RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780684|ref|YP_003065097.1| flagellum-specific ATP
synthase [Candidatus Liberibacter asiaticus str. psy62]
(438 letters)
>gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 789 bits (2039), Expect = 0.0
Identities = 265/440 (60%), Positives = 326/440 (74%), Gaps = 2/440 (0%)
Query: 1 MQKNLETLAQLAEDY--SKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDN 58
L LA L E Y + LV GG +S +T+ +Y V LS++V LGDFV + +
Sbjct: 3 PDNALARLAALVERYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTH 62
Query: 59 LGQVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDS 118
LG+V+R++ D V + P EI LGD VF G RI P W GRVINALG+PIDG
Sbjct: 63 LGEVVRVDPDGVTVKPFEPRIEIGLGDAVFRKGPLRIRPDPSWKGRVINALGEPIDGLGP 122
Query: 119 LGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178
L G M I + PPAM R RVE G +TG+RVIDIFTPLC GQRIG+FAGSG+GKSTLL
Sbjct: 123 LAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLL 182
Query: 179 SMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238
+M AR+D FD V+I+LVGERGREVREF+ED L DNLKK+V VVATSDESP++R++APLTA
Sbjct: 183 AMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242
Query: 239 VTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIG 298
IAEYF +G+NVLLI+DS+TRFAH+ RE+A +GE PVARGYP SVFSELPRLLER G
Sbjct: 243 TAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAG 302
Query: 299 PSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVS 358
P + G+IT + SVLVDGD+HNDP+ADS+R LDGHIVL+R++AE+GRYP VDPLAS+S
Sbjct: 303 PGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASIS 362
Query: 359 RLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLK 418
RLA AW+ +++KLVS L +I RFEETRD+RLIGGYR G D LD+AV VP IY+ L+
Sbjct: 363 RLARHAWTPEQRKLVSRLKSMIARFEETRDLRLIGGYRAGSDPDLDQAVDLVPRIYEALR 422
Query: 419 QSPSDLSSEDVFQEITKKLQ 438
QSP D S+D F ++ L+
Sbjct: 423 QSPGDPPSDDAFADLAAALK 442
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 574 bits (1482), Expect = e-164
Identities = 222/414 (53%), Positives = 288/414 (69%), Gaps = 4/414 (0%)
Query: 24 GYISSITSVYYTVTCLSQYVCLGDFV-VHQGKNSDNLGQVIRINLDIVYICPVGIGEEIS 82
G ++++T + V LS+ V LGD + L +V+ N D V + P E +
Sbjct: 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVG 60
Query: 83 LGDLVFHW-GRFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRV 141
LG VF G + P W GRVINALG+PIDG L +G+ + + PPAM+R RV
Sbjct: 61 LGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARV 120
Query: 142 EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGRE 201
+ TG+RVID F PLC GQR+G+FAGSG+GKSTLLSM AR+ D V+I+LVGERGRE
Sbjct: 121 GEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGRE 180
Query: 202 VREFIEDYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260
VREF+ED LG+ LK+SVVVVATSDESP++R+ A TA IAEYF +G +VLL++DS+T
Sbjct: 181 VREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVT 240
Query: 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320
RFA + REI +GE PVARGY SVFSELPRLLER GP + KG+IT + +VLVDGD+H
Sbjct: 241 RFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDH 300
Query: 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLI 380
N+P+AD+VR ILDGHIVL+R++AE GRYP ++ LASVSRLA + WS +E+KLV L L+
Sbjct: 301 NEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALL 360
Query: 381 HRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSD-LSSEDVFQEI 433
R+EET D+ +G YR G D LD+A+ VP IY+FL Q P + S +D F ++
Sbjct: 361 ARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIYEFLTQGPDEPTSLQDPFADL 414
>gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 411
Score = 522 bits (1346), Expect = e-149
Identities = 170/412 (41%), Positives = 246/412 (59%), Gaps = 6/412 (1%)
Query: 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDN-LGQVIRINLDIVYICPVGIGEEIS 82
G ++ + + L +G + + D +V+ D V + P+ E +
Sbjct: 1 GRVTRVVGLVLEAVGL--RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLR 58
Query: 83 LGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRV 141
G VF R+ GRVI+ LG+P+DG L G+ + + + + R +
Sbjct: 59 PGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGE-RVPLYAPPINPLKRAPI 117
Query: 142 EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGRE 201
++ G+R I+ + GQR+G+FAGSG+GKSTLL M AR D V++ L+GERGRE
Sbjct: 118 DEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGRE 177
Query: 202 VREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260
V+EFIED LG + L +SVVV AT+DESP++R A A IAEYF +G +VLL++DS+T
Sbjct: 178 VKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLT 237
Query: 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320
RFA + REIA GE P +GYP SVF++LP+L+ER G E+ KG+ITA +VLV+GD+
Sbjct: 238 RFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDDQ 297
Query: 321 NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLI 380
DPIAD+ R+ILDGHIVL+R LAE+G YP +D LAS+SR+ S + ++ L+
Sbjct: 298 QDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSPEHRQAARRFKQLL 357
Query: 381 HRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQE 432
R++E RD+ IG Y+ G D LD+A+ P I FL+Q + +S + E
Sbjct: 358 SRYQENRDLISIGAYQAGSDPELDQAIALYPRIEAFLQQGMRERASFEESLE 409
>gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 402 bits (1036), Expect = e-113
Identities = 160/334 (47%), Positives = 221/334 (66%), Gaps = 3/334 (0%)
Query: 95 ISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDI 154
+ PS W GRV+NALG+PIDG L +G + + + PPA +R RV + G+R ++
Sbjct: 92 VRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNT 151
Query: 155 FTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDN- 213
F C GQR+G+FAGSG+GKS LLSM AR+ D +I L+GERGREV+EF++D LG
Sbjct: 152 FLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQDDLGPEG 211
Query: 214 LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNS 273
L +SVVVVATSDE ++R+ A + IAEYF +G +VL ++DS+TRFA + REI ++
Sbjct: 212 LARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSA 271
Query: 274 GELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILD 333
GE P +GY +VF+ELPRLLER GP +G IT + +VLVDGD+HN+P+AD+VR ILD
Sbjct: 272 GEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFTVLVDGDDHNEPVADAVRGILD 331
Query: 334 GHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRD-IRLI 392
GHIV+ R++AE GRYP ++ L SVSR +E LV L+ + + + IRL
Sbjct: 332 GHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLMATYADMEELIRL- 390
Query: 393 GGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSS 426
G YR G D +D+A+ P + FL+Q + +S
Sbjct: 391 GAYRAGSDPEVDEAIRLNPALEAFLRQGKDEATS 424
>gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase.
Length = 422
Score = 385 bits (992), Expect = e-107
Identities = 175/399 (43%), Positives = 244/399 (61%), Gaps = 9/399 (2%)
Query: 43 VCLGDFV-VHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSAC 100
+G+ + + S L +V+ D + P+G IS G V GR I
Sbjct: 24 ARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVGEA 83
Query: 101 WCGRVINALGKPIDGDDSLGKGDLSME-IMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC 159
GRV++ G+P+DG L G++ + + PP M+RQ +++ TG+R ID
Sbjct: 84 LLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCG 143
Query: 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSV 218
GQRIG+FAG+G+GKSTLL M AR D +I+L+GERGREVREFIE +LG + K+SV
Sbjct: 144 EGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSV 203
Query: 219 VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPV 278
+VV+TSD + R A TA IAEYF +G VLL++DS+TRFA ++REI +GE P
Sbjct: 204 LVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPA 263
Query: 279 ARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVL 338
GYP SVFS LPRLLER G EK G+ITA+ +VLV+GD+ NDPIAD VRSILDGHIVL
Sbjct: 264 RGGYPPSVFSSLPRLLERAGNGEK--GSITALYTVLVEGDDMNDPIADEVRSILDGHIVL 321
Query: 339 NRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPG 398
+R+LAE YP +D LAS+SR+ + S + ++ L L+ ++E + +G Y+PG
Sbjct: 322 SRALAERNHYPAIDVLASLSRVMSQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPG 381
Query: 399 VDLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKL 437
D D A+ ++ I FL+QS + S ++E ++L
Sbjct: 382 SDPETDDAIDKIDAIRAFLRQSTDEYSP---YEETLEQL 417
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins.
