 RFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDR 320 (418)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHCCEEEEECH
T ss_conf 88999999998658999867788417777268786513689998569999999633888677617777676263899848
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27758971311445640002212089999999999999999999999999852344699989999999999999983599
Q gi|254780684|r 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420 (438)
Q Consensus 341 ~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~ 420 (438)
+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+|||+++|+|++|+||++|++++++++|++||+|+
T Consensus 321 ~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~~dli~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~ 400 (418)
T TIGR03498 321 AIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIYEFLTQG 400 (418)
T ss_pred HHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 89867999970885266444854356999999999999999889999999974866799988999999799999970899
Q ss_pred CCCCCCHH-HHHHHHHH
Q ss_conf 88899976-89999987
Q gi|254780684|r 421 PSDLSSED-VFQEITKK 436 (438)
Q Consensus 421 ~~e~~~~~-~~~~~~~~ 436 (438)
.+|+.+++ +++++...
T Consensus 401 ~~e~~~~~~~~~~l~~i 417 (418)
T TIGR03498 401 PDEPTSLQDPFADLAAI 417 (418)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 98998999999999976
No 15
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=982.00 Aligned_cols=416 Identities=38% Similarity=0.625 Sum_probs=395.0
Q ss_pred CCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC---CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-
Q ss_conf 34212012899995258999826888873518999569---96079999974199799998048557467888997288-
Q gi|254780684|r 17 KNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK---NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR- 92 (438)
Q Consensus 17 ~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~---~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~- 92 (438)
.+.++.+|+|++|.|.+++++|+ .+.+||+|.|+.. +..++|||++|+++.+.+|||+++.||++|++|+.+++
T Consensus 11 ~~~~~~~GrV~~I~G~lIea~g~--~~~iGelc~I~~~~~~g~~i~aEVVgf~~~~v~l~p~~~~~GI~~G~~V~~~g~~ 88 (435)
T PRK07721 11 LDPYKRYGKVKRVIGLMIESKGP--ESSIGDVCYIHTKGKGGKKIKAEVVGFKDENILLMPYLEAANIAPGSLVEATGEP 88 (435)
T ss_pred CCCCCCCEEEEEEECEEEEEEEC--CCCCCCEEEEEECCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 79752312899998638999957--8884341799964799978999999876988999987688899999999958997
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 55524666886543077630478877755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 93 FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 93 ~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
+++|+|++|||||+|++|+||||++.+. .+.++|++++||||++|.++++||+||||+||+|+|||||||+|||||+|+
T Consensus 89 ~~vpvg~~lLGRV~d~lG~PiDg~~~~~-~~~~~~i~~~~pnp~~R~~i~e~l~TGIraID~l~tigkGQRigIf~gsGv 167 (435)
T PRK07721 89 LRVKVGSGLIGQVVDAFGEPLDGSALPK-GLAPVSTDQSPPNPMKRPPIREKMEVGVRAIDSLLTVGKGQRVGIFAGSGV 167 (435)
T ss_pred CEEECCHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCC
T ss_conf 6677275322451045654358988888-765352558997850147988630378565226476035754100268998
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998740789838993124652238899998642-7755328984157788034444445677788886426798
Q gi|254780684|r 173 GKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDN 251 (438)
Q Consensus 173 GKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~ 251 (438)
|||+|++||+|++++|++||++||||+||++||+++.++ ++++|||+|++|||+||++|+++||+|||+||||||||+|
T Consensus 168 GKs~Ll~~iar~~~adv~V~~liGeR~rEv~efie~~l~~~~l~rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~ 247 (435)
T PRK07721 168 GKSTLMGMIARQTSADLNVIALIGERGREVREFIERDLGEEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDKGQN 247 (435)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78999999988744882589993320289999999752215553239999438899999999999988899999967997
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89997098999999876654047784323663245542004444431136788523554333421676420278999861
Q gi|254780684|r 252 VLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331 (438)
Q Consensus 252 Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i 331 (438)
|||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+ .++||||+||||++|+||++|||+|+++||
T Consensus 248 VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~--~~~GSIT~i~~V~~~gdD~~dPi~d~~~~i 325 (435)
T PRK07721 248 VMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGT--NESGTITAFYTVLVDGDDMNEPIADTVRGI 325 (435)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 899516388999999999985489998667784599887888885137--999745777545047986667716878777
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 26089870427758971311445640002212089999999999999999999999999852344699989999999999
Q gi|254780684|r 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVP 411 (438)
Q Consensus 332 ~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~ 411 (438)
|||||+|||+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+|||+++|+|+.|+||++|+|+++++
T Consensus 326 lDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~~r~~la~y~e~~~li~~g~y~~g~d~~~D~ai~~~~ 405 (435)
T PRK07721 326 LDGHFVLDRALANKGQFPAVNVLKSISRVMSNIATKEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYP 405 (435)
T ss_pred CCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 16179986889866999980886166543222302999999999999999889999999974876799988999998689
Q ss_pred HHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 99998359988899976-899999870
Q gi|254780684|r 412 IIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 412 ~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
+|++||+|+.+|+.+++ +++++++.+
T Consensus 406 ~i~~fL~Q~~~e~~~~~~~~~~l~~l~ 432 (435)
T PRK07721 406 QLISFLKQEVDEKATLEESIQALKQLT 432 (435)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999984899999989999999999986
No 16
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=976.93 Aligned_cols=427 Identities=36% Similarity=0.582 Sum_probs=401.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 699999999741334212012899995258999826888873518999569-9607999997419979999804855746
Q gi|254780684|r 4 NLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEIS 82 (438)
Q Consensus 4 ~l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~ 82 (438)
+|+++.+.++.. .+.+.+|+|++|.|.++++.|+. +++|++|.|+.. +..+.||||+|+++.+.+|||+++.||.
T Consensus 1 ~l~~~~~~~~~~--~~~r~~GrV~~i~G~~ie~~g~~--~~iG~~c~I~~~~g~~v~aEVVgf~~~~~~L~p~~~~~Gi~ 76 (434)
T PRK07196 1 ALDHALKSIENI--HLARVAGRLVRVTGLLLESVGCR--LAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVL 76 (434)
T ss_pred CHHHHHHHHHCC--CCCEEEEEEEEEECCEEEEECCC--CCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCC
T ss_conf 958999997559--86248889999971089998069--89899899980899888999999819969999888877889
Q ss_pred CCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7888997288-555246668865430776304788777555301211254333000133110011124587520022358
Q gi|254780684|r 83 LGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHG 161 (438)
Q Consensus 83 ~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~G 161 (438)
+|++|+++++ .+++||++|||||+|++|+||||++++.. +..+++.++++||++|++|++||+||||+||+|+|||+|
T Consensus 77 ~G~~V~~~g~~~~v~vg~~lLGRVvD~~G~PlDg~g~~~~-~~~~~~~~~~~nPl~R~~i~e~l~TGIraID~l~pigrG 155 (434)
T PRK07196 77 GGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGG-STPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKG 155 (434)
T ss_pred CCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 9999998899876776862247577678862689988888-846556689998301378887212686244155770245
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 50375266788999999998740789838993124652238899998642-77553289841577880344444456777
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
||+||||++|+|||+|++||+|++++|+|||++||||+||+.||+++.++ ++|++||+|++|+|+||.+|++++|+|+|
T Consensus 156 QRigIfggsGvGKs~Ll~~I~r~~~advvVi~lIGeRgrEv~efi~~~~~~~~l~~svvv~atsd~~p~~r~~a~~~a~a 235 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHA 235 (434)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 24210147899789999999897379989997422234999999998742467432699984588987888899988998
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
+||||||||+|||++|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+.. ++||||+||||++++||+
T Consensus 236 iAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~svf~~l~~l~ERaG~~~-~~GSITa~~tv~~~~dD~ 314 (434)
T PRK07196 236 IATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSS-GNGTMTAIYTVLAEGDDQ 314 (434)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEEEEEEECCCCCC
T ss_conf 9999986798569995474688999999997568999867758438888589998521578-862488888886268887
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20278999861260898704277589713114456400022120899999999999999999999999998523446999
Q gi|254780684|r 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD 400 (438)
Q Consensus 321 ~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d 400 (438)
+|||+|+++|||||||+|||+||++|||||||++.|+||+|+++++++|++++.++|++|++|+|+|||+++|+|+.|+|
T Consensus 315 ~dpi~d~~~silDGhivLsr~la~~G~yPaIdvl~S~SR~m~~i~~~~~~~~a~~~r~~la~y~e~e~li~~G~Y~~G~d 394 (434)
T PRK07196 315 QDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGAD 394 (434)
T ss_pred CCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88706665755075499847688669999738862642255101669999999999999999999999998528557999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHH
Q ss_conf 8999999999999998359988899976-89999987
Q gi|254780684|r 401 LILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKK 436 (438)
Q Consensus 401 ~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~ 436 (438)
|++|++|+++++|++||+|+.+|+++++ +++++...
T Consensus 395 ~~~D~ai~~~~~i~~fL~Q~~~e~~~~~~s~~~l~~l 431 (434)
T PRK07196 395 PMADQAVHYYPAITQFLRQEVGHPALFSASVEQLTGM 431 (434)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 8999999858999998289999994999999999987
No 17
>PRK07594 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=974.60 Aligned_cols=412 Identities=39% Similarity=0.614 Sum_probs=390.7
Q ss_pred CCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CE
Q ss_conf 33421201289999525899982688887351899956996079999974199799998048557467888997288-55
Q gi|254780684|r 16 SKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FR 94 (438)
Q Consensus 16 ~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~ 94 (438)
.+.-++++|+|++|.|+++++.|+ .+++||+|.|..++ .+|||++|+++.+.+|||++++||++|++|.++|+ ++
T Consensus 15 ~~~g~~~~G~v~~v~G~~iea~~~--~~~~Gelc~i~~~~--~~aEVvgf~~~~~~l~~~~~~~Gi~~G~~V~~~g~~~~ 90 (433)
T PRK07594 15 PPDGYCRWGRIQDVSATLLNAWLP--GVFMGELCCIKPGE--ELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQ 90 (433)
T ss_pred CCCCCEEEEEEEEEECCEEEEEEC--CCCCCCEEEEEECC--EEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCE
T ss_conf 999855798999996638999868--98868879997589--07999999799799997888777899999996899747
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 52466688654307763047887775553012112543330001331100111245875200223585037526678899
Q gi|254780684|r 95 ISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGK 174 (438)
Q Consensus 95 i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGK 174 (438)
+|||++|||||+|++|+||||++ +.... ++++++.||||++|+++++||+||||+||+|+|||||||+||||++|+||
T Consensus 91 V~vG~~lLGRVvd~lG~PiDg~~-~~~~~-~~~~~~~pp~p~~R~~i~epl~TGIkaID~l~pigrGQR~gIfgg~GvGK 168 (433)
T PRK07594 91 VPVGEALLGRVIDGFGRPLDGRE-LPDVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK 168 (433)
T ss_pred EECCHHHCCCEECCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCCCCCCEEEECCCCCCCH
T ss_conf 87287332787578876358999-88876-35256789494002677861436740001357712478742047899985
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999998740789838993124652238899998642-775532898415778803444444567778888642679889
Q gi|254780684|r 175 STLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVL 253 (438)
Q Consensus 175 t~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vl 253 (438)
|+|++||++++++|+|||++||||+||++||++++++ ++++|||+|++|||+||.+|+++||+|+|+||||||||+|||
T Consensus 169 TtLl~~i~~~~~adv~V~~lIGERgrEv~efie~~~~~~~~~rsvvV~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VL 248 (433)
T PRK07594 169 STLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV 248 (433)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 58999998424798159999410048899999986533662038999955889999999998776678999986696489
Q ss_pred EEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 99709899999987665404778432366324554200444443113678852355433342167642027899986126
Q gi|254780684|r 254 LILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILD 333 (438)
Q Consensus 254 l~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~D 333 (438)
|+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+. .+||||+||||++++||++|||+|+++||||
T Consensus 249 l~~DslTR~A~A~REisl~~gepP~~~gYppsvf~~l~~LlERag~~--~~GSITa~~tVlv~gdD~~dPi~d~~~silD 326 (433)
T PRK07594 249 LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLD 326 (433)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCEEEEEEEECCCCCCCCCHHHHHHHHCC
T ss_conf 97343888999987899864799987888954988878888751379--9975656655653588666862787776614
Q ss_pred CEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 08987042775897131144564000221208999999999999999999999999985234469998999999999999
Q gi|254780684|r 334 GHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPII 413 (438)
Q Consensus 334 G~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i 413 (438)
|||+|||+||++||||||||+.|+||+|+++++++|++++.++|.+|++|+|+|||+++|+|+.|+||++|+||+++++|
T Consensus 327 GhIvLsr~La~~g~yPAIDvl~SvSRv~~~i~~~~h~~~a~~~r~~la~y~e~edli~~GaY~~G~d~~~D~ai~~~~~i 406 (433)
T PRK07594 327 GHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDI 406 (433)
T ss_pred EEEEECHHHHHCCCCCCCCCCCCHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 59998389996799998088605644425546299999999999999999999999983397789998999999714899
Q ss_pred HHHHCCCCCCCCCHH-HHHHHHH
Q ss_conf 998359988899976-8999998
Q gi|254780684|r 414 YDFLKQSPSDLSSED-VFQEITK 435 (438)
Q Consensus 414 ~~fl~Q~~~e~~~~~-~~~~~~~ 435 (438)
++||+|+.+|+++++ +++++..
T Consensus 407 ~~fL~Q~~~e~~~~e~~~~~L~~ 429 (433)
T PRK07594 407 CTFLRQSKDEVCGPELLIEKLHQ 429 (433)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99847998999899999999999
No 18
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=970.72 Aligned_cols=428 Identities=39% Similarity=0.604 Sum_probs=397.9
Q ss_pred HHHHHHHHHHHHHCC--CCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCC
Q ss_conf 369999999974133--421201289999525899982688887351899956996079999974199799998048557
Q gi|254780684|r 3 KNLETLAQLAEDYSK--NLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEE 80 (438)
Q Consensus 3 ~~l~~l~~~~~~~~~--~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~g 80 (438)
+..+++.+....+.. ..++..|+|.+|.|.++++.++ .+.+||+|.|+.. .+.|||++|+++++.+|+|+++.|
T Consensus 8 ~~~~~~~~~~~~~~~p~~~vr~~G~V~~V~g~iv~~~l~--~~~~Gelc~i~~~--g~~aeVv~~~~~~v~l~~~~~~~G 83 (445)
T PRK06820 8 RLTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLP--NVAQGELCRIEPQ--GMLAEVVSIEQEMALLSPFASSDG 83 (445)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEEEEECEEEEEECC--CCCCCCEEEEECC--CEEEEEEEEECCEEEEEECCCCCC
T ss_conf 899999987416799999846676999992769999658--8784898999279--989999998789799998878878
Q ss_pred CCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 467888997288-5552466688654307763047887775553012112543330001331100111245875200223
Q gi|254780684|r 81 ISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC 159 (438)
Q Consensus 81 I~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig 159 (438)
|+.|++|.++|+ ++++||++|||||+|++|+||||++++. . .++|++++||||++|+++++||+||||+||+|+|||
T Consensus 84 i~~G~~V~~tG~~l~V~VG~~lLGRVvD~lG~PiDgg~~~~-~-~~~pi~~~~p~p~~R~~i~~pL~TGIraID~l~pig 161 (445)
T PRK06820 84 LRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLT-G-QWRELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCG 161 (445)
T ss_pred CCCCCEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCC-C-CEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCCC
T ss_conf 89999999799960887282402787068875318998877-7-432035899683202687851126854662567744
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 5850375266788999999998740789838993124652238899998642-775532898415778803444444567
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
||||+||||++|+|||+|++||++++++|+|||++||||+||++||++++++ ++++|||+|++|||+||.+|+++||+|
T Consensus 162 rGQR~gIfgg~GvGKT~Ll~~i~~~~~adv~V~~~IGeRgrEv~efie~~~~~~~~~rtvvV~atsd~p~~~R~~a~~~a 241 (445)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTA 241 (445)
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 78742110689998122344565306788799998744128999999986423761106999416768989999998761
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf 77888864267988999709899999987665404778432366324554200444443113678852355433342167
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGD 318 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~d 318 (438)
+|+||||||||+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+. .+||||+||+|++++|
T Consensus 242 ~aiAEyfrd~Gk~VLli~DslTr~A~A~REisl~~gepP~~~gYp~~vf~~l~~L~ERag~~--~~GSITal~~V~~~~d 319 (445)
T PRK06820 242 TTVAEYFRERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS--DRGSITAFYTVLVEGD 319 (445)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCEEEEEEEEECCC
T ss_conf 14889998679848998446578888998999864799976777854998888888730478--8975677888970588
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64202789998612608987042775897131144564000221208999999999999999999999999985234469
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPG 398 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g 398 (438)
|++|||+|+++|||||||||||+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+|+|+++|+|+.|
T Consensus 320 D~tdpi~d~~~silDG~ivLsr~La~~g~yPAIDvl~SvSRv~~~~~~~~h~~~a~~~r~~la~y~e~e~li~~G~y~~g 399 (445)
T PRK06820 320 DMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEIELLVQIGEYQAG 399 (445)
T ss_pred CCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 76777167675651538998487986699998187405645462220299999999999999999999999984787679
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHCC
Q ss_conf 9989999999999999983599888999--768999998709
Q gi|254780684|r 399 VDLILDKAVHQVPIIYDFLKQSPSDLSS--EDVFQEITKKLQ 438 (438)
Q Consensus 399 ~d~~~d~~i~~~~~i~~fl~Q~~~e~~~--~~~~~~~~~~l~ 438 (438)
+|+++|++|+++++|++||+|+.++..+ +.+|++++..|+
T Consensus 400 ~d~~~d~ai~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~l~ 441 (445)
T PRK06820 400 EDLQADEALQRYPAICAFLQQDHSLTRDPDTAHLDTTLEHLA 441 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 998999999878999998589998888877779899999999
No 19
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=967.85 Aligned_cols=427 Identities=39% Similarity=0.627 Sum_probs=399.9
Q ss_pred HHHHHHHH-HHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEE--CCCCCEEEEEEEECCCEEEEEECCCCCCC
Q ss_conf 99999999-7413342120128999952589998268888735189995--69960799999741997999980485574
Q gi|254780684|r 5 LETLAQLA-EDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQ--GKNSDNLGQVIRINLDIVYICPVGIGEEI 81 (438)
Q Consensus 5 l~~l~~~~-~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~--~~~~~v~geVi~~~~~~~~l~~~~~~~gI 81 (438)
++.+.... ++|.- ..++|+|++|.|++++++|+. +.+||+|.|. .++..++|||++|+++.+.+|||+++.|+
T Consensus 3 ~~~~~~~~~~~~~~--s~~yG~V~~V~G~li~v~G~~--~~iGe~~~I~~~~~g~~~~geVvg~~~~~v~l~~~~~~~Gi 78 (435)
T PRK08472 3 LESLKNKLNQHFSL--SPRFGSITKISANIIEARGLK--PSVGDIVKIVEENDGKECLGMVVVIEKEQFGISPFSFIEGF 78 (435)
T ss_pred HHHHHHHHHHCCCC--CCCCCEEEEEECEEEEEEECC--CCCCCEEEEEECCCCCEEEEEEEEEECCEEEEEECCCCCCC
T ss_conf 68999998735676--677868999957399999458--87678799997699967789999885998999983688789
Q ss_pred CCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 67888997288-55524666886543077630478877755530121125433300013311001112458752002235
Q gi|254780684|r 82 SLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCH 160 (438)
Q Consensus 82 ~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~ 160 (438)
+.|+.|.++|+ +++|+|++|||||+|++|+|||++|++... .++|++++||||++|.++++||+||||+||+|+||||
T Consensus 79 ~~G~~V~~tg~~~~vpvg~~lLGRVvD~lG~PlDg~g~i~~~-~~~pi~~~~~~p~~R~~i~epl~TGIraID~l~pigr 157 (435)
T PRK08472 79 KIGDKVFISDEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYT-EYAPIMRAPIAAMKRGLIDEVFSVGVKSIDGLLTCGK 157 (435)
T ss_pred CCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCC
T ss_conf 999999989997378758340278877788645899998876-2301147898804516888741158557743266247
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 85037526678899999999874078983899312465223889999864277553289841577880344444456777
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
|||+||||++|+|||+|++||++++++|++||++||||+||++||+++.+++.|+|||+|++|||+||.+|+++||+|||
T Consensus 158 GQR~gIf~g~GvGKt~Ll~~i~~~~~~dv~V~~lIGeR~rEv~efie~~~~~~l~~tvvvvatsd~p~~~r~~a~~~a~a 237 (435)
T PRK08472 158 GQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLSNTVIVVATSDDSPLMRKYGAFCAMS 237 (435)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEECEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 76651235899983357888877615998899761312278999999874113222599984688998999888889999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
+||||||||+|||++|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+.. ++||||+||||++++||+
T Consensus 238 iAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYp~~vf~~l~~l~ERag~~~-~~GSIT~i~~v~~~gdD~ 316 (435)
T PRK08472 238 VAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE-GKGSITAFFTVLVEGDDM 316 (435)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCEEEEEEEEECCCCC
T ss_conf 9999986798489984362788999999998658999755638357766578888642588-985148887785048876
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20278999861260898704277589713114456400022120899999999999999999999999998523446999
Q gi|254780684|r 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD 400 (438)
Q Consensus 321 ~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d 400 (438)
+|||+|+++|||||||+|||+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+++++++|+|+.|+|
T Consensus 317 ~~pi~d~~~si~DG~ivLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~e~li~ig~y~~g~d 396 (435)
T PRK08472 317 SDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMKDIISPEHNLWARKFKRLYSLLKENEVLIRIGAYQKGSD 396 (435)
T ss_pred CCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77745555454060799978798669999848631454414001369999999999999999898999999648657999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 8999999999999998359988899976-899999870
Q gi|254780684|r 401 LILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 401 ~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
+++|.++.+++++++||+|+.+|+++++ +++.+++.|
T Consensus 397 ~~~d~ai~~~~~i~~fL~Q~~~e~~~~eet~~~l~~il 434 (435)
T PRK08472 397 KELDEAISKKELMEQFLKQNENELFPFEQSFELLEEIL 434 (435)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 89999998479999977999999979999999999973
No 20
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=0 Score=969.41 Aligned_cols=414 Identities=34% Similarity=0.523 Sum_probs=390.6
Q ss_pred CCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCC--CCE--EEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC
Q ss_conf 342120128999952589998268888735189995699--607--9999974199799998048557467888997288
Q gi|254780684|r 17 KNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKN--SDN--LGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR 92 (438)
Q Consensus 17 ~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~--~~v--~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~ 92 (438)
+++++++|+|++|.|++|++++. .+++||+|.|+..+ ... .||||+|+++++++|||+++.||+.|++|.++|+
T Consensus 1 ~~~~~~~g~v~rI~G~lIe~~~p--~~~iGelc~I~~~~~~~~~~~~aEVvgf~~~~~~l~~~~~t~Gi~~g~~V~~tg~ 78 (427)
T PRK08149 1 PRLLQRLAHPQRIQGPIIEAELP--DVAIGELCEIRAGWHSKEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLYPTGR 78 (427)
T ss_pred CCCCCCCCEEEEEEEEEEEEEEC--CCCCCCEEEEEECCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC
T ss_conf 96011067589999569999978--9997887899806898614678889731497799997879888899999997899
Q ss_pred -CEEECCHHHHHHHHHHHHHHCCCCCCCCC--CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf -55524666886543077630478877755--530121125433300013311001112458752002235850375266
Q gi|254780684|r 93 -FRISPSACWCGRVINALGKPIDGDDSLGK--GDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAG 169 (438)
Q Consensus 93 -~~i~vG~~lLGRViD~lG~PlDg~~~l~~--~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~ 169 (438)
+++++|++|||||+|++|+|||+.++... ...++|++++||||++|.++++||+||||+||+|+|||||||+||||+
T Consensus 79 ~~~V~VG~~lLGRV~d~lG~piD~l~~~~~~~~~~~~~i~~~pp~p~~R~~i~e~l~TGIraID~l~pigkGQR~gIf~g 158 (427)
T PRK08149 79 ALSIWVGPALLGAVLDPTGKIVERFAPPTVAPISELRPIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFAS 158 (427)
T ss_pred CCEEECCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEECCCEEECCCCCCCCCCEEECCCC
T ss_conf 51887075120797777888866889877776532030458996825607888500038643104453246754000278
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 788999999998740789838993124652238899998642-7755328984157788034444445677788886426
Q gi|254780684|r 170 SGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSK 248 (438)
Q Consensus 170 ~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~ 248 (438)
+|+|||+|++||++|+++|++||++||||+||+.||++++++ ++|+|||+|++|||+||++|+++||+|+|+|||||||
T Consensus 159 sGvGKs~Ll~~i~~~~~adv~Via~IGeRgrEv~efi~~~~~~~~l~rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~ 238 (427)
T PRK08149 159 AGCGKTMLMNMLIEHTEADVFVIGLIGERGREVTEFVEMLRASHKKEKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQ 238 (427)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99867799998886358998999970233789999999750368520368997158899899999998877899999867
Q ss_pred CCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 79889997098999999876654047784323663245542004444431136788523554333421676420278999
Q gi|254780684|r 249 GDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSV 328 (438)
Q Consensus 249 G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~ 328 (438)
|+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+. ++||||+||||++|+||++|||+|++
T Consensus 239 G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~GYp~svf~~l~~l~ERag~~--~~GSIT~~~tV~~~~dD~tdPi~d~~ 316 (427)
T PRK08149 239 GKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT--SAGSITAFYTVLLESEEEADPIGDEI 316 (427)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CCCCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 9837996175788888998999864799987687852998878987623467--89855467568724888787646655
Q ss_pred HHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 86126089870427758971311445640002212089999999999999999999999999852344699989999999
Q gi|254780684|r 329 RSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVH 408 (438)
Q Consensus 329 ~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~ 408 (438)
+|||||||||||+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+|+|+++|+|+.|+|++.|+++.
T Consensus 317 ~~ilDGhivLsr~la~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~~r~~la~y~e~~~li~iG~y~~g~~~~~d~ai~ 396 (427)
T PRK08149 317 RSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDPKHRELAAAFRKLLTRLEELQLFIDLGEYRPGENADNDRAMD 396 (427)
T ss_pred HHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 55006369996768865999981875155436444425999999999999999999999999847876799988999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99999998359988899976899999870
Q gi|254780684|r 409 QVPIIYDFLKQSPSDLSSEDVFQEITKKL 437 (438)
Q Consensus 409 ~~~~i~~fl~Q~~~e~~~~~~~~~~~~~l 437 (438)
++++|++||+|+.+|..+++ ++++.|
T Consensus 397 ~~~~i~~fL~Q~~~e~~~~~---~t~~~l 422 (427)
T PRK08149 397 KRDSLEAFLKQPVDEKSSFS---DTLERM 422 (427)
T ss_pred HHHHHHHHCCCCCCCCCCHH---HHHHHH
T ss_conf 79999997489998884989---999999
No 21
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=964.37 Aligned_cols=406 Identities=43% Similarity=0.681 Sum_probs=389.5
Q ss_pred EEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 2899995258999826888873518999569-96079999974199799998048557467888997288-555246668
Q gi|254780684|r 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
|+|++|.|.+++++|+ .+.+||+|.|+.. +..++|||++|+++.+.+|||+++.||++|++|.++++ +++|+|++|
T Consensus 1 GrV~~i~G~~iev~g~--~~~iGe~c~I~~~~g~~i~aEVv~~~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~l 78 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP--KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGL 78 (413)
T ss_pred CEEEEEEEEEEEEEEC--CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCCC
T ss_conf 9899998279999807--99856759999489988999999982997999993698788999999989997478868430
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86543077630478877755530121125433300013311001112458752002235850375266788999999998
Q gi|254780684|r 102 CGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 102 LGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
||||+|++|+|||+++++.. ..++|++++||||++|.++++||+||||+||+|+|||||||+||||++|+|||+|++||
T Consensus 79 LGRV~d~~G~PlDg~~~~~~-~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pigrGQRigIfag~GvGKt~Ll~~i 157 (413)
T TIGR03497 79 LGRVLDGLGRPLDGEGPIIG-EEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI 157 (413)
T ss_pred CCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 56887767665589867777-61144446899634406788342038654216576113754421058998776999999
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 740789838993124652238899998642-7755328984157788034444445677788886426798899970989
Q gi|254780684|r 182 ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 182 ~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
++++++|++||++||||+||++||+++.++ ++++|||+|++|||+||++|+++||+|+|+||||||+||||||+|||+|
T Consensus 158 a~~~~adv~Vi~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dslt 237 (413)
T TIGR03497 158 ARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 98743785238886332289999999863125642159998458788799988774632789999867996899973712
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 99999876654047784323663245542004444431136788523554333421676420278999861260898704
Q gi|254780684|r 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 261 r~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r 340 (438)
|||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+||||++|+||++|||+|+++|||||||+|||
T Consensus 238 r~A~A~REisl~~ge~P~~~gyp~~~~s~l~~l~ERag~--~~~GSIT~~~~v~~~~dD~tdPi~d~~~si~DG~ivLsr 315 (413)
T TIGR03497 238 RFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN--SQKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSR 315 (413)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCEEEEECH
T ss_conf 988999999986589998878685499887898886138--999854667789712887677716667575061899868
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27758971311445640002212089999999999999999999999999852344699989999999999999983599
Q gi|254780684|r 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420 (438)
Q Consensus 341 ~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~ 420 (438)
+||++||||||||+.|+||+|+++++++|++++.++|++|++|+|+|||+++|+|+.|+|+++|++++++++|++||+|+
T Consensus 316 ~la~~g~yPaIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~ 395 (413)
T TIGR03497 316 ELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQG 395 (413)
T ss_pred HHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 89866999981864246553431156999999999999999889999999962866799988999999899999973899
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 88899976899999870
Q gi|254780684|r 421 PSDLSSEDVFQEITKKL 437 (438)
Q Consensus 421 ~~e~~~~~~~~~~~~~l 437 (438)
.+|+++++ +++..|
T Consensus 396 ~~e~~~~~---~t~~~l 409 (413)
T TIGR03497 396 IDEKFTFE---ETVQLL 409 (413)
T ss_pred CCCCCCHH---HHHHHH
T ss_conf 99997999---999999
No 22
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=0 Score=957.85 Aligned_cols=410 Identities=35% Similarity=0.520 Sum_probs=390.8
Q ss_pred HHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-
Q ss_conf 4133421201289999525899982688887351899956996079999974199799998048557467888997288-
Q gi|254780684|r 14 DYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR- 92 (438)
Q Consensus 14 ~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~- 92 (438)
..+...+.++|+|++|.|.+++++|+ .+++||+|.+. +..++|||++|+++++.+|||+++.||++|++|+++++
T Consensus 13 ~~~~p~~~~~GrV~~V~g~~i~a~G~--~~~iGe~c~i~--~~~~~aeVvgf~~~~v~l~p~~~~~gi~~G~~V~~~g~~ 88 (432)
T PRK06793 13 FIETPFYTKVGKVHSVQEQFFVAKGP--KAKIGDVCFVG--EHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAED 88 (432)
T ss_pred CCCCCCCEEEEEEEEEECEEEEEEEC--CCCCCCEEEEC--CCCEEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 13688744788999993519999937--98758989986--898189999985893999988787788999999979997
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 55524666886543077630478877755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 93 FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 93 ~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
+++|||++|||||+|++|+|||+++++... .++|+++++|||++|+++++||+||||+||+|+|||||||+||||++|+
T Consensus 89 ~~vpVg~~lLGRViD~lG~PlD~~~~~~~~-~~~~~~~~~~np~~R~~i~e~l~TGIraID~l~pigrGQR~gIfg~sGv 167 (432)
T PRK06793 89 VVIPRGNHLLGKVLSANGEVLNEEAENIPL-QKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGV 167 (432)
T ss_pred CEEECCCCCCCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCC
T ss_conf 578889563287757896615899988877-4344328998830137778740048731000156124626666326898
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998740789838993124652238899998642-7755328984157788034444445677788886426798
Q gi|254780684|r 173 GKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDN 251 (438)
Q Consensus 173 GKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~ 251 (438)
|||+|++||++|+++|++||++||||+||+.||+++.++ ++|+|||+|++|||+||.+|+++||+|||+||||||||+|
T Consensus 168 GKstLl~~i~~~~~adv~Vi~lIGeRgrEv~efi~~~l~~~gl~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~ 247 (432)
T PRK06793 168 GKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNN 247 (432)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 78999999987245786579998886279999999986446752127887258899899998875512378899866996
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89997098999999876654047784323663245542004444431136788523554333421676420278999861
Q gi|254780684|r 252 VLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331 (438)
Q Consensus 252 Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i 331 (438)
||++|||+||||+|+||||+++||||. .|||||+|+.+|+|+||||+.. +||||+||||++++||++|||+|+++||
T Consensus 248 VLli~DslTr~A~A~REisl~~gepP~-~Gy~p~~~s~l~~LlERag~~~--~GSITa~~tVl~~gdD~~~pI~d~~~si 324 (432)
T PRK06793 248 VLLMMDSVTRFADARRSVDIAVKELPI-GGKTLLMESYMKKLLERSGKTQ--KGSITGIYTVLVDGDDLNGPVPDLARGI 324 (432)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCC--CCCEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 899945678888887477885379998-9888645878999997540368--8635788899832886678715767766
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHH
Q ss_conf 260898704277589713114456400022120899999999999999999999999998523446999-8999999999
Q gi|254780684|r 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD-LILDKAVHQV 410 (438)
Q Consensus 332 ~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d-~~~d~~i~~~ 410 (438)
|||||||||+||++|||||||++.|+||+|+++++++|++++.++|++|++|+|+|||+++|+|++|+| +..|++++++
T Consensus 325 lDGhIvLsr~La~~g~yPAIDvl~SvSRv~~~v~~~~h~~~a~~~r~~la~y~e~edli~iG~Y~~g~d~~~~d~a~~~~ 404 (432)
T PRK06793 325 LDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAYIFECKNKV 404 (432)
T ss_pred CCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 25379996758866999972885154226254503999999999999999999999999847976699858899999868
Q ss_pred HHHHHHHCCCCCCCCCHHHHH
Q ss_conf 999998359988899976899
Q gi|254780684|r 411 PIIYDFLKQSPSDLSSEDVFQ 431 (438)
Q Consensus 411 ~~i~~fl~Q~~~e~~~~~~~~ 431 (438)
+.|++||+|+.+|+++++...
T Consensus 405 ~~i~~fL~Q~~~e~~~~~~~~ 425 (432)
T PRK06793 405 EGINTFLKQGRSDSFQFDDIV 425 (432)
T ss_pred HHHHHHHCCCCCCCCCHHHHH
T ss_conf 999998289988997999999
No 23
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=0 Score=945.87 Aligned_cols=425 Identities=32% Similarity=0.514 Sum_probs=401.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 699999999741334212012899995258999826888873518999569-9607999997419979999804855746
Q gi|254780684|r 4 NLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEIS 82 (438)
Q Consensus 4 ~l~~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~ 82 (438)
.+++++.+.+.+++ ++.+|+|++|.|.+++++|+. +.+||+|.|+.. +..++|||++|+++.+.+|||+++.||+
T Consensus 3 ~~~~~~~~~~~~~p--~r~~GrV~~V~G~~ie~~g~~--~~iGelc~I~~~~~~~i~aeVvgf~~~~~~l~p~~~~~Gi~ 78 (434)
T PRK05922 3 HLNEEKLLIHQWQP--YRECGLLSRVSGNLLEAQGLS--ACLGELCQISLPKSPPILAEVIGFHNQTTLLMSLSPIHYVA 78 (434)
T ss_pred CHHHHHHHHHHCCC--CEEEEEEEEEECEEEEEEECC--CCCCCEEEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCC
T ss_conf 16778989872798--544679999966499998068--78798599981899878999998729979999777766789
Q ss_pred CCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7888997288-555246668865430776304788777555301211254333000133110011124587520022358
Q gi|254780684|r 83 LGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHG 161 (438)
Q Consensus 83 ~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~G 161 (438)
.|++|.++++ ++++||++|||||+|++|+|||+++++...+ ++|+++.||||++|++|++||+||||+||+|+|||||
T Consensus 79 ~G~~V~~~g~~~~v~vg~~lLGRVld~~G~PiDg~~~~~~~~-~~~i~~~~p~p~~R~~i~e~L~TGIraID~l~pigrG 157 (434)
T PRK05922 79 LGAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTH-LKPLFSPPPSPMSRQPIQEIFPTGIKAIDAFLTLGKG 157 (434)
T ss_pred CCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 999999899987677680614657268846448999999876-0524589948222168887554785567356772467
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 50375266788999999998740789838993124652238899998642-77553289841577880344444456777
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
||+||||++|+|||+|++||++++++|+|||++||||+||++||++++++ .+++||++|++|||+||.+|+++||+|||
T Consensus 158 QR~gIf~g~GvGKt~Ll~~ia~~~~~~v~V~alIGeR~rEv~efie~~~~~~~~~~tvvv~atsd~p~~~r~~a~~~a~a 237 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQHKEGLKAQRTIIIASPAHETAPTKVIAGRAAMT 237 (434)
T ss_pred CEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 67773079999789999867653678759998455138999999998661345210378750377887888999988767
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
+||||||||+||||+||||||||+|+||||+++||||+++|||||+|+.||+|+||||+ .++||||+||||++++||
T Consensus 238 iAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~gYp~svf~~l~~L~ERag~--~~~GSITa~~tVl~~~~~- 314 (434)
T PRK05922 238 IAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGN--NDKGSITALYAILHYPNH- 314 (434)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCCEEEEEEECCCC-
T ss_conf 99999977996799954788999999899986489998768894499987888860437--999655649899853898-
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20278999861260898704277589713114456400022120899999999999999999999999998523446999
Q gi|254780684|r 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD 400 (438)
Q Consensus 321 ~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d 400 (438)
+|||+|+++|||||||||||+ +++++||||||+.|+||+|+++++++|++++.++|++|++|+++|||+++|+|+.|+|
T Consensus 315 ~dpi~d~~~silDGhIvLsr~-~~~~~~PAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y~e~~dli~~G~y~~g~d 393 (434)
T PRK05922 315 PDIFTDYLKSLLDGHFFLTPQ-GKALASPPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYTPGQD 393 (434)
T ss_pred CCCCCCCCHHHEEEEEEECHH-HHHCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 765677333022224675354-6615789756566764514233569999999999999999999999998529767887
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 8999999999999998359988899976-899999870
Q gi|254780684|r 401 LILDKAVHQVPIIYDFLKQSPSDLSSED-VFQEITKKL 437 (438)
Q Consensus 401 ~~~d~~i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~~~l 437 (438)
+++|+++++++.|++||+|+.+|+++++ +++.+...+
T Consensus 394 ~~~D~ai~~~~~i~~fL~Q~~~e~~~~~~t~~~l~~l~ 431 (434)
T PRK05922 394 AHLDRAVKLLPSIKQFLSQPLSSYCALHNTLKQLEALL 431 (434)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 66999999999999971899999739999999999987
No 24
>TIGR00962 atpA ATP synthase F1, alpha subunit; InterPro: IPR005294 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the alpha subunit found in the F1 complex of F-ATPases. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha-subunit contains a highly conserved adenine-specific non-catalytic nucleotide-binding domain, with a conserved amino acid sequence of Gly-X-X-X-X-Gly-Lys. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself is driven by the movement of protons through the F0 complex C subunit . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=952.22 Aligned_cols=415 Identities=26% Similarity=0.373 Sum_probs=392.7
Q ss_pred HHHHHHHHHHHHCCCCE-EEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 69999999974133421-20128999952589998268888735189995699607999997419979999804855746
Q gi|254780684|r 4 NLETLAQLAEDYSKNLV-VQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEIS 82 (438)
Q Consensus 4 ~l~~l~~~~~~~~~~l~-~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~ 82 (438)
..+-+++.+++|+...- .+.|+|.+|.+++++|+||. .|..+|+++|+++ ..|.++++++|.|.+.+||+..+|.
T Consensus 7 i~~~I~~~I~~f~~~~~~~evG~V~sVgDGiArv~GL~-~vm~~El~eF~~G---~~GiAlNLEedsVG~vi~Gd~~~i~ 82 (520)
T TIGR00962 7 ISELIKQQIKNFEKDIEVEEVGTVVSVGDGIARVYGLE-NVMSGELVEFEGG---VQGIALNLEEDSVGAVILGDYSNIR 82 (520)
T ss_pred HHHHHHHHHHCCCCEEEEECCCEEEEECCCEEEEEECH-HHHHCCEEECCCC---CEEEEEEECCCCEEEEEECCCCCCC
T ss_conf 99999998626251013303627998338789996011-0140100255789---5899997135862489978866653
Q ss_pred CCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7888997288-555246668865430776304788777555301211254333000133110011124587520022358
Q gi|254780684|r 83 LGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHG 161 (438)
Q Consensus 83 ~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~G 161 (438)
.|+.|.+||+ +.+|||++|||||+|+||+||||+||+...+ +.+++..||..++|++++|||+|||||||+|+|||||
T Consensus 83 EG~~VKRTg~il~vPVG~~llGRvVn~LG~PiDGkGpI~~~~-~~~~E~~APGv~~RkSV~ePlQTGIkAIDAliPIGRG 161 (520)
T TIGR00962 83 EGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPIESDE-FRPIEKIAPGVIERKSVHEPLQTGIKAIDALIPIGRG 161 (520)
T ss_pred CCCCCCCCCHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 265032032000324575688326845778657777677666-3432145885521466787300005576414689876
Q ss_pred CEEEEECCCCCCHHHHH--HHHHHHC--------CCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHH
Q ss_conf 50375266788999999--9987407--------898389931246522388999986427-755328984157788034
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLL--SMFARSD--------CFDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPIL 230 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll--~~i~~~~--------~~dv~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~ 230 (438)
||.+|+||+.||||+++ +.|+|.. +..+|||++||++...|+..++++..+ +|+||+||+|||+||+.+
T Consensus 162 QRELIIGDRqTGKTavAIDtIiNQk~~~~~~~~~~dv~CvYVAIGQK~StvA~vv~~LE~~GAM~YTiVV~A~ASdsA~l 241 (520)
T TIGR00962 162 QRELIIGDRQTGKTAVAIDTIINQKDSGELGDEKKDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAASASDSASL 241 (520)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
T ss_conf 22234232666730565577773057765678655648999620753568999999975348711103367416772124
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCC--C-------
Q ss_conf 4444456777888864267988999709899999987665404778432366324554200444443113--6-------
Q gi|254780684|r 231 RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS--E------- 301 (438)
Q Consensus 231 r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~--~------- 301 (438)
+|+|||+||||||||||+|||||+||||||+||.|||+|||+|.|||||++|||||||.||||||||++. .
T Consensus 242 qYLAPY~G~tmaEyF~d~GkhaLIiYDDLSKqA~AYR~iSLLLRRPPGREAyPGDVFYLHSRLLERAAKLsdeYve~Ftk 321 (520)
T TIGR00962 242 QYLAPYTGCTMAEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEYVEKFTK 321 (520)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 54206889999999986597379997474078999999998718865871699740145456899986407888854305
Q ss_pred ---CCC-CCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHH
Q ss_conf ---788-5235543334216764202789998612608987042775897131144564000221208999999999999
Q gi|254780684|r 302 ---KEK-GNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLT 377 (438)
Q Consensus 302 ---~~~-GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~ 377 (438)
.|+ |||||||+|+|.++|+|.|||||++|||||||||..+||++|++||||++.|||||++.+|.+.++++|+.+|
T Consensus 322 GevkGgtGSlTALPIIETQAGDvSAYIPTNVISITDGQIFLesdLFn~GiRPAINvGlSVSRVGgAAQiKAmK~vaG~Lr 401 (520)
T TIGR00962 322 GEVKGGTGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSLR 401 (520)
T ss_pred CCCCCCCCCCCCCCCEEECCCCEEEECCCCEEECCCCHHHHHHHHHCCCCCCCEECCEEEEECCHHHHHHHHHHHCCCHH
T ss_conf 63246653523677225214878663078713524551121020110689871417566744203577665554235224
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999999999852344699989999999999999983599888999
Q gi|254780684|r 378 HLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSS 426 (438)
Q Consensus 378 ~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~ 426 (438)
..||+|+|++-|.+|+. ++|+.+++.|+++.++.+.|||+.+.|.|
T Consensus 402 LeLAQYRELeAFsQFaS---DLD~ATk~qLerG~R~vElLKQ~~~~P~p 447 (520)
T TIGR00962 402 LELAQYRELEAFSQFAS---DLDEATKAQLERGKRLVELLKQPQYKPLP 447 (520)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 55754889988864012---23489999986067234200068865885
No 25
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=910.68 Aligned_cols=419 Identities=27% Similarity=0.399 Sum_probs=397.6
Q ss_pred CHHHHHHHHHHHHHCCCCE-EEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCC
Q ss_conf 2369999999974133421-201289999525899982688887351899956996079999974199799998048557
Q gi|254780684|r 2 QKNLETLAQLAEDYSKNLV-VQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEE 80 (438)
Q Consensus 2 ~~~l~~l~~~~~~~~~~l~-~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~g 80 (438)
+++++.+++.++.|..++. .+.|+|.+|.++++++.||. .+..||+|.|++ .+.|+|++++++.+.+++|++..+
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~e~G~v~~vgdgia~v~Gl~-~~~~~el~~f~~---~~~g~~~nle~~~vg~v~lg~~~~ 81 (497)
T TIGR03324 6 DKAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLP-GVGFEELLRFPG---GLLGIAFNVDEDEVGVVLLGEYSH 81 (497)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEECCC-CCCCCCEEEECC---CCEEEEEECCCCCEEEEEECCCCC
T ss_conf 9999999999972488752466679999748569997850-104486388089---988999963788379999569877
Q ss_pred CCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 467888997288-5552466688654307763047887775553012112543330001331100111245875200223
Q gi|254780684|r 81 ISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC 159 (438)
Q Consensus 81 I~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig 159 (438)
|+.|+.|.+||+ +++|||++|||||+|++|+||||+|++... .++|+++++|++++|+++++||+||||+||+|+|||
T Consensus 82 i~~G~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDGkgpi~~~-~~~pie~~aP~i~~R~~V~epL~TGIkaID~liPIG 160 (497)
T TIGR03324 82 LQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASS-PRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIG 160 (497)
T ss_pred CCCCCEEEECCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 6899999858982287448887176458885567899998876-410245789896347888871002414554246556
Q ss_pred CCCEEEEECCCCCCHHHHH--HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 5850375266788999999--998740789838993124652238899998642-7755328984157788034444445
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPL 236 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll--~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~ 236 (438)
||||++|||++|+|||+|+ +++++....++|||++||||+|||++|++++++ ++|+||+||++|+|+||.+||+|||
T Consensus 161 rGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~~TvVV~Ata~dpa~lr~~Apy 240 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPY 240 (497)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 77467764588888008899999704566718999973250787999999987487523417999568899899988789
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCC--CCCCEEEEEEEE
Q ss_conf 677788886426798899970989999998766540477843236632455420044444311367--885235543334
Q gi|254780684|r 237 TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVL 314 (438)
Q Consensus 237 ~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~--~~GSiT~~~~v~ 314 (438)
+||||||||||||+|||++|||+||||+|||||||+++|||+|+|||||+||.||+|+||||+.++ ++||||++|+|+
T Consensus 241 aa~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFylhsrLLERA~~l~~~~ggGSiTalpive 320 (497)
T TIGR03324 241 AATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIE 320 (497)
T ss_pred HHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
T ss_conf 99999999996897489999780699999999998648999877889359877078887324778999997723247998
Q ss_pred ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 21676420278999861260898704277589713114456400022120899999999999999999999999998523
Q gi|254780684|r 315 VDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGG 394 (438)
Q Consensus 315 ~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~ 394 (438)
+++||+++|||||++|||||||||||+||++|+|||||++.|+||+++++|.+.++++++.+|..|++|+|++.+.+||.
T Consensus 321 t~~~D~sayIptnvisItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~~~~k~vag~lrl~laq~~El~~f~qfgs 400 (497)
T TIGR03324 321 TEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQFEELETFARFGA 400 (497)
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 02886566445422201086799724076579976435687731367243058999874456999998999999987624
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 4469998999999999999998359988899976
Q gi|254780684|r 395 YRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSED 428 (438)
Q Consensus 395 y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~ 428 (438)
++|+.+++.+.+++++.++|||+.+++.+.+
T Consensus 401 ---~ld~~t~~~l~rG~r~~e~lkQ~~~~p~~~~ 431 (497)
T TIGR03324 401 ---RLDENTRKTIEHGRRIRACLKQTQSSPLTVP 431 (497)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf ---4489999999887999998667778996999
No 26
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=0 Score=914.04 Aligned_cols=417 Identities=25% Similarity=0.357 Sum_probs=392.3
Q ss_pred HHHHHHHHHHHHHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCC
Q ss_conf 36999999997413342-12012899995258999826888873518999569960799999741997999980485574
Q gi|254780684|r 3 KNLETLAQLAEDYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEI 81 (438)
Q Consensus 3 ~~l~~l~~~~~~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI 81 (438)
++++.+++.++.|+... ..++|+|.+|.+++++|.||. .+..||+|+|+++ ..|+|++++++.+.+++|+++.+|
T Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~G~V~~v~dgi~~v~GL~-~~~~gel~~f~~~---~~g~v~~l~~d~v~~v~lg~~~~i 82 (502)
T PRK13343 7 SWLARIRQRIARYELAPDAQEIGRVESVGDGIAFVSGLP-DAALDELLRFDGG---SRGFAFNLEEELVGAVLLDDTADL 82 (502)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEEECCC-CCCCCCEEEECCC---CEEEEEECCCCEEEEEEECCCCCC
T ss_conf 999999999962688772367679999828679992674-1423888997899---779999414983999995598788
Q ss_pred CCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 67888997288-55524666886543077630478877755530121125433300013311001112458752002235
Q gi|254780684|r 82 SLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCH 160 (438)
Q Consensus 82 ~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~ 160 (438)
+.|+.|.+||+ +++|||++|||||+|++|+||||+|++... .++|+++++|||++|+++++||+||||+||+|+||||
T Consensus 83 ~~G~~V~~TG~~l~VpVG~~lLGRVvd~lG~PiDg~g~i~~~-~~~pi~~~ap~~~~R~~v~epL~TGIkaID~l~pigr 161 (502)
T PRK13343 83 RAGTEVKRTGRVLEVPVGDALLGRVIDPLGRPLDGGGPLEAT-ATRPIERPAPAIIERDSVTEPLQTGLKVIDALIPIGR 161 (502)
T ss_pred CCCCEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 999999968995488757310258737883443899998876-4321468897833216667543126067405566467
Q ss_pred CCEEEEECCCCCCHHHHH-HHH-HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 850375266788999999-998-740789838993124652238899998642-77553289841577880344444456
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLL-SMF-ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLT 237 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll-~~i-~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~ 237 (438)
|||+||||++|+|||+|+ .+| +++...++|||++||||+||+++|++++++ ++|+|||+|++++|+||.+|+++||+
T Consensus 162 GQR~gIfg~~GvGKT~L~~~~I~nq~~~~vi~Vyv~IGer~~ev~~~v~~l~~~gal~~tvvV~ata~~p~~~r~~ap~~ 241 (502)
T PRK13343 162 GQRELIIGDRQTGKTAIAIDAIINQKDKDVICVYVAIGQKASTVARVIDTLREHGALEYTTVVVAEASDPPGLQYLAPFA 241 (502)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 85775136788880489999999725788749999960451659899999876485131224523778986887555665
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCC--CCCCCEEEEEEEEE
Q ss_conf 7778888642679889997098999999876654047784323663245542004444431136--78852355433342
Q gi|254780684|r 238 AVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE--KEKGNITAVISVLV 315 (438)
Q Consensus 238 a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~--~~~GSiT~~~~v~~ 315 (438)
||||||||||||+|||+++||+||||+||||||+++||||+++|||||+||.||+|+||||+.+ +++||||+||+|++
T Consensus 242 a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlERa~~~~~~~ggGSITalp~V~~ 321 (502)
T PRK13343 242 GCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERATKLSPELGGGSLTALPIIET 321 (502)
T ss_pred HCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf 20257999966996799995668999999899997489987667694588772689988875268899846645169972
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 16764202789998612608987042775897131144564000221208999999999999999999999999985234
Q gi|254780684|r 316 DGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGY 395 (438)
Q Consensus 316 ~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y 395 (438)
++||++||||||++|||||||||||+||++|||||||++.|+||+|+++|.+.|+++++.+|..|++|+|++.+.+||.
T Consensus 322 ~~dDis~pIp~~v~sItDGqIvLsr~La~~G~~PAIdv~~SvSRVg~~aq~~~~k~va~~lr~~laqy~el~~f~~fg~- 400 (502)
T PRK13343 322 QAGDLAAYIPTNLISITDGQIFLDSDLFASGQRPAVDVGKSVSRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGA- 400 (502)
T ss_pred CCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 4887566345656522261699724532268378517877613568577889999999999999998999999998743-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 46999899999999999999835998889997
Q gi|254780684|r 396 RPGVDLILDKAVHQVPIIYDFLKQSPSDLSSE 427 (438)
Q Consensus 396 ~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~ 427 (438)
++|++++..+.++++|++||+|+.+++.+.
T Consensus 401 --~ld~~~~~~l~rg~r~~~~lkQ~~~~p~~~ 430 (502)
T PRK13343 401 --RLDAGTRKQITRGRRLRELLKQPRFSPLSV 430 (502)
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf --589999999999999999857888999789
No 27
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=0 Score=899.68 Aligned_cols=414 Identities=25% Similarity=0.367 Sum_probs=391.9
Q ss_pred HHHHHHHHHHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99999997413342-12012899995258999826888873518999569960799999741997999980485574678
Q gi|254780684|r 6 ETLAQLAEDYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 6 ~~l~~~~~~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
+-+++.++.|..+. ..+.|+|.+|.+++++|.||. .+..||++.|+++ +.|.|++++++.+.+.+|++..+|+.|
T Consensus 11 ~~i~~~i~~~~~~~~~~e~G~V~~v~DGia~v~GL~-~~~~~Elv~f~~g---~~G~vlnLe~~~vg~vllg~~~~i~eG 86 (501)
T CHL00059 11 NIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLD-EVMAGELVEFEEG---TIGIALNLESNNVGVVLMGDGLMIQEG 86 (501)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCC-CCCCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 999999983587775203479999706279982673-1255864996899---879998437880699997698776899
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
+.|++||+ +++|||++|||||+|++|+||||+|++... .++|++++||++++|+++++||+||||+||+|+|||||||
T Consensus 87 ~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDgkg~i~~~-~~~pie~~aP~~~~R~~V~epL~TGIkaID~l~PiGrGQR 165 (501)
T CHL00059 87 SSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISAS-ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQR 165 (501)
T ss_pred CEEEECCCEEEEECCHHHCCCEECCCEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCE
T ss_conf 988857972477457523147406877544799988987-5010437997850446667423234211100367667756
Q ss_pred EEEECCCCCCHHHHH--HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 375266788999999--998740789838993124652238899998642-77553289841577880344444456777
Q gi|254780684|r 164 IGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll--~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
+|||||+|+|||+|+ .+++|..+.++|||++||||+||+++|++++++ ++|+||+||++++|+||.+||+|||+|||
T Consensus 166 ~lI~Gd~gvGKTtl~~d~Iinqk~~~vicVyvaIGeR~reV~~~i~~l~~~gam~~TvvV~Atadepa~lr~~Apyaa~a 245 (501)
T CHL00059 166 ELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAA 245 (501)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67755788447799999998524688489999855627789999999975697103699961799999999999999999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCC--CCCCEEEEEEEEECCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367--8852355433342167
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVLVDGD 318 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~--~~GSiT~~~~v~~~~d 318 (438)
|||||||||+|||++|||+||||+|||||||++||||+|+|||||+||.||+|+||||+.+. ++||||++|+|++++|
T Consensus 246 IAEyFrdqGkdVLlv~DdLTr~A~A~REisLllgrPPgregYPgdVFylhsrLlERa~kl~~~~ggGSiTalpivet~~~ 325 (501)
T CHL00059 246 LAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSG 325 (501)
T ss_pred HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCC
T ss_conf 99999977982899986826988999998986489997667896288785789877650578999884788889982388
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64202789998612608987042775897131144564000221208999999999999999999999999985234469
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPG 398 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g 398 (438)
|+++|||||++||||||||||++||++|+|||||++.|+||+++++|.+.+++++..+|..|++|+|++.+.+||. .
T Consensus 326 D~s~yIptnviSItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~k~~k~va~~lrl~laq~~el~~f~~f~~---~ 402 (501)
T CHL00059 326 DVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFAS---D 402 (501)
T ss_pred CCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_conf 6455554104440574299856555277774345455511256176789999987787999998999999998623---3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 99899999999999999835998889997
Q gi|254780684|r 399 VDLILDKAVHQVPIIYDFLKQSPSDLSSE 427 (438)
Q Consensus 399 ~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~ 427 (438)
+|+.++..+.++++|.++|+|+++++.+.
T Consensus 403 ld~~t~~~l~rg~r~~e~lkQ~~~~p~~~ 431 (501)
T CHL00059 403 LDKATQNQLARGQRLRELLKQSQSAPLTV 431 (501)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 59999999998999999867888999699
No 28
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=0 Score=891.73 Aligned_cols=414 Identities=25% Similarity=0.371 Sum_probs=388.9
Q ss_pred HHHHHHHHHHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99999997413342-12012899995258999826888873518999569960799999741997999980485574678
Q gi|254780684|r 6 ETLAQLAEDYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 6 ~~l~~~~~~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
+-+++.++.|+.+. ..+.|+|.+|.+++++|.||. .+..||+|.|++ .+.|+|++++++.+.+++|+++.+|+.|
T Consensus 10 ~~i~~~i~~~~~~~~~~~~G~V~~v~dgia~v~GL~-~~~~~elv~f~~---g~~g~~~nle~d~vg~v~lg~~~~i~~G 85 (502)
T PRK09281 10 SIIKQQIENFDAEAEVREVGTVLSVGDGIARVYGLD-NVMAGELLEFPG---GVYGIALNLEEDSVGAVILGDYEDIKEG 85 (502)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCC-CCCCCCEEEECC---CCEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 999999982488774124469999817389995775-356488699689---9879998247882799994685556899
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
+.|.+||+ +++|||++|||||+|++|+||||+|++... .++|+++++|++++|+++++||+||||+||+|+|||||||
T Consensus 86 ~~V~~TG~~~~VPVG~~lLGRVvd~lG~PiDGkgpi~~~-~~~pie~~aP~i~~R~~V~epL~TGIkaID~l~PiGrGQR 164 (502)
T PRK09281 86 DTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPINAT-ETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQR 164 (502)
T ss_pred CEEEECCCCEEEECCHHHHCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE
T ss_conf 989857982577567523033206774526899988886-0313558896851357767523311355541256568756
Q ss_pred EEEECCCCCCHHHH-HHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 37526678899999-999874078-98389931246522388999986427-7553289841577880344444456777
Q gi|254780684|r 164 IGVFAGSGIGKSTL-LSMFARSDC-FDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 164 ~gIfg~~GvGKt~L-l~~i~~~~~-~dv~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
+|||||+|+|||+| +.+|.++++ ..+|||++||||+||+++|++++.+. +|+||+||++++++||.+||++||+|||
T Consensus 165 ~lIiGd~gtGKT~iaidtIinqk~~~vicVyvaIGer~seV~~~v~~L~~~gal~~TvvV~ata~dpa~lr~~Apyaa~a 244 (502)
T PRK09281 165 ELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVANVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCA 244 (502)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 67524787338899999998532588369999851221789999998754486411379971799999999999999999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCC--CCCCEEEEEEEEECCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367--8852355433342167
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVLVDGD 318 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~--~~GSiT~~~~v~~~~d 318 (438)
|||||||+|+|||++|||+||||+||||||++++|||+|+|||||+||.||+|+||||+.++ ++||||++|+|+|++|
T Consensus 245 IAEyFrd~G~dVLlv~DdLtr~A~A~REisLll~rPPgreaYPgdVFylhsrLlERa~~l~~~~ggGSiTalpivet~a~ 324 (502)
T PRK09281 245 MGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAG 324 (502)
T ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCC
T ss_conf 99999967994899985568999999888986279987667894077786799887651478899840676766660488
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64202789998612608987042775897131144564000221208999999999999999999999999985234469
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPG 398 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g 398 (438)
|+++|||||++|||||||||||+||++|+|||||++.|+||+++++|.+.++++++.+|..|++|+|++.+.+||. +
T Consensus 325 DvsayIptnvisItDGqI~L~~~L~~~G~~PAIdvg~SVSRVG~~aQ~k~~k~vag~lrl~laqy~el~~fa~fgs---d 401 (502)
T PRK09281 325 DVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGS---D 401 (502)
T ss_pred CCCCCCCCCCEEEECCEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C
T ss_conf 6556544020234144699864276689875014455333467502449999999999999999999999997535---6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 99899999999999999835998889997
Q gi|254780684|r 399 VDLILDKAVHQVPIIYDFLKQSPSDLSSE 427 (438)
Q Consensus 399 ~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~ 427 (438)
+|+.+++.+.+++++++||+|+.+++.+.
T Consensus 402 ld~~t~~~l~rg~r~~e~LkQ~~~~p~~~ 430 (502)
T PRK09281 402 LDEATRAQLERGQRLVELLKQPQYSPLPV 430 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 69999999999999999867888999699
No 29
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=0 Score=886.36 Aligned_cols=414 Identities=28% Similarity=0.407 Sum_probs=385.6
Q ss_pred EEEEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCC-CCEEEECCC-CEEEC
Q ss_conf 2012899995258999826888873518999569-96079999974199799998048557467-888997288-55524
Q gi|254780684|r 21 VQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISL-GDLVFHWGR-FRISP 97 (438)
Q Consensus 21 ~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~-G~~V~~~g~-~~i~v 97 (438)
++||+|.+|.|+++.++|+. .+.+||+|.|+.. +...+|||++|+++++.+|+|+++.||++ |++|.+||+ +++++
T Consensus 2 ~~Yg~V~~I~Gplv~~~g~~-~~~~gElv~I~~~~g~~~~GeVi~~~~d~~~iqv~e~t~Gl~~~g~~V~~tG~plsV~v 80 (460)
T PRK04196 2 KEYRTVSEIVGPLMFVEGVE-GVAYGELVEIELPNGEKRRGQVLEVSGDKAVVQVFEGTTGLNLKGTKVRFTGETLELPV 80 (460)
T ss_pred CCCCEEEEEECCEEEEECCC-CCCCCCEEEEECCCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCCEEEECCCCEEEEE
T ss_conf 42326999988689992588-89878789998399988889999986997999991598887859978994799528871
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 66688654307763047887775553012112543330001331100111245875200223585037526678899999
Q gi|254780684|r 98 SACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTL 177 (438)
Q Consensus 98 G~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~L 177 (438)
|++|||||+|++|+|||++|++... .++++++.||||++|.++++||+||||+||+|+|++||||++||+|+|+|||+|
T Consensus 81 G~~lLGRV~DglGrPlDg~~~i~~~-~~~~i~g~~~np~~R~~~~e~l~TGI~~ID~l~pl~rGQr~~If~gsGvgks~l 159 (460)
T PRK04196 81 SEDMLGRIFDGLGRPIDGGPEIIPE-KRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNEL 159 (460)
T ss_pred CHHHHCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCCHHHCCCCCEECCCCEEEECCCCEECCCEEEEECCCCCCCCHH
T ss_conf 8777279847788636889988877-341258899892552688846137967961643322475765533899881169
Q ss_pred HHHHHHHC------CCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HCC
Q ss_conf 99987407------8983899312465223889999864277-553289841577880344444456777888864-267
Q gi|254780684|r 178 LSMFARSD------CFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFS-SKG 249 (438)
Q Consensus 178 l~~i~~~~------~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr-~~G 249 (438)
++||++|+ ++++|||++||||+||+++|++++.+.+ |+|||+|+||||+||++|+++||+|+|+||||| |||
T Consensus 160 ~~~i~~qa~~~~~~~~~~vV~~~iGeR~~E~~e~~~~~~~~g~m~rtvlv~~ts~~p~~~R~~~~~~a~tiAEyfr~d~G 239 (460)
T PRK04196 160 AAQIARQAKVLGSEEKFAVVFAAMGITFEEANFFMDEFEETGALERSVLFLNLADDPAIERILTPRMALTTAEYLAFEKG 239 (460)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999987750578881599973207606899999988744863200475135889889988887666578999998569
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHH
Q ss_conf 98899970989999998766540477843236632455420044444311367885235543334216764202789998
Q gi|254780684|r 250 DNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVR 329 (438)
Q Consensus 250 ~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~ 329 (438)
+|||++|||+||||+|+||||+++||||+++|||||+|+.||+||||||+.++.+||||+||+|++||||+||||||+++
T Consensus 240 ~~VL~~~dd~tr~A~A~REis~~lge~P~~~GYP~~l~s~la~l~ERAG~~~~~~GSIT~i~~V~~pgdD~t~Pi~~~t~ 319 (460)
T PRK04196 240 MHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATLYERAGRIKGKKGSITQIPILTMPEDDITHPIPDLTG 319 (460)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHH
T ss_conf 95799975807888876688875479998777686268886888872355578983269999997679876664677676
Q ss_pred HHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 6126089870427758971311445640002212089-----99999999999999999999999985234469998999
Q gi|254780684|r 330 SILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWS-----ADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILD 404 (438)
Q Consensus 330 ~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~-----~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d 404 (438)
+||||||+|||+||++||||||||+.|+||+|++.++ ++|++++++++..|++|+|+++++++.+. ..++++.+
T Consensus 320 ~i~dg~i~L~r~La~~g~yPaId~l~S~SR~~~~~ig~~~~~~~h~~va~~~~~~la~~~el~~i~~lvG~-d~Ls~~dk 398 (460)
T PRK04196 320 YITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHADVSNQLYAAYARGKDLRELAAIVGE-EALSERDR 398 (460)
T ss_pred HHCCEEEEECHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHH
T ss_conf 44043899838999679988788765501102033565521668999999999999978889999998496-01898899
Q ss_pred HHHHHHHHHH-HHHCCCCCCCCC-HHHHHHHHHHC
Q ss_conf 9999999999-983599888999-76899999870
Q gi|254780684|r 405 KAVHQVPIIY-DFLKQSPSDLSS-EDVFQEITKKL 437 (438)
Q Consensus 405 ~~i~~~~~i~-~fl~Q~~~e~~~-~~~~~~~~~~l 437 (438)
..++++++|+ +||+|+.++..+ ++++...++.|
T Consensus 399 ~~l~~a~~~~~~fL~Q~~~~~~~~~~~l~~~~~~l 433 (460)
T PRK04196 399 KYLKFADAFEREFVNQGFYENRSIEETLDLGWELL 433 (460)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999989999854799999848999999999999
No 30
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=0 Score=883.74 Aligned_cols=408 Identities=29% Similarity=0.415 Sum_probs=378.0
Q ss_pred EEEEEEEECCEEEEECCCCCCCCCCEEEEE-CCCCCEEEEEEE-ECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCH
Q ss_conf 128999952589998268888735189995-699607999997-4199799998048557467888997288-5552466
Q gi|254780684|r 23 GGYISSITSVYYTVTCLSQYVCLGDFVVHQ-GKNSDNLGQVIR-INLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSA 99 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~-~~~~~v~geVi~-~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~ 99 (438)
.|+|++|.|+++++++. .+.+|++|.+. .++..+.+||++ ++++.+.+++|+++.||++|++|..+|+ +++|||+
T Consensus 3 ~GrV~~V~G~vVev~~~--~~~l~~i~~i~~~~~~~~~~EVv~~l~~~~v~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~ 80 (459)
T PRK12597 3 IGRIIKIRGAVVDVEFE--EGALPAINQALTTHDGPTLLEVKQHLDETTVRAIALGSTAGLARGDEVRNTGAPIEVPVGE 80 (459)
T ss_pred CEEEEEEECCEEEEEEC--CCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCEEEEECH
T ss_conf 37999998428999957--8887770589992799589999798479879999813877888999999689945987086
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 68865430776304788777555301211254333000133110011124587520022358503752667889999999
Q gi|254780684|r 100 CWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLS 179 (438)
Q Consensus 100 ~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~ 179 (438)
+|||||+|++|+|||+++++... .++|+++++||+++|.++++||+||||+||+|+||+||||+|||||+|+|||+|+.
