HHsearch alignment for GI: 254780684 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.27 E-value=0.028 Score=35.56 Aligned_cols=40 Identities=30% Similarity=0.391 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1112458752002-235850375266788999999998740
Q gi|254780684|r 145 FKTGIRVIDIFTP-LCHGQRIGVFAGSGIGKSTLLSMFARS 184 (438)
Q Consensus 145 L~TGIr~ID~l~p-ig~GQR~gIfg~~GvGKt~Ll~~i~~~ 184 (438)
T Consensus 2 IpTG~~~lD~~~gGl~~G~l~vi~g~pg~GKS~~~~~~a~~ 42 (186)
T pfam03796 2 LPTGFTDLDQLTGGLQKGDLIIIAARPSMGKTAFALNIARN 42 (186)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 38880778864269888817999967999879999999999