Length = 440
Score = 370 bits (951), Expect = e-103
Identities = 175/398 (43%), Positives = 246/398 (61%), Gaps = 13/398 (3%)
Query: 45 LGDFVVHQGKNSDN--LGQVIRINLDIVYICPVGIGEEISLGDLVFHWG---RFRISPSA 99
+GD + + + S+ + +V+ N + V++ P E + G V G ++
Sbjct: 44 VGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGL 103
Query: 100 CWCGRVINALGKPIDGD-DSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPL 158
GRV++ LGKPIDG L + I + + P + R + + TG+R ID +
Sbjct: 104 L--GRVLDGLGKPIDGKGKFLDNVETEGLITAPINP-LKRAPIREILSTGVRSIDGLLTV 160
Query: 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKS 217
GQRIG+FAGSG+GKSTLL M AR+ D +I+L+GERGREVREFIE LG + LK+S
Sbjct: 161 GKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRS 220
Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELP 277
VVVVATSD+SP+LR A IAEYF +G +VLL++DS+TRFA + REI +GE P
Sbjct: 221 VVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPP 280
Query: 278 VARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIV 337
+GY SVFS LPRLLER G S KG+ITA +VLV+GD+ N+PIADSVR ILDGHIV
Sbjct: 281 ATKGYTPSVFSTLPRLLERAGAS--GKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIV 338
Query: 338 LNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRP 397
L+R+LA+ G YP +D LAS+SRL S + ++ L+ ++++ D+ IG Y+
Sbjct: 339 LSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQR 398
Query: 398 GVDLILDKAVHQVPIIYDFLKQSPSDLSS-EDVFQEIT 434
G D LD A+ + P + FLKQ ++ + E+ Q++
Sbjct: 399 GSDRELDFAIAKYPKLERFLKQGINEKVNFEESLQQLE 436
>gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 413
Score = 361 bits (928), Expect = e-100
Identities = 173/382 (45%), Positives = 241/382 (63%), Gaps = 8/382 (2%)
Query: 59 LGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDD 117
L +V+ + V + P+G E I G LV GR I GRV++ LG+P+DG+
Sbjct: 35 LAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEG 94
Query: 118 SLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTL 177
+ G+ + + P + R R+ +TGI+ ID + GQR+G+FAGSG+GKSTL
Sbjct: 95 PI-IGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL 153
Query: 178 LSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPL 236
L M AR+ D +I+L+GERGREVR+FIE LG + LK+SVVVVATSD+ ++R A
Sbjct: 154 LGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAF 213
Query: 237 TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLER 296
TA IAEYF +G +VLL++DS+TRFA + REI GE P RGY SVFS LP+LLER
Sbjct: 214 TATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLER 273
Query: 297 IGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLAS 356
G S+K G+IT +VLVDGD+ N+PIAD+VR ILDGHIVL+R LA + YP +D LAS
Sbjct: 274 SGNSQK--GSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLAS 331
Query: 357 VSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDF 416
VSR+ ++ S + K+L L L+ ++E D+ IG Y+ G + +D+A+ + I F
Sbjct: 332 VSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSF 391
Query: 417 LKQSPSDLSSEDVFQEITKKLQ 438
LKQ + + F+E + L+
Sbjct: 392 LKQGIDEKFT---FEETVQLLK 410
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 341 bits (877), Expect = 2e-94
Identities = 170/431 (39%), Positives = 247/431 (57%), Gaps = 16/431 (3%)
Query: 16 SKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFV--VHQGKNSDNLGQVIRINLDIVYIC 73
NL + G I+ I+ L+ +GD V + LG V+ I + I
Sbjct: 12 KFNLSPRFGSITKISPTIIEADGLN--PSVGDIVKIESSDNGKECLGMVVVIEKEQFGIS 69
Query: 74 PVGIGEEISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDL----SMEI 128
P E +GD VF I GRV++ LG+PIDG KG + I
Sbjct: 70 PFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDG-----KGAIDYERYAPI 124
Query: 129 MSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188
M AM R +++ F G++ ID GQ++G+FAGSG+GKSTL+ M +
Sbjct: 125 MKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAP 184
Query: 189 KVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSK 248
+++L+GERGRE+ EFIE LG +L+ +V+VVATSD+SP++RK A+++AEYF ++
Sbjct: 185 IKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQ 244
Query: 249 GDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNIT 308
G +VL I+DS+TRFA + REI GE P ++GYP SV S LP+L+ER G E+ KG+IT
Sbjct: 245 GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAG-KEEGKGSIT 303
Query: 309 AVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSAD 368
A +VLV+GD+ +DPIAD RSILDGHIVL+R L + G YPP++ L S SR+ + S +
Sbjct: 304 AFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPE 363
Query: 369 EKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSS-E 427
K L +E + IG Y+ G D LD+A+ + + FLKQ+P++L E
Sbjct: 364 HKLAARKFKRLYSLLKENEVLIRIGAYQKGNDKELDEAISKKEFMEQFLKQNPNELFPFE 423
Query: 428 DVFQEITKKLQ 438
F+++ + L+
Sbjct: 424 QTFEQLEEILR 434
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 330 bits (847), Expect = 6e-91
Identities = 160/381 (41%), Positives = 230/381 (60%), Gaps = 11/381 (2%)
Query: 43 VCLGDFVVHQGKNSDN--LGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSA 99
VC +H D +V+ + V + P EI+ G LV G+ + +
Sbjct: 42 VCY----IHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEVKVGS 97
Query: 100 CWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC 159
G+V++ALG+P+DG +L KG + P + R + + + G+R ID +
Sbjct: 98 GLIGQVLDALGEPLDGS-ALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVG 156
Query: 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSV 218
GQR+G+FAGSG+GKSTL+ M AR+ D +I+L+GERGREVREFIE LG + LK+S+
Sbjct: 157 KGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSI 216
Query: 219 VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPV 278
VVVATSD+ ++R TA IAEYF +G NV+L++DS+TR A + REI GE P
Sbjct: 217 VVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPT 276
Query: 279 ARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVL 338
+GY SVF+ LP+LLER G + G+ITA +VLVDGD+ N+PIAD+VR ILDGH VL
Sbjct: 277 TKGYTPSVFAILPKLLERTGTNAS--GSITAFYTVLVDGDDMNEPIADTVRGILDGHFVL 334
Query: 339 NRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPG 398
+R LA +G+YP ++ L SVSR+ + S + K+ + L+ ++ + D+ IG Y+ G
Sbjct: 335 DRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRG 394
Query: 399 VDLILDKAVHQVPIIYDFLKQ 419
+D+A+ P I FLKQ
Sbjct: 395 SSREIDEAIQFYPQIISFLKQ 415
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 326 bits (837), Expect = 8e-90
Identities = 158/390 (40%), Positives = 226/390 (57%), Gaps = 11/390 (2%)
Query: 50 VHQGK-----NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACWCG 103
V QG+ L +V+ I ++ + P + + G V G ++ A G
Sbjct: 48 VAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAG 107
Query: 104 RVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQR 163
R+++ LG PIDG L ++ P + RQ +E+ TGIR ID GQR
Sbjct: 108 RILDGLGAPIDGGPPLTGQWRELD--CPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQR 165
Query: 164 IGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLK-KSVVVVA 222
IG+FA +G+GKSTLL M D ++++L+GERGREVREF+E L + ++VVVVA
Sbjct: 166 IGIFAAAGVGKSTLLGMLCADSAADVMVLALIGERGREVREFLEQVLTPEARARTVVVVA 225
Query: 223 TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGY 282
TSD + R TA TIAEYF +G VLL+ DS+TR+A + REI +GE P A +
Sbjct: 226 TSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSF 285
Query: 283 PTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSL 342
P SVF+ LPRLLER G S++ G+ITA +VLV+GD+ N+P+AD VRS+LDGHIVL+R L
Sbjct: 286 PPSVFANLPRLLERTGNSDR--GSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRL 343
Query: 343 AEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLI 402
A G YP +D ASVSR+ + SA + + L ++ ++E + +G Y+ G DL
Sbjct: 344 AGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQ 403
Query: 403 LDKAVHQVPIIYDFLKQSPSDLSSEDVFQE 432
D+A+ + P I FL+Q S+ + + E
Sbjct: 404 ADEALQRYPAICAFLQQDHSETAHLETTLE 433
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 320 bits (822), Expect = 5e-88
Identities = 150/337 (44%), Positives = 209/337 (62%), Gaps = 7/337 (2%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
GRV++ LG+P DG + + + P M+R+ +E G+RVID GQ
Sbjct: 105 GRVLDGLGQPFDGGHPP-EPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQ 163
Query: 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVV 221
R+G+FA +G GKSTLL+ RS D +++L+GERGREVREFIE LG + L+K+V+VV
Sbjct: 164 RMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVV 223
