RPSBLAST alignment for GI: 254780684 and conserved domain: TIGR01039

>gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. Length = 461

 Score =  164 bits (418), Expect = 3e-41
 Identities = 101/302 (33%), Positives = 158/302 (52%), Gaps = 17/302 (5%)

Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKG-FKTGIRVIDIFTPLCHG 161
           GR+ N LG+PID    +   +     + +  P+   Q  +    +TGI+VID+  P   G
Sbjct: 86  GRIFNVLGEPIDEKGPIPAKERWP--IHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKG 143

Query: 162 QRIGVFAGSGIGKSTLLSMFARSDCFDKVIISL---VGERGRE----VREFIEDYLGDNL 214
            +IG+F G+G+GK+ L+     +   +    S+   VGER RE      E  E      +
Sbjct: 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKE---SGVI 200

Query: 215 KKSVVVVATSDESPILRKMAPLTAVTIAEYF-SSKGDNVLLILDSITRFAHSIREIATNS 273
            K+ +V    +E P  R    LT +T+AEYF   +G +VLL +D+I RF  +  E++   
Sbjct: 201 DKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALL 260

Query: 274 GELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILD 333
           G +P A GY  ++ +E+  L ERI  +  + G+IT+V +V V  D+  DP   +  + LD
Sbjct: 261 GRMPSAVGYQPTLATEMGELQERI--TSTKTGSITSVQAVYVPADDLTDPAPATTFAHLD 318

Query: 334 GHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEK-KLVSSLTHLIHRFEETRDIRLI 392
              VL+R +AE G YP VDPL S SRL D +   +E   +   +  ++ R++E +DI  I
Sbjct: 319 ATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAI 378

Query: 393 GG 394
            G
Sbjct: 379 LG 380