RPSBLAST alignment for GI: 254780684 and conserved domain: TIGR00962

>gnl|CDD|162134 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. Length = 501
 Score =  124 bits (314), Expect = 3e-29
 Identities = 88/285 (30%), Positives = 139/285 (48%), Gaps = 18/285 (6%)

Query: 103 GRVINALGKPIDGDDSLGKGDLSME----IMSKVPPAMNRQRVEKGFKTGIRVIDIFTPL 158
           GRV+NALG+PIDG     KG +  +    I    P  M R+ V +  +TGI+ ID   P+
Sbjct: 104 GRVVNALGQPIDG-----KGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPI 158

Query: 159 CHGQRIGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERG---REVREFIEDYLGDN 213
             GQR  +      GK+ +   ++  + D     +   +G++     +V   +E++    
Sbjct: 159 GRGQRELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEEH--GA 216

Query: 214 LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNS 273
           +  ++VV AT+ +S  L+ +AP T  T+AEYF   G + L+I D +++ A + R+I+   
Sbjct: 217 MDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLL 276

Query: 274 GELPVARGYPTSVFSELPRLLERIGP--SEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331
              P    YP  VF    RLLER      EK  G++TA+  +     + +  I  +V SI
Sbjct: 277 RRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVISI 336

Query: 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSL 376
            DG I L   L   G  P ++   SVSR+   A     K++  SL
Sbjct: 337 TDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSL 381