RPSBLAST alignment for GI: 254780684 and conserved domain: cd01132

>gnl|CDD|29998 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.. Length = 274
 Score =  117 bits (296), Expect = 4e-27
 Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 10/265 (3%)

Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
           GRV++ALG PIDG   + +      I SK P  + R+ V +  +TGI+ ID   P+  GQ
Sbjct: 12  GRVVDALGNPIDGKGPI-ETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQ 70

Query: 163 RIGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFI---EDYLGDNLKKS 217
           R  +      GK+ +   ++  +       I   +G++   V + +   E++    ++ +
Sbjct: 71  RELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEH--GAMEYT 128

Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELP 277
           +VV AT+ +   L+ +AP T   + EYF   G + L+I D +++ A + R+++      P
Sbjct: 129 IVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 188

Query: 278 VARGYPTSVFSELPRLLERIGPSEKEK--GNITAVISVLVDGDNHNDPIADSVRSILDGH 335
               YP  VF    RLLER      E   G++TA+  +     + +  I  +V SI DG 
Sbjct: 189 GREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDVSAYIPTNVISITDGQ 248

Query: 336 IVLNRSLAEEGRYPPVDPLASVSRL 360
           I L   L  +G  P ++   SVSR+
Sbjct: 249 IFLETDLFNKGIRPAINVGLSVSRV 273