RPSBLAST alignment for GI: 254780684 and conserved domain: TIGR01026

>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. Length = 440
 Score =  370 bits (951), Expect = e-103
 Identities = 175/398 (43%), Positives = 246/398 (61%), Gaps = 13/398 (3%)

Query: 45  LGDFVVHQGKNSDN--LGQVIRINLDIVYICPVGIGEEISLGDLVFHWG---RFRISPSA 99
           +GD  + + + S+   + +V+  N + V++ P    E +  G  V   G     ++    
Sbjct: 44  VGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGL 103

Query: 100 CWCGRVINALGKPIDGD-DSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPL 158
              GRV++ LGKPIDG    L   +    I + + P + R  + +   TG+R ID    +
Sbjct: 104 L--GRVLDGLGKPIDGKGKFLDNVETEGLITAPINP-LKRAPIREILSTGVRSIDGLLTV 160

Query: 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKS 217
             GQRIG+FAGSG+GKSTLL M AR+   D  +I+L+GERGREVREFIE  LG + LK+S
Sbjct: 161 GKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRS 220

Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELP 277
           VVVVATSD+SP+LR      A  IAEYF  +G +VLL++DS+TRFA + REI   +GE P
Sbjct: 221 VVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPP 280

Query: 278 VARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIV 337
             +GY  SVFS LPRLLER G S   KG+ITA  +VLV+GD+ N+PIADSVR ILDGHIV
Sbjct: 281 ATKGYTPSVFSTLPRLLERAGAS--GKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIV 338

Query: 338 LNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRP 397
           L+R+LA+ G YP +D LAS+SRL     S + ++       L+ ++++  D+  IG Y+ 
Sbjct: 339 LSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQR 398

Query: 398 GVDLILDKAVHQVPIIYDFLKQSPSDLSS-EDVFQEIT 434
           G D  LD A+ + P +  FLKQ  ++  + E+  Q++ 
Sbjct: 399 GSDRELDFAIAKYPKLERFLKQGINEKVNFEESLQQLE 436