RPSBLAST alignment for GI: 254780684 and conserved domain: cd01132
>gnl|CDD|29998 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.. Length = 274
Score = 117 bits (296), Expect = 4e-27
Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 10/265 (3%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
GRV++ALG PIDG + + I SK P + R+ V + +TGI+ ID P+ GQ
Sbjct: 12 GRVVDALGNPIDGKGPI-ETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQ 70
Query: 163 RIGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFI---EDYLGDNLKKS 217
R + GK+ + ++ + I +G++ V + + E++ ++ +
Sbjct: 71 RELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEH--GAMEYT 128
Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELP 277
+VV AT+ + L+ +AP T + EYF G + L+I D +++ A + R+++ P
Sbjct: 129 IVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 188
Query: 278 VARGYPTSVFSELPRLLERIGPSEKEK--GNITAVISVLVDGDNHNDPIADSVRSILDGH 335
YP VF RLLER E G++TA+ + + + I +V SI DG
Sbjct: 189 GREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDVSAYIPTNVISITDGQ 248
Query: 336 IVLNRSLAEEGRYPPVDPLASVSRL 360
I L L +G P ++ SVSR+
Sbjct: 249 IFLETDLFNKGIRPAINVGLSVSRV 273