HHsearch alignment for GI: 254780684 and conserved domain: pfam00006
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=100.00 E-value=0 Score=546.51 Aligned_cols=211 Identities=58% Similarity=0.889 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECC
Q ss_conf 1245875200223585037526678899999999874078983-8993124652238899998642-7755328984157
Q gi|254780684|r 147 TGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDK-VIISLVGERGREVREFIEDYLG-DNLKKSVVVVATS 224 (438)
Q Consensus 147 TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv-~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~ 224 (438)
T Consensus 1 TGi~~ID~l~pig~GQr~~I~g~~g~GKt~l~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~~~~~~~~~~t~vv~~~~ 80 (213)
T pfam00006 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKADVVEVYVLIGERGREVAEFIEELLGEGALKRTVVVAATS 80 (213)
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 98400020166457888778789999889999999985661893599813777799999999752137665069998468
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCC
Q ss_conf 78803444444567778888642679889997098999999876654047784323663245542004444431136788
Q gi|254780684|r 225 DESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEK 304 (438)
Q Consensus 225 d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~ 304 (438)
T Consensus 81 d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~~~~~~l~ERag~~~-~~ 159 (213)
T pfam00006 81 DEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVE-GG 159 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CC
T ss_conf 89878999999999999999997699689983780599999876500147998545639178888799998753468-88
Q ss_pred CCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf 523554333421676420278999861260898704277589713114456400
Q gi|254780684|r 305 GNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVS 358 (438)
Q Consensus 305 GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~~S~S 358 (438)
T Consensus 160 GSiT~l~tv~~~~~d~~dpi~~~~~~~~dg~ivLsr~la~~g~~PAId~~~S~S 213 (213)
T pfam00006 160 GSITALPTVLVPGGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213 (213)
T ss_pred CCEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCC
T ss_conf 634788899804888675156765211355999968999679999728755789