RPSBLAST alignment for GI: 254780684 and conserved domain: TIGR01026
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. Length = 440
Score = 370 bits (951), Expect = e-103
Identities = 175/398 (43%), Positives = 246/398 (61%), Gaps = 13/398 (3%)
Query: 45 LGDFVVHQGKNSDN--LGQVIRINLDIVYICPVGIGEEISLGDLVFHWG---RFRISPSA 99
+GD + + + S+ + +V+ N + V++ P E + G V G ++
Sbjct: 44 VGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGL 103
Query: 100 CWCGRVINALGKPIDGD-DSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPL 158
GRV++ LGKPIDG L + I + + P + R + + TG+R ID +
Sbjct: 104 L--GRVLDGLGKPIDGKGKFLDNVETEGLITAPINP-LKRAPIREILSTGVRSIDGLLTV 160
Query: 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKS 217
GQRIG+FAGSG+GKSTLL M AR+ D +I+L+GERGREVREFIE LG + LK+S
Sbjct: 161 GKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRS 220
Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELP 277
VVVVATSD+SP+LR A IAEYF +G +VLL++DS+TRFA + REI +GE P
Sbjct: 221 VVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPP 280
Query: 278 VARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIV 337
+GY SVFS LPRLLER G S KG+ITA +VLV+GD+ N+PIADSVR ILDGHIV
Sbjct: 281 ATKGYTPSVFSTLPRLLERAGAS--GKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIV 338
Query: 338 LNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRP 397
L+R+LA+ G YP +D LAS+SRL S + ++ L+ ++++ D+ IG Y+
Sbjct: 339 LSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQR 398
Query: 398 GVDLILDKAVHQVPIIYDFLKQSPSDLSS-EDVFQEIT 434
G D LD A+ + P + FLKQ ++ + E+ Q++
Sbjct: 399 GSDRELDFAIAKYPKLERFLKQGINEKVNFEESLQQLE 436