Query: 222 ATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARG 281
ATSD + R A A +IAEYF +G VLL++DS+TRFA + REI +GE P RG
Sbjct: 224 ATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRG 283
Query: 282 YPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRS 341
YP SVF+ LPRL+ER G S +KG+ITA+ +VLV+GD+ +P+AD RSILDGHI+L+R
Sbjct: 284 YPPSVFAALPRLMERAGQS--DKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRK 341
Query: 342 LAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDL 401
LA YP +D L S SR+ ++ S + K L L+ ++EE + IG Y+ G D
Sbjct: 342 LAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDK 401
Query: 402 ILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKLQ 438
D+A+ ++ I FL+Q +LS F E L+
Sbjct: 402 EADQAIERIGAIRGFLRQGTHELSH---FNETLNLLE 435
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 310 bits (796), Expect = 5e-85
Identities = 159/371 (42%), Positives = 224/371 (60%), Gaps = 5/371 (1%)
Query: 60 GQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACWCGRVINALGKPIDGDDS 118
+V+ + D+ + P G +S G V GR + GRVI+ LG+PIDG
Sbjct: 62 AEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGP 121
Query: 119 LGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178
L D + +++ P M+R+ VE TG+R++D L GQR+G+FA +G+GKSTL+
Sbjct: 122 L-DCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLM 180
Query: 179 SMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLT 237
MFAR D +I+L+GERGREVREFIE LG D + +SVVV ATSD S I R A
Sbjct: 181 GMFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYV 240
Query: 238 AVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERI 297
A IAEYF +G VLL++DS+TRFA + REI +GE P RG+P SVF+ELPRLLER
Sbjct: 241 ATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERA 300
Query: 298 GPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASV 357
G E G+ITA+ +VL + ++ +DPIA+ VR ILDGH++L+R +A +YP +D L S+
Sbjct: 301 GMG--ETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSL 358
Query: 358 SRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFL 417
SR+ + + + L L+ + E + +G YR G D + D+A+ ++ I DFL
Sbjct: 359 SRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADEAIAKIDAIRDFL 418
Query: 418 KQSPSDLSSED 428
Q + S D
Sbjct: 419 SQRTDEYSDPD 429
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 310 bits (795), Expect = 6e-85
Identities = 156/370 (42%), Positives = 223/370 (60%), Gaps = 19/370 (5%)
Query: 61 QVIRINLDIVYICPVGIGEEISLGDLVF---HWGRFRISPSACWCGRVINALGKPIDGDD 117
+V+ + D V++ PVG I+ G V GR + S GRV++ G+ +DG
Sbjct: 68 EVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSML--GRVLDGAGRALDG-- 123
Query: 118 SLGKGDLSMEIMSKVP---PAMN---RQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSG 171
KG + E VP P +N R + + GIR I+ + GQR+G+FAG+G
Sbjct: 124 ---KGPMKAE--DWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTG 178
Query: 172 IGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPIL 230
+GKS LL M R D +++ L+GERGREV+EFIE LG+ LK+SVVV + +D++P++
Sbjct: 179 VGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLM 238
Query: 231 RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSEL 290
R A + IAEYF KG NVLL++DS+TRFA + REIA GE P +GYP SVF++L
Sbjct: 239 RLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKL 298
Query: 291 PRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPP 350
P+L+ER G +E G+ITA +VL +GD+ DPIADS R +LDGHIVL+R LAEEG YP
Sbjct: 299 PKLVERAGNAEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPA 358
Query: 351 VDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQV 410
+D AS+SR+ + + + L R++++RD+ +G Y G D D A+ +
Sbjct: 359 IDIEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARF 418
Query: 411 PIIYDFLKQS 420
P + FL+Q
Sbjct: 419 PHLVQFLRQG 428
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 301 bits (772), Expect = 3e-82
Identities = 144/340 (42%), Positives = 211/340 (62%), Gaps = 10/340 (2%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSME-IMSKVPPAMN---RQRVEKGFKTGIRVIDIFTPL 158
GRVI+ +G P+DG G + + S+ P +N R+ + + G+R I+ +
Sbjct: 105 GRVIDGVGNPLDG-----LGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTV 159
Query: 159 CHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKS 217
GQR+G+FAGSG+GKS LL M R D +++ LVGERGREV+EFIE+ LG + +S
Sbjct: 160 GKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRARS 219
Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELP 277
VVV A +D SP++R TA TIAEYF +G NVLL++DS+TR+A + REIA GE P
Sbjct: 220 VVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPP 279
Query: 278 VARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIV 337
+GYP SVF++LP L+ER G +G+ITA +VL +GD+ DPIAD+ R+ILDGHIV
Sbjct: 280 ATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVLTEGDDLQDPIADASRAILDGHIV 339
Query: 338 LNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRP 397
L+R LA+ G YP +D AS+SR+ S + + + + + +++ RD+ IG Y+
Sbjct: 340 LSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQ 399
Query: 398 GVDLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKL 437
G D +D A+ P + FL+Q+ + D+ + K+L
Sbjct: 400 GSDPRIDNAIRLQPAMNAFLQQTMKEAVPYDMSVNMLKQL 439
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 299 bits (768), Expect = 8e-82
Identities = 152/366 (41%), Positives = 208/366 (56%), Gaps = 14/366 (3%)
Query: 61 QVIRINLDIVYICPVGIGEEISLGDLVF---HWGRFRISPSACWCGRVINALGKPIDGDD 117
QV+ + DI Y+ P + G VF G I S W GRVIN LG+P+DG
Sbjct: 55 QVVGFDRDITYLMPFKHPGGVLGGARVFPSEQDGELLIGDS--WLGRVINGLGEPLDGKG 112
Query: 118 SLGKGDLSMEIMSKVPPAMN---RQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGK 174
LG G + + P ++ R+ V+ G+ I+ + GQR+G+ AGSG+GK
Sbjct: 113 QLG-GS---TPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGK 168
Query: 175 STLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGD-NLKKSVVVVATSDESPILRKM 233
S LL M R D V++ L+GERGREV+EFIE L + KSVVV A +DESP++R
Sbjct: 169 SVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228
Query: 234 APLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRL 293
A IA Y+ KG +VLL++DS+TR+A + REIA + GE P +GYP S FS +PRL
Sbjct: 229 ATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRL 288
Query: 294 LERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDP 353
E G S G +TA+ +VL +GD+ DPI D R++LDGHIVL+R LAE G YP +D
Sbjct: 289 AESAGNSSG-NGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDI 347
Query: 354 LASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPII 413
S+SR + + + K S L + + + +GGY G D + D+AVH P I
Sbjct: 348 SQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMADQAVHYYPAI 407
Query: 414 YDFLKQ 419
FL+Q
Sbjct: 408 TQFLRQ 413
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 290 bits (744), Expect = 4e-79
Identities = 159/381 (41%), Positives = 221/381 (58%), Gaps = 6/381 (1%)
Query: 54 KNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISP-SACWCGRVINALGKP 112
K + L +V+ IN + P + G V R P GRVI+ G+P
Sbjct: 49 KPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP 108
Query: 113 IDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGI 172
+DG + L + + PPAM RQ + + TGIR ID GQR+G+F+ G+
Sbjct: 109 LDGRE-LPDVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV 166
Query: 173 GKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKS-VVVVATSDESPILR 231
GKSTLL+M + D ++ L+GERGREVREFI+ L + +K V+VVATSD + R
Sbjct: 167 GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER 226
Query: 232 KMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELP 291
A A TIAE+F G V+L+ DS+TR+A + REIA +GE V+ YP VFS LP
Sbjct: 227 VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP 286
Query: 292 RLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPV 351
RLLER G EK G+ITA +VLV+GD+ N+P+AD VRS+LDGHIVL+R LAE G YP +
Sbjct: 287 RLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI 344
Query: 352 DPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVP 411
D LA++SR+ S + ++L + L + ++E + IG Y+ GVD DKA+ P
Sbjct: 345 DVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP 404
Query: 412 IIYDFLKQSPSDLSSEDVFQE 432
I FL+QS ++ ++ E
Sbjct: 405 DICTFLRQSKDEVCGPELLIE 425
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 280 bits (717), Expect = 6e-76
Identities = 149/343 (43%), Positives = 218/343 (63%), Gaps = 15/343 (4%)