T Consensus 81 ~lLGRV~d~lG~PiDg~~~i~~~-~~~pi~~~~p~~~~r~~~~e~l~TGIkaID~l~pigrGqrigIfggaGvGKTvL~~ 159 (459)
T PRK12597 81 AVLGRLLDVLGEPLDGGPPLPAE-ERRPIHSTIPPLAEQDTSTELLETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMM 159 (459)
T ss_pred HHCCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHH
T ss_conf 33368767888626888888877-45554678998433577787200380555412663578777743689998215789
Q ss_pred HHHHHC---CCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 987407---8983899312465223889999864277-5532898415778803444444567778888642-6798899
Q gi|254780684|r 180 MFARSD---CFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSS-KGDNVLL 254 (438)
Q Consensus 180 ~i~~~~---~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~-~G~~Vll 254 (438)
||++|. +.++|||++||||+||++||++++.+++ |+|||+|++|||+||++|+++||+|+|+|||||| +|+||||
T Consensus 160 ~ii~n~~~~~~~v~V~~~iGER~rEv~e~~~el~~~g~l~~tvvV~~~~depp~~R~~~~~~a~tiAEyFrD~~g~dVLl 239 (459)
T PRK12597 160 ELIFNISKRHQGSSVFAGVGERSREGHELYLEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTAAEYFRDEEKEDVLL 239 (459)
T ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99998775517836888624546889999999863687524899980688999999877778889999998637997899
Q ss_pred EEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 97098999999876654047784323663245542004444431136788523554333421676420278999861260
Q gi|254780684|r 255 ILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDG 334 (438)
Q Consensus 255 ~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG 334 (438)
+|||+||||+|+||||+++||||+++||||++|+++++|+||+|+ .++||||+||||++|+||+||||||+++|||||
T Consensus 240 ~~D~ltR~A~A~rEisl~lge~P~~~GY~psl~~~l~~l~ER~~~--~~~GSIT~~~~V~v~~dD~tdPi~~~~~silDg 317 (459)
T PRK12597 240 FIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAALQERIAS--TKNGSITSIQAVYVPADDLTDPAAVAIFSHLDS 317 (459)
T ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEEEEEEECCCCCCCCCHHHHEEECCE
T ss_conf 955768999999999986379998667695178889999987516--899751267899814888677525543110342
Q ss_pred EEEEEHHHHHCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8987042775897131144564000221-208999999999999999999999999985234469998999999999999
Q gi|254780684|r 335 HIVLNRSLAEEGRYPPVDPLASVSRLAD-KAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPII 413 (438)
Q Consensus 335 ~i~L~r~la~~g~~Paid~~~S~SR~~~-~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i 413 (438)
||+|||+||++||||||||+.|+||+|+ ++++++|++++.++|++|++|+|+||++++.++.+ ++++.+..+++++++
T Consensus 318 ~ivLsr~la~~g~yPAID~l~S~SR~m~~~ivg~~H~~~a~~~~~~l~~y~eledii~i~G~de-Ls~~d~~~v~rar~l 396 (459)
T PRK12597 318 SVVLSRDQAAKGIYPAIDPLASSSRLLDPLVVGERHYDAAIEVKRILQRYKELEDVIAILGIDE-LSAEDKIIVKRARQL 396 (459)
T ss_pred EEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH
T ss_conf 8998255877799976676665322478766999999999999999999889999999758510-799999999999999
Q ss_pred HHHHCCCCCC-------CCCHHHHHHHHHH
Q ss_conf 9983599888-------9997689999987
Q gi|254780684|r 414 YDFLKQSPSD-------LSSEDVFQEITKK 436 (438)
Q Consensus 414 ~~fl~Q~~~e-------~~~~~~~~~~~~~ 436 (438)
++||+|+.+- +..+.++++++..
T Consensus 397 ~~fl~Qpf~v~e~ftg~~g~~v~~~~t~~~ 426 (459)
T PRK12597 397 QRFLTQPFFVTEAFTGQPGVSVPLEETLAS 426 (459)
T ss_pred HHHHCCCCHHHHHHCCCCCEEEEHHHHHHH
T ss_conf 998658711334414899708519999999
No 31
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=0 Score=879.44 Aligned_cols=411 Identities=28% Similarity=0.415 Sum_probs=378.2
Q ss_pred EEEEEEEEECCEEEEECCCCC-CCCCCEEEEECCCCCEEEEEEE-ECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECC
Q ss_conf 012899995258999826888-8735189995699607999997-4199799998048557467888997288-555246
Q gi|254780684|r 22 QGGYISSITSVYYTVTCLSQY-VCLGDFVVHQGKNSDNLGQVIR-INLDIVYICPVGIGEEISLGDLVFHWGR-FRISPS 98 (438)
Q Consensus 22 ~~G~V~~V~G~ii~v~Gl~~~-v~iGelv~i~~~~~~v~geVi~-~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG 98 (438)
..|+|++|.|+++++++.... ..+++.|.+..++..+.+||++ +.++.+.+++++++.||.+|++|..||+ +++|||
T Consensus 4 ~~G~V~~V~G~vV~v~~~~~~lp~i~~~l~~~~~~~~~~~EV~~~~g~~~v~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG 83 (466)
T PRK09280 4 NTGKIVQVIGPVVDVEFPEGELPKIYNALEVENGGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVKDTGAPISVPVG 83 (466)
T ss_pred CCEEEEEEECCEEEEEECCCCCCCHHEEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCEEEEEC
T ss_conf 74389999822899982787754121399975899569999889966986999974686787899999958995498708
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 66886543077630478877755530121125433300013311001112458752002235850375266788999999
Q gi|254780684|r 99 ACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178 (438)
Q Consensus 99 ~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll 178 (438)
++|||||+|++|+|||+++++... .+||++++||++++|.++++||+||||+||+|+|||||||+|||||+|||||+|+
T Consensus 84 ~~lLGRV~d~lG~PiDg~g~i~~~-~~~pi~~~~p~~~~r~~~~e~l~TGIkaID~l~pigkGqrigIfggaGvGKTvLl 162 (466)
T PRK09280 84 KATLGRIFNVLGEPIDEAGPIGAE-ERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI 162 (466)
T ss_pred HHHCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCHHHH
T ss_conf 644278868777526789987676-5456567898632356778630018132223167137747985579999800899
Q ss_pred HHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEE
Q ss_conf 998740---78983899312465223889999864277-5532898415778803444444567778888642-679889
Q gi|254780684|r 179 SMFARS---DCFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSS-KGDNVL 253 (438)
Q Consensus 179 ~~i~~~---~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~-~G~~Vl 253 (438)
.++++| ...++|||++||||+||++||++++++++ |+||++|++|||+||++|+++||+|+|+|||||| ||+|||
T Consensus 163 ~eli~n~a~~~~~v~V~a~IGER~rE~~e~~~e~~~~g~l~~tvlV~~~~depp~~R~~~~~~a~tiAEyFRD~~g~dVL 242 (466)
T PRK09280 163 MELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVL 242 (466)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999865990999971423688999999766428763489999658899689999999999999998861798289
Q ss_pred EEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 99709899999987665404778432366324554200444443113678852355433342167642027899986126
Q gi|254780684|r 254 LILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILD 333 (438)
Q Consensus 254 l~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~D 333 (438)
|+|||+||||+|+||||+++||||+++|||||+|++|++|+||+|+ .++||||+||+|++|+||+||||||+++||||
T Consensus 243 l~~D~ltRfa~A~rEvslllge~Ps~~GYppsl~~~l~~L~ER~~~--~~~GSIT~i~~V~vp~DD~tdPi~~~~~silD 320 (466)
T PRK09280 243 LFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITS--TKKGSITSVQAVYVPADDLTDPAPATTFAHLD 320 (466)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHCC
T ss_conf 9972668999999999986279998778894289898999985246--89986137899995488777871776523134
Q ss_pred CEEEEEHHHHHCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 08987042775897131144564000221-20899999999999999999999999998523446999899999999999
Q gi|254780684|r 334 GHIVLNRSLAEEGRYPPVDPLASVSRLAD-KAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPI 412 (438)
Q Consensus 334 G~i~L~r~la~~g~~Paid~~~S~SR~~~-~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~ 412 (438)
|||+|||+||++||||||||+.|+||+|+ .+++++|++++.++|++|++|+|+||+|++.++.+ ++++.+..++++++
T Consensus 321 g~ivLsR~La~~G~yPAID~l~S~SRvm~p~ivg~~H~~~a~~vr~~L~~Y~elediIailG~de-Ls~~dk~~v~rar~ 399 (466)
T PRK09280 321 ATTVLSRQIAELGIYPAVDPLDSTSRILDPLVVGEEHYDVAREVQQILQRYKELQDIIAILGMDE-LSEEDKLTVARARK 399 (466)
T ss_pred EEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
T ss_conf 07997265876799998686654012578321899999999999999998888999999748410-79989999999999
Q ss_pred HHHHHCCCCC--C-----CCCHHHHHHHHHH
Q ss_conf 9998359988--8-----9997689999987
Q gi|254780684|r 413 IYDFLKQSPS--D-----LSSEDVFQEITKK 436 (438)
Q Consensus 413 i~~fl~Q~~~--e-----~~~~~~~~~~~~~ 436 (438)
|++||+||.+ | +..+.++++++..
T Consensus 400 l~~fL~Qpf~vae~ftg~~g~~v~l~~t~~~ 430 (466)
T PRK09280 400 IQRFLSQPFFVAEVFTGSPGKYVPLKDTIRG 430 (466)
T ss_pred HHHHHCCCCEEHHCCCCCCCEEEEHHHHHHH
T ss_conf 9998659864100026989528529999999
No 32
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=873.87 Aligned_cols=408 Identities=25% Similarity=0.369 Sum_probs=374.6
Q ss_pred EEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEE-EECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 2899995258999826888873518999569960799999-74199799998048557467888997288-555246668
Q gi|254780684|r 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVI-RINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi-~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
|+|++|.|+++++++......+++.+.+..++ .+..||+ .|+++.+.+++|++++||++|++|..||+ +++|||++|
T Consensus 1 G~V~~V~G~VVdv~f~~~~p~i~~~l~~~~~~-~~~~ev~~~l~~~~V~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~~l 79 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREG-EVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT 79 (449)
T ss_pred CEEEEEECCEEEEEECCCCCCHHCEEEECCCC-CEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCEEEECCCCC
T ss_conf 96999976479999068775020188957999-59998701227988999990487788899999928995488717210
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86543077630478877755530121125433300013311001112458752002235850375266788999999998
Q gi|254780684|r 102 CGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 102 LGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
||||+|++|+|||+++++.. ..++|+++.|||+++|.+++|||+||||+||+|+|||||||+|||||+|+|||+|+.+|
T Consensus 80 LGRV~d~lG~PiDg~g~i~~-~~~~~i~~~~p~~~~R~~~~e~l~TGIkaID~l~pigrGqr~gIfggaGvGKT~Ll~e~ 158 (449)
T TIGR03305 80 LSRMFDVFGNTIDRREPPKD-VEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEM 158 (449)
T ss_pred CCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEECCCEEHHHCCCCCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 67888056654678999887-64132357899855567778640028440230245245756566527999841018999
Q ss_pred HHH---CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEE
Q ss_conf 740---78983899312465223889999864277-553289841577880344444456777888864-2679889997
Q gi|254780684|r 182 ARS---DCFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFS-SKGDNVLLIL 256 (438)
Q Consensus 182 ~~~---~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr-~~G~~Vll~~ 256 (438)
++| .++++|||++||||+||+++|++++.+++ |+||++|+++||+||.+|+++||+|||+||||| ++|+|||++|
T Consensus 159 i~n~~~~~~~v~V~~~IGER~rE~~e~~~el~~~g~l~~tv~V~a~~depp~~R~~~~~~a~tiAEyfrd~~g~dVLl~~ 238 (449)
T TIGR03305 159 IHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLI 238 (449)
T ss_pred HHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 98656414886899997452167999999987536654269998369898799999999877699998861798089999
Q ss_pred ECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEE
Q ss_conf 09899999987665404778432366324554200444443113678852355433342167642027899986126089
Q gi|254780684|r 257 DSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHI 336 (438)
Q Consensus 257 Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i 336 (438)
||+||||+|+||||+++||||+++|||||+|+.|++|+||+|+ .++||||+||+|++|+||+||||||+++|||||||
T Consensus 239 D~ltr~a~A~rEvsl~lg~~P~~~GYpp~vf~~l~~L~ER~~~--~~~GSITa~~~V~~~~dD~tdPi~~~~~silDg~i 316 (449)
T TIGR03305 239 DNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIAT--TSDGAITSIQAVYVPADDFTDPAAVHTFSHLSASL 316 (449)
T ss_pred ECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEEEEEECCCCCCCCCHHHHHEEECCCEE
T ss_conf 6768999999899986389998778797199998999985248--99986678878971388766755554310127027
Q ss_pred EEEHHHHHCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 87042775897131144564000221-20899999999999999999999999998523446999899999999999999
Q gi|254780684|r 337 VLNRSLAEEGRYPPVDPLASVSRLAD-KAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYD 415 (438)
Q Consensus 337 ~L~r~la~~g~~Paid~~~S~SR~~~-~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~ 415 (438)
+|||+||++|+||||||+.|+||+|+ .+++++|++++.++|++|++|+|++|++++.++. .+|++.+..+++++++++
T Consensus 317 vLsr~la~~G~yPAId~l~S~SRv~~~~iv~~~H~~va~~~~~~la~y~el~diiai~G~~-eL~~~dk~~v~ra~rl~~ 395 (449)
T TIGR03305 317 VLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLE-QLSREDRRVVNRARRLER 395 (449)
T ss_pred EEEHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 8707689679999717763355348810067999999999999999889999999874851-069999999999999999
Q ss_pred HHCCCCC-------CCCCHHHHHHHHHH
Q ss_conf 8359988-------89997689999987
Q gi|254780684|r 416 FLKQSPS-------DLSSEDVFQEITKK 436 (438)
Q Consensus 416 fl~Q~~~-------e~~~~~~~~~~~~~ 436 (438)
||+||.+ .+..+.++++++..
T Consensus 396 fL~Qpf~vae~ftg~~G~~v~l~~t~~~ 423 (449)
T TIGR03305 396 FLTQPFFTTEQFTGMKGKTVSLEDALDG 423 (449)
T ss_pred HHCCCCCHHHHHCCCCCEEECHHHHHHH
T ss_conf 8579851123225989518619999999
No 33
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=0 Score=860.89 Aligned_cols=412 Identities=26% Similarity=0.388 Sum_probs=371.8
Q ss_pred EEEEEEEEEECCEEEEECCCCC-CCCCCEEEEECCC-----CCEEEEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCC-
Q ss_conf 2012899995258999826888-8735189995699-----60799999741-99799998048557467888997288-
Q gi|254780684|r 21 VQGGYISSITSVYYTVTCLSQY-VCLGDFVVHQGKN-----SDNLGQVIRIN-LDIVYICPVGIGEEISLGDLVFHWGR- 92 (438)
Q Consensus 21 ~~~G~V~~V~G~ii~v~Gl~~~-v~iGelv~i~~~~-----~~v~geVi~~~-~~~~~l~~~~~~~gI~~G~~V~~~g~- 92 (438)
...|+|++|.|+++++++.... ..+++.|.+.+++ ..+.+||.++- ++.+.+++|+++.||.+|++|..||+
T Consensus 8 k~~GrV~~V~G~VVdv~fp~~~lp~i~~~l~~~~~~~~g~~~~~~~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~ 87 (480)
T CHL00060 8 KNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAP 87 (480)
T ss_pred CCCCEEEEEEEEEEEEEECCCCCCHHHHEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 67608999993269999378774214443242477877764418999999946997999965687788998999958995
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 55524666886543077630478877755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 93 FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 93 ~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
+++|||++|||||+|++|+|||++||+... .++|++++||++++|.+++++|+||||+||+|+|||||||+|||||+|+
T Consensus 88 l~VPVG~~lLGRV~d~lG~PiDg~gpi~~~-~~~pi~~~aP~~~~r~~~~e~leTGIkaID~l~pigkGQRigIfggaGv 166 (480)
T CHL00060 88 LSVPVGGATLGRIFNVLGEPVDNLGPVDTR-TTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGV 166 (480)
T ss_pred EEEEECHHHCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 498728533168788888835788998766-5032567899855556778611027044431254003668876568998
Q ss_pred CHHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHCCC-C-------CCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999998740---78983899312465223889999864277-5-------532898415778803444444567778
Q gi|254780684|r 173 GKSTLLSMFARS---DCFDKVIISLVGERGREVREFIEDYLGDN-L-------KKSVVVVATSDESPILRKMAPLTAVTI 241 (438)
Q Consensus 173 GKt~Ll~~i~~~---~~~dv~V~alIGeR~rev~efi~~~~~~~-l-------~~tvvv~~t~d~~~~~r~~a~~~a~~i 241 (438)
|||+|+.++++| +++++|||++||||+||+++|++++.+.+ + +++++|++++|+||++|+++||+|+|+
T Consensus 167 GKTvLl~eli~niak~~~~v~V~a~IGER~RE~~e~~~e~~e~gvl~~~~~~~s~~vlV~~~~depp~~R~~~~~~a~ti 246 (480)
T CHL00060 167 GKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTM 246 (480)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 87899999996120037988999996677367999999998718553355443048999735678768899999998889
Q ss_pred HHHHHHCC-CCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88864267-98899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 242 AEYFSSKG-DNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 242 AEyfr~~G-~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
||||||++ +||||+|||+||||+|+||||+++||||+++|||||+|++|++|+||+++. ++||||+||+|++|+||+
T Consensus 247 AEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppslf~~l~~L~ER~~~~--~~GSITa~~~V~v~~DD~ 324 (480)
T CHL00060 247 AEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST--KEGSITSIQAVYVPADDL 324 (480)
T ss_pred HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCEEEEEEEEECCCCC
T ss_conf 999987489708999546289998887899862799986678964888877888863278--887415677897037766
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 202789998612608987042775897131144564000221-2089999999999999999999999999852344699
Q gi|254780684|r 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD-KAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV 399 (438)
Q Consensus 321 ~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~-~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~ 399 (438)
+|||||+++|||||||+|||+||++||||||||+.|+||+|+ .+++++|++++.++|++|++|+|+||+|++.++.+ +
T Consensus 325 tdPip~~~~silDg~ivLsr~La~~g~yPAID~l~S~Sr~m~p~iv~~~H~~~a~~v~~~L~~Y~el~diIailG~de-L 403 (480)
T CHL00060 325 TDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDE-L 403 (480)
T ss_pred CCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C
T ss_conf 676145552212514998365887899897375201000479764899999999999999999899999999758642-7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCC-------CCCCHHHHHHHHHH
Q ss_conf 98999999999999998359988-------89997689999987
Q gi|254780684|r 400 DLILDKAVHQVPIIYDFLKQSPS-------DLSSEDVFQEITKK 436 (438)
Q Consensus 400 d~~~d~~i~~~~~i~~fl~Q~~~-------e~~~~~~~~~~~~~ 436 (438)
+++.+..++++++|++||+||.+ .+..|.++++++..
T Consensus 404 s~~dk~~v~rar~l~~fl~Qpf~~~e~ftg~~g~~v~l~~t~~~ 447 (480)
T CHL00060 404 SEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRG 447 (480)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEHHHHHHH
T ss_conf 98899999999999999658522345415999538609999999
No 34
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=0 Score=830.63 Aligned_cols=398 Identities=27% Similarity=0.393 Sum_probs=370.3
Q ss_pred EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECC
Q ss_conf 1201289999525899982688887351899956996079999974199799998048557467888997288-555246
Q gi|254780684|r 20 VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPS 98 (438)
Q Consensus 20 ~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG 98 (438)
...||+|++|.|+++++++. .+++||+|.|+..+...+|||++|+++++.+|+|+++.||++|++|.++|+ +++++|
T Consensus 2 ~k~yg~V~~I~GplI~v~~~--~~~~gElv~I~~~~~~~~gEVI~~~~d~v~iqvfe~T~Gi~~G~~V~~tG~~l~V~vg 79 (432)
T PRK02118 2 QKIYTKITSIKGNLITVEAE--GVGYGELATVERKGRSSLASVLKLDGDKVTLQVFGGTSGISTGDEVVFLGRPMQVTFS 79 (432)
T ss_pred CCCCCEEEEEECCEEEEEEC--CCCCCCEEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 72214699998838999978--8987878999849977999999981998999984698789999999968997678828
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 66886543077630478877755530121125433300013311001112458752002235850375266788999999
Q gi|254780684|r 99 ACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178 (438)
Q Consensus 99 ~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll 178 (438)
++|||||+|++|+|||+++++. .+ .++++++++||++|.+++++|+|||++||+|+||++|||+||||++|+|||+|+
T Consensus 80 ~~lLGRV~DglGrPiDggp~~~-~~-~~~i~~~~inP~~R~~p~e~l~TGI~aID~l~~l~rGQKi~IFsgsG~gks~L~ 157 (432)
T PRK02118 80 DNLLGRRFNGTGKPIDGGPELE-GE-PIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVKSQKIPIFSSSGEPYNALL 157 (432)
T ss_pred HHHCCCEECCCCCCCCCCCCCC-CC-EEECCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 6543786447676158998788-98-861369998964206887677889678542367405856987447999763999
Q ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEE
Q ss_conf 998740789838993124652238899998642-77553289841577880344444456777888864-2679889997
Q gi|254780684|r 179 SMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFS-SKGDNVLLIL 256 (438)
Q Consensus 179 ~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr-~~G~~Vll~~ 256 (438)
+||++++++|+|||++||||+||+.+|++++++ ++|+|||+|+||||+||++|+++||+|+|+||||| |||+|||+++
T Consensus 158 ~~Ia~~a~~dvvV~~~iGer~~e~~~f~~~~~~~~~l~rtvlv~~ts~~p~~~R~~~~~~altiAEyfr~d~G~~VLli~ 237 (432)
T PRK02118 158 ARIALQAEADIIILGGMGLTFDDYLFFKDEFEKAGALDRTVMFVHTAVDPPVECLLVPDMALAVAEKFAVEEGKKVLVLL 237 (432)
T ss_pred HHHHHHCCCCEEEEECCEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99988538998964033244125899999875068777079983477789899877888888899999874597299997
Q ss_pred ECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEE
Q ss_conf 09899999987665404778432366324554200444443113678852355433342167642027899986126089
Q gi|254780684|r 257 DSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHI 336 (438)
Q Consensus 257 Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i 336 (438)
|||||||+|+||||+++||||+++|||||+|+.||+||||||+..+ +||||+||+|++|+||+||||||+++|||||||
T Consensus 238 DdlTr~A~A~REIs~~~ge~P~r~GYP~~l~s~La~l~ERAg~~~~-~GSIT~i~~v~~p~dD~t~Pi~d~t~~ItdGqI 316 (432)
T PRK02118 238 TDMTNFADALKEISITMDQIPSNRGYPGSLYSDLAKRYEKAVDFAD-GGSITIIAVTTMPGDDITHPVPDNTGYITEGQF 316 (432)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-CEEEEEEEEEECCCCCCCCCHHHHHHHHHCCEE
T ss_conf 6678877788789875489998778695399999999983468999-802689999975787777756889999857768
Q ss_pred EEEHHHHHCCCCCCCCCCCCCCCCCHHCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 870427758971311445640002212089----9999999999999999999999998523446999899999999999
Q gi|254780684|r 337 VLNRSLAEEGRYPPVDPLASVSRLADKAWS----ADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPI 412 (438)
Q Consensus 337 ~L~r~la~~g~~Paid~~~S~SR~~~~~~~----~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~ 412 (438)
||||+ +|||+.|+||+|+++.+ ++|.++++++++.|+.|++.++++.+|.+ +++...+.++++.+
T Consensus 317 vLsr~--------~id~l~SlSRl~~~~ig~~tr~dh~~~~~~l~~~ya~~~~~~~~~~~~~~---ls~~d~~~l~f~~~ 385 (432)
T PRK02118 317 YLKRG--------RIDPFGSLSRLKQLVIGKKTREDHGDLMNAMIRLYADSRKAKEKMAMGFK---LSNWDEKLLAFSEL 385 (432)
T ss_pred EEECC--------CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_conf 85068--------75764437777656565424999999999999999865579999999764---59878999999999
Q ss_pred HHH-HHCCCCCCCCC-HHHHHHHHH
Q ss_conf 999-83599888999-768999998
Q gi|254780684|r 413 IYD-FLKQSPSDLSS-EDVFQEITK 435 (438)
Q Consensus 413 i~~-fl~Q~~~e~~~-~~~~~~~~~ 435 (438)
+++ |+.|+. ..+ .+++.-.|.
T Consensus 386 fe~~f~~~~~--~~~~~~~ld~~w~ 408 (432)
T PRK02118 386 FESRLMDLEV--NIPLEEALDLGWK 408 (432)
T ss_pred HHHHHHCCCC--CCCHHHHHHHHHH
T ss_conf 9999735789--9658999999999
No 35
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=0 Score=825.14 Aligned_cols=325 Identities=50% Similarity=0.834 Sum_probs=317.7
Q ss_pred CCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 85552466688654307763047887775553012112543330001331100111245875200223585037526678
Q gi|254780684|r 92 RFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSG 171 (438)
Q Consensus 92 ~~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~G 171 (438)
++++|||++|||||+|++|+||||++++... .++|++++||||++|++++|||+||||+||+|+|||||||+||||++|
T Consensus 1 Pl~vpVg~~lLGRVid~~G~PiDg~~~i~~~-~~~pi~~~ap~~~~R~~v~e~l~TGI~~ID~l~pigrGQR~~Ifg~~g 79 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKE-VRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSG 79 (326)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCC
T ss_conf 9653557665174767883415799999998-615256899580330788875115770420026624798787436999
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999999998740789838993124652238899998642-775532898415778803444444567778888642679
Q gi|254780684|r 172 IGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGD 250 (438)
Q Consensus 172 vGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~ 250 (438)
+|||+|++||++++++|+|||++||||+||++||++++++ ++|+||++|++|||+||.+|+++||+|+|+||||||||+
T Consensus 80 ~GKt~Ll~~i~~~~~~~v~V~~~IGer~rev~e~~~~~~~~~~l~~tvvv~atad~~~~~r~~a~~~a~~~AEyfrd~G~ 159 (326)
T cd01136 80 VGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGK 159 (326)
T ss_pred CCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98466787686414677599996053388999999986245653222899606889989999988877777889997587
Q ss_pred CEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 88999709899999987665404778432366324554200444443113678852355433342167642027899986
Q gi|254780684|r 251 NVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRS 330 (438)
Q Consensus 251 ~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~ 330 (438)
|||++|||+||||+|+||||+++||||+++|||||+|+.|++|+||||+. .+||||+||||++++||++|||+|+++|
T Consensus 160 dVL~~~Dsltr~A~A~rEisl~~g~~P~~~gyp~~~f~~~~~l~ERag~~--~~GSIT~i~~v~~~~dd~tdpi~~~~~~ 237 (326)
T cd01136 160 DVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNS--DKGSITAFYTVLVEGDDLNEPIADAVRS 237 (326)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCEEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 33787524689999999988864899875667766888878988864179--9985244457870598878862788987
Q ss_pred HCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 12608987042775897131144564000221208999999999999999999999999985234469998999999999
Q gi|254780684|r 331 ILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQV 410 (438)
Q Consensus 331 i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~ 410 (438)
||||||+|||+||++|+||||||+.|+||+|+++++++|++++.++|++|++|+|+||++++|+|..|+|+++|++++++
T Consensus 238 i~Dg~ivLsr~La~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~g~d~~~d~~i~~~ 317 (326)
T cd01136 238 ILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKKGSDPEVDEAIKLL 317 (326)
T ss_pred HCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 54738998588996799997488627533660006799999999999999989999999985497679898999999989
Q ss_pred HHHHHHHCC
Q ss_conf 999998359
Q gi|254780684|r 411 PIIYDFLKQ 419 (438)
Q Consensus 411 ~~i~~fl~Q 419 (438)
++|++||+|
T Consensus 318 ~~i~~fL~Q 326 (326)
T cd01136 318 PKIEAFLKQ 326 (326)
T ss_pred HHHHHHHCC
T ss_conf 999998586
No 36
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=0 Score=798.59 Aligned_cols=397 Identities=22% Similarity=0.273 Sum_probs=369.0
Q ss_pred EEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHHH
Q ss_conf 289999525899982688887351899956996079999974199799998048557467888997288-5552466688
Q gi|254780684|r 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACWC 102 (438)
Q Consensus 24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~lL 102 (438)
=+|.+|.+++++|.|+. .+..||++.|+++ ..+.|.|++++++.+.++.+++...|+.|+.|.+||+ +.+|||++||
T Consensus 3 pkV~sV~DgIa~V~GL~-n~~~~El~~f~~~-~~v~g~~lnleed~vg~vi~g~~~~i~eGd~V~~Tg~i~~VpVG~~lL 80 (507)
T PRK07165 3 PKIKSIFDYIVEVKGEF-DYQQQQVFTLKNN-PNVKLFVISATEDTAYLLINNEKAKIKIGDEIIELNNENKVLTSKEYF 80 (507)
T ss_pred CEEEEEECEEEEEECCH-HHCCCCEEEECCC-CCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCC
T ss_conf 70899814489996770-2244866996489-962899972553617999987987704899998459857887576644
Q ss_pred HHHHHHHHHHCCCCCCCCCC----CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH-
Q ss_conf 65430776304788777555----3012112543330001331100111245875200223585037526678899999-
Q gi|254780684|r 103 GRVINALGKPIDGDDSLGKG----DLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTL- 177 (438)
Q Consensus 103 GRViD~lG~PlDg~~~l~~~----~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~L- 177 (438)
|||+|++|+|||+.+..... ....|+++.||++++|++++|||+|||++||+|+|||||||++|||++|+|||++
T Consensus 81 GRVVD~LG~pidp~~~~~~~~~~~~~~~pie~~Apgi~~R~~V~ePLqTGIkaID~miPIGRGQRELIiGDrqTGKTaIA 160 (507)
T PRK07165 81 GKIIDIDGNIIYPKAANPLKSEKAYQTSSAFNLAHGLMTVQTLNEQLYTGIVAIDLLIPIGKGQRELIIGDRQTGKTHIA 160 (507)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 63688999867898988877654333477455799852367678613434678761355567616777357887788999
Q ss_pred HHHHH-HHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99987-40789838993124652238899998642-77553289841577880344444456777888864267988999
Q gi|254780684|r 178 LSMFA-RSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLI 255 (438)
Q Consensus 178 l~~i~-~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~ 255 (438)
+.+|. |.....+|||++||+|.+++++|++.+++ ++|++|+||++++|+ |.+||+|||+|||+||||+ +|+|||++
T Consensus 161 ldtIiNQk~~~V~cIYVAIGQK~s~Va~iv~~L~~~gAm~yTiVV~A~sd~-p~~qylAPy~g~aiAEyf~-~~~dvLii 238 (507)
T PRK07165 161 LNTIINQKNRNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTS-SYEQYLAPYVAMAHAENIS-YNDDVLIV 238 (507)
T ss_pred HHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHEEEEECCCCC-CHHHHHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 999984546895899998310177999999999877975652576315778-2777778888887889886-46856999
Q ss_pred EECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf 70989999998766540477843236632455420044444311367885235543334216764202789998612608
Q gi|254780684|r 256 LDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGH 335 (438)
Q Consensus 256 ~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~ 335 (438)
|||||+||+|||||||+++|||+|+|||||+||.||||+||||+.+ ++||||++|+++|+++|+|+|||||++||||||
T Consensus 239 yDDLTkhA~AyReisLll~rPPGReayPgdvFy~hsrLLERa~kl~-g~gSiTaLPIieT~~gDisayIpTNviSITDGQ 317 (507)
T PRK07165 239 FDDLTKHANIYREIALLTNKPVGKEAFPGDIFFAHSKLLERAGKFK-NRKSITALPILQTVDNDITSLISSNIISITDGQ 317 (507)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEEEEEECCCCCCCCCCCCEEEECCCE
T ss_conf 6476899999998898727999977899605766168888876126-996157601787027862243566447741762
Q ss_pred EEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98704277589713114456400022120899999999999999999999999998523446999899999999999999
Q gi|254780684|r 336 IVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYD 415 (438)
Q Consensus 336 i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~ 415 (438)
||||++|+++|++||||++.||||+++++|.+.++++++.+|..|++|+|++.+.+||. ++|+++...+.+++++.+
T Consensus 318 I~l~~~Lf~~G~rPAInvglSVSRvG~~aQ~k~~k~vag~l~l~~aqy~el~~fa~f~s---dld~~t~~~l~rG~r~~e 394 (507)
T PRK07165 318 IVTSSELFAQGKLPAIDIDLSVSRTGSSVQSKNIAKIAKEISKIYRAYKRQLKLSSLDY---DLNKETSDLLSKGKMIEK 394 (507)
T ss_pred EEECHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHH
T ss_conf 88517677469886523570065157688899999986365678999999999986545---418999999973289999
Q ss_pred HHCCCCCCCCCHH
Q ss_conf 8359988899976
Q gi|254780684|r 416 FLKQSPSDLSSED 428 (438)
Q Consensus 416 fl~Q~~~e~~~~~ 428 (438)
+|+|+.+.+.+.+
T Consensus 395 llkQ~~~~p~~~~ 407 (507)
T PRK07165 395 LFIQKGFSLYSYR 407 (507)
T ss_pred HHCCCCCCCCCHH
T ss_conf 8667788986899
No 37
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=786.31 Aligned_cols=415 Identities=27% Similarity=0.390 Sum_probs=392.3
Q ss_pred HHHHHHHHHHCCCC-EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99999997413342-12012899995258999826888873518999569960799999741997999980485574678
Q gi|254780684|r 6 ETLAQLAEDYSKNL-VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLG 84 (438)
Q Consensus 6 ~~l~~~~~~~~~~l-~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G 84 (438)
+-+++.++.++... ..+.|+|.+|.++++++.|+. .+..||+++|+ +.+.|.+++++++.+.+.++|+...|+.|
T Consensus 10 ~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~-~~~~~E~~ef~---~~v~G~alnle~d~VG~vi~g~~~~i~eG 85 (504)
T COG0056 10 SLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLE-NVMAGELVEFP---GGVKGMALNLEEDSVGAVILGDYSDIKEG 85 (504)
T ss_pred HHHHHHHHHCCHHHHHHCCCEEEEEECCEEEEECCC-HHHCCCEEEEC---CCCEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 999999971253443211644999725469994474-35328459916---99379998503242469996697664578
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
+.|.+||+ +.+|+|++|||||+|++|+|+||+|++... ...|++..+|+.++|++++|||+|||++||+|+|||||||
T Consensus 86 ~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~~~-~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQR 164 (504)
T COG0056 86 DEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDAT-KTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQR 164 (504)
T ss_pred CEEEEECCEEEEECCHHHCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf 678850756887635665140566889826898975423-3573302078503044238334420577764056578833
Q ss_pred EEEECCCCCCHHHHH--HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 375266788999999--9987407898389931246522388999986427-7553289841577880344444456777
Q gi|254780684|r 164 IGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll--~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
.+|+|++++|||.++ ++|+|..+...|||++||++...++..++.+.+. +|++|+||++++++|+.++|++||+|||
T Consensus 165 ELIIGDRQTGKTaIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAm~yTiVV~AsASd~a~lqYLaPy~g~a 244 (504)
T COG0056 165 ELIIGDRQTGKTAIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCA 244 (504)
T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 78751576783110278898355689479999815437789999999997597513399981477623555530225558
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCC--CCCCEEEEEEEEECCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367--8852355433342167
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVLVDGD 318 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~--~~GSiT~~~~v~~~~d 318 (438)
+|||||++|+|||++|||||+||.|||||||++++||||++||||+||.|+||+|||+++++ ++||||++|++.|.++
T Consensus 245 ~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETqag 324 (504)
T COG0056 245 MAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAG 324 (504)
T ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC
T ss_conf 89999865974899960741889999999998369998657888640011799999886202458872475116886168
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64202789998612608987042775897131144564000221208999999999999999999999999985234469
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPG 398 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g 398 (438)
|++.+||+|++|||||||||+.+||++|++||||+..||||+++++|.+.++++++.+|..|++|+|++.+.+|+. +
T Consensus 325 DvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~kamkkvag~lrl~laqYrel~afsqf~s---d 401 (504)
T COG0056 325 DVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIKAMKKVAGSLRLILAQYRELEAFSQFGS---D 401 (504)
T ss_pred CEEEECCCCEEEECCCCEEEEHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_conf 6623403545884077078506466468885325784265165188999999998789999999998999875400---2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 998999999999999998359988899976
Q gi|254780684|r 399 VDLILDKAVHQVPIIYDFLKQSPSDLSSED 428 (438)
Q Consensus 399 ~d~~~d~~i~~~~~i~~fl~Q~~~e~~~~~ 428 (438)
+|+.+.+.++++.++.+.|+|+.+.+.+.+
T Consensus 402 Ld~~T~~~l~~G~r~~ellkQ~~~~p~sv~ 431 (504)
T COG0056 402 LDKATRKQLERGKRLTELLKQPQYSPLSVE 431 (504)
T ss_pred HCHHHHHHHHCCHHHHHHHCCCCCCCCCHH
T ss_conf 179899999713799999667788875388
No 38
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=0 Score=759.27 Aligned_cols=412 Identities=25% Similarity=0.332 Sum_probs=370.3
Q ss_pred EEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHH
Q ss_conf 01289999525899982688887351899956996079999974199799998048557467888997288-55524666
Q gi|254780684|r 22 QGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSAC 100 (438)
Q Consensus 22 ~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~ 100 (438)
..|+|.+|.|+++.++|+ +.+.++|+|.+ ++..+.||||+++++++.+|+|++|.||++|++|..||+ +++++|++
T Consensus 3 ~~G~I~~I~GPlV~~e~~-~~~~~~EvV~V--G~~~L~GEVI~i~gd~a~iQVyE~T~Gl~~G~~V~~TG~pLsV~LGpg 79 (585)
T PRK04192 3 TKGKIVRVSGPLVVAEGM-GGARMYEVVKV--GEEGLIGEIIRVRGDEASIQVYEETSGIKPGEPVEFTGEPLSVELGPG 79 (585)
T ss_pred CCCEEEEEECCEEEEEEC-CCCCCCCEEEE--CCCCEEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCEEEEECHH
T ss_conf 673699998888999527-88864667998--898557999999499899996668889999898884799449886762
Q ss_pred HHHHHHHHHHHHCCCCC--------------CCCC------------------C--------------------------
Q ss_conf 88654307763047887--------------7755------------------5--------------------------
Q gi|254780684|r 101 WCGRVINALGKPIDGDD--------------SLGK------------------G-------------------------- 122 (438)
Q Consensus 101 lLGRViD~lG~PlDg~~--------------~l~~------------------~-------------------------- 122 (438)
|||||+||+|||||+.+ ++.. +
T Consensus 80 LLGrIfDGiqrPLd~i~~~~g~fi~rG~~~~~Ldr~~~w~f~P~~~~Gd~v~~Gdilg~V~Et~~i~H~imvPp~~~g~v 159 (585)
T PRK04192 80 LLGSIYDGIQRPLDELAEKSGDFLKRGVYVPALDREKKWHFKPTVKVGDKVVAGDVLGTVQETGSIEHKIMVPPGVSGTI 159 (585)
T ss_pred HHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEE
T ss_conf 55262475778633455432665447887888774444531111355874157865788504665334110698887338
Q ss_pred ------------------------------CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf ------------------------------30121125433300013311001112458752002235850375266788
Q gi|254780684|r 123 ------------------------------DLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 123 ------------------------------~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
-++||+.. |.+..+|.++++||.||+|+||+|+||+|||+.+|||++|+
T Consensus 160 ~~i~~~G~ytv~d~ia~v~~~~G~~~~~~m~q~WPVR~-prP~~~r~~p~~PL~TG~RvID~lfpi~rGgt~~IpGgfG~ 238 (585)
T PRK04192 160 KEIASEGDYTVDDTIAVVEDEDGKGKELTMMQKWPVRR-PRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGS 238 (585)
T ss_pred EEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCC-CCCHHHCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCC
T ss_conf 99705885043016999862678743433110276668-89623305866541037333002332026862321266666
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC--------CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998740789838993124652238899998642--------775532898415778803444444567778888
Q gi|254780684|r 173 GKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG--------DNLKKSVVVVATSDESPILRKMAPLTAVTIAEY 244 (438)
Q Consensus 173 GKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~--------~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEy 244 (438)
|||+|++||+|++++|++||++|||||+|+.||++++.+ +.|+|||+|+||||+|+++|..++|+|+|+|||
T Consensus 239 GKTvl~~~lak~s~aDivVyvgcGERgnEm~evl~eFpel~Dp~tG~~lm~RTVliaNTSnmPvaaReaSiytgiTiAEY 318 (585)
T PRK04192 239 GKTVTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPELKDPKTGRPLMERTVLIANTSNMPVAAREASIYTGITIAEY 318 (585)
T ss_pred CHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 64667999974268998999973254086999999877603754670120308999999998578876515678889999
Q ss_pred HHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCC---CCCCCCEEEEEEEEECCCCCC
Q ss_conf 64267988999709899999987665404778432366324554200444443113---678852355433342167642
Q gi|254780684|r 245 FSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS---EKEKGNITAVISVLVDGDNHN 321 (438)
Q Consensus 245 fr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~---~~~~GSiT~~~~v~~~~dd~~ 321 (438)
|||||+||||++||+||||+|+||||++++|+|+++|||+|+++.|+.||||||+. .+..||||.+.+|+++|+||+
T Consensus 319 fRDmG~~VllmaDStSRwAeAlREIS~rleE~Pg~eGYPaYL~SrLA~fYERAGrV~~~~~~~GSvT~igaVSppGgDfs 398 (585)
T PRK04192 319 YRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGSEGSVTIIGAVSPPGGDFS 398 (585)
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCEEEEEEECCCCCCCC
T ss_conf 99769708999756689999988987864369853467823898999998742455505899762799888658998867
Q ss_pred CHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 027899986126089870427758971311445640002212-------0899999999999999999999999998523
Q gi|254780684|r 322 DPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADK-------AWSADEKKLVSSLTHLIHRFEETRDIRLIGG 394 (438)
Q Consensus 322 ~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~-------~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~ 394 (438)
||+++++..++..+..||++||+++|||||||+.|.|++.+. -+++++.++..+++.+|++..++++++++.+
T Consensus 399 ePVT~~Tl~~v~~fw~Ld~~lA~~rhfPainwl~SyS~y~~~~~~~~~~~~~~~~~~~r~~~~~iL~~e~~l~eiv~lvG 478 (585)
T PRK04192 399 EPVTQNTLRIVKVFWALDADLAYRRHYPAINWLTSYSLYLDDVADWWEENVSPDWRELRDEAMSLLQREAELQEIVRLVG 478 (585)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 73578889888788751376775566886670243677888899999874181599999999999872689999998647
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHCCCCCCC-CCHHHHHHHHHHCC
Q ss_conf 446999899999999999999-835998889-99768999998709
Q gi|254780684|r 395 YRPGVDLILDKAVHQVPIIYD-FLKQSPSDL-SSEDVFQEITKKLQ 438 (438)
Q Consensus 395 y~~g~d~~~d~~i~~~~~i~~-fl~Q~~~e~-~~~~~~~~~~~~l~ 438 (438)
. .++..+.+..+...+.|++ ||+||.++. ..+|+++++..+|+
T Consensus 479 ~-d~l~~~~~l~l~~a~~i~~~fLqQnaf~~~D~~~~~~kq~~ml~ 523 (585)
T PRK04192 479 E-DALSEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLK 523 (585)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7-55898897899999886550301478995024899899999999
No 39
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=0 Score=730.63 Aligned_cols=267 Identities=33% Similarity=0.553 Sum_probs=258.2
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 55524666886543077630478877755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 93 FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 93 ~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
++||||++|||||+|++|+||||++++... .++|+++++|||++|+++++||+||||+||+|+|||||||+|||||+|+
T Consensus 2 l~VpVG~~lLGRVvd~lG~PiDg~~~i~~~-~~~~i~~~ap~p~~R~~v~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 2 LKVPVSEDMLGRIFNGSGKPIDGGPEILAE-EYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCC-CEEECCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCC
T ss_conf 698747773374745883312799999998-6402458997804406778632258535405467236766332057886
Q ss_pred CHHHHHHHHHHHC------CCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999987407------898389931246522388999986427-755328984157788034444445677788886
Q gi|254780684|r 173 GKSTLLSMFARSD------CFDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLTAVTIAEYF 245 (438)
Q Consensus 173 GKt~Ll~~i~~~~------~~dv~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyf 245 (438)
|||+|+.||++|+ ++|+|||++||||+||+++|++++++. +|+|||+|++|||+||.+|+++||+|||+||||
T Consensus 81 GKs~L~~~i~~~~~~~~~~~~~v~V~~~IGer~rev~e~~~~l~~~~~l~~tvvv~ata~~~p~~r~~a~~~a~aiAEyF 160 (276)
T cd01135 81 PHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYL 160 (276)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 36789999999877513688735999615553257999999987166512101466348897688878888877899998
Q ss_pred H-HCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHH
Q ss_conf 4-267988999709899999987665404778432366324554200444443113678852355433342167642027
Q gi|254780684|r 246 S-SKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPI 324 (438)
Q Consensus 246 r-~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi 324 (438)
| +||||||++|||+||||+|+||||+++||||+++|||||+||.|++|+||||+..+++||||+||+|++++||++|||
T Consensus 161 r~~~Gk~VLl~~D~ltr~A~A~REisl~~g~~P~~~gYp~~vf~~l~~l~ERag~~~~~~GSITa~~~v~~~~dD~~~pi 240 (276)
T cd01135 161 AYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPI 240 (276)
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCH
T ss_conf 87369977999456889999999999864899987888850998867888722467999801899989944798867766
Q ss_pred HHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 899986126089870427758971311445640002
Q gi|254780684|r 325 ADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL 360 (438)
Q Consensus 325 ~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~ 360 (438)
+|+++|||||||+|||+||++|||||||++.|+||+
T Consensus 241 ~~~~~si~DG~i~Lsr~la~~G~~PAId~~~S~SRv 276 (276)
T cd01135 241 PDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred HHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf 777765604599997999967999970875576679
No 40
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=0 Score=701.46 Aligned_cols=268 Identities=28% Similarity=0.439 Sum_probs=254.0
Q ss_pred CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 55524666886543077630478877755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 93 FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 93 ~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
.+||||++|||||+|++|+||||++++... .++|+++++|||++|++++|+|+||||+||+|+|||||||+||||++|+
T Consensus 2 ~~VpVg~~lLGRVid~~G~PiDg~~~~~~~-~~~pi~~~~p~p~~R~~i~e~l~TGI~aID~l~pig~GQr~~If~~~g~ 80 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETK-ERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQT 80 (274)
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCC
T ss_conf 686747463673756883302799999998-5020258895852126878611038345413466247867515588875
Q ss_pred CHHHHH-HHHH-HHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999-9987-40789838993124652238899998642-77553289841577880344444456777888864267
Q gi|254780684|r 173 GKSTLL-SMFA-RSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKG 249 (438)
Q Consensus 173 GKt~Ll-~~i~-~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G 249 (438)
|||+|+ .+|. ++.+.++|||++||||+||+.+|++++++ ++++|||+|++|+|+||.+|+++||+|+|+||||||||
T Consensus 81 GKt~l~~~~i~~~~~~~~~~V~~~IGer~rEv~ef~~~~~~~~~l~~tv~v~~t~~~p~~~r~~a~~~a~~iAEyfrd~G 160 (274)
T cd01132 81 GKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNG 160 (274)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 57889999999741369659999732452269999998760576201147740477875877765441222678998779
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCC--CCCCEEEEEEEEECCCCCCCHHHHH
Q ss_conf 98899970989999998766540477843236632455420044444311367--8852355433342167642027899
Q gi|254780684|r 250 DNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVLVDGDNHNDPIADS 327 (438)
Q Consensus 250 ~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~--~~GSiT~~~~v~~~~dd~~~pi~~~ 327 (438)
|||||++|||||||+||||||+++||||+++|||||+|+.||+|+||||+..+ ++||||+||+|++++||++|||+|+
T Consensus 161 k~VLll~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~~~~l~ERag~~~~~~~~GSiT~~~~v~~~~dD~t~pi~d~ 240 (274)
T cd01132 161 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDVSAYIPTN 240 (274)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHH
T ss_conf 94799997889999999999997279997777796278776899986321569998814217789973587778851666
Q ss_pred HHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9861260898704277589713114456400022
Q gi|254780684|r 328 VRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLA 361 (438)
Q Consensus 328 ~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~ 361 (438)
++|||||||+|||+||++|||||||++.|+||++
T Consensus 241 ~~~i~dg~ivLsr~la~~g~yPAIdvl~S~SRvg 274 (274)
T cd01132 241 VISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred HHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 7222045999979999679999808775767789
No 41
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=0 Score=689.18 Aligned_cols=268 Identities=34% Similarity=0.564 Sum_probs=256.4
Q ss_pred CCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 85552466688654307763047887775553012112543330001331100111245875200223585037526678
Q gi|254780684|r 92 RFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSG 171 (438)
Q Consensus 92 ~~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~G 171 (438)
+++||||++|||||+|++|+||||++++... .++|+++++|||++|++++|||+||||+||+|+|||||||++|||++|
T Consensus 1 Pl~ipVg~~lLGRVvd~~G~PiDg~~~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIr~ID~l~pigkGQR~~I~~~~g 79 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTK-KTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAG 79 (274)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCC
T ss_conf 9657768042165636896524899999998-604256899684560787873115866664446614785778757999
Q ss_pred CCHHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999998740---789838993124652238899998642-775532898415778803444444567778888642
Q gi|254780684|r 172 IGKSTLLSMFARS---DCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSS 247 (438)
Q Consensus 172 vGKt~Ll~~i~~~---~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~ 247 (438)
+|||+|+.+|+++ .++++|||++||||+||+++|++++++ ++|++|++|++|+|+||.+|+++||+|||+||||||
T Consensus 80 ~GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~~~~~l~~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd 159 (274)
T cd01133 80 VGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRD 159 (274)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98236899999999850898799998425548899999972035665337999834555405789999999999999997
Q ss_pred -CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHH
Q ss_conf -6798899970989999998766540477843236632455420044444311367885235543334216764202789
Q gi|254780684|r 248 -KGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIAD 326 (438)
Q Consensus 248 -~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~ 326 (438)
+|+|||++|||+||||+|+||||+++||+|+++|||||+|+.|++|+||+|. .++||||+||||++++||++|||+|
T Consensus 160 ~~G~dVLll~DslTr~A~A~reis~~~g~~P~~~gyp~~l~~~~~~l~ER~~~--~~~GSiT~i~tv~~~~dD~~dpi~~ 237 (274)
T cd01133 160 EEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITS--TKKGSITSVQAVYVPADDLTDPAPA 237 (274)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEEEEEECCCCCCCCCHHH
T ss_conf 28985999971868999999988886289998666683078899999997448--8898746888997458887661778
Q ss_pred HHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 998612608987042775897131144564000221
Q gi|254780684|r 327 SVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD 362 (438)
Q Consensus 327 ~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~ 362 (438)
++++||||||+|||+||++|+|||||++.|+||+|+
T Consensus 238 ~~~~i~dG~ivLsr~la~~g~yPAIdv~~S~SR~m~ 273 (274)
T cd01133 238 TTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred HHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 887740729998588996799996377653101258
No 42
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=0 Score=669.39 Aligned_cols=365 Identities=25% Similarity=0.332 Sum_probs=328.7
Q ss_pred EEEEEEEECCEEEEECC--CCCCCCCCEEEEECC-CCCEEEEEEEECCC-EEEEEECCCCCCCCCCCEEEECCC-CEEEC
Q ss_conf 12899995258999826--888873518999569-96079999974199-799998048557467888997288-55524
Q gi|254780684|r 23 GGYISSITSVYYTVTCL--SQYVCLGDFVVHQGK-NSDNLGQVIRINLD-IVYICPVGIGEEISLGDLVFHWGR-FRISP 97 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl--~~~v~iGelv~i~~~-~~~v~geVi~~~~~-~~~l~~~~~~~gI~~G~~V~~~g~-~~i~v 97 (438)
.|.|.+++|.+.+.--- .|.+.++.++.|.-. ..-.-|.++++++| .+.+.+|++..+|..|+.|.+||+ +.+||
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GlalNLe~D~~VGvVllg~~~~I~eG~~V~rTG~il~vPV 119 (574)
T PTZ00185 40 IGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLYIPV 119 (574)
T ss_pred HEEEEECCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHEECCCCCCCEEEEEECCCCCCCCCCEEEEECCEEEEEC
T ss_conf 10245306436886207999873653689999664122423024135678134999668453247888875154788752
Q ss_pred CHHHHHHHHHHHHHHCCCC------CCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6668865430776304788------7775553012112543330001331100111245875200223585037526678
Q gi|254780684|r 98 SACWCGRVINALGKPIDGD------DSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSG 171 (438)
Q Consensus 98 G~~lLGRViD~lG~PlDg~------~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~G 171 (438)
|+++||||+|++|+|||.+ +++.......|++.++|+.++|+|+++||.|||++||+|+|||||||++|+|+++
T Consensus 120 G~~~LGRVVdpLG~Pi~~~~~~~~r~~i~~~~~~~~iE~~APgI~~R~pV~ePl~TGikaIDamIPIGRGQRELIIGDRQ 199 (574)
T PTZ00185 120 GAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQ 199 (574)
T ss_pred CCHHHCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf 70020322256789777764334444320011035323679960105767845565567886436667885203555776
Q ss_pred CCHHHHH-H-HHHHH--------CCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8999999-9-98740--------789838993124652238899998642-77553289841577880344444456777
Q gi|254780684|r 172 IGKSTLL-S-MFARS--------DCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 172 vGKt~Ll-~-~i~~~--------~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
+|||.++ . +|+|. .+..+|||++||++...++.+++.+.+ .+|++|++|++++++|+.++|+|||+||+
T Consensus 200 TGKTaIAiDTIINQk~~n~~~~k~~~V~CIYVAIGQK~StVA~iv~~L~e~gAm~yTiIVaAtAsd~a~lQYLAPYaG~A 279 (574)
T PTZ00185 200 TGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVT 279 (574)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 55689999999837643446577896699999854128999999999997697203089992477751442321101257
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCC--CCCCCEEEEEEEEECCC
Q ss_conf 8888642679889997098999999876654047784323663245542004444431136--78852355433342167
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE--KEKGNITAVISVLVDGD 318 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~--~~~GSiT~~~~v~~~~d 318 (438)
+||||||+|+|||+++||+|+||.||||+||++.+||+|++||+|+||.|+||+|||++.+ .++||||++|++++.++
T Consensus 280 maEyFm~~G~dvLIVyDDLSKhA~AYRqmSLLLRRPPGREAYPGDVFYlHSRLLERAaKls~~~GgGSiTALPIIETqaG 359 (574)
T PTZ00185 280 MGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSN 359 (574)
T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEECEEEEECCC
T ss_conf 77898856984799965807889999998720689999879887661110178888875244569800464206996078
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 642027899986126089870427758971311445640002212089999999999999999999999
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETR 387 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~ 387 (438)
|++.+||+|++|||||||||+.+|+++|++||||+..||||+++++|.+.++++++.+|..|++|+|+-
T Consensus 360 DvSAYIPTNVISITDGQIfLes~LF~~GiRPAInVGlSVSRVGsaAQ~KAmK~VAG~Lkl~LAQYRElA 428 (574)
T PTZ00185 360 DVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNVAMKAVAGKLKGILAEYRKLA 428 (574)
T ss_pred CEEEEEECCEEEECCCEEEECHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 551010012587027718851767737988541468535416768899999997414458899999986
No 43
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=0 Score=639.73 Aligned_cols=411 Identities=27% Similarity=0.413 Sum_probs=381.2
Q ss_pred EEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCC-CEEEEEEEECCCEEEEEECCCCCCCCCCCE-EEECCC-CEEE
Q ss_conf 1201289999525899982688887351899956996-079999974199799998048557467888-997288-5552
Q gi|254780684|r 20 VVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNS-DNLGQVIRINLDIVYICPVGIGEEISLGDL-VFHWGR-FRIS 96 (438)
Q Consensus 20 ~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~-~v~geVi~~~~~~~~l~~~~~~~gI~~G~~-V~~~g~-~~i~ 96 (438)
..+|-+|+.|.|+++.|++.. .+.+||++.++..++ ...|+|+.++.+.+.+++|+.+.|+...+. |.++|+ +.++
T Consensus 4 ~~~Y~~i~~i~Gplv~ve~~e-g~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~ 82 (463)
T COG1156 4 VKEYTTISEIKGPLIIVEGVE-GASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIP 82 (463)
T ss_pred CCEEEEEEEECCCEEEEECCC-CCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEECCEEEEE
T ss_conf 420234677315449996456-7776437999879987643457531586489999504457788885589948637876
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 46668865430776304788777555301211254333000133110011124587520022358503752667889999
Q gi|254780684|r 97 PSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKST 176 (438)
Q Consensus 97 vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~ 176 (438)
++++||||++|++|+||||+|.+...+ ..++++.|.||..|..+.++++|||++||+|+++.+|||++||++||.+++.
T Consensus 83 vs~dllGRifnG~G~PiDggp~i~~e~-~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~ 161 (463)
T COG1156 83 VSEDLLGRIFNGSGKPIDGGPEIVPED-RLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNE 161 (463)
T ss_pred ECHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 328766544057888478998678775-5335788789156547266765296087643465336546601279984379
Q ss_pred HHHHHHHHCCCCC------EEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HC
Q ss_conf 9999874078983------89931246522388999986427-7553289841577880344444456777888864-26
Q gi|254780684|r 177 LLSMFARSDCFDK------VIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLTAVTIAEYFS-SK 248 (438)
Q Consensus 177 Ll~~i~~~~~~dv------~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr-~~ 248 (438)
|+++|++|+..+. +||+++|-...|...|.+++... ++.|+|++.+.+|+|+++|..+|.+|+|+||||. ++
T Consensus 162 LaaqIarQA~v~~~~e~favVfaamGit~eea~fF~~~fe~tGal~r~vlflnlA~dp~vEri~tPr~aLt~AEylA~e~ 241 (463)
T COG1156 162 LAAQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEK 241 (463)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCC
T ss_conf 99999975366787543058874047318999999988876224666676542367874347613168999999985257
Q ss_pred CCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 79889997098999999876654047784323663245542004444431136788523554333421676420278999
Q gi|254780684|r 249 GDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSV 328 (438)
Q Consensus 249 G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~ 328 (438)
++|||+++.|||+||.|+||||.+.+|.|+++|||+|+|++++.+|||||+..+.+||||.+|+.++|+||+||||||++
T Consensus 242 ~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqipIlTMP~DDITHPIPDlT 321 (463)
T COG1156 242 DMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIPILTMPGDDITHPIPDLT 321 (463)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCEECCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 86699997014678999999876414377767886166778899987650330578726987765269987678777655
Q ss_pred HHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 861260898704277589713114456400022120899-----999999999999999999999998523446999899
Q gi|254780684|r 329 RSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSA-----DEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLIL 403 (438)
Q Consensus 329 ~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~-----~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~ 403 (438)
.+||+|||+|||+++.+|+||+||++.|+||+|++.+++ +|..+++++...|+..++++++..+++... +....
T Consensus 322 GYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~avvge~a-Ls~~D 400 (463)
T COG1156 322 GYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVGEEA-LSERD 400 (463)
T ss_pred CEECCCEEEEEHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCHHH
T ss_conf 53316559997100248867972336127777651447886644107889999999850240899998752443-03357
Q ss_pred HHHHHHHHHHHH-HHCCCCCCCCCHHHHHHH
Q ss_conf 999999999999-835998889997689999
Q gi|254780684|r 404 DKAVHQVPIIYD-FLKQSPSDLSSEDVFQEI 433 (438)
Q Consensus 404 d~~i~~~~~i~~-fl~Q~~~e~~~~~~~~~~ 433 (438)
.+.+++...+++ |.+|..++-.+.+...++
T Consensus 401 ~~~l~F~d~FE~~fi~qg~~enrsieetLdl 431 (463)
T COG1156 401 RKYLKFADLFEQRFIKQGRYENRSIEETLDL 431 (463)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 9999999999999986343247788999887
No 44
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=635.33 Aligned_cols=412 Identities=27% Similarity=0.414 Sum_probs=373.0
Q ss_pred EEEEEEEECCEEEEECCC--CCCCCCCEEEEECCC-CCEEEEEEE-ECCCEEEEEECCCCCCCCCCCEEEECCC-CEEEC
Q ss_conf 128999952589998268--888735189995699-607999997-4199799998048557467888997288-55524
Q gi|254780684|r 23 GGYISSITSVYYTVTCLS--QYVCLGDFVVHQGKN-SDNLGQVIR-INLDIVYICPVGIGEEISLGDLVFHWGR-FRISP 97 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl~--~~v~iGelv~i~~~~-~~v~geVi~-~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~v 97 (438)
.|+|++|.|+++.|+.-. ....|.+...+..+. +.+.-||-. +.++.+....+++++|+.+|..|..||+ +++||
T Consensus 3 ~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPV 82 (468)
T COG0055 3 KGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVPV 82 (468)
T ss_pred CCEEEEEEEEEEEEEECCCCCCCHHHHHHEECCCCCCEEEEEHHHHHCCCEEEEEEECCCCCCCCCCEEECCCCCEEEEC
T ss_conf 75699998217999805866672043452643577525753068773888389999637567103747750799668752
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 6668865430776304788777555-301211254333000133110011124587520022358503752667889999
Q gi|254780684|r 98 SACWCGRVINALGKPIDGDDSLGKG-DLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKST 176 (438)
Q Consensus 98 G~~lLGRViD~lG~PlDg~~~l~~~-~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~ 176 (438)
|++.|||++|.+|+|||..+|+... ..+|++++++|...+...-+|.|+||||+||.|.|+.||.|+|+|||+|||||+
T Consensus 83 G~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKTV 162 (468)
T COG0055 83 GKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTV 162 (468)
T ss_pred CHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCEE
T ss_conf 63221231020477346668887555502012579983554077304433073689984111468644442367756201
Q ss_pred HHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 99998740---78983899312465223889999864277-55328984157788034444445677788886426-798
Q gi|254780684|r 177 LLSMFARS---DCFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSK-GDN 251 (438)
Q Consensus 177 Ll~~i~~~---~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~-G~~ 251 (438)
|+..+.+| ....++||+++|||.||..+++.++.+++ +.+|++|+.++|+||+.|.+.+.+|+|+||||||+ |+|
T Consensus 163 l~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEyfRD~~gqd 242 (468)
T COG0055 163 LIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDEEGQD 242 (468)
T ss_pred EHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCE
T ss_conf 09999999999749868997135321115778999986388773269996057998641455112331999864003875
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89997098999999876654047784323663245542004444431136788523554333421676420278999861
Q gi|254780684|r 252 VLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331 (438)
Q Consensus 252 Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i 331 (438)
|||++|++.||.+|..|+|.++|++|+..||+|.+.+++..|.||.. ++.+||||++++|++|.||+|||.|.++.++
T Consensus 243 VLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIt--stk~GSITSiQavyvPaDDlTDPapattFaH 320 (468)
T COG0055 243 VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERIT--STKKGSITSVQAVYVPADDLTDPAPATTFAH 320 (468)
T ss_pred EEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCCCEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 89984255677623138999845696414567406778888999975--3788866889999861323789525556551
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCC-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 260898704277589713114456400022-1208999999999999999999999999985234469998999999999
Q gi|254780684|r 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLA-DKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQV 410 (438)
Q Consensus 332 ~DG~i~L~r~la~~g~~Paid~~~S~SR~~-~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~ 410 (438)
+|+.++|||++|+.|+||||||+.|.||.+ +.+++++||+++.+.+++|++|+|++|+|.+.+..+ ++++.+..+.++
T Consensus 321 LDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdE-Lseedk~~V~rA 399 (468)
T COG0055 321 LDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDE-LSEEDKLTVARA 399 (468)
T ss_pred CCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHH
T ss_conf 3441356376786688766584434220158641458999999999999999899999999838321-286678999999
Q ss_pred HHHHHHHCCCC-------CCCCCHHHHHHHHHHC
Q ss_conf 99999835998-------8899976899999870
Q gi|254780684|r 411 PIIYDFLKQSP-------SDLSSEDVFQEITKKL 437 (438)
Q Consensus 411 ~~i~~fl~Q~~-------~e~~~~~~~~~~~~~l 437 (438)
++|+.||.|+. ..+..|.++.+++...
