HHsearch alignment for GI: 254780684 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.54 E-value=0.0084 Score=39.40 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=43.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 37526678899999999874078983899312465223889999864277553289841577880344444456777888
Q gi|254780684|r 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAE 243 (438)
Q Consensus 164 ~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAE 243 (438)
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~--------------------------------~~i~------~~~di~~ 94 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGVNIRITSG--------------------------------PALE------KPGDLAA 94 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECC--------------------------------HHHH------HHHHHHH
T ss_conf 7887899998889999999840875376142--------------------------------6664------3899999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 864267988999709899999987665
Q gi|254780684|r 244 YFSSKGDNVLLILDSITRFAHSIREIA 270 (438)
Q Consensus 244 yfr~~G~~Vll~~Ds~tr~a~A~reis 270 (438)
T Consensus 95 ~l~~~~~~~ILFIDEIHr~nK~qqd~L 121 (234)
T pfam05496 95 ILTNLEPGDVLFIDEIHRLNRAVEEIL 121 (234)
T ss_pred HHHHCCCCCEEEEECHHHCCHHHHHHC
T ss_conf 998458998899966543587688744