RPSBLAST alignment for GI: 254780684 and conserved domain: cd01128
>gnl|CDD|29994 cd01128, rho_factor, Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.. Length = 249
Score = 76.4 bits (188), Expect = 1e-14
Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS------DCFDKVIISLVGERGREVR 203
RV+D+F P+ GQR + A GK+TLL A + + + +I+ L+ ER EV
Sbjct: 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY--LIVLLIDERPEEVT 62
Query: 204 EFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263
+ G+ V+ +T DE P + A+ G +V+++LDSITR A
Sbjct: 63 DMQRSVKGE------VIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA 116
Query: 264 HSIREIATNSGEL------PVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD- 316
+ + SG++ A P F R +E E G++T + + LVD
Sbjct: 117 RAYNTVVPPSGKILSGGVDANALHKPKRFFGA-ARNIE-------EGGSLTIIATALVDT 168
Query: 317 GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSL 376
G +D I + + + +VL+R LAE +P +D L S +R + +E + + L
Sbjct: 169 GSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDPEELQRMWLL 228
Query: 377 THLIHRFEETRDIRLI 392
++ + + +
Sbjct: 229 RRVLSDMDPIEAMEFL 244