T Consensus 400 rki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~f 433 (468)
T COG0055 400 RKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGF 433 (468)
T ss_pred HHHHHHHCCCCHHHHHCCCCCCEEEEHHHHHHHH
T ss_conf 9999985586201210048996164489999999
No 45
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=0 Score=636.10 Aligned_cols=237 Identities=29% Similarity=0.457 Sum_probs=226.1
Q ss_pred CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 30121125433300013311001112458752002235850375266788999999998740789838993124652238
Q gi|254780684|r 123 DLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREV 202 (438)
Q Consensus 123 ~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev 202 (438)
.++||+..+.| ..+|.++++||.||||+||+|+|||||||++|||++|+|||+|++||+|++++|+|||++||||+||+
T Consensus 120 ~q~WPVr~prP-v~er~~~~~PL~TGir~ID~l~Pig~Gqr~~I~g~~g~GKT~l~~~i~k~~~~dv~Vyv~iGeRg~ev 198 (369)
T cd01134 120 VQKWPVRQPRP-VKEKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNSDIVIYVGCGERGNEM 198 (369)
T ss_pred EEECCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHH
T ss_conf 87077566775-11138999862653568874253214764677668776899999999853799889999971141899
Q ss_pred HHHHHHH-------HC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 8999986-------42-775532898415778803444444567778888642679889997098999999876654047
Q gi|254780684|r 203 REFIEDY-------LG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSG 274 (438)
Q Consensus 203 ~efi~~~-------~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~g 274 (438)
.||++++ .+ +.|+|||+|+||||+|+++|+.++|+||||||||||||+||||++||+||||+||||||+++|
T Consensus 199 ~e~l~~f~el~~~~~g~~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~ 278 (369)
T cd01134 199 TEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLE 278 (369)
T ss_pred HHHHHHHHHHCCCCCCCCHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 99999867741333466410203687427779988998889899999999996898879980758999999889988638
Q ss_pred CCCCCCCCCHHHHHHCCHHHHHHHCCC-----CCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCC
Q ss_conf 784323663245542004444431136-----788523554333421676420278999861260898704277589713
Q gi|254780684|r 275 ELPVARGYPTSVFSELPRLLERIGPSE-----KEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYP 349 (438)
Q Consensus 275 e~P~~~gyp~~~~~~~~~l~ERag~~~-----~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~P 349 (438)
|||+++|||||+|+.|++||||||+.. ++.||||+||+|++++||++|||++|+++|||||++|||+||++||||
T Consensus 279 e~P~~egYP~~l~s~l~~l~ERag~~~~~~~~~~~GSiT~~~~V~~~ggD~s~pI~~~~~si~d~~i~L~~~La~~g~~P 358 (369)
T cd01134 279 EMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFP 358 (369)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCEEEEECHHHHHCCCCC
T ss_conf 99876571931998888998721443236899998117789899756988677578888766215889858898679999
Q ss_pred CCCCCCCCCCC
Q ss_conf 11445640002
Q gi|254780684|r 350 PVDPLASVSRL 360 (438)
Q Consensus 350 aid~~~S~SR~ 360 (438)
||||+.|+||+
T Consensus 359 AId~~~S~Sry 369 (369)
T cd01134 359 SINWLISYSKY 369 (369)
T ss_pred CCCCCCCCCCC
T ss_conf 71874366588
No 46
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit; InterPro: IPR005726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the alpha subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) and beta (or B) (IPR005724 from INTERPRO), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=612.79 Aligned_cols=410 Identities=24% Similarity=0.350 Sum_probs=362.3
Q ss_pred EEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 1289999525899982688887351899956996079999974199799998048557467888997288-555246668
Q gi|254780684|r 23 GGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
.|+|.+|.|++|.++|+. .+.+.|+|.+ ++..+.|||+.+.++++++++|++|.||++|++|..||. ++|.+|++|
T Consensus 2 ~G~i~~~~GP~v~A~g~~-~a~My~~v~V--g~~~L~GEi~~~~gd~~~IQVYE~T~G~~Pge~v~~tG~pLsveLGPGl 78 (584)
T TIGR01043 2 KGEIVRVSGPLVVAEGLK-GAQMYEVVKV--GEEGLIGEIIRIEGDKAVIQVYEETSGIKPGEPVERTGAPLSVELGPGL 78 (584)
T ss_pred CCEEEEEECCEEEECCCC-CCCEEEEEEE--CCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCHHCCCCEEEEECCCHH
T ss_conf 853899757887824557-6632433567--0785036899982776899986326888987400028970277435004
Q ss_pred HHHHHHHHHHHCC-------------------------------------------------------------------
Q ss_conf 8654307763047-------------------------------------------------------------------
Q gi|254780684|r 102 CGRVINALGKPID------------------------------------------------------------------- 114 (438)
Q Consensus 102 LGRViD~lG~PlD------------------------------------------------------------------- 114 (438)
|+.++||+.|||+
T Consensus 79 l~~iyDG~QRPL~~l~~~~~~~Fi~RGv~~p~l~~~~~w~F~P~v~~Gd~V~~Gd~~G~V~ET~~i~h~ilvPp~~~gg~ 158 (584)
T TIGR01043 79 LGSIYDGVQRPLDVLKEKTGSDFIERGVDAPGLDRDKKWEFKPTVKEGDKVEGGDIIGVVQETSLIEHKILVPPNVEGGE 158 (584)
T ss_pred HHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCEECCEECCCCEECCCCEEEEECCCCCEEEEEEECCCCCCCE
T ss_conf 76640122463689998620137665851688875345002221226864347615877637650334777357457875
Q ss_pred ---------------------CC-CCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf ---------------------88-77755530121125433300013311001112458752002235850375266788
Q gi|254780684|r 115 ---------------------GD-DSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172 (438)
Q Consensus 115 ---------------------g~-~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~Gv 172 (438)
|. ..+. -.++||++.+- |..++..+..||.||.|++|+|||+.||..-.|.|++|+
T Consensus 159 ~~~~~~G~ftV~d~i~~~~~~G~~~~~~-m~~~WPVR~~R-P~~~K~~P~~PL~tG~R~~Dt~F~~AKGGTAAiPGPFGs 236 (584)
T TIGR01043 159 IVEIAEGDFTVEDTIAVVEKDGEEEEIK-MYQKWPVRKPR-PYKEKLEPEEPLVTGQRILDTLFPIAKGGTAAIPGPFGS 236 (584)
T ss_pred EEEEECCCEEEEEEEEEEECCCCCCEEE-EEEECCCCCCC-CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 7787267314655689982278811024-64407788888-743578889861215034101024246775457878888
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH--C---CC---CCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999874078983899312465223889999864--2---77---5532898415778803444444567778888
Q gi|254780684|r 173 GKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYL--G---DN---LKKSVVVVATSDESPILRKMAPLTAVTIAEY 244 (438)
Q Consensus 173 GKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~--~---~~---l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEy 244 (438)
|||+-.++++|.++++++||.+|||||+|+.|.+++|- . -| |+|||+|+||||+|.+.|..+.|+|+|||||
T Consensus 237 GKTVT~~~LAkws~a~ivvYiGCGERGNEMt~vl~~FP~l~dp~TG~pLm~RT~LiANTSNMPVAAREas~Y~GiTiAEY 316 (584)
T TIGR01043 237 GKTVTQQQLAKWSDADIVVYIGCGERGNEMTEVLEEFPELEDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEY 316 (584)
T ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHCCHHHHH
T ss_conf 50467777754304737999616887525899998487868863531565420533526787534401123211025334
Q ss_pred HHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCC-----CCCCCCEEEEEEEEECCCC
Q ss_conf 64267988999709899999987665404778432366324554200444443113-----6788523554333421676
Q gi|254780684|r 245 FSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS-----EKEKGNITAVISVLVDGDN 319 (438)
Q Consensus 245 fr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~-----~~~~GSiT~~~~v~~~~dd 319 (438)
|||+|+||+|+.||.+|||+|+||||..++|+|+.+|||.|+.+.|+.+|||||+. .++.||||.+.+|.+||+|
T Consensus 317 fRD~GYdv~L~ADSTSRWAEA~ReisgRlEEMPgEEGyPaYLasrLaefYERAG~~~~l~~~~~~gsv~v~gAVSPPGGD 396 (584)
T TIGR01043 317 FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEREGSVTVVGAVSPPGGD 396 (584)
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEEECCCCCCCC
T ss_conf 41168516887247521789998752021027787886246888887766514602231688744789999614775578
Q ss_pred CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 420278999861260898704277589713114456400022120-------8999999999999999999999999985
Q gi|254780684|r 320 HNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKA-------WSADEKKLVSSLTHLIHRFEETRDIRLI 392 (438)
Q Consensus 320 ~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~-------~~~~~~~~~~~~~~~l~~y~~~~~l~~~ 392 (438)
|++|++.|+.-|.--.--||.+||+++|||||||+.|.|-+.+.+ +.+++.+.....-.+|.+..|+++++++
T Consensus 397 fsEPVt~~TlR~vkvFWaLD~~La~~RHfPaInW~~sySlY~d~~~~W~~~Nv~~~w~~~R~~a~~~L~~E~eL~eIV~L 476 (584)
T TIGR01043 397 FSEPVTQNTLRIVKVFWALDAKLAQRRHFPAINWLQSYSLYVDSVQDWWAENVDPDWRELRDEAMDLLQKEAELQEIVQL 476 (584)
T ss_pred CCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78862227447898730011788743789730201145776888999987400277999999999997515567778753
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCC-CCHHHHHHHHHHCC
Q ss_conf 23446999899999999999999-835998889-99768999998709
Q gi|254780684|r 393 GGYRPGVDLILDKAVHQVPIIYD-FLKQSPSDL-SSEDVFQEITKKLQ 438 (438)
Q Consensus 393 g~y~~g~d~~~d~~i~~~~~i~~-fl~Q~~~e~-~~~~~~~~~~~~l~ 438 (438)
.+ ...+....+..+...+.|++ ||+|++++. ..||++++...+|+
T Consensus 477 VG-~d~L~~~~~~~Le~ar~~re~fL~q~Af~~vD~y~~~~kq~~~l~ 523 (584)
T TIGR01043 477 VG-PDALPEKEKLILEVARLIREAFLQQNAFDEVDTYCSPQKQYRILK 523 (584)
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHH
T ss_conf 17-756760245789999999998766520430103588688999999
No 47
>KOG1351 consensus
Probab=100.00 E-value=0 Score=571.39 Aligned_cols=429 Identities=21% Similarity=0.334 Sum_probs=388.5
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCC-CCEEEEEEEECCCEEEEEECCCCCCCCCC-
Q ss_conf 9999997413342120128999952589998268888735189995699-60799999741997999980485574678-
Q gi|254780684|r 7 TLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKN-SDNLGQVIRINLDIVYICPVGIGEEISLG- 84 (438)
Q Consensus 7 ~l~~~~~~~~~~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~-~~v~geVi~~~~~~~~l~~~~~~~gI~~G- 84 (438)
+.....+.|..+....|-+|..|.|+++....+ ....+.|+|.+.-.+ ....|+|+.+.++++.+++|+.++||..-
T Consensus 8 ~~~a~~~~~~~~prl~y~tv~gvngplvild~v-kfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~ 86 (489)
T KOG1351 8 HATAVIENYTTEPRLTYRTVSGVNGPLVILDKV-KFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKK 86 (489)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCEEEEECC-CCCCHHHHEEEECCCCCEECCEEEEECCCEEEEEEECCCCCCCCCC
T ss_conf 788876324567742676531567756997525-6512043067766898711331799608735899950666655442
Q ss_pred CEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 88997288-55524666886543077630478877755530121125433300013311001112458752002235850
Q gi|254780684|r 85 DLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163 (438)
Q Consensus 85 ~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR 163 (438)
..+.+||. ++.||++++||||+|+.|+|||+++++...+ ...+++.|+||+.|-.+.|.++|||.+||.|+.|.||||
T Consensus 87 t~~eftg~~lr~pvsedmlgrifngsgkpid~gp~vl~ed-yldi~gqpinp~~riypeemiqtgis~idvmnsiargqk 165 (489)
T KOG1351 87 TTVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAED-YLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQK 165 (489)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHH-HHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 2688743410365568776544268998268899757177-611479808940001869998727327765667742674
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC---------------CCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCC
Q ss_conf 37526678899999999874078---------------983899312465223889999864277-55328984157788
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDC---------------FDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVATSDES 227 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~---------------~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t~d~~ 227 (438)
++||+.+|.+++.++++|+|++. .-.+|||++|..-...+.|.+++.+.| |.+.+++.+.+++|
T Consensus 166 ipifsaaglphneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~~v~lflnlandp 245 (489)
T KOG1351 166 IPIFSAAGLPHNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDP 245 (489)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 53233378980589999988537111688664446676547760031565888899886687558700057787417897
Q ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCC
Q ss_conf 03444444567778888642-67988999709899999987665404778432366324554200444443113678852
Q gi|254780684|r 228 PILRKMAPLTAVTIAEYFSS-KGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGN 306 (438)
Q Consensus 228 ~~~r~~a~~~a~~iAEyfr~-~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GS 306 (438)
.++|..+|..|++.|||+.+ ++||||+++.||+.||+|+||+|.+.+|.|+|+|||+++|.+++-+|||||+..+++||
T Consensus 246 tieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~gs 325 (489)
T KOG1351 246 TIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGS 325 (489)
T ss_pred CHHHHCCHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCC
T ss_conf 44320240356668999987634738999833077899999977766427886788861002479999873333367885
Q ss_pred EEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCC-----HHHHHHHHHHHHHHH
Q ss_conf 355433342167642027899986126089870427758971311445640002212089-----999999999999999
Q gi|254780684|r 307 ITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWS-----ADEKKLVSSLTHLIH 381 (438)
Q Consensus 307 iT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~-----~~~~~~~~~~~~~l~ 381 (438)
||.||+.++|+||+++||||.+.+||+|||+.||+|+++.+||+||++.|+||+|.++.+ ++|-.+++++...|+
T Consensus 326 itqipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnqlya~ya 405 (489)
T KOG1351 326 ITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYA 405 (489)
T ss_pred EEEEEEEECCCCCCCCCCCCCCCEEECCEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 46413672488766787876455231345887232332567897011666899999876578643532146778899988
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCC-HHHHHHHHHHCC
Q ss_conf 9999999998523446999899999999999999-83599888999-768999998709
Q gi|254780684|r 382 RFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYD-FLKQSPSDLSS-EDVFQEITKKLQ 438 (438)
Q Consensus 382 ~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~-fl~Q~~~e~~~-~~~~~~~~~~l~ 438 (438)
.-++.+.|-.+.+. +.+.++....+++..++++ |+.|..+|-.. ++++.--|+.||
T Consensus 406 igkdvqamkavvge-eals~ed~l~lefl~kfek~fi~qg~yenrtvfesldi~w~llr 463 (489)
T KOG1351 406 IGKDVQAMKAVVGE-EALSSEDLLYLEFLDKFEKNFISQGAYENRTVFESLDIAWQLLR 463 (489)
T ss_pred HCCHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 43118999987441-00682243899999999987763276332037777777899998
No 48
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=0 Score=574.24 Aligned_cols=411 Identities=24% Similarity=0.320 Sum_probs=361.8
Q ss_pred EEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 1289999525899982688887351899956996079999974199799998048557467888997288-555246668
Q gi|254780684|r 23 GGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
.|+|.+|.|+++.++|+. .+.+.++|.+ ++..+.||||.++++++.+|+|++|.||++|++|..||+ +++.+|++|
T Consensus 2 ~G~i~~isGp~V~a~gm~-~~~my~~v~V--g~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGl 78 (588)
T COG1155 2 MGKIIRISGPVVVAEGME-GAKMYDVVKV--GEMGLIGEIIRIEGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGPGL 78 (588)
T ss_pred CCEEEEEECCEEEEECCC-CCCEEEEEEE--CCCCEEEEEEEEECCEEEEEEEEECCCCCCCCEEECCCCCEEEEECCCH
T ss_conf 746999877799980576-7741789997--5775058999985876899999605899999832127982278747547
Q ss_pred HHHHHHHHHHHCC-------------------------------------------------------------------
Q ss_conf 8654307763047-------------------------------------------------------------------
Q gi|254780684|r 102 CGRVINALGKPID------------------------------------------------------------------- 114 (438)
Q Consensus 102 LGRViD~lG~PlD------------------------------------------------------------------- 114 (438)
|+.++||+.||||
T Consensus 79 l~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~ 158 (588)
T COG1155 79 LKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVT 158 (588)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEEEECCCCCCEEEE
T ss_conf 76444311474799998740175457889988855520003466669875268548986067735799837887762899
Q ss_pred -------------------CCCCCC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf -------------------887775-553012112543330001331100111245875200223585037526678899
Q gi|254780684|r 115 -------------------GDDSLG-KGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGK 174 (438)
Q Consensus 115 -------------------g~~~l~-~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGK 174 (438)
..|... .-.++||+..+-|. .++-++.+||.||.|+||+|+|+.||..-.|.|++|+||
T Consensus 159 ~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp~-~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGK 237 (588)
T COG1155 159 WIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARPV-KRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGK 237 (588)
T ss_pred EEECCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCC-CCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 9955887156679999952797487888872664677641-024898775212542310102111576512668888983
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-----CC---CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998740789838993124652238899998642-----77---553289841577880344444456777888864
Q gi|254780684|r 175 STLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-----DN---LKKSVVVVATSDESPILRKMAPLTAVTIAEYFS 246 (438)
Q Consensus 175 t~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-----~~---l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr 246 (438)
|++.++++|++++|++||++|||||+|+.|.+.++-. .| |.||++++|||++|.+.|+.+.|+|.|+|||||
T Consensus 238 TV~qh~laK~sdadiVVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~R 317 (588)
T COG1155 238 TVSQHTLSKLADGDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYR 317 (588)
T ss_pred EEHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 75243565640688899981577652389999868666689999712000367625766618886643532231999887
Q ss_pred HCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCC-----CCCCCCEEEEEEEEECCCCCC
Q ss_conf 267988999709899999987665404778432366324554200444443113-----678852355433342167642
Q gi|254780684|r 247 SKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS-----EKEKGNITAVISVLVDGDNHN 321 (438)
Q Consensus 247 ~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~-----~~~~GSiT~~~~v~~~~dd~~ 321 (438)
|+|+||+++.||.+|||+|+||||..++|+|+.+|||+++-+.++++|||||+. ....||+|.+++|..+|+|++
T Consensus 318 DmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGGdfS 397 (588)
T COG1155 318 DMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDFS 397 (588)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 63025677501389999999987335002886444416789999999985472342278862589998257789999847
Q ss_pred CHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 027899986126089870427758971311445640002212-------0899999999999999999999999998523
Q gi|254780684|r 322 DPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADK-------AWSADEKKLVSSLTHLIHRFEETRDIRLIGG 394 (438)
Q Consensus 322 ~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~-------~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~ 394 (438)
+|++.++..+.--.--||++||++.|||||||+.|.|.+-+. -++++..++...++.+|.+-.++++++++.+
T Consensus 398 EPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG 477 (588)
T COG1155 398 EPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQLVG 477 (588)
T ss_pred CCCCHHEEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 65211003556642001444532323765673777999898888776402582389999999999887799999999857
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCC-HHHHHHHHHHCC
Q ss_conf 446999899999999999999-83599888999-768999998709
Q gi|254780684|r 395 YRPGVDLILDKAVHQVPIIYD-FLKQSPSDLSS-EDVFQEITKKLQ 438 (438)
Q Consensus 395 y~~g~d~~~d~~i~~~~~i~~-fl~Q~~~e~~~-~~~~~~~~~~l~ 438 (438)
+.. +....+.++...+.|++ ||+|+.+++++ +|++.++..+|+
T Consensus 478 ~ea-l~e~~~~il~va~~ire~fLqQnafd~vD~~~~~~kq~~mm~ 522 (588)
T COG1155 478 YDA-LPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRKQYLMLK 522 (588)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 423-662888999999999988876515673101388899999999
No 49
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=0 Score=548.64 Aligned_cols=241 Identities=26% Similarity=0.381 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH----HCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 11245875200223585037526678899999999874----07898389931246522388999986427755328984
Q gi|254780684|r 146 KTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR----SDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVV 221 (438)
Q Consensus 146 ~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~----~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~ 221 (438)
++|+|+||+|+|||||||+|||||+|+|||+|++||++ +....+|||++||||+|||.||+++++ +.+|+
T Consensus 1 d~~~r~ID~l~pigkGQR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~~------~~vv~ 74 (249)
T cd01128 1 ELSTRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK------GEVIA 74 (249)
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHC------EEEEE
T ss_conf 974101543246167867788789998899999999999998589849999997165799999999716------16999
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCC
Q ss_conf 15778803444444567778888642679889997098999999876654047784323663245542004444431136
Q gi|254780684|r 222 ATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE 301 (438)
Q Consensus 222 ~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~ 301 (438)
+|+|+||.+|++++++|+++|||||+||+|||++|||+||||+|||||++..||+++ +||||++|+.+++|+||+++.
T Consensus 75 st~d~~p~~r~~~a~~a~~iAEyfr~~G~dVLl~~DslTR~A~A~rEis~~~ge~~~-~g~~~~~~~~~~~~~~~a~~~- 152 (249)
T cd01128 75 STFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILS-GGVDANALHKPKRFFGAARNI- 152 (249)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC-
T ss_conf 569999899999999999999999987997799951488999998663024698788-997913545548999852678-
Q ss_pred CCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH
Q ss_conf 788523554333421-6764202789998612608987042775897131144564000221208999999999999999
Q gi|254780684|r 302 KEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLI 380 (438)
Q Consensus 302 ~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l 380 (438)
+++||||++|||++| +||+++||++++++|+||||+|||+||++||||||||++|+||+|+++++++|++.+.++|++|
T Consensus 153 e~~GSiT~~~tvlve~~d~~d~~I~~~~~~i~Dg~IvLsr~la~~g~yPAIDv~~S~SR~~~~i~~~~~~~~a~~~R~~l 232 (249)
T cd01128 153 EEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDPEELQRMWLLRRVL 232 (249)
T ss_pred CCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 89953799888876377666726899986517749996399997599986463346210340109999999999999999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999998523
Q gi|254780684|r 381 HRFEETRDIRLIGG 394 (438)
Q Consensus 381 ~~y~~~~~l~~~g~ 394 (438)
+.|+++|+|-.+-+
T Consensus 233 ~~y~~~e~m~~l~~ 246 (249)
T cd01128 233 SDMDPIEAMEFLLK 246 (249)
T ss_pred HCCCHHHHHHHHHH
T ss_conf 66877899999999
No 50
>KOG1350 consensus
Probab=100.00 E-value=0 Score=542.68 Aligned_cols=412 Identities=26% Similarity=0.412 Sum_probs=366.8
Q ss_pred EEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEE-ECCCEEEEEECCCCCCCCCCCEEEECC-CCEEECC
Q ss_conf 20128999952589998268888735189995699607999997-419979999804855746788899728-8555246
Q gi|254780684|r 21 VQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIR-INLDIVYICPVGIGEEISLGDLVFHWG-RFRISPS 98 (438)
Q Consensus 21 ~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~-~~~~~~~l~~~~~~~gI~~G~~V~~~g-~~~i~vG 98 (438)
...|++..|.|.++.|..-....+|-...++.+.+..+..||-. +.++.+....++.++|+.+|.+|..+| ++++|||
T Consensus 50 ~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipVG 129 (521)
T KOG1350 50 KNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPVG 129 (521)
T ss_pred CCCCCEEEEEEEEEEEECCCCCCCHHHCEEECCCCCEEEEHHHHHHCCCEEEEEEECCCHHHHCCCCCCCCCCCEEEECC
T ss_conf 46772799870057875388885332104643788605417877737672789984373112238520247996356317
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 66886543077630478877755530121125433300013311001112458752002235850375266788999999
Q gi|254780684|r 99 ACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178 (438)
Q Consensus 99 ~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll 178 (438)
++.|||++|..|+|+|..||+.. ....||+.++|...+-..-.|.|.||||++|.|.|..||.|+|+|||+|||||+|.
T Consensus 130 ~~tLGRI~NViGePiDerGpi~s-~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlI 208 (521)
T KOG1350 130 PETLGRIMNVIGEPIDERGPIKS-KKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 208 (521)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCHHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCEEEH
T ss_conf 88876688741785544588553-33564224770676514317887624343442132024873444225776613329
Q ss_pred HHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHCCC---C----CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 998740---78983899312465223889999864277---5----532898415778803444444567778888642-
Q gi|254780684|r 179 SMFARS---DCFDKVIISLVGERGREVREFIEDYLGDN---L----KKSVVVVATSDESPILRKMAPLTAVTIAEYFSS- 247 (438)
Q Consensus 179 ~~i~~~---~~~dv~V~alIGeR~rev~efi~~~~~~~---l----~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~- 247 (438)
..+.+| +...+.||+++|||.||..+++.++.+.| + .+..+|+.++|+||..|.+.+.+++|+||||||
T Consensus 209 mELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~ 288 (521)
T KOG1350 209 MELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 288 (521)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCEEECCCCCCEEEEEEECCCCCCCCEEEEEEECCCHHHHHHCC
T ss_conf 99987888862886786314533344307899998638121257763378986215799873014543111599986344
Q ss_pred CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHH
Q ss_conf 67988999709899999987665404778432366324554200444443113678852355433342167642027899
Q gi|254780684|r 248 KGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADS 327 (438)
Q Consensus 248 ~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~ 327 (438)
.|+||||++|++.||.+|..|+|.++|++|+..||+|.+..++..+.||.. ..++||||++++|++|.||++||.|..
T Consensus 289 egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERIT--tTkkGSiTSvQAvYVPADDLtDPaPat 366 (521)
T KOG1350 289 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERIT--TTKKGSITSVQAVYVPADDLTDPAPAT 366 (521)
T ss_pred CCCEEEEEEHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH--CCCCCCEEEEEEEEEEHHCCCCCCCCC
T ss_conf 666689861234666315248999863584102567632011135667630--045675567889985101058987542
Q ss_pred HHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 98612608987042775897131144564000221-20899999999999999999999999998523446999899999
Q gi|254780684|r 328 VRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD-KAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKA 406 (438)
Q Consensus 328 ~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~-~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~ 406 (438)
+.+++|..-+|||.+++.|+|||+||+.|.||+|+ ++++++||..++..+++|+.|++++|+|.+.+..+ ++.+.+..
T Consensus 367 tFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG~eHY~vA~~Vqk~LQ~YKsLQDIIAILGmDE-LSEeDkLT 445 (521)
T KOG1350 367 TFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGEEHYNVARGVQKTLQDYKSLQDIIAILGMDE-LSEEDKLT 445 (521)
T ss_pred EEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HCHHHHHH
T ss_conf 00003323454333676077666587665342368441456777899999999998888988999957301-03012354
Q ss_pred HHHHHHHHHHHCCCCC--C-----CCCHHHHHHHHHH
Q ss_conf 9999999998359988--8-----9997689999987
Q gi|254780684|r 407 VHQVPIIYDFLKQSPS--D-----LSSEDVFQEITKK 436 (438)
Q Consensus 407 i~~~~~i~~fl~Q~~~--e-----~~~~~~~~~~~~~ 436 (438)
+.+.++|+.||.|+.. | +..+.+++++++.
T Consensus 446 V~RARKiqRFLSQPF~VAEvFTG~~GklV~l~~ti~g 482 (521)
T KOG1350 446 VARARKIQRFLSQPFQVAEVFTGHPGKLVPLEETIRG 482 (521)
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCEECHHHHHHH
T ss_conf 9999999998738502454213888724329999999
No 51
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=100.00 E-value=0 Score=546.51 Aligned_cols=211 Identities=58% Similarity=0.889 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECC
Q ss_conf 1245875200223585037526678899999999874078983-8993124652238899998642-7755328984157
Q gi|254780684|r 147 TGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDK-VIISLVGERGREVREFIEDYLG-DNLKKSVVVVATS 224 (438)
Q Consensus 147 TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv-~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~ 224 (438)
||||+||+|+|||||||++|||++|+|||+|+.+|+++.++++ |||++||||+||+.+|++++++ +.++||++|++++
T Consensus 1 TGi~~ID~l~pig~GQr~~I~g~~g~GKt~l~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~~~~~~~~~~t~vv~~~~ 80 (213)
T pfam00006 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKADVVEVYVLIGERGREVAEFIEELLGEGALKRTVVVAATS 80 (213)
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 98400020166457888778789999889999999985661893599813777799999999752137665069998468
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCC
Q ss_conf 78803444444567778888642679889997098999999876654047784323663245542004444431136788
Q gi|254780684|r 225 DESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEK 304 (438)
Q Consensus 225 d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~ 304 (438)
|+||.+|+++||+|+++||||||||+|||+++|||||||+|+||||+++||||+++||||++|+.|++|+||||+.. ++
T Consensus 81 d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~~~~~~l~ERag~~~-~~ 159 (213)
T pfam00006 81 DEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVE-GG 159 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CC
T ss_conf 89878999999999999999997699689983780599999876500147998545639178888799998753468-88
Q ss_pred CCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf 523554333421676420278999861260898704277589713114456400
Q gi|254780684|r 305 GNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVS 358 (438)
Q Consensus 305 GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~S 358 (438)
||||+||+|++++||++|||+|++++++||||+|||+||++|+||||||+.|+|
T Consensus 160 GSiT~l~tv~~~~~d~~dpi~~~~~~~~dg~ivLsr~la~~g~~PAId~~~S~S 213 (213)
T pfam00006 160 GSITALPTVLVPGGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213 (213)
T ss_pred CCEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCC
T ss_conf 634788899804888675156765211355999968999679999728755789
No 52
>KOG1352 consensus
Probab=100.00 E-value=0 Score=545.05 Aligned_cols=410 Identities=22% Similarity=0.365 Sum_probs=355.9
Q ss_pred EEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCH
Q ss_conf 201289999525899982688887351899956996079999974199799998048557467888997288-5552466
Q gi|254780684|r 21 VQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSA 99 (438)
Q Consensus 21 ~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~ 99 (438)
.++|+|.+|+|+++.++++.. +.+.|+|.+ +...+.||||.+++|.+.+++|++|+|+.+||+|.+||+ +++.+|+
T Consensus 19 s~~G~v~~VSGPVV~a~~M~G-~aMYELVrV--Gh~~LvGEiIrlegD~aTIQVYEeTsG~tVgDpvlrTgkPLsvELGP 95 (618)
T KOG1352 19 SEYGRVYSVSGPVVVAENMAG-CAMYELVRV--GHDELVGEIIRLEGDMATIQVYEETSGLTVGDPVLRTGKPLSVELGP 95 (618)
T ss_pred HCCCEEEECCCCEEEECCCHH-HHHHHHHHC--CHHHHCEEEEEECCCEEEEEEEECCCCCCCCCCHHHCCCCCEEEECC
T ss_conf 105148852576575001110-679999971--34753000058617603799981248851487043158851576275
Q ss_pred HHHHHHHHHHHHHCCC---------------CCCCCC-------------------------------------------
Q ss_conf 6886543077630478---------------877755-------------------------------------------
Q gi|254780684|r 100 CWCGRVINALGKPIDG---------------DDSLGK------------------------------------------- 121 (438)
Q Consensus 100 ~lLGRViD~lG~PlDg---------------~~~l~~------------------------------------------- 121 (438)
+++|.++|+..+||.. -+.+..
T Consensus 96 GimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr~~ 175 (618)
T KOG1352 96 GIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPRAR 175 (618)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEECCCCEEEECCEEECCCEEEEEECCCHHHCEEECCCCCC
T ss_conf 36765656543348999875086753478775446700002014550443452105714788631204332021487667
Q ss_pred -------------------------------CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf -------------------------------5301211254333000133110011124587520022358503752667
Q gi|254780684|r 122 -------------------------------GDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGS 170 (438)
Q Consensus 122 -------------------------------~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~ 170 (438)
--+.||++ .|-+..+..+-+.||.||.|++|+|+||++|....|.|..
T Consensus 176 Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR-~pRPv~ekl~an~PLltGQRvLDalfPcVqGGTtaIPGAF 254 (618)
T KOG1352 176 GTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVR-QPRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAF 254 (618)
T ss_pred CEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCC-CCCCHHHCCCCCCCCCCCCHHHHHHCCHHCCCCCCCCCCC
T ss_conf 648998068865211078998736841157789861457-7764111167899641330688754421238861167645
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-----CC-----CCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 88999999998740789838993124652238899998642-----77-----553289841577880344444456777
Q gi|254780684|r 171 GIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-----DN-----LKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 171 GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-----~~-----l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
|+|||++...+.|+++.|++||++|||||+|+.|.+.++-+ +| |+||++|++|||+|.++|..+.|++.|
T Consensus 255 GCGKTVISQsLSKYSNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREASIYTGIT 334 (618)
T KOG1352 255 GCGKTVISQSLSKYSNSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREASIYTGIT 334 (618)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCHHHEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCEE
T ss_conf 65547777777540578769997366652158999873712286348842145544122104788850443202331506
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCC-----CCCCCCEEEEEEEEE
Q ss_conf 888864267988999709899999987665404778432366324554200444443113-----678852355433342
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS-----EKEKGNITAVISVLV 315 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~-----~~~~GSiT~~~~v~~ 315 (438)
++|||||||+||-.+.||.+|||+|+||||..++|+|.--|||+++-+.|+.+|||||+. .++.||+|...+|.+
T Consensus 335 lsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsVsIVgAVSP 414 (618)
T KOG1352 335 LSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSVSIVGAVSP 414 (618)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEECC
T ss_conf 99999862764455415446899999986305641867679727888899999986470254379876760699986269
Q ss_pred CCCCCCCHHHHHHHHHCCCEEE--EEHHHHHCCCCCCCCCCCCCCCCCHHC------CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1676420278999861260898--704277589713114456400022120------89999999999999999999999
Q gi|254780684|r 316 DGDNHNDPIADSVRSILDGHIV--LNRSLAEEGRYPPVDPLASVSRLADKA------WSADEKKLVSSLTHLIHRFEETR 387 (438)
Q Consensus 316 ~~dd~~~pi~~~~~~i~DG~i~--L~r~la~~g~~Paid~~~S~SR~~~~~------~~~~~~~~~~~~~~~l~~y~~~~ 387 (438)
||+||+||++.++.+|+ |++ ||++||++.|||.|||+.|.|+.|... ..++...+..+.|.+|+..+++.
T Consensus 415 pGGDFsDPVTsATLgIv--QVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~keilq~eedl~ 492 (618)
T KOG1352 415 PGGDFSDPVTSATLGIV--QVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKAKEILQEEEDLS 492 (618)
T ss_pred CCCCCCCCCHHHHHHEE--EEHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99886773002112001--0001024777753038862034518999987777787428876406889999975355699
Q ss_pred HHHHHHCCCCCCCHHHHHH-HHHHHHHH-HHHCCCCCCCCC-HHHHHHHHHHCC
Q ss_conf 9998523446999899999-99999999-983599888999-768999998709
Q gi|254780684|r 388 DIRLIGGYRPGVDLILDKA-VHQVPIIY-DFLKQSPSDLSS-EDVFQEITKKLQ 438 (438)
Q Consensus 388 ~l~~~g~y~~g~d~~~d~~-i~~~~~i~-~fl~Q~~~e~~~-~~~~~~~~~~l~ 438 (438)
+++++.+ ...-.++|+. ++-...|. +||+||.+.+.+ +|+|.++..+||
T Consensus 493 eivQLVG--K~aLaetdKitLevaklikdDfLqQN~ys~YD~~CPfyKt~~Mlr 544 (618)
T KOG1352 493 EIVQLVG--KSALAETDKITLEVAKLIKDDFLQQNGYSPYDRFCPFYKTVGMLR 544 (618)
T ss_pred HHHHHHH--HHHHCCCCCEEHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHH
T ss_conf 9999853--554245552312388787888887559982430480577799999
No 53
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit; InterPro: IPR005724 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the beta subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) (IPR005726 from INTERPRO), and beta (or B), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=525.34 Aligned_cols=403 Identities=27% Similarity=0.400 Sum_probs=372.6
Q ss_pred EEEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCCC-EEEECCC-CEEECCH
Q ss_conf 12899995258999826888873518999569-9607999997419979999804855746788-8997288-5552466
Q gi|254780684|r 23 GGYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLGD-LVFHWGR-FRISPSA 99 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~-~V~~~g~-~~i~vG~ 99 (438)
+-.|..|.|+++.+++.. .+.+.|++.++.. +....|+|+....+.+.+++|+.+.++.... .|..+|. +.++++.
T Consensus 2 y~~~~~~~GPl~~v~~~~-~~~y~e~v~~~~~~G~~~~G~vl~~~~~~~~~~~~~g~~~~~~~~~~v~~~G~~~~~~~~~ 80 (458)
T TIGR01041 2 YKTITEIKGPLVIVEGVE-PVAYDEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDKEATKVRFLGETLKLPVSE 80 (458)
T ss_pred CCCCCCCCCCEEEEECCC-CCCCEEEEEEECCCCCCCCCCEEECCCCEEEEEEECCHHCCCCCCCEEEEECCEEEEHHHH
T ss_conf 654101037568984243-2121001566405787423403530376579885211101122341789841302420107
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 68865430776304788777555301211254333000133110011124587520022358503752667889999999
Q gi|254780684|r 100 CWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLS 179 (438)
Q Consensus 100 ~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~ 179 (438)
++||||+++.|+|+|++|.+... ....+.+.+.||..|..+.+.+.|||.+||+++++.||||++||+++|.+++.|+.
T Consensus 81 ~~lGr~~~g~G~~~d~GP~~~~~-~~~~~~G~~~nP~~r~~P~~fiqtG~s~idG~n~l~rG~kl~~fs~sGlP~~~la~ 159 (458)
T TIGR01041 81 DLLGRILNGSGEPIDGGPEIVPD-ERRDINGAALNPAAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAA 159 (458)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCC-CHHCCCCCCCCCHHHCCCHHHHHHCHHHHHHHHHHHCCCCCCEECCCCCCHHHHHH
T ss_conf 88888850267755677652432-00023565458432204157875110243212454325421100036887778999
Q ss_pred HHHHHCC------CCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HCCCC
Q ss_conf 9874078------9838993124652238899998642-77553289841577880344444456777888864-26798
Q gi|254780684|r 180 MFARSDC------FDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFS-SKGDN 251 (438)
Q Consensus 180 ~i~~~~~------~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr-~~G~~ 251 (438)
+|+|++. .-.+||+++|-+..|...|.+.+.. .++.|.+++++-+|+|+..|..+|.+|+|.|||+. ++..|
T Consensus 160 qia~qa~v~~~~~~favvf~a~G~~~~~~~~f~~~f~~tGal~r~~~~~~la~~P~~~~~~tP~~alt~aeyla~~~d~h 239 (458)
T TIGR01041 160 QIARQAKVRGEESEFAVVFAAMGITYEEANFFMKDFERTGALERAVVFLNLADDPAVERIVTPRMALTLAEYLAFEKDMH 239 (458)
T ss_pred HHHHHHCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 98863101235532143301022436889999998864043211002332026731123310367888999876306764
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 89997098999999876654047784323663245542004444431136788523554333421676420278999861
Q gi|254780684|r 252 VLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331 (438)
Q Consensus 252 Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i 331 (438)
||+++.|||+|++|+|||+.+..|.|+|+|||+++|++++.+|||||+..+..||||.+|++.+|+||++|||||.+.+|
T Consensus 240 vl~il~d~tny~ealr~~~aar~evPGr~GyPGy~y~dla~~yeraG~~~G~~G~~tq~Pil~mP~dd~thPiPdl~Gyi 319 (458)
T TIGR01041 240 VLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATLYERAGRVKGKKGSITQIPILTMPGDDITHPIPDLTGYI 319 (458)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEE
T ss_conf 66405557789999987643444078888987237888999987506021476534530034258877657776433301
Q ss_pred CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 26089870427758971311445640002212089-----9999999999999999999999998523446999899999
Q gi|254780684|r 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWS-----ADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKA 406 (438)
Q Consensus 332 ~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~-----~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~ 406 (438)
|+|||+|+|+|+.+|+||+||++.|+||+|.+..+ ++|.+++.++-..|+.-.++++|+.+.+. ..+.....+.
T Consensus 320 teGqi~~~r~l~~~Gi~PP~~~l~slsrl~~~G~G~G~tr~dh~~~~~q~ya~ya~~~~~r~l~~~vG~-~~l~~~d~~~ 398 (458)
T TIGR01041 320 TEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRDLVAIVGE-EALSERDRKY 398 (458)
T ss_pred ECCEEEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 135346730265178988167888999997436788874245899998888767524568889998602-4555778999
Q ss_pred HHHHHHHHH-HHCCCCCCCCCHH
Q ss_conf 999999999-8359988899976
Q gi|254780684|r 407 VHQVPIIYD-FLKQSPSDLSSED 428 (438)
Q Consensus 407 i~~~~~i~~-fl~Q~~~e~~~~~ 428 (438)
+.+...+++ |++|...+-.+-+
T Consensus 399 l~fa~~fe~~f~~qg~~~~r~i~ 421 (458)
T TIGR01041 399 LKFADEFERKFVKQGRKEDRSIE 421 (458)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 99999999999863332010178
No 54
>TIGR01040 V-ATPase_V1_B V-type ATPase, B subunit; InterPro: IPR005723 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release . V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c, c d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins . This entry represents subunit B from the V1 complex of V-ATPases. There are three copies each of subunits A (IPR005725 from INTERPRO) and B, both of which participate in nucleotide binding. However, only subunit A is catalytic for ATP hydrolysis, subunit B being noncatalytic , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0008553 hydrogen-exporting ATPase activity phosphorylative mechanism, 0015988 energy coupled proton transport against electrochemical gradient, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=516.64 Aligned_cols=413 Identities=22% Similarity=0.339 Sum_probs=374.6
Q ss_pred EEEEEEEECCEEEEECCCCCCCCCCEEEEE-CCCCCEEEEEEEECCCEEEEEECCCCCCCCCC-CEEEECCC-CEEECCH
Q ss_conf 128999952589998268888735189995-69960799999741997999980485574678-88997288-5552466
Q gi|254780684|r 23 GGYISSITSVYYTVTCLSQYVCLGDFVVHQ-GKNSDNLGQVIRINLDIVYICPVGIGEEISLG-DLVFHWGR-FRISPSA 99 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~-~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G-~~V~~~g~-~~i~vG~ 99 (438)
+-+|..|.|+++.++.+ ....+.|++.+. .++....|+|+.+.++++.+++|+++.||..- +.+..+|. +++++++
T Consensus 2 y~~~~~v~GPlv~l~~v-~~~~~~eiv~~~l~~g~~r~Gqvle~~~~~a~vqvfeGt~G~d~~~~~~~~~G~~l~~~~s~ 80 (464)
T TIGR01040 2 YKTVSGVNGPLVILENV-KFPKFAEIVNLTLPDGTVRKGQVLEVSGEKAVVQVFEGTSGIDAKKTTVEFTGDILRLPVSE 80 (464)
T ss_pred CCEECCCCCCEEEEHHC-CCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEECCHHHHHHHHH
T ss_conf 62000046644230010-55120004667616786123305776077208998247644122231455421023112204
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 68865430776304788777555301211254333000133110011124587520022358503752667889999999
Q gi|254780684|r 100 CWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLS 179 (438)
Q Consensus 100 ~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~ 179 (438)
++||||+||.|+|+|.+|.+...+ ...+.+.++||..|..+.|.+.|||.+||.++.|.||||++||+.+|.+++.+.+
T Consensus 81 ~mlGr~f~GsG~~id~gP~~l~~~-y~d~~G~~inP~~r~yP~em~~tG~s~id~~~si~rGqkiP~fsa~GlPhne~aa 159 (464)
T TIGR01040 81 DMLGRVFNGSGKPIDKGPKVLAED-YLDINGQPINPQARIYPEEMIQTGISAIDVMNSIARGQKIPLFSAAGLPHNEIAA 159 (464)
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHH-HHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHH
T ss_conf 531011036775223565310354-4114786458621147388985020256656665436533123047886356788
Q ss_pred HHHHHCC------------CCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9874078------------983899312465223889999864277-553289841577880344444456777888864
Q gi|254780684|r 180 MFARSDC------------FDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFS 246 (438)
Q Consensus 180 ~i~~~~~------------~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr 246 (438)
+|+|++. .-.+||+++|..-...+.|.+++.+.| |++++++.+-+++|..+|..+|..|++.|||+.
T Consensus 160 qi~rq~~lv~~~~~~~~~~~f~~vf~amGvn~e~a~ff~~df~~~G~~~~~~lflnlandPt~eri~tPr~al~~ae~la 239 (464)
T TIGR01040 160 QICRQAGLVKKDVKDGHEDNFAIVFAAMGVNLETARFFKQDFEENGSMERVTLFLNLANDPTIERIITPRLALTTAEYLA 239 (464)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCHHHHCHHHHHHHHHHHH
T ss_conf 88887788888764022343156520010105788999886753477101356654147853012200036777787776
Q ss_pred H-CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHH
Q ss_conf 2-679889997098999999876654047784323663245542004444431136788523554333421676420278
Q gi|254780684|r 247 S-KGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIA 325 (438)
Q Consensus 247 ~-~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~ 325 (438)
+ +++|||+++.||+.||+|+||+|.+.+|.|+|+|||+++|++++.+|||||+..++.||||.+|++++|+||++||||
T Consensus 240 y~~~~hvl~iltd~ssya~alrevsaareevPgrrG~PGymy~dl~~iyeraGrv~Gr~Gsitq~PiltmPnddithPiP 319 (464)
T TIGR01040 240 YECEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIP 319 (464)
T ss_pred HHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 52476079985033579999987765554067778887325777899876304211676642420024257644567765
Q ss_pred HHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99986126089870427758971311445640002212089-----9999999999999999999999998523446999
Q gi|254780684|r 326 DSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWS-----ADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD 400 (438)
Q Consensus 326 ~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~-----~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d 400 (438)
|.+.+||+||||+||+|+++.+||+||++.|+||+|.++++ .+|..+++++...|+.-++...+-.+.+. +.+.
T Consensus 320 dltGyitegqiy~dr~l~~~~iyPPi~vlPslsrlmk~aiG~gmtr~dh~~vs~qly~~~~~~~d~~amkavvG~-eal~ 398 (464)
T TIGR01040 320 DLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYAKYAIGKDVAAMKAVVGE-EALS 398 (464)
T ss_pred CCCCEEECCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC
T ss_conf 321102224245510143055788323556689998875235310124788999999888888789999887402-2214
Q ss_pred HHHHHHHHHHHHHHH-HHCCCCCCCCC-HHHHHHHHHHCC
Q ss_conf 899999999999999-83599888999-768999998709
Q gi|254780684|r 401 LILDKAVHQVPIIYD-FLKQSPSDLSS-EDVFQEITKKLQ 438 (438)
Q Consensus 401 ~~~d~~i~~~~~i~~-fl~Q~~~e~~~-~~~~~~~~~~l~ 438 (438)
.+....+++..++++ |+.|+.++... ++++...|..||
T Consensus 399 ~~d~l~l~f~~~fe~~f~~qg~y~~r~~~~~ld~~W~llr 438 (464)
T TIGR01040 399 SEDLLYLEFLEKFEKKFIAQGAYENRTIFESLDLAWELLR 438 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 1311245788899887751265210268988988899999
No 55
>TIGR01039 atpD ATP synthase F1, beta subunit; InterPro: IPR005722 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the beta subunit found in the F1 complex of F-ATPases. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself is driven by the movement of protons through the F0 complex C subunit , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0008553 hydrogen-exporting ATPase activity phosphorylative mechanism, 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0006754 ATP biosynthetic process, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=486.25 Aligned_cols=394 Identities=29% Similarity=0.433 Sum_probs=353.6
Q ss_pred EEEEEEEECCEEEEECCCCC-CCCCCEEEEECCCCCEEEEEEE-ECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCH
Q ss_conf 12899995258999826888-8735189995699607999997-4199799998048557467888997288-5552466
Q gi|254780684|r 23 GGYISSITSVYYTVTCLSQY-VCLGDFVVHQGKNSDNLGQVIR-INLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSA 99 (438)
Q Consensus 23 ~G~V~~V~G~ii~v~Gl~~~-v~iGelv~i~~~~~~v~geVi~-~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~ 99 (438)
.|+|..|.|+++.+..-... ..+-+.+.+..... +.-||-. +.++.+....++.++|+..|..|..++. ..+|+|.
T Consensus 2 ~G~~~~v~g~vvdv~f~~~~~P~~~~~l~~~~~~~-l~~e~~~~~G~~~vr~ia~~~~~Gl~r~~~~~~~~~~i~vPvG~ 80 (460)
T TIGR01039 2 KGKVVQVIGPVVDVEFEESKLPEIYDALKVELEKE-LVLEVAQHLGDDTVRAIALDSTDGLVRGLEVVDTGKPIEVPVGK 80 (460)
T ss_pred CCEEEEEEHHHEEEEECHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCEEEECCCC
T ss_conf 86044401002011114000267998875541025-56344765067605678731433302213555438725511474
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 68865430776304788777555301211254333000133110011124587520022358503752667889999999
Q gi|254780684|r 100 CWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLS 179 (438)
Q Consensus 100 ~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~ 179 (438)
..+||++|.+|+|+|..+++.... .+++++.+|...+...-.+.|+||||+||.|.|..+|.|+++|||+|+|||+++.
T Consensus 81 ~~~G~~~nv~G~~~d~~~~~~~~~-~~~~~~~~P~~~~~~~~~~~l~tG~kv~dll~P~~~GGk~glfGGaGvGktv~~~ 159 (460)
T TIGR01039 81 EVLGRIFNVLGEPIDEKGEVKKKE-KLPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQ 159 (460)
T ss_pred CHHHHHHHHHCHHCCCCCCCHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 045578766210003411100234-2012206851344334678987336888775154328806773176622456689
Q ss_pred HHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CC-CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEE
Q ss_conf 98740---78983899312465223889999864277-55-32898415778803444444567778888642-679889
Q gi|254780684|r 180 MFARS---DCFDKVIISLVGERGREVREFIEDYLGDN-LK-KSVVVVATSDESPILRKMAPLTAVTIAEYFSS-KGDNVL 253 (438)
Q Consensus 180 ~i~~~---~~~dv~V~alIGeR~rev~efi~~~~~~~-l~-~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~-~G~~Vl 253 (438)
.+.++ ......||+++|||.||..+++.++...+ +. ++.+|+..+++||+.|.+.+++++|+|||||| +++|||
T Consensus 160 eli~~~a~~~~G~sv~~GvGertreGndly~e~~~~~v~~~~~~lv~Gqm~ePPG~r~rva~~~lt~ae~frd~~~~dvl 239 (460)
T TIGR01039 160 ELINNIAKEHGGLSVFAGVGERTREGNDLYLEMKESGVINSKVALVYGQMNEPPGARLRVALTGLTMAEYFRDEEGQDVL 239 (460)
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999998628807985066533325689999873241012326887213689874110345677888875112466378
Q ss_pred EEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 99709899999987665404778432366324554200444443113678852355433342167642027899986126
Q gi|254780684|r 254 LILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILD 333 (438)
Q Consensus 254 l~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~D 333 (438)
+++|++.||.+|..|+|.++|++|+.-||.|.+..++..|.||.. ....||||++.+|++|.||++||.|..+.+++|
T Consensus 240 ~f~dnifrf~~aG~e~s~llGr~PsavGyqPtl~~~~G~lqeri~--st~~~s~ts~qa~yvPadd~tdPaP~~~fahld 317 (460)
T TIGR01039 240 LFIDNIFRFTQAGSEVSALLGRLPSAVGYQPTLATEMGELQERIT--STKKGSITSVQAVYVPADDLTDPAPATTFAHLD 317 (460)
T ss_pred EEEHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 851446777631047898861011000566303566767877765--213553256767863320257886303444400
Q ss_pred CEEEEEHHHHHCCCCCCCCCCCCCCCCC-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 0898704277589713114456400022-120899999999999999999999999998523446999899999999999
Q gi|254780684|r 334 GHIVLNRSLAEEGRYPPVDPLASVSRLA-DKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPI 412 (438)
Q Consensus 334 G~i~L~r~la~~g~~Paid~~~S~SR~~-~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~ 412 (438)
...+|+|++++.|+||||||+.|.||.+ +.+++.+||+.+..++.+|.+|++++|++.+.+..+ +..+.+..+.+.++
T Consensus 318 a~~~l~r~~~~~GiyPav~Pl~s~s~~l~~~~vG~~hy~~a~~v~~~lq~y~~l~diiailG~de-l~~~d~~~v~rar~ 396 (460)
T TIGR01039 318 ATTVLSRKIAELGIYPAVDPLDSTSRLLDPEVVGEEHYEVAREVQSILQRYKELQDIIAILGLDE-LSEEDKLVVERARK 396 (460)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHH
T ss_conf 02454566875177655465101344430565216789999999999998887888988843144-11446899999999
Q ss_pred HHHHHCCCC
Q ss_conf 999835998
Q gi|254780684|r 413 IYDFLKQSP 421 (438)
Q Consensus 413 i~~fl~Q~~ 421 (438)
|+.||.|+.
T Consensus 397 i~~flsq~~ 405 (460)
T TIGR01039 397 IERFLSQPF 405 (460)
T ss_pred HHHHHCCCH
T ss_conf 998731320
No 56
>TIGR01042 V-ATPase_V1_A V-type ATPase, A subunit; InterPro: IPR005725 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release . V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c, c d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins . This entry represents subunit A from the V1 complex of V-ATPases. There are three copies each of subunits A and B (IPR005723 from INTERPRO), both of which participate in nucleotide binding. However, only subunit A is catalytic, functioning in ATP hydrolysis to drive the rotation of the D and F subunits of V1, as well as the V0 complex c-ring rotor subunit for proton translocation , . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=100.00 E-value=0 Score=472.45 Aligned_cols=411 Identities=23% Similarity=0.364 Sum_probs=356.7
Q ss_pred EEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHH
Q ss_conf 01289999525899982688887351899956996079999974199799998048557467888997288-55524666
Q gi|254780684|r 22 QGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSAC 100 (438)
Q Consensus 22 ~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~ 100 (438)
.+|.|.+|.|+++.+..+.. +.+.|++.+ +...+.|||+.+++|.+.+++|+.+.|+..||.|.+|++ +++.+|++
T Consensus 1 ~~G~~~~vsGPvv~a~~~~G-~~~yelv~v--G~~~l~Ge~irl~~d~atiqvyeet~G~~v~d~v~rt~~Plsv~lGPG 77 (596)
T TIGR01042 1 EYGSIKKVSGPVVVAENMAG-AAMYELVRV--GHEELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPG 77 (596)
T ss_pred CCCEEEECCCCEEEECCCCC-CHHHHHHHH--CCHHHCEEEEEECCCEEEEEEEECCCCEEECCCHHCCCCCCEEECCCH
T ss_conf 96326642575234011134-024455550--410001254676077058988641455044451000378514640620
Q ss_pred HHHHHHHHHHHHCC------------------------------------------------------------------
Q ss_conf 88654307763047------------------------------------------------------------------
Q gi|254780684|r 101 WCGRVINALGKPID------------------------------------------------------------------ 114 (438)
Q Consensus 101 lLGRViD~lG~PlD------------------------------------------------------------------ 114 (438)
+++.++|+..+||.
T Consensus 78 ~~~~i~dGiqrPl~~i~~~~~~~yiP~G~~~~~l~~~~~W~f~~~~~~~~G~~~~GGd~~~~v~en~l~~~~~~l~P~~~ 157 (596)
T TIGR01042 78 LLGNIFDGIQRPLKAIAEASQSIYIPRGVNVPALDREKKWEFTPSKKLRVGDHITGGDIYGLVEENSLLKHKILLPPRAR 157 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHCHHHHCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHCEEEECCCCC
T ss_conf 47777656545699998621425224676403211112101121010013750026504665410012101023355776
Q ss_pred ------------------------CCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf ------------------------88777555301211254333000133110011124587520022358503752667
Q gi|254780684|r 115 ------------------------GDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGS 170 (438)
Q Consensus 115 ------------------------g~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~ 170 (438)
|...-..-...||+.. +-|..++..-+.||.||-|++|+|+|+.+|....|.|..
T Consensus 158 G~~~~~a~~G~y~~~~~~le~ef~G~~~~~~~~~~WPvr~-~rP~~~~~~a~~Pll~Gqrvld~lfP~v~GGt~~ipGaf 236 (596)
T TIGR01042 158 GTITYIAPAGEYTVEEKVLEVEFDGKKKKYSMLQVWPVRS-PRPVAEKLAANTPLLTGQRVLDALFPSVQGGTTAIPGAF 236 (596)
T ss_pred CEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEECCCCC-CCCHHHHHCCCCCCEEHHHHHHHHCCCCCCCCEEECCCC
T ss_conf 2079973587601100357654247300024544326666-564034313578611014677754333267741203565
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH------HCCC-----CCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 889999999987407898389931246522388999986------4277-----55328984157788034444445677
Q gi|254780684|r 171 GIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDY------LGDN-----LKKSVVVVATSDESPILRKMAPLTAV 239 (438)
Q Consensus 171 GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~------~~~~-----l~~tvvv~~t~d~~~~~r~~a~~~a~ 239 (438)
|+|||++...+.|+++.|.+||++|||||+|+.|++.++ ..+| |+||.+|++|+++|...|..+.|++.
T Consensus 237 GCGktvisq~lskysnsd~i~yvGCGerGnem~evl~~fP~l~~~~~~G~~~~imkrt~lvantsnmPvaareasiytGi 316 (596)
T TIGR01042 237 GCGKTVISQSLSKYSNSDVIVYVGCGERGNEMAEVLRDFPELTIEVPDGREESIMKRTTLVANTSNMPVAAREASIYTGI 316 (596)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCHHHEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 65325766555532147617996068751268999863203057404787420233332210024675022111233002
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCC-----CCCCCCEEEEEEEE
Q ss_conf 7888864267988999709899999987665404778432366324554200444443113-----67885235543334
Q gi|254780684|r 240 TIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS-----EKEKGNITAVISVL 314 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~-----~~~~GSiT~~~~v~ 314 (438)
|+||||||+|++|-++.||.+|||+|+||||..++|+|.-.|||.++-+.++.+|||+|+. .++.||+|.+.+|.
T Consensus 317 tl~eyfrd~G~~~~m~ads~srWaealreisGrl~emPad~GyPayl~a~lasfye~~G~~~~~G~P~r~G~v~iv~avs 396 (596)
T TIGR01042 317 TLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVS 396 (596)
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEEC
T ss_conf 57677763287267753440368999987631332166677850678878887763057145404888651068997306
Q ss_pred ECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHH------CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2167642027899986126089870427758971311445640002212------0899999999999999999999999
Q gi|254780684|r 315 VDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADK------AWSADEKKLVSSLTHLIHRFEETRD 388 (438)
Q Consensus 315 ~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~------~~~~~~~~~~~~~~~~l~~y~~~~~ 388 (438)
++|+|++||++.++.+|..-.--||++||++.|||.||++.|.|+.+.. -..++...+..++|.+++..+++.+
T Consensus 397 P~GGdfsdPvt~atl~i~qvfWGldkklaqrkh~Ps~n~~~sys~y~~~l~~~y~~~~~~f~~lr~~~~~~l~~~~~l~~ 476 (596)
T TIGR01042 397 PPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLRALEEFYEKNYPEFVSLRTKIKEILQEEEELEE 476 (596)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89887565212445444354331235666421576044533278999999987531030379999999999740345899
Q ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHH-HHHCCCCCC-CCCHHHHHHHHHHCC
Q ss_conf 998523446999899999-99999999-983599888-999768999998709
Q gi|254780684|r 389 IRLIGGYRPGVDLILDKA-VHQVPIIY-DFLKQSPSD-LSSEDVFQEITKKLQ 438 (438)
Q Consensus 389 l~~~g~y~~g~d~~~d~~-i~~~~~i~-~fl~Q~~~e-~~~~~~~~~~~~~l~ 438 (438)
++++.+- ..+ .+.|+. ++....|. +||+|+.+. +..+|+|.++..+|+
T Consensus 477 ~vqlvGk-~~l-~~~dk~~l~~a~~~~~d~l~qn~~~~yd~~CP~yk~~~m~~ 527 (596)
T TIGR01042 477 IVQLVGK-SAL-AETDKITLEVAKLIKEDFLQQNGYSKYDKFCPFYKTVGMLR 527 (596)
T ss_pred HHHHHHH-HHH-CCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHH
T ss_conf 9998411-320-13451024689999987653136530122362488999999
No 57
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=5.6e-45 Score=346.97 Aligned_cols=296 Identities=24% Similarity=0.299 Sum_probs=236.8
Q ss_pred CEEEEEECC-CCCCCCCCCEEEECCCCEEE-CCHHHHHHHHHHHHHHC---------CCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 979999804-85574678889972885552-46668865430776304---------78877755530121125433300
Q gi|254780684|r 68 DIVYICPVG-IGEEISLGDLVFHWGRFRIS-PSACWCGRVINALGKPI---------DGDDSLGKGDLSMEIMSKVPPAM 136 (438)
Q Consensus 68 ~~~~l~~~~-~~~gI~~G~~V~~~g~~~i~-vG~~lLGRViD~lG~Pl---------Dg~~~l~~~~~~~~i~~~~p~p~ 136 (438)
+.+++.+-. .-.+++.|+.|.-. ..-| -|+.| -+|-...|.+. |...|+.+.+ +..+...+-
T Consensus 44 dDiYVS~sqIrrf~LR~GD~V~G~--iR~p~~geaL-~~V~~VNg~~pe~~~~R~~F~~LTPi~P~e-rl~LE~~~~--- 116 (379)
T PRK12608 44 DDVYVSPALIRRFGLRTGDLVEGV--IRAPREKETL-VRIDSVNGTDPEKLQRRKHFDDLTPLHPEE-RIVLETGSD--- 116 (379)
T ss_pred CCEEECHHHHHHCCCCCCCEEEEE--ECCCCCCHHH-EEEHHCCCCCHHHHCCCCCCCCCCCCCCCC-EEECCCCCC---
T ss_conf 881009999975499999989998--6389987420-414523894989955746755687779965-044014887---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH----HCCCCCEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 01331100111245875200223585037526678899999999874----07898389931246522388999986427
Q gi|254780684|r 137 NRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR----SDCFDKVIISLVGERGREVREFIEDYLGD 212 (438)
Q Consensus 137 ~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~----~~~~dv~V~alIGeR~rev~efi~~~~~~ 212 (438)
+.--|+||.+.|||+|||-+|+|++++|||+||.+||+ |+....+++.||+||.+||.+|.+...++
T Consensus 117 ---------~~s~RiiDL~aPIGkGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDERPEEVTdm~r~v~gE 187 (379)
T PRK12608 117 ---------DLSMRVLDLVAPIGKGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDERPEEVTDMKRSVKGE 187 (379)
T ss_pred ---------CCCCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCEE
T ss_conf ---------64411031004634574012745898657899999999998579984899998168935888888623707
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCH
Q ss_conf 75532898415778803444444567778888642679889997098999999876654047784323663245542004
Q gi|254780684|r 213 NLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPR 292 (438)
Q Consensus 213 ~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~ 292 (438)
||+||.|+||..+.+.+.+++..|++++++|+||++++||+||+|+||+.++...|+..+ |+....+-..|+
T Consensus 188 ------VvaSTfD~~~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRAyn~~~~~sGr~ls--gg~d~~al~~pk 259 (379)
T PRK12608 188 ------VYASTFDRPYDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARAYNSEVDSSGRTLS--GGVDARALERPK 259 (379)
T ss_pred ------EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHH
T ss_conf ------999779899899999999999999999876996899965177889987533688886157--786956750068
Q ss_pred HHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHH
Q ss_conf 444431136788523554333421-6764202789998612608987042775897131144564000221208999999
Q gi|254780684|r 293 LLERIGPSEKEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKK 371 (438)
Q Consensus 293 l~ERag~~~~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~ 371 (438)
.+..|++..+++||+|+|+|++++ |++|+|+|.++++++.++||+|||+||++++|||||+.+|.+|--.-..+++..+
T Consensus 260 ~~Fgaar~ie~gGSlTiiaTaLveTgs~mD~~i~eefkgtgn~el~Ldr~la~~r~fPAIdi~~SgTR~EelLl~~~e~~ 339 (379)
T PRK12608 260 RLFGAARKIEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLDSKELE 339 (379)
T ss_pred HHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHH
T ss_conf 98531257778866325666632266643458899963268608997255776788751155457762266548999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780684|r 372 LVSSLTHLIHRFEETR 387 (438)
Q Consensus 372 ~~~~~~~~l~~y~~~~ 387 (438)
....+|+.++.....+
T Consensus 340 ~~~~lRr~l~~~~~~e 355 (379)
T PRK12608 340 KVRLLRRALASLKPVE 355 (379)
T ss_pred HHHHHHHHHCCCCHHH
T ss_conf 9999999861799799
No 58
>KOG1353 consensus
Probab=100.00 E-value=0 Score=356.82 Aligned_cols=311 Identities=23% Similarity=0.298 Sum_probs=279.4
Q ss_pred HHHHHHHCC-CCEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEE
Q ss_conf 999974133-4212012899995258999826888873518999569960799999741997999980485574678889
Q gi|254780684|r 9 AQLAEDYSK-NLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLV 87 (438)
Q Consensus 9 ~~~~~~~~~-~l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V 87 (438)
+..+..+.. .-..++|+|.+|.+++..|.||. .+.-+|+++|.++ +.|+.+.++.+.+.+.+|++..-++.|+.|
T Consensus 6 EErI~~~~~~a~leEtg~VLsIGdGIArV~GL~-nvQAeE~vEFssG---lKgmalnle~~~vg~v~~g~d~~ikeg~~V 81 (340)
T KOG1353 6 EERIVGDNTSADLEETGRVLSIGDGIARVYGLT-NVQAEEMVEFSSG---LKGMALNLEGENVGVVVFGEDSLIKEGDTV 81 (340)
T ss_pred HHHHHCCCCCCCHHHCCCEEEECCCEEEEECCC-CCCHHHHHHHHCC---CCCHHCCCCCCCEEEEEECCCCEECCCCEE
T ss_conf 898635566555444363678747340221533-0036778856324---321002566771589997574022147558
Q ss_pred EECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 97288-55524666886543077630478877755530121125433300013311001112458752002235850375
Q gi|254780684|r 88 FHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGV 166 (438)
Q Consensus 88 ~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gI 166 (438)
..++. .-+||++.|||||.|++|+|+||+|++...+.+ +..|..+.||.+||+|++|++.|||||||.+|
T Consensus 82 krTgaIvDVpvg~~LlgrvvdAlGn~idgkG~i~~~~~~---------ii~r~sv~epmqtg~KAvdslVpigRgqrELi 152 (340)
T KOG1353 82 KRTAAISDVPPLKALLGRVGCALGEPIDGNGKISAKERR---------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELI 152 (340)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCEECCCCCCCCCCCC---------CCCCEEEECHHHHHHHHHHCEEEECCCCEEEE
T ss_conf 966665126716777522045306743588875632123---------24531240523666668660210335856787
Q ss_pred ECCCCCCHHHHH--HHHHHHC--------CCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 266788999999--9987407--------89838993124652238899998642-775532898415778803444444
Q gi|254780684|r 167 FAGSGIGKSTLL--SMFARSD--------CFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAP 235 (438)
Q Consensus 167 fg~~GvGKt~Ll--~~i~~~~--------~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~ 235 (438)
++++.+|||.|. ..++++. ..-.|||++||++...|+.++..+.. ++|++|++|++|++
T Consensus 153 IgdRqTGkTsla~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~y~ivv~atas---------- 222 (340)
T KOG1353 153 IGDRQTGKTSLAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAMEYSIVVAATAS---------- 222 (340)
T ss_pred ECCCCCCCEEEEEHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC----------
T ss_conf 3156668545410444454641234343350799999606104089999988875587227999985013----------
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 56777888864267988999709899999987665404778432366324554200444443113678852355433342
Q gi|254780684|r 236 LTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLV 315 (438)
Q Consensus 236 ~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~ 315 (438)
T Consensus 223 -------------------------------------------------------------------------------- 222 (340)
T KOG1353 223 -------------------------------------------------------------------------------- 222 (340)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 16764202789998612608987042775897131144564000221208999999999999999999999999985234
Q gi|254780684|r 316 DGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGY 395 (438)
Q Consensus 316 ~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y 395 (438)
+++|.+.|||+|++|| ||||+|..+|+.+|+.||||+..|+||+++.++.+.+++.++.++..|++|+|+.-+.+||.
T Consensus 223 q~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaaq~kamkqvag~~klelaq~revaafaqfgs- 300 (340)
T KOG1353 223 QAGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSLKLELAQYREVAAFAQFGS- 300 (340)
T ss_pred CCCCEEEECCCCEEEE-CCHHHHHHHHHHHCCCHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 5666246625432455-32567778887715633424205744115467788999873042237877888999987435-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4699989999999999999983599888999
Q gi|254780684|r 396 RPGVDLILDKAVHQVPIIYDFLKQSPSDLSS 426 (438)
Q Consensus 396 ~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~~ 426 (438)
++|..+++.+.++.++.+.|+|+.+-+-.
T Consensus 301 --dlda~tq~~l~rg~rltellkq~qy~p~~ 329 (340)
T KOG1353 301 --DLDAATQQLLNRGVRLTELLKQGQYAPLA 329 (340)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf --30478999997606799998457889821
No 59
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.3e-36 Score=285.97 Aligned_cols=297 Identities=24% Similarity=0.309 Sum_probs=224.2
Q ss_pred CCEEEEEECC-CCCCCCCCCEEEECC-CCEEECCHHH--HHHHHHHHHHH---------CCCCCCCCCCCEEEEECCCCC
Q ss_conf 9979999804-855746788899728-8555246668--86543077630---------478877755530121125433
Q gi|254780684|r 67 LDIVYICPVG-IGEEISLGDLVFHWG-RFRISPSACW--CGRVINALGKP---------IDGDDSLGKGDLSMEIMSKVP 133 (438)
Q Consensus 67 ~~~~~l~~~~-~~~gI~~G~~V~~~g-~~~i~vG~~l--LGRViD~lG~P---------lDg~~~l~~~~~~~~i~~~~p 133 (438)
.+.+++.+-. .-.+++.||.|.-.- ++. -|+.. |=+|-...|.+ .|...|+
T Consensus 77 ~dDiYVS~sqIrrf~LR~GD~V~G~vR~pk--e~Ery~aLl~V~~VNg~~pe~~~~r~~F~~LTPi-------------- 140 (416)
T PRK09376 77 PDDIYVSPSQIRRFNLRTGDTVEGKIRPPK--EGERYFALLKVETVNGEDPEKARNRILFENLTPL-------------- 140 (416)
T ss_pred CCCEEECHHHHHHHCCCCCCEEEEEEECCC--CCCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCC--------------
T ss_conf 888336899999809988888999886898--8887743377632289398996573540148777--------------
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 30001331-10011124587520022358503752667889999999987----40789838993124652238899998
Q gi|254780684|r 134 PAMNRQRV-EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA----RSDCFDKVIISLVGERGREVREFIED 208 (438)
Q Consensus 134 ~p~~R~~i-~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~alIGeR~rev~efi~~ 208 (438)
.|.+|-.. +++-+.--|+||.+.|||+|||-+|.|++.+|||+||..|| .|+.....++.||+||..||.+|.+.
