HHsearch alignment for GI: 254780684 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=90.68 E-value=1.1 Score=23.86 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=50.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 03752667889999999987407898389931246522388999986427755328984157788034444445677788
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
T Consensus 15 kililG~~~~GKTsil~~l~~~~~~~--~~pTvg~~~~-------~~~~~--~~~l~iwD~~Gq---e~~r~l-----~~ 75 (175)
T smart00177 15 RILMVGLDAAGKTTILYKLKLGESVT--TIPTIGFNVE-------TVTYK--NISFTVWDVGGQ---DKIRPL-----WR 75 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCEEE-------EEEEC--CEEEEEEECCCC---CCCCHH-----HH
T ss_conf 99999889999899999996599777--5797881079-------99989--899999989998---545536-----77
Q ss_pred HHHHHCCCCEEEEEECH--HHHHHHHHHHHHHCCCC
Q ss_conf 88642679889997098--99999987665404778
Q gi|254780684|r 243 EYFSSKGDNVLLILDSI--TRFAHSIREIATNSGEL 276 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds~--tr~a~A~reis~~~ge~ 276 (438)
T Consensus 76 ~Yy~~-a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~ 110 (175)
T smart00177 76 HYYTN-TQGLIFVVDSNDRDRIDEAREELHRMLNED 110 (175)
T ss_pred HHCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCH
T ss_conf 75577-618999986687789999999999996315