Query: 103 GRVINALGKPIDGDDSLGKGDL-----SMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTP 157
GRV+N LG+PID + KG L + I P ++R ++ TG+R ID
Sbjct: 104 GRVLNGLGEPIDTET---KGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLT 160
Query: 158 LCHGQRIGVFAGSGIGKSTLLSMFAR-SDCFDKVIISLVGERGREVREFIEDYLG-DNLK 215
+ GQRIG+FAG+G+GKS+LL M AR ++ D +I+L+GERGREVREFIE LG + +K
Sbjct: 161 VARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMK 220
Query: 216 KSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGE 275
+SV+VV+TSD+S LR A IAEYF +G V+L++DS+TRFA ++RE+ +GE
Sbjct: 221 RSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGE 280
Query: 276 LPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGH 335
P GY SVFS LP+LLER G S +KG ITA +VLV GD+ N+P+AD V+SILDGH
Sbjct: 281 PPARAGYTPSVFSTLPKLLERSGAS--DKGTITAFYTVLVAGDDMNEPVADEVKSILDGH 338
Query: 336 IVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGY 395
IVL+ +LA+ YP +D LAS+SRL ++++++ ++ +++ + IG Y
Sbjct: 339 IVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEY 398
Query: 396 RPGVDLILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKLQ 438
R G D +D A+ + + FLKQ D+ + ++E ++L+
Sbjct: 399 RRGSDREVDFAIDHIDKLNRFLKQ---DIHEKTNYEEAAQQLR 438
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 278 bits (712), Expect = 3e-75
Identities = 143/327 (43%), Positives = 197/327 (60%), Gaps = 2/327 (0%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
GRV++ GKP+DG + G+ I P + R +E TG+R I+ + GQ
Sbjct: 118 GRVLDGSGKPLDGLPAPDTGETGALITPPFNP-LQRTPIEHVLDTGVRAINALLTVGRGQ 176
Query: 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVV 221
R+G+FAGSG+GKS LL M AR D +++ L+GERGREV++FIE+ LG + +SVV+
Sbjct: 177 RMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIA 236
Query: 222 ATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARG 281
A +D SP+LR A IAE F +G +VLLI+DS+TR+A + REIA GE P +G
Sbjct: 237 APADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKG 296
Query: 282 YPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRS 341
YP SVF++LP L+ER G G+ITA +VL +GD+ DPIADS R+ILDGHIVL+R
Sbjct: 297 YPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRR 356
Query: 342 LAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDL 401
LAE G YP +D AS+SR V L+ F+ RD+ +G Y G D
Sbjct: 357 LAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQLLSSFQRNRDLVSVGAYAKGSDP 416
Query: 402 ILDKAVHQVPIIYDFLKQSPSDLSSED 428
+LDKA+ P + FL+Q + + +
Sbjct: 417 MLDKAIALWPQLEAFLQQGIFERADWE 443
>gnl|CDD|181253 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 273 bits (701), Expect = 6e-74
Identities = 132/327 (40%), Positives = 188/327 (57%), Gaps = 16/327 (4%)
Query: 103 GRVINALGK---PIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLC 159
G V++ GK D ++G I P R+ + + TG+R ID
Sbjct: 90 GAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCG 149
Query: 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKS-- 217
GQR+G+FA +G GK++L++M D +I L+GERGREV EF+E L+ S
Sbjct: 150 VGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVES-----LRASSR 204
Query: 218 ----VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNS 273
V+V ATSD S + R A L A T+AEYF +G V+L +DS+TR+A ++R++A +
Sbjct: 205 REKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAA 264
Query: 274 GELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILD 333
GELP RGYP SVF LPRLLER G + G+ITA +VL++ + DPI D +RSILD
Sbjct: 265 GELPARRGYPASVFDSLPRLLERPGAT--LAGSITAFYTVLLESEEEPDPIGDEIRSILD 322
Query: 334 GHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIG 393
GHI L+R LA +G YP +D L SVSR+ + ++L ++ L+ R EE + +G
Sbjct: 323 GHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLG 382
Query: 394 GYRPGVDLILDKAVHQVPIIYDFLKQS 420
YR G + D+A+ + P + FLKQ
Sbjct: 383 EYRRGENADNDRAMDKRPALEAFLKQD 409
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 227 bits (581), Expect = 3e-60
Identities = 145/385 (37%), Positives = 219/385 (56%), Gaps = 14/385 (3%)
Query: 59 LGQVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSACWC-GRVINALGKPIDGDD 117
L +VI I + + P E++ GD V + P G+V++A G+ ++ +
Sbjct: 54 LCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEA 113
Query: 118 SLGKGDLSMEIMSKVPP--AMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKS 175
+I PP A R+ + F+TGI+ ID + GQ+IG+FAGSG+GKS
Sbjct: 114 ENIP---LQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKS 170
Query: 176 TLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMA 234
TLL M A++ D +ISLVGERGREV++FI LG + ++KSVVVVATSDES +++ A
Sbjct: 171 TLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230
Query: 235 PLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLL 294
A +IAEYF +G+NVLL++DS+TRFA + R + ELP+ G + S + +LL
Sbjct: 231 AKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLL 289
Query: 295 ERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPL 354
ER G + +KG+IT + +VLVDGD+ N P+ D R ILDGHIVL R LA YP + L
Sbjct: 290 ERSGKT--QKGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVL 347
Query: 355 ASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD-LILDKAVHQVPII 413
SVSR+ ++ S + +L + + ++ ++E +G + + + + ++V I
Sbjct: 348 DSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAYIFECKNKVEGI 407
Query: 414 YDFLKQSPSDLSSEDVFQEITKKLQ 438
FLKQ SD F +I + +
Sbjct: 408 NTFLKQGRSDSFQ---FDDIVEAMH 429
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 219 bits (560), Expect = 1e-57
Identities = 142/417 (34%), Positives = 217/417 (52%), Gaps = 17/417 (4%)
Query: 24 GYISSITSVYYTVTCLSQYVCLGDFV-VHQGKNSDNLGQVIRINLDIVYICPVGIGEEIS 82
G +S ++ LS CLG+ + K+ L +VI + + + ++
Sbjct: 21 GLLSRVSGNLLEAQGLS--ACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVA 78
Query: 83 LGDLVFHWGRFRISP-SACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRV 141
LG V R S GRV++ G P+DG + L K L + S P M+RQ +
Sbjct: 79 LGAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLK-PLFSSPPSPMSRQPI 137
Query: 142 EKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGRE 201
++ F TGI+ ID F L GQRIGVF+ G GKS+LLS A+ +I+L+GERGRE
Sbjct: 138 QEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGRE 197
Query: 202 VREFIEDYL-GDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260
VRE+IE + G ++++++ + + E+ + +A A+TIAEYF +G VL I+DS++
Sbjct: 198 VREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLS 257
Query: 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH 320
R+ +++E+A GE A Y SVF + ER G +KG+ITA+ ++L NH
Sbjct: 258 RWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAG--NNDKGSITALYAILHYP-NH 314
Query: 321 NDPIADSVRSILDGHIVLN---RSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLT 377
D D ++S+LDGH L ++LA PP+D L S+SR A + L
Sbjct: 315 PDIFTDYLKSLLDGHFFLTPQGKALAS----PPIDILTSLSRSARQLALPHHYAAAEELR 370
Query: 378 HLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQSPSDLSS-EDVFQEI 433
L+ + E DI +G Y PG D LD+AV +P I FL Q S + + +++
Sbjct: 371 SLLKAYHEALDIIQLGAYVPGQDAHLDRAVKLLPSIKQFLSQPLSSYCALHNTLKQL 427
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 173 bits (440), Expect = 1e-43
Identities = 100/299 (33%), Positives = 158/299 (52%), Gaps = 11/299 (3%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKG-FKTGIRVIDIFTPLCHG 161
GR+++ LG+P+DG L + I S P + Q +TGI+VID+ P+ G
Sbjct: 86 GRLLDVLGEPLDGGPPLP-AEERRPIHST-IPPLAEQDTSTEILETGIKVIDLLCPIAKG 143
Query: 162 QRIGVFAGSGIGKSTLLS--MFARSDCFDKV-IISLVGERGREVREFIEDYLGDN-LKKS 217
+ G+F G+G+GK+ L+ +F S + + VGER RE E + L K+
Sbjct: 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKT 203
Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYF-SSKGDNVLLILDSITRFAHSIREIATNSGEL 276
V+V +E P R LT +TIAEY + ++VLL +D+I RF + E++ G +
Sbjct: 204 VMVYGQMNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRM 263
Query: 277 PVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHI 336
P GY ++ SE+ L ERI + + G+IT++ +V V D+ DP A ++ S LD +
Sbjct: 264 PSRVGYQPTLASEVAELQERI--ASTKNGSITSIQAVYVPADDLTDPAAVAIFSHLDSTV 321
Query: 337 VLNRSLAEEGRYPPVDPLASVSRLADKAWSADEK-KLVSSLTHLIHRFEETRDIRLIGG 394
VL+R+ A +G YP +DPLAS S L D + + ++ R++E D+ I G
Sbjct: 322 VLSRAQAAKGIYPAIDPLASSSNLLDPLVVGERHYDAAIEVKRILQRYKELEDVIAILG 380
>gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit.