T Consensus 141 ~P~erl~LE~~~~~~s~RiiDL~aPIGkGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDERPEEVTdm~r~ 220 (416)
T PRK09376 141 YPNERLKLETGTEDLSTRVIDLVAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRS 220 (416)
T ss_pred CCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 97223114568876540021100541358500375699875479999999999856997199999904893477787750
Q ss_pred HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 64277553289841577880344444456777888864267988999709899999987665404778432366324554
Q gi|254780684|r 209 YLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFS 288 (438)
Q Consensus 209 ~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~ 288 (438)
..++ ||++|.|+||-.+...+..++.-|..+.++|+||++++||+||+|+||+.+....|+.-+..-=|..+ +
T Consensus 221 v~~e------V~aStfD~~~~~H~~vae~~lerAkRlvE~G~DVvillDSiTRLaRAyN~~~~~sGr~lsGG~D~~Al-~ 293 (416)
T PRK09376 221 VKGE------VVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANAL-H 293 (416)
T ss_pred CCEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-C
T ss_conf 4618------99977999878999999999999999987699789997315788888623469987754476577776-0
Q ss_pred HCCHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCH
Q ss_conf 2004444431136788523554333421-676420278999861260898704277589713114456400022120899
Q gi|254780684|r 289 ELPRLLERIGPSEKEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSA 367 (438)
Q Consensus 289 ~~~~l~ERag~~~~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~ 367 (438)
. |+-+=-|++..+++||+|.|.|.|++ |..|+|.|.+++++.-+.+++|||+|+++++|||||+.+|-+|--.-..++
T Consensus 294 ~-PKrfFGAARnie~GGSLTIiaTaLveTgSrMDdvIfeEfkgTgNmEl~Ldr~la~~RifPAIdi~~SgTRkEelLl~~ 372 (416)
T PRK09376 294 R-PKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSP 372 (416)
T ss_pred C-CHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCH
T ss_conf 5-567641002677675177877777526862538999985157845999876677578864013335777257653799
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780684|r 368 DEKKLVSSLTHLIHRFEETR 387 (438)
Q Consensus 368 ~~~~~~~~~~~~l~~y~~~~ 387 (438)
++.+....+|+.++.....+
T Consensus 373 ~e~~~~~~lRr~l~~~~~~e 392 (416)
T PRK09376 373 EELQKVWILRKILSPMDEVE 392 (416)
T ss_pred HHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999871599799
No 60
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=3e-33 Score=261.55 Aligned_cols=243 Identities=26% Similarity=0.367 Sum_probs=205.9
Q ss_pred CCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 3330001331-10011124587520022358503752667889999999987----407898389931246522388999
Q gi|254780684|r 132 VPPAMNRQRV-EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA----RSDCFDKVIISLVGERGREVREFI 206 (438)
Q Consensus 132 ~p~p~~R~~i-~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~alIGeR~rev~efi 206 (438)
|..|.+|-.. ++|-..--|+||.+.|||||||-+|.+++..|||+||..|+ .|+.....++.||.||..||.+|.
T Consensus 381 p~~P~erl~le~~~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlLiDERPEEVTdm~ 460 (667)
T PRK12678 381 PLYPNERLRLETEPNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQ 460 (667)
T ss_pred CCCCCCEEECCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 78986422334677653222301113567884546757997872599999999998569972899997378851566766
Q ss_pred HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCC-----
Q ss_conf 986427755328984157788034444445677788886426798899970989999998766540477843236-----
Q gi|254780684|r 207 EDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARG----- 281 (438)
Q Consensus 207 ~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~g----- 281 (438)
....++ ||++|.|+||-.+...+..++--|..+.++|+||++++|||||+|+||+-..-..|++-+..-
T Consensus 461 r~v~ge------ViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~sGr~lsGGvD~~Al 534 (667)
T PRK12678 461 RSVKGE------VIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTAL 534 (667)
T ss_pred HCCCEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 404606------99866889888899999999999999875699779996406688887604469987734676486766
Q ss_pred CCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 63245542004444431136788523554333421-67642027899986126089870427758971311445640002
Q gi|254780684|r 282 YPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL 360 (438)
Q Consensus 282 yp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~ 360 (438)
|||--|. -|++..+++||+|+|.|.|++ |.-|++.|..++++.-...++|||+|+++.+|||||+..|-+|-
T Consensus 535 ~~PKrff-------GAARnie~GGSLTIlaTaLveTGSrmDevIfeEFKGTGNmEl~LdR~la~~RifPAidi~~SgTR~ 607 (667)
T PRK12678 535 YPPKRFF-------GAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKRVFPAVDVNPSGTRK 607 (667)
T ss_pred HCHHHHH-------HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCH
T ss_conf 0107776-------777524767447675445530465067889988537664288862335645565311344577506
Q ss_pred CHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 212089999999999999999999999
Q gi|254780684|r 361 ADKAWSADEKKLVSSLTHLIHRFEETR 387 (438)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~y~~~~ 387 (438)
-.-..++++.+....+|+.|+.....+
T Consensus 608 eelLl~~~e~~~~~~lRr~l~~~~~~~ 634 (667)
T PRK12678 608 EELLLSPDELAIVHKLRRVLSGLDSQQ 634 (667)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 765379999999999999872599899
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=3.9e-32 Score=253.42 Aligned_cols=228 Identities=28% Similarity=0.405 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 24587520022358503752667889999999987----40789838993124652238899998642775532898415
Q gi|254780684|r 148 GIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA----RSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVAT 223 (438)
Q Consensus 148 GIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t 223 (438)
--|+||.+.|||+|||-+|.|++..|||+||..|| .|......++.||.||..||.++.+...++ ||++|
T Consensus 160 s~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~ge------ViaST 233 (422)
T COG1158 160 STRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVKGE------VVAST 233 (422)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCE------EEEEC
T ss_conf 266766526567884656866987873389999999986379964999999347806777788752406------98644
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCC
Q ss_conf 77880344444456777888864267988999709899999987665404778432366324554200444443113678
Q gi|254780684|r 224 SDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKE 303 (438)
Q Consensus 224 ~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~ 303 (438)
.|+||....+.+.+.+--|...-++|+||++++||+||.|+||+-+.-..|+.-+. |--+.-++.--+++ -|++..++
T Consensus 234 FDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsG-GvD~nAL~~PKrFF-GAARNIEe 311 (422)
T COG1158 234 FDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSG-GVDANALHRPKRFF-GAARNIEE 311 (422)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECC-CCCHHHHCCCHHHH-HHHHCCCC
T ss_conf 88860546899999999999888717868999656778998853667997774048-73856604835542-12205545
Q ss_pred CCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 8523554333421-676420278999861260898704277589713114456400022120899999999999999999
Q gi|254780684|r 304 KGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHR 382 (438)
Q Consensus 304 ~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~ 382 (438)
+||+|.|.|.+++ |..|+|-|..++++.-+..++|||+||++++|||||+.+|-+|--.-..++++.+..-.+|++++.
T Consensus 312 GGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRkEeLLl~~~~l~k~w~lRr~l~~ 391 (422)
T COG1158 312 GGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSP 391 (422)
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 86341111124414775112025342577750788601344412453020356776157654899999999999997367
Q ss_pred H
Q ss_conf 9
Q gi|254780684|r 383 F 383 (438)
Q Consensus 383 y 383 (438)
-
T Consensus 392 m 392 (422)
T COG1158 392 M 392 (422)
T ss_pred C
T ss_conf 8
No 62
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.94 E-value=4.5e-25 Score=201.88 Aligned_cols=157 Identities=34% Similarity=0.468 Sum_probs=145.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 3752667889999999987407--89838993124652238899998642-77553289841577880344444456777
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSD--CFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVT 240 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~ 240 (438)
++|||++|+|||+|+.+++++. ..+.|||+.++|+.+++.++++.+.. ..++++.++.+++++++.+++. +
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 75 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL------S 75 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH------H
T ss_conf 8999899998999999999998763997999986664489999999862246713079993599976999999------9
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 88886426798899970989999998766540477843236632455420044444311367885235543334216764
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~ 320 (438)
++|+|++++++||+++||+|+|++|+||+ +.|||+.++..+++|+|||+ +++||.|++..+..||.
T Consensus 76 ~~~~~~~~~~~vliiiDSit~~~~a~~e~---------~~g~~~~v~~~~~~L~~~Ak-----~~~itvi~i~~v~~d~~ 141 (165)
T cd01120 76 KAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR-----KGGVTVIFTLQVPSGDK 141 (165)
T ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHHHH-----CCCCEEEEEEEEECCCC
T ss_conf 99999986997799992889988774001---------58867899999999999997-----79828999998433778
Q ss_pred CCH----HHHHHHHHCCCEEEEEH
Q ss_conf 202----78999861260898704
Q gi|254780684|r 321 NDP----IADSVRSILDGHIVLNR 340 (438)
Q Consensus 321 ~~p----i~~~~~~i~DG~i~L~r 340 (438)
++| +++++.+++|+||+|+|
T Consensus 142 ~~~~~~~g~~~l~~~~d~~i~L~r 165 (165)
T cd01120 142 GDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred CCCCCCCHHHHHHHHCCEEEEEEC
T ss_conf 997725388888364266999839
No 63
>TIGR00767 rho transcription termination factor Rho; InterPro: IPR004665 Members of this family have a related but highly variable long, highly charged insert near the amino end. The proteins differ in the specificity of RNA binding.; GO: 0003715 transcription termination factor activity, 0005524 ATP binding, 0006353 transcription termination.
Probab=99.81 E-value=1.8e-18 Score=153.67 Aligned_cols=240 Identities=25% Similarity=0.376 Sum_probs=207.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 10011124587520022358503752667889999999987----40789838993124652238899998642775532
Q gi|254780684|r 142 EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA----RSDCFDKVIISLVGERGREVREFIEDYLGDNLKKS 217 (438)
Q Consensus 142 ~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~t 217 (438)
.++-...-+++|.+.|+|+|||..|.+++..|||+++..++ .+......++.++.||..|+.++.....++
T Consensus 154 ~~~~~~~~~~~~~~~p~g~g~~~l~~~pp~~g~~~~~~~~~~~~~~~~p~~~l~~~l~d~~p~~~~~~~~~~~g~----- 228 (420)
T TIGR00767 154 TDPEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIANAITRNHPEVELIVLLIDERPEEVTDLQRSVKGE----- 228 (420)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHH-----
T ss_conf 751146778887651036775303651775442688888887763268743799886336622567777764212-----
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHH
Q ss_conf 89841577880344444456777888864267988999709899999987665404778432366324554200444443
Q gi|254780684|r 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERI 297 (438)
Q Consensus 218 vvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERa 297 (438)
++.++.|+||......+...+.-|....+.+++|++++|++||+++|+..+.-..|+.-+. |.....++.-.+++--+
T Consensus 229 -~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~p~~g~~l~g-g~~~~~~~~p~~~~g~~ 306 (420)
T TIGR00767 229 -VVASTFDEPPSRHVQVAELVLEKAKRLVEHKKDVVILLDSITRLARAYNTVTPPSGKVLSG-GVDANALHRPKRFFGAA 306 (420)
T ss_pred -HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEEC-CCCHHHHCCCHHHHHHH
T ss_conf -3210013441012468899999888876325634774023567666541036666632215-64501201414553001
Q ss_pred HCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHH
Q ss_conf 1136788523554333421-676420278999861260898704277589713114456400022120899999999999
Q gi|254780684|r 298 GPSEKEKGNITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSL 376 (438)
Q Consensus 298 g~~~~~~GSiT~~~~v~~~-~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~ 376 (438)
+..+.+||+|.+.+.+++ |..+++.+.+...+.-+..+.|+|.++++..|||+|+..|-+|--.-...+++....-.+
T Consensus 307 -~~~~~gg~l~~~~~~~~~~g~~~d~~~~~~~~g~g~~~~~l~~~~~~~~~~p~~~~~~~g~~~~~~l~~~~~~~~~~~~ 385 (420)
T TIGR00767 307 -RNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNLELHLDRKLADRRLFPAIDIKKSGTRKEELLLSPEELQKLWLL 385 (420)
T ss_pred -CCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHH
T ss_conf -0224665222210012313651013444432277750111001333211022101234565212320377888899999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780684|r 377 THLIHRFEETRDI 389 (438)
Q Consensus 377 ~~~l~~y~~~~~l 389 (438)
++.++.....+.+
T Consensus 386 ~~~~~~~~~~~~~ 398 (420)
T TIGR00767 386 RKVLSPLDDVEAL 398 (420)
T ss_pred HHHHCCCCHHHHH
T ss_conf 8874044505789
No 64
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.29 E-value=1.5e-05 Score=59.49 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=116.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHH--
Q ss_conf 0013311001112458752002--235850375266788999999998740--7898389931246522388999986--
Q gi|254780684|r 136 MNRQRVEKGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARS--DCFDKVIISLVGERGREVREFIEDY-- 209 (438)
Q Consensus 136 ~~R~~i~e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~--~~~dv~V~alIGeR~rev~efi~~~-- 209 (438)
+.....++.+.|||.-+|.|+- +-+|--.+|.|++|+|||+|..+.+.. .....|+|..--|....+..-.+.+
T Consensus 239 ~~~~~~~~rv~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~G~ 318 (501)
T PRK09302 239 LTQRSSNERISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSWGI 318 (501)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCC
T ss_conf 35666520004797327887259975894699988999888999999999998659908999996799999999997399
Q ss_pred -HCCCCCC-EEEEE-E-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf -4277553-28984-1-577880344444456777888864267988999709899999987665404778432366324
Q gi|254780684|r 210 -LGDNLKK-SVVVV-A-TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTS 285 (438)
Q Consensus 210 -~~~~l~~-tvvv~-~-t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~ 285 (438)
+....+. ...+. . +...+|.+. +..+=+--.+.+-+ .+++||++-|..+..+-. |...
T Consensus 319 dl~~~~~~G~l~i~~~~p~~~~~~e~------~~~i~~~v~~~~~~-rVvIDsls~~~~~~~~~~-----------~r~~ 380 (501)
T PRK09302 319 DLEEMERKGLLKIICARPESTGLEDH------LQIIKREIEEFKPS-RVAVDPLSALARGGSLNE-----------FRQF 380 (501)
T ss_pred CHHHHHHCCCEEEEEECCCCCCHHHH------HHHHHHHHHHCCCC-EEEECCHHHHHHHCCHHH-----------HHHH
T ss_conf 84888748947999837000598999------99999999972998-999958068765268599-----------9999
Q ss_pred HHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCC-CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCC
Q ss_conf 55420044444311367885235543334216764-2027899986126089870427758971311445640
Q gi|254780684|r 286 VFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH-NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASV 357 (438)
Q Consensus 286 ~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~-~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~ 357 (438)
+. .+.+.+ +.. .+|.+.|.++++..- ..+-+..+-++.|+-|.|..--.+-..+=+|.++++-
T Consensus 381 l~-~L~~~L------k~~--gvT~l~t~~~~~~~g~~~~t~~~iS~l~D~ii~Lry~E~~g~l~R~i~VlK~R 444 (501)
T PRK09302 381 VI-RLTDYL------KQE--EITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALNVLKMR 444 (501)
T ss_pred HH-HHHHHH------HHC--CCEEEEEEECCCCCCCCCCCCCCHHHHCCEEEEEEEEEECCEEEEEEEEEEEC
T ss_conf 99-999999------768--97899976123556766447666001112478999871389998989999936
No 65
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.27 E-value=2.1e-05 Score=58.43 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=100.8
Q ss_pred CCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHCCCC-
Q ss_conf 311001112458752002--235850375266788999999998740--789838993124652238899998642775-
Q gi|254780684|r 140 RVEKGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARS--DCFDKVIISLVGERGREVREFIEDYLGDNL- 214 (438)
Q Consensus 140 ~i~e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~--~~~dv~V~alIGeR~rev~efi~~~~~~~l- 214 (438)
.-+|.+.|||..+|.++- +-+|.-++|.|++|+|||+|..+++.+ .+...|+|...-|..++ ++++...-++
T Consensus 9 ~~~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~---~~~~~~~~g~d 85 (241)
T PRK06067 9 EEKEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKS---YLKQMESLKLD 85 (241)
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHH---HHHHHHHCCCC
T ss_conf 314525668755786506997799089998079988799999999999867982999994289999---99999983998
Q ss_pred ------CCEEEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf ------53289841--5778803444444567778888642679889997098999999876654047784323663245
Q gi|254780684|r 215 ------KKSVVVVA--TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSV 286 (438)
Q Consensus 215 ------~~tvvv~~--t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~ 286 (438)
+....+.. +....+... .....--.+.+.-+..+.++ +++||+|-++....+-.+. ..
T Consensus 86 l~~~~~~G~L~i~~~~~~~~~~~~~-~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~~~~------------~~ 151 (241)
T PRK06067 86 ISDFFIWGYLRIFPLNTEGFEWNSE-LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASEDDVL------------NF 151 (241)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHHHHH------------HH
T ss_conf 5999866970578324111342155-68999999999999719989-9992801754138889999------------99
Q ss_pred HHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCC
Q ss_conf 542004444431136788523554333421676420278999861260898704277589713114456
Q gi|254780684|r 287 FSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLA 355 (438)
Q Consensus 287 ~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~ 355 (438)
+..+..|. .. | .|.+.|+.. +-+.+.......++.||-|.|+.........=.+.+.+
T Consensus 152 l~~l~~l~-------~~-g-~tvllt~~~--~~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K 209 (241)
T PRK06067 152 FTECKNLC-------DN-G-KTILITLHP--YAFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVK 209 (241)
T ss_pred HHHHHHHH-------HC-C-CEEEEEECC--CCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEE
T ss_conf 99999999-------68-9-889999056--76476643124899899999587843999999999999
No 66
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=98.24 E-value=2.2e-05 Score=58.23 Aligned_cols=189 Identities=17% Similarity=0.174 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHH-HHHC--CCCCEEEEECCCCCHHHHHHHHHHH-C-CC-CC-
Q ss_conf 1112458752002--235850375266788999999998-7407--8983899312465223889999864-2-77-55-
Q gi|254780684|r 145 FKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMF-ARSD--CFDKVIISLVGERGREVREFIEDYL-G-DN-LK- 215 (438)
Q Consensus 145 L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i-~~~~--~~dv~V~alIGeR~rev~efi~~~~-~-~~-l~- 215 (438)
+.|||..+|.++. +-+|--.+|.|++|+|||+|+.+. .+++ ....|+|...-|...++.+-.+.+- + +. ..
T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~ 80 (231)
T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEEE 80 (231)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHC
T ss_conf 98895568863169982996999985897259999999999999865896899981379999999999829985898646
Q ss_pred CEEEEEE-CCCCCHHH----HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHC
Q ss_conf 3289841-57788034----444445677788886426798899970989999998766540477843236632455420
Q gi|254780684|r 216 KSVVVVA-TSDESPIL----RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSEL 290 (438)
Q Consensus 216 ~tvvv~~-t~d~~~~~----r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~ 290 (438)
....+.. ..+..... +...--..-.+.++..+.+-+ .+++||+|-+.....+- .....+
T Consensus 81 g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~vVIDsit~l~~~~~~~---------------~~r~~l 144 (231)
T pfam06745 81 GKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK-RVVIDSITTLFYLLKPA---------------MAREIL 144 (231)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHCCCHH---------------HHHHHH
T ss_conf 96789862544222100112279999999999999971998-89997641640058899---------------999999
Q ss_pred CHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCC
Q ss_conf 0444443113678852355433342167642027899986126089870427758971311445
Q gi|254780684|r 291 PRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPL 354 (438)
Q Consensus 291 ~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~ 354 (438)
-.|.... ... -+|.+.|..+...+-...-.....++.||-|.|+..-.+....=.+-+.
T Consensus 145 ~~l~~~l---k~~--g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~ 203 (231)
T pfam06745 145 RRLKRVL---KKL--GVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEIEGELVRTIEIV 203 (231)
T ss_pred HHHHHHH---HHC--CCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 9999999---976--9919999821257776567630111003699999882499899999999
No 67
>PRK04328 hypothetical protein; Provisional
Probab=98.05 E-value=5.3e-05 Score=55.44 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHH-HHC-CCCCEEEEECCCCCHHHHHHHHHHH-C-CC-CC
Q ss_conf 001112458752002--2358503752667889999999987-407-8983899312465223889999864-2-77-55
Q gi|254780684|r 143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFA-RSD-CFDKVIISLVGERGREVREFIEDYL-G-DN-LK 215 (438)
Q Consensus 143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~-~~~-~~dv~V~alIGeR~rev~efi~~~~-~-~~-l~ 215 (438)
|.+.|||.-+|.++. +-+|.-.+|.|++|+|||+|+.+.+ +++ +...|+|...-|...++.+-...+- . +. .+
T Consensus 4 eRv~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~~~~l~~~~~~~G~d~~~~~~ 83 (250)
T PRK04328 4 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEE 83 (250)
T ss_pred CEECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHH
T ss_conf 11035856678751599879969999828999989999999999987699779999727999999999980998689865
Q ss_pred C-EEEEEE--CCCC---CHHHHHHHH------HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3-289841--5778---803444444------567778888642679889997098999999876654047784323663
Q gi|254780684|r 216 K-SVVVVA--TSDE---SPILRKMAP------LTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYP 283 (438)
Q Consensus 216 ~-tvvv~~--t~d~---~~~~r~~a~------~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp 283 (438)
. ...+.. +..- ....++... ...-.+.+..++.+-+. +++||+|.+... .+-..+
T Consensus 84 ~g~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~r-vVIDSit~l~~~---------~~~~~r--- 150 (250)
T PRK04328 84 EGKFAIVDAFTGGIGEAAEREKYVVKDPDDVRELIDVLRQAIRDIGAKR-VVIDSVSTLYLT---------KPAVAR--- 150 (250)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCE-EEEECCHHHHHC---------CHHHHH---
T ss_conf 6977998512333342000001013685359999999999998518988-999370787745---------858899---
Q ss_pred HHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCC--CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCC
Q ss_conf 245542004444431136788523554333421676--42027899986126089870427758971311445
Q gi|254780684|r 284 TSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDN--HNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPL 354 (438)
Q Consensus 284 ~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd--~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~ 354 (438)
.....+.+.+.+. -+|.+.+..+..++ +..|- +-++.||-|.|...-.+....-.+.+.
T Consensus 151 -~~l~~l~~~l~~~--------g~Ttll~~e~~~~~~~~~~~~---ve~~~DgvI~L~~~~~~~~~~R~l~I~ 211 (250)
T PRK04328 151 -SIVMQLKRVLAGL--------GCTSIFVSQVSVGERGFGGPG---VEHAVDGIIRLDLDEIDGELKRSLIVW 211 (250)
T ss_pred -HHHHHHHHHHHHC--------CCEEEEEECCCCCCCCCCCCC---EEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf -9999999999868--------986999971003656667786---589998999988871399799999999
No 68
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.05 E-value=0.00015 Score=52.10 Aligned_cols=190 Identities=21% Similarity=0.179 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHH-HHCC-CCCEEEEECCCCCHHHHHHHHHHHCC---CCC
Q ss_conf 001112458752002--2358503752667889999999987-4078-98389931246522388999986427---755
Q gi|254780684|r 143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFA-RSDC-FDKVIISLVGERGREVREFIEDYLGD---NLK 215 (438)
Q Consensus 143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~-~~~~-~dv~V~alIGeR~rev~efi~~~~~~---~l~ 215 (438)
+.+.|||.-+|-++- +-+|.-+.|.|++|+|||++..+.+ +.++ ...|+|...-|...++.+-...+--+ ..+
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~ 82 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIE 82 (260)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHH
T ss_conf 65689974188883689889978999938998689999999997762698589999206989999999880997789754
Q ss_pred --CEEEEEECCCCCHHH------HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf --328984157788034------444445677788886426798899970989999998766540477843236632455
Q gi|254780684|r 216 --KSVVVVATSDESPIL------RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVF 287 (438)
Q Consensus 216 --~tvvv~~t~d~~~~~------r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~ 287 (438)
+-.++-+.....+.. -.......-.+-+.+.+.+ ...+++||+|.+......= ....
T Consensus 83 ~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~--------------~~~r 147 (260)
T COG0467 83 KGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDP--------------ALVR 147 (260)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCH--------------HHHH
T ss_conf 440687631211125420104665228999999999998628-9889996630776652782--------------5789
Q ss_pred HHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCC-CCCCC
Q ss_conf 42004444431136788523554333421676420278999861260898704277589713-11445
Q gi|254780684|r 288 SELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYP-PVDPL 354 (438)
Q Consensus 288 ~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~P-aid~~ 354 (438)
..+-.+. +...+.+ .|++.+.........+. ...-++.||.|.|+.....-+.+- .+.+.
T Consensus 148 ~~~~~l~----~~~~~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~ 208 (260)
T COG0467 148 RILLLLK----RFLKKLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRIL 208 (260)
T ss_pred HHHHHHH----HHHHHCC-EEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 9999999----8765068-48999974433466656--614216899999977722572488899998
No 69
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.04 E-value=3.5e-05 Score=56.76 Aligned_cols=145 Identities=24% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 585037526678899999999874078983-8993124652238899998642775532898415778803444444567
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDK-VIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv-~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
+++.+.|+|++|+|||+++..++++..... .|+....+...+...+... ......+.....+...+...
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 70 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL----------LIIVGGKKASGSGELRLRLA 70 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH----------HHHHCCCCCCCCHHHHHHHH
T ss_conf 99789999999702999999999872668996899875998988898765----------30001122105199999999
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf 77888864267988999709899999987665404778432366324554200444443113678852355433342167
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGD 318 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~d 318 (438)
.+.|++.. ..++++|++.++.............. .+..........+..+ .+-..
T Consensus 71 ~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~vi---~~~n~ 125 (148)
T smart00382 71 LALARKLK----PDVLILDEITSLLDAEQEALLLLLEE------------------LRLLLLLKSEKNLTVI---LTTND 125 (148)
T ss_pred HHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHH------------------HHHHCCCCCCCCEEEE---EEECC
T ss_conf 99998449----98999827502147620799999999------------------9985176578998999---95699
Q ss_pred CCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 6420278999861260898704
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r 340 (438)
...+++..++...|.++.+.+
T Consensus 126 -~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 126 -EKDLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred -CCCCCHHHHCCCCCEEEEEEC
T ss_conf -522498770744787999828
No 70
>pfam02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain. This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.
Probab=98.04 E-value=2.9e-05 Score=57.38 Aligned_cols=66 Identities=21% Similarity=0.154 Sum_probs=50.4
Q ss_pred EEEEECCEEEEECCCC-CCCCCCEEEEE--CCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC
Q ss_conf 9999525899982688-88735189995--699607999997419979999804855746788899728
Q gi|254780684|r 26 ISSITSVYYTVTCLSQ-YVCLGDFVVHQ--GKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWG 91 (438)
Q Consensus 26 V~~V~G~ii~v~Gl~~-~v~iGelv~i~--~~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g 91 (438)
|+++.|+++++..... ...+.+.+..+ ..+..++++|++|+++.+.+++|++++||++|++|.+||
T Consensus 1 v~~v~G~Vv~v~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~l~~~~V~~i~l~~t~Gl~~G~~V~~TG 69 (69)
T pfam02874 1 IVQVIGPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLSRGDEVKRTG 69 (69)
T ss_pred CEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEECCC
T ss_conf 979998999969695237885001597300378837998752489839999976867753899998295
No 71
>pfam00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain.
Probab=97.94 E-value=6.2e-05 Score=54.98 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999985234469998999999999999998359988899
Q gi|254780684|r 370 KKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLS 425 (438)
Q Consensus 370 ~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~e~~ 425 (438)
+++++.++..|++|+|++++++|.| ...+++.....+.++++|++||+||.+.+.
T Consensus 1 ~~v~~~~~~~Laqy~eL~~~~~~~G-~d~L~~~~k~~l~~~~~~~~~L~Q~~~~p~ 55 (110)
T pfam00306 1 KQVAGQLKLELAQYRELQAIVQLVG-EDALSEEDKLTLERARRIEEFLKQNQYSPE 55 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9247999999998999999998718-310489999999999999999827446887
No 72
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.92 E-value=8.9e-05 Score=53.82 Aligned_cols=179 Identities=21% Similarity=0.250 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHC---CC
Q ss_conf 11001112458752002--2358503752667889999999987407--89838993124652238899998642---77
Q gi|254780684|r 141 VEKGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARSD--CFDKVIISLVGERGREVREFIEDYLG---DN 213 (438)
Q Consensus 141 i~e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR~rev~efi~~~~~---~~ 213 (438)
+.|.+.||+..+|-++- +-+|.=..|+|++|+|||+|+.+++.+. ....|+|. -+|- -....|. +..+ +.
T Consensus 1 ~~erisTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYi-dtE~-~~~er~~-qi~~~~~~~ 77 (224)
T PRK09361 1 IEELLPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYI-DTEG-LSPERFK-QIAGEDFEE 77 (224)
T ss_pred CCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE-CCCC-CCHHHHH-HHHCCCHHH
T ss_conf 985303797899986269988887999989999859999999999999749909996-7876-7889999-985657345
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHH
Q ss_conf 55328984157788034444445677788886426798899970989999998766540477843236632455420044
Q gi|254780684|r 214 LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRL 293 (438)
Q Consensus 214 l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l 293 (438)
+.+.+.+....+-... ..++..++.+..+ +--|+++||++.+-++..+ .++.+.+ ...+-..+..|
T Consensus 78 ~~~~i~~~~~~~~~~~------~~~i~~~~~~~~~-~~~lvVIDSi~~~~~~e~~----~~~~~~~---~~~l~~~~~~L 143 (224)
T PRK09361 78 LLSNIIIFEPSSFEEQ------REAIQKAEKIAKE-NVGLIVLDSATSLYRLELD----DNDNSKL---NRELGKQISHL 143 (224)
T ss_pred HHHCCEEECCCCHHHH------HHHHHHHHHHHHC-CCCEEEEECCHHHEEHHCC----CCCCHHH---HHHHHHHHHHH
T ss_conf 4206147247988999------9999999987505-8738999623010000014----5765899---99999999999
Q ss_pred HHHHHCCCCCCCCEEEEEE--EEECCC-CCCCHH-HHHHHHHCCCEEEEEHH
Q ss_conf 4443113678852355433--342167-642027-89998612608987042
Q gi|254780684|r 294 LERIGPSEKEKGNITAVIS--VLVDGD-NHNDPI-ADSVRSILDGHIVLNRS 341 (438)
Q Consensus 294 ~ERag~~~~~~GSiT~~~~--v~~~~d-d~~~pi-~~~~~~i~DG~i~L~r~ 341 (438)
..=|. +--+|.+.| |....+ +.-.|. +..+..+.|.-|.|++.
T Consensus 144 ~~~a~-----~~~~~vvl~nqV~~~~~~~~~~paGg~~l~h~~d~~l~le~~ 190 (224)
T PRK09361 144 LSLAR-----KHNIAVVITNQVYSDIDSDGLRPLGGHTLEHWSKAILRLEKL 190 (224)
T ss_pred HHHHH-----HCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEC
T ss_conf 99999-----719869999668852676544446541222105799999625
No 73
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.86 E-value=0.00042 Score=48.94 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHH-HHHC-C-CCCEEEEECCCCCHHHHHHHHHHH-C-CC-C
Q ss_conf 001112458752002--235850375266788999999998-7407-8-983899312465223889999864-2-77-5
Q gi|254780684|r 143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMF-ARSD-C-FDKVIISLVGERGREVREFIEDYL-G-DN-L 214 (438)
Q Consensus 143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i-~~~~-~-~dv~V~alIGeR~rev~efi~~~~-~-~~-l 214 (438)
+.+.|||.-+|-++- +-+|.-.+|-|++|+|||+|..++ .+++ + ...|+|....|...++.+..+.+- . ++ .
T Consensus 4 eRi~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~~~~ 83 (501)
T PRK09302 4 EKLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQKLI 83 (501)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 42144871157785489889977999838999999999999999988559978999857999999999998499868973
Q ss_pred C-CEEEEEECCCCCHHHHHHHH----HHHHHHHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf 5-32898415778803444444----56777888864267988999709899999
Q gi|254780684|r 215 K-KSVVVVATSDESPILRKMAP----LTAVTIAEYFSSKGDNVLLILDSITRFAH 264 (438)
Q Consensus 215 ~-~tvvv~~t~d~~~~~r~~a~----~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~ 264 (438)
+ ....+..-+-++-....... -.--.|-+.-+..+-+ .+++||+|-...
T Consensus 84 ~~~~l~i~d~~~~~~~~~~~~~~dL~~l~~~I~~~v~~~~~~-RvViDSlt~l~~ 137 (501)
T PRK09302 84 DEGKLFILDASPDPSEQEEAGEYDLSALIERIEYAIRKIKAK-RVVIDSIEALFQ 137 (501)
T ss_pred HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEECCHHHHHH
T ss_conf 268389996156743111334476899999999999971999-999999789987
No 74
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.66 E-value=0.00095 Score=46.32 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEECCCC--CHHHHHHHHHHHCCCCCCEE
Q ss_conf 1112458752002--23585037526678899999999874078--983899312465--22388999986427755328
Q gi|254780684|r 145 FKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISLVGER--GREVREFIEDYLGDNLKKSV 218 (438)
Q Consensus 145 L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~alIGeR--~rev~efi~~~~~~~l~~tv 218 (438)
+.||+..+|-++- +.+|.=..|.|.+|+|||+|+-+++.+.. ...++|. -+|- ...+.++..... +.+.+.+
T Consensus 1 IsTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yi-dtE~~~~er~~qi~~~~~-~~~~~~i 78 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI-DTEGLSSERFRQIAGDRP-ERAASSI 78 (218)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-ECCCCCCHHHHHHHHHHH-HHHHCCC
T ss_conf 99880789998569987887999989999849999999999986369869999-665567699999987536-6653051
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHH
Q ss_conf 98415778803444444567778888642679889997098999999876654047784323663245542004444431
Q gi|254780684|r 219 VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIG 298 (438)
Q Consensus 219 vv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag 298 (438)
.+....+-.. ........+.+.++. --|+++||++.+-++. +.. .|+.....-.+...+..|..=|-
T Consensus 79 ~v~~~~~~~~------~~~~i~~~~~~~~~~-~~lvViDSi~tl~~~e--~~~----~~~~~~~~r~l~~~~~~L~~~Ak 145 (218)
T cd01394 79 IVFEPMDFNE------QGRAIQETETFADEK-VDLVVVDSATALYRLE--LGD----DDTTIKNYRELAKQLTFLLWLAR 145 (218)
T ss_pred EEECCCCHHH------HHHHHHHHHHHHHCC-CCEEEEECCHHHHHHH--CCC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 4626787688------999999999764147-7299991404554554--068----96479999999999999999987
Q ss_pred CCCCCCCCEEEEEE--EEECCC-CCCCHHH-HHHHHHCCCEEEEEHH
Q ss_conf 13678852355433--342167-6420278-9998612608987042
Q gi|254780684|r 299 PSEKEKGNITAVIS--VLVDGD-NHNDPIA-DSVRSILDGHIVLNRS 341 (438)
Q Consensus 299 ~~~~~~GSiT~~~~--v~~~~d-d~~~pi~-~~~~~i~DG~i~L~r~ 341 (438)
.-.++.+.+ |..+.+ +.-.|+. ..+-.+.|.-++|++.
T Consensus 146 -----~~~~~vil~nqVt~~~~~~~~~p~GG~~LeH~vd~vl~~e~~ 187 (218)
T cd01394 146 -----KHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKL 187 (218)
T ss_pred -----HCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHCCEEEEEECC
T ss_conf -----669889999215884577756556720414110289999848
No 75
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.59 E-value=0.0011 Score=45.94 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=80.0
Q ss_pred EEEECCCCCCHHHHHHHHH-HH-CCCCCEEEEECCCCCHHHHHHHHHHH-C-CC-CC-CEEEEEEC--CCCCHHHHHHHH
Q ss_conf 3752667889999999987-40-78983899312465223889999864-2-77-55-32898415--778803444444
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFA-RS-DCFDKVIISLVGERGREVREFIEDYL-G-DN-LK-KSVVVVAT--SDESPILRKMAP 235 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~-~~-~~~dv~V~alIGeR~rev~efi~~~~-~-~~-l~-~tvvv~~t--~d~~~~~r~~a~ 235 (438)
.+|-|++|+|||+|+.+++ ++ .+...|+|...-|...++.+-...+- . +. .. ....+... ....+.......
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 15876899999999999999998769978999950799999999998399858986458568996262002203332367
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 56777888864267988999709899999987665404778432366324554200444443113678852355433342
Q gi|254780684|r 236 LTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLV 315 (438)
Q Consensus 236 ~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~ 315 (438)
...-.+.+.-...+-++ +++||+|-+.... + ....-.++..+. .+.+ . -+|.+.+...
T Consensus 82 ~l~~~i~~~i~~~~~~~-vVIDSi~~l~~~~--------~----~~~~~~~~~l~~-~l~~-------~-~~t~ll~~e~ 139 (187)
T cd01124 82 ELIQRLKDAIEEFKAKR-VVIDSVSGLLLME--------Q----STARLEIRRLLF-ALKR-------F-GVTTLLTSEQ 139 (187)
T ss_pred HHHHHHHHHHHHHCCCE-EEECCHHHHHHCC--------H----HHHHHHHHHHHH-HHHH-------C-CCCEEEEEEE
T ss_conf 89999999999849989-9994868875256--------6----668999999999-9997-------6-9968999974
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHC
Q ss_conf 167642027899986126089870427758
Q gi|254780684|r 316 DGDNHNDPIADSVRSILDGHIVLNRSLAEE 345 (438)
Q Consensus 316 ~~dd~~~pi~~~~~~i~DG~i~L~r~la~~ 345 (438)
.+++-....+....++.||-|.|...--..
T Consensus 140 ~~~~~~~~~~~~~~~l~DgiI~L~~~~~~~ 169 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLRLDEEGG 169 (187)
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEEEEECCC
T ss_conf 256676678884779978999997880499
No 76
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00043 Score=48.86 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHCC--------CCCEEEEECCCCC---HHHHHHHHHHHC
Q ss_conf 1112458752002--23585037526678899999999874078--------9838993124652---238899998642
Q gi|254780684|r 145 FKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARSDC--------FDKVIISLVGERG---REVREFIEDYLG 211 (438)
Q Consensus 145 L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--------~dv~V~alIGeR~---rev~efi~~~~~ 211 (438)
|.||++.||.++- +-.|+=.-|+|.+|+|||+|+-+++-+.. ...+||.- .|.+ +.+.++.+....
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyId-tE~~f~~~Rl~qia~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID-TEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHHHHHHHCC
T ss_conf 988857899650799647879999999998499999999999842475367896299995-3677588999999997134
Q ss_pred --CC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf --77-5532898415778803444444567778888642679889997098999999
Q gi|254780684|r 212 --DN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHS 265 (438)
Q Consensus 212 --~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A 265 (438)
+. +++ +.++...|-.-.... -...-+++.+...--|+++||++-.-+.
T Consensus 80 ~~~~~l~~-i~~~~~~~~~~l~~~-----l~~l~~~l~~~~~v~LvVIDSia~l~r~ 130 (235)
T cd01123 80 DPEEVLDN-IYVARAYNSDHQLQL-----LEELEAILIESSRIKLVIVDSVTALFRA 130 (235)
T ss_pred CHHHHHCC-EEEECCCCHHHHHHH-----HHHHHHHHHCCCCCEEEEEEECHHHHHH
T ss_conf 72454225-479637999999999-----9999998730377239999610455566
No 77
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.39 E-value=0.0012 Score=45.48 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 1001112458752002---23585037526678899999999874078--983899312465223889999864277553
Q gi|254780684|r 142 EKGFKTGIRVIDIFTP---LCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISLVGERGREVREFIEDYLGDNLKK 216 (438)
Q Consensus 142 ~e~L~TGIr~ID~l~p---ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~alIGeR~rev~efi~~~~~~~l~~ 216 (438)
-+.+.||.-++|..+- +-+|.=.-|+|.+++|||+|+..++++++ ...|+|.= -|..-. .++.+.+ |++-
T Consensus 30 ~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD-~E~a~d-~~~a~~l---GVD~ 104 (322)
T pfam00154 30 VEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID-AEHALD-PVYAKKL---GVDI 104 (322)
T ss_pred CCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-HHHHCC-HHHHHHC---CCCH
T ss_conf 5446158089999875899778708999889877789999999999973499389985-366059-8899980---9880
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 28984157788034444445677788886426798899970989999
Q gi|254780684|r 217 SVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263 (438)
Q Consensus 217 tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a 263 (438)
.-++++..| ...-++.++|++...|.-.++++||+....
T Consensus 105 ~~l~~~qpd--------~~Eqal~i~~~li~~~~~~liViDSvaal~ 143 (322)
T pfam00154 105 DNLLVSQPD--------TGEQALEIADMLVRSGAVDLIVVDSVAALV 143 (322)
T ss_pred HHEEEECCC--------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 253897788--------399999999998537997659982534567
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.37 E-value=0.0022 Score=43.68 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=57.2
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 00223585037526678899999999874078983899312465223889999864277553289841577880344444
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMA 234 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a 234 (438)
++--++=.-+-++|++|||||||+..|++.++...+-+-++----.|+++.+++
T Consensus 46 ~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~sgvkdlr~ii~~-------------------------- 99 (726)
T PRK13341 46 AIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDA-------------------------- 99 (726)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH--------------------------
T ss_conf 997699982788897999999999999887488679985620377999999999--------------------------
Q ss_pred HHHHHHHHHH-HHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 4567778888-6426798899970989999998766
Q gi|254780684|r 235 PLTAVTIAEY-FSSKGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 235 ~~~a~~iAEy-fr~~G~~Vll~~Ds~tr~a~A~rei 269 (438)
|+. +...|++++|++|-+-||-.++-++
T Consensus 100 -------A~~~~~~~g~~tILFIDEIHRfNK~QQD~ 128 (726)
T PRK13341 100 -------AKERLERHGKRTILFIDEVHRFNKAQQDA 128 (726)
T ss_pred -------HHHHHHHCCCCEEEEEECHHHCCHHHHHH
T ss_conf -------99998745996599986254258878998
No 79
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.28 E-value=0.0019 Score=44.06 Aligned_cols=109 Identities=20% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCCHHHHHHHHHHHC-CC-CCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 1001112458752002---2358503752667889999999987407-89-83899312465223889999864277553
Q gi|254780684|r 142 EKGFKTGIRVIDIFTP---LCHGQRIGVFAGSGIGKSTLLSMFARSD-CF-DKVIISLVGERGREVREFIEDYLGDNLKK 216 (438)
Q Consensus 142 ~e~L~TGIr~ID~l~p---ig~GQR~gIfg~~GvGKt~Ll~~i~~~~-~~-dv~V~alIGeR~rev~efi~~~~~~~l~~ 216 (438)
-+.+.||.-.+|..+- +-+|.=.-|+|..++|||+|+-.+++++ +. ..|+|.=. |. .--.+|.+.+ +-..++
T Consensus 33 ~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDa-E~-a~d~~~a~~l-GVD~~~ 109 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA-EH-ALDPVYAKKL-GVDLDN 109 (325)
T ss_pred CCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH-HH-CCCHHHHHHC-CCCHHH
T ss_conf 53462681999999758996688089998898777999999999998735983999962-54-2598999980-998467
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 28984157788034444445677788886426798899970989999
Q gi|254780684|r 217 SVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263 (438)
Q Consensus 217 tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a 263 (438)
+++...| ...-++.++|.+...|.-.|+++||+....
T Consensus 110 --l~~~qp~--------~~Eq~l~i~~~li~s~~~dliViDSvaal~ 146 (325)
T cd00983 110 --LLISQPD--------TGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred --EEEECCC--------HHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf --5896663--------899999999997515887679981511236
No 80
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.14 E-value=0.0014 Score=45.02 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHCCC--------CCEEEEECCCCCHHHHHHHHHHHC---
Q ss_conf 1112458752002--235850375266788999999998740789--------838993124652238899998642---
Q gi|254780684|r 145 FKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARSDCF--------DKVIISLVGERGREVREFIEDYLG--- 211 (438)
Q Consensus 145 L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~--------dv~V~alIGeR~rev~efi~~~~~--- 211 (438)
+.||++.+|.++- +-.|+=.-|+|.+|+|||+|+.+++.+... ..+||.-. |..= -.+.++++..
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDt-E~~f-~~~rl~~i~~~~~ 78 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT-EGAF-RPERLVQLAVRFG 78 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCCC-CHHHHHHHHHHHC
T ss_conf 9887478998857998888399999999998999999999998542211699961999955-7753-1999999987603
Q ss_pred ---CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf ---7755328984157788034444445677788886426798899970989999
Q gi|254780684|r 212 ---DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263 (438)
Q Consensus 212 ---~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a 263 (438)
+.+...+.++...+ . .... ..+.-.+.+..+++--|+++||++-.-
T Consensus 79 ~~~~~~l~~i~~~~~~~-~-e~~~----~~~~~l~~~~~~~~v~liViDSi~al~ 127 (226)
T cd01393 79 LDPEEVLDNIYVARPYN-G-EQQL----EIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred CCHHHHHHHEEEECCCC-H-HHHH----HHHHHHHHHHHCCCCEEEEEECCCEEC
T ss_conf 26677643336843799-9-9999----999999987524784289993220011
No 81
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.13 E-value=0.014 Score=37.72 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHCCC------C-CCEEEEEEC----CC
Q ss_conf 35850375266788999999998740--78983899312465223889999864277------5-532898415----77
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARS--DCFDKVIISLVGERGREVREFIEDYLGDN------L-KKSVVVVAT----SD 225 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~--~~~dv~V~alIGeR~rev~efi~~~~~~~------l-~~tvvv~~t----~d 225 (438)
-+|.-++|-|++|+|||.+..+++-+ .+...|.|.-.-|.. .+|+++...-| . ....+++.- ++
T Consensus 22 p~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~---~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~ 98 (230)
T PRK08533 22 PFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTT---TEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCH---HHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCC
T ss_conf 8984899986899878999999999998789869999943899---9999999986998179975796799961343354
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCC
Q ss_conf 88034444445677788886426798899970989999998766540477843236632455420044444311367885
Q gi|254780684|r 226 ESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKG 305 (438)
Q Consensus 226 ~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~G 305 (438)
..... .+.. -+-+..+..++|| +++||+|-..... ..+..+...+. ++.+.. ..+.
T Consensus 99 ~~~~~----~~L~-~ll~~~~~~~~dv-IIIDSlS~l~~~~--------------~~~~~~~~~~~-~lk~l~---s~gk 154 (230)
T PRK08533 99 NSEKR----DFLD-KLMNTRRFYEKDV-VIIDSLSSLVSRD--------------ASEVQIRDLMA-FFKRIS---SLNK 154 (230)
T ss_pred HHHHH----HHHH-HHHHHHHHCCCCE-EEEECCHHHHHCC--------------CCHHHHHHHHH-HHHHHH---HCCC
T ss_conf 04578----9999-9973266437989-9990531885167--------------77899999999-999998---5898
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHC
Q ss_conf 2355433342167642027899986126089870427758
Q gi|254780684|r 306 NITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEE 345 (438)
Q Consensus 306 SiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~ 345 (438)
|.+.|+ +-+.+++....-++++-|++|.|+.+...-
T Consensus 155 --tIilTv--~p~~~~e~~l~~lrs~aDv~i~L~~~~vGg 190 (230)
T PRK08533 155 --VIILTA--NPKELPESVLLILRTASTILIRLEVKVFGG 190 (230)
T ss_pred --EEEEEE--CCCCCCHHHHHHHHEEEEEEEEEEEEECCC
T ss_conf --899995--633136245442041048999987361098
No 82
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.06 E-value=0.0036 Score=42.07 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=52.1
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH
Q ss_conf 87520022358503752667889999999987407898389931246522388999986427755328984157788034
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPIL 230 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~ 230 (438)
.+.-++--++=.-+.++|++|||||||+..|++..+....-+-++-..-.|+++.+++
T Consensus 27 ~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~~gv~dir~ii~~---------------------- 84 (417)
T PRK13342 27 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSAVTSGVKDLREVIEE---------------------- 84 (417)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH----------------------
T ss_conf 9999997699975998896999899999999998689889961410388999999999----------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 444445677788886426798899970989999998766
Q gi|254780684|r 231 RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 231 r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~rei 269 (438)
|++. ..|+..++++|-+-||-.++-+.
T Consensus 85 -----------a~~~-~~~~~tilfiDEIHRfnK~QQD~ 111 (417)
T PRK13342 85 -----------AKQS-RLGRRTILFIDEIHRFNKAQQDA 111 (417)
T ss_pred -----------HHHH-HCCCCEEEEEECHHHCCHHHHHH
T ss_conf -----------8863-14896599997820058899999
No 83
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.97 E-value=0.0019 Score=44.08 Aligned_cols=131 Identities=22% Similarity=0.242 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEE-EECCCCCCHHHHHHHHHHHCC-----------------CC-C
Q ss_conf 54333000133110011124587520022358-5037-526678899999999874078-----------------98-3
Q gi|254780684|r 130 SKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHG-QRIG-VFAGSGIGKSTLLSMFARSDC-----------------FD-K 189 (438)
Q Consensus 130 ~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~G-QR~g-Ifg~~GvGKt~Ll~~i~~~~~-----------------~d-v 189 (438)
..+...++|+.-=..|-||++.+|-|+==|-= |-+= +||-+|+|||.|++++|=+-+ .. .
T Consensus 63 ~~a~~vl~rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~ 142 (333)
T TIGR02236 63 ETADDVLERRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPK 142 (333)
T ss_pred HHHHHHHHHHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCE
T ss_conf 14899999872075044486367656079600005888771007865787667655322871121011000147767876
Q ss_pred EEEEECC-------CCCHHHHH-HHHH-H-----HC--CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCE-
Q ss_conf 8993124-------65223889-9998-6-----42--77553289841577880344444456777888864267988-
Q gi|254780684|r 190 VIISLVG-------ERGREVRE-FIED-Y-----LG--DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNV- 252 (438)
Q Consensus 190 ~V~alIG-------eR~rev~e-fi~~-~-----~~--~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~V- 252 (438)
+|| |- ||-.++++ +-.. + +. +-|++. .++-+-.| -.|++-+--+-.+++-..+.|++|
T Consensus 143 av~--IDTEnTFRPERI~qmA~GL~~g~l~~~melD~~evL~nI--~vARAyNS-~HQmllve~~~~li~e~~~~~~pv~ 217 (333)
T TIGR02236 143 AVY--IDTENTFRPERIEQMAKGLARGTLQAAMELDPDEVLKNI--YVARAYNS-NHQMLLVEKAKELIKELKNEDKPVR 217 (333)
T ss_pred EEE--EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCE--EEEEEECC-HHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 899--855979862579999986311136665327877772030--47785263-1479999999999973015799468
Q ss_pred EEEEECHHHHHHH
Q ss_conf 9997098999999
Q gi|254780684|r 253 LLILDSITRFAHS 265 (438)
Q Consensus 253 ll~~Ds~tr~a~A 265 (438)
||++||||.|=+|
T Consensus 218 L~~VDSLtsHFRa 230 (333)
T TIGR02236 218 LLIVDSLTSHFRA 230 (333)
T ss_pred EEEECCCCCCCCC
T ss_conf 9998121002236
No 84
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.005 Score=41.05 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 35850375266788999999998740789838993124652238899998642775532898415778803444444567
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
++=--|-++|++|+|||||+..|++..+..+.-+-++--.-.|+++.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i--------------------------------- 92 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI--------------------------------- 92 (436)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH---------------------------------
T ss_conf 99860577789998888999999876177669951523467999999---------------------------------
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 7788886426798899970989999998766
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A~rei 269 (438)
+.-|+-++..|+.++|++|-+-||-.++-+.
T Consensus 93 ~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~ 123 (436)
T COG2256 93 IEEARKNRLLGRRTILFLDEIHRFNKAQQDA 123 (436)
T ss_pred HHHHHHHHHCCCCEEEEEEHHHHCCHHHHHH
T ss_conf 9999998725883499872253337445655
No 85
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0064 Score=40.29 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=30.5
Q ss_pred HHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 45875-2002235850375266788999999998740
Q gi|254780684|r 149 IRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 149 Ir~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
++|+| .-+.+-+|+..+|.|.+|+|||||+.+|+.-
T Consensus 39 ~~AL~~Is~~i~~Ge~vaIIG~nGsGKSTL~~~l~Gl 75 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 7986164558859989999949998499999999758
No 86
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.75 E-value=0.011 Score=38.47 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=50.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH----CCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0375266788999999998740----7898389931246522388999986427-7553289841577880344444456
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARS----DCFDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLT 237 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~----~~~dv~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~ 237 (438)
-++|.|..|+|||||+..+.+. ..-+.++++-+++.. ...+........ +.... ...+.. . ...
T Consensus 21 vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~----~~~~~~-~-----~~l 89 (285)
T pfam00931 21 VVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTY-TEFRLQKDILQELGLDDS----DWVEKN-E-----SEL 89 (285)
T ss_pred EEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCC-CHHHHHHHHHHHHCCCCC----CCCCCC-H-----HHH
T ss_conf 99988999563999999997165565059838999979766-689999999998566654----555578-9-----999
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 777888864267988999709899
Q gi|254780684|r 238 AVTIAEYFSSKGDNVLLILDSITR 261 (438)
Q Consensus 238 a~~iAEyfr~~G~~Vll~~Ds~tr 261 (438)
+..+.+++ ++++.|+++||+-.
T Consensus 90 ~~~l~~~L--~~kr~LiVLDDVw~ 111 (285)
T pfam00931 90 AVKIKEAL--LRKRFLLVLDDVWE 111 (285)
T ss_pred HHHHHHHH--CCCCEEEEECCCCC
T ss_conf 99999997--27966999638887
No 87
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=96.72 E-value=0.0065 Score=40.22 Aligned_cols=134 Identities=7% Similarity=-0.123 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCC--
Q ss_conf 034444445677788886426798899970989999998766540477843236632455420044444311367885--
Q gi|254780684|r 228 PILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKG-- 305 (438)
Q Consensus 228 ~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~G-- 305 (438)
..++..|-++...+++++++.++|+-+-.+.|.+++-+++|..--+..-+....++-..-+.|++.+++-+ ++.|
T Consensus 295 SnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fY---ERaG~v 371 (588)
T COG1155 295 SNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFY---ERAGRV 371 (588)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH---HHCCEE
T ss_conf 66618886643532231999887630256775013899999999873350028864444167899999999---854723
Q ss_pred ------CEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHC
Q ss_conf ------23554333421676420278999861260898704277589713114456400022120
Q gi|254780684|r 306 ------NITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKA 364 (438)
Q Consensus 306 ------SiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~ 364 (438)
++|..-||--...+...++.+.+-..|=.-+-+.-.|..+.+++-..|..+.+-.-+.-
T Consensus 372 ~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y 436 (588)
T COG1155 372 RLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLY 436 (588)
T ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCCCCHHEEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 42278862589998257789999847652110035566420014445323237656737779998
No 88
>PRK09354 recA recombinase A; Provisional
Probab=96.68 E-value=0.012 Score=38.41 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCCHHHHH-HHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 1001112458752002---235850375266788999999-998740-78983899312465223889999864277553
Q gi|254780684|r 142 EKGFKTGIRVIDIFTP---LCHGQRIGVFAGSGIGKSTLL-SMFARS-DCFDKVIISLVGERGREVREFIEDYLGDNLKK 216 (438)
Q Consensus 142 ~e~L~TGIr~ID~l~p---ig~GQR~gIfg~~GvGKt~Ll-~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~l~~ 216 (438)
-+.+.||.-.+|.-+- +-+|.=+-|||+..+|||+|+ +.|+.. .....|+| |---+.--.+|.+.+ |++-
T Consensus 38 v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~--iDaE~ald~~~a~~l---GVd~ 112 (350)
T PRK09354 38 VETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAF--IDAEHALDPVYAKKL---GVDI 112 (350)
T ss_pred CCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE--EEECCCCCHHHHHHC---CCCH
T ss_conf 66544771789998758996787089998898777999999999999975994799--960002798899984---9771
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 2898415778803444444567778888642679889997098999
Q gi|254780684|r 217 SVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRF 262 (438)
Q Consensus 217 tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~ 262 (438)
.-++++..| ...-|+.++|.+...|.-.++++||+...
T Consensus 113 d~llv~qpd--------~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL 150 (350)
T PRK09354 113 DNLLVSQPD--------TGEQALEIADALVRSGAVDLIVVDSVAAL 150 (350)
T ss_pred HHEEEECCC--------HHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 571785686--------79999999999985488418998253345
No 89
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.62 E-value=0.0038 Score=41.89 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHCC--------CCCEEEEEC-C-CCC
Q ss_conf 3330001331100111245875200223--585037526678899999999874078--------983899312-4-652
Q gi|254780684|r 132 VPPAMNRQRVEKGFKTGIRVIDIFTPLC--HGQRIGVFAGSGIGKSTLLSMFARSDC--------FDKVIISLV-G-ERG 199 (438)
Q Consensus 132 ~p~p~~R~~i~e~L~TGIr~ID~l~pig--~GQR~gIfg~~GvGKt~Ll~~i~~~~~--------~dv~V~alI-G-eR~ 199 (438)
+-..++++.-...|.||.+.+|.++-=| .|.=.-|||.+|+|||.|..+++-+++ ...+||.-- | =|.
T Consensus 72 a~el~~~r~~~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~p 151 (318)
T PRK04301 72 ALEVLERRKSIGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRP 151 (318)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCH
T ss_conf 99999986347824788878880547983367078886688787035667767653376777898863799956898697
Q ss_pred HHHHHHHHHHH-C-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHH
Q ss_conf 23889999864-2-7755328984157788034444445677788886426798-89997098999999
Q gi|254780684|r 200 REVREFIEDYL-G-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDN-VLLILDSITRFAHS 265 (438)
Q Consensus 200 rev~efi~~~~-~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~-Vll~~Ds~tr~a~A 265 (438)
+-+.++-+.+- . +..-..+.++-..+ + ..+.... -...+++ .++++ -|+++||+|-+-++
T Consensus 152 eRi~qia~~~g~d~~~~L~nI~v~r~~~-~-~~q~~~~---~~~~~~~-~~~~~v~LvVvDSi~alfR~ 214 (318)
T PRK04301 152 ERIEQMAEGLGLDPDEVLDNIHVARAYN-S-DHQMLLA---EKAEELI-KEGNNIKLVIVDSLTAHFRA 214 (318)
T ss_pred HHHHHHHHHHCCCHHHHHHCEEEEECCC-H-HHHHHHH---HHHHHHH-HHCCCCEEEEEECCHHHEEE
T ss_conf 9999999984999789864026861399-8-9999999---9999999-62788049999434232121
No 90
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.58 E-value=0.027 Score=35.73 Aligned_cols=152 Identities=16% Similarity=0.264 Sum_probs=74.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 3752667889999999987407898389931246522388999986427-755328984157788034444445677788
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
..|-|+.|+|||+++..+.+.-+.+.++++.+=-..=+..+|+..+..+ |+.. ...+.....+ .+-
T Consensus 46 ~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~-----~~~~~~~~~~--------~l~ 112 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLET-----EGRDKAALLR--------ELE 112 (269)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC-----CCCCHHHHHH--------HHH
T ss_conf 999729989889999999984593454899976999999999999999859898-----8989999999--------999
Q ss_pred HHHH---HCCCCEEEEEECHHHHH-HHHHHHHHHCC-CCCCCCCCCHHHHHHCCHHHHHHHCC--CCCCCCEEEEEEEEE
Q ss_conf 8864---26798899970989999-99876654047-78432366324554200444443113--678852355433342
Q gi|254780684|r 243 EYFS---SKGDNVLLILDSITRFA-HSIREIATNSG-ELPVARGYPTSVFSELPRLLERIGPS--EKEKGNITAVISVLV 315 (438)
Q Consensus 243 Eyfr---~~G~~Vll~~Ds~tr~a-~A~reis~~~g-e~P~~~gyp~~~~~~~~~l~ERag~~--~~~~GSiT~~~~v~~ 315 (438)
+|+. .+|+++++++|.--... .++.++-++.. |..+.+ ..--+..-.|.|-++-... ..-.--|+.-+....
T Consensus 113 ~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~-ll~iiL~GqpeL~~~L~~~~~~~l~qRI~~~~~L~p 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAK-LLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCC-CEEEEEECCHHHHHHHCCCCHHHHHHCEEEEEEECC
T ss_conf 9999999669946999724221999999999999701358887-048999578679998727402545550767998479
Q ss_pred C-CCCCCCHHHHHHH
Q ss_conf 1-6764202789998
Q gi|254780684|r 316 D-GDNHNDPIADSVR 329 (438)
Q Consensus 316 ~-~dd~~~pi~~~~~ 329 (438)
- -++..+||-.-+.
T Consensus 192 l~~eet~~YI~~RL~ 206 (269)
T TIGR03015 192 LDREETREYIEHRLE 206 (269)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 998999999999998
No 91
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.54 E-value=0.0084 Score=39.40 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=43.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 37526678899999999874078983899312465223889999864277553289841577880344444456777888
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAE 243 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAE 243 (438)
+.++|++|+|||||+..|++..+....+..+ |... -+.-+++
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~--------------------------------~~i~------~~~di~~ 94 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGVNIRITSG--------------------------------PALE------KPGDLAA 94 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECC--------------------------------HHHH------HHHHHHH
T ss_conf 7887899998889999999840875376142--------------------------------6664------3899999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 864267988999709899999987665
Q gi|254780684|r 244 YFSSKGDNVLLILDSITRFAHSIREIA 270 (438)
Q Consensus 244 yfr~~G~~Vll~~Ds~tr~a~A~reis 270 (438)
.+..-+++.+|++|-+-||-.++-++=
T Consensus 95 ~l~~~~~~~ILFIDEIHr~nK~qqd~L 121 (234)
T pfam05496 95 ILTNLEPGDVLFIDEIHRLNRAVEEIL 121 (234)
T ss_pred HHHHCCCCCEEEEECHHHCCHHHHHHC
T ss_conf 998458998899966543587688744
No 92
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.52 E-value=0.009 Score=39.20 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=30.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+++-+|++++|.|++|+|||||+..+.+.-+-+
T Consensus 359 ~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~ydp~ 394 (575)
T PRK11160 359 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 394 (575)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 715897699889998899975999999986236789
No 93
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=96.47 E-value=0.02 Score=36.70 Aligned_cols=147 Identities=27% Similarity=0.389 Sum_probs=98.2
Q ss_pred ECCCE-EEEEECCCCCCC---CCCCEEEECCC-CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC--CC-----C
Q ss_conf 41997-999980485574---67888997288-5552466688654307763047887775553012112--54-----3
Q gi|254780684|r 65 INLDI-VYICPVGIGEEI---SLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIM--SK-----V 132 (438)
Q Consensus 65 ~~~~~-~~l~~~~~~~gI---~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~--~~-----~ 132 (438)
|+++. +-+|.=.+.. + +.|..+.++|. .+..-...+++-|=|.+|.-.|...|+-.++ .|+. +. .
T Consensus 18 LdD~~vvEIMLNpDG~-Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegE--LPldflGsRFeGl~ 94 (315)
T TIGR02782 18 LDDPKVVEIMLNPDGK-LWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGE--LPLDFLGSRFEGLL 94 (315)
T ss_pred HCCCCEEEEEECCCCH-HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEEC--CCCCHHHCCCCCCC
T ss_conf 3798838998669870-10500679730016611789999999999876446043578626610--75111201100468
Q ss_pred CC------CCCCCC------CCCCHHHHH---HHHHHHHHHCCC-CEEEEECCCCCCHHHHH----HHHHH-HCCCCCEE
Q ss_conf 33------000133------110011124---587520022358-50375266788999999----99874-07898389
Q gi|254780684|r 133 PP------AMNRQR------VEKGFKTGI---RVIDIFTPLCHG-QRIGVFAGSGIGKSTLL----SMFAR-SDCFDKVI 191 (438)
Q Consensus 133 p~------p~~R~~------i~e~L~TGI---r~ID~l~pig~G-QR~gIfg~~GvGKt~Ll----~~i~~-~~~~dv~V 191 (438)
|| +.=|++ .++-.+-|| ...|.|.-...- +-+.|.||-|+|||||. +.|+. +...|.+|
T Consensus 95 PPVV~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNAlla~I~~l~~P~dR~v 174 (315)
T TIGR02782 95 PPVVEAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANALLAEIAKLNDPDDRVV 174 (315)
T ss_pred CCCCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 77556551011102241047077764044557899999999971298899814588579999999998852169996189
Q ss_pred EEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCC
Q ss_conf 93124652238899998642-7755328984157788
Q gi|254780684|r 192 ISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDES 227 (438)
Q Consensus 192 ~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~ 227 (438)
+ +|+-.+ .+-++..|..-|+|+-
T Consensus 175 I-------------iEDT~ElQC~A~N~V~lrT~d~~ 198 (315)
T TIGR02782 175 I-------------IEDTAELQCAAENLVALRTSDDV 198 (315)
T ss_pred E-------------EECCHHHHHCCCCEEEEECCCCC
T ss_conf 9-------------85471320137870687448986
No 94
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.44 E-value=0.031 Score=35.28 Aligned_cols=104 Identities=23% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEE
Q ss_conf 1001112458752002--23585037526678899999999874078983899312465223889999864277-55328
Q gi|254780684|r 142 EKGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDN-LKKSV 218 (438)
Q Consensus 142 ~e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tv 218 (438)
.+.+.||+.=+|-.+= +..|+=++|=|++|+|||||+-|++.+-.....|+..-||-.-+ .+-.....-+ ....+
T Consensus 69 ~~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~~~vLYvSGEES~~--Qik~RA~RLg~~~~~l 146 (454)
T PRK11823 69 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAGGKVLYVSGEESLQ--QIKLRAERLGLPSDNL 146 (454)
T ss_pred CCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHH--HHHHHHHHHCCCCCCC
T ss_conf 55323785566522158720664899507998889999999999985599579981501578--9999999758888873
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 984157788034444445677788886426798899970989
Q gi|254780684|r 219 VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 219 vv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
.+++..|-.. |.+...+. +--++++||+-
T Consensus 147 ~l~~et~l~~------------Il~~i~~~-~P~~lIIDSIQ 175 (454)
T PRK11823 147 YLLAETNLED------------ILATIEEE-KPDLVVIDSIQ 175 (454)
T ss_pred EEEECCCHHH------------HHHHHHHH-CCCEEEEECHH
T ss_conf 7885368999------------99999860-99889994311
No 95
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=96.42 E-value=0.0067 Score=40.12 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHC--------CCCCEEEEECC--CC
Q ss_conf 43330001331100111245875200223--58503752667889999999987407--------89838993124--65
Q gi|254780684|r 131 KVPPAMNRQRVEKGFKTGIRVIDIFTPLC--HGQRIGVFAGSGIGKSTLLSMFARSD--------CFDKVIISLVG--ER 198 (438)
Q Consensus 131 ~~p~p~~R~~i~e~L~TGIr~ID~l~pig--~GQR~gIfg~~GvGKt~Ll~~i~~~~--------~~dv~V~alIG--eR 198 (438)
.+...++++.--..|.||.+.||.++-=| .|.=.-|+|.+|+|||.|..+++-++ ....+||.--- =+
T Consensus 11 t~~~~~~~r~~~~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~ 90 (261)
T pfam08423 11 TATELHQRRSEVIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFR 90 (261)
T ss_pred CHHHHHHHHCCCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCC
T ss_conf 39999997548735778987899873798667729999899888789999999999407096569997289993688869
Q ss_pred CHHHHHHHHHHH-C-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 223889999864-2-775532898415778803444444567778888642679889997098999999
Q gi|254780684|r 199 GREVREFIEDYL-G-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHS 265 (438)
Q Consensus 199 ~rev~efi~~~~-~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A 265 (438)
.+-+.++.+.+- . +..-..+.+.-..+ . ....... ..+.+.+. +.+--|+++||+|.+-++
T Consensus 91 ~eRl~qia~~~~~~~~~~L~~I~v~r~~~-~-~~~~~~l---~~~~~~~~-~~~v~LvVvDSiaalfR~ 153 (261)
T pfam08423 91 PERIVAIAERFGLDPEEVLDNIAYARAYN-T-EHQMQLL---LQAAAMMS-ESRFALLIVDSATALYRT 153 (261)
T ss_pred HHHHHHHHHHHCCCHHHHHHHCEECCCCC-H-HHHHHHH---HHHHHHHH-CCCCEEEEEECCCEEEEE
T ss_conf 89999999982999789875331416899-8-9999999---99999873-178349998324002333
No 96
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.029 Score=35.52 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=65.3
Q ss_pred CCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 3311001112458752002--2358503752667889999999987407--89838993124652238899998642775
Q gi|254780684|r 139 QRVEKGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARSD--CFDKVIISLVGERGREVREFIEDYLGDNL 214 (438)
Q Consensus 139 ~~i~e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR~rev~efi~~~~~~~l 214 (438)
..-.+.+.||.+.+|.++- +-+|.-.-|||+.|+|||+++.+++-++ ....++|.= =|.+-....+..-. ...
