RPSBLAST alignment for GI: 254780684 and conserved domain: TIGR00962
>gnl|CDD|162134 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. Length = 501
Score = 124 bits (314), Expect = 3e-29
Identities = 88/285 (30%), Positives = 139/285 (48%), Gaps = 18/285 (6%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSME----IMSKVPPAMNRQRVEKGFKTGIRVIDIFTPL 158
GRV+NALG+PIDG KG + + I P M R+ V + +TGI+ ID P+
Sbjct: 104 GRVVNALGQPIDG-----KGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPI 158
Query: 159 CHGQRIGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERG---REVREFIEDYLGDN 213
GQR + GK+ + ++ + D + +G++ +V +E++
Sbjct: 159 GRGQRELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEEH--GA 216
Query: 214 LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNS 273
+ ++VV AT+ +S L+ +AP T T+AEYF G + L+I D +++ A + R+I+
Sbjct: 217 MDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLL 276
Query: 274 GELPVARGYPTSVFSELPRLLERIGP--SEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331
P YP VF RLLER EK G++TA+ + + + I +V SI
Sbjct: 277 RRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVISI 336
Query: 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSL 376
DG I L L G P ++ SVSR+ A K++ SL
Sbjct: 337 TDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSL 381