Length = 461
Score = 164 bits (418), Expect = 3e-41
Identities = 101/302 (33%), Positives = 158/302 (52%), Gaps = 17/302 (5%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKG-FKTGIRVIDIFTPLCHG 161
GR+ N LG+PID + + + + P+ Q + +TGI+VID+ P G
Sbjct: 86 GRIFNVLGEPIDEKGPIPAKERWP--IHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKG 143
Query: 162 QRIGVFAGSGIGKSTLLSMFARSDCFDKVIISL---VGERGRE----VREFIEDYLGDNL 214
+IG+F G+G+GK+ L+ + + S+ VGER RE E E +
Sbjct: 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKE---SGVI 200
Query: 215 KKSVVVVATSDESPILRKMAPLTAVTIAEYF-SSKGDNVLLILDSITRFAHSIREIATNS 273
K+ +V +E P R LT +T+AEYF +G +VLL +D+I RF + E++
Sbjct: 201 DKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALL 260
Query: 274 GELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILD 333
G +P A GY ++ +E+ L ERI + + G+IT+V +V V D+ DP + + LD
Sbjct: 261 GRMPSAVGYQPTLATEMGELQERI--TSTKTGSITSVQAVYVPADDLTDPAPATTFAHLD 318
Query: 334 GHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEK-KLVSSLTHLIHRFEETRDIRLI 392
VL+R +AE G YP VDPL S SRL D + +E + + ++ R++E +DI I
Sbjct: 319 ATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAI 378
Query: 393 GG 394
G
Sbjct: 379 LG 380
>gnl|CDD|181752 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 159 bits (404), Expect = 2e-39
Identities = 100/278 (35%), Positives = 144/278 (51%), Gaps = 34/278 (12%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVE-KGFKTGIRVIDIFTPLCHG 161
GR+ N LG+PID + + I K P+ + + +TGI+VID+ P G
Sbjct: 87 GRIFNVLGEPIDEKGPI-GAEERWPIHRK-APSFEELSTKTEILETGIKVIDLLAPYAKG 144
Query: 162 QRIGVFAGSGIGKSTL--------------LSMFARSDCFDKVIISLVGERGREVREFIE 207
+IG+F G+G+GK+ L S+FA VGER RE +
Sbjct: 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG-----------VGERTREGNDLYH 193
Query: 208 DYLGDN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYF-SSKGDNVLLILDSITRFAHS 265
+ L K+ +V +E P R LT +T+AEYF +G +VLL +D+I RF +
Sbjct: 194 EMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQA 253
Query: 266 IREIATNSGELPVARGY-PTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPI 324
E++ G +P A GY PT + +E+ +L ERI S K KG+IT+V +V V D+ DP
Sbjct: 254 GSEVSALLGRMPSAVGYQPT-LATEMGQLQERI-TSTK-KGSITSVQAVYVPADDLTDPA 310
Query: 325 ADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD 362
+ + LD VL+R +AE G YP VDPL S SR+ D
Sbjct: 311 PATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILD 348
>gnl|CDD|162170 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases.
Length = 458
Score = 150 bits (381), Expect = 5e-37
Identities = 92/305 (30%), Positives = 156/305 (51%), Gaps = 14/305 (4%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
GR++N G+PIDG + + + + P R+ E+ +TGI ID L GQ
Sbjct: 84 GRILNGSGEPIDGGPEIVPDERRDINGAPINPY-AREYPEEFIQTGISAIDGMNTLVRGQ 142
Query: 163 RIGVFAGSGIGKSTLLSMFAR------SDCFDKVIISLVGERGREVREFIEDYLGDN-LK 215
++ +F+GSG+ + L + AR + V+ + +G E F++D+ L+
Sbjct: 143 KLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALE 202
Query: 216 KSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGD-NVLLILDSITRFAHSIREIATNSG 274
++VV + +D+ + R + P A+T AEY + + D +VL+IL +T + ++REI+
Sbjct: 203 RAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAARE 262
Query: 275 ELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDG 334
E+P RGYP ++++L + ER G + +KG+IT + + + GD+ PI D I +G
Sbjct: 263 EVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDDITHPIPDLTGYITEG 322
Query: 335 HIVLNRSLAEEGRYPPVDPLASVSRLADKAWSA-----DEKKLVSSLTHLIHRFEETRDI 389
IVL+R L +G YPP++ L S+SRL D K + L + R +
Sbjct: 323 QIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGL 382
Query: 390 RLIGG 394
I G
Sbjct: 383 VAIVG 387
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 149 bits (379), Expect = 1e-36
Identities = 91/294 (30%), Positives = 147/294 (50%), Gaps = 11/294 (3%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
R+ + G ID + + + P R + F+TGI+ ID+ PL G
Sbjct: 81 SRMFDVFGNTIDRREPPKDVEWR-SVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGG 139
Query: 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISL---VGERGREVREFIEDYLGDN--LKKS 217
+ G+F G+G+GK+ LL+ + +S+ +GER RE E + + + L +
Sbjct: 140 KAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYRE-MKEAGVLDNT 198
Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYF-SSKGDNVLLILDSITRFAHSIREIATNSGEL 276
V+V +E P R TA+T+AEYF + +VLL++D+I RF + E++ G++
Sbjct: 199 VMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQM 258
Query: 277 PVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHI 336
P GY ++ +EL L ERI + G IT++ +V V D+ DP A S L +
Sbjct: 259 PSRLGYQPTLGTELAELEERI--ATTSDGAITSIQAVYVPADDFTDPAAVHTFSHLSASL 316
Query: 337 VLNRSLAEEGRYPPVDPLASVSRLADKAWSADEK-KLVSSLTHLIHRFEETRDI 389
VL+R A EG YP +DPL S S++A + L + + ++EE +DI
Sbjct: 317 VLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDI 370
>gnl|CDD|179779 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 146 bits (370), Expect = 1e-35
Identities = 104/327 (31%), Positives = 164/327 (50%), Gaps = 35/327 (10%)
Query: 60 GQVIRINLDIVYICPVGIGEEISLGD--LVFHWGRFRISPSACWCGRVINALGKPIDGDD 117
GQV+ ++ D + + L D + F ++ S GR+ + LG+PIDG
Sbjct: 41 GQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDG-- 98
Query: 118 SLGKGDLSMEIMSK-----VPPAMN---RQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAG 169
EI+ + +N R+ E+ +TGI ID L GQ++ +F+G
Sbjct: 99 -------GPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSG 151
Query: 170 SGIGKSTLLSMFAR------SDCFDKVIISLVGERGREVREFIEDY--LGDNLKKSVVVV 221
SG+ + L + AR + V+ + +G E F+ED+ G L++SVV +
Sbjct: 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETG-ALERSVVFL 210
Query: 222 ATSDESPILRKMAPLTAVTIAEYFS-SKGDNVLLILDSITRFAHSIREIATNSGELPVAR 280
+D+ I R + P A+T AEY + KG +VL+IL +T + ++REI+ E+P R
Sbjct: 211 NLADDPAIERILTPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRR 270
Query: 281 GYPTSVFSELPRLLERIGPSEKEKGNITAVISVLV---DGDNHNDPIADSVRSILDGHIV 337
GYP ++++L + ER G + +KG+IT I +L D H PI D I +G IV
Sbjct: 271 GYPGYMYTDLATIYERAGRIKGKKGSITQ-IPILTMPDDDITH--PIPDLTGYITEGQIV 327
Query: 338 LNRSLAEEGRYPPVDPLASVSRLADKA 364
L+R L +G YPP+D L S+SRL
Sbjct: 328 LSRELHRKGIYPPIDVLPSLSRLMKDG 354
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 135 bits (343), Expect = 2e-32
Identities = 84/290 (28%), Positives = 136/290 (46%), Gaps = 10/290 (3%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
GRVI+ LG+P+DG L + + P + R V + +TGI+V+D P+ GQ
Sbjct: 105 GRVIDPLGRPLDGGGPL-QATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQ 163
Query: 163 RIGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERGREVREFIE---DYLGDNLKKS 217
R + GK+ + ++ + D + +G++ V IE ++ L+ +
Sbjct: 164 RELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIGQKASAVARVIETLREH--GALEYT 221
Query: 218 VVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELP 277
VVVA + + P L+ +AP IAEYF +G + L++ D +++ A + RE++ P
Sbjct: 222 TVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPP 281
Query: 278 VARGYPTSVFSELPRLLERIGPSEKEK--GNITAVISVLVDGDNHNDPIADSVRSILDGH 335
YP +F RLLER E G++TA+ + + I ++ SI DG
Sbjct: 282 GREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISITDGQ 341
Query: 336 IVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEE 385
I L+ L G+ P VD SVSR+ KA +K L +F E
Sbjct: 342 IYLDSDLFAAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYAQFLE 391
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 126 bits (318), Expect = 1e-29
Identities = 105/339 (30%), Positives = 174/339 (51%), Gaps = 18/339 (5%)
Query: 26 ISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEEISLGD 85
I+ IT TV ++ V G+ + K+ +L QVIR++ D V + G IS GD
Sbjct: 8 ITDITGNVITVE--AEGVGYGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGD 65
Query: 86 LVFHWGR-FRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKG 144
V GR +++ S GR N GKPIDG L +G+ +EI + R +
Sbjct: 66 EVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPEL-EGEP-IEIGGPSVNPVKRIVPREM 123
Query: 145 FKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVRE 204
+TGI +ID+F L Q+I +F+ SG + LL+ A D +I+ +G +
Sbjct: 124 IRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARIALQAEADIIILGGMGLTFDDYLF 183
Query: 205 FIEDYL-GDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGD-NVLLILDSITRF 262
F + + L ++V+ + T+ + P+ + P A+ +AE F+ +G VL++L +T F
Sbjct: 184 FKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNF 243
Query: 263 AHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISV-LVDGDNHN 321
A +++EI+ ++P RGYP S++S+L E+ ++ G+IT +I+V + GD+
Sbjct: 244 ADALKEISITMDQIPSNRGYPGSLYSDLASRYEK-AVDFEDGGSIT-IIAVTTMPGDDVT 301
Query: 322 DPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL 360
P+ D+ I +G L R GR +DP S+SRL
Sbjct: 302 HPVPDNTGYITEGQFYLRR-----GR---IDPFGSLSRL 332
>gnl|CDD|162134 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit.