T Consensus 36 ~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID-tE~~l~p~r~~~l~--~~~ 112 (279)
T COG0468 36 REDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID-TEHALDPERAKQLG--VDL 112 (279)
T ss_pred HHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE-CCCCCCHHHHHHHH--HHH
T ss_conf 643660165505578774688655358998468876546689999888653798089995-89998999999988--754
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHH
Q ss_conf 532898415778803444444567778888642679--8899970989999998
Q gi|254780684|r 215 KKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGD--NVLLILDSITRFAHSI 266 (438)
Q Consensus 215 ~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~--~Vll~~Ds~tr~a~A~ 266 (438)
..-++++..+..-- ++.+++.+-..+. ==|+++||++-+-++.
T Consensus 113 -~d~l~v~~~~~~e~--------q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 113 -LDNLLVSQPDTGEQ--------QLEIAEKLARSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred -HCCEEEECCCCHHH--------HHHHHHHHHHHCCCCCCEEEEECCCCCCHHH
T ss_conf -21536866897799--------9999999987546887889982574346365
No 97
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.28 E-value=0.033 Score=35.03 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 0223585037526678899999999874078
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.......-+.+.|++|+|||+++..|++...
T Consensus 14 ~~~~~~~~ill~GppGtGKT~la~~ia~~~~ 44 (151)
T cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8187998089989999886599999999712
No 98
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.27 E-value=0.028 Score=35.56 Aligned_cols=40 Identities=30% Similarity=0.391 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1112458752002-235850375266788999999998740
Q gi|254780684|r 145 FKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 145 L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+.||+..+|-++- +.+|+=.-|.|.+|+|||+++..++.+
T Consensus 2 IpTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~ 42 (186)
T pfam03796 2 LPTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARN 42 (186)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 38880778864269888817999967999879999999999
No 99
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.0055 Score=40.74 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=29.5
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHH---HCCCCCEE
Q ss_conf 200223585037526678899999999874---07898389
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFAR---SDCFDKVI 191 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~---~~~~dv~V 191 (438)
.=+.|.+|...||+|.||+|||||+..|+- ...+.+.+
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~ 66 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66 (252)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 25996489789998489898889999995656788862898
No 100
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0073 Score=39.86 Aligned_cols=32 Identities=41% Similarity=0.644 Sum_probs=27.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+.+|+|++|.|+.|+|||||+.+|+..
T Consensus 330 ~vsl~i~~GeriaIvG~NGsGKSTLlk~L~G~ 361 (638)
T PRK10636 330 SIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred CCCCEECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 77505637847999747871388999997288
No 101
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=96.03 E-value=0.0089 Score=39.22 Aligned_cols=31 Identities=39% Similarity=0.458 Sum_probs=27.7
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 0223585037526678899999999874078
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
+.+-.|.|+.|.|.||+|||||+..|.+--+
T Consensus 382 L~l~~G~r~Ai~G~SG~GKsTLL~~L~G~l~ 412 (566)
T TIGR02868 382 LDLPPGERVAILGPSGSGKSTLLATLAGLLD 412 (566)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 4113886089866887657899999984028
No 102
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.0051 Score=41.00 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=29.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.-+.+.+|+-+.|.|+||||||||+..|+--..
T Consensus 21 ~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 21 DINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5035877997999989997889999999968787
No 103
>KOG0743 consensus
Probab=95.98 E-value=0.025 Score=35.99 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=81.1
Q ss_pred CCCEEECCHHHHHHHHHHHHHHC-----------CCCCCCC--CCCEEEEECCCCCCCC--------CCCCCCCCHHHHH
Q ss_conf 88555246668865430776304-----------7887775--5530121125433300--------0133110011124
Q gi|254780684|r 91 GRFRISPSACWCGRVINALGKPI-----------DGDDSLG--KGDLSMEIMSKVPPAM--------NRQRVEKGFKTGI 149 (438)
Q Consensus 91 g~~~i~vG~~lLGRViD~lG~Pl-----------Dg~~~l~--~~~~~~~i~~~~p~p~--------~R~~i~e~L~TGI 149 (438)
+++.--|=...|++|.--.=+.+ .++..+. .+..|.++.-+-|..+ ..+.|-+=|+-=+
T Consensus 142 k~~~e~V~~syl~~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~ 221 (457)
T KOG0743 142 KKPRELVTLSYLPYVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFI 221 (457)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 86277767867888999999999988987776158875112435776125689999874420148667899999999997
Q ss_pred HHHHHHHHHCCCCEE--EEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 587520022358503--752667889999999987407898389931246522388999986427755328984157788
Q gi|254780684|r 150 RVIDIFTPLCHGQRI--GVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDES 227 (438)
Q Consensus 150 r~ID~l~pig~GQR~--gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~ 227 (438)
+.=|-.-.+|+-=|= +++|++|+|||++.+.||++-+-|||..-|-..+. -.| +..++...-.+||+|.-.-|.+
T Consensus 222 k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--n~d-Lr~LL~~t~~kSIivIEDIDcs 298 (457)
T KOG0743 222 KGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--DSD-LRHLLLATPNKSILLIEDIDCS 298 (457)
T ss_pred HCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC--CHH-HHHHHHHCCCCCEEEEEECCCC
T ss_conf 2235788648450004120479999888999999720587367744002368--389-9999972899718999612432
Q ss_pred HHHHH
Q ss_conf 03444
Q gi|254780684|r 228 PILRK 232 (438)
Q Consensus 228 ~~~r~ 232 (438)
.-+|-
T Consensus 299 ~~l~~ 303 (457)
T KOG0743 299 FDLRE 303 (457)
T ss_pred CCCCC
T ss_conf 30443
No 104
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.92 E-value=0.014 Score=37.84 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=29.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|+-.+|.|+||+|||||+.+|+--...+
T Consensus 16 ~vsl~i~~Ge~~~i~GpSGsGKSTLL~~i~gl~~p~ 51 (206)
T TIGR03608 16 DLNLTIEKGKMVAIVGESGSGKSTLLNIIGLLEKPD 51 (206)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 807798699899998799970999999997599989
No 105
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.91 E-value=0.0086 Score=39.35 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=85.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 3752667889999999987407898389931-246522388999986427755328984157788034444445677788
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISL-VGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~al-IGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
+++||++|+|||||++.||+--+...-|-.+ .=||..+..-.+..+
T Consensus 33 ~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPgDlaaiLt~L--------------------------------- 79 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL--------------------------------- 79 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC---------------------------------
T ss_conf 66317568746789999999838932674067554757899999705---------------------------------
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHH----------HHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 886426798899970989999998766----------5404778432366324554200444443113678852355433
Q gi|254780684|r 243 EYFSSKGDNVLLILDSITRFAHSIREI----------ATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVIS 312 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~tr~a~A~rei----------s~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~ 312 (438)
+-+||| ++|=+-|.+.+--|+ -...|+=|+.+.-.= ++|. =|-+.
T Consensus 80 -----~~gDVL-FIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~l----dLpP--------------FTLvG- 134 (305)
T TIGR00635 80 -----EEGDVL-FIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRL----DLPP--------------FTLVG- 134 (305)
T ss_pred -----CCCCEE-ECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEE----CCCC--------------CCCCC-
T ss_conf -----689631-0125650483345310530012178778712898525760----6869--------------44200-
Q ss_pred EEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf 34216764202789998612608987042775897131144564000221-208999999999999----9999999999
Q gi|254780684|r 313 VLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD-KAWSADEKKLVSSLT----HLIHRFEETR 387 (438)
Q Consensus 313 v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~-~~~~~~~~~~~~~~~----~~l~~y~~~~ 387 (438)
.+|-.+-+|.|--|=+.=+..=.+|=..+|++= .+=.+++|+ ++-.++-.++|.+-| =-.-..+.++
T Consensus 135 ATTR~G~lt~PLrdRFG~~~rl~fY~~~EL~~I--------v~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVR 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTPEELAEI--------VSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVR 206 (305)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 003477410313345447454026898789999--------875334414300778999998754786378887767664
Q ss_pred HHHHHHC
Q ss_conf 9998523
Q gi|254780684|r 388 DIRLIGG 394 (438)
Q Consensus 388 ~l~~~g~ 394 (438)
|++++-+
T Consensus 207 DfA~V~~ 213 (305)
T TIGR00635 207 DFAQVRG 213 (305)
T ss_pred HHHHHHC
T ss_conf 4888726
No 106
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.86 E-value=0.17 Score=29.95 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 585037526678899999999874078983899
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVII 192 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~ 192 (438)
+| ++++|++|+|||.|+..+|..+++..+-+
T Consensus 167 kG--vLLyGPPGtGKTllAkAvA~e~~~~fi~v 197 (390)
T PRK03992 167 KG--VLLYGPPGTGKTLLAKAVAHETNATFIRV 197 (390)
T ss_pred CE--EEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 72--78689899978999999998748887996
No 107
>KOG4658 consensus
Probab=95.86 E-value=0.03 Score=35.36 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC-----CCCEEEEECCCCCHHHHHHHHHHHCC-CC-CCE
Q ss_conf 111245875200223585037526678899999999874078-----98389931246522388999986427-75-532
Q gi|254780684|r 145 FKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC-----FDKVIISLVGERGREVREFIEDYLGD-NL-KKS 217 (438)
Q Consensus 145 L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~-----~dv~V~alIGeR~rev~efi~~~~~~-~l-~~t 217 (438)
+++=++.+-..+---..|-++|+|-.|+|||||+.+|.++.. -|+++.+.++.- =.+....++.... +. ..
T Consensus 163 ~e~~~ekl~~~L~~d~~~ivgi~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~-f~~~~iq~~Il~~l~~~~~- 240 (889)
T KOG4658 163 LETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE-FTTRKIQQTILERLGLLDE- 240 (889)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHCCCCCEEEEEEECCC-CCHHHHHHHHHHHHCCCCC-
T ss_conf 88999999998404799689998897034999999984133122357874999997763-1088899999998446871-
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 8984157788034444445677788886426798899970989
Q gi|254780684|r 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 218 vvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
.-++... .-.+.-+=.++ ++++-|+++||+=
T Consensus 241 -----~~~~~~~-----~~~~~~i~~~L--~~krfllvLDDIW 271 (889)
T KOG4658 241 -----EWEDKEE-----DELASKLLNLL--EGKRFLLVLDDIW 271 (889)
T ss_pred -----CCCCCCH-----HHHHHHHHHHH--CCCCEEEEEECCC
T ss_conf -----0001028-----89999999985--5685599982567
No 108
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.81 E-value=0.0072 Score=39.91 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=27.9
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 0022358503752667889999999987407
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
=+++-+|.++.|+|+||.|||||+.-||-.-
T Consensus 18 ~L~V~~Ge~VAi~GpSGAGKSTLLnLiAGF~ 48 (213)
T TIGR01277 18 DLSVEDGERVAILGPSGAGKSTLLNLIAGFL 48 (213)
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 0413017768887589862788987786404
No 109
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.78 E-value=0.0065 Score=40.22 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=29.8
Q ss_pred HHH-HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 587-520022358503752667889999999987407
Q gi|254780684|r 150 RVI-DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 150 r~I-D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.++ |.-+.+.+|+-+.|+|+||+|||||+.+|+--.
T Consensus 18 ~al~~v~l~v~~Ge~~~llGpSG~GKtTlLr~iaGl~ 54 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8886648699899999999999535999999997699
No 110
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0064 Score=40.29 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|+.++|+|+||+|||||+.+|+.--+.+
T Consensus 19 ~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~p~ 54 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT 54 (242)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 027688699899999999956999999997599998
No 111
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.75 E-value=0.0067 Score=40.11 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+.++|+|++|+|||||+.+|+..-.
T Consensus 23 dIsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6078986998999999999869999999972898
No 112
>PTZ00035 Rad51; Provisional
Probab=95.74 E-value=0.059 Score=33.22 Aligned_cols=176 Identities=17% Similarity=0.135 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCH
Q ss_conf 466688654307763047887775553012112543330001331100111245875200223--585037526678899
Q gi|254780684|r 97 PSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC--HGQRIGVFAGSGIGK 174 (438)
Q Consensus 97 vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig--~GQR~gIfg~~GvGK 174 (438)
.++.-.-.++.+-.+-.+. | +..+...++|+.---.+-||-+.+|.|+-=| -|.-.=|||.+|+||
T Consensus 76 ise~k~~Ki~~~a~k~~~~-g-----------F~ta~~~~~~R~~~~~itTGs~~LD~LLGGGiet~sITEi~Ge~gsGK 143 (350)
T PTZ00035 76 ISEQKAEKLKKACKELCNS-G-----------FCNAIDYHDARQNLIKFTTGSKQLDRLLKGGIETGGITELFGEFRTGK 143 (350)
T ss_pred CCHHHHHHHHHHHHHHCCC-C-----------CCCHHHHHHHHHHCEEECCCCHHHHHHHCCCEECCCEEEEEECCCCCH
T ss_conf 4699999999999975577-7-----------711999999986460357585788876278941385878972798978
Q ss_pred HHHHHHHHHHCC--------CCCEEEEEC-C----CCCHHHHHHHHHHH-C-CCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 999999874078--------983899312-4----65223889999864-2-7755328984157788034444445677
Q gi|254780684|r 175 STLLSMFARSDC--------FDKVIISLV-G----ERGREVREFIEDYL-G-DNLKKSVVVVATSDESPILRKMAPLTAV 239 (438)
Q Consensus 175 t~Ll~~i~~~~~--------~dv~V~alI-G----eR~rev~efi~~~~-~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~ 239 (438)
|.|..+++=.++ ...+||.-- | ||-..+++ .+- . +..-..+.++-.-+....+..+ .
T Consensus 144 TQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFrpeRi~qIA~---~~gld~~~vL~nI~~ara~n~ehq~~ll-----~ 215 (350)
T PTZ00035 144 SQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRPERIVAIAK---RYGLHPTDCLNNIAYAKAYNCDHQTELL-----I 215 (350)
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHH---HCCCCHHHHHHHEEEEEECCHHHHHHHH-----H
T ss_conf 9999999999048577779886279996889987899999998---7099979985332232206878899999-----9
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHH
Q ss_conf 788886426798899970989999998766540477843236632455420044444
Q gi|254780684|r 240 TIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLER 296 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ER 296 (438)
..++ +..+.+=-||++||+|.+-++-- .-.|+...|.-.-....+.|-+|-++
T Consensus 216 ~~~~-~~~e~~vrLlIVDSitalFR~ef---~GRgeLa~RQq~L~~~l~~L~~lA~~ 268 (350)
T PTZ00035 216 DASA-MMADARFALLIVDSATALYRSEY---IGRGELATRQSHLCRFLRGLQRIADI 268 (350)
T ss_pred HHHH-HHHCCCEEEEEEHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999-85116758998544566766540---57014899999999999999999998
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.73 E-value=0.012 Score=38.20 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=30.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|+.++|.|.+|+|||||+.+|+.-...+
T Consensus 28 ~isl~i~~GE~v~ivG~sGsGKSTLl~~i~Gl~~p~ 63 (228)
T PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS 63 (228)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 738899999899999999858999999996699999
No 114
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.015 Score=37.64 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|..++|+|+||+|||||+.+|+.-...+
T Consensus 18 ~vsl~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p~ 53 (232)
T cd03300 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT 53 (232)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 617488799899999999983999999997799998
No 115
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.71 E-value=0.0083 Score=39.44 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|.|++|.|..|+|||||+.+|+..-
T Consensus 337 ~vsl~i~~Ge~ialvG~NGsGKSTLlk~l~G~l 369 (632)
T PRK11147 337 DFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL 369 (632)
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 533335788779998898842779999860666
No 116
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=95.68 E-value=0.0092 Score=39.12 Aligned_cols=33 Identities=33% Similarity=0.350 Sum_probs=26.6
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 200223585037526678899999999874078
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.=+.|-++|=..|+|+|||||||||-.|+|=.+
T Consensus 20 i~~~I~~n~vTAlIGPSGCGKSTlLR~lNRMnD 52 (248)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMND 52 (248)
T ss_pred CCCEECCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 562003770589877889867899999887764
No 117
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.0073 Score=39.85 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=30.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|..++|+|+||+|||||+.+|+.-..-+
T Consensus 42 ~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~p~ 77 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT 77 (269)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 747588899999999899848999999997599999
No 118
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.66 E-value=0.0079 Score=39.60 Aligned_cols=25 Identities=44% Similarity=0.731 Sum_probs=8.9
Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 2235850375266788999999998
Q gi|254780684|r 157 PLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 157 pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
.|-+|+|+||.|.+|+|||||+..|
T Consensus 29 ~i~~Ge~vgLvG~NGaGKSTLlriL 53 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIM 53 (556)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 9968989999999997199999998
No 119
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.66 E-value=0.008 Score=39.59 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+++.+|.-+.|+|+||+|||||+.+|+.--+.+
T Consensus 23 dvsl~i~~GE~~~llGpSG~GKTTlLr~iaGL~~p~ 58 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 767199999899999999745999999997776777
No 120
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.65 E-value=0.0079 Score=39.61 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 245875200223585037526678899999999874078
Q gi|254780684|r 148 GIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 148 GIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
-|-+=|.-+.+-+|.-.+|+|.||+|||||+.+|++-..
T Consensus 41 ~vAv~dVsl~I~~GEi~~ivG~SGsGKSTLlr~i~gL~~ 79 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998974076887999999999998469999999975999
No 121
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.0076 Score=39.75 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=29.9
Q ss_pred HHH-HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 587-520022358503752667889999999987407
Q gi|254780684|r 150 RVI-DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 150 r~I-D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
+++ |.=+.+-+|+..+|+|++|+|||||+.+|+.--
T Consensus 18 ~al~~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~ 54 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9996718898799899999999957999999997599
No 122
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.005 Score=41.07 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+++-+|+...|+|++|+|||||+.+|+....-+
T Consensus 16 ~i~l~i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~ 51 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ 51 (211)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 278898899899999999955999999997699988
No 123
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.62 E-value=0.0092 Score=39.12 Aligned_cols=33 Identities=45% Similarity=0.658 Sum_probs=28.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.|-+|++++|.|.+|+|||||+..|.+--
T Consensus 22 ~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~ 54 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 507998799999999999997999999996035
No 124
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.0089 Score=39.22 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=29.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|..++|+|+||+|||||+.+|+.-..-+
T Consensus 18 ~vs~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~~p~ 53 (178)
T cd03229 18 DVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD 53 (178)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 707698899899999999983999999998599999
No 125
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.61 E-value=0.047 Score=33.95 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5037526678899999999874
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
|++.|.|.+|+|||||+..++.
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~ 22 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLAL 22 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9899982798989999999999
No 126
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.58 E-value=0.022 Score=36.36 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|++++|.|.+|+|||||+.+|+..-
T Consensus 20 ~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~ 52 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 558998699999999999875999999998617
No 127
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.57 E-value=0.0097 Score=38.95 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|++++|.|.+|+|||||+..|.+.-.
T Consensus 26 ~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 2588986999999999999879999999998728
No 128
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.56 E-value=0.0088 Score=39.28 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=8.6
Q ss_pred EEEECCCCCHHHHHHHHHH
Q ss_conf 9931246522388999986
Q gi|254780684|r 191 IISLVGERGREVREFIEDY 209 (438)
Q Consensus 191 V~alIGeR~rev~efi~~~ 209 (438)
.++++|..|.==.-++.-+
T Consensus 340 riaIvG~NGsGKSTLlk~L 358 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLL 358 (638)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 7999747871388999997
No 129
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.53 E-value=0.029 Score=35.53 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHC--------------------CCC------CCCCCCCEEEEECC---CCCCCCCCCCCCCCHHH
Q ss_conf 46668865430776304--------------------788------77755530121125---43330001331100111
Q gi|254780684|r 97 PSACWCGRVINALGKPI--------------------DGD------DSLGKGDLSMEIMS---KVPPAMNRQRVEKGFKT 147 (438)
Q Consensus 97 vG~~lLGRViD~lG~Pl--------------------Dg~------~~l~~~~~~~~i~~---~~p~p~~R~~i~e~L~T 147 (438)
-|.=|.||++=|.=+-| +.. =++|..+....+++ .||+.-+ -++|+.-
T Consensus 266 AgSIl~GRaLaPid~aI~~Wk~~~~Ar~ay~Rl~~ll~~~p~~~~~m~LP~P~G~L~vE~v~~~PP~~~~---WsqPivP 342 (556)
T TIGR01842 266 AGSILVGRALAPIDGAIGGWKQFSAARQAYKRLNELLAEYPSRAEAMALPEPEGHLSVENVTIVPPGGKK---WSQPIVP 342 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC---CCCCCCC
T ss_conf 8889997784107788888888999999999999999857888754578898636888776510786313---5789776
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 24587520022358503752667889999999987
Q gi|254780684|r 148 GIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA 182 (438)
Q Consensus 148 GIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~ 182 (438)
--..=|.=+.+-.|--++|+|+||+|||||+-+|.
T Consensus 343 k~~l~gi~F~~~aGe~laIIGPSgSGKStLaR~~v 377 (556)
T TIGR01842 343 KPTLRGISFAIQAGEALAIIGPSGSGKSTLARILV 377 (556)
T ss_pred HHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 14227862156377458887478652588987887
No 130
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.51 E-value=0.0087 Score=39.30 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=28.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.-+.+.+|++++|.|.+|+|||||+..|+.-
T Consensus 19 ~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl 50 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 45889889999999958999889999998698
No 131
>PRK10744 phosphate transporter subunit; Provisional
Probab=95.51 E-value=0.011 Score=38.60 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=27.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+..+|+|++|+|||||+.+|+.-
T Consensus 28 ~vsl~i~~Ge~~~liG~nGaGKSTLlk~i~gl 59 (257)
T PRK10744 28 NINLDIAKNQVTAFIGPSGCGKSTLLRTFNKM 59 (257)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 42899889989999999998199999999876
No 132
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.01 Score=38.74 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+++-+||+++|.|.+|+|||||+..|.+.-
T Consensus 19 ~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~ 51 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 568998699999999999998999999974385
No 133
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.49 E-value=0.0099 Score=38.91 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|..+.|+|+||+|||||+.+|+.-..
T Consensus 18 ~vsl~i~~Ge~~~ivGpSGsGKSTLL~~i~gL~~ 51 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7075988998999999998449999999981999
No 134
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.48 E-value=0.01 Score=38.87 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=41.4
Q ss_pred EEECCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 2112543330--------001331100111245875200223585037526678899999999874078
Q gi|254780684|r 126 MEIMSKVPPA--------MNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 126 ~~i~~~~p~p--------~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
+.++++.|.- .+|.-|.+..-.=+-+=|.=+.+-+|.-+.|+|+||+|||||+.+|+.-..
T Consensus 7 ~kiFG~~~~~a~~~~~~g~~k~~i~~~tg~~vAV~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~GL~~ 75 (382)
T TIGR03415 7 DVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 995289989999999879998999883399998965174887998999999997349999999975999
No 135
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.48 E-value=0.011 Score=38.67 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8752002235850375266788999999998740
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
.+|.-+++-=-...+|||.||+|||||+..|+-=
T Consensus 13 ~Ld~~~~~pg~GvtAlFG~SGsGKTtli~~iaGL 46 (361)
T TIGR02142 13 ELDVDLTLPGQGVTALFGRSGSGKTTLIRLIAGL 46 (361)
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 7777653287406871258997078999998731
No 136
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.019 Score=36.85 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=31.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 5200223585037526678899999999874078983
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDK 189 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv 189 (438)
|.=+.+-+|.-.+|+|++|+|||||+.+|+.--..+.
T Consensus 17 ~vs~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~p~~ 53 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS 53 (235)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 1487988998999999996359999999974999996
No 137
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.47 E-value=0.02 Score=36.70 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=33.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 520022358503752667889999999987407898389931246
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGE 197 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGe 197 (438)
|.=+.+-+|.-+.|+|+||+|||||+.+|+.-...+---+-.=|+
T Consensus 18 ~isl~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~ 62 (213)
T cd03301 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR 62 (213)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 617798699899999999880999999997699998639999999
No 138
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.0099 Score=38.89 Aligned_cols=34 Identities=38% Similarity=0.404 Sum_probs=26.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+..+|+|++|+|||||+.+|+.-..
T Consensus 22 ~vsl~i~~Ge~~~llGpsG~GKTTllr~iaGl~~ 55 (358)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (358)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5277988998999999986369999999976999
No 139
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.012 Score=38.39 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=29.2
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 2002235850375266788999999998740789
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
.=+.+-+|+.++|+|++|+|||||+.+|+..-..
T Consensus 18 isl~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~p 51 (233)
T PRK10771 18 FTLTVERGEQVAILGPSGAGKSTLLNLIAGFLTP 51 (233)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 7889889989999999998199999999659999
No 140
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.45 E-value=0.012 Score=38.30 Aligned_cols=45 Identities=33% Similarity=0.502 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 31100111245875-20022358503752667889999999987407
Q gi|254780684|r 140 RVEKGFKTGIRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 140 ~i~e~L~TGIr~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
-++..+. +..++| .=+.|.+|--+.++|+|||||||+|-|||-..
T Consensus 10 ~v~k~yg-~~~al~~isl~i~~Gef~tlLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 10 NVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEEECC-CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 4566628-726773214454488689998998888899999996777
No 141
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.026 Score=35.79 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=31.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 5200223585037526678899999999874078983
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDK 189 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv 189 (438)
|.-+++-.|+|+.|.|.+|+|||||++.+++.=+.+.
T Consensus 356 ~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~ 392 (573)
T COG4987 356 NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392 (573)
T ss_pred CCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 5651325887688877999878999999972358788
No 142
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.01 Score=38.85 Aligned_cols=34 Identities=38% Similarity=0.412 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+.+|.-++|.|++|+|||||+.+|+.--.
T Consensus 19 dvsl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~ 52 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 3177986998999999998469999999975998
No 143
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.43 E-value=0.038 Score=34.67 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=36.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC-----CCHHHHHHHHHH
Q ss_conf 520022358503752667889999999987407898389931246-----522388999986
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGE-----RGREVREFIEDY 209 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGe-----R~rev~efi~~~ 209 (438)
|.=+.+-+|--+.|.|+||+||||||++|.--...+--.+..-|. ...+..+|..+.
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~~~~~l~~~~~~~~R~~~ 84 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKK 84 (226)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHH
T ss_conf 62588749989999899999899999999646678884699998886758988999997774
No 144
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.43 E-value=0.011 Score=38.64 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+.++|+|.+|+|||||+.+|+.--
T Consensus 27 ~is~~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~ 59 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 458998599899999999997999999996497
No 145
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.017 Score=37.12 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+.+|+-+.|+|+||+|||||+.+|+.-..
T Consensus 24 ~vsl~i~~Ge~~~llGpSG~GKTTlLr~iaGl~~ 57 (351)
T PRK11432 24 NLDLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 4574988998999999996499999999976999
No 146
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.42 E-value=0.012 Score=38.42 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.-+.+-+|++++|.|.+|+|||||+..|.+.-+
T Consensus 21 ~isl~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~ 54 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 5589976999999999999989999999823861
No 147
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.011 Score=38.59 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=28.4
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 200223585037526678899999999874078
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.=+.+-+|++++|.|.+|+|||||+..|...-.
T Consensus 21 isl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 189985998999999999839999999976775
No 148
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.39 E-value=0.011 Score=38.64 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=30.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|+..+|.|++|+|||||+.+|+.-...+
T Consensus 22 ~isl~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~ 57 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT 57 (218)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 628998699899999999986999999996699999
No 149
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.38 E-value=0.012 Score=38.26 Aligned_cols=17 Identities=12% Similarity=0.388 Sum_probs=6.7
Q ss_pred CCCHHH-HHHCCH-HHHHH
Q ss_conf 663245-542004-44443
Q gi|254780684|r 281 GYPTSV-FSELPR-LLERI 297 (438)
Q Consensus 281 gyp~~~-~~~~~~-l~ERa 297 (438)
.|+|.+ |--|-| |++|.
T Consensus 485 ~y~Gtvl~VSHDr~fl~~~ 503 (632)
T PRK11147 485 SYQGTLLLVSHDRQFVDNT 503 (632)
T ss_pred HCCCEEEEEECCHHHHHHH
T ss_conf 5898399997989999853
No 150
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.012 Score=38.27 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|.-.+|+|.||+|||||+.+|+.--.
T Consensus 18 ~isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~ 51 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6064887998999999999729999999975999
No 151
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.36 E-value=0.013 Score=38.07 Aligned_cols=32 Identities=38% Similarity=0.509 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+..+|+|+||+|||||+.+|+.-
T Consensus 18 ~isl~i~~Ge~~~iiG~SGsGKSTll~~i~gL 49 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 40678879989999999998199999999744
No 152
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.34 E-value=0.1 Score=31.42 Aligned_cols=104 Identities=25% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEE
Q ss_conf 001112458752002--235850375266788999999998740-78983899312465223889999864277-55328
Q gi|254780684|r 143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDN-LKKSV 218 (438)
Q Consensus 143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tv 218 (438)
+.+.||+.=+|-.+= ++.|.=++|=|++|.|||||+-|++.+ ++....|+..-||-.-+ .+-.....-+ ....+
T Consensus 62 ~R~~Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~--QIk~RA~RLg~~~~~l 139 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE--QIKLRADRLGISTENL 139 (372)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH--HHHHHHHHHCCCCCCC
T ss_conf 54447836665400577306717998259988688999999999986399389982456789--9998999858788772
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 9841577880344444456777888864267988999709899
Q gi|254780684|r 219 VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITR 261 (438)
Q Consensus 219 vv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr 261 (438)
.+++..|-. .|.+... .-+--++++||+-.
T Consensus 140 ~l~set~le------------~Il~~i~-~~kP~~lIIDSIQT 169 (372)
T cd01121 140 YLLAETNLE------------DILASIE-ELKPDLVIIDSIQT 169 (372)
T ss_pred EEEECCCHH------------HHHHHHH-HHCCCEEEEECHHH
T ss_conf 788435699------------9999999-71998899956220
No 153
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.012 Score=38.37 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=28.8
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|..++|.|.||+|||||+.+|+.-.
T Consensus 30 ~vs~~i~~GE~l~ivGeSGsGKSTL~r~i~gl~ 62 (266)
T PRK10419 30 NVSLTLKSGETVALLGRSGCGKSTLARLLVGLE 62 (266)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 817588899899999999977999999996699
No 154
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.33 E-value=0.011 Score=38.47 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=27.8
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+..+|.|.+|+|||||+..|+..
T Consensus 23 ~isl~i~~Ge~~~IvG~sGsGKSTLl~~i~G~ 54 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 14899769989999999998589999998189
No 155
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.32 E-value=0.012 Score=38.34 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=29.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.-+++-+|++++|.|.+|+|||||+..|...-.
T Consensus 20 ~i~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 20 NVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7699985999999999999809999999966666
No 156
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.32 E-value=0.013 Score=38.02 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=29.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+.+|+.++|+|++|+|||||+.+|+..-
T Consensus 24 ~Vs~~v~~GEi~~iiG~nGaGKSTLl~~i~G~~ 56 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 227788799799998889988999999985678
No 157
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.31 E-value=0.012 Score=38.31 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=29.8
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|++++|.|.+|+|||||+..|.+.-.
T Consensus 32 ~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5389982999999999999849999999964546
No 158
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.30 E-value=0.023 Score=36.20 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=28.9
Q ss_pred HHHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 458752-00223585037526678899999999874078
Q gi|254780684|r 149 IRVIDI-FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 149 Ir~ID~-l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
..++|. =+.+-+|+-++|.|++|+|||||+.+|+....
T Consensus 30 ~~aL~~vsl~I~~GE~~~llGpSGsGKSTLlr~iaGl~~ 68 (378)
T PRK09452 30 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET 68 (378)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999936277999998999998999769999999976999
No 159
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.29 E-value=0.013 Score=37.92 Aligned_cols=34 Identities=35% Similarity=0.296 Sum_probs=29.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+..+|.|++|+|||||+..|+..-.
T Consensus 25 ~is~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~ 58 (225)
T PRK10247 25 NINFSLRAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5179985996999999999999999999964668
No 160
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.27 E-value=0.013 Score=38.13 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=28.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.-+.+-+||+++|.|.+|+|||||+..|.+.-
T Consensus 55 ~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 648998499999999999981999999995787
No 161
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.27 E-value=0.012 Score=38.28 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=27.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 752002235850375266788999999998740
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
++-+..+-+|+.++|+|++|+|||||+.+|+..
T Consensus 16 l~~~~~v~~GEiv~ilGpNGaGKSTllk~i~G~ 48 (177)
T cd03222 16 LVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred ECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 658995589989999899999999999999688
No 162
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.25 E-value=0.011 Score=38.48 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.3
Q ss_pred HHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 875-20022358503752667889999999987407
Q gi|254780684|r 151 VID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 151 ~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|+| .-+.+-+|+.++|+|.+|+|||||+.+|+.--
T Consensus 22 aL~~isl~i~~GE~v~iiG~nGsGKSTLl~~l~GLl 57 (287)
T PRK13637 22 ALDNVNIEIEDGEFVALIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 753207698799899999999939999999997399
No 163
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.25 E-value=0.013 Score=38.06 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=28.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|++++|.|.+|+|||||+..|...-
T Consensus 19 ~inl~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~ 51 (218)
T cd03290 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 769998699999999999980999999985556
No 164
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.24 E-value=0.013 Score=37.99 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=26.5
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 200223585037526678899999999874078
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.=+.+-+|.-.+|+|++|+|||||+.+|+.-..
T Consensus 21 vsl~i~~GE~~~llGpSGsGKSTLlr~iaGL~~ 53 (352)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (352)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 376999998999999998469999999976999
No 165
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.014 Score=37.90 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=29.8
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|+-.+|+|++|+|||||+.+|+.--..+
T Consensus 19 ~isl~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p~ 54 (241)
T cd03256 19 DVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT 54 (241)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 838899999899999999833999999997499998
No 166
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.025 Score=36.01 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=29.1
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 75200223585037526678899999999874078
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
=|.=+++-+|.-.+|+|++|+|||||+.+|+....
T Consensus 36 ~~vsl~I~~GE~~~llGpsGsGKSTllr~i~Gl~~ 70 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred CCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 05187999998999999998489999999976999
No 167
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.015 Score=37.52 Aligned_cols=35 Identities=40% Similarity=0.466 Sum_probs=27.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+ .|.-++|+|+||+|||||+.+|+--...+
T Consensus 16 ~i~f~i-~ge~~~iiGpSGsGKSTll~~i~GL~~p~ 50 (214)
T cd03297 16 KIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPD 50 (214)
T ss_pred EEEEEC-CCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 999862-99799999999735999999998499999
No 168
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.014 Score=37.91 Aligned_cols=33 Identities=39% Similarity=0.474 Sum_probs=26.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+-++|+|++|+|||||+.+|+.-.
T Consensus 21 ~vsl~i~~Ge~~~llGpsG~GKSTllr~i~Gl~ 53 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 438898799899999999736999999997799
No 169
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.19 E-value=0.014 Score=37.87 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=28.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+-.+|+|++|+|||||+.+|+..-
T Consensus 25 ~vs~~i~~Ge~~~ilGpnGsGKSTLl~~i~G~~ 57 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCEEEEECCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 977899188099999899960999999996789
No 170
>PRK08118 topology modulation protein; Reviewed
Probab=95.19 E-value=0.052 Score=33.61 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=33.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCE----EEEECCCCCHHHHHHHHHH
Q ss_conf 50375266788999999998740789838----9931246522388999986
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCFDKV----IISLVGERGREVREFIEDY 209 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~dv~----V~alIGeR~rev~efi~~~ 209 (438)
+|+.|+|.+|+|||||+..+++..+-.++ +|=.=|=..+.-.||.+..
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w~~~w~~~~~~e~~~~~ 53 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQRTVQ 53 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHH
T ss_conf 6799988999879999999999889697964434766899468889999999
No 171
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.014 Score=37.69 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+.++|.|.+|+|||||+.+|+.-
T Consensus 29 ~Isl~i~~GE~v~iiG~nGsGKSTL~r~l~gl 60 (281)
T PRK13633 29 DVNLEVKKGEFLVILGHNGSGKSTIAKHMNAL 60 (281)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 40768879989999999998499999999758
No 172
>KOG1969 consensus
Probab=95.19 E-value=0.1 Score=31.58 Aligned_cols=86 Identities=23% Similarity=0.308 Sum_probs=56.0
Q ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHHHC-C-CC----CCEEEEEECCCCCH---H
Q ss_conf 8503752-6678899999999874078983899312465223-8899998642-7-75----53289841577880---3
Q gi|254780684|r 161 GQRIGVF-AGSGIGKSTLLSMFARSDCFDKVIISLVGERGRE-VREFIEDYLG-D-NL----KKSVVVVATSDESP---I 229 (438)
Q Consensus 161 GQR~gIf-g~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~re-v~efi~~~~~-~-~l----~~tvvv~~t~d~~~---~ 229 (438)
-||+++. |++|.|||||++.||+++.--|+=+-+-.||.-+ +++-++.... + .+ .-+|+|+---|-.| +
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~V 404 (877)
T KOG1969 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAV 404 (877)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 40068753688787247999999862854887325554347889999999886411225688863599842468728999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 44444456777888864
Q gi|254780684|r 230 LRKMAPLTAVTIAEYFS 246 (438)
Q Consensus 230 ~r~~a~~~a~~iAEyfr 246 (438)
--++.-.-|.-.+++..
T Consensus 405 dvilslv~a~~k~~~Gk 421 (877)
T KOG1969 405 DVILSLVKATNKQATGK 421 (877)
T ss_pred HHHHHHHHHHCCHHHCC
T ss_conf 99999997416142168
No 173
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.18 E-value=0.28 Score=28.31 Aligned_cols=84 Identities=30% Similarity=0.281 Sum_probs=43.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC--CCHHH----------HHHHHHHHCCCC-CCEEEEEECCCCC
Q ss_conf 8503752667889999999987407898389931246--52238----------899998642775-5328984157788
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGE--RGREV----------REFIEDYLGDNL-KKSVVVVATSDES 227 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGe--R~rev----------~efi~~~~~~~l-~~tvvv~~t~d~~ 227 (438)
|.=+-|.|+||+||++|+..+.+....-..++-..=- |..|+ .+|-+......+ .+.-+
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~~~~-------- 72 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEV-------- 72 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEEEE--------
T ss_conf 939999899988999999999976899448870446897998778873478508999999864964887677--------
Q ss_pred HHHHHHHHHHHHHHHH--HHHHCCCCEEEEEE
Q ss_conf 0344444456777888--86426798899970
Q gi|254780684|r 228 PILRKMAPLTAVTIAE--YFSSKGDNVLLILD 257 (438)
Q Consensus 228 ~~~r~~a~~~a~~iAE--yfr~~G~~Vll~~D 257 (438)
..-+.|++..+ -..++|+.|++-+|
T Consensus 73 -----~g~~YGt~~~~i~~~~~~gk~vil~id 99 (180)
T TIGR03263 73 -----HGNYYGTPKSPVEEALAAGKDVLLEID 99 (180)
T ss_pred -----CCCCCCCCHHHHHHHHHHCCCEEEECC
T ss_conf -----167635747999999960998999878
No 174
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.13 Score=30.69 Aligned_cols=56 Identities=38% Similarity=0.412 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHH-HHCCCCCEEEEECCCCC
Q ss_conf 001112458752002--2358503752667889999999987-40789838993124652
Q gi|254780684|r 143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFA-RSDCFDKVIISLVGERG 199 (438)
Q Consensus 143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~-~~~~~dv~V~alIGeR~ 199 (438)
..+.||+.-+|-.+= +++|.=++|=|++|.||||||-|++ +.++...+.| -.||-.
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLY-VsGEES 131 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLY-VSGEES 131 (456)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE-EECCCC
T ss_conf 42357818887653677236617997368987798999999999870595799-967767
No 175
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.014 Score=37.88 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=29.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.-+.+-+|+.++|.|.+|+|||||+.+|+.--
T Consensus 25 ~isl~i~~GE~vaivG~nGsGKSTL~k~l~Gl~ 57 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 307688799899999999965999999997288
No 176
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.014 Score=37.77 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=31.1
Q ss_pred HHH-HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 587-520022358503752667889999999987407898
Q gi|254780684|r 150 RVI-DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 150 r~I-D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
+++ |.=+.+-+|.-++|+|+||+|||||+.+|+.-...+
T Consensus 16 ~~l~~is~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p~ 55 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD 55 (239)
T ss_pred EEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 9986638698899899999999977999999997699998
No 177
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.16 E-value=0.024 Score=36.03 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=29.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+-.+|+|++|+|||||+.+|+..-.
T Consensus 26 ~is~~i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~ 59 (269)
T PRK11831 26 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 59 (269)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7166887998999993999759999999967988
No 178
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.16 E-value=0.0087 Score=39.28 Aligned_cols=44 Identities=30% Similarity=0.478 Sum_probs=34.4
Q ss_pred CCHHHHHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 00111245875-200223585037526678899999999874078
Q gi|254780684|r 143 KGFKTGIRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 143 e~L~TGIr~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
..+..|+.|+| .=+.+-+|.-++|.|+||+|||||+.+|+.--.
T Consensus 8 k~y~~~~~aL~~vsl~i~~Ge~v~i~GpSGsGKSTLl~~i~gl~~ 52 (214)
T cd03292 8 KTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEECCCCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 997989899822177985998999997999539999999962989
No 179
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.015 Score=37.61 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=28.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|++++|.|.+|+|||||+..|.+.-
T Consensus 20 ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 608998799999999899982999999996676
No 180
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=95.14 E-value=0.018 Score=37.08 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=90.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEE------ECCCCCHHHHHHH-HHHHCCCCCCEEEEE---E
Q ss_conf 52002235850375266788999999998740789838993------1246522388999-986427755328984---1
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIIS------LVGERGREVREFI-EDYLGDNLKKSVVVV---A 222 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~a------lIGeR~rev~efi-~~~~~~~l~~tvvv~---~ 222 (438)
|.=+.|-+|-=+.|+|.||.||||||-.|+|=.++|...=+ -|=--+.|+...- ...+..-..++-+|+ |
T Consensus 20 ~inl~i~~GE~~~~IG~SGAGKSTLLR~iNrL~~Gdk~~~Geilidf~i~~~g~~i~~~~~~k~LR~~R~~igMIFQ~yN 99 (253)
T TIGR02315 20 NINLEINPGEFVAVIGPSGAGKSTLLRCINRLVEGDKPSSGEILIDFSILLEGTDITKLRRGKKLRKLRRKIGMIFQHYN 99 (253)
T ss_pred EECCEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEHHHH
T ss_conf 31143416517999737887267999877530268888765089888888727318767548899999764350110102
Q ss_pred C-CCCCHHHHHHHHHHHHH--HHHHHH-HCCC---CEEEEEE--CHHHHH------------------HHHH--HHHHHC
Q ss_conf 5-77880344444456777--888864-2679---8899970--989999------------------9987--665404
Q gi|254780684|r 223 T-SDESPILRKMAPLTAVT--IAEYFS-SKGD---NVLLILD--SITRFA------------------HSIR--EIATNS 273 (438)
Q Consensus 223 t-~d~~~~~r~~a~~~a~~--iAEyfr-~~G~---~Vll~~D--s~tr~a------------------~A~r--eis~~~ 273 (438)
- ...++++-++.+..|.. +.-.|. ...+ ..|=.+| .|..+| +|+- --=++.
T Consensus 100 Li~R~~VL~NVL~GRLg~~~~~~~~~~~F~~~dk~~Al~~L~rVGl~~~A~~RaD~LSGGQQQRVaIARAL~Q~P~lILA 179 (253)
T TIGR02315 100 LIERLTVLENVLHGRLGYKSTWRSLLGRFSEEDKERALSLLERVGLADKAYQRADQLSGGQQQRVAIARALAQQPKLILA 179 (253)
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 37830366764214321450345563258998999999876523878898652132158511689999863689958970
Q ss_pred CCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHH
Q ss_conf 77843236632455420044444311367885235543334216764202789998612608987042
Q gi|254780684|r 274 GELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRS 341 (438)
Q Consensus 274 ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~ 341 (438)
.||-+. -=|---...-.++=|.. .+ =-||+| |-...=|+.---+|-+.++=+|+||+|-.
T Consensus 180 DEPiAS--LDP~~s~~VMd~lk~In--~e--~GIT~i--~NLH~VdlA~~Y~dRivGL~~G~iVFDG~ 239 (253)
T TIGR02315 180 DEPIAS--LDPKTSKQVMDYLKRIN--KE--DGITVI--VNLHQVDLAKKYADRIVGLKAGEIVFDGA 239 (253)
T ss_pred CCCCCC--CCHHHHHHHHHHHHHHH--HH--CCCEEE--EECCCHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf 488433--67567899999999988--77--697799--97461787887633776666672145378
No 181
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.13 E-value=0.015 Score=37.54 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=29.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|..++|+|++|+|||||+.+|+.-..
T Consensus 27 ~vs~~i~~GE~v~iiG~sGsGKSTLl~~i~Gl~~ 60 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6289988998999999999409999999966999
No 182
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.13 E-value=0.29 Score=28.21 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=51.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC------C-CCCEEEEEECCCCCHHHH
Q ss_conf 358503752667889999999987407898389931246522388999986427------7-553289841577880344
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGD------N-LKKSVVVVATSDESPILR 231 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~------~-l~~tvvv~~t~d~~~~~r 231 (438)
..+.=..|-|++|-||||++++-.+... . +.-.-+.+.-++...|+..+... + ....-......+.+....
T Consensus 30 ~~~~l~lv~APaG~GKTtl~a~w~~~~~-~-~~Wlsld~~d~~~~~f~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 30 NNYRLVLVRSPAGYGKTTLASQWAAGKN-N-VGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAEKRQYASLTS 107 (903)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC-C-EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHH
T ss_conf 5899799977999889999999983499-8-5998588544899999999999999856543311231135566554999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH--HHHHHHHHHCCCCC
Q ss_conf 44445677788886426798899970989999--99876654047784
Q gi|254780684|r 232 KMAPLTAVTIAEYFSSKGDNVLLILDSITRFA--HSIREIATNSGELP 277 (438)
Q Consensus 232 ~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a--~A~reis~~~ge~P 277 (438)
.. + .+..-..+.+..+.||+||.-... ....-+..++...|
T Consensus 108 ~~----~-~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~~p 150 (903)
T PRK04841 108 LF----A-QLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred HH----H-HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99----9-9999975589986999868364888689999999998389
No 183
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.13 E-value=0.013 Score=37.98 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+.++|+|.+|+|||||+.+|+.--
T Consensus 12 ~Vsl~i~~Ge~vaiiG~sGsGKSTLl~~l~GLl 44 (276)
T PRK13634 12 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL 44 (276)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 447799899899999999969999999997499
No 184
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.13 E-value=0.017 Score=37.10 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=27.0
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 002235850375266788999999998740
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
=+.+-+|...+|+|++|+|||||+.+|+.-
T Consensus 21 sl~i~~Ge~~aliG~sGsGKSTLl~~l~gl 50 (248)
T PRK11264 21 DLEVKPGEVVAIIGPSGSGKTTLLRCINLL 50 (248)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 779879989999999998099999999758
No 185
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.12 E-value=0.016 Score=37.30 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8752-002235850375266788999999998740789
Q gi|254780684|r 151 VIDI-FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 151 ~ID~-l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
+++. =+.+-+|++++|.|.+|+|||||+..|.+.-+.
T Consensus 357 vL~~isl~I~~G~~vaiVG~SGsGKSTL~~LL~gly~p 394 (581)
T PRK11176 357 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 394 (581)
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 01066335799944312289998678999999853667
No 186
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.11 E-value=0.016 Score=37.38 Aligned_cols=35 Identities=34% Similarity=0.418 Sum_probs=29.5
Q ss_pred HH-HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 87-520022358503752667889999999987407
Q gi|254780684|r 151 VI-DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 151 ~I-D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|+ |.=+++-+|..+||+|+.|.|||||+.+|+..-
T Consensus 39 AL~dVsf~i~~GEivgllG~NGaGKSTLlk~I~Gl~ 74 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 952707888599899999899861999999996798
No 187
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.015 Score=37.48 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=30.2
Q ss_pred HHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 245875-20022358503752667889999999987407
Q gi|254780684|r 148 GIRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 148 GIr~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.+++++ .=+.+-+|+.++|.|.+|+|||||+.+|+.--
T Consensus 19 ~v~aL~~is~~i~~Ge~~aiiG~sGsGKSTL~~~l~Gl~ 57 (277)
T PRK13642 19 DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 886644307998899899999999968999999996389
No 188
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.10 E-value=0.016 Score=37.33 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=28.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+-++|+|++|+|||||+.+|+.-
T Consensus 19 ~vsl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl 50 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 31788849979999889999899999999646
No 189
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.10 E-value=0.017 Score=37.17 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=30.5
Q ss_pred HHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 875-200223585037526678899999999874078
Q gi|254780684|r 151 VID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 151 ~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
++| .=+.+-+|++++|.|.+|+|||||+..|.+...
T Consensus 365 vL~~is~~i~~Ge~vaIVG~SGsGKSTl~~LL~g~~p 401 (588)
T PRK11174 365 LAGPLNFTLPAGQRVALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred ECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 1036469974997899989998649999999987289
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.09 E-value=0.059 Score=33.22 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 0011124587520022358503752-667889999999987407--8983899312465223889999864277553289
Q gi|254780684|r 143 KGFKTGIRVIDIFTPLCHGQRIGVF-AGSGIGKSTLLSMFARSD--CFDKVIISLVGERGREVREFIEDYLGDNLKKSVV 219 (438)
Q Consensus 143 e~L~TGIr~ID~l~pig~GQR~gIf-g~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvv 219 (438)
..|.+-..-.+.|-. |..-+|| |++|+|||.|+..|++.. ..-.++|. .+.++++.+...
T Consensus 80 ~al~~a~~y~enf~~---~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~-------t~~dLl~~lr~t------- 142 (242)
T PRK07952 80 NALSKARQYVEEFDG---NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-------TVADIMSAMKDT------- 142 (242)
T ss_pred HHHHHHHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-------EHHHHHHHHHHH-------
T ss_conf 999999999986543---887179978999978999999999999879949997-------799999999999-------
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 84157788034444445677788886426798899970989
Q gi|254780684|r 220 VVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 220 v~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
...++. +-.+.++.--+--|||+||+-
T Consensus 143 -~~~~~~-------------~e~~~l~~l~~~dLLIiDdlG 169 (242)
T PRK07952 143 -FRNSET-------------SEEQLLNDLSNVDLLVIDEIG 169 (242)
T ss_pred -HHCCCC-------------CHHHHHHHHHCCCEEEEECCC
T ss_conf -806875-------------699999986318989873014
No 191
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.09 E-value=0.016 Score=37.38 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=30.1
Q ss_pred HHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 45875-20022358503752667889999999987407
Q gi|254780684|r 149 IRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 149 Ir~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
++|+| .=+++-+|+.++|+|+.|+|||||+.+|+.-.
T Consensus 35 ~~AL~~isf~i~~GeivgilG~NGaGKSTLl~~i~Gl~ 72 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 69876707898389899999799981999999997587
No 192
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.09 E-value=0.018 Score=37.08 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=29.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|++++|.|.+|+|||||+..+.+.-+
T Consensus 353 ~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~gly~ 386 (585)
T PRK13657 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLHRVFD 386 (585)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7038975998899988989869999999860157
No 193
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.08 E-value=0.02 Score=36.73 Aligned_cols=34 Identities=38% Similarity=0.489 Sum_probs=29.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|++++|.|.+|+|||||+..|.+.-+
T Consensus 333 ~isl~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~ 366 (569)
T PRK10789 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred CCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7656888997899879999987999999997764
No 194
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.015 Score=37.48 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.-+.+-+|..++|.|.+|+|||||+.+|+.--.
T Consensus 22 ~vsl~i~~GE~vaivG~nGsGKSTL~~~l~Gll~ 55 (276)
T PRK13650 22 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE 55 (276)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7587998998999999999879999999973889
No 195
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.027 Score=35.70 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=29.8
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+-+|+..+|+|++|+|||||+.+|+.....+
T Consensus 25 ~is~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~ 60 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN 60 (202)
T ss_pred CEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 708898098499999899998899999983787898
No 196
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.06 E-value=0.016 Score=37.30 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+++-+|++++|.|++|+|||||+..|.+.-+
T Consensus 341 ~isl~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~ 374 (547)
T PRK10522 341 PINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8047985998899989999977999999828966
No 197
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.05 E-value=0.017 Score=37.11 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=28.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+..+|.|++|+|||||+.+|+.-
T Consensus 18 ~vsl~i~~Gei~~iiG~nGaGKSTLl~~i~Gl 49 (205)
T cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 03788869989999889999899999999568
No 198
>PRK07261 topology modulation protein; Provisional
Probab=95.03 E-value=0.059 Score=33.24 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCE----EEEECCCCCHHHHHHHHHHHC
Q ss_conf 0375266788999999998740789838----993124652238899998642
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKV----IISLVGERGREVREFIEDYLG 211 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~----V~alIGeR~rev~efi~~~~~ 211 (438)
|+.|+|.+|.|||||+..+++..+-.++ +|-.=|-..+.-.||.+....
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~p~w~~~~~~e~~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFSSNWQERDDDDMIADISN 54 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEECCCCEECCHHHHHHHHHH
T ss_conf 89998899986899999999987979797022788899988889999999999
No 199
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.01 E-value=0.023 Score=36.29 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+.+|+..+|+|++|+|||||+.+|+..-.
T Consensus 22 ~vs~~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3078987997999998999889999999966888
No 200
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.01 E-value=0.16 Score=30.10 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=52.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC-HHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 375266788999999998740789838993124652-2388999986427-75532898415778803444444567778
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERG-REVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLTAVTI 241 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~-rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~i 241 (438)
++|.||+.+|||.++-.++...... .+|.+-++.. .|.++=|+.++.. +-.-. |-.+| ..+
T Consensus 2 iLVtGG~rSGKS~~AE~la~~~~~~-~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w~-----TiE~~-----------~~l 64 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGP-VTYIATAEAFDDEMAERIARHRKRRPAHWR-----TIETP-----------RDL 64 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCE-----EEECC-----------CCH
T ss_conf 8997786636899999999845998-199978898898999999999966899966-----99634-----------439
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 8886426798899970989999998
Q gi|254780684|r 242 AEYFSSKGDNVLLILDSITRFAHSI 266 (438)
Q Consensus 242 AEyfr~~G~~Vll~~Ds~tr~a~A~ 266 (438)
++.++....+-.+++|++|.|.--.
T Consensus 65 ~~~l~~~~~~~~vLiDclt~wl~N~ 89 (169)
T cd00544 65 VSALKELDPGDVVLIDCLTLWVTNL 89 (169)
T ss_pred HHHHHHCCCCCEEEEECHHHHHHHH
T ss_conf 9999855988859986078999998
No 201
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.01 E-value=0.017 Score=37.14 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=29.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|++++|.|.+|+|||||+..|+..-.
T Consensus 22 ~isl~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~ 55 (221)
T cd03244 22 NISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 4489986998999999999989999999967971
No 202
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.00 E-value=0.019 Score=36.84 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=27.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.-+.+-.|.-+-++|+|||||||||.|||--
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 32689747979999899988889999999688
No 203
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.00 E-value=0.018 Score=37.02 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+..+|+|.+|+|||||+.+|+.-
T Consensus 25 ~vsl~I~~Ge~~aiiG~nGsGKSTLl~~l~GL 56 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 41779869989999999998199999999707
No 204
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.00 E-value=0.021 Score=36.51 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=80.0
Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCEEEE-ECCCCCH--------HHHHHHHHHHC-CCCC--------
Q ss_conf 22358503752667889999999987407---89838993-1246522--------38899998642-7755--------
Q gi|254780684|r 157 PLCHGQRIGVFAGSGIGKSTLLSMFARSD---CFDKVIIS-LVGERGR--------EVREFIEDYLG-DNLK-------- 215 (438)
Q Consensus 157 pig~GQR~gIfg~~GvGKt~Ll~~i~~~~---~~dv~V~a-lIGeR~r--------ev~efi~~~~~-~~l~-------- 215 (438)
++-+|..++|+|++|+|||||+.+|+..- .+.+.+.. -|+.... .+.+++..... .+..
T Consensus 21 ti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~~e~~ 100 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIA 100 (246)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 46579899999799976999999997787888607998982057687433257772799999988643121279999999
Q ss_pred CEEEEEEC-----CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH--HHHHHHHCCCCCCCCCCCHHH--
Q ss_conf 32898415-----778803444444567778888642679889997098999999--876654047784323663245--
Q gi|254780684|r 216 KSVVVVAT-----SDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHS--IREIATNSGELPVARGYPTSV-- 286 (438)
Q Consensus 216 ~tvvv~~t-----~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A--~reis~~~ge~P~~~gyp~~~-- 286 (438)
+.+=+..- .+-|-++|-+. ..|+++| +.-+ ++++|-=|.+-+. ..|+--.+.+.--..+-+ -+
T Consensus 101 ~~l~l~~~~~r~~~~LSGGqkQRv-~iA~aL~-----~~p~-ilLLDEPts~LD~~~~~~i~~~i~~l~~~~~~T-vi~V 172 (246)
T cd03237 101 KPLQIEQILDREVPELSGGELQRV-AIAACLS-----KDAD-IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT-AFVV 172 (246)
T ss_pred HHCCCHHHHCCCHHHCCHHHHHHH-HHHHHHH-----CCCC-EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEE
T ss_conf 884995676487002898599999-9999984-----1999-999848987689999999999999999867989-9998
Q ss_pred ---HHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf ---542004444431136788523554333421676420278999861260898704277589713114456400
Q gi|254780684|r 287 ---FSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVS 358 (438)
Q Consensus 287 ---~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~S 358 (438)
.....++..|--.. ++.|++-+.. +|.+.+++|.-..+ +-.|..+.-+.. --.|-||+..|.+
T Consensus 173 tHDl~~a~~~aDrIivl-~G~g~i~~~g---~p~ev~~~~~~~~v-~~~~~~v~~~p~----~g~P~i~~~~s~~ 238 (246)
T cd03237 173 EHDIIMIDYLADRLIVF-EGEPSVNGVA---NPPQSLRSGMNRFL-KNLDITFRRDPE----TGRPRINKLGSVK 238 (246)
T ss_pred CCCHHHHHHHCCEEEEE-CCCCEEEEEE---CCHHHHCHHHHHHH-HCCCCEEEECCC----CCCCCCCCCCCCC
T ss_conf 37899999869999998-1886499998---97687262888998-739768984899----9997588887512
No 205
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.015 Score=37.54 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|..++|.|.||+|||||+.+|+.-..
T Consensus 23 ~vsl~i~~Ge~~~ivG~SGsGKSTllr~i~gL~~ 56 (233)
T cd03258 23 DVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8288999999999988980589999999967999
No 206
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.017 Score=37.17 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.8
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|..++|+|++|+|||||+.+++.-
T Consensus 26 ~vsl~I~~Ge~vaiiG~nGsGKSTL~~~l~Gl 57 (283)
T PRK13640 26 DVSFSIPRGSWTALIGHNGSGKSTISKLINGL 57 (283)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 71869989999999999998799999999640
No 207
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.99 E-value=0.017 Score=37.26 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=28.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|++++|.|.+|+|||||+..|...-
T Consensus 22 ~isl~i~~G~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 459998799999999999985999999996725
No 208
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.98 E-value=0.018 Score=36.94 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=29.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+.+|..++|+|++|+|||||+.+|+.-..
T Consensus 19 dvs~~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~ 52 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 3078987998999999999809999999963899
No 209
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.96 E-value=0.019 Score=36.76 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.-+.+-+|+.++|.|++|+|||||+.+|+....
T Consensus 19 ~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 52 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5177987998999999999859999999976888
No 210
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.96 E-value=0.019 Score=36.90 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=28.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+.++|+|++|+|||||+.+|+.-.
T Consensus 20 dvsl~i~~Ge~~~iiG~nGaGKSTLl~~l~gl~ 52 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 207788799899999999971999999996588
No 211
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.91 E-value=0.036 Score=34.77 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=70.2
Q ss_pred HHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 4587520-02235850375266788999999998740789-838993124652238899998642775532898415778
Q gi|254780684|r 149 IRVIDIF-TPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF-DKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDE 226 (438)
Q Consensus 149 Ir~ID~l-~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~-dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~ 226 (438)
++++|.+ +++-+||.+||.|.||+|||||-.++.+--.. ..+.| -|++ +..+-...+..-..+--+|+-.-.-
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F--~G~~---i~~~~~~~mrplR~~mQvVFQDPyg 374 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRF--DGQD---IDGLSRKEMRPLRRRMQVVFQDPYG 374 (534)
T ss_pred EEEECCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEE--CCCC---CCCCCHHHHHHHHHHCEEEEECCCC
T ss_conf 0775254367538976777705889811599999852476863897--8811---6664856620355522699717877
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 80344444456777888864267988999709899999987665404778432366324554
Q gi|254780684|r 227 SPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFS 288 (438)
Q Consensus 227 ~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~ 288 (438)
|---|. .++--|+|-++=.+.+. ==.+-..|.+.|++|+++ .|.++.-||.- ||
T Consensus 375 SLsPRm---tV~qII~EGL~vh~~~l-s~~eR~~rv~~aL~EVGL---Dp~~r~RYPhE-FS 428 (534)
T COG4172 375 SLSPRM---TVGQIIEEGLRVHEPKL-SAAERDQRVIEALEEVGL---DPATRNRYPHE-FS 428 (534)
T ss_pred CCCCCC---CHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCC---CHHHHHCCCCC-CC
T ss_conf 788434---89998642141158789-878899999999998299---94575238865-68
No 212
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.91 E-value=0.019 Score=36.77 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.2
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 20022358503752667889999999987407
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.=+.+.+|..++|+|++|.|||||+.+|+.--
T Consensus 23 isl~i~~GE~~~iiGpNGaGKSTLlk~i~Gll 54 (262)
T PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 27898799899999899960999999997567
No 213
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.90 E-value=0.022 Score=36.43 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=28.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+..+|.|++|+|||||+.+|+.-.
T Consensus 18 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 50 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 307888799599999999999999999996677
No 214
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.90 E-value=0.02 Score=36.63 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-.|+.++|.|+.|+|||||+..|+.--.
T Consensus 29 ~isf~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~~ 62 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6388981898999999999879999999976977
No 215
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.89 E-value=0.026 Score=35.79 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|++++|.|.+|+|||||+..+.+.-+
T Consensus 359 ~is~~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 392 (593)
T PRK10790 359 NINLSVPSRNFVALVGHTGSGKSTLASLLMGYYP 392 (593)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6010448997899879998868999999998556
No 216
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=94.89 E-value=0.17 Score=29.91 Aligned_cols=96 Identities=26% Similarity=0.260 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC--CCEEEEECCCCCH--HHHHHHHH-----HHCCCCCCEEEEEECCCCCHH
Q ss_conf 35850375266788999999998740789--8389931246522--38899998-----642775532898415778803
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCF--DKVIISLVGERGR--EVREFIED-----YLGDNLKKSVVVVATSDESPI 229 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~~~--dv~V~alIGeR~r--ev~efi~~-----~~~~~l~~tvvv~~t~d~~~~ 229 (438)
+..+=+.|.|.+++|||+|+...++.... ..+||..+-+... .+.+|... .+......... ..+
T Consensus 18 ~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~- 90 (223)
T pfam01637 18 GTYPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGI------AKS- 90 (223)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCC-
T ss_conf 9971899986887879999999998633468528999514443799999888889999998765123322------211-
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 4444445677788886426798899970989999
Q gi|254780684|r 230 LRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263 (438)
Q Consensus 230 ~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a 263 (438)
.....+--.+-++..+.|+++++++|.....+
T Consensus 91 --~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~ 122 (223)
T pfam01637 91 --KLAFLSLTLLFELLKRKGKKIAIIIDEVQYAI 122 (223)
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf --20788999999999855996599970167764
No 217
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.89 E-value=0.018 Score=37.02 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=27.3
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 2002235850375266788999999998740
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
.=+.+-+|+.++|.|.+|+|||||+.+|+.-
T Consensus 29 isl~i~~Ge~vaivG~nGsGKSTLlk~l~Gl 59 (273)
T PRK13632 29 VSFTINEGEYVAILGHNGSGKSTISKILTGL 59 (273)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2889849989999999998699999999738
No 218
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.86 E-value=0.02 Score=36.61 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=27.8
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 20022358503752667889999999987407
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.=+.+-+|+..+|+|++|+|||||+.+|+...
T Consensus 30 vsl~i~~Ge~~~liG~NGaGKSTLl~~l~gl~ 61 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 08898799899999999980999999995688
No 219
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.86 E-value=0.019 Score=36.86 Aligned_cols=38 Identities=29% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 458752-00223585037526678899999999874078
Q gi|254780684|r 149 IRVIDI-FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 149 Ir~ID~-l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.+++|. =+.+-+|+..+|.|++|+|||||+.+|+.--.
T Consensus 17 ~~aL~~is~~i~~Ge~~aliG~NGaGKSTLl~~i~Gll~ 55 (277)
T PRK13652 17 KEALNNINFIAGRKQRIAVIGPNGAGKSTLFKHFNGILK 55 (277)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 879867287998998999999999479999999966999
No 220
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.84 E-value=0.041 Score=34.42 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+++-+|+-.+|+|++|.|||||+.+|+.....+
T Consensus 18 ~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~ 53 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR 53 (222)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 408998899899999999985999999997798899
No 221
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.054 Score=33.50 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=38.2
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC--CEEEEE---CCCCCHHHHHHHHH
Q ss_conf 20022358503752667889999999987407898--389931---24652238899998
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD--KVIISL---VGERGREVREFIED 208 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d--v~V~al---IGeR~rev~efi~~ 208 (438)
.-+.|-+|+.+.|+|.||.|||||+.+|++-.+.. .+.+-. .+-+++|.+.+..+
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHCCCHHHHHHHHHH
T ss_conf 767757986899987888868999999866658886159965622102545789999974
No 222
>PRK13542 consensus
Probab=94.83 E-value=0.044 Score=34.15 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 002235850375266788999999998740789
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
=+.+-+|+.++|.|+.|.|||||+..|+..-.-
T Consensus 38 sl~i~~Gei~~liGpNGaGKTTLlk~l~Gll~p 70 (224)
T PRK13542 38 DISLAPGDLLQVMGPNGSGKTSLLRVLSGLMPP 70 (224)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 678759979999999999999999999579788
No 223
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=94.82 E-value=0.022 Score=36.43 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=24.6
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 022358503752667889999999987
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFA 182 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~ 182 (438)
+-|.+|--++|.|.||.||||||+.+.
