>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.

Probab=98.24 E-value=2.2e-05 Score=58.23 Aligned_cols=189 Identities=17% Similarity=0.174 Sum_probs=101.5 Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHH-HHHC--CCCCEEEEECCCCCHHHHHHHHHHH-C-CC-CC- Q ss_conf 1112458752002--235850375266788999999998-7407--8983899312465223889999864-2-77-55- Q gi|254780684|r 145 FKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMF-ARSD--CFDKVIISLVGERGREVREFIEDYL-G-DN-LK- 215 (438) Q Consensus 145 L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i-~~~~--~~dv~V~alIGeR~rev~efi~~~~-~-~~-l~- 215 (438) T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~ 80 (231) T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEEE 80 (231) T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHC T ss_conf 98895568863169982996999985897259999999999999865896899981379999999999829985898646 Q ss_pred CEEEEEE-CCCCCHHH----HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHC Q ss_conf 3289841-57788034----444445677788886426798899970989999998766540477843236632455420 Q gi|254780684|r 216 KSVVVVA-TSDESPIL----RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSEL 290 (438) Q Consensus 216 ~tvvv~~-t~d~~~~~----r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~ 290 (438) T Consensus 81 g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~vVIDsit~l~~~~~~~---------------~~r~~l 144 (231) T pfam06745 81 GKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK-RVVIDSITTLFYLLKPA---------------MAREIL 144 (231) T ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHCCCHH---------------HHHHHH T ss_conf 96789862544222100112279999999999999971998-89997641640058899---------------999999 Q ss_pred CHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCC Q ss_conf 0444443113678852355433342167642027899986126089870427758971311445 Q gi|254780684|r 291 PRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPL 354 (438) Q Consensus 291 ~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~Paid~~ 354 (438) T Consensus 145 ~~l~~~l---k~~--g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~ 203 (231) T pfam06745 145 RRLKRVL---KKL--GVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEIEGELVRTIEIV 203 (231) T ss_pred HHHHHHH---HHC--CCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEEE T ss_conf 9999999---976--9919999821257776567630111003699999882499899999999

HHsearch alignment for GI: 254780684 and conserved domain: pfam06745