Length = 501
Score = 124 bits (314), Expect = 3e-29
Identities = 88/285 (30%), Positives = 139/285 (48%), Gaps = 18/285 (6%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSME----IMSKVPPAMNRQRVEKGFKTGIRVIDIFTPL 158
GRV+NALG+PIDG KG + + I P M R+ V + +TGI+ ID P+
Sbjct: 104 GRVVNALGQPIDG-----KGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPI 158
Query: 159 CHGQRIGVFAGSGIGKSTLL--SMFARSDCFDKVIISLVGERG---REVREFIEDYLGDN 213
GQR + GK+ + ++ + D + +G++ +V +E++
Sbjct: 159 GRGQRELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEEH--GA 216
Query: 214 LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNS 273
+ ++VV AT+ +S L+ +AP T T+AEYF G + L+I D +++ A + R+I+
Sbjct: 217 MDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLL 276
Query: 274 GELPVARGYPTSVFSELPRLLERIGP--SEKEKGNITAVISVLVDGDNHNDPIADSVRSI 331
P YP VF RLLER EK G++TA+ + + + I +V SI
Sbjct: 277 RRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVISI 336
Query: 332 LDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSL 376
DG I L L G P ++ SVSR+ A K++ SL
Sbjct: 337 TDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSL 381
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 116 bits (293), Expect = 8e-27
Identities = 86/289 (29%), Positives = 145/289 (50%), Gaps = 8/289 (2%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
GRV++ LG+P+DG L + I PP M+R V +TG++VID P+ GQ
Sbjct: 105 GRVVDPLGRPLDGGGPLASSP-RLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQ 163
Query: 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISL---VGERGREVREFIEDYLGDN-LKKSV 218
R + GK T +++ + + ++ + +G+R V + + + + ++
Sbjct: 164 RELILGDRQTGK-TAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTI 222
Query: 219 VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPV 278
VVV ++ P L+ +AP A +I E+F +G +VL++ D +T+ A + RE++ P
Sbjct: 223 VVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPG 282
Query: 279 ARGYPTSVFSELPRLLERIGPSEKEK--GNITAVISVLVDGDNHNDPIADSVRSILDGHI 336
+P +F RLLER +E G++TA+ + + N + I ++ SI DG I
Sbjct: 283 REAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQI 342
Query: 337 VLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEE 385
L+ +L E G P VD SVSR+ KA A + + L +FEE
Sbjct: 343 YLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQFEE 391
>gnl|CDD|162169 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase.
Length = 466
Score = 106 bits (267), Expect = 1e-23
Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 32/286 (11%)
Query: 103 GRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ 162
GRV N GKPID + D ++I + R E+ +TGI ID+ + GQ
Sbjct: 84 GRVFNGSGKPIDKGPPVLAEDY-LDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQ 142
Query: 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIED-------YLGDNLK 215
+I +F+ +G+ + + + R LV ++V + ED +G N++
Sbjct: 143 KIPIFSAAGLPHNEIAAQICRQAG-------LVKLPTKDVHDGHEDNFAIVFAAMGVNME 195
Query: 216 ----------------KSVVVVATSDESPILRKMAPLTAVTIAEYFS-SKGDNVLLILDS 258
+ + + +++ I R + P A+T AEY + +VL+IL
Sbjct: 196 TARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTD 255
Query: 259 ITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGD 318
++ +A ++RE++ E+P RG+P ++++L + ER G E G+IT + + + D
Sbjct: 256 MSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPND 315
Query: 319 NHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKA 364
+ PI D I +G I ++R L YPP++ L S+SRL A
Sbjct: 316 DITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 361
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases.
Length = 578
Score = 96.3 bits (240), Expect = 1e-20
Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 26/298 (8%)
Query: 122 GDLSMEIMSKVP-----PAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKST 176
GD +++ K P P + E TG R++D F P+ G + G GK+
Sbjct: 178 GDEEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTV 237
Query: 177 LLSMFARSDCFDKVIISLVGERGREVREFIEDY-------LGDNLKKSVVVVATSDESPI 229
A+ D V+ GERG E+ + +E++ G L + V++A + P+
Sbjct: 238 TQHQLAKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPV 297
Query: 230 L-RKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFS 288
R+ + T +TIAEYF G +V L+ DS +R+A ++REI+ E+P GYP + S
Sbjct: 298 AAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLAS 357
Query: 289 ELPRLLERIG-----PSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLA 343
L ER G E+ G++T + +V G + ++P+ + I+ L+ LA
Sbjct: 358 RLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLA 417
Query: 344 EEGRYPPVDPLASVSRLAD--KAWSADE-----KKLVSSLTHLIHRFEETRDI-RLIG 393
+ +P ++ L S S D + W + +++ L+ + E ++I +L+G
Sbjct: 418 QRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQLVG 475
>gnl|CDD|181753 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 93.2 bits (233), Expect = 1e-19
Identities = 86/315 (27%), Positives = 136/315 (43%), Gaps = 78/315 (24%)
Query: 103 GRVINALGKPIDGDDSLG--KGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCH 160
GRV+N LG+PIDG G + + + K P ++R+ V + +TGI+ ID P+
Sbjct: 105 GRVVNPLGQPIDG---KGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGR 161
Query: 161 GQR---IGVFAGSGIGKSTLLSMFARSDCFDKVIIS-----------LVGERG---REVR 203
GQR IG GK+ + D II+ +G++ +V
Sbjct: 162 GQRELIIG---DRQTGKTAI--------AID-TIINQKGKDVICIYVAIGQKASTVAQVV 209
Query: 204 EFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263
+E++ ++ ++VV AT+ + L+ +AP + EYF G + L++ D +++ A
Sbjct: 210 RKLEEH--GAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQA 267
Query: 264 HSIREIATNSGEL----PVAR-GYPTSVF---SELPRLLERIGPSEKEKGN--ITAVISV 313
+ R+++ L P R YP VF S RLLER E G +TA+
Sbjct: 268 VAYRQLS-----LLLRRPPGREAYPGDVFYLHS---RLLERAAKLSDELGGGSLTAL--- 316
Query: 314 LVDGDNHNDPIADS------------VRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLA 361
PI ++ V SI DG I L L G P ++ SVSR+
Sbjct: 317 ---------PIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVG 367
Query: 362 DKAWSADEKKLVSSL 376
A KK+ +L
Sbjct: 368 GAAQIKAMKKVAGTL 382
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 92.4 bits (229), Expect = 2e-19
Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 46/339 (13%)
Query: 80 EISLGDLVFHWGRFRISP-SACWCGRVINALGKPI------------DGDDSLGKGDLSM 126
E+ G V G+ P A G+V+N LG + + + +LGK D
Sbjct: 101 EVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVD--- 157
Query: 127 EIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186
+ P ++R V TG + +D P+ GQR + GK+++ A S
Sbjct: 158 ---AGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSI----AVSTI 210
Query: 187 FDKV-----------IISL---VGERGREV---REFIEDYLGDNLKKSVVVVATSDESPI 229
++V +IS+ +G+R V + Y L+ + V+ AT+ E
Sbjct: 211 INQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSY--GALRYTTVMAATAAEPAG 268
Query: 230 LRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSE 289
L+ +AP + VT+ EYF ++G + L + D +++ A + R+I+ P YP VF
Sbjct: 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYL 328
Query: 290 LPRLLER---IGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEG 346
RLLER + P K G++TA+ V ++ I +V SI DG I L+ L G
Sbjct: 329 HSRLLERAAMLSPG-KGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGG 387
Query: 347 RYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEE 385
+ P V+ SVSR+ A + K + L ++ + +
Sbjct: 388 QRPAVNIGLSVSRVGSSAQNVAMKAVAGKLKGILAEYRK 426
>gnl|CDD|162171 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase.