T Consensus 26 l~i~~GE~~~IvG~SGSGKSTLLHlLG 52 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred CEEECCCEEEEECCCCCCHHHHHHHHH
T ss_conf 123066337987367871689999873
No 224
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.80 E-value=0.023 Score=36.28 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=34.9
Q ss_pred HHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCCC
Q ss_conf 45875-20022358503752667889999999987407--8983899312465
Q gi|254780684|r 149 IRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD--CFDKVIISLVGER 198 (438)
Q Consensus 149 Ir~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR 198 (438)
++|+| .=+.|-+|..++|.|.+|+|||||+.+|+.-- +...+.+.+.+++
T Consensus 20 ~~AL~dvsl~I~~GE~v~IiG~nGsGKSTL~k~l~Gll~P~~G~V~~~g~d~~ 72 (304)
T PRK13651 20 LKALDGVSTEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIYFDEK 72 (304)
T ss_pred CEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 46863405798599899998799985999999996699988716999424543
No 225
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.80 E-value=0.02 Score=36.72 Aligned_cols=33 Identities=36% Similarity=0.458 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+.+|..++|.|++|+|||||+.+|+.-.
T Consensus 30 dIs~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~ 62 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 407588799899999899888999999996589
No 226
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=94.79 E-value=0.18 Score=29.66 Aligned_cols=106 Identities=20% Similarity=0.255 Sum_probs=60.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC-HHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 375266788999999998740789838993124652-2388999986427-75532898415778803444444567778
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERG-REVREFIEDYLGD-NLKKSVVVVATSDESPILRKMAPLTAVTI 241 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~-rev~efi~~~~~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~i 241 (438)
++|.||+.+|||.++-.++..... -++|.+-++.. .|..+=|+.++.. +-.-.++ ..| .-+
T Consensus 1 iLVtGG~rSGKS~~AE~la~~~~~-~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w~ti-----E~~-----------~~l 63 (166)
T pfam02283 1 ILVTGGARSGKSRFAERLALASGG-PVVYIATAQAFDDEMAERIARHRARRPAGWTTI-----EEP-----------LDL 63 (166)
T ss_pred CEEECCCCCCHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE-----ECC-----------CCH
T ss_conf 988688773389999999985599-819997698888899999999997189996799-----774-----------459
Q ss_pred HHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHH
Q ss_conf 888642-67988999709899999987665404778432366324554200444443
Q gi|254780684|r 242 AEYFSS-KGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERI 297 (438)
Q Consensus 242 AEyfr~-~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERa 297 (438)
++.++. .+.+ .+++|++|.|.--.= ...+ -+.++......|++.-
T Consensus 64 ~~~l~~~~~~~-~vLiDclt~wl~N~l----~~~~------~~~~~~~~~~~ll~~l 109 (166)
T pfam02283 64 AEALARLPGGD-VVLVDCLTLWLTNLL----FAGD------DEEDIEAEVDELLAAL 109 (166)
T ss_pred HHHHHHCCCCC-EEEEECHHHHHHHHH----HCCC------CHHHHHHHHHHHHHHH
T ss_conf 99998469898-699971778999987----6237------4778999999999999
No 227
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.77 E-value=0.023 Score=36.26 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=27.8
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 20022358503752667889999999987407
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.=+.+-+|+..+|+|+.|+|||||+.+|+..-
T Consensus 18 is~~i~~Ge~~~liGpNGaGKSTllk~i~Gl~ 49 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 27898599899999999986999999997687
No 228
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.74 E-value=0.024 Score=36.09 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=32.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEE
Q ss_conf 5200223585037526678899999999874078--9838993
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIIS 193 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~a 193 (438)
|.-+.+-+||-.+|.|++|+|||||+.+|+..-. ...+.|-
T Consensus 19 ~is~~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~~ 61 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61 (200)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 2278987997999988999879999999977858898569999
No 229
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.74 E-value=0.023 Score=36.19 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=31.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEE
Q ss_conf 5200223585037526678899999999874078--98389931
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISL 194 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~al 194 (438)
|.=+.|-+|++++|.|.+|+|||||+..+.+--+ ...+.+-.
T Consensus 39 ~inl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg 82 (257)
T cd03288 39 HVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDG 82 (257)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 53899879999999999998199999999605667888899998
No 230
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.73 E-value=0.035 Score=34.86 Aligned_cols=49 Identities=27% Similarity=0.236 Sum_probs=35.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 5200223585037526678899999999874078983899312465223
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGRE 201 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~re 201 (438)
|.-++|-.|-=.-++|+||+||||+|.||+|--.-+.--+-.=||.-++
T Consensus 19 ~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 19 DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred EEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 2257765972899987899757879999960558888538989904465
No 231
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=94.73 E-value=0.032 Score=35.19 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=54.5
Q ss_pred HCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CCHHHHHHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 0478877755530121125433300013311-0011124587520-022358503752667889999999987407898
Q gi|254780684|r 112 PIDGDDSLGKGDLSMEIMSKVPPAMNRQRVE-KGFKTGIRVIDIF-TPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 112 PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~-e~L~TGIr~ID~l-~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
-||..+....+ +.++.+++-+-.+-+-++ +-=.+|++++|.. +-+--||.+.+.|-||+|||||..+|-|.=+-|
T Consensus 339 ~lD~~~E~D~G--~~~~~RPv~G~~eFR~v~~~Yp~~~~~aL~~i~l~~~~G~~vALVGRSGSGKsTlv~LlPRFy~p~ 415 (603)
T TIGR02203 339 LLDSPPEKDTG--TRALERPVRGRVEFRNVTFRYPGRDRPALDSISLVVEPGETVALVGRSGSGKSTLVNLLPRFYEPD 415 (603)
T ss_pred HCCCCCCCCCC--CCCCCCCCEEEEEEEEEEEEECCCCHHHHCCCCCEECCCCEEEEECCCCCHHHHHHHHCCCCCCCC
T ss_conf 12788543478--826888511248887666653788724123666511587359987068853899985523660458
No 232
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.72 E-value=0.024 Score=36.08 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=28.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.|--|++++|.|.||+|||||+.++..--
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 502776799889998799998899999983678
No 233
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.72 E-value=0.35 Score=27.60 Aligned_cols=55 Identities=27% Similarity=0.292 Sum_probs=22.3
Q ss_pred CEEEEEECHHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEE
Q ss_conf 8899970989999998766--540477843236632455420044444311367885235
Q gi|254780684|r 251 NVLLILDSITRFAHSIREI--ATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNIT 308 (438)
Q Consensus 251 ~Vll~~Ds~tr~a~A~rei--s~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT 308 (438)
++.+-+.+++... ....| +...||+-+--|--|+=-+.+.+++ +|-.....|+|+
T Consensus 255 ~~~l~~~~l~~~~-~~~~vsl~v~~GEivgivG~nGsGKSTL~k~L--~Gl~~p~~G~I~ 311 (501)
T PRK11288 255 DVRLRLKGLKGPG-LREPISFAVRRGEIVGFFGLVGAGRSELMKLL--YGATRRTAGQVY 311 (501)
T ss_pred CEEEEEEECCCCC-CCCCEEEEEECCEEEEEECCCCCCHHHHHHHH--CCCCCCCCCEEE
T ss_conf 4379998503787-45663478708839997568886487999984--387488766599
No 234
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.72 E-value=0.025 Score=35.97 Aligned_cols=17 Identities=12% Similarity=-0.068 Sum_probs=8.5
Q ss_pred EECCCCCCCCCCEEEEE
Q ss_conf 98268888735189995
Q gi|254780684|r 36 VTCLSQYVCLGDFVVHQ 52 (438)
Q Consensus 36 v~Gl~~~v~iGelv~i~ 52 (438)
.++++-.+.-||.+-+-
T Consensus 23 L~~vsl~i~~Ge~vgLv 39 (556)
T PRK11819 23 LKDISLSFFPGAKIGVL 39 (556)
T ss_pred EECCEEEECCCCEEEEE
T ss_conf 98818999689899999
No 235
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.72 E-value=0.028 Score=35.56 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 3585037526678899999999874078
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
=+|+-.+|+|++|+|||||+.+|+..-.
T Consensus 24 k~GEi~gLiGpNGaGKSTLlk~i~Gll~ 51 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8980999989999709999999967986
No 236
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.69 E-value=0.032 Score=35.22 Aligned_cols=33 Identities=39% Similarity=0.594 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.-+++-.|.|+|+.|.-|+||||||..|+...
T Consensus 21 ~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CCCEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 784076899889998999898899999982997
No 237
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.69 E-value=0.027 Score=35.66 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=79.1
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEE--CCCCCHHHHHHHHHH----HCCC-CCCEEEEEECCC
Q ss_conf 00223585037526678899999999874078--98389931--246522388999986----4277-553289841577
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISL--VGERGREVREFIEDY----LGDN-LKKSVVVVATSD 225 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~al--IGeR~rev~efi~~~----~~~~-l~~tvvv~~t~d 225 (438)
=+.+-+|..+.|+|+||+|||||+-.|+.--. ...+.+.+ ++.+. ++..+.++. +.-. ..+-++.-|-.-
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~vGmVFQ~fnLFPH~TvleNv~l 100 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKVGMVFQQFNLFPHLTVLENVTL 100 (240)
T ss_pred CEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHH-HHHHHHHHCCEECCCCCCCCCCHHHHHHHH
T ss_conf 1167389789998999998889999997786887864999987225454-699999855766246654655329888777
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHC-CC-C-EEEEEECH-----HHHH--HHH--HHHHHHCCCCCCCCCCCHHHHHHCCHH
Q ss_conf 88034444445677788886426-79-8-89997098-----9999--998--766540477843236632455420044
Q gi|254780684|r 226 ESPILRKMAPLTAVTIAEYFSSK-GD-N-VLLILDSI-----TRFA--HSI--REIATNSGELPVARGYPTSVFSELPRL 293 (438)
Q Consensus 226 ~~~~~r~~a~~~a~~iAEyfr~~-G~-~-Vll~~Ds~-----tr~a--~A~--reis~~~ge~P~~~gyp~~~~~~~~~l 293 (438)
-|-..+-....-|-..|..+-++ |. | .=-.=+.| -|.| +|+ +---++..||-|. .-|-+-.+.-..
T Consensus 101 ap~~v~~~~k~eA~~~A~~lL~~VGL~dka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSA--LDPElv~EVL~v 178 (240)
T COG1126 101 APVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA--LDPELVGEVLDV 178 (240)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCC--CCHHHHHHHHHH
T ss_conf 539972989999999999999986955666539510480788999999987179988863697543--798899999999
Q ss_pred HHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEE
Q ss_conf 4443113678852355433342167642027899986126089870
Q gi|254780684|r 294 LERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLN 339 (438)
Q Consensus 294 ~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~ 339 (438)
+..- .+ .| +|.+ .|+-| =.|..-++|.+..+-+|.|+..
T Consensus 179 m~~L---A~-eG-mTMi-vVTHE-M~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 179 MKDL---AE-EG-MTMI-IVTHE-MGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred HHHH---HH-CC-CEEE-EEECH-HHHHHHHHHEEEEEECCEEEEE
T ss_conf 9999---97-69-8699-99503-6799986222899528889875
No 238
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.69 E-value=0.045 Score=34.12 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|.-++|+|++|+|||||+.+|+.-.
T Consensus 23 ~isl~i~~Gei~~iiG~sGsGKSTLl~~i~gl~ 55 (257)
T PRK10619 23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 606688799799999899981999999996599
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.023 Score=36.17 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|++++|.|.+|+|||||+..|...-.
T Consensus 21 ~inl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 54 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6299987999999999999809999999966866
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.68 E-value=0.23 Score=28.93 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=61.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 5850375266788999999998740-789838993124652238899998642775532898415778803444444567
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
+|.-+-+.|-||+|||||+..+.+. .+....++.+=|. ++++.. +...-+.-.|..-..-.
T Consensus 6 kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD---~lR~~~---------------~~~gfs~~~R~~n~~r~ 67 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD---ELREIF---------------GHSGYDKESRIEMALKR 67 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCH---HHHHHH---------------CCCCCCHHHHHHHHHHH
T ss_conf 867999789999989999999999999759977998868---999873---------------65898999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 778888642679889997098999999
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDSITRFAHS 265 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A 265 (438)
..+|.++.+||..|++-+=|..+-.++
T Consensus 68 ~~lak~l~~~g~~vIvs~isp~~~~R~ 94 (176)
T PRK05541 68 AKLAAFLADQGMIVIVTTISMFNEIYA 94 (176)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 999999864698036752279899999
No 241
>PRK04195 replication factor C large subunit; Provisional
Probab=94.68 E-value=0.18 Score=29.68 Aligned_cols=63 Identities=13% Similarity=0.335 Sum_probs=44.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHHHCC----CCCCEEEEEECCCC
Q ss_conf 37526678899999999874078983899312465223-88999986427----75532898415778
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGRE-VREFIEDYLGD----NLKKSVVVVATSDE 226 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~re-v~efi~~~~~~----~l~~tvvv~~t~d~ 226 (438)
+.+.|++|+|||+++..|++....+++=+=+-.+|+.+ +.+++...... +..+.+++.--.|.
T Consensus 43 lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~ 110 (403)
T PRK04195 43 LLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDG 110 (403)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 99889399879999999999849985997710114789999999987606887788734999634344
No 242
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.025 Score=36.00 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=30.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCEE
Q ss_conf 52002235850375266788999999998740---7898389
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKVI 191 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~V 191 (438)
|.-+.+-+|..++|.|.+|+|||||+..|+.- ..+.+.|
T Consensus 20 ~vsl~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G~I~v 61 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61 (274)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 117798489999999999980999999997068588872999
No 243
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.63 E-value=0.068 Score=32.80 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+++-+|.-.+|+|+.|+|||||+..|++.-.
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~ 53 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2368865997999989988899999999865678
No 244
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.62 E-value=0.025 Score=35.91 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=28.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+..+|.|++|+|||||+..|+.+
T Consensus 24 ~isl~i~~Gei~aiiG~nGsGKSTL~~~i~G~ 55 (252)
T CHL00131 24 GINLSINAGEIHAIMGPNGSGKSTLSKVIAGH 55 (252)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 61778879989999999999999999997278
No 245
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.62 E-value=0.024 Score=36.10 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=29.3
Q ss_pred HHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 5875-20022358503752667889999999987407
Q gi|254780684|r 150 RVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 150 r~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
+++| .=+.+-+|+..+|.|++|+|||||+.+|+..-
T Consensus 19 ~aL~~vs~~i~~Ge~~aiiG~NGsGKSTLl~~l~Gl~ 55 (273)
T PRK13647 19 KALDGVSLVIPEGSKTAILGPNGAGKSTLLLHLNGIY 55 (273)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8988117898899899999999975999999996698
No 246
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=94.62 E-value=0.038 Score=34.65 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=29.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEE----EEECCCCC
Q ss_conf 58503752667889999999987407898389----93124652
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVI----ISLVGERG 199 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V----~alIGeR~ 199 (438)
-|-=+.|.|+||.||||||+.++.....++-+ +.+=|++-
T Consensus 57 ~GeLlA~mGsSGAGKTTLmn~La~R~~~g~~~~g~~v~lNG~~~ 100 (671)
T TIGR00955 57 PGELLAIMGSSGAGKTTLMNALAFRSPKGLKVSGSVVLLNGRPI 100 (671)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCEECCCEEEECCEEC
T ss_conf 67068984787662689999985337478614683678758375
No 247
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.60 E-value=0.024 Score=36.07 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+..+|+|++|+|||||+.+|+..-
T Consensus 19 ~vsl~i~~Ge~~aliG~nGaGKSTLl~~i~G~l 51 (273)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKVLAGEL 51 (273)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 608899899899999999976999999995678
No 248
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.60 E-value=0.024 Score=36.08 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+++.+|+.++|+|+.|+|||||+.+|+.-.
T Consensus 15 ~isl~v~~Ge~v~iiGpNGaGKSTLlk~i~Gl~ 47 (245)
T PRK03695 15 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGLL 47 (245)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 748999599899999789941999999984668
No 249
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=94.60 E-value=0.093 Score=31.79 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 375266788999999998740789838
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKV 190 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~ 190 (438)
+++.|++|+|||+++..|++..+..++
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~ 27 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFI 27 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 987899999999999999999789853
No 250
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.60 E-value=0.027 Score=35.68 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 002235850375266788999999998740
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
=+.+-+|+..+|+|++|+|||||+.+|+..
T Consensus 21 sl~i~~Gei~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 889849979999999999999999998377
No 251
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.58 E-value=0.024 Score=36.08 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=28.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|+..+|+|.+|+|||||+..|+.-
T Consensus 25 ~Vsl~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl 56 (280)
T PRK13649 25 DVNLDILDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 02689879989999959998699999999669
No 252
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.57 E-value=0.023 Score=36.16 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=30.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCE
Q ss_conf 52002235850375266788999999998740---789838
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKV 190 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~ 190 (438)
|.=+.|-+|..++|+|.+|+|||||+.+|+.- ..+.+.
T Consensus 24 dIsl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~ 64 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64 (288)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 33679859989999999994799999999748888885699
No 253
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.57 E-value=0.052 Score=33.61 Aligned_cols=65 Identities=26% Similarity=0.214 Sum_probs=45.6
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 00223585037526678899999999874078983899312465223889999864277553289841577880344444
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMA 234 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a 234 (438)
-+.+-+|-++.|.|+||+|||+|+.+++.-..-+.-.+-.=||.- +.-.|+..|...
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~v-----------------------s~~~pea~Rq~V 79 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV-----------------------STLKPEAYRQQV 79 (223)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCC-----------------------CCCCHHHHHHHH
T ss_conf 366538854887678876688999999813699885288747334-----------------------434859999999
Q ss_pred HHHHHHHH
Q ss_conf 45677788
Q gi|254780684|r 235 PLTAVTIA 242 (438)
Q Consensus 235 ~~~a~~iA 242 (438)
.|++-+-|
T Consensus 80 sY~~Q~pa 87 (223)
T COG4619 80 SYCAQTPA 87 (223)
T ss_pred HHHHCCCC
T ss_conf 99972842
No 254
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.025 Score=35.93 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=28.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+-.||+|.||+|||||+.+|+.-.
T Consensus 23 ~Vsl~I~~Gei~giIG~SGaGKSTLlr~i~gL~ 55 (343)
T PRK11153 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 618899899899999999986999999996599
No 255
>KOG0057 consensus
Probab=94.52 E-value=0.049 Score=33.83 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=29.6
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 002235850375266788999999998740789
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
=++|.+|-|++|.|++|+||||++.++-+.-+-
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~ 404 (591)
T KOG0057 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY 404 (591)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 588648978989789998788999999997446
No 256
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.022 Score=36.41 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 87520022358503752667889999999987407
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.+|.=+.+-+|.-.+|||++|+|||||+.+|+-..
T Consensus 14 ~ldv~l~i~~g~i~~l~GpsGaGKTTLl~~iaGl~ 48 (352)
T PRK11144 14 CLTVNLTLPAQGITAIFGRSGAGKTSLINLISGLT 48 (352)
T ss_pred EEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999998899899999999962999999997689
No 257
>KOG2028 consensus
Probab=94.50 E-value=0.14 Score=30.61 Aligned_cols=75 Identities=23% Similarity=0.376 Sum_probs=45.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 0375266788999999998740789838---9931246522388999986427755328984157788034444445677
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKV---IISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAV 239 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~---V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~ 239 (438)
-|-+.|++|+|||+|+..|+..++.-.. -..+.--...++++.+++-+++.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~-------------------------- 217 (554)
T KOG2028 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEK-------------------------- 217 (554)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH--------------------------
T ss_conf 058866998765889999986057774279997414566188999999988787--------------------------
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 788886426798899970989999998766
Q gi|254780684|r 240 TIAEYFSSKGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~~Ds~tr~a~A~rei 269 (438)
-..++..+|++|-+-||-.+|..+
T Consensus 218 ------~l~krkTilFiDEiHRFNksQQD~ 241 (554)
T KOG2028 218 ------SLTKRKTILFIDEIHRFNKSQQDT 241 (554)
T ss_pred ------HHHCCEEEEEEHHHHHHHHHHHHC
T ss_conf ------652440698737765532321100
No 258
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=94.49 E-value=0.022 Score=36.37 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=33.6
Q ss_pred HHHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEE
Q ss_conf 458752-00223585037526678899999999874078--983899
Q gi|254780684|r 149 IRVIDI-FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVII 192 (438)
Q Consensus 149 Ir~ID~-l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~ 192 (438)
|+|+|. =+.+.+|..++|.|.||+|||||+.+|..... ...+.|
T Consensus 28 v~Av~~Vsl~i~~GE~lgiVGeSGsGKSTL~~~l~gl~~p~~G~I~~ 74 (327)
T PRK11308 28 VKALDGVSFNLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYY 74 (327)
T ss_pred EEEECCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 88850606798899999999998319999999995699988637998
No 259
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.49 E-value=0.03 Score=35.42 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=28.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+-.+|+|++|+|||||+.+|+..-
T Consensus 20 ~vsl~i~~Gei~~liGpNGaGKSTLlk~i~Gl~ 52 (257)
T PRK13548 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (257)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 337898699899999999987999999985675
No 260
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.47 E-value=0.03 Score=35.41 Aligned_cols=32 Identities=38% Similarity=0.450 Sum_probs=28.0
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 20022358503752667889999999987407
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.=+++-+|+-.+|.|++|+|||||+..|+..-
T Consensus 21 isl~i~~Gei~~liGpNGaGKSTLlk~i~Gl~ 52 (255)
T PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 08899899799999999981999999997598
No 261
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.47 E-value=0.035 Score=34.93 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=29.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 52002235850375266788999999998740789
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
|.=+.+-+|+.++|+|++|.|||||+.+|+.....
T Consensus 23 ~isl~i~~Gei~~liG~NGaGKSTLl~~i~G~~~~ 57 (237)
T PRK11614 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA 57 (237)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 12789869979999879997599999999679988
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.43 E-value=0.031 Score=35.31 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=72.2
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
Q ss_conf 20022358503752667889999999987407----89838993124652238899998642775532898415778803
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD----CFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPI 229 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~----~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~ 229 (438)
.=+.+-+|+..+|.|++|.|||||+.+|+-.. ....+.| -|+.-..... .+.. ..++ .+ ....|
T Consensus 19 vsl~v~~Gei~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~I~~--~g~~i~~~~~-~~~~-~~gi----~~--~~q~~-- 86 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF--KGEDITDLPP-EERA-RLGI----FL--AFQYP-- 86 (200)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEE--CCEECCCCCH-HHHH-HCCE----EE--ECCCH--
T ss_conf 0568879989999968999999999997077777852007999--9999886999-9999-7694----89--63676--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-HHH---------HHCCCCCCCCCCCHHHHHHCCHHHHHHHC
Q ss_conf 44444456777888864267988999709899999987-665---------40477843236632455420044444311
Q gi|254780684|r 230 LRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIR-EIA---------TNSGELPVARGYPTSVFSELPRLLERIGP 299 (438)
Q Consensus 230 ~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~r-eis---------~~~ge~P~~~gyp~~~~~~~~~l~ERag~ 299 (438)
..+.++.+++++|.-+.+ ++ --+-+| .++ +.+.||-+. --+.--..+.+++.+-
T Consensus 87 ----~~~~~~~~~~~l~~~~~~-------LS-GGekqrv~iaral~~~P~lllLDEPtsg--LD~~~~~~i~~~i~~l-- 150 (200)
T cd03217 87 ----PEIPGVKNADFLRYVNEG-------FS-GGEKKRNEILQLLLLEPDLAILDEPDSG--LDIDALRLVAEVINKL-- 150 (200)
T ss_pred ----HHCCCCCHHHHHHHHCCC-------CC-HHHHHHHHHHHHHHHCCCEEEEECCCCC--CCHHHHHHHHHHHHHH--
T ss_conf ----870798499999764636-------79-9999999999999609999999696226--9999999999999999--
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCHH-HHHHHHHCCCEEEEE
Q ss_conf 3678852355433342167642027-899986126089870
Q gi|254780684|r 300 SEKEKGNITAVISVLVDGDNHNDPI-ADSVRSILDGHIVLN 339 (438)
Q Consensus 300 ~~~~~GSiT~~~~v~~~~dd~~~pi-~~~~~~i~DG~i~L~ 339 (438)
... | .|.+.+ +...+....+ +|.+.-+-+|+|+-+
T Consensus 151 -~~~-g-~tiiii--tH~~~~~~~~~~Drv~vl~~Gkiv~~ 186 (200)
T cd03217 151 -REE-G-KSVLII--THYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred -HHC-C-CEEEEE--EECHHHHHHHCCCEEEEEECCEEEEE
T ss_conf -857-9-999999--96368776646999999879999999
No 263
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=94.43 E-value=0.03 Score=35.37 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+-.+|+|++|+|||||+.+|+....
T Consensus 21 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~Gl~~ 54 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2078983997999988999869999999967888
No 264
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=94.43 E-value=0.035 Score=34.89 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCCCHHH---HHHHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 43330001331100111---2458752-00223585037526678899999999874078
Q gi|254780684|r 131 KVPPAMNRQRVEKGFKT---GIRVIDI-FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 131 ~~p~p~~R~~i~e~L~T---GIr~ID~-l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.+|+.++=+-++--+.+ .++++|. =+.+.+|+.+||.|.+|+|||||+.+|..--.
T Consensus 8 ~~pplLeV~nL~v~f~~~~g~v~av~~Vsf~i~~GEilgivGeSGsGKSTl~~~i~gll~ 67 (330)
T PRK09473 8 TVPLLLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred CCCCEEEEECEEEEECCCCCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988479995659996489952898667476888998999986898779999999976888
No 265
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.42 E-value=0.029 Score=35.44 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=9.5
Q ss_pred EEECCCCCCCHHHHHHHHH
Q ss_conf 3421676420278999861
Q gi|254780684|r 313 VLVDGDNHNDPIADSVRSI 331 (438)
Q Consensus 313 v~~~~dd~~~pi~~~~~~i 331 (438)
|+.+|-|+++.-++..+..
T Consensus 522 i~idg~~~~~~~~~~~r~~ 540 (694)
T TIGR03375 522 VLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred EEECCEECCCCCHHHHHHH
T ss_conf 9989854254999999730
No 266
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.099 Score=31.60 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=31.7
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 87520022358503752667889999999987407898
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
.=|.-+++-.||+..|.|.||+|||||++.|.......
T Consensus 337 l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~ 374 (559)
T COG4988 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT 374 (559)
T ss_pred CCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 66710675489679998899997899999984757777
No 267
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.40 E-value=0.025 Score=35.93 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=8.7
Q ss_pred EECCCCCCCCCCEEEEE
Q ss_conf 98268888735189995
Q gi|254780684|r 36 VTCLSQYVCLGDFVVHQ 52 (438)
Q Consensus 36 v~Gl~~~v~iGelv~i~ 52 (438)
+.+++-.+.-||.+-+-
T Consensus 16 L~~vsl~i~~Gei~~Lv 32 (520)
T TIGR03269 16 LKNISFTIEEGEVLGIL 32 (520)
T ss_pred ECCEEEEECCCCEEEEE
T ss_conf 86717799999899999
No 268
>PRK10908 cell division protein FtsE; Provisional
Probab=94.39 E-value=0.028 Score=35.59 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 200223585037526678899999999874078
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.=+.+-+|..++|.|++|+|||||+.+|+.-..
T Consensus 21 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 53 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 387996998999999998079999999965999
No 269
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.37 E-value=0.03 Score=35.42 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=30.0
Q ss_pred HHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 45875-2002235850375266788999999998740
Q gi|254780684|r 149 IRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 149 Ir~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
++++| .=+++-+|...+|.|.+|+|||||+.+|+.-
T Consensus 24 ~~AL~~vsl~i~~Ge~~aIiG~nGsGKSTL~~~l~Gl 60 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 6586532889889989999999995799999999659
No 270
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.36 E-value=0.06 Score=33.20 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=33.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 520022358503752667889999999987407898389931246
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGE 197 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGe 197 (438)
|.=+.+-+|+-.+|.|++|.|||||+.+|+.....+---+-.-|+
T Consensus 18 ~vs~~v~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~~G~I~~~G~ 62 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62 (230)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCE
T ss_conf 717799999799999999940999999997799999549999999
No 271
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.35 E-value=0.031 Score=35.31 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=31.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEEC
Q ss_conf 5200223585037526678899999999874078--983899312
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISLV 195 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~alI 195 (438)
|.=+.+-+|++++|.|.+|+|||||+..|.+.-. ...+.+...
T Consensus 20 ~is~~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~ 64 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH 64 (237)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 508998799999999999985999999996776579878999999
No 272
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.033 Score=35.05 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+..+|.|++|+|||||+.+|+.-..
T Consensus 18 ~vs~~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~ 51 (213)
T cd03259 18 DLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6177988998999999999739999999975999
No 273
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.30 E-value=0.058 Score=33.29 Aligned_cols=39 Identities=31% Similarity=0.389 Sum_probs=29.9
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCEEE
Q ss_conf 2002235850375266788999999998740---78983899
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKVII 192 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~V~ 192 (438)
.-+.+-+|.=.+|.||||+|||||+..|.-. .+..+-|+
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~ 68 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68 (263)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 313550781899988988689999999856578988759984
No 274
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.29 E-value=0.24 Score=28.74 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 375266788999999998740
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+-|+|++|+|||.||+.|.+.
T Consensus 144 LfIyG~~GlGKTHLL~AIgn~ 164 (455)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVSA 164 (455)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 588789999789999999998
No 275
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.28 E-value=0.034 Score=34.95 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 52002235850375266788999999998740789
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
|.-+.+.+|+-.+|+|+.|.|||||+.+|+-....
T Consensus 18 ~vs~~v~~Gei~~llGpNGAGKSTll~~i~Gl~~p 52 (232)
T cd03218 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 60679899959999999996199999999779999
No 276
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.27 E-value=0.033 Score=35.03 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCEE
Q ss_conf 52002235850375266788999999998740---7898389
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKVI 191 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~V 191 (438)
|.=+.|-+|..++|+|.+|+|||||+.+|+.- +.+.+.+
T Consensus 20 ~vsl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I~v 61 (275)
T PRK13639 20 GINFKAEEGEMIAILGPNGAGKSTLFLHFNGILKPSSGSVLI 61 (275)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 648899899899999999964999999997398999639999
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.27 E-value=0.043 Score=34.22 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=29.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+.+..|+..+|.|..|+|||||+.+|+.....+
T Consensus 20 ~vsf~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~p~ 55 (206)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLLAGLLPPA 55 (206)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 507898699499998999998999999995887888
No 278
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.26 E-value=0.035 Score=34.88 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 2458752-00223585037526678899999999874078
Q gi|254780684|r 148 GIRVIDI-FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 148 GIr~ID~-l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|..++|. =+.+-+|+..+|.|++|.|||||+.+|+....
T Consensus 17 ~~~al~~vs~~v~~Gei~~liGpnGaGKSTL~~~i~Gl~~ 56 (255)
T PRK11300 17 GLLAVNNVNLEVREQEVVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9998804088989997999998999649999999967988
No 279
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.26 E-value=0.043 Score=34.23 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=29.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+..+|.|.+|+|||||+.+|+....
T Consensus 17 ~is~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~ 50 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 4377886997999998999889999999957989
No 280
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.25 E-value=0.038 Score=34.59 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=27.5
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 00223585037526678899999999874078
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
=+.+-+|+..+|.|+.|+|||||+.+|+..-.
T Consensus 20 s~~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 89987999999998999849999999848988
No 281
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=94.24 E-value=0.41 Score=27.12 Aligned_cols=89 Identities=22% Similarity=0.126 Sum_probs=58.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 5850375266788999999998740-789838993124652238899998642775532898415778803444444567
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
+|--+=|.|-||+|||||+..+.+. .+....++.+=| .++++. +...-+-+.-.|.......
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDG---D~~R~~--------------l~~dlgys~~~R~~n~~r~ 63 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDG---DNVRHG--------------LNKDLGFSEEDRTENIRRI 63 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC---HHHHCC--------------CCCCCCCCHHHHHHHHHHH
T ss_conf 98899988989999999999999999975997799768---877501--------------2577798989999999999
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 778888642679889997098999999
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDSITRFAHS 265 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A 265 (438)
..+|.++.+||..|++-+=|..+-.+.
T Consensus 64 ~~lak~l~~~g~~VIvs~isp~~~~R~ 90 (157)
T pfam01583 64 AEVAKLFADAGLIVITSFISPYRADRD 90 (157)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 999999842896588721578999999
No 282
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=94.24 E-value=0.035 Score=34.92 Aligned_cols=112 Identities=24% Similarity=0.298 Sum_probs=58.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHH-HHC-CCCCEEEEECC-------CCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 520022358503752667889999999987-407-89838993124-------652238899998642775532898415
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFA-RSD-CFDKVIISLVG-------ERGREVREFIEDYLGDNLKKSVVVVAT 223 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~-~~~-~~dv~V~alIG-------eR~rev~efi~~~~~~~l~~tvvv~~t 223 (438)
|.=+++--|+.+.+.|.||.||||||-+|= +|- ++..+-+=-.| -..|||-+.- ++|+=.|++
T Consensus 26 ~v~l~V~aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~G~i~~~H~G~~~DL~~a~pr~vl~vR--------r~tiGYVSQ 97 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVR--------RKTIGYVSQ 97 (224)
T ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCHHHHHHHH--------HHHCCCEEE
T ss_conf 743787367358853688876789999766304746867777624047675076845778773--------003351555
Q ss_pred CCCCHHHHHHHHH-HHHH-HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCC--CCCCC-CCCCHHHHH
Q ss_conf 7788034444445-6777-8888642679889997098999999876654047--78432-366324554
Q gi|254780684|r 224 SDESPILRKMAPL-TAVT-IAEYFSSKGDNVLLILDSITRFAHSIREIATNSG--ELPVA-RGYPTSVFS 288 (438)
Q Consensus 224 ~d~~~~~r~~a~~-~a~~-iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~g--e~P~~-~gyp~~~~~ 288 (438)
. +|. .|. .|.- +||=....|- ..+.|+.+...++. ++|=| =.|||+.||
T Consensus 98 F-----LRV-iPRvsalevV~ePL~~~G~----------~~~~A~~~A~~LL~rLniPERLW~LpPaTFS 151 (224)
T TIGR02324 98 F-----LRV-IPRVSALEVVAEPLLERGV----------PREAARARARELLARLNIPERLWSLPPATFS 151 (224)
T ss_pred E-----EEE-CCCCCHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHCCCCHHHCCCCCCCCC
T ss_conf 3-----031-2886728888787987289----------5899999999999755740244288788656
No 283
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.21 E-value=0.47 Score=26.67 Aligned_cols=159 Identities=20% Similarity=0.195 Sum_probs=91.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCC-------CCCEEEEEECCCCCHHH-
Q ss_conf 5850375266788999999998740-78983899312465223889999864277-------55328984157788034-
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDN-------LKKSVVVVATSDESPIL- 230 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~-------l~~tvvv~~t~d~~~~~- 230 (438)
-|+=+.|.|+.|+|||.|.++++-. -+....|.+..-|. .+++|+.....-+ +...-.++..--+|.-.
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~--T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL--TVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECH--HHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCC
T ss_conf 6769999888985488999999998870895489998403--59999998886388716877506268999324542257
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEE
Q ss_conf 44444567778888642679889997098999999876654047784323663245542004444431136788523554
Q gi|254780684|r 231 RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAV 310 (438)
Q Consensus 231 r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~ 310 (438)
+..+--.=--+.|+-+-..+||+ ++||+|-+|.--- +-..-.+++..-+.... |- |.+
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dVi-IIDSls~~~~~~~-------------------~~~vl~fm~~~r~l~d~-gK-vIi 162 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVI-IIDSLSAFATYDS-------------------EDAVLNFMTFLRKLSDL-GK-VII 162 (235)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEE-EEECCCHHHHCCC-------------------HHHHHHHHHHHHHHHHC-CC-EEE
T ss_conf 37789999999755775237789-9953437765264-------------------99999999999998728-97-899
Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf 3334216764202789998612608987042775
Q gi|254780684|r 311 ISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAE 344 (438)
Q Consensus 311 ~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~ 344 (438)
.++..+.+++-...-++++-|.++.|+.+-..
T Consensus 163 --lTvhp~~l~e~~~~rirs~~d~~l~L~~~~~G 194 (235)
T COG2874 163 --LTVHPSALDEDVLTRIRSACDVYLRLRLEELG 194 (235)
T ss_pred --EEECHHHCCHHHHHHHHHHHHEEEEEEHHHHC
T ss_conf --99473433789999998752025898702317
No 284
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=94.21 E-value=0.031 Score=35.23 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=30.3
Q ss_pred HHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 45875-2002235850375266788999999998740
Q gi|254780684|r 149 IRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 149 Ir~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
++++| .=+.+-+|+.+||.|.||+|||||+..|..-
T Consensus 20 v~Av~~Vsf~i~~GEilgivGeSGsGKSTl~~~ilgl 56 (327)
T PRK11022 20 FKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (327)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9998441879889999999999987899999999748
No 285
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.20 E-value=0.037 Score=34.69 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=30.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCEE
Q ss_conf 520022358503752667889999999987407---898389
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD---CFDKVI 191 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~---~~dv~V 191 (438)
|.=+.+-+|+-.+|+|++|.|||||+.+|+... .+.+.|
T Consensus 20 ~is~~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i 61 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 408898499599999899973999999996698788997799
No 286
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.028 Score=35.57 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.3
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 200223585037526678899999999874078
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.-+.+-+|+-.+|+|++|+|||||+.+|+....
T Consensus 26 isl~I~~Ge~~~iiGpNGaGKSTLlk~i~Gll~ 58 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 288985997999999988399999999974988
No 287
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.18 E-value=0.035 Score=34.85 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=29.6
Q ss_pred HHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 245875-2002235850375266788999999998740
Q gi|254780684|r 148 GIRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 148 GIr~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|..++| .=+.+-+|+..+|.|++|+|||||+.+|+.-
T Consensus 18 g~~aL~~isl~I~~Ge~~aiiG~NGaGKSTLl~~i~Gl 55 (285)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (285)
T ss_pred CCEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 98887613789879989999999998099999999659
No 288
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.16 E-value=0.067 Score=32.85 Aligned_cols=17 Identities=18% Similarity=0.022 Sum_probs=7.8
Q ss_pred EECCCCCCCCCCEEEEE
Q ss_conf 98268888735189995
Q gi|254780684|r 36 VTCLSQYVCLGDFVVHQ 52 (438)
Q Consensus 36 v~Gl~~~v~iGelv~i~ 52 (438)
+.+++-.+.-||++-+-
T Consensus 20 L~~vsl~i~~Ge~~~lv 36 (501)
T PRK11288 20 LDDISFDVRAGQVHALM 36 (501)
T ss_pred ECCEEEEECCCCEEEEE
T ss_conf 77658998898199998
No 289
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.038 Score=34.66 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.-+.+-+|+..+|.|++|+|||||+.+|+....
T Consensus 17 ~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~ 50 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 1178987997999987889998999999958847
No 290
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.15 E-value=0.27 Score=28.42 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 00111245875200223585037526678899999999874078-9838993124652238899998642
Q gi|254780684|r 143 KGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC-FDKVIISLVGERGREVREFIEDYLG 211 (438)
Q Consensus 143 e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~-~dv~V~alIGeR~rev~efi~~~~~ 211 (438)
....+-=|.+|-|.--...-=+.|-+++|-|||||+++.++... ..-+..-.++|.-++-..|.+.++.
T Consensus 19 ~~~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 19 DNYVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 0026538999998607784389986788775889999999864765543576457766788999999999
No 291
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=94.13 E-value=0.17 Score=29.93 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHCCCC--CCEE
Q ss_conf 011124587520-0223585037526678899999999874078--9838993124652238899998642775--5328
Q gi|254780684|r 144 GFKTGIRVIDIF-TPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISLVGERGREVREFIEDYLGDNL--KKSV 218 (438)
Q Consensus 144 ~L~TGIr~ID~l-~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~alIGeR~rev~efi~~~~~~~l--~~tv 218 (438)
|=.+-.++||.+ +++=-|-++.+.|+||-|||||+.++-|+=+ ...+-+-+|--|.-+-+||-+.+ ++ +.++
T Consensus 348 P~RPd~~aL~~~~L~v~PGEtvAlVGPSGAGKSTlf~LLLRFYDP~~G~ilLDGvd~r~~dP~~lR~~~---ALVpQdp~ 424 (576)
T TIGR02204 348 PARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDIRDLDPADLRARI---ALVPQDPA 424 (576)
T ss_pred CCCCCCHHHCCCCCEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCHHHHHHC---CCCCCCCC
T ss_conf 798880423257725627765887668876279999999860488876577466414016808788344---40258864
Q ss_pred EEEECCCCC--------HHHHHHHHHHHHHHHHHHH--HCCCCEE
Q ss_conf 984157788--------0344444456777888864--2679889
Q gi|254780684|r 219 VVVATSDES--------PILRKMAPLTAVTIAEYFS--SKGDNVL 253 (438)
Q Consensus 219 vv~~t~d~~--------~~~r~~a~~~a~~iAEyfr--~~G~~Vl 253 (438)
+|++.+-|+ .-+++.++..+---.|+-+ .+|+|-.
T Consensus 425 lFa~Sv~eNIRyGrpDAs~~~V~~AA~aA~A~EFI~~LP~GY~T~ 469 (576)
T TIGR02204 425 LFAASVLENIRYGRPDASDEEVEAAARAAHAHEFISALPEGYDTY 469 (576)
T ss_pred CCHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 102030442135996666689999998754101565188754676
No 292
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.12 E-value=0.041 Score=34.42 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=30.5
Q ss_pred HHHHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 2458752-0022358503752667889999999987407
Q gi|254780684|r 148 GIRVIDI-FTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 148 GIr~ID~-l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|++++|. =+++.+|+..+|.|+.|.|||||+.+|+--.
T Consensus 14 ~~~al~~vsl~v~~Gei~~liGpNGaGKSTLl~~i~Gl~ 52 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989874507898899899999899975999999996795
No 293
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.12 E-value=0.43 Score=26.93 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=53.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCE-------EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE-
Q ss_conf 8752002235850375266788999999998740789838-------99312465223889999864277553289841-
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKV-------IISLVGERGREVREFIEDYLGDNLKKSVVVVA- 222 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~-------V~alIGeR~rev~efi~~~~~~~l~~tvvv~~- 222 (438)
+-+.=+|.-|| ++++|++|||||.++..++.....-.. .=..+||--+.+++..+.. +.++-+|++.-
T Consensus 251 a~~~gl~~PkG--vLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~~~vGesE~~~r~~f~~A--~~~aP~ilfiDE 326 (491)
T CHL00195 251 AENYGLPTPRG--LLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFGGIVGESESRMRQMIQLA--ETISPCILWIDE 326 (491)
T ss_pred HHHCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHH--HHHCCEEEEEEH
T ss_conf 66459999987--99979999878999999986638946996679975600670499999999999--861985899746
Q ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf ----------57788034444445677788886426798899970
Q gi|254780684|r 223 ----------TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILD 257 (438)
Q Consensus 223 ----------t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~D 257 (438)
.+|.-...|..+-+. -++-++...|+++..
T Consensus 327 idk~~~~~~~~~d~g~s~rv~~~~L-----t~m~e~~~~VfViat 366 (491)
T CHL00195 327 IDKAFSGLDSKGDSGTSNRVLATFI-----TWLSEKKSPVFVVAT 366 (491)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHH-----HHHCCCCCCEEEEEE
T ss_conf 5454258888888723289999999-----986468997699995
No 294
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=94.11 E-value=0.28 Score=28.32 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=52.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEE-CC-CCCHHHHHHHHHHHH
Q ss_conf 375266788999999998740-78983899312465223889999864277-553289841-57-788034444445677
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVA-TS-DESPILRKMAPLTAV 239 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~-t~-d~~~~~r~~a~~~a~ 239 (438)
++++|=-|+||||-.+=+|++ .+....|+.+-|=--|-.+ +|++...+ .-.--||.. +. .||+..=|.|...
T Consensus 85 il~VGVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA--~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~-- 160 (284)
T TIGR00064 85 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAA--IEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQA-- 160 (284)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH--HHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH--
T ss_conf 99984408860102889999998749908998275247999--99999989883875540788988717899998999--
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 7888864267988999
Q gi|254780684|r 240 TIAEYFSSKGDNVLLI 255 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~ 255 (438)
|. .+|.||||+
T Consensus 161 --Ak---~~niDvvli 171 (284)
T TIGR00064 161 --AK---ARNIDVVLI 171 (284)
T ss_pred --HH---HCCCCEEEE
T ss_conf --98---749978997
No 295
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.10 E-value=0.051 Score=33.72 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=66.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---C-----EEEEECCCCCHH------HHHHHHHHH--------
Q ss_conf 520022358503752667889999999987407898---3-----899312465223------889999864--------
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD---K-----VIISLVGERGRE------VREFIEDYL-------- 210 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d---v-----~V~alIGeR~re------v~efi~~~~-------- 210 (438)
|.=+.+-+|.|++|.|+.|+|||||+.+|+.....+ + +-++-..+...+ +-+++.+..
T Consensus 340 ~~s~~i~~gdrIaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~ 419 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV 419 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEEEEEEEHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 72677658988999899987789999998521356772599579678999870031027667799999864654328999
Q ss_pred ----CC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH--HHHHHHHHCCCCCCCCCCC
Q ss_conf ----27-7553289841577880344444456777888864267988999709899999--9876654047784323663
Q gi|254780684|r 211 ----GD-NLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAH--SIREIATNSGELPVARGYP 283 (438)
Q Consensus 211 ----~~-~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~--A~reis~~~ge~P~~~gyp 283 (438)
+. ++...-+-.--..-|-++|.+..++.+... +-||| ++|-=|+|-. +...+.-++ ..|+
T Consensus 420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~------~pNvL-lLDEPTNhLDi~s~eaLe~aL------~~f~ 486 (530)
T COG0488 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ------PPNLL-LLDEPTNHLDIESLEALEEAL------LDFE 486 (530)
T ss_pred HHHHHHCCCCHHHHCCCHHHCCHHHHHHHHHHHHHCC------CCCEE-EECCCCCCCCHHHHHHHHHHH------HHCC
T ss_conf 9999984998679639522258779999999998566------99789-972898767988999999999------8589
Q ss_pred HHHH-HHC-CHHHHHHH
Q ss_conf 2455-420-04444431
Q gi|254780684|r 284 TSVF-SEL-PRLLERIG 298 (438)
Q Consensus 284 ~~~~-~~~-~~l~ERag 298 (438)
|.|. --| -.|+++.+
T Consensus 487 Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 487 GTVLLVSHDRYFLDRVA 503 (530)
T ss_pred CEEEEEECCHHHHHHHC
T ss_conf 86999948999998333
No 296
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=94.08 E-value=0.034 Score=34.95 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.6
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 20022358503752667889999999987407
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.=+.+-+|+..+|+|+.|+|||||+.+|+..-
T Consensus 21 Vsl~I~~GEi~gLIGPNGAGKSTLLk~I~Gll 52 (409)
T PRK09536 21 VDLSVREGHLVGVVGPNGAGKTTLLRAMNGLI 52 (409)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 08898899899999998727999999996688
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.06 E-value=0.074 Score=32.54 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=34.5
Q ss_pred HHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEE
Q ss_conf 4587520-0223585037526678899999999874078--98389931
Q gi|254780684|r 149 IRVIDIF-TPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISL 194 (438)
Q Consensus 149 Ir~ID~l-~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~al 194 (438)
++++|.. +.+-+|...||.|.||+|||||+.+|+.-.. +..++|.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g 352 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDG 352 (539)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 0123012457638878999889999989999999487788884499927
No 298
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.06 E-value=0.5 Score=26.46 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=46.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH----HCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 3585037526678899999999874----078983899312465223889999864277553289841577880344444
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFAR----SDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMA 234 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~----~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a 234 (438)
..+..+-|.|.+|+|||.....+.+ .+.....||.=| .+-+.....+..+... +. ....|-.-+-.
T Consensus 53 ~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc-~~~~t~~~i~~~i~~~-L~--------~~~~p~~G~s~ 122 (394)
T PRK00411 53 SRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINC-QIDRTRYAILSEIARS-LF--------GHPPPSSGLSF 122 (394)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCHHHHHHHHHHH-HC--------CCCCCCCCCCH
T ss_conf 99984799889999899999999999997468965999969-6689899999999999-56--------99898778789
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 4567778888642679889997098999
Q gi|254780684|r 235 PLTAVTIAEYFSSKGDNVLLILDSITRF 262 (438)
Q Consensus 235 ~~~a~~iAEyfr~~G~~Vll~~Ds~tr~ 262 (438)
-..--.+-+++...+..+++++|.+-.+
T Consensus 123 ~~~~~~l~~~l~~~~~~~ivvLDEiD~L 150 (394)
T PRK00411 123 DELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 9999999998616697589999655402
No 299
>KOG0735 consensus
Probab=94.05 E-value=0.22 Score=29.01 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=59.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC---EEEEEC----CCCCHHHHHHHHHHHCCC--CCCEEE
Q ss_conf 45875200223585037526678899999999874078983---899312----465223889999864277--553289
Q gi|254780684|r 149 IRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDK---VIISLV----GERGREVREFIEDYLGDN--LKKSVV 219 (438)
Q Consensus 149 Ir~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv---~V~alI----GeR~rev~efi~~~~~~~--l~~tvv 219 (438)
.-+=+.+.|+-+-+-+.|-|+.|+|||+|+..|.++...+- +.|+-| |++-.-...|++....++ ++-+++
T Consensus 419 e~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiI 498 (952)
T KOG0735 419 ENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSII 498 (952)
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 44323045433466189867998777699999998751565069999752210420489999999999999886378089
Q ss_pred EE-------E-CCCC----CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 84-------1-5778----8034444445677788886426798899970
Q gi|254780684|r 220 VV-------A-TSDE----SPILRKMAPLTAVTIAEYFSSKGDNVLLILD 257 (438)
Q Consensus 220 v~-------~-t~d~----~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~D 257 (438)
|. + .+++ ......++.+.---+-+|..+. +.+-++..
T Consensus 499 vLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~-~~ia~Iat 547 (952)
T KOG0735 499 VLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRN-RKIAVIAT 547 (952)
T ss_pred EECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEE
T ss_conf 97050354056844477302899999999999999987068-57999985
No 300
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.5 Score=26.44 Aligned_cols=99 Identities=19% Similarity=0.340 Sum_probs=57.7
Q ss_pred HHHHHCCCCE---EEEECCCCCCHHHHHHHHHHH---CCCCC-EEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCC
Q ss_conf 2002235850---375266788999999998740---78983-89931246522388999986427-7553289841577
Q gi|254780684|r 154 IFTPLCHGQR---IGVFAGSGIGKSTLLSMFARS---DCFDK-VIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSD 225 (438)
Q Consensus 154 ~l~pig~GQR---~gIfg~~GvGKt~Ll~~i~~~---~~~dv-~V~alIGeR~rev~efi~~~~~~-~l~~tvvv~~t~d 225 (438)
.|.|..+|-+ +-|.|.+|+|||+.+..+.+. ....+ ++|.=|=+- ++....+..+... +
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-~t~~~i~~~i~~~~~------------ 98 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-RTPYQVLSKILNKLG------------ 98 (366)
T ss_pred HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCHHHHHHHHHHHHC------------
T ss_conf 9999855899860799889998732899999999973315675799951307-878799999999826------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 8803444444567778888642679889997098999999
Q gi|254780684|r 226 ESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHS 265 (438)
Q Consensus 226 ~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A 265 (438)
+.|.........=..+-++|..+++.+++++|.+-.....
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK 138 (366)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 8997676326899999997774187599997647654154
No 301
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.04 E-value=0.045 Score=34.12 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=28.3
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 002235850375266788999999998740789
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
=+++-.|++..|.|+||.|||||+..|+-...-
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 876067857999778886578899998742477
No 302
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.01 E-value=0.41 Score=27.07 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=25.2
Q ss_pred HHHHHHH--HHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEE
Q ss_conf 9987665--4047784323663245542004444431136788523554
Q gi|254780684|r 264 HSIREIA--TNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAV 310 (438)
Q Consensus 264 ~A~reis--~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~ 310 (438)
+|.+.|| +..||.-+--|=-|+==+.+++.+-+ ......|+|+-.
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g--L~~P~~G~i~~~ 351 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAG--LLPPSSGSIIFD 351 (539)
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHC--CCCCCCCEEEEE
T ss_conf 12301245763887899988999998999999948--778888449992
No 303
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=93.98 E-value=0.039 Score=34.54 Aligned_cols=65 Identities=25% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCH
Q ss_conf 200223585037526678899999999874078983899312465223889999864277553289841577880
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESP 228 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~ 228 (438)
.-+.|-+|-=+.++|-|||||||||.+|+-..+=.. ++|--.|+++.+ .|=+|-|||-|-|=-|=
T Consensus 4 v~L~i~~GEFisliGHSGCGKSTLLNli~Gl~~P~~---G~v~L~G~~i~~-------PGPdRMVVFQNYsLlPW 68 (230)
T TIGR01184 4 VDLTIRQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITE-------PGPDRMVVFQNYSLLPW 68 (230)
T ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCC---CCEEECCEECCC-------CCCCEEEEEECCCCCCH
T ss_conf 502552673699851278617899999850057777---616762624178-------76960478506200322
No 304
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.041 Score=34.40 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|+-.+|.|++|.|||||+.+|+...
T Consensus 25 ~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g~~ 57 (192)
T cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 838899288399999999998899999983798
No 305
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.92 E-value=0.045 Score=34.08 Aligned_cols=32 Identities=41% Similarity=0.674 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+++-+|.|+||+|-.|.|||||+..|+.-
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 73588607989989878998589999999587
No 306
>PRK13409 putative ATPase RIL; Provisional
Probab=93.91 E-value=0.049 Score=33.82 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.6
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 23585037526678899999999874
Q gi|254780684|r 158 LCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 158 ig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
.-.||+.||+|..|.||||++.+++-
T Consensus 96 p~~G~v~GLiG~NGaGKST~lkILsG 121 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKSTAVKILSG 121 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 99987899889999989999999958
No 307
>PRK13544 consensus
Probab=93.90 E-value=0.083 Score=32.16 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=29.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
|.=+++-+|+..+|.|+.|+|||||+.+|+....-+
T Consensus 19 ~vs~~i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~p~ 54 (208)
T PRK13544 19 NLSFTAKQNSLTLVIGNNGSGKTSLLRLLAGLIPIT 54 (208)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 415898299499999999998999999995880689
No 308
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=93.90 E-value=0.045 Score=34.11 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 124587520022358503752667889999999987407
Q gi|254780684|r 147 TGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 147 TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.||+.+| +-|-+|-=..|+|.||+||||++.||+|--
T Consensus 7 ~gVn~~~--l~i~~GEi~vi~GlSGsGKsT~vrmlNRLI 43 (372)
T TIGR01186 7 KGVNDAD--LEIAKGEIFVIMGLSGSGKSTLVRMLNRLI 43 (372)
T ss_pred CCCEECE--EEEECCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 3200000--155254389997789985789999987225
No 309
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=93.88 E-value=0.055 Score=33.48 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=42.9
Q ss_pred HHHH--HHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC--CEEE-EECCCCCHHHHHHHHH
Q ss_conf 1245--87520-022358503752667889999999987407898--3899-3124652238899998
Q gi|254780684|r 147 TGIR--VIDIF-TPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD--KVII-SLVGERGREVREFIED 208 (438)
Q Consensus 147 TGIr--~ID~l-~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d--v~V~-alIGeR~rev~efi~~ 208 (438)
-|-+ +++.+ +++-=|.+..|.|.||.|||||++.+....+-+ .+.+ --=|..|++..+|-++
T Consensus 361 ~G~~~pa~~~~sf~~~pG~~vAl~G~SGaGKSTLL~lLLGf~~P~~G~i~v~~~Gg~~G~~L~~~~~~ 428 (570)
T TIGR02857 361 PGRDEPALRPVSFTVEPGERVALVGPSGAGKSTLLNLLLGFVEPTEGAIVVERDGGINGVPLAEADAD 428 (570)
T ss_pred CCCHHHCCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 88801037885416638704888627999788999999715764464688744888539764211310
No 310
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.87 E-value=0.036 Score=34.77 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.-+.+-+|..++|.|.+|+|||||+.+|+.--
T Consensus 25 ~vsl~I~~Ge~~~iiG~nGsGKSTLl~~l~Gll 57 (286)
T PRK13641 25 NISFELEDGSFVALIGHTGSGKSTLMQHFNALL 57 (286)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 106798699999999999839999999996598
No 311
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.87 E-value=0.084 Score=32.13 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=30.1
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 022358503752667889999999987407898389931246
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGE 197 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGe 197 (438)
+-+-+|+.++|.|+||.|||||++.++--..-+.-=+.+.|+
T Consensus 31 L~v~~Ge~vaivG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~ 72 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQ 72 (228)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 786278658887788875776999995677899854898475
No 312
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.85 E-value=0.044 Score=34.15 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=9.9
Q ss_pred EEECCCCCCCCCCEEEEEC
Q ss_conf 9982688887351899956
Q gi|254780684|r 35 TVTCLSQYVCLGDFVVHQG 53 (438)
Q Consensus 35 ~v~Gl~~~v~iGelv~i~~ 53 (438)
-+.+++-.+.-||.+-+-+
T Consensus 20 aL~~vsl~i~~Ge~~~lvG 38 (513)
T PRK13549 20 ALDNISLRVRAGEIVSLCG 38 (513)
T ss_pred EECCEEEEECCCCEEEEEC
T ss_conf 9756389988997999989
No 313
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.81 E-value=0.057 Score=33.33 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=31.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCEEE
Q ss_conf 520022358503752667889999999987407---8983899
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD---CFDKVII 192 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~---~~dv~V~ 192 (438)
|.=+.+-+|+-.|++|+.|.|||||+.+|+.-. ...+.|.
T Consensus 18 ~vs~~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i~ 60 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60 (210)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 4267887995999998999849999999960026689989999
No 314
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.75 E-value=0.049 Score=33.81 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCEEEE
Q ss_conf 45875-2002235850375266788999999998740---789838993
Q gi|254780684|r 149 IRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKVIIS 193 (438)
Q Consensus 149 Ir~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~V~a 193 (438)
..|+| .=+.+-+|+-.|++|+.|.|||||+.+|+.- +.+.+.|.+
T Consensus 34 ~~al~~vsf~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~I~v~G 82 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82 (236)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 8986680578848959999999983099999999649488715999999
No 315
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.73 E-value=0.046 Score=34.03 Aligned_cols=31 Identities=32% Similarity=0.425 Sum_probs=27.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5200223585037526678899999999874
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
|.=+.+-.|+-.+|.|++|.|||||+.+|+-
T Consensus 27 ~vs~~v~~Gei~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCEEEEECCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 8388990881999998999519999999857
No 316
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.71 E-value=0.055 Score=33.46 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=28.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.=+.+-+|.++||+|..|.|||||+.+|+.-
T Consensus 42 nVSFeV~kGE~vGIIG~NGAGKSTLLKiIaGI 73 (549)
T PRK13545 42 NISFEVPEGEIVGIVGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 72578648989999889999899999999689
No 317
>KOG0727 consensus
Probab=93.70 E-value=0.035 Score=34.87 Aligned_cols=67 Identities=18% Similarity=0.365 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 3311001112458752002235--85037526678899999999874078983899312465223889999864277
Q gi|254780684|r 139 QRVEKGFKTGIRVIDIFTPLCH--GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDN 213 (438)
Q Consensus 139 ~~i~e~L~TGIr~ID~l~pig~--GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~ 213 (438)
+.|+|-.+.-..--|..--||- -+-++++|++|+|||.|...+++++.+..+-++ ..||++..+++|
T Consensus 165 qeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvv--------gsefvqkylgeg 233 (408)
T KOG0727 165 QEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV--------GSEFVQKYLGEG 233 (408)
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEEC--------CHHHHHHHHCCC
T ss_conf 999988836530788999708899862277579997578999998612611144630--------189999985548
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.69 E-value=0.049 Score=33.85 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 75200223585037526678899999999874078
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
.|.=+++-+|+-.+|.|..|+|||||+.+|+..-.
T Consensus 17 ~disl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl~~ 51 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97777877997999999999819999999967988
No 319
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.68 E-value=0.05 Score=33.78 Aligned_cols=28 Identities=32% Similarity=0.220 Sum_probs=23.6
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 2002235850375266788999999998
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
.=+.+-+|+..+|.|++|+|||||+..+
T Consensus 14 vsl~i~~G~~~aIiG~sGsGKSTLl~~~ 41 (261)
T cd03271 14 IDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 5889889999999879998699999999
No 320
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.67 E-value=0.053 Score=33.57 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=27.1
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 0022358503752667889999999987407
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
=+.+-+|+-.+|+|+.|+|||||+.+|+.--
T Consensus 21 sl~i~~Gei~~liGpNGaGKSTLlk~l~Gl~ 51 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8798389799999999980999999996688
No 321
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=93.64 E-value=0.037 Score=34.72 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=18.2
Q ss_pred EECCCCCCHHHHHHHHHHHCCC
Q ss_conf 5266788999999998740789
Q gi|254780684|r 166 VFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 166 Ifg~~GvGKt~Ll~~i~~~~~~ 187 (438)
|.|+||+||||||-++|-...-
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~p 22 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP 22 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCCC
T ss_conf 9788887479999998345877
No 322
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.61 E-value=0.055 Score=33.47 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+-++|+|.+|.|||||+.+|+--..
T Consensus 18 ~vsl~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~ 51 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3389988998999998999739999999967987
No 323
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.05 Score=33.79 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=23.2
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 20022358503752667889999999987407
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.=+.+.+|..++|.|.+|+|||||+..|+.-.
T Consensus 343 vsf~i~~GE~l~lvG~sGsGKSTl~r~l~gl~ 374 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 40035899589997678766899999985664
No 324
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.61 Score=25.84 Aligned_cols=147 Identities=12% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCCCCEEEEECCCCCEEEEEEEECCCEE---EEEECCCCCCCCCCCEEEECCC-CEEECCHHHHHHHHHHHHHHC--CCC
Q ss_conf 8735189995699607999997419979---9998048557467888997288-555246668865430776304--788
Q gi|254780684|r 43 VCLGDFVVHQGKNSDNLGQVIRINLDIV---YICPVGIGEEISLGDLVFHWGR-FRISPSACWCGRVINALGKPI--DGD 116 (438)
Q Consensus 43 v~iGelv~i~~~~~~v~geVi~~~~~~~---~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~lLGRViD~lG~Pl--Dg~ 116 (438)
..+|+.+.+-.+++ -||.-+.+-- .++.+-+-..|.+|+.|-.-.+ ..+. ..|-+=.|++=..+ |..
T Consensus 73 l~vg~v~e~id~~~----~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv---~vLp~~~Dp~V~~M~v~e~ 145 (406)
T COG1222 73 LIVGTVLEVLDDGR----AIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIV---RVLPPEVDPRVSVMEVEEK 145 (406)
T ss_pred CEEEEEEEECCCCE----EEEEECCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEE---EECCCCCCCHHHEEEECCC
T ss_conf 56899999817861----8997079971887346876987869988899857761456---6178755762020011258
Q ss_pred CCCCCCCEEEEECCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 777555301211254333000--13311001112458752002235850--37526678899999999874078983899
Q gi|254780684|r 117 DSLGKGDLSMEIMSKVPPAMN--RQRVEKGFKTGIRVIDIFTPLCHGQR--IGVFAGSGIGKSTLLSMFARSDCFDKVII 192 (438)
Q Consensus 117 ~~l~~~~~~~~i~~~~p~p~~--R~~i~e~L~TGIr~ID~l~pig~GQR--~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~ 192 (438)
|.+... .+ +=++ -+-+.|..+.=++-=+.|-.+|--+- +++.|++|+|||-|+..+|.++++..+=+
T Consensus 146 PdvtY~----dI-----GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 146 PDVTYE----DI-----GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred CCCCHH----HC-----CCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 987865----33-----588999999999840336688899974999997127668999758899999872058669994
Q ss_pred EECCCCCHHHHHHHHHHHCCC
Q ss_conf 312465223889999864277
Q gi|254780684|r 193 SLVGERGREVREFIEDYLGDN 213 (438)
Q Consensus 193 alIGeR~rev~efi~~~~~~~ 213 (438)
+ ..||++.+.++|
T Consensus 217 v--------gSElVqKYiGEG 229 (406)
T COG1222 217 V--------GSELVQKYIGEG 229 (406)
T ss_pred C--------CHHHHHHHHCCC
T ss_conf 2--------199999983411
No 325
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.55 E-value=0.052 Score=33.63 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 520022358503752667889999999987
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFA 182 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~ 182 (438)
|.=+.+-+|.+++|.|.+|+|||||+..|+
T Consensus 278 ~vs~~v~~GE~~~i~G~nGsGKSTLl~~l~ 307 (490)
T PRK10938 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLIT 307 (490)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 357898389889998678887999999980
No 326
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.54 E-value=0.056 Score=33.41 Aligned_cols=30 Identities=37% Similarity=0.478 Sum_probs=26.9
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 002235850375266788999999998740
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
-+++-+||.++|+|..|.|||||+.||+--
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 789607967999826997475899998355
No 327
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.095 Score=31.74 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+-.+|.|+.|.|||||+.+|+....
T Consensus 18 ~vsl~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~ 51 (173)
T cd03230 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2087887993999987899799999999976857
No 328
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.53 E-value=0.041 Score=34.39 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|...+|+|.+|.|||||+.+|+..-.
T Consensus 18 ~vsl~v~~GEi~~liG~nGaGKSTll~~l~G~~~ 51 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCC
T ss_conf 3178985996999988899992637787669867
No 329
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.05 Score=33.75 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|.=+.+-+|.-.+|+|.+|+|||+++..+..--
T Consensus 21 ~Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll 53 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 607289899999999999878999999995799
No 330
>PRK09519 recA recombinase A; Reviewed
Probab=93.48 E-value=0.58 Score=25.97 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=6.2
Q ss_pred EEECHHHHHHHHHH
Q ss_conf 97098999999876
Q gi|254780684|r 255 ILDSITRFAHSIRE 268 (438)
Q Consensus 255 ~~Ds~tr~a~A~re 268 (438)
.+||.+-++.+.++
T Consensus 543 ~~~~~~~l~~~~~~ 556 (790)
T PRK09519 543 GMDNVTAFAESVPM 556 (790)
T ss_pred EECCCCCCCHHHHH
T ss_conf 52143334613420
No 331
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.45 E-value=0.11 Score=31.30 Aligned_cols=91 Identities=15% Similarity=0.266 Sum_probs=34.7
Q ss_pred CEEEEEECHHHHHHHHHHHHHH--CCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 8899970989999998766540--47784323663245542004444431136788523554333421676420278999
Q gi|254780684|r 251 NVLLILDSITRFAHSIREIATN--SGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSV 328 (438)
Q Consensus 251 ~Vll~~Ds~tr~a~A~reis~~--~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~ 328 (438)
.+.+-+.+++. .+.+.+++. .||+-+--|--|+=-+.+.+++ +|......|+| +..|.+++.--+...
T Consensus 255 ~~~l~~~~ls~--~~l~~vs~~v~~GEi~gi~G~nGsGKsTL~~~l--~Gl~~~~~G~v------~~~G~~i~~~~~~~~ 324 (501)
T PRK10762 255 EIRLKVDNLCG--PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVL--YGALPRTSGYV------TLDGHEVVTRSPQDG 324 (501)
T ss_pred CEEEEEEECCC--CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHH--HCCCCCCCCEE------EECCEECCCCCHHHH
T ss_conf 64899863146--765634447668818996678887688999998--18767777769------999998887798999
Q ss_pred HHHCCCEEEEEHHHHHCCCCCCCCC
Q ss_conf 8612608987042775897131144
Q gi|254780684|r 329 RSILDGHIVLNRSLAEEGRYPPVDP 353 (438)
Q Consensus 329 ~~i~DG~i~L~r~la~~g~~Paid~ 353 (438)
.. -|-.++..+-...+.+|...+
T Consensus 325 ~~--~~i~~v~~dr~~~~l~~~~sv 347 (501)
T PRK10762 325 LA--NGIVYISEDRKRDGLVLGMSV 347 (501)
T ss_pred HH--CCCCEECHHHHHCCCCCCCCH
T ss_conf 86--178445123331476678809
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=93.45 E-value=0.083 Score=32.15 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=81.2
Q ss_pred CCCCCEEEEECCCCCEEEEEEEECCCEEEEE-ECCC--CCCCCCC-CEEEECCCCEEE-CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 8735189995699607999997419979999-8048--5574678-889972885552-466688654307763047887
Q gi|254780684|r 43 VCLGDFVVHQGKNSDNLGQVIRINLDIVYIC-PVGI--GEEISLG-DLVFHWGRFRIS-PSACWCGRVINALGKPIDGDD 117 (438)
Q Consensus 43 v~iGelv~i~~~~~~v~geVi~~~~~~~~l~-~~~~--~~gI~~G-~~V~~~g~~~i~-vG~~lLGRViD~lG~PlDg~~ 117 (438)
+.+|+.|.++..+ .-.|.+..+.+-+..+. +-.. ..-|..+ |.|...-.+.-| +...++-|.+=..-.- . -.
