RPSBLAST alignment for GI: 254780684 and conserved domain: cd01135
>gnl|CDD|30001 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.. Length = 276
Score = 159 bits (404), Expect = 1e-39
Identities = 90/269 (33%), Positives = 144/269 (53%), Gaps = 15/269 (5%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMN---RQRVEKGFKTGIRVIDIFTPLC 159
GR+ N GKPIDG + + ++I P +N R E+ +TGI ID L
Sbjct: 12 GRIFNGSGKPIDGGPEILAEEY-LDING---PPINPVARIYPEEMIQTGISAIDGMNTLV 67
Query: 160 HGQRIGVFAGSGIGKSTLLSMFAR------SDCFDKVIISLVGERGREVREFIEDY-LGD 212
GQ+I +F+GSG+ + L + AR + V+ + +G + R F +D+
Sbjct: 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETG 127
Query: 213 NLKKSVVVVATSDESPILRKMAPLTAVTIAEYFS-SKGDNVLLILDSITRFAHSIREIAT 271
L++ V+ + +++ I R + P A+T AEY + KG +VL+IL +T +A ++REI+
Sbjct: 128 ALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISA 187
Query: 272 NSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331
E+P RGYP ++++L + ER G E G+IT + + + D+ PI D I
Sbjct: 188 AREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYI 247
Query: 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRL 360
+G IVL+R L G YPP++ L S+SRL
Sbjct: 248 TEGQIVLDRQLHNRGIYPPINVLPSLSRL 276