Length = 591
Score = 91.7 bits (228), Expect = 3e-19
Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 25/233 (10%)
Query: 147 TGIRVIDIFTPLCHGQRIGVFAGSGIGK---STLLSMFARSDCFDKVIISL-VGERGREV 202
TG RV+D P G + G GK S LS ++ SD I+ + GERG E+
Sbjct: 212 TGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSD----AIVYVGCGERGNEM 267
Query: 203 REFIEDY---------LGDNLKKSVVVVATSDESPILRKMAPL-TAVTIAEYFSSKGDNV 252
E + D+ +++ K +VA + P+ + A + T +T+AEYF G NV
Sbjct: 268 AEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNV 327
Query: 253 LLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLER------IGPSEKEKGN 306
++ DS +R+A ++REI+ E+P GYP + + L ER +G E+E G+
Sbjct: 328 SMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPERE-GS 386
Query: 307 ITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSR 359
++ V +V G + +DP+ + I+ L++ LA+ +P V+ L S S+
Sbjct: 387 VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSK 439
>gnl|CDD|179776 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 91.4 bits (228), Expect = 4e-19
Identities = 104/348 (29%), Positives = 164/348 (47%), Gaps = 64/348 (18%)
Query: 116 DDSLGKG-DLSMEIMSKVP-----PAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFA- 168
+D G+G +L+M M K P P + + TG RVID F P+ G G A
Sbjct: 178 EDEDGEGVELTM--MQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKG---GTAAI 232
Query: 169 --GSGIGKSTL---LSMFARSDCFDKVIISLVGERGREVREFIEDY--LGDN------LK 215
G GK+ L+ +A +D VI GERG E+ E +E++ L D ++
Sbjct: 233 PGPFGSGKTVTQHQLAKWADADI---VIYVGCGERGNEMTEVLEEFPELIDPKTGRPLME 289
Query: 216 KSVVVVATSD------ESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREI 269
++V++ TS+ E+ I T +TIAEY+ G +VLL+ DS +R+A ++REI
Sbjct: 290 RTVLIANTSNMPVAAREASIY------TGITIAEYYRDMGYDVLLMADSTSRWAEALREI 343
Query: 270 ATNSGELPVARGYPTSVFSELPRLLERIGPSE---KEKGNITAVISVLVDGDNHNDPIAD 326
+ E+P GYP + S L ER G + E+G++T + +V G + ++P+
Sbjct: 344 SGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVSPPGGDFSEPVTQ 403
Query: 327 SVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD--KAW-----SADEKKLVSSLTHL 379
+ I+ L+ LA+ +P ++ L S S D W D ++L L
Sbjct: 404 NTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDL 463
Query: 380 IHRFEETRDI-RLIG------GYRPGVDLILDKAVHQVPIIYDFLKQS 420
+ R E ++I RL+G R LIL+ A I DFL+Q+
Sbjct: 464 LQREAELQEIVRLVGPDALPEEDR----LILEVARL---IREDFLQQN 504
>gnl|CDD|180863 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 86.6 bits (215), Expect = 1e-17
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 136 MNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKS--TLLSMFARSDCFDKVIIS 193
M + + + TGI ID+ P+ GQR + GK+ L ++ + + K I
Sbjct: 118 MTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIINQKNTNVKCIYV 177
Query: 194 LVGERGREVREFIEDYLGDN--LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDN 251
+G++ RE I + L ++ LK ++++ A S SP + +AP A+ AE S D+
Sbjct: 178 AIGQK-RENLSRIYETLKEHDALKNTIIIDAPS-TSPYEQYLAPYVAMAHAENIS-YNDD 234
Query: 252 VLLILDSITRFAHSIREIA--TNSGELPVAR-GYPTSVFSELPRLLERIGPSEKEKGNIT 308
VL++ D +T+ A+ REIA TN PV + +P +F +LLER G K + IT
Sbjct: 235 VLIVFDDLTKHANIYREIALLTNK---PVGKEAFPGDMFFAHSKLLERAG-KFKNRKTIT 290
Query: 309 AV-ISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSR 359
A+ I VD D I+ ++ SI DG IV + L G+ P +D SVSR
Sbjct: 291 ALPILQTVDND-ITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSR 341
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 82.4 bits (203), Expect = 2e-16
Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 21/219 (9%)
Query: 196 GERGREVREFIEDY-------LGDNLKKSVVVVATSDESPILRKMAPL-TAVTIAEYFSS 247
GERG E+ + +E++ G L + V++A + P+ + A + T +TIAEYF
Sbjct: 691 GERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRD 750
Query: 248 KGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGP-----SEK 302
G +V L+ DS +R+A ++REI+ E+P GYP + S+L ER G S+
Sbjct: 751 MGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDY 810
Query: 303 EKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLAD 362
G+++ + +V G + ++P+ + ++ L+ LA +P ++ L S S D
Sbjct: 811 RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVD 870
Query: 363 --KAW-----SADEKKLVSSLTHLIHRFEETRDI-RLIG 393
K W + K + L+ + E ++I R++G
Sbjct: 871 AVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVG 909
>gnl|CDD|183622 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 69.0 bits (169), Expect = 2e-12
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS------DCFDKVIISLVGERGREVR 203
RV+D+ P+ GQR + A GK+ LL A + + +++ L+ ER EV
Sbjct: 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEV--HLMVLLIDERPEEVT 179
Query: 204 EFIEDYLGDNLKKSV---VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260
+ ++SV V +T D P + A+ +G +V+++LDS+T
Sbjct: 180 DM---------RRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230
Query: 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEK--EKGNITAVISVLVD-G 317
R A + +SG ++ G + P+ L G + E G++T + + LVD G
Sbjct: 231 RLARAYNNEVESSGRT-LSGGVDARAL-QRPKRL--FGAARNIEEGGSLTIIATALVDTG 286
Query: 318 DNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSR 359
++ I + + + IVL+R LA++ +P +D S +R
Sbjct: 287 SRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTR 328
>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. Members of
this family differ in the specificity of RNA binding.
Length = 415
Score = 60.5 bits (147), Expect = 8e-10
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS------DCFDKVIISLVGERGREVR 203
RV+D+F P+ GQR + A GK+ LL A++ + +I+ L+ ER EV
Sbjct: 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVE--LIVLLIDERPEEVT 214
Query: 204 EFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSK-------GDNVLLIL 256
+ G+ VV +T DE V +AE K +V+++L
Sbjct: 215 DMQRSVKGE------VVASTFDEPAS-------RHVQVAEMVIEKAKRLVEHKKDVVILL 261
Query: 257 DSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE--KEKGNITAVISVL 314
DSITR A + + SG++ ++ G + R G + +E G++T + + L
Sbjct: 262 DSITRLARAYNTVTPASGKV-LSGGVDANALHRPKRFF---GAARNIEEGGSLTIIATAL 317
Query: 315 VD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLV 373
+D G ++ I + + + + L+R LA+ +P +D S +R + + +E + +
Sbjct: 318 IDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKI 377
Query: 374 SSLTHLIH 381
L +I
Sbjct: 378 WVLRKIIS 385
>gnl|CDD|181809 PRK09376, rho, transcription termination factor Rho; Provisional.