T Consensus 35 ~~VGD~V~~~~~~-~~~g~I~~i~pR~n~l~R~~~~~~~q~iaANiD~v~IV~s~~~p~~~~~~idR~Lv~a~~~-~-i~ 111 (287)
T cd01854 35 PVVGDWVEVEPDD-DGEGVIVRVLPRKNLLSRPAAGGREQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-G-IE 111 (287)
T ss_pred CCCCEEEEEEECC-CCEEEEEEEECCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHC-C-CC
T ss_conf 6346599999747-9808999994783279823799843689972668999952689989989999999999977-9-96
Q ss_pred CCCCCCEEEEECCCCC---------CC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 7755530121125433---------30-0013311001112458752002235850375266788999999998740789
Q gi|254780684|r 118 SLGKGDLSMEIMSKVP---------PA-MNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 118 ~l~~~~~~~~i~~~~p---------~p-~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
|+..-. +..+...+- .+ +.--.++..-..| +|.|....+|+...+.|.||||||+|+..+.....
T Consensus 112 pvivln-K~DL~~~~~~~~~~~~~~~~gy~v~~~S~~~~~g---~~~L~~~l~~k~~v~~G~SGvGKSSLiN~L~~~~~- 186 (287)
T cd01854 112 PVIVLT-KADLLDDEEEELELVEALALGYPVLAVSAKTGEG---LDELREYLKGKTSVLVGQSGVGKSTLINALLPDLD- 186 (287)
T ss_pred EEEEEE-CHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC---HHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHH-
T ss_conf 899998-6221994899999999872998499996689858---89999874798899988998888999987462121-
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCC---CCEEEEEECC----CCCHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 838993124652238899998642775---5328984157----788034444445--67778888642
Q gi|254780684|r 188 DKVIISLVGERGREVREFIEDYLGDNL---KKSVVVVATS----DESPILRKMAPL--TAVTIAEYFSS 247 (438)
Q Consensus 188 dv~V~alIGeR~rev~efi~~~~~~~l---~~tvvv~~t~----d~~~~~r~~a~~--~a~~iAEyfr~ 247 (438)
.+..+.-+. .+.|. .++-++.-.. =|+|+.|-...+ ..-.++.+|.|
T Consensus 187 ------------~~t~~vs~~-~~rGrHTTt~~~L~~l~~gg~iiDTPG~r~~~l~~~~~~~l~~~F~e 242 (287)
T cd01854 187 ------------LATGEISEK-LGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYFPE 242 (287)
T ss_pred ------------HHHHHHHHH-HCCCCEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHCHH
T ss_conf ------------256666776-08985014157999928995898689876356777898999886878
No 333
>PRK05595 replicative DNA helicase; Provisional
Probab=93.44 E-value=0.15 Score=30.23 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 01112458752002-235850375266788999999998740
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
-+.||++.+|.++- +.+|+=+-|-|-+|+|||.|+-.|+.+
T Consensus 183 Gi~TGf~~LD~~t~Gl~~GdLiiiaaRP~mGKTa~alnia~~ 224 (444)
T PRK05595 183 GVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEY 224 (444)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 765884769987459985777999857989807999999999
No 334
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.44 E-value=0.64 Score=25.70 Aligned_cols=91 Identities=23% Similarity=0.178 Sum_probs=47.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC-CEEEEEC------CCCCHH------HHHHHHHHHCCCCCCEEEEEECCCCCHHH
Q ss_conf 3752667889999999987407898-3899312------465223------88999986427755328984157788034
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFD-KVIISLV------GERGRE------VREFIEDYLGDNLKKSVVVVATSDESPIL 230 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~d-v~V~alI------GeR~re------v~efi~~~~~~~l~~tvvv~~t~d~~~~~ 230 (438)
+-|.|+||+||++|+..+.+..... ..++... ||...+ ..+|-+......+-...-+.
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~r~~E~~G~dY~Fvs~~~F~~~i~~g~f~E~~~~~--------- 72 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH--------- 72 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCEEEEEEEEC---------
T ss_conf 99999998899999999985198776875660378998887789678986799999998669149999998---------
Q ss_pred HHHHHHHHHHHH--HHHHHCCCCEEEEEECHHHHHHHHHH
Q ss_conf 444445677788--88642679889997098999999876
Q gi|254780684|r 231 RKMAPLTAVTIA--EYFSSKGDNVLLILDSITRFAHSIRE 268 (438)
Q Consensus 231 r~~a~~~a~~iA--Eyfr~~G~~Vll~~Ds~tr~a~A~re 268 (438)
.-+.|+... +-..++|++|++-+|= .-+..+|+
T Consensus 73 ---g~~YGt~~~~I~~~~~~G~~vil~id~--~g~~~lk~ 107 (137)
T cd00071 73 ---GNYYGTSKAAVEEALAEGKIVILEIDV--QGARQVKK 107 (137)
T ss_pred ---CCCCCCCHHHHHHHHHCCCEEEEEEEH--HHHHHHHH
T ss_conf ---806627899999999639949999748--99999997
No 335
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=93.43 E-value=0.075 Score=32.47 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=36.4
Q ss_pred CCCHHHHHHHH-HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCEEE
Q ss_conf 10011124587-520022358503752667889999999987407---8983899
Q gi|254780684|r 142 EKGFKTGIRVI-DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD---CFDKVII 192 (438)
Q Consensus 142 ~e~L~TGIr~I-D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~---~~dv~V~ 192 (438)
+-...+|+.++ |.=+.|-+||=.=+.|.||.||||||.+|.... .+.|.|.
T Consensus 8 ~~~Y~~~~~aL~~v~l~i~kG~F~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~ 62 (215)
T TIGR02673 8 SKSYPGGVEALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRVA 62 (215)
T ss_pred CEECCCCCHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 1007898511327644752774078872778617899999985269875808888
No 336
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.43 E-value=0.067 Score=32.84 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.-+.|..|+-+-+.|+||||||||++.++-.
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CCCEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 35502358978999768886578899998627
No 337
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.43 E-value=0.062 Score=33.06 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+-.+|.|++|.|||||+.+|+....
T Consensus 18 ~vsl~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~ 51 (163)
T cd03216 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5488987998999998899899999999957768
No 338
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.41 E-value=0.065 Score=32.92 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=51.5
Q ss_pred HHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHCC-CCCEEEE-ECCCCCHHHHHHHHHHHC--CCCCCEEEEEEC
Q ss_conf 4587520-0223585037526678899999999874078-9838993-124652238899998642--775532898415
Q gi|254780684|r 149 IRVIDIF-TPLCHGQRIGVFAGSGIGKSTLLSMFARSDC-FDKVIIS-LVGERGREVREFIEDYLG--DNLKKSVVVVAT 223 (438)
Q Consensus 149 Ir~ID~l-~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~-~dv~V~a-lIGeR~rev~efi~~~~~--~~l~~tvvv~~t 223 (438)
++++|.. +.+.+|+.+||.|.||+|||++...|.+--. ....+.. -|==+|++...+-++.+. -|-+=+.++-+.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCC
T ss_conf 77771405887589689998389788999999998466888974861189988964666999999863175689997481
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77-88034444445677788886426
Q gi|254780684|r 224 SD-ESPILRKMAPLTAVTIAEYFSSK 248 (438)
Q Consensus 224 ~d-~~~~~r~~a~~~a~~iAEyfr~~ 248 (438)
++ -.|..+ .+..++|.++..
T Consensus 98 ~~sLnPv~~-----Ig~Qi~E~l~~h 118 (316)
T COG0444 98 MTSLNPVMT-----IGDQIAEVLRLH 118 (316)
T ss_pred HHHCCCHHH-----HHHHHHHHHHHH
T ss_conf 564497034-----999999999985
No 339
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.40 E-value=0.066 Score=32.90 Aligned_cols=31 Identities=39% Similarity=0.552 Sum_probs=26.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5200223585037526678899999999874
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
|.-+-|-.|+.+.++|+||.||||||..||-
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 6315506886899977898767889999857
No 340
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=93.39 E-value=0.058 Score=33.28 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=6.1
Q ss_pred HHHCCCCEEEEE
Q ss_conf 642679889997
Q gi|254780684|r 245 FSSKGDNVLLIL 256 (438)
Q Consensus 245 fr~~G~~Vll~~ 256 (438)
|...|.|.+.++
T Consensus 304 ~~~lg~n~i~V~ 315 (648)
T PRK10535 304 IRAIGTNTIDIY 315 (648)
T ss_pred HHHCCCCEEEEE
T ss_conf 986088779998
No 341
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=93.37 E-value=0.056 Score=33.38 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=25.3
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 0022358503752667889999999987
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFA 182 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i~ 182 (438)
=++|..|-.+|+.|-||+|||||.-.|.
T Consensus 32 sL~l~~Ge~~gLLG~SG~GKSTLArlLl 59 (267)
T TIGR02769 32 SLSLEEGETVGLLGRSGCGKSTLARLLL 59 (267)
T ss_pred CEEECCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 3231377505523678873778999987
No 342
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=93.36 E-value=0.11 Score=31.20 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=34.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 585037526678899999999874078983899312465223889999864277
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDN 213 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~ 213 (438)
|| ++++|++|+|||-|+..+|..+++..+=++ ..||++.+.|+|
T Consensus 157 KG--vLLyGPPGtGKTLlAKAvA~et~ATFIrvV--------gSElV~KyIGEG 200 (364)
T TIGR01242 157 KG--VLLYGPPGTGKTLLAKAVAHETNATFIRVV--------GSELVRKYIGEG 200 (364)
T ss_pred CC--EEEECCCCCCHHHHHHHHHCCCCCEEEEEE--------HHHHHHHHHCCH
T ss_conf 86--570075797688999986314551268860--------444444441331
No 343
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.062 Score=33.08 Aligned_cols=183 Identities=17% Similarity=0.254 Sum_probs=79.2
Q ss_pred HCCCCEEEEECCCCCCH-----HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE-CCCCCHHHH
Q ss_conf 23585037526678899-----999999874078983899312465223889999864277553289841-577880344
Q gi|254780684|r 158 LCHGQRIGVFAGSGIGK-----STLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVA-TSDESPILR 231 (438)
Q Consensus 158 ig~GQR~gIfg~~GvGK-----t~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~-t~d~~~~~r 231 (438)
+...-++.|+-.+-.+- ..|+..|.+..+.... +..|-.+-.|+.++-+... -|++--+|.. +..+.....
T Consensus 149 l~~~p~ililDEPt~~LD~~~~~~l~~~l~~l~~~g~t-il~itH~l~~v~~~~Drv~--vm~~G~iv~~~~~~~~~~~~ 225 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCG-IVYISHKMEEIFQLCDEIT--ILRDGQWIATEPLAGLTMDQ 225 (491)
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEECCCHHHHHHCCCEEE--ECCCCEEEEECCHHHCCHHH
T ss_conf 85399889815873455878889998888887742853-6786243674421586789--75697498546611189999
Q ss_pred HHHHHHHHHHHHHHHH---CCCCEEEEEECHHHHH-HHHHHHHHH--CCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCC
Q ss_conf 4444567778888642---6798899970989999-998766540--477843236632455420044444311367885
Q gi|254780684|r 232 KMAPLTAVTIAEYFSS---KGDNVLLILDSITRFA-HSIREIATN--SGELPVARGYPTSVFSELPRLLERIGPSEKEKG 305 (438)
Q Consensus 232 ~~a~~~a~~iAEyfr~---~G~~Vll~~Ds~tr~a-~A~reis~~--~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~G 305 (438)
......+-...+.|.+ ...++++-+.++|..- .+.+.+++. .||.-+--|--|+=-+.+.+++ +|-.....|
T Consensus 226 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~vsf~v~~GEivgl~G~nGsGKsTL~~~l--~Gl~~~~~G 303 (491)
T PRK10982 226 IIAMMVGRSLTQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETL--FGIREKSAG 303 (491)
T ss_pred HHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHH--HCCCCCCCC
T ss_conf 997650622243178645798761799952323788742026799968968997789999788999998--198678777
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCC
Q ss_conf 235543334216764202789998612608987042775897131144
Q gi|254780684|r 306 NITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDP 353 (438)
Q Consensus 306 SiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~ 353 (438)
+|+ ..|.+++..-+...+ -.|--+...+-...+.|+-.++
T Consensus 304 ~I~------~~G~~~~~~~~~~~~--~~~~~~v~~~r~~~~~~~~~~~ 343 (491)
T PRK10982 304 TIT------LHGKKINNHNANEAI--NHGFALVTEERRSTGIYAYLDI 343 (491)
T ss_pred EEE------ECCEECCCCCHHHHH--HCCCEEEEHHHHHCCCCCCCCH
T ss_conf 799------999999878989998--6265252033320440035758
No 344
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.34 E-value=0.083 Score=32.16 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=29.6
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 2002235850375266788999999998740789
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
.=+++-+|++++|.|.+|+|||||+.-+.+.-+.
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 2277548987888558888578999999861588
No 345
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=93.33 E-value=0.085 Score=32.08 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 87520022358503752667889999999987407
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.+|.|...-+|+..-+.|.||||||+|+..+....
T Consensus 25 g~~~L~~~l~~k~sv~~G~SGVGKSTLiN~L~~~~ 59 (161)
T pfam03193 25 GIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPEL 59 (161)
T ss_pred CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 99999998679859998899988999998856344
No 346
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=93.32 E-value=0.067 Score=32.82 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHH-HHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC-------EEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 00111245875200-223585037526678899999999874078983-------8993124652238899998642775
Q gi|254780684|r 143 KGFKTGIRVIDIFT-PLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDK-------VIISLVGERGREVREFIEDYLGDNL 214 (438)
Q Consensus 143 e~L~TGIr~ID~l~-pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv-------~V~alIGeR~rev~efi~~~~~~~l 214 (438)
|.+=.=.+.++-|+ ==++=+-.+|++++++||||||--|+|.-...+ +=++.|-||+ |++-.++-.-+..+
T Consensus 104 E~~G~A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERS-EIAgC~~GvPQ~~v 182 (282)
T TIGR02858 104 EVLGAADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERS-EIAGCVNGVPQLDV 182 (282)
T ss_pred ECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH-HHHHHCCCCCCCCC
T ss_conf 00577566688773058944678888688988510488898886078542468997469984324-65654588241446
Q ss_pred -CCEEEE
Q ss_conf -532898
Q gi|254780684|r 215 -KKSVVV 220 (438)
Q Consensus 215 -~~tvvv 220 (438)
-||=|.
T Consensus 183 G~RtDVL 189 (282)
T TIGR02858 183 GIRTDVL 189 (282)
T ss_pred CCCEEEC
T ss_conf 7606751
No 347
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=93.29 E-value=0.099 Score=31.59 Aligned_cols=43 Identities=33% Similarity=0.339 Sum_probs=31.4
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 2002235850375266788999999998740789838993124
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVG 196 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIG 196 (438)
.-+.+-.|+=++++|+||+||||||-.||--.+-|.--+.+-|
T Consensus 19 v~l~v~~G~lvaLLGPSGSGKsTLLR~iAGLe~pd~G~I~~~G 61 (241)
T TIGR00968 19 VDLEVPTGSLVALLGPSGSGKSTLLRVIAGLEQPDSGRIILNG 61 (241)
T ss_pred EEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 5557438527985468987378999998357999842699852
No 348
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.25 E-value=0.067 Score=32.84 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=31.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCEEE
Q ss_conf 520022358503752667889999999987407---8983899
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD---CFDKVII 192 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~---~~dv~V~ 192 (438)
|.-+.+-+|+-.+++|+.|.|||||+.+|+... .+.+.|.
T Consensus 18 ~is~~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~i~i~ 60 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60 (220)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 8267988983999999998719999999976978896289999
No 349
>PRK06217 hypothetical protein; Validated
Probab=93.21 E-value=0.11 Score=31.38 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=68.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCC----EEEEECCCC----CHHHHHHHHHHHCCCC-CCEEEEEECCCCCHHHHH
Q ss_conf 5037526678899999999874078983----899312465----2238899998642775-532898415778803444
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCFDK----VIISLVGER----GREVREFIEDYLGDNL-KKSVVVVATSDESPILRK 232 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~dv----~V~alIGeR----~rev~efi~~~~~~~l-~~tvvv~~t~d~~~~~r~ 232 (438)
+|+.|||.+|+|||||...+++..+--+ -.|=.=|.. .|.-.|=...++.+-. ...-|+..+. .+-..
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~~~W~p~~~pf~~kR~~~eR~~ll~~~~~~~~~WV~sGs~-~~wgd-- 78 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDDFFWLPTDPPFTTKREPEERLRLLLEDLRDSEGWILSGSL-LGWGD-- 78 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC-CCCCC--
T ss_conf 679997899887899999999975989686455535689997564379999999999986379998995775-23232--
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEE--CHHHHHH-HHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCC---CCC
Q ss_conf 4445677788886426798899970--9899999-987665404778432366324554200444443113678---852
Q gi|254780684|r 233 MAPLTAVTIAEYFSSKGDNVLLILD--SITRFAH-SIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKE---KGN 306 (438)
Q Consensus 233 ~a~~~a~~iAEyfr~~G~~Vll~~D--s~tr~a~-A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~---~GS 306 (438)
.+ ..--|.++++| --.|.++ -+||..---.++ .-| |+++-.+-.|+|=|..-.+. +.|
T Consensus 79 -----------~l-~p~~DlvVfL~lP~~irl~Rlr~RE~~RyG~ri--~pg--Gdm~~~~~~Fl~Wa~~YD~~~~~gRs 142 (185)
T PRK06217 79 -----------PL-EPLFDLVVFLYIPPELRLERLRLREEQRYGNRI--LPG--GDMHKASLEFLEWAAQYDNAGPEGRS 142 (185)
T ss_pred -----------CC-CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCC--CCC--CCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf -----------11-343568999828989999999999998607866--899--41888889999999867889877644
Q ss_pred E---------EEEEEEEECCCCCCCHHHHHHHHHC
Q ss_conf 3---------5543334216764202789998612
Q gi|254780684|r 307 I---------TAVISVLVDGDNHNDPIADSVRSIL 332 (438)
Q Consensus 307 i---------T~~~~v~~~~dd~~~pi~~~~~~i~ 332 (438)
+ -..|++.++|+- |+.+++-.++
T Consensus 143 l~~He~Wl~~~~cPVlrldg~~---~~~~~~~~vl 174 (185)
T PRK06217 143 LAAHEQWLADQSCPVLRLDGDL---TVEERLAQVL 174 (185)
T ss_pred HHHHHHHHHHCCCCEEEECCCC---CHHHHHHHHH
T ss_conf 9999999952898679976989---8999999999
No 350
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=93.19 E-value=0.056 Score=33.40 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=26.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5200223585037526678899999999874
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
|.-+-|-.|+=+||.|+||+|||||-.-|=|
T Consensus 483 nl~L~I~~Ge~IGIvGpSGSGKSTLTKL~QR 513 (703)
T TIGR01846 483 NLSLDIKPGEVIGIVGPSGSGKSTLTKLLQR 513 (703)
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 2687657865799872789867899999886
No 351
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.19 E-value=0.13 Score=30.67 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=33.8
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 200223585037526678899999999874078983899312465
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGER 198 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR 198 (438)
.=+.+-+|+-.|+.|+.|.|||||+.+|+.....+.--+-..|+.
T Consensus 24 vs~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~p~~G~i~i~G~~ 68 (293)
T COG1131 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD 68 (293)
T ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 499982895999989999989999999967977886499995862
No 352
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=93.17 E-value=0.13 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=28.5
Q ss_pred HHHHH-HHCCCCEEEEECCCCCCHHHHHHHHH---HHCCCCCEEEE
Q ss_conf 75200-22358503752667889999999987---40789838993
Q gi|254780684|r 152 IDIFT-PLCHGQRIGVFAGSGIGKSTLLSMFA---RSDCFDKVIIS 193 (438)
Q Consensus 152 ID~l~-pig~GQR~gIfg~~GvGKt~Ll~~i~---~~~~~dv~V~a 193 (438)
++-++ -+|+-|++||-|-+|+|||||+..+. +.-..-|-|+|
T Consensus 28 l~~i~p~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViA 73 (333)
T TIGR00750 28 LERILPKTGNAHVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIA 73 (333)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9986243279078766468888577799999899976597689998
No 353
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=93.15 E-value=0.075 Score=32.47 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=29.4
Q ss_pred HHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 58752-00223585037526678899999999874078
Q gi|254780684|r 150 RVIDI-FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 150 r~ID~-l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
++++. -+.+-.||+..|.|.||+||||+.+.|-|.=+
T Consensus 399 ~VL~~~sl~i~~G~t~AlVG~SGsGKSTii~LL~RfYd 436 (1467)
T PTZ00265 399 EIYKDLNFTLKEGKTYAFVGESGCGKSTILKLIERLYD 436 (1467)
T ss_pred EECCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 30068338863897799866888756679999963268
No 354
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.08 E-value=0.61 Score=25.84 Aligned_cols=83 Identities=20% Similarity=0.090 Sum_probs=53.4
Q ss_pred EEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 75266788999999998740-78983899312465223889999864277553289841577880344444456777888
Q gi|254780684|r 165 GVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAE 243 (438)
Q Consensus 165 gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAE 243 (438)
=+.|-||+|||||+..+.+. .+....++.+=| .++++.+.. .-+-+.-.|.........+|.
T Consensus 3 W~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDG---D~iR~~l~~--------------~lgys~~~R~~n~~r~~~lak 65 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG---DNVRHGLNK--------------DLGFSREDREENIRRIAEVAK 65 (149)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC---HHHHHHHCC--------------CCCCCHHHHHHHHHHHHHHHH
T ss_conf 987999999999999999999986997599774---889977365--------------559887889999999999999
Q ss_pred HHHHCCCCEEEEEECHHHHHH
Q ss_conf 864267988999709899999
Q gi|254780684|r 244 YFSSKGDNVLLILDSITRFAH 264 (438)
Q Consensus 244 yfr~~G~~Vll~~Ds~tr~a~ 264 (438)
++.+||..|++=.=+..+-.+
T Consensus 66 ~l~~qg~~VIvs~isp~~~~R 86 (149)
T cd02027 66 LLADAGLIVIAAFISPYREDR 86 (149)
T ss_pred HHHHCCCEEEEECCCCCHHHH
T ss_conf 998379827884167889999
No 355
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.08 E-value=0.074 Score=32.53 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=31.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCEEE
Q ss_conf 520022358503752667889999999987407---8983899
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD---CFDKVII 192 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~---~~dv~V~ 192 (438)
|.=+.+.+|+-.|+.|+.|.||||++.+|+-.. .+.+.|.
T Consensus 25 ~vs~~v~~Gei~gllGpNGAGKSTli~~l~Gl~~p~sG~i~i~ 67 (306)
T PRK13536 25 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVL 67 (306)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 6177885996999999989809999999967957898779999
No 356
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.03 E-value=0.73 Score=25.28 Aligned_cols=88 Identities=25% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC-CCCHH----------HHHHHHHHHCCC-CCCEEEEEECCCCC
Q ss_conf 5850375266788999999998740789838993124-65223----------889999864277-55328984157788
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVG-ERGRE----------VREFIEDYLGDN-LKKSVVVVATSDES 227 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIG-eR~re----------v~efi~~~~~~~-l~~tvvv~~t~d~~ 227 (438)
+|.=+-|+|+||+|||||..++-...+-..+|=+--= -|..| ..||.+-...+. +++..++-+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn----- 77 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN----- 77 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCC-----
T ss_conf 863999989988888999999986349379998526799998757802475779999998756874788777197-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0344444456777888864267988999709
Q gi|254780684|r 228 PILRKMAPLTAVTIAEYFSSKGDNVLLILDS 258 (438)
Q Consensus 228 ~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds 258 (438)
.|-++. .-.|--.++|+||+|-+|=
T Consensus 78 ---yYGT~~---~~ve~~~~~G~~vildId~ 102 (191)
T COG0194 78 ---YYGTSR---EPVEQALAEGKDVILDIDV 102 (191)
T ss_pred ---CCCCCH---HHHHHHHHCCCEEEEEEEH
T ss_conf ---324868---8999998669908999853
No 357
>COG1162 Predicted GTPases [General function prediction only]
Probab=93.01 E-value=0.083 Score=32.15 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.5
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 875200223585037526678899999999874
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
.++.+.+..+|...-+.|.||||||+|+..|.-
T Consensus 154 ~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 154 GLEELAELLAGKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 589999975588499988887769998874172
No 358
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.00 E-value=0.089 Score=31.94 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=28.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.-+.|-+++=..++|+||+||||++..++|-.+
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred CCCEECCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5722145780699888988678889999875411
No 359
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.14 Score=30.40 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCEEE
Q ss_conf 52002235850375266788999999998740---78983899
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKVII 192 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~V~ 192 (438)
|.=+.+-+|+-.|++|+.|.||||++.+|+-. +.+.+.|+
T Consensus 23 ~vs~~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~v~i~ 65 (304)
T PRK13537 23 GLSFHVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAGTISLC 65 (304)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 7177886995999999989729999999977956897689999
No 360
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.97 E-value=0.076 Score=32.43 Aligned_cols=31 Identities=32% Similarity=0.525 Sum_probs=27.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5200223585037526678899999999874
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
|.-+.+.+|++.+|+|.+|+|||||+.+++-
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 5338987898999988999889999999537
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=92.96 E-value=0.1 Score=31.52 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 666886543077630
Q gi|254780684|r 98 SACWCGRVINALGKP 112 (438)
Q Consensus 98 G~~lLGRViD~lG~P 112 (438)
|..-+=+++-|.=.|
T Consensus 111 GKST~lkILsG~l~P 125 (590)
T PRK13409 111 GKSTAVKILSGELIP 125 (590)
T ss_pred CHHHHHHHHHCCCCC
T ss_conf 899999999587148
No 362
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=92.93 E-value=0.22 Score=29.13 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=34.9
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 75200223585037526678899999999874078983899312465
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGER 198 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR 198 (438)
+-.+.+=.+|.=+++.|++|||||+|...||+.-.--.+-+.+=|.|
T Consensus 340 v~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~ 386 (784)
T PRK10787 340 VQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVR 386 (784)
T ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99862467787799646998772469999999858986998068878
No 363
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.88 E-value=0.081 Score=32.22 Aligned_cols=30 Identities=27% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 200223585037526678899999999874
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
.=+.+-+|+..+|.|.+|+|||||+..+..
T Consensus 14 isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~ 43 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 487888998999999999989999998887
No 364
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=92.87 E-value=0.077 Score=32.37 Aligned_cols=184 Identities=15% Similarity=0.205 Sum_probs=84.4
Q ss_pred HHCCCCEEEEECCCCCCH-----HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH--HCCCCCCEEEEE-ECCCCCH
Q ss_conf 223585037526678899-----99999987407898389931246522388999986--427755328984-1577880
Q gi|254780684|r 157 PLCHGQRIGVFAGSGIGK-----STLLSMFARSDCFDKVIISLVGERGREVREFIEDY--LGDNLKKSVVVV-ATSDESP 228 (438)
Q Consensus 157 pig~GQR~gIfg~~GvGK-----t~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~--~~~~l~~tvvv~-~t~d~~~ 228 (438)
-+..+-++.|+-.+-++- ..|...+.+..+..+ -+.+|-.+-.|+.++.+.. +.+| -+|. .+.++-.
T Consensus 159 al~~~p~llilDEPTa~Ld~~~~~~l~~~l~~l~~~g~-tii~isH~l~~v~~~~Drv~vl~~G----~iv~~~~~~e~~ 233 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISHKLAEIRRICDRYTVMKDG----SSVCSGMVSDVS 233 (510)
T ss_pred HHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHCCEEEECCCC----CEEEEECHHHCC
T ss_conf 99859884998788566686789999999888887287-1799952367788648869971498----199671546489
Q ss_pred HHHHHHHHHHHHHHHHHH-------HCCCCEEEEEECHHHH-HHHHHHHHHH--CCCCCCCCCCCHHHHHHCCHHHHHHH
Q ss_conf 344444456777888864-------2679889997098999-9998766540--47784323663245542004444431
Q gi|254780684|r 229 ILRKMAPLTAVTIAEYFS-------SKGDNVLLILDSITRF-AHSIREIATN--SGELPVARGYPTSVFSELPRLLERIG 298 (438)
Q Consensus 229 ~~r~~a~~~a~~iAEyfr-------~~G~~Vll~~Ds~tr~-a~A~reis~~--~ge~P~~~gyp~~~~~~~~~l~ERag 298 (438)
...+.....+-.+...+. +....+++-+.+++.. ..+.+.||+. .||+-+--|--|+=-+.+.+++ +|
T Consensus 234 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~l~~vsf~v~~GEi~gl~G~nGsGKsTL~~~l--~G 311 (510)
T PRK09700 234 NDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCL--FG 311 (510)
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHH--HC
T ss_conf 9999998737361231455666677777871799946525788865433578748818999768886288999998--19
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCC
Q ss_conf 136788523554333421676420278999861260898704277589713114456
Q gi|254780684|r 299 PSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLA 355 (438)
Q Consensus 299 ~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~ 355 (438)
-.....|+| +..|.|++.--+...+.. |.-++.......|.||...+..
T Consensus 312 l~~~~~G~I------~~~G~~i~~~~~~~~~~~--gi~~v~~~r~~~~l~~~~sv~e 360 (510)
T PRK09700 312 VDKRAGGEI------RLNGKDISPRSPLDAVKK--GMAYITESRRDNGFFPNFSIAQ 360 (510)
T ss_pred CCCCCCEEE------EECCEECCCCCHHHHHHC--CCEEEEEEHHHCCCCCCCCHHH
T ss_conf 888886189------999999998998999970--8677531033247488996899
No 365
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.84 E-value=0.18 Score=29.77 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCCEEEE
Q ss_conf 5200223585037526678899999999874078---9838993
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC---FDKVIIS 193 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~---~dv~V~a 193 (438)
|.-+.+-+| -.+|+|+.|.|||||+.+|+.-.. ..+.|.+
T Consensus 18 ~vs~~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g 60 (211)
T cd03264 18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60 (211)
T ss_pred CCEEEECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 714688897-5999999982399999999759668962999999
No 366
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.83 E-value=0.77 Score=25.08 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=54.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC-HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 850375266788999999998740789838993124652-2388999986427755328984157788034444445677
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERG-REVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAV 239 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~-rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~ 239 (438)
|.-++|.||+.+|||.++-.++..... .++|.+-++-. .|..+=++.++..--+.= .|-..|.
T Consensus 1 gmi~LVtGG~rSGKS~~AE~la~~~~~-~~~YiAT~~~~D~Em~~RI~~Hr~~R~~~w----~TiE~p~----------- 64 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGL-QVLYIATAQPLDDEMAARIAHHRQRRPAHW----QTVEEPL----------- 64 (170)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCC----EEEECCC-----------
T ss_conf 989999798763489999999985699-829997588888789999999997378995----7996466-----------
Q ss_pred HHHHHHHH--CCCCEEEEEECHHHHHHH
Q ss_conf 78888642--679889997098999999
Q gi|254780684|r 240 TIAEYFSS--KGDNVLLILDSITRFAHS 265 (438)
Q Consensus 240 ~iAEyfr~--~G~~Vll~~Ds~tr~a~A 265 (438)
.+++.+.. ...++ +++|++|.|.--
T Consensus 65 ~l~~~l~~~~~~~~~-vLlDclt~wl~N 91 (170)
T PRK05800 65 DLAELLRADAAPGRC-VLVDCLTTWVTN 91 (170)
T ss_pred CHHHHHHHHCCCCCE-EEEHHHHHHHHH
T ss_conf 789999874577886-872267899999
No 367
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.81 E-value=0.15 Score=30.28 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEE--ECCCCC--------HHHHH-HHHHHHCCC--CCCEEEE
Q ss_conf 2002235850375266788999999998740789838993--124652--------23889-999864277--5532898
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIIS--LVGERG--------REVRE-FIEDYLGDN--LKKSVVV 220 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~a--lIGeR~--------rev~e-fi~~~~~~~--l~~tvvv 220 (438)
.-+||.+|.-+-+.|+||+|||||++-++-+-..+..+-+ .+++.. |.+.- |.+.++-.. .-...++
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~f 100 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLF 100 (213)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCEECCCCCHHHHHEEEEECCCCCCCCCCCCCCEEE
T ss_conf 54786378479987788865788999998620667624568988872004361324322135425501444231214478
Q ss_pred EECCCCCHHHHHHHHHHHHH---HHHHHH
Q ss_conf 41577880344444456777---888864
Q gi|254780684|r 221 VATSDESPILRKMAPLTAVT---IAEYFS 246 (438)
Q Consensus 221 ~~t~d~~~~~r~~a~~~a~~---iAEyfr 246 (438)
+-..+----.|.++++.|+. .++.|.
T Consensus 101 Alp~~~KG~aRr~~a~aAL~~~gL~g~f~ 129 (213)
T COG4136 101 ALPATLKGNARRNAANAALERSGLDGAFH 129 (213)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 53712142777766888888852300322
No 368
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.79 E-value=0.29 Score=28.19 Aligned_cols=40 Identities=25% Similarity=0.195 Sum_probs=26.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCCC
Q ss_conf 358503752667889999999987407--8983899312465
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARSD--CFDKVIISLVGER 198 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR 198 (438)
-.++-+-|+|++|+|||.|++.++... ....++|.-..+.
T Consensus 43 ~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~ 84 (235)
T PRK08084 43 EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKR 84 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 898769998999988899999999999707985799877986
No 369
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=92.76 E-value=0.11 Score=31.23 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=27.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 752002235850375266788999999998740
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+|.|...-+|+..-+.|.||||||+|+..+...
T Consensus 155 ~~~L~~~l~~k~sv~~G~SGVGKSSLiN~L~~~ 187 (298)
T PRK00098 155 LDELKPLLAGKVTVLAGQSGVGKSTLLNALVPE 187 (298)
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 999999857986999878988788888760714
No 370
>PRK08082 consensus
Probab=92.76 E-value=0.24 Score=28.82 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 01112458752002-235850375266788999999998740
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
-+.||++.+|.++. +.+|+=+-|-|-+|+|||+|+-.|+.+
T Consensus 185 Gi~TGf~~LD~lt~G~~~g~LiviaaRPsmGKTa~alnia~~ 226 (453)
T PRK08082 185 GIPTGFTELDRMTAGFQRNDLIIVAARPSVGKTAFALNIAQN 226 (453)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 554884888864147775857999867887578999999999
No 371
>PRK08506 replicative DNA helicase; Provisional
Probab=92.73 E-value=0.21 Score=29.28 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEEC-CCCCCHHHHHHHHHHHC---CCCCEEEEE
Q ss_conf 01112458752002-23585037526-67889999999987407---898389931
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFA-GSGIGKSTLLSMFARSD---CFDKVIISL 194 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg-~~GvGKt~Ll~~i~~~~---~~dv~V~al 194 (438)
-+.||++.+|-++. +-+|+ +-|+| -++.|||.|+-.|+.+. ..-|.+|-+
T Consensus 175 Gi~TGf~~LD~~t~Gl~~gd-LiIIAARPsmGKTAfAlniA~~~a~~~~~V~~FSL 229 (473)
T PRK08506 175 GLDTGFKQLNKMTKGFNKGD-LIIIAARPSMGKTTLVLNMVLKALNQGKGVAFFSL 229 (473)
T ss_pred CCCCCHHHHHHHHCCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 47788087888726998562-79995079986789999999999965996589822
No 372
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.72 E-value=0.089 Score=31.95 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=28.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+-.|++|+.|.||||++.+|+....
T Consensus 20 ~vsf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~ 53 (301)
T TIGR03522 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6067885981999999999819999999967956
No 373
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.68 E-value=0.084 Score=32.11 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=35.5
Q ss_pred HHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEE
Q ss_conf 45875-200223585037526678899999999874078--98389931
Q gi|254780684|r 149 IRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISL 194 (438)
Q Consensus 149 Ir~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~al 194 (438)
++++| .=+.|-+|.-+||.|.||+|||||..+|.+-.. ...+.|-+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g 74 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG 74 (268)
T ss_pred EEEECCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 4875115689758987899936888778799999728388872699868
No 374
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.67 E-value=0.17 Score=29.83 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=13.0
Q ss_pred HHHHHHHHHC--CCCCCCCCCCHHHHHHCCHHH
Q ss_conf 9987665404--778432366324554200444
Q gi|254780684|r 264 HSIREIATNS--GELPVARGYPTSVFSELPRLL 294 (438)
Q Consensus 264 ~A~reis~~~--ge~P~~~gyp~~~~~~~~~l~ 294 (438)
+|.+.||+.+ ||.-+--|--|+=-+.+++.+
T Consensus 338 ~av~~vsf~i~~GE~l~lvG~sGsGKSTl~r~l 370 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRAL 370 (623)
T ss_pred EEEECCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 665234003589958999767876689999998
No 375
>KOG1433 consensus
Probab=92.66 E-value=0.62 Score=25.77 Aligned_cols=115 Identities=21% Similarity=0.149 Sum_probs=66.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCEEEEECC----CCCHHHHHHHH
Q ss_conf 013311001112458752002--235850375266788999999998740---789838993124----65223889999
Q gi|254780684|r 137 NRQRVEKGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKVIISLVG----ERGREVREFIE 207 (438)
Q Consensus 137 ~R~~i~e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~V~alIG----eR~rev~efi~ 207 (438)
+++.-.-.|.||.++.|-++- +.-|.=--|+|++++|||.|...++.. ...+++++-..+ +|--++.+
T Consensus 85 ~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~--- 161 (326)
T KOG1433 85 QLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAG--- 161 (326)
T ss_pred HHHCCCEEECCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCHHHHHHH---
T ss_conf 86167625415505566774267555835688558984477888899887068751189995211103321135666---
Q ss_pred HHHCCCCCCEEEEEECCCCCHHHHHH-HH--HHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 86427755328984157788034444-44--56777888864267988999709899
Q gi|254780684|r 208 DYLGDNLKKSVVVVATSDESPILRKM-AP--LTAVTIAEYFSSKGDNVLLILDSITR 261 (438)
Q Consensus 208 ~~~~~~l~~tvvv~~t~d~~~~~r~~-a~--~~a~~iAEyfr~~G~~Vll~~Ds~tr 261 (438)
..-...+. +.+.....+.. .- ......|+.|..+.+.-++++||.|.
T Consensus 162 ~~~~~~~~-------~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta 211 (326)
T KOG1433 162 RSGLRGRD-------TLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATA 211 (326)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 63030677-------888889999985666777799999986203116999413454
No 376
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.66 E-value=0.81 Score=24.92 Aligned_cols=88 Identities=23% Similarity=0.097 Sum_probs=54.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 5850375266788999999998740-789838993124652238899998642775532898415778803444444567
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
+|.-+=+.|-||+|||||+..+.+. .+....++.+=| .++++.+... -+-+...|..-....
T Consensus 23 kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDG---D~lR~~l~~d--------------lgfs~~dR~~n~~r~ 85 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDG---DNVRHGLCSD--------------LGFSDADRKENIRRV 85 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECH---HHHHHHHCCC--------------CCCCHHHHHHHHHHH
T ss_conf 98699987999998899999999999975997599777---9998743667--------------898999999999999
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf 77888864267988999709899999
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDSITRFAH 264 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~ 264 (438)
.-+|.++.+||..|++-+=|.....+
T Consensus 86 ~~lak~l~~~G~iVIvs~Isp~~~~R 111 (198)
T PRK03846 86 GEVAKLMVDAGLVVLTAFISPHRAER 111 (198)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHH
T ss_conf 99999998589836641478879999
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.65 E-value=0.11 Score=31.36 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=27.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5875200223585037526678899999999874
Q gi|254780684|r 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 150 r~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
..=+.-+.+..|.++.|-|.+|+|||+|+..|+-
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred EECCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 2146526547998799878999878899999964
No 378
>PRK08006 replicative DNA helicase; Provisional
Probab=92.65 E-value=0.25 Score=28.67 Aligned_cols=51 Identities=27% Similarity=0.262 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH----CCCCCEEEEE
Q ss_conf 01112458752002-235850375266788999999998740----7898389931
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS----DCFDKVIISL 194 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~----~~~dv~V~al 194 (438)
-+.||++.+|.++. +-.|+=+-|=|-+|+|||.|+-.|+.+ ...-|.+|.+
T Consensus 206 Gi~TGf~~LD~~t~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~~~~~V~~fSl 261 (471)
T PRK08006 206 GVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSL 261 (471)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 36688388986416882173899994699876999999999999866995799816
No 379
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=92.63 E-value=0.12 Score=31.10 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=72.5
Q ss_pred EEEEEEEEEECCEEEEECC---------------------CCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCC
Q ss_conf 2012899995258999826---------------------888873518999569-960799999741997999980485
Q gi|254780684|r 21 VQGGYISSITSVYYTVTCL---------------------SQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIG 78 (438)
Q Consensus 21 ~~~G~V~~V~G~ii~v~Gl---------------------~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~ 78 (438)
.-.|+|.++.+....|.-- ...+.+|+.|.++.. ...-.|.|..+..-+..+.== +.
T Consensus 8 ~l~G~Vi~~~~~fY~V~~d~~~~~~~~~llC~~Rg~lrk~~~~v~VGD~V~ve~~d~~~~~G~I~~IlpRkn~L~RP-~V 86 (351)
T PRK12289 8 QLLGTVVAVQANFYQVRLDQPPLNPPSLLLCTRRTRLKKIGQQVMVGDRVVVEEPDWQGQRGAIAEVLPRRTELDRP-PI 86 (351)
T ss_pred CEEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCEECC-CC
T ss_conf 43899997778679999546766777346678756642689987657779996417889818896870644515177-75
Q ss_pred CCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC--------CCCCCCCCCCCCHHHHHH
Q ss_conf 574678889972885552466688654307763047887775553012112543--------330001331100111245
Q gi|254780684|r 79 EEISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKV--------PPAMNRQRVEKGFKTGIR 150 (438)
Q Consensus 79 ~gI~~G~~V~~~g~~~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~i~~~~--------p~p~~R~~i~e~L~TGIr 150 (438)
++|--=-.|+....+ ++...+|-|.+= ..+--+ -+++..-. +..+-.+. ...+--.++.-...+|.
T Consensus 87 ANvDq~liV~s~~~P--~~~~~~LDRfLv-~ae~~~-i~~vivln-K~DL~~~~e~~~~~~~~~~~GY~~i~iS~~~~~- 160 (351)
T PRK12289 87 ANVDQILLVFALAEP--PLDPWQLSRFLV-KAESTG-LEIQLCLN-KADLVSPTQQQQWQDRLAQWGYQPLFISVEQGI- 160 (351)
T ss_pred CCCCEEEEEEECCCC--CCCHHHHHHHHH-HHHHCC-CCEEEEEE-HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-
T ss_conf 670359999965789--988779999999-999879-97899986-577499899999999999779828999678996-
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 87520022358503752667889999999987407
Q gi|254780684|r 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 151 ~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.||.|...-+|+..-+.|.||||||+|+..+.-..
T Consensus 161 gl~~L~~~L~~k~tv~~G~SGVGKSSLIN~L~p~~ 195 (351)
T PRK12289 161 GLEALLKQLRNKITVVAGPSGVGKSSLINRLIPDV 195 (351)
T ss_pred CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCH
T ss_conf 89999998759869998179887889887637412
No 380
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.63 E-value=0.23 Score=28.91 Aligned_cols=41 Identities=34% Similarity=0.464 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 01112458752002-235850375266788999999998740
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
-+.||++.+|-++- +.+|+=+-|-|.+|+|||.++-.|+.+
T Consensus 176 Gi~TG~~~LD~~~~Gl~~g~LiIiaARPsmGKTafalnia~n 217 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAEN 217 (421)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 787880789998369998868999854678745999999999
No 381
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=92.63 E-value=0.16 Score=30.07 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=33.7
Q ss_pred HHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf 200223585-037526678899999999874078983899312465223889
Q gi|254780684|r 154 IFTPLCHGQ-RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVRE 204 (438)
Q Consensus 154 ~l~pig~GQ-R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~e 204 (438)
-|..=-+|- =+++.|++|||||+|...||+.-+--.+=|++=|-| .++|
T Consensus 442 kL~~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~~--DeAE 491 (941)
T TIGR00763 442 KLRGKMKGPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVR--DEAE 491 (941)
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCE--EHHH
T ss_conf 4477888876787207269542227899999968804999526722--0311
No 382
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=92.62 E-value=0.12 Score=31.03 Aligned_cols=83 Identities=25% Similarity=0.316 Sum_probs=48.6
Q ss_pred HHHHHHH-HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEE
Q ss_conf 1124587-5200223585037526678899999999874078--983899312465223889999864277-55328984
Q gi|254780684|r 146 KTGIRVI-DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVV 221 (438)
Q Consensus 146 ~TGIr~I-D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~ 221 (438)
+-|-.++ |.=+++--|||+|+.|=.|.||||||+.+-|-.+ +.+. +=+|-=..=....+ =+.=| ....|.|.
T Consensus 1270 ~~G~avL~dlSFsv~~GQ~VGlLGRTGsGKSTLLSAlLRL~~T~GEI~-IDGvSW~SvtLQ~W---RKAFGViPQKvFi~ 1345 (1534)
T TIGR01271 1270 EAGRAVLQDLSFSVEAGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQ-IDGVSWNSVTLQKW---RKAFGVIPQKVFIF 1345 (1534)
T ss_pred CCCHHHHHHCCEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEE-ECCEEECCCCHHHH---HHHCCCCCCEEEEE
T ss_conf 020555641341443883577530268767899999999607798167-62335052122003---44413156347883
Q ss_pred E-C--CCCCHHHHH
Q ss_conf 1-5--778803444
Q gi|254780684|r 222 A-T--SDESPILRK 232 (438)
Q Consensus 222 ~-t--~d~~~~~r~ 232 (438)
+ | .|--|-+||
T Consensus 1346 sGTFR~NLDPy~~~ 1359 (1534)
T TIGR01271 1346 SGTFRKNLDPYEQW 1359 (1534)
T ss_pred CCCCCCCCCHHHHC
T ss_conf 15511368813422
No 383
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.57 E-value=0.099 Score=31.59 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
|.=+.+-+|+-.|+.|+.|.|||||+.+|+....
T Consensus 18 ~vs~~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~ 51 (208)
T cd03268 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5166886981999999999999999999957837
No 384
>PRK05748 replicative DNA helicase; Provisional
Probab=92.57 E-value=0.25 Score=28.63 Aligned_cols=42 Identities=31% Similarity=0.363 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 01112458752002-2358503752667889999999987407
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
-+.||++.+|-++. +.+|+=+-|-|-+|+|||+++-.|+.+.
T Consensus 185 Gi~TG~~~LD~~~~G~~~g~LiviaaRP~mGKTa~alnia~~~ 227 (448)
T PRK05748 185 GIPTGFRDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNV 227 (448)
T ss_pred EEECCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 1057827899982798867379998479987689999999999
No 385
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.55 E-value=0.24 Score=28.75 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=26.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5200223585037526678899999999874
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
|.-+.+..|--++|+|+||.|||||..+|.-
T Consensus 354 ~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 354 GISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 6236765886678878887657789999981
No 386
>KOG0060 consensus
Probab=92.52 E-value=0.074 Score=32.52 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=7.3
Q ss_pred HHHHCCCCC--CCC
Q ss_conf 277589713--114
Q gi|254780684|r 341 SLAEEGRYP--PVD 352 (438)
Q Consensus 341 ~la~~g~~P--aid 352 (438)
.|-+|=+|| +.|
T Consensus 516 TLRdQvIYP~~~~~ 529 (659)
T KOG0060 516 TLRDQVIYPLKAED 529 (659)
T ss_pred CHHHHEECCCCCCC
T ss_conf 44550332575322
No 387
>KOG0055 consensus
Probab=92.48 E-value=0.17 Score=29.88 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=31.8
Q ss_pred HHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 245875-200223585037526678899999999874078
Q gi|254780684|r 148 GIRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 148 GIr~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
-+++++ .-+.+-.||...++|+||+||||++..+.|.-+
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred CCHHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6643377579827998899988999879999999997268
No 388
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=92.48 E-value=0.74 Score=25.23 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=54.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 03752667889999999987407898389931246522388999986427755328984157788034444445677788
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
|+.+.|..|+|||+|+..+....-.. .+.-+|..- +..... .-++.+--++ -.+|++. -.-
T Consensus 2 KililG~~~sGKTsll~~l~~~~~~~--~~pT~g~~~-------~~~~~~--~~~l~iwD~~---G~~~~r~-----l~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNV-------ETVEYK--NISFTVWDVG---GQDKIRP-----LWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCCE-------EEEEEC--CEEEEEEECC---CCCCCCH-----HHH
T ss_conf 99999999999899999997299677--589687017-------999989--8999999789---9721465-----678
Q ss_pred HHHHHCCCCEEEEEEC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 8864267988999709--8999999876654047784
Q gi|254780684|r 243 EYFSSKGDNVLLILDS--ITRFAHSIREIATNSGELP 277 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds--~tr~a~A~reis~~~ge~P 277 (438)
.||++ -.-+++++|+ ..++.+|..++-..+.+++
T Consensus 63 ~Y~~~-a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~ 98 (159)
T cd04150 63 HYFQN-TQGLIFVVDSNDRERIGEAREELQRMLNEDE 98 (159)
T ss_pred HHCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCHH
T ss_conf 64768-7389999977777899999999999962353
No 389
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=92.46 E-value=0.41 Score=27.07 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=50.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 50375266788999999998740789838993124652238899998642775532898415778803444444567778
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTI 241 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~i 241 (438)
=|+.++|..++|||+|+..+..+..... ..-+|-.- +..... ...+.+.-++ -.+|++. -.
T Consensus 10 ~kililG~~~sGKTsil~~l~~~~~~~~--~pTvg~~~-------~~~~~~--~~~l~iwD~~---Gqe~~r~-----l~ 70 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNV-------ETVTYK--NVKFNVWDVG---GQDKIRP-----LW 70 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCC--CCCCCCEE-------EEEEEC--CEEEEEEECC---CCCCCCC-----HH
T ss_conf 8999999999998999999966998760--26267007-------999989--8899999899---9974660-----65
Q ss_pred HHHHHHCCCCEEEEEECH--HHHHHHHHHHHHHCCCC
Q ss_conf 888642679889997098--99999987665404778
Q gi|254780684|r 242 AEYFSSKGDNVLLILDSI--TRFAHSIREIATNSGEL 276 (438)
Q Consensus 242 AEyfr~~G~~Vll~~Ds~--tr~a~A~reis~~~ge~ 276 (438)
-.||++. .-+++++|+. .|+.+|..++--.+.++
T Consensus 71 ~~y~~~~-~~iifVvDstd~~~~~~~~~~l~~~l~~~ 106 (168)
T cd04149 71 RHYYTGT-QGLIFVVDSADRDRIDEARQELHRIINDR 106 (168)
T ss_pred HHHCCCC-CEEEEEEECCCHHHHHHHHHHHHHHHHCH
T ss_conf 7643788-66899983776789999999999997145
No 390
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.42 E-value=0.12 Score=31.01 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=21.6
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 022358503752667889999999987
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFA 182 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~ 182 (438)
+.+-.| -.+|.|++|+|||||+.+|.
T Consensus 18 l~ip~G-itaIvGpsGsGKSTLl~~i~ 43 (197)
T cd03278 18 IPFPPG-LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred EECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 973898-28999999998899999999
No 391
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=92.42 E-value=0.87 Score=24.71 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred EEECCCCCCHHHHHHHHHHHCCC-CCEEEEECC------CCCHH------HHHHHHHHHCCCC-CCEEEEEECCCCCHHH
Q ss_conf 75266788999999998740789-838993124------65223------8899998642775-5328984157788034
Q gi|254780684|r 165 GVFAGSGIGKSTLLSMFARSDCF-DKVIISLVG------ERGRE------VREFIEDYLGDNL-KKSVVVVATSDESPIL 230 (438)
Q Consensus 165 gIfg~~GvGKt~Ll~~i~~~~~~-dv~V~alIG------eR~re------v~efi~~~~~~~l-~~tvvv~~t~d~~~~~ 230 (438)
-|.|+||+||++|+..+.+.... -..++...- |...+ -.+|-+......+ .+.-
T Consensus 5 vl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~------------ 72 (182)
T pfam00625 5 VLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEHAE------------ 72 (182)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH------------
T ss_conf 99898999999999999984866734457655479998787896579965899999875437776264------------
Q ss_pred HHHHHHHHHHHH--HHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 444445677788--886426798899970989999998766
Q gi|254780684|r 231 RKMAPLTAVTIA--EYFSSKGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 231 r~~a~~~a~~iA--Eyfr~~G~~Vll~~Ds~tr~a~A~rei 269 (438)
+..-+.|++.. +-..++|++|++.+| ..-+..+++.
T Consensus 73 -~~g~~YGt~~~~I~~~~~~g~~vvl~id--~~g~~~lk~~ 110 (182)
T pfam00625 73 -FNGNYYGTSKEAIEQIAESGKICILDVD--IQGVKQLRKA 110 (182)
T ss_pred -HCCCCEEECHHHHHHHHHCCCEEEEEEC--HHHHHHHHHH
T ss_conf -0797256402777999867996999972--8999999874
No 392
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.39 E-value=0.1 Score=31.52 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=39.2
Q ss_pred HHHHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCEEEE--ECCCCCHHHHHHHHH
Q ss_conf 245875-2002235850375266788999999998740---789838993--124652238899998
Q gi|254780684|r 148 GIRVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKVIIS--LVGERGREVREFIED 208 (438)
Q Consensus 148 GIr~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~V~a--lIGeR~rev~efi~~ 208 (438)
.+.++| .=+.|-+|+..||+|-||.|||||+-+|+.- +.+.+.|-+ .-.-...+.+.+.++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~ 84 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQK 84 (339)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHH
T ss_conf 5156514068873886899974888867889999856579988649986874021786789998865
No 393
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=92.38 E-value=0.13 Score=30.79 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=25.3
Q ss_pred HHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8752002235-85037526678899999999874
Q gi|254780684|r 151 VIDIFTPLCH-GQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 151 ~ID~l~pig~-GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
.+|.|-+..+ |+...+.|.||||||+|++.+.-
T Consensus 183 gl~~L~~~l~~GkT~vl~G~SGVGKSTLiN~L~g 216 (353)
T PRK01889 183 GVDALQAWLKPGKTVALLGSSGVGKSTLVNALLG 216 (353)
T ss_pred CHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 7899999863497899977888669999987565
No 394
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=92.36 E-value=0.12 Score=30.98 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 587520022358503752667889999999987407--89838993124652238899998642
Q gi|254780684|r 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD--CFDKVIISLVGERGREVREFIEDYLG 211 (438)
Q Consensus 150 r~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR~rev~efi~~~~~ 211 (438)
.-+=.+.=+.+||-+.++|++|+|||.|+..|++.. +.-.+.|. .+.++++++..
T Consensus 36 ~~L~~~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~-------~~~~L~~~l~~ 92 (178)
T pfam01695 36 AELAGLDWIEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFT-------RTPDLVEQLKR 92 (178)
T ss_pred HHHHCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-------ECHHHHHHHHH
T ss_conf 9885597421587689989999878999999999999869859999-------61679999998
No 395
>PRK05642 DNA replication initiation factor; Validated
Probab=92.33 E-value=0.89 Score=24.64 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHC--CCCCEEEEE
Q ss_conf 3752667889999999987407--898389931
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSD--CFDKVIISL 194 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~al 194 (438)
+-|+|++|+|||.|+..+++.. ....++|.-
T Consensus 48 l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~ 80 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 899889999889999999999980799679978
No 396
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.33 E-value=0.24 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 037526678899999999874078983
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDK 189 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv 189 (438)
-+++||++|+|||||+..|++--....
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 478647998768889999999856773
No 397
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=92.33 E-value=0.12 Score=31.10 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=27.9
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 752002235850375266788999999998740
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+|.|....+|+.--+.|.||||||+|+..+.-.
T Consensus 198 l~~L~~~L~~ktsvf~GqSGVGKSSLiN~L~p~ 230 (344)
T PRK12288 198 LEPLEAALTGRISIFVGQSGVGKSSLINALLPE 230 (344)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCH
T ss_conf 999999876785999806876788887610753
No 398
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.29 E-value=0.13 Score=30.65 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=30.5
Q ss_pred HHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 5875-2002235850375266788999999998740789
Q gi|254780684|r 150 RVID-IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 150 r~ID-~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
.|+| .=+.+-+|+-.|++|+.|+|||||+.+|+..-..
T Consensus 19 ~al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p 57 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 987262789859829999999998499999999779778
No 399
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=92.28 E-value=0.14 Score=30.43 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHH----HHCC
Q ss_conf 3752667889999999987----4078
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFA----RSDC 186 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~----~~~~ 186 (438)
..|||++|.||||||..+. |+..
T Consensus 519 T~IfG~~G~GKTtLl~fL~a~~~ky~~ 545 (931)
T TIGR00929 519 TLIFGPTGSGKTTLLNFLLAQLQKYKP 545 (931)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 778888898469999999999742488
No 400
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.28 Score=28.35 Aligned_cols=45 Identities=29% Similarity=0.284 Sum_probs=36.3
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 200223585037526678899999999874078983899312465
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGER 198 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR 198 (438)
.+.+=-+|.=+++.|++|||||+|...||+..+--.+=+++=|.|
T Consensus 343 ~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvr 387 (782)
T COG0466 343 KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVR 387 (782)
T ss_pred HHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 861467885799978998870118999999958977999547654
No 401
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=92.23 E-value=0.11 Score=31.25 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=8.6
Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 2235850375266788999999998
Q gi|254780684|r 157 PLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 157 pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
.+-+|..++|.|.+|+|||||+..|
T Consensus 284 ~v~~GEi~gi~G~nGsGKsTLl~~L 308 (513)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCL 308 (513)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 8868848997479886589999998
No 402
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=92.20 E-value=0.1 Score=31.51 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=53.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHH--HH-CCCCCEEEEE--CCCCCHHHHHHHHHHHCCCC---CCEEEEEECC
Q ss_conf 520022358503752667889999999987--40-7898389931--24652238899998642775---5328984157
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFA--RS-DCFDKVIISL--VGERGREVREFIEDYLGDNL---KKSVVVVATS 224 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~--~~-~~~dv~V~al--IGeR~rev~efi~~~~~~~l---~~tvvv~~t~ 224 (438)
|.-+.|-.|-=+-+-|+||+||||||+-|. |. -++...|++- .|-...+..+.-.. -|+ ++.-+=+=||
T Consensus 23 di~L~i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~~L~ga~~~~l~~~RR~---iGyIFQ~HNLl~~LTA 99 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELKGASKKELVQVRRN---IGYIFQAHNLLGFLTA 99 (220)
T ss_pred CCCEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHCCCCHHHHHHHHHH---CCCEECCCHHCHHHHH
T ss_conf 7631771764798437889846889998876256555604782201026788899999876---3914412000100017
Q ss_pred CCCHHH-----HHHHHHHHHHH-HHHHHHCC--CCEEEEEECHH
Q ss_conf 788034-----44444567778-88864267--98899970989
Q gi|254780684|r 225 DESPIL-----RKMAPLTAVTI-AEYFSSKG--DNVLLILDSIT 260 (438)
Q Consensus 225 d~~~~~-----r~~a~~~a~~i-AEyfr~~G--~~Vll~~Ds~t 260 (438)
.+..-+ .......+.+- .+.+..-| +++=-.=++|+
T Consensus 100 ~QNVqM~~eL~~~~~~~~~~~~a~~~L~~VGL~~~~~y~P~~LS 143 (220)
T TIGR02982 100 RQNVQMALELQPNLSAQEAREKARAMLEAVGLGDRLDYYPENLS 143 (220)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCC
T ss_conf 78886489887611688999999999986060125540524367
No 403
>PRK08233 hypothetical protein; Provisional
Probab=92.10 E-value=0.22 Score=29.13 Aligned_cols=26 Identities=31% Similarity=0.176 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 03752667889999999987407898
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
=+||=||+|.|||+|+..|.+.-...
T Consensus 5 IIgIaGgSgSGKTtla~~l~~~l~~~ 30 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNS 30 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 99996888678999999999974677
No 404
>KOG0062 consensus
Probab=92.07 E-value=0.097 Score=31.65 Aligned_cols=32 Identities=41% Similarity=0.598 Sum_probs=29.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
++-+++.+|-|-|+.|..|+||||||-+|++.
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~ 129 (582)
T KOG0062 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIANG 129 (582)
T ss_pred CCCEEEECCCCCCEECCCCCCHHHHHHHHHHC
T ss_conf 78555631524321478987589999999845
No 405
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=92.06 E-value=0.15 Score=30.37 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 03752667889999999987407
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|+.+.|++|||||+|+..++.+.
T Consensus 2 KIlllGDsgVGKTSL~~~~~~~~ 24 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ 24 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989999999998398
No 406
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=92.03 E-value=0.26 Score=28.53 Aligned_cols=96 Identities=18% Similarity=0.288 Sum_probs=48.8
Q ss_pred HHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCCEEEE-----------ECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 8752002-235850375266788999999998740---789838993-----------1246522388999986427755
Q gi|254780684|r 151 VIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS---DCFDKVIIS-----------LVGERGREVREFIEDYLGDNLK 215 (438)
Q Consensus 151 ~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~---~~~dv~V~a-----------lIGeR~rev~efi~~~~~~~l~ 215 (438)
.++.++| .|+..|+||-|.+|+|||||...+.++ ...-|-|+| +.|-|-| +......
T Consensus 18 ll~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~R--------M~~~~~~ 89 (267)
T pfam03308 18 LLRRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTR--------MQRLAVD 89 (267)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHH--------HHHHCCC
T ss_conf 99998743599559987689988799999999999996898689999789998888630010777--------7650589
Q ss_pred CEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 328984157788-034444445677788886426798899970
Q gi|254780684|r 216 KSVVVVATSDES-PILRKMAPLTAVTIAEYFSSKGDNVLLILD 257 (438)
Q Consensus 216 ~tvvv~~t~d~~-~~~r~~a~~~a~~iAEyfr~~G~~Vll~~D 257 (438)
..+.|=+.+..- .+---...+-++.+- ..-|+|++++=.
T Consensus 90 ~~vfiRs~~srg~lGGls~~t~~~i~ll---eaaGfD~IivET 129 (267)
T pfam03308 90 PGAFIRSSPSRGALGGLSRATREAILLL---DAAGFDVIIIET 129 (267)
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHH---HHCCCCEEEEEC
T ss_conf 9858864577888887147699999999---977999999924
No 407
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.02 E-value=0.15 Score=30.29 Aligned_cols=90 Identities=24% Similarity=0.331 Sum_probs=45.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC-----CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 5037526678899999999874078-----98389931246522388999986427755328984157788034444445
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDC-----FDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPL 236 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~-----~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~ 236 (438)
.|+.|+|++|+||||++..|++.-. .+..--+.+-++ .|....+..+...+- +| + .-.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g~----lv----~--------d~i 63 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-TELGEEIKKYIDKGE----LV----P--------DEI 63 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHCCC-CHHHHHHHHHHHCCC----CC----C--------HHH
T ss_conf 979998999998899999999976997855220111100323-689999999987589----50----4--------176
Q ss_pred HHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHHH
Q ss_conf 67778888642-6798899970989999998766
Q gi|254780684|r 237 TAVTIAEYFSS-KGDNVLLILDSITRFAHSIREI 269 (438)
Q Consensus 237 ~a~~iAEyfr~-~G~~Vll~~Ds~tr~a~A~rei 269 (438)
+-..+-|.+.. ..+. .+++|..-|+..-.|-+
T Consensus 64 ~~~~v~~rl~~~d~~~-~~I~dg~PR~~~qa~~l 96 (178)
T COG0563 64 VNGLVKERLDEADCKA-GFILDGFPRTLCQARAL 96 (178)
T ss_pred HHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHH
T ss_conf 9979999997506577-29998998369999999
No 408
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=91.92 E-value=0.12 Score=30.99 Aligned_cols=88 Identities=27% Similarity=0.248 Sum_probs=49.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCC-----HHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 520022358503752667889999999987407--89838993124652-----23889999864277553289841577
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD--CFDKVIISLVGERG-----REVREFIEDYLGDNLKKSVVVVATSD 225 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR~-----rev~efi~~~~~~~l~~tvvv~~t~d 225 (438)
|.=++|-+++++.|.|.||+|||||+--+++.= ++..-=+-+=|..= -+.+.++..+-.+ =.++..|-=
T Consensus 492 di~L~I~~n~k~tiVGmSGSGKsTLaKLLV~FfePQ~~sG~I~Lng~~l~~iD~h~LRq~INYlPQe----P~IF~GsIL 567 (710)
T TIGR01193 492 DISLTIKKNEKITIVGMSGSGKSTLAKLLVGFFEPQAESGEILLNGISLKDIDRHELRQFINYLPQE----PYIFSGSIL 567 (710)
T ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHCCHHHHCCCCCCCCCC----CEEECCCHH
T ss_conf 6423650785489973679748999987520358998877365278244533734441233556887----845123178
Q ss_pred C------CHHHHHHHHHHHHHHHHH
Q ss_conf 8------803444444567778888
Q gi|254780684|r 226 E------SPILRKMAPLTAVTIAEY 244 (438)
Q Consensus 226 ~------~~~~r~~a~~~a~~iAEy 244 (438)
| -|...---.+.||.+||=
T Consensus 568 eNLLlGak~~~~~~~i~~A~~iAEI 592 (710)
T TIGR01193 568 ENLLLGAKENVSQDEILKAVEIAEI 592 (710)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 8765037899898999988402011
No 409
>KOG0055 consensus
Probab=91.89 E-value=0.27 Score=28.37 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCC-CCCEEEEEEC
Q ss_conf 889999864277-5532898415
Q gi|254780684|r 202 VREFIEDYLGDN-LKKSVVVVAT 223 (438)
Q Consensus 202 v~efi~~~~~~~-l~~tvvv~~t 223 (438)
-...+++.+... ..||++|++.
T Consensus 524 se~iVQ~ALd~a~~GrTTivVaH 546 (1228)
T KOG0055 524 SERVVQEALDKASKGRTTIVVAH 546 (1228)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 89999999999744986999961
No 410
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=91.84 E-value=0.24 Score=28.82 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHH----HHCCCCCE
Q ss_conf 503752667889999999987----40789838
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFA----RSDCFDKV 190 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~----~~~~~dv~ 190 (438)
.-..|+|+.|.|||+|++.++ |+.++.+.
T Consensus 442 GHtlI~GpTGsGKTvll~~l~~q~~ry~~~~vf 474 (815)
T PRK13873 442 GHTLVVGPTGAGKSVLLALMALQFRRYPGSQVF 474 (815)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 643897889998999999999998644898489
No 411
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.84 E-value=0.78 Score=25.07 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=47.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEE-ECCCCCHHHHHHHHHH
Q ss_conf 50375266788999999998740--78983899312465223889999864277-55328984-1577880344444456
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARS--DCFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVV-ATSDESPILRKMAPLT 237 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~--~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~-~t~d~~~~~r~~a~~~ 237 (438)
-=+++.|-.|+||||-++-++++ .+.-.|++++ |-.-|-.+ ++++.-.+ .-..-+|. ....||+.. +|-
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA-~DTFRAaA--iEQL~~w~er~gv~vI~~~~G~DpAaV----afD 212 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA-GDTFRAAA--IEQLEVWGERLGVPVISGKEGADPAAV----AFD 212 (340)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE-CCHHHHHH--HHHHHHHHHHHCCEEECCCCCCCCHHH----HHH
T ss_conf 79999934888637179999999997898699982-33478999--999999999959927825999980899----999
Q ss_pred HHHHHHHHHHCCCCEEEE
Q ss_conf 777888864267988999
Q gi|254780684|r 238 AVTIAEYFSSKGDNVLLI 255 (438)
Q Consensus 238 a~~iAEyfr~~G~~Vll~ 255 (438)
|+.. -..+|.|||++
T Consensus 213 Ai~~---Akar~~Dvvli 227 (340)
T COG0552 213 AIQA---AKARGIDVVLI 227 (340)
T ss_pred HHHH---HHHCCCCEEEE
T ss_conf 9999---99769999999
No 412
>PRK08840 replicative DNA helicase; Provisional
Probab=91.83 E-value=0.34 Score=27.66 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 001112458752002-235850375266788999999998740
Q gi|254780684|r 143 KGFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 143 e~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
.-+.||++.+|-++. +-.|+=+-|=|-+|.|||+|+-.|+.+
T Consensus 198 ~Gi~TG~~~LD~~~~Gl~~G~LiviaaRPsmGKTalalnia~n 240 (464)
T PRK08840 198 TGVSTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCEN 240 (464)
T ss_pred CCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 3688898999875369875767999837987368999999999
No 413
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.80 E-value=0.49 Score=26.54 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=26.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEEC
Q ss_conf 75200223585037526678899999999874078--983899312
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISLV 195 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~alI 195 (438)
+....+--.++-+-|+|++|+|||.|+..+++... ...++|.-+
T Consensus 29 l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~ 74 (226)
T TIGR03420 29 LRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 9987646688869998999998899999999998626995799529
No 414
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.75 E-value=1 Score=24.18 Aligned_cols=91 Identities=21% Similarity=0.064 Sum_probs=58.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 35850375266788999999998740-78983899312465223889999864277553289841577880344444456
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLT 237 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~ 237 (438)
-+|--+=+.|-||.|||||+..+.+. .+....++.+=| .++++.+... -+-+...|......
T Consensus 2 ~kg~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDG---D~lR~~l~~~--------------lgfs~~dR~~n~~r 64 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDG---DIVRTNLSKG--------------LGFSKEDRDTNIRR 64 (175)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC---HHHHHHHCCC--------------CCCCHHHHHHHHHH
T ss_conf 988899988989999999999999999986996799776---8888753678--------------89898999999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 77788886426798899970989999998
Q gi|254780684|r 238 AVTIAEYFSSKGDNVLLILDSITRFAHSI 266 (438)
Q Consensus 238 a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~ 266 (438)
..-+|.+|.++|..|++-+=|.++-.++.
T Consensus 65 ~~~la~~l~~~g~~vIvs~isp~~~~R~~ 93 (175)
T PRK00889 65 IGFVAHLLTRHGVIVLVSAISPYRETREE 93 (175)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHH
T ss_conf 99999999818986888504799999999
No 415
>PRK06749 replicative DNA helicase; Provisional
Probab=91.70 E-value=0.4 Score=27.18 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 001112458752002-235850375266788999999998740
Q gi|254780684|r 143 KGFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 143 e~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
.-+.||++.+|-++. +-+|+=+-|=|-++.|||+++-.|+.+
T Consensus 167 ~Gi~TGf~~LD~lt~Gl~~g~LiviaaRPsmGKTa~alnia~~ 209 (428)
T PRK06749 167 TGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLH 209 (428)
T ss_pred CCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7687783889875249998868999627989768999999999
No 416
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.67 E-value=0.26 Score=28.52 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 375266788999999998740789
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
+||-|++|+||||++..|.+.-..
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898899988599999999998099
No 417
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=91.66 E-value=0.13 Score=30.65 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.1
Q ss_pred HHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 4587520-022358503752667889999999987
Q gi|254780684|r 149 IRVIDIF-TPLCHGQRIGVFAGSGIGKSTLLSMFA 182 (438)
Q Consensus 149 Ir~ID~l-~pig~GQR~gIfg~~GvGKt~Ll~~i~ 182 (438)
.+|++++ +-+.+|...++.|..|+|||||+..++
T Consensus 5 ~~vL~gln~~~~~G~~~aLlG~NGaGKsTLl~~Ln 39 (190)
T TIGR01166 5 PEVLKGLNFAVERGEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 52035423022057168987289985789988743
No 418
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=91.61 E-value=0.15 Score=30.35 Aligned_cols=26 Identities=31% Similarity=0.623 Sum_probs=10.2
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 02235850375266788999999998
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
+.+.+|+..+|.|.+|+|||||+..|
T Consensus 21 l~i~~Gei~~LvG~sGsGKSTL~~~l 46 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVL 46 (520)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 79999989999999996999999999
No 419
>PRK07263 consensus
Probab=91.59 E-value=0.43 Score=26.92 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 01112458752002-2358503752667889999999987407
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
-+.||++.+|-++. +-.|+=+-|=|-+|.|||+|+-.|+.+.
T Consensus 185 Gi~TGf~~LD~~t~Gl~~GdLiviaaRPsmGKTa~alnia~~i 227 (453)
T PRK07263 185 GLPTGFRDLDKITTGLHPDQLIILAARPAVGKTAFVLNIAQNV 227 (453)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6758858799773289978689997278884789999999999
No 420
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=91.49 E-value=0.23 Score=28.89 Aligned_cols=114 Identities=24% Similarity=0.291 Sum_probs=58.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEE---------ECCC-CCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 375266788999999998740789838993---------1246-522388999986427755328984157788034444
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIIS---------LVGE-RGREVREFIEDYLGDNLKKSVVVVATSDESPILRKM 233 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~a---------lIGe-R~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~ 233 (438)
+=+.|++|+|||+|+-.+|++-+-=|+.+- |||+ +|-+-+..+++ =|-=|...+|..-.++.
T Consensus 24 vHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~Dq--------fihnV~K~~d~~~~~W~ 95 (265)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQ--------FIHNVVKLEDIVRQNWV 95 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEC--------CEEEEECCCCCCCCCCC
T ss_conf 6744788855689999999736896899865823265442315467522223201--------21113425122002667
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH--C---CCCCCCCCCCHHHHHHCCHH
Q ss_conf 445677788886426798899970989999998766540--4---77843236632455420044
Q gi|254780684|r 234 APLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATN--S---GELPVARGYPTSVFSELPRL 293 (438)
Q Consensus 234 a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~--~---ge~P~~~gyp~~~~~~~~~l 293 (438)
=-..-+|+=|-| =||||-.||=-=+-+-|=|+ - =+.|+.++-+.|| ..||.|
T Consensus 96 D~rLt~Av~eG~-------TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv-~VhP~F 152 (265)
T TIGR02640 96 DNRLTLAVREGF-------TLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYV-DVHPEF 152 (265)
T ss_pred CCHHHHHHHCCC-------EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCE-EECCCC
T ss_conf 835789975697-------276647578862045656755552321588878778722-578870
No 421
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.45 E-value=0.19 Score=29.60 Aligned_cols=52 Identities=29% Similarity=0.305 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH---HCCCCCEEEEECCCCCHH
Q ss_conf 5875200223585037526678899999999874---078983899312465223
Q gi|254780684|r 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFAR---SDCFDKVIISLVGERGRE 201 (438)
Q Consensus 150 r~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~---~~~~dv~V~alIGeR~re 201 (438)
.+-|.-+.|-+|++.|..|..|.||||++.|+.- -+.+.|-|-+.+=-|.++
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~ 93 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRRE 93 (325)
T ss_pred HHHEEEEECCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCHHHH
T ss_conf 6551145348986898875888860333989738603688758745868523379
No 422
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=91.40 E-value=0.15 Score=30.25 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=19.6
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 0223585037526678899999999874
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
+.+-+|..++|.|.+|+|||||+.+|+.
T Consensus 273 ~~v~~GEi~gi~G~nGsGKsTL~~~l~G 300 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4766881899667888768899999818
No 423
>PRK09165 replicative DNA helicase; Provisional
Probab=91.37 E-value=0.32 Score=27.89 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 001112458752002-2358503752667889999999987407
Q gi|254780684|r 143 KGFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 143 e~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.-+.||++.+|-++- +-+|+=+-|=|-+|+|||+|+-.|+.|.
T Consensus 186 ~Gi~TGf~~LD~~t~G~~~GdLiIIAARPsmGKTafaLniA~n~ 229 (484)
T PRK09165 186 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNA 229 (484)
T ss_pred CCEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 73315844599871588877379996079997789999999999
No 424
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.27 E-value=0.4 Score=27.14 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH----CCCCCEEEE
Q ss_conf 375266788999999998740----789838993
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARS----DCFDKVIIS 193 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~----~~~dv~V~a 193 (438)
+-|+|++|+|||.||+.|++. ...-.++|.
T Consensus 148 LfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~ 181 (447)
T PRK00149 148 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 181 (447)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5897799887889999999999985899728995
No 425
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=91.25 E-value=1.1 Score=24.06 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=48.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 03752667889999999987407898389931246522388999986427755328984157788034444445677788
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
|+.|+|-.|+|||+|+..+..+...+ .+.--+|-.. +.+.-.+ .+..+.-.+. ..+++.- --
T Consensus 1 kIlilGLd~aGKTTil~~l~~~~~~~-~~~PT~Gf~~-------~~i~~~~--~~l~~wDlgG---q~~~R~~-----W~ 62 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLE-SVVPTTGFNS-------VAIPTQD--AIMELLEIGG---SQNLRKY-----WK 62 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCE-------EEEEECC--EEEEEEECCC---HHHHHHH-----HH
T ss_conf 99999679998999999981699876-5356327746-------9999899--9999985375---2888656-----99
Q ss_pred HHHHHCCCCEEEEEEC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 8864267988999709--8999999876654047784
Q gi|254780684|r 243 EYFSSKGDNVLLILDS--ITRFAHSIREIATNSGELP 277 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds--~tr~a~A~reis~~~ge~P 277 (438)
.|| ..-.-+++|+|| -.|+.+|..|+--.+.+++
T Consensus 63 ~Y~-~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~ 98 (164)
T cd04162 63 RYL-SGSQGLIFVVDSADSERLPLARQELHQLLQHPP 98 (164)
T ss_pred HHH-HCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 871-177589999956888899999999999970879
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.16 E-value=1.2 Score=23.76 Aligned_cols=87 Identities=30% Similarity=0.289 Sum_probs=46.7
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEEEC------CCCCHH------HHHHHHHHHCCC-CCCEEEEEEC
Q ss_conf 2358503752667889999999987407898-3899312------465223------889999864277-5532898415
Q gi|254780684|r 158 LCHGQRIGVFAGSGIGKSTLLSMFARSDCFD-KVIISLV------GERGRE------VREFIEDYLGDN-LKKSVVVVAT 223 (438)
Q Consensus 158 ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d-v~V~alI------GeR~re------v~efi~~~~~~~-l~~tvvv~~t 223 (438)
+-+|.=+-|-|+||+||++|+..+.+..... ..++... ||...+ -.+|-+...... +.++.+.
T Consensus 4 ~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~--- 80 (208)
T PRK00300 4 MRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVF--- 80 (208)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEC---
T ss_conf 41883899999998899999999997299868998974688989987789657996199999998628366789983---
Q ss_pred CCCCHHHHHHHHHHHHHHH--HHHHHCCCCEEEEEE
Q ss_conf 7788034444445677788--886426798899970
Q gi|254780684|r 224 SDESPILRKMAPLTAVTIA--EYFSSKGDNVLLILD 257 (438)
Q Consensus 224 ~d~~~~~r~~a~~~a~~iA--Eyfr~~G~~Vll~~D 257 (438)
.-|.|+... +-..++|++|++-+|
T Consensus 81 ----------g~~YGT~~~~I~~~~~~G~~vildid 106 (208)
T PRK00300 81 ----------GNYYGTPREPVEEALAAGKDVLLEID 106 (208)
T ss_pred ----------CCCEECCHHHHHHHHHCCCCEEEECC
T ss_conf ----------87035246999999856998797467
No 427
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.14 E-value=0.28 Score=28.36 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=18.7
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 02235850375266788999999998740
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+.+-+|+-.||.|.+|.|||||+.+|+.-
T Consensus 284 f~v~~GEi~gl~G~nGsGKsTL~~~l~Gl 312 (510)
T PRK09700 284 FSVCRGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 78748818999768886288999998198
No 428
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.11 E-value=0.14 Score=30.52 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=23.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHH-HHH
Q ss_conf 52002235850375266788999999-998
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLL-SMF 181 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll-~~i 181 (438)
|.=+++-+|+-.+|.|.+|+|||||+ ..|
T Consensus 13 ~Vsl~i~~Ge~~aIvG~nGsGKSTL~~~~l 42 (226)
T cd03270 13 NVDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 748998599899998789960989836166
No 429
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=91.10 E-value=0.28 Score=28.36 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=31.0
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCEEEE
Q ss_conf 20022358503752667889999999987407---89838993
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD---CFDKVIIS 193 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~---~~dv~V~a 193 (438)
.=-++-.|++--|.|..|.|||||+.+++... .+++.+++
T Consensus 50 isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G 92 (257)
T COG1119 50 LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLG 92 (257)
T ss_pred CCEEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 4305369984799888987789999999612588777104622
No 430
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=91.00 E-value=0.31 Score=28.01 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHH----HHCCCCCEEE
Q ss_conf 03752667889999999987----4078983899
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFA----RSDCFDKVII 192 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~ 192 (438)
-..|+|+.|.|||+|++.++ |+.++.+.+|
T Consensus 458 HtlIiGpTGsGKTvll~fl~aq~~ky~~~~vf~F 491 (818)
T PRK13830 458 HTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAF 491 (818)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 0589899999889999999999864279838997
No 431
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.00 E-value=0.47 Score=26.68 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 0375266788999999998740789838
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKV 190 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~ 190 (438)
.++++|++|+|||||+..|++-.+...-
T Consensus 53 H~Ll~GPPGlGKTTLA~iiA~E~~~~~~ 80 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 0576588998899999999998688815
No 432
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.99 E-value=0.19 Score=29.48 Aligned_cols=49 Identities=31% Similarity=0.304 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 2458752002235850375266788999999998740789838993124
Q gi|254780684|r 148 GIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVG 196 (438)
Q Consensus 148 GIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIG 196 (438)
|--++|.-+.+---.=..|||.||.|||+|+.||+--...|.-.+.+=|
T Consensus 11 G~~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lng 59 (352)
T COG4148 11 GNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG 59 (352)
T ss_pred CCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 7627987436877856999647888716189897434776661899898
No 433
>PRK06904 replicative DNA helicase; Validated
Probab=90.93 E-value=0.47 Score=26.69 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 01112458752002-235850375266788999999998740
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
-+.||++.+|-++. +-+|+=+-|=|-++.|||.|+-.|+.+
T Consensus 203 Gi~TG~~~LD~~t~Gl~~g~LiViAaRPsmGKTa~alnia~n 244 (472)
T PRK06904 203 GVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCEN 244 (472)
T ss_pred EECCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 322897999744158875757999737987568999999999
No 434
>PTZ00243 ABC transporter; Provisional
Probab=90.91 E-value=0.17 Score=29.79 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=26.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 52002235850375266788999999998740
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|.-+.+-+||-..|.|.-|+|||+||..|-..
T Consensus 678 dinl~v~~G~L~~IvG~vGSGKSSLL~aiLGE 709 (1560)
T PTZ00243 678 DVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ 709 (1560)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 30588659978999899998799999999688
No 435
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=90.89 E-value=0.33 Score=27.76 Aligned_cols=30 Identities=27% Similarity=0.202 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 375266788999999998740789838993
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIIS 193 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~a 193 (438)
+++.|++|+|||+++..+|+..+...+-+.
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~~i~ 31 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFRRIQ 31 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 878989987699999999999599816888
No 436
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=90.87 E-value=0.86 Score=24.74 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=52.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 03752667889999999987407898389931246522388999986427755328984157788034444445677788
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
|+.++|..|+|||+|+..+....-.. ...-+|-.-. ..... ..+..+--++. .+|++. -.-
T Consensus 19 kililGl~~sGKTsil~~l~~~~~~~--~~pTvg~~~~-------~~~~~--~~~l~iwD~~G---qe~~r~-----lw~ 79 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLKLGEVVT--TIPTIGFNVE-------TVEYK--NLKFTMWDVGG---QDKLRP-----LWR 79 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCCEE-------EEEEC--CEEEEEEECCC---CCCCCH-----HHH
T ss_conf 99999679988999999996299777--3786884569-------99978--88999998999---845474-----787
Q ss_pred HHHHHCCCCEEEEEECH--HHHHHHHHHHHHHCCCCC
Q ss_conf 88642679889997098--999999876654047784
Q gi|254780684|r 243 EYFSSKGDNVLLILDSI--TRFAHSIREIATNSGELP 277 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~--tr~a~A~reis~~~ge~P 277 (438)
.||++ -.-+++|+|+. .|+.+|..++.-.+.++.
T Consensus 80 ~yy~~-~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~ 115 (182)
T PTZ00133 80 HYYQN-TNGIIFVVDSNDRERIGDARQELEKMLAEDE 115 (182)
T ss_pred HCCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCHH
T ss_conf 60567-6449999966787899999999999971442
No 437
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=90.85 E-value=1 Score=24.11 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=50.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 03752667889999999987407898389931246522388999986427755328984157788034444445677788
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
|+.++|..|+|||+|+..+....-... ..-+|-.-.. +.-.+ ....+.-++.+ ++++.- .-
T Consensus 1 KIlilGl~~sGKTtil~~l~~~~~~~~--~pT~G~~~~~-------i~~~~--~~l~iwD~gG~---~~~r~~-----w~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQP--IPTIGFNVET-------VEYKN--LKFTIWDVGGK---HKLRPL-----WK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCC--CCCCCCCEEE-------EEECC--EEEEEEECCCC---CCCCHH-----HH
T ss_conf 999999899988999999957996897--7868816699-------99898--89999989997---244636-----78
Q ss_pred HHHHHCCCCEEEEEECH--HHHHHHHHHHHHHCCCC
Q ss_conf 88642679889997098--99999987665404778
Q gi|254780684|r 243 EYFSSKGDNVLLILDSI--TRFAHSIREIATNSGEL 276 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~--tr~a~A~reis~~~ge~ 276 (438)
.||++ -.-+++++|+. .|+..|..++...+.++
T Consensus 62 ~Yy~~-~~~iIfVvDssd~~~~~ea~~~l~~ll~~~ 96 (169)
T cd04158 62 HYYLN-TQAVVFVVDSSHRDRVSEAHSELAKLLTEK 96 (169)
T ss_pred HHCCC-CCEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 75557-627999998630677999999999997127
No 438
>KOG0737 consensus
Probab=90.85 E-value=0.67 Score=25.54 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=51.8
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC---EEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEEECCCCCHHHHH
Q ss_conf 23585037526678899999999874078983---899312465223889999864--2775532898415778803444
Q gi|254780684|r 158 LCHGQRIGVFAGSGIGKSTLLSMFARSDCFDK---VIISLVGERGREVREFIEDYL--GDNLKKSVVVVATSDESPILRK 232 (438)
Q Consensus 158 ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv---~V~alIGeR~rev~efi~~~~--~~~l~~tvvv~~t~d~~~~~r~ 232 (438)
-.+| +++||++|+|||.|+-.+++.+.+.. .+..++++--.|....+..+. ...++-+++++.--|..-..|-
T Consensus 126 p~kG--iLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~ 203 (386)
T KOG0737 126 PPKG--ILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR 203 (386)
T ss_pred CCCC--CEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf 8643--05118998218899999998727971000136553266777888999998206534861565665888986404
Q ss_pred HHHHHHH--HHHHHH
Q ss_conf 4445677--788886
Q gi|254780684|r 233 MAPLTAV--TIAEYF 245 (438)
Q Consensus 233 ~a~~~a~--~iAEyf 245 (438)
..-.-|| .-+|+.
T Consensus 204 s~dHEa~a~mK~eFM 218 (386)
T KOG0737 204 STDHEATAMMKNEFM 218 (386)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 642799999999999
No 439
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.83 E-value=0.22 Score=29.07 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 3752667889999999987407
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
+||=|+||+||||++..|.+.-
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l 23 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998989778999999999998
No 440
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.77 E-value=0.33 Score=27.82 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 37526678899999999874078
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
+||=|+++.|||||+..|.+.-.
T Consensus 2 IgIaG~S~SGKTTla~~L~~~l~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 89968888759999999999879
No 441
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=90.76 E-value=0.33 Score=27.74 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHH----HHCCCCCEEE
Q ss_conf 03752667889999999987----4078983899
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFA----RSDCFDKVII 192 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~----~~~~~dv~V~ 192 (438)
-..|+|+.|.|||+||+.++ |+.++.+.+|
T Consensus 490 HTlIiGpTGaGKTvll~fL~aQ~~rY~~~~vf~F 523 (852)
T PRK13891 490 HTFMFGPTGAGKSTHLGIIAAQLRRYAGMSIYAF 523 (852)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 4078789999889999999999744189818987
No 442
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=90.74 E-value=0.22 Score=29.00 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 50375266788999999998740789
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
-|+.++|++|+|||+|+..+.++.-.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 79999999999889999999647676
No 443
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=90.70 E-value=0.29 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=17.5
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 0223585037526678899999999874
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
+.+-+|..++|.|.+|.|||||+.+|+.
T Consensus 269 f~v~~GEivgl~G~nGsGKsTL~~~l~G 296 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9996896899778999978899999819
No 444
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=90.68 E-value=1.1 Score=23.86 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=50.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 03752667889999999987407898389931246522388999986427755328984157788034444445677788
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
|+.++|.+|+|||+|+..+..+.... ...-+|-.-. ..... .-+..+--++.+ +|+++. .-
T Consensus 15 kililG~~~~GKTsil~~l~~~~~~~--~~pTvg~~~~-------~~~~~--~~~l~iwD~~Gq---e~~r~l-----~~ 75 (175)
T smart00177 15 RILMVGLDAAGKTTILYKLKLGESVT--TIPTIGFNVE-------TVTYK--NISFTVWDVGGQ---DKIRPL-----WR 75 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCEEE-------EEEEC--CEEEEEEECCCC---CCCCHH-----HH
T ss_conf 99999889999899999996599777--5797881079-------99989--899999989998---545536-----77
Q ss_pred HHHHHCCCCEEEEEECH--HHHHHHHHHHHHHCCCC
Q ss_conf 88642679889997098--99999987665404778
Q gi|254780684|r 243 EYFSSKGDNVLLILDSI--TRFAHSIREIATNSGEL 276 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~--tr~a~A~reis~~~ge~ 276 (438)
.||++ -.-+++|+|+. .|+.+|..++--.+.++
T Consensus 76 ~Yy~~-a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~ 110 (175)
T smart00177 76 HYYTN-TQGLIFVVDSNDRDRIDEAREELHRMLNED 110 (175)
T ss_pred HHCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCH
T ss_conf 75577-618999986687789999999999996315
No 445
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=90.65 E-value=1.3 Score=23.44 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=41.9
Q ss_pred EECCCCCCHHHHHHHHHHHC-CCCCEEEEE-------------CCCCC--------HHHHHHHHHHHCCCC--CCEEEEE
Q ss_conf 52667889999999987407-898389931-------------24652--------238899998642775--5328984
Q gi|254780684|r 166 VFAGSGIGKSTLLSMFARSD-CFDKVIISL-------------VGERG--------REVREFIEDYLGDNL--KKSVVVV 221 (438)
Q Consensus 166 Ifg~~GvGKt~Ll~~i~~~~-~~dv~V~al-------------IGeR~--------rev~efi~~~~~~~l--~~tvvv~ 221 (438)
+=|++|.|||+++.++...- ...++++-. ..+.. +++..+.+..+...+ .+++++=
T Consensus 17 laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~~~P~y~~l~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~r~n~iie 96 (191)
T pfam06414 17 LGGQPGAGKTELARALLEELGGGNVVRIDPDELRTYHPDYDELQKADPKDASELTQPDASRWVEKLIDYAIERGYNIILE 96 (191)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 95799888899999998753789938971358788777478655407677899989999999999999999759998985
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 157788034444445677788886426798899970
Q gi|254780684|r 222 ATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILD 257 (438)
Q Consensus 222 ~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~D 257 (438)
+|...+ .....+++.|++.|++|-+++=
T Consensus 97 gT~~~~--------~~~~~~~~~lk~~GY~v~v~~V 124 (191)
T pfam06414 97 GTLRSP--------DVARKLARKLKAAGYEVEVYVV 124 (191)
T ss_pred CCCCCH--------HHHHHHHHHHHHCCCEEEEEEE
T ss_conf 777897--------9999999999978997999999
No 446
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=90.63 E-value=0.36 Score=27.46 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=29.3
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 752002235850375266788999999998740
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
=|.=+..-+|+=.||+|..|.||||+|-||+--
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl 51 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATL 51 (245)
T ss_pred HHEEEEECCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 652578506649998768988712379999983
No 447
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.61 E-value=0.52 Score=26.36 Aligned_cols=42 Identities=31% Similarity=0.425 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 001112458752002-235850375266788999999998740
Q gi|254780684|r 143 KGFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 143 e~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+-|.+....+|-++- +.+|+=.-|.|.+|+|||+++.+++.+
T Consensus 11 ~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~ 53 (271)
T cd01122 11 EEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 5665881668887379999808999968998699999999999
No 448
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=90.56 E-value=0.54 Score=26.22 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCE-----EEEECCCCCHHHHHHHH
Q ss_conf 3300013311001112458752002235850375266788999999998740789838-----99312465223889999
Q gi|254780684|r 133 PPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKV-----IISLVGERGREVREFIE 207 (438)
Q Consensus 133 p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~-----V~alIGeR~rev~efi~ 207 (438)
-|-+.|..+.+.+.- -..| .-++++|+.|||||.|+..+|+-.++-.+ -|-=+|=-||.|-..+.
T Consensus 32 rNr~RR~~l~~~lr~------Ei~p----kNILmIGPTGvGKTeIARrLAkl~~aPFvkveATk~TEvGYvGrDVEsiIr 101 (442)
T PRK05201 32 RNRWRRMQLPEELRD------EVTP----KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIR 101 (442)
T ss_pred HHHHHHHCCCCCCCC------CCCC----CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 777875316622123------3464----316887888866789999999984898587521310003435643788999
Q ss_pred H
Q ss_conf 8
Q gi|254780684|r 208 D 208 (438)
Q Consensus 208 ~ 208 (438)
+
T Consensus 102 d 102 (442)
T PRK05201 102 D 102 (442)
T ss_pred H
T ss_conf 9
No 449
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=90.45 E-value=0.48 Score=26.57 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=21.3
Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 22358503752667889999999987
Q gi|254780684|r 157 PLCHGQRIGVFAGSGIGKSTLLSMFA 182 (438)
Q Consensus 157 pig~GQR~gIfg~~GvGKt~Ll~~i~ 182 (438)
.+..|+-..|.|+.|.|||+++.+|+
T Consensus 17 ~l~~g~~~iItGpN~sGKSt~Lr~i~ 42 (162)
T cd03227 17 TFGEGSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred ECCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 60898689998998775799999999
No 450
>PRK08760 replicative DNA helicase; Provisional
Probab=90.42 E-value=0.45 Score=26.78 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 01112458752002-2358503752667889999999987407
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
-+.||++.+|.++. +-.|+=+-|=|-++.|||.|+-.|+.+.
T Consensus 211 Gi~TG~~~LD~~t~Gl~~G~LiViaaRPsmGKTalalnia~~~ 253 (476)
T PRK08760 211 GLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYA 253 (476)
T ss_pred ECCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 3677968899744699877779998778874789999999999
No 451
>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=90.41 E-value=1.4 Score=23.30 Aligned_cols=109 Identities=23% Similarity=0.268 Sum_probs=81.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE------CCCCCHH-HHHH----HHHHH-CCCCCCEEEEEECCCCCHHH
Q ss_conf 03752667889999999987407898389931------2465223-8899----99864-27755328984157788034
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISL------VGERGRE-VREF----IEDYL-GDNLKKSVVVVATSDESPIL 230 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~al------IGeR~re-v~ef----i~~~~-~~~l~~tvvv~~t~d~~~~~ 230 (438)
.+|+| |||+|==+.+..|.|.-..+-.||++ =|||..+ +.|+ ++.+. .+.++=-||=||||.-.+.+
T Consensus 2 tIgvF-DSGvGGLsV~~ei~~~lp~~~yiY~~D~~~~PYG~ks~~~i~e~v~~~~~~l~e~~~ik~lv~ACNTasa~ale 80 (262)
T TIGR00067 2 TIGVF-DSGVGGLSVLKEILKQLPKEEYIYVGDTARVPYGEKSPEKILEYVLELLEFLKESYNIKLLVVACNTASAIALE 80 (262)
T ss_pred EEEEE-ECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH
T ss_conf 37898-76863578999999857897368861423496688855789999999999973414641556511156698899
Q ss_pred HHHHHH----------HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 444445----------677788886426798899970989999998766540
Q gi|254780684|r 231 RKMAPL----------TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATN 272 (438)
Q Consensus 231 r~~a~~----------~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~ 272 (438)
..+--+ .+-+++.--.++.++|||+-...|=--.|++|.=..
T Consensus 81 ~lq~~f~~PvvGVi~P~~~aa~~~~~~~~~~vlviaT~~T~~s~~~~~~~~~ 132 (262)
T TIGR00067 81 DLQRNFDFPVVGVIEPAVKAAIRLVKNKRKRVLVIATNATIKSNAYHEAVKE 132 (262)
T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf 9987728987897666516888743401770588504467888899999986
No 452
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.39 E-value=0.94 Score=24.45 Aligned_cols=115 Identities=12% Similarity=0.100 Sum_probs=60.7
Q ss_pred CCCCCCCCCCEEEECCCC------EEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEE---ECCCCCC-CCCCCCCCCCH
Q ss_conf 485574678889972885------5524666886543077630478877755530121---1254333-00013311001
Q gi|254780684|r 76 GIGEEISLGDLVFHWGRF------RISPSACWCGRVINALGKPIDGDDSLGKGDLSME---IMSKVPP-AMNRQRVEKGF 145 (438)
Q Consensus 76 ~~~~gI~~G~~V~~~g~~------~i~vG~~lLGRViD~lG~PlDg~~~l~~~~~~~~---i~~~~p~-p~~R~~i~e~L 145 (438)
.+..++++|++|...--. ...-|..-+=+=.+.+|.-.||. .. +....| +...|.+ +++....-+|+
T Consensus 70 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~G~~~~C~~~~~~G~~~~Gg--~A-ey~~v~~~~~~~iP~~~~~e~aa~~ep~ 146 (347)
T PRK10309 70 SGVTDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGG--NA-EYIVVKRKNLFALPTDMPIEDGAFIEPI 146 (347)
T ss_pred CCCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC--CC-CEEEECHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99986999998998840688888233389866354555233688876--51-0478548986678720024566767667
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 112458752002235850375266788999999998740789838993124
Q gi|254780684|r 146 KTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVG 196 (438)
Q Consensus 146 ~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIG 196 (438)
.+++.+++.. ....|+++.|+|.-++|- ++.+++|...+..++..-.-
T Consensus 147 ~~~~~a~~~~-~~~~g~~vlV~GaG~vGl--~aiq~ak~~Ga~~V~~~d~~ 194 (347)
T PRK10309 147 TVGLHAFHLA-QGCEGKNVIIIGAGTIGL--LAIQCAVALGAKSVTAIDIN 194 (347)
T ss_pred HHHHHHHHHC-CCCCCCEEEEECCCCHHH--HHHHHHHHCCCCEEEEEECC
T ss_conf 7776777650-588898699989983899--99999998599769999289
No 453
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=90.38 E-value=1.4 Score=23.28 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=24.5
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 02235850375266788999999998740
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+|-..+=++.|+|-+.||||||+..+...
T Consensus 13 ~p~~~~p~IaivGrpNvGKSTL~N~L~g~ 41 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 99988978999869998889999998689
No 454
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=90.33 E-value=0.27 Score=28.46 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 03752667889999999987407
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|+.++|++|||||+|+.++..+.
T Consensus 1 KivvvG~~~vGKTSLi~r~~~~~ 23 (118)
T pfam08477 1 KVVVIGDKGSGKSSLLSQLVGGE 23 (118)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999998398
No 455
>PRK05480 uridine kinase; Provisional
Probab=90.30 E-value=0.42 Score=27.00 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 37526678899999999874078
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
+||-|+||+||||++..|.+.-.
T Consensus 9 IgIaG~SgSGKTT~a~~L~~~l~ 31 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989997789999999999808
No 456
>PRK08694 consensus
Probab=90.25 E-value=0.37 Score=27.41 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 01112458752002-2358503752667889999999987407
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
-+.||++.+|.++. +-.|+=+-|=|-+|.|||+|+-.|+.+.
T Consensus 200 Gi~TG~~~LD~~t~Gl~~G~LiVIaaRPsmGKTalalnia~~~ 242 (468)
T PRK08694 200 GVPTGFIDLDKKTSGLQPGDLIIVAGRPSMGKTAFSINIAEHV 242 (468)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 1557968898764488878479996178653789999999999
No 457
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=90.20 E-value=0.51 Score=26.42 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=31.1
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEE
Q ss_conf 200223585037526678899999999874078--9838993
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIIS 193 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~a 193 (438)
.=+.+.+|+-+.++|..|+|||||+..|+-... ...+.|.
T Consensus 22 vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~ 63 (237)
T COG0410 22 VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63 (237)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 105876898899989998888999999858987887069989
No 458
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=90.19 E-value=0.3 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 58503752667889999999987407
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.|+-.+|.|++|+|||||+..|....
T Consensus 21 ~~~itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred ECCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 08889999899999999999986304
No 459
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=90.16 E-value=0.28 Score=28.29 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0375266788999999998740
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|+.+.|++|||||+|+.+...+
T Consensus 2 KivllGd~gVGKTsli~r~~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999995995889999999978
No 460
>PRK07004 replicative DNA helicase; Provisional
Probab=90.14 E-value=0.58 Score=26.00 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 01112458752002-2358503752667889999999987407
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
-+.||++.+|-++- +-+|+=+-|=|-+|+|||.|+-.|+.+.
T Consensus 195 Gi~TGf~~LD~~t~Gl~~gdLiIIAARPsmGKTafAlniA~n~ 237 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYV 237 (460)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 3867938898652389877579997368764269999999999
No 461
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=90.14 E-value=1.4 Score=23.21 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 31100111245875200223585--03752667889999999987407898
Q gi|254780684|r 140 RVEKGFKTGIRVIDIFTPLCHGQ--RIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 140 ~i~e~L~TGIr~ID~l~pig~GQ--R~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
.+.+.+.+-.+--+.+-..+... .++++|++|+|||.|+..+++....-
T Consensus 253 ~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 253 ELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 999999999970887632589888369998899975899999987544982
No 462
>PRK07429 phosphoribulokinase; Provisional
Probab=90.13 E-value=0.49 Score=26.52 Aligned_cols=31 Identities=42% Similarity=0.457 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC-CEEEEE
Q ss_conf 3752667889999999987407898-389931
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFD-KVIISL 194 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~d-v~V~al 194 (438)
+||-||||+||||++..|.+.-..+ ++|+++
T Consensus 11 IGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~ 42 (331)
T PRK07429 11 IGVAGDSGCGKSTFLRRLADLFGEELVTVICL 42 (331)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99857887789999999999838887799947
No 463
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=90.04 E-value=0.5 Score=26.47 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=49.4
Q ss_pred HHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHH---HCCCCCEEEEECCCCCHHHHHHHHHH---HCCCCCCEEEEEEC
Q ss_conf 8752002-23585037526678899999999874---07898389931246522388999986---42775532898415
Q gi|254780684|r 151 VIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFAR---SDCFDKVIISLVGERGREVREFIEDY---LGDNLKKSVVVVAT 223 (438)
Q Consensus 151 ~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~---~~~~dv~V~alIGeR~rev~efi~~~---~~~~l~~tvvv~~t 223 (438)
.++.+.| -|+..++||-|.+|+|||||...+.+ ....-|-|+|.==-.....-.++-+- ........+.|=+.
T Consensus 38 ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~ 117 (325)
T PRK09435 38 LLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPS 117 (325)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99986301798259974279998688999999999996798589999789999888610103888876147998488406
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7788-034444445677788886426798899970
Q gi|254780684|r 224 SDES-PILRKMAPLTAVTIAEYFSSKGDNVLLILD 257 (438)
Q Consensus 224 ~d~~-~~~r~~a~~~a~~iAEyfr~~G~~Vll~~D 257 (438)
+..- .+---.+.+-++.+-| .-|+|++++=.
T Consensus 118 ~srg~lgg~~~~~~~~~~~~~---a~g~d~i~iET 149 (325)
T PRK09435 118 PSSGTLGGVARKTRETMLLCE---AAGFDVILVET 149 (325)
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HCCCCEEEEEE
T ss_conf 778886773354999999999---77999899970
No 464
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.00 E-value=0.49 Score=26.51 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 3000133110011124587520022358503752667889999999987407--89838993124652238899998642
Q gi|254780684|r 134 PAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD--CFDKVIISLVGERGREVREFIEDYLG 211 (438)
Q Consensus 134 ~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~--~~dv~V~alIGeR~rev~efi~~~~~ 211 (438)
+..-|+.+...+..=-.-|+.|-+-. +-+.++|+.|+|||-|+..||+.. ....|+|. .+.++++.+..
T Consensus 158 ~~sprenm~~i~~~~~~fi~~F~~~~--~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~-------ta~~L~~~l~~ 228 (330)
T PRK06835 158 PISPRENMENILEKCLNFIKNFDKNN--ENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYR-------TSDELIENLRE 228 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-------EHHHHHHHHHH
T ss_conf 98989999999999999987247888--8669889999988999999999999879949996-------29999999999
No 465
>KOG3062 consensus
Probab=89.98 E-value=1.5 Score=23.05 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHHHHCCCCEEEEEECHH-----HH---H--H----------------HHHHHHHHCCCCCCCCCCCHHHHHHCCHHH
Q ss_conf 88886426798899970989-----99---9--9----------------987665404778432366324554200444
Q gi|254780684|r 241 IAEYFSSKGDNVLLILDSIT-----RF---A--H----------------SIREIATNSGELPVARGYPTSVFSELPRLL 294 (438)
Q Consensus 241 iAEyfr~~G~~Vll~~Ds~t-----r~---a--~----------------A~reis~~~ge~P~~~gyp~~~~~~~~~l~ 294 (438)
.++-=|+-.++-++++||+. || + + --||-. ...+-|+..||++.+|-.|-+-|
T Consensus 64 ~S~v~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~N-s~~~~p~e~gy~~e~le~L~~Ry 142 (281)
T KOG3062 64 RSAVDRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWN-SEREDPGEDGYDDELLEALVQRY 142 (281)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEHHCCCEEEEEEEECCCHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998533568689981444112202036551010544689998527989998751-46899888999979999999986
Q ss_pred HHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 443113678852355433342167642027899986126
Q gi|254780684|r 295 ERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILD 333 (438)
Q Consensus 295 ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~D 333 (438)
|--- ..++=-| -+++++. |+.+.||++-.....+
T Consensus 143 EeP~-s~NRWDs--PLf~ll~--~~~~~~~~~I~~al~~ 176 (281)
T KOG3062 143 EEPN-SRNRWDS--PLFTLLP--DVITLPIDDILKALFE 176 (281)
T ss_pred HCCC-CCCCCCC--CCEEEEC--CCCCCCHHHHHHHHHC
T ss_conf 1877-5566668--6157724--6577868999999851
No 466
>PRK06321 replicative DNA helicase; Provisional
Probab=89.95 E-value=0.59 Score=25.94 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHC----CCCCEEEEE
Q ss_conf 001112458752002-2358503752667889999999987407----898389931
Q gi|254780684|r 143 KGFKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARSD----CFDKVIISL 194 (438)
Q Consensus 143 e~L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~~----~~dv~V~al 194 (438)
.-+.||++-+|-++. +-+|+=+-|=|-+|.|||.|+-.|+.+. +.-|.+|.+
T Consensus 207 tGipTGf~~LD~lt~Gl~~GdliviaaRPsmGKTalalnia~~~a~~~~~~v~~fSL 263 (472)
T PRK06321 207 SGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSL 263 (472)
T ss_pred CCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 422568488999855988675799853899977999999999999856994699757
No 467
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=89.94 E-value=0.32 Score=27.91 Aligned_cols=24 Identities=13% Similarity=0.459 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 503752667889999999987407
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
.|+.++|++|||||+|+..+..+.
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~ 24 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDT 24 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 979999979978999999993199
No 468
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=89.93 E-value=0.41 Score=27.06 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=84.6
Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECC-CCCHHHHHHHH
Q ss_conf 22358503752667889999999987407898389931246522388999986427755328984157-78803444444
Q gi|254780684|r 157 PLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATS-DESPILRKMAP 235 (438)
Q Consensus 157 pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~-d~~~~~r~~a~ 235 (438)
-|..++-+-|+||-|+||||++.+|.+.-..+-=++ .+-+..|-.+...=.+.=++++.. ++... -.++
T Consensus 154 Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ER~i--------TIED~~E~~~~hhpN~V~L~ysk~v~~g~~--~vt~ 223 (328)
T TIGR02788 154 AIASRKNIIISGGTGSGKTTFLKALVKEIPKDERLI--------TIEDTRELFLPHHPNKVHLFYSKGVGQGSA--KVTP 223 (328)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEE--------EEEEEECCCCCCCCCEEEEEECCCCCCCCC--CCCH
T ss_conf 987389199990689718999999973276225278--------885201147888986456553464234435--6898
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEE--
Q ss_conf 567778888642679889997098999999876654047784323663245542004444431136788523554333--
Q gi|254780684|r 236 LTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISV-- 313 (438)
Q Consensus 236 ~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v-- 313 (438)
...+.-+=..| -==..+||+=|+++|- |. |+- ..+-+||||.+=+=
T Consensus 224 ~~Ll~scLRMr---------------------PDRI~LgELRG~Eaf~---F~-------~~~-nsGHpGsiTT~HA~s~ 271 (328)
T TIGR02788 224 KDLLESCLRMR---------------------PDRILLGELRGDEAFD---FI-------RAV-NSGHPGSITTVHAGSP 271 (328)
T ss_pred HHHHHHHHCCC---------------------CCHHHHHHHCCHHHHH---HH-------HHH-CCCCCCCEEEEEECCH
T ss_conf 99999971177---------------------4057674303325788---88-------752-0598860567871898
Q ss_pred -------------EECCCCC-CCHHHHHHHHHCCCEEEEEH
Q ss_conf -------------4216764-20278999861260898704
Q gi|254780684|r 314 -------------LVDGDNH-NDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 314 -------------~~~~dd~-~~pi~~~~~~i~DG~i~L~r 340 (438)
...|-++ .|.|-..++.+.|==|++.+
T Consensus 272 ~~Af~qla~l~k~s~~g~gL~~~~I~~~~~~~iDiVvq~~~ 312 (328)
T TIGR02788 272 EEAFEQLALLVKESQAGLGLDYADIVKLLREVIDIVVQLER 312 (328)
T ss_pred HHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999987202543588889999774211447899631
No 469
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=89.93 E-value=0.32 Score=27.89 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=24.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 3752667889999999987407898389931246
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGE 197 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGe 197 (438)
+.+.|++|+|||+++.++++.-...-+++..+.+
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~ 35 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSNRPVFYVQLTR 35 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCC
T ss_conf 8999899756999999999980798311121465
No 470
>KOG0735 consensus
Probab=89.91 E-value=0.7 Score=25.38 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 375266788999999998740789
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
++++|++|+|||-|++.++.+.+-
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~~ 727 (952)
T KOG0735 704 ILLYGPPGCGKTLLASAIASNSNL 727 (952)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCE
T ss_conf 588779998578888888853780
No 471
>KOG0651 consensus
Probab=89.84 E-value=0.75 Score=25.17 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=30.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEE-------EEECCCCCHHHHHHHHH
Q ss_conf 3752667889999999987407898389-------93124652238899998
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVI-------ISLVGERGREVREFIED 208 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V-------~alIGeR~rev~efi~~ 208 (438)
++|+|++|+|||-+...++.+-.+.-+. =.-|||.+|-++|....
T Consensus 169 ~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~y 220 (388)
T KOG0651 169 LLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRY 220 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 6876799986459999999865985477447666330026578899999977
No 472
>PRK10416 cell division protein FtsY; Provisional
Probab=89.84 E-value=1.5 Score=22.98 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=40.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEEC-CCCCHHHHHHHHHHHH
Q ss_conf 03752667889999999987407-8983899312465223889999864277-5532898415-7788034444445677
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSD-CFDKVIISLVGERGREVREFIEDYLGDN-LKKSVVVVAT-SDESPILRKMAPLTAV 239 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~-~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tvvv~~t-~d~~~~~r~~a~~~a~ 239 (438)
-+++.|-.|+||||-++-++++- +....|....|---|-.+ ++.+.--+ ....-+|... ..+|+. .+|-|+
T Consensus 297 VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAA--ieQL~~w~~r~~v~vi~~~~g~Dpa~----V~~dai 370 (499)
T PRK10416 297 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAA--VEQLQVWGQRNNIPVIAQHTGADSAS----VIFDAI 370 (499)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH--HHHHHHHHCCCCCEEEECCCCCCHHH----HHHHHH
T ss_conf 999974787878989999999999779953788406675689--99999984245736983689999799----999999
Q ss_pred HHHHHHHHCCCCEEEEEEC
Q ss_conf 7888864267988999709
Q gi|254780684|r 240 TIAEYFSSKGDNVLLILDS 258 (438)
Q Consensus 240 ~iAEyfr~~G~~Vll~~Ds 258 (438)
++.+.+|.|||++ |.
T Consensus 371 ---~~a~~~~~Dvvii-DT 385 (499)
T PRK10416 371 ---QAAKARNVDVLIA-DT 385 (499)
T ss_pred ---HHHHHCCCCEEEE-EC
T ss_conf ---9999729998998-57
No 473
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=89.78 E-value=0.3 Score=28.09 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=60.6
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE-C-CCCCHHH---
Q ss_conf 0223585037526678899999999874078983899312465223889999864277553289841-5-7788034---
Q gi|254780684|r 156 TPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVA-T-SDESPIL--- 230 (438)
Q Consensus 156 ~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~-t-~d~~~~~--- 230 (438)
+++-+|-=-.|.|+-|.|||||+..|+-+-+.-| .=+-|==+|..+.++ .-+..+|.=+|.| + .-|=|+.
T Consensus 21 L~v~~GE~HAiMGPNGsGKSTL~~~iaGhp~y~v-t~G~I~f~G~Dll~l----~~~ERAR~GlFLaFQ~P~EIPGV~~~ 95 (248)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGHPKYEV-TSGTILFKGQDLLEL----EPDERARAGLFLAFQYPEEIPGVSNL 95 (248)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEE-EEEEEEECCEECCCC----CHHHHHCCCCEECCCCCCCCCCCCHH
T ss_conf 6216851799868899847888777617993378-420898776520018----96556405651015888556885778
Q ss_pred -HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf -44444567778888642679889997098999999876654047
Q gi|254780684|r 231 -RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSG 274 (438)
Q Consensus 231 -r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~g 274 (438)
=.++|+.|+.-| +|+..| |+..|..-+++.-.+++
T Consensus 96 ~FlR~A~NA~R~~-----~G~~~l----~~~~F~~~l~~~~~~l~ 131 (248)
T TIGR01978 96 EFLRSALNARREA-----RGEEPL----DLLDFEKLLKEKLALLD 131 (248)
T ss_pred HHHHHHHHHHHHH-----CCCCCC----CHHHHHHHHHHHHHHHC
T ss_conf 8999999999986-----389987----98899999999999856
No 474
>KOG0061 consensus
Probab=89.76 E-value=0.39 Score=27.26 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=22.9
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 235850375266788999999998740789
Q gi|254780684|r 158 LCHGQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 158 ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
.--|+=+.|.|+||.|||||+..++.....
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~ 82 (613)
T KOG0061 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNG 82 (613)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 867868999768887799999999577887
No 475
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=89.75 E-value=0.59 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 375266788999999998740
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+=|.|+-|.|||.||.+.-..
T Consensus 64 lYl~G~VGrGKTmLMDlFy~~ 84 (361)
T pfam03969 64 LYLWGGVGRGKTHLMDSFFES 84 (361)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898899888699999999986
No 476
>KOG2383 consensus
Probab=89.75 E-value=0.87 Score=24.71 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHH
Q ss_conf 277553289841577880344444456777888864-2679889997098999
Q gi|254780684|r 211 GDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFS-SKGDNVLLILDSITRF 262 (438)
Q Consensus 211 ~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr-~~G~~Vll~~Ds~tr~ 262 (438)
..=+++-||+++|||.+|-.-|.-..--...--+-. =+-+-+++-+||=.-|
T Consensus 218 ~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDY 270 (467)
T KOG2383 218 EHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDY 270 (467)
T ss_pred HHHHHCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCH
T ss_conf 99973875999827898588862430255300689999876368865885335
No 477
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=89.74 E-value=0.48 Score=26.61 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 585037526678899999999874078--9838993124652238899998642
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDC--FDKVIISLVGERGREVREFIEDYLG 211 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~--~dv~V~alIGeR~rev~efi~~~~~ 211 (438)
++--+.++|++|+|||.|+..|++... ...|.|. .+.+|+.++..
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~-------~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI-------TAPDLLSKLKA 150 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-------EHHHHHHHHHH
T ss_conf 588289989999879999999999999839849998-------85999999999
No 478
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=89.73 E-value=0.34 Score=27.70 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 03752667889999999987407
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|+.++|++|||||+|+....++.
T Consensus 5 KivlvGd~~VGKTsli~r~~~~~ 27 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNA 27 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999989999999997299
No 479
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=89.67 E-value=0.32 Score=27.93 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 037526678899999999874078983899312465
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGER 198 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR 198 (438)
|+.++|++|+||+|.+..|+++-. +++..+|+-
T Consensus 1 ri~l~G~PGsGKgTqa~~La~~~~---~~~is~gdl 33 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG---LPHISTGDL 33 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CEEECHHHH
T ss_conf 989989999987999999999979---846768899
No 480
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=89.65 E-value=0.34 Score=27.66 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 503752667889999999987407
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
+|+.+.|++|||||+|+...+++.
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~ 24 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY 24 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989999979976999999997099
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.61 E-value=0.53 Score=26.30 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 850375266788999999998740789
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLLSMFARSDCF 187 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll~~i~~~~~~ 187 (438)
|+=+-|-|+||+|||||+..+.+....
T Consensus 2 G~LivvsgPSGaGK~Tli~~l~~~~~~ 28 (184)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (184)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 709999899869999999999844899
No 482
>PTZ00301 uridine kinase; Provisional
Probab=89.55 E-value=0.32 Score=27.88 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 37526678899999999874
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~ 183 (438)
+||-||||+||||+...|.+
T Consensus 6 IgIaGgSgSGKTT~a~~i~~ 25 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99968876789999999999
No 483
>PRK05636 replicative DNA helicase; Provisional
Probab=89.53 E-value=0.59 Score=25.92 Aligned_cols=41 Identities=41% Similarity=0.574 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEE-CCCCCCHHHHHHHHHHHC
Q ss_conf 01112458752002-2358503752-667889999999987407
Q gi|254780684|r 144 GFKTGIRVIDIFTP-LCHGQRIGVF-AGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 144 ~L~TGIr~ID~l~p-ig~GQR~gIf-g~~GvGKt~Ll~~i~~~~ 185 (438)
-+.||++.+|-++- +-.|+ +-|+ |-++.|||+|+-.|+++.
T Consensus 249 Gi~TGf~~LD~~t~Gl~~G~-LiIiAARPsmGKTalAlnia~n~ 291 (507)
T PRK05636 249 GIPTGFKDLDDLTNGLRGGQ-MIIVAARPGVGKSTIALDFMRSA 291 (507)
T ss_pred EEECCCHHHHHHHCCCCCCC-EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 56588088997550888356-79997378786689999999999
No 484
>PRK08181 transposase; Validated
Probab=89.52 E-value=0.33 Score=27.81 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=63.0
Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHC-C-CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 22358503752667889999999987407-8-983899312465223889999864277553289841577880344444
Q gi|254780684|r 157 PLCHGQRIGVFAGSGIGKSTLLSMFARSD-C-FDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMA 234 (438)
Q Consensus 157 pig~GQR~gIfg~~GvGKt~Ll~~i~~~~-~-~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a 234 (438)
=|-++|-+.++|++|+|||.|+..+...+ . +-.+.|. .+.++++++...
T Consensus 102 fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~-------~~~~L~~~L~~a---------------------- 152 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-------RTTDLVQKLQVA---------------------- 152 (269)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE-------EHHHHHHHHHHH----------------------
T ss_conf 886487089989999878899999999999879939997-------899999999997----------------------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 45677788886426798899970989999998766540477843236632455420044444311367885235543334
Q gi|254780684|r 235 PLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVL 314 (438)
Q Consensus 235 ~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~ 314 (438)
...-+....++.-.+--|||+|++- | .|-.+.=-..+|..++..||| +|+ .| |--
T Consensus 153 -~~~~~~~~~~~~l~~~dLLIiDe~G-----~---------~~~~~~~~~~lf~lI~~Rye~--------~S~-II-TSn 207 (269)
T PRK08181 153 -RRELQLESAIAKLDKFDLLILDDLA-----Y---------VTKDQAETSVLFELISARYER--------RSI-LI-TAN 207 (269)
T ss_pred -HHCCCHHHHHHHHHCCCEEEEHHCC-----C---------CCCCHHHHHHHHHHHHHHHCC--------CCE-EE-ECC
T ss_conf -7558399999997444601220105-----6---------679989999999999998578--------888-99-889
Q ss_pred ECCCCCCCHHHHHHH
Q ss_conf 216764202789998
Q gi|254780684|r 315 VDGDNHNDPIADSVR 329 (438)
Q Consensus 315 ~~~dd~~~pi~~~~~ 329 (438)
.+-+++.+.++|.+.
T Consensus 208 ~~~~~W~~~f~D~~l 222 (269)
T PRK08181 208 QPFGEWNRVFPDPAM 222 (269)
T ss_pred CCHHHHHHHCCCHHH
T ss_conf 997788775386889
No 485
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.49 E-value=1.6 Score=22.79 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 3752667889999999987407
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
+.+-|++|+|||+++..+++.-
T Consensus 40 lLf~GppG~GKTt~a~~la~~l 61 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALAREL 61 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9888959988999999999997
No 486
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=89.46 E-value=0.34 Score=27.65 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 03752667889999999987407
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|+.++|++|||||+|+.....+.
T Consensus 6 KivvvGd~~VGKTsli~r~~~~~ 28 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988899999996195
No 487
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.46 E-value=0.38 Score=27.36 Aligned_cols=37 Identities=35% Similarity=0.407 Sum_probs=30.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 5200223585037526678899999999874078983
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDK 189 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv 189 (438)
|.-+.+-+|+=..|+|+.|.|||||++|++|--..|.
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~ 55 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS 55 (252)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 6145415886368888998648889999998526678
No 488
>PRK00454 engB GTPase EngB; Reviewed
Probab=89.38 E-value=1.6 Score=22.74 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1112458752002235850375266788999999998740
Q gi|254780684|r 145 FKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 145 L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
|-.+.-.++-+ |--.+-++.|+|-+.+|||||+..+..+
T Consensus 9 f~~~~~~~~~~-p~~~~p~VaivGrpNvGKSTL~N~L~g~ 47 (196)
T PRK00454 9 FIISAPKIKQL-PPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred EEEECCCHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 99925897789-9988968999848988899999998689
No 489
>KOG0927 consensus
Probab=89.37 E-value=0.27 Score=28.46 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=29.3
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 752002235850375266788999999998740
Q gi|254780684|r 152 IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 152 ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
-|..+-+-+|||-||+|.-|+||||+|..|...
T Consensus 92 kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927 92 KDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 410478627864899767997376899887537
No 490
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=89.33 E-value=1.6 Score=22.72 Aligned_cols=21 Identities=29% Similarity=0.653 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 375266788999999998740
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
+.+.|++|||||||+..+.++
T Consensus 42 VavvGPpgvGKtTLiksLvk~ 62 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999898997788999999999
No 491
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=89.26 E-value=0.35 Score=27.62 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 03752667889999999987407
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|+.|.|++|||||+|+..+..+.
T Consensus 1 Ki~ivG~~~vGKTsli~r~~~~~ 23 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT 23 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999969967999999996195
No 492
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=89.20 E-value=1.2 Score=23.69 Aligned_cols=89 Identities=21% Similarity=0.205 Sum_probs=45.2
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCC-EEEEEC------CCCCHH------HHHHHHHHHCCC-CCCEEEEEECCCCCHHH
Q ss_conf 7526678899999999874078983-899312------465223------889999864277-55328984157788034
Q gi|254780684|r 165 GVFAGSGIGKSTLLSMFARSDCFDK-VIISLV------GERGRE------VREFIEDYLGDN-LKKSVVVVATSDESPIL 230 (438)
Q Consensus 165 gIfg~~GvGKt~Ll~~i~~~~~~dv-~V~alI------GeR~re------v~efi~~~~~~~-l~~tvvv~~t~d~~~~~ 230 (438)
-+.|+||+||++|...+.+...... .++.-. ||.-.+ -.+|-+...... +.+.
T Consensus 6 il~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~~~i~~~~flE~~------------- 72 (184)
T smart00072 6 VLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWG------------- 72 (184)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHHH-------------
T ss_conf 9999999999999999986396450577876727998899999636997179999998727417888-------------
Q ss_pred HHHHHHHHHHHHHHH--HHCCCCEEEEEECHHHHHHHHHH
Q ss_conf 444445677788886--42679889997098999999876
Q gi|254780684|r 231 RKMAPLTAVTIAEYF--SSKGDNVLLILDSITRFAHSIRE 268 (438)
Q Consensus 231 r~~a~~~a~~iAEyf--r~~G~~Vll~~Ds~tr~a~A~re 268 (438)
.+..-+.|+...+-- .++|++|++-+| ..-+..++.
T Consensus 73 ~~~g~~YGt~~~~I~~~~~~g~~~ildi~--~~g~~~l~~ 110 (184)
T smart00072 73 EYSGNYYGTSKETIRQVAEQGKHCLLDID--PQGVKQLRK 110 (184)
T ss_pred HHCCCCCCCHHHHHHHHHCCCCEEEEEEC--HHHHHHHHH
T ss_conf 74787754106789998726986999962--999999998
No 493
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=89.20 E-value=0.37 Score=27.43 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 03752667889999999987407
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
|+.++|++|||||+|+.....+.
T Consensus 2 Ki~llGd~~VGKTsli~r~~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999966999999996299
No 494
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=89.17 E-value=1.7 Score=22.63 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=56.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC-HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 0375266788999999998740789838993124652-238899998642775532898415778803444444567778
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERG-REVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTI 241 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~-rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~i 241 (438)
.+.|.||+-+|||..+-.++..+...+ .|.+-|.-. .|.++=|..+...--+. ..+...-..+
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~~~~v-~YvAT~~a~D~Em~~RI~~Hr~rRp~~---------------W~tvE~~~~l 65 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGESGGQV-LYVATGRAFDDEMQERIAHHRARRPEH---------------WRTVEAPLDL 65 (175)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHCCCCC---------------CEEEECCCCH
T ss_conf 089856866774189999998518964-999806778878999999998568876---------------5688644438
Q ss_pred HHHHHHC-CCCEEEEEECHHHHHHHH
Q ss_conf 8886426-798899970989999998
Q gi|254780684|r 242 AEYFSSK-GDNVLLILDSITRFAHSI 266 (438)
Q Consensus 242 AEyfr~~-G~~Vll~~Ds~tr~a~A~ 266 (438)
|+.+..- -.+-.+++|.+|.|-..+
T Consensus 66 ~~~L~~~~~~~~~VLvDcLt~wvtNl 91 (175)
T COG2087 66 ATLLEALIEPGDVVLVDCLTLWVTNL 91 (175)
T ss_pred HHHHHHCCCCCCEEEEECHHHHHHHH
T ss_conf 99987444679879997588999998
No 495
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=89.15 E-value=1.6 Score=22.71 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 35850375266788999999998740789838993124652238899998642775532898415778803444444567
Q gi|254780684|r 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
-|=-|+.|+|-.++|||||+..+..+.... +.--+|-...+ +.-... ...+.-.+. ..+++.
T Consensus 17 ~k~~kIlilGld~aGKTTil~~l~~~~~~~--~~PT~Gfn~e~-------i~~~~~--~~~~wDvgG---~~~~R~---- 78 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ--HVPTLHPTSEE-------LTIGNI--KFKTFDLGG---HEQARR---- 78 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCE--ECCCCCCCEEE-------EEECCE--EEEEEECCC---CCCCCC----
T ss_conf 770489999069998899999980799531--52655874599-------998999--999998999---845554----
Q ss_pred HHHHHHHHHCCCCEEEEEEC--HHHHHHHHHHHHHHCCC
Q ss_conf 77888864267988999709--89999998766540477
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDS--ITRFAHSIREIATNSGE 275 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds--~tr~a~A~reis~~~ge 275 (438)
--..||.+ -.-+++|+|| ..|+.+|..|+.-.+.+
T Consensus 79 -lW~~Y~~~-~~~iIfVVDssD~~r~~eak~~L~~lL~~ 115 (190)
T cd00879 79 -LWKDYFPE-VDGIVFLVDAADPERFQESKEELDSLLSD 115 (190)
T ss_pred -CHHHHHHC-CCEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf -38888431-13799999776778999999999999855
No 496
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=89.14 E-value=0.81 Score=24.92 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=21.0
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 23585037526678899999999874078
Q gi|254780684|r 158 LCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 158 ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
+-|| ++++|++|+|||-|+..+|..+.
T Consensus 184 ~PkG--vLL~GPPGtGKTlLAkAvAgEa~ 210 (644)
T PRK10733 184 IPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCC--EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9985--17779899877899999864559
No 497
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=89.14 E-value=0.32 Score=27.88 Aligned_cols=175 Identities=17% Similarity=0.266 Sum_probs=88.1
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHH----HHHC----C--CCCEEEEECCCCCHHHHHHHHHHHC----CC--CCCEE
Q ss_conf 002235850375266788999999998----7407----8--9838993124652238899998642----77--55328
Q gi|254780684|r 155 FTPLCHGQRIGVFAGSGIGKSTLLSMF----ARSD----C--FDKVIISLVGERGREVREFIEDYLG----DN--LKKSV 218 (438)
Q Consensus 155 l~pig~GQR~gIfg~~GvGKt~Ll~~i----~~~~----~--~dv~V~alIGeR~rev~efi~~~~~----~~--l~~tv 218 (438)
+...-++.=..|-||+||||||+...| .+++ + .-+.+.|=-|.=..-.+|-+..... ++ ++..+
T Consensus 236 ~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~ 315 (753)
T TIGR01447 236 VALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDL 315 (753)
T ss_pred HHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99986087689987988977899999999999989864997404788668447999999999988632234236658798
Q ss_pred EEEECCCCCHHHHHHHHHH-HHHHHHHHHH-C----CCCEEEEEE-----CH---HHHHHHHHHHH----------HHCC
Q ss_conf 9841577880344444456-7778888642-6----798899970-----98---99999987665----------4047
Q gi|254780684|r 219 VVVATSDESPILRKMAPLT-AVTIAEYFSS-K----GDNVLLILD-----SI---TRFAHSIREIA----------TNSG 274 (438)
Q Consensus 219 vv~~t~d~~~~~r~~a~~~-a~~iAEyfr~-~----G~~Vll~~D-----s~---tr~a~A~reis----------~~~g 274 (438)
+..-.+....+-|++.... . -+.||+ . -.||| |+| |+ -+..+|.+.-. .++|
T Consensus 316 ~~~~~~~~~TiHrLLG~~~I~---~~~fr~h~~N~L~~DVL-vvDEaSMVdl~lm~kL~~A~~~~~k~~KLy~~~LIllG 391 (753)
T TIGR01447 316 IAALPSEATTIHRLLGIKPID---TKRFRHHERNPLPLDVL-VVDEASMVDLPLMAKLLKALPPNTKDKKLYADRLILLG 391 (753)
T ss_pred HCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCEE-EECCCHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCEEC
T ss_conf 548720456888861661478---76776777788985527-87060022679999999722630013201010200122
Q ss_pred ---CCCCCCCCCHHHHHHCCHHHHHHHCC-CCCCC-----CEEEEEEEEECCCCCCCHHHHHHHHHCCCE
Q ss_conf ---78432366324554200444443113-67885-----235543334216764202789998612608
Q gi|254780684|r 275 ---ELPVARGYPTSVFSELPRLLERIGPS-EKEKG-----NITAVISVLVDGDNHNDPIADSVRSILDGH 335 (438)
Q Consensus 275 ---e~P~~~gyp~~~~~~~~~l~ERag~~-~~~~G-----SiT~~~~v~~~~dd~~~pi~~~~~~i~DG~ 335 (438)
..|+-++ |+|...+-.+.+.+-.. ....+ -.+.+..+.-.+.+..+|+.|++.-.-..|
T Consensus 392 D~nQL~svea--G~Vl~~l~~~~~~g~~~y~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~Sh 459 (753)
T TIGR01447 392 DKNQLPSVEA--GAVLGDLCELANEGESLYAAEKSALLAELLGEVAAVKKIASKTRNPLSDNVCMLKTSH 459 (753)
T ss_pred CCCCCCCCCH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 6788887543--5557999999753750024548889998547889999853121152354476530122
No 498
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=89.12 E-value=0.66 Score=25.60 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=51.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC-----CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 50375266788999999998740789-----8389931246522388999986427755328984157788034444445
Q gi|254780684|r 162 QRIGVFAGSGIGKSTLLSMFARSDCF-----DKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPL 236 (438)
Q Consensus 162 QR~gIfg~~GvGKt~Ll~~i~~~~~~-----dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~ 236 (438)
.-++++|+.|+|||-|+..+|+.-+. |.-.|-=.|=-|++|...+.+++..+ |-.
T Consensus 110 sNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lTEaGYVGeDVE~ii~~Llq~A-----------d~d--------- 169 (411)
T PRK05342 110 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAA-----------DYD--------- 169 (411)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEECCCCCCCCCHHHHHHHHHHHC-----------CCC---------
T ss_conf 538998999977889999999986999899861200126745607999999999982-----------888---------
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 67778888642679889997098999999
Q gi|254780684|r 237 TAVTIAEYFSSKGDNVLLILDSITRFAHS 265 (438)
Q Consensus 237 ~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A 265 (438)
..-|| +=.+++|-+-+.|+.
T Consensus 170 --ve~Ae-------~GIV~IDEIDKIark 189 (411)
T PRK05342 170 --VEKAQ-------RGIVYIDEIDKIARK 189 (411)
T ss_pred --HHHHH-------CCEEEEEEHHHHHHC
T ss_conf --99883-------682888502345424
No 499
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=89.11 E-value=0.31 Score=28.02 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 85037526678899999999874078
Q gi|254780684|r 161 GQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 161 GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
||=-.+.|.||.||||||..+++-.+
T Consensus 853 G~lTALMG~SGAGKTTLLn~La~R~t 878 (1466)
T TIGR00956 853 GTLTALMGASGAGKTTLLNVLAERVT 878 (1466)
T ss_pred CEEEECCCCCCCCHHHHHHHHHCCCC
T ss_conf 85765157887635788864433043
No 500
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=89.11 E-value=0.58 Score=25.98 Aligned_cols=31 Identities=39% Similarity=0.509 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC-CCCEEEEE
Q ss_conf 37526678899999999874078-98389931
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDC-FDKVIISL 194 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~-~dv~V~al 194 (438)
+||=|+||+||||++..|...-. ..+.++.+
T Consensus 11 IgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~~ 42 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVEKVVVISL 42 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99867987788999999999828675247652
Done!