Length = 416
Score = 56.7 bits (138), Expect = 1e-08
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 53/235 (22%)
Query: 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS------DCFDKVIISLVGERGREVR 203
R+ID+ P+ GQR + A GK+ LL A S + +I+ L+ ER EV
Sbjct: 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEV--HLIVLLIDERPEEVT 215
Query: 204 EFIEDYLGDNLKKSV---VVVATSDESP---------ILRKMAPLTAVTIAEYFSSKGDN 251
+ ++SV VV +T DE ++ K A + E+ G +
Sbjct: 216 DM---------QRSVKGEVVASTFDEPAERHVQVAEMVIEK-----AKRLVEH----GKD 257
Query: 252 VLLILDSITRFAHSIREIATNSGEL------PVARGYPTSVFSELPRLLERIGPSEKEKG 305
V+++LDSITR A + + +SG++ A P F R +E E G
Sbjct: 258 VVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGA-ARNIE-------EGG 309
Query: 306 NITAVISVLVD-GDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSR 359
++T + + L+D G ++ I + + + + L+R LAE+ +P +D S +R
Sbjct: 310 SLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTR 364
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 41.6 bits (97), Expect = 5e-04
Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 37/184 (20%)
Query: 160 HGQRIGVFAGSGIGKSTLLSMFAR-SDCFDKVIISLVGERGREVREFIEDYLGDNLKKSV 218
G+ I + G GK+TL AR +I + GE E + KK+
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 219 VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPV 278
+ A+ +A +LILD IT + +E
Sbjct: 61 GSGE----------LRLRLALALARKLKPD----VLILDEITSLLDAEQEAL-------- 98
Query: 279 ARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVL 338
L R+ K + N+T +++ + D +R D IVL
Sbjct: 99 ----------LLLLEELRLLLLLKSEKNLTVILTTNDE----KDLGPALLRRRFDRRIVL 144
Query: 339 NRSL 342
L
Sbjct: 145 LLIL 148
>gnl|CDD|136106 PRK06904, PRK06904, replicative DNA helicase; Validated.
Length = 472
Score = 33.8 bits (77), Expect = 0.093
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 210 LGDNLKKSVVVVATSD---ESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSI 266
L +N + ++A +D E ILR++ + +S KG ++ ILD R SI
Sbjct: 105 LSNNTPSAANILAYADIVREKAILRELISVGNNIAKNAYSPKGQDIKDILDEAERDVFSI 164
Query: 267 REIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGN--ITAVISVLVDGD 318
E T + E P +V + L +++I N +T V + D D
Sbjct: 165 AEKRTTANE------GPQNVINLLENTIDKIENLAATPTNNGVTGVTTGFTDLD 212
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se.
Length = 1490
Score = 33.7 bits (77), Expect = 0.10
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFAR 183
GQR+G+ +G GKSTLLS R
Sbjct: 1245 GQRVGLLGRTGSGKSTLLSALLR 1267
>gnl|CDD|180177 PRK05636, PRK05636, replicative DNA helicase; Provisional.
Length = 505
Score = 32.5 bits (74), Expect = 0.24
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 141 VEKGFKTGIRVIDIFTPLCH-GQRIGVFAGSGIGKSTLLSMFARS 184
+ G TG + +D T GQ I V A G+GKSTL F RS
Sbjct: 244 IATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRS 288
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 32.1 bits (73), Expect = 0.30
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 134 PAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA 182
P + ++V G+ I + I L G RIG+ +G GKSTL+ + A
Sbjct: 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLA 359
Score = 29.4 bits (66), Expect = 2.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 161 GQRIGVFAGSGIGKSTLLSM 180
GQ++G+ +G GKSTLL++
Sbjct: 27 GQKVGLVGKNGCGKSTLLAL 46
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 31.9 bits (73), Expect = 0.31
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFA 182
G+R+ + SG GKSTLL++ A
Sbjct: 25 GERVAILGPSGAGKSTLLNLIA 46
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 31.4 bits (72), Expect = 0.44
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGE-----RGREVREFIEDYLG 211
G+ + SG GKSTLL++ + FD + L G+ ++ +F + LG
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 30.8 bits (70), Expect = 0.63
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFAR 183
G+R+ + SG GKSTLL +
Sbjct: 361 GERVAILGPSGSGKSTLLMLLTG 383
>gnl|CDD|114953 pfam06261, LktC, Actinobacillus actinomycetemcomitans leukotoxin
activator LktC. This family consists of several
Actinobacillus actinomycetemcomitans leukotoxin
activator (LktC) proteins. Actinobacillus
actinomycetemcomitans is a Gram-negative bacterium that
has been implicated in the etiology of several forms of
periodontitis, especially localized juvenile
periodontitis. LktC along with LktB and LktD are thought
to be required for activation and localisation of the
leukotoxin.
Length = 150
Score = 30.4 bits (68), Expect = 0.83
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 221 VATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPV 278
VA D S LR A L A I +F S N LLIL IT++ R S P+
Sbjct: 72 VAKQDVSLTLRNSALLVASAIVIHFKSNFTN-LLILSQITQY-CRHRPKLKKSKYFPL 127
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 30.4 bits (69), Expect = 1.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 132 VPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA 182
P +N G +T + +D+ P GQ + V SG GKSTLL + A
Sbjct: 11 TPLLLNAVSKRYGERTVLNQLDLHIP--AGQFVAVVGRSGCGKSTLLRLLA 59
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 30.1 bits (68), Expect = 1.1
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 114 DGDDSL--GKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSG 171
DG + + G+G+L + I P + +E ++ L GQ +G+ +G
Sbjct: 302 DGSEPVPEGRGELDVNIRQFTYPQTDHPALE----------NVNFTLKPGQMLGICGPTG 351
Query: 172 IGKSTLLSMFARSDCFD 188
GKSTLLS+ R FD
Sbjct: 352 SGKSTLLSLIQRH--FD 366
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 29.8 bits (68), Expect = 1.3
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 152 IDIFTPLCHGQRIGVFAG-SGIGKSTLL 178
+D PL G ++ V AG SG+GKSTLL
Sbjct: 155 LDELKPLLAG-KVTVLAGQSGVGKSTLL 181
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 29.4 bits (67), Expect = 1.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFAR 183
G+++ + +G GKSTLL + R
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTR 388
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 29.2 bits (66), Expect = 2.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFAR 183
G+R+ + SG GKSTLL++
Sbjct: 348 GERVALVGPSGAGKSTLLNLLLG 370
>gnl|CDD|181916 PRK09505, malS, alpha-amylase; Reviewed.
Length = 683
Score = 29.2 bits (66), Expect = 2.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 158 LCHGQRIGVF----AGSGIGKSTLLSM-----FARSDCFDKVIISLVGER 198
L H Q++G F G GK T LS+ F R DKV++ G++
Sbjct: 634 LAHWQKLGQFRARHPAIGAGKQTTLSLKQYYAFVREHGDDKVMVVWAGQQ 683
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 28.8 bits (65), Expect = 2.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 166 VFAG-SGIGKSTLLSMFA 182
VF G SG GKSTLL M A
Sbjct: 33 VFVGPSGCGKSTLLRMIA 50
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 28.7 bits (65), Expect = 2.9
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 152 IDIFTPLCHGQRIGVFAG-SGIGKSTL 177
+D+ G + G SG+GKSTL
Sbjct: 185 LDVLAAWLSGGKTVALLGSSGVGKSTL 211
>gnl|CDD|130972 TIGR01917, gly_red_sel_B, glycine reductase, selenoprotein B.
Glycine reductase is a complex with two selenoprotein
subunits, A and B. This model represents the glycine
reductase selenoprotein B. Closely related to it, but
excluded from this model, are selenoprotein B subunits
of betaine reductase and sarcosine reductase. All
contain selenocysteine incorporated during translation
at a specific UGA codon.
Length = 431
Score = 28.9 bits (64), Expect = 3.0
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 205 FIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVL 253
+ E+ D KK V V+ T+D + +RK P A + +KG+ +
Sbjct: 115 YEENPGADMFKKEVYVIPTADSAAGMRKALPALAKFALKL--AKGEEIG 161
>gnl|CDD|162997 TIGR02746, TraC-F-type, type-IV secretion system protein TraC. The
protein family described here is common among the F, P
and I-like type IV secretion systems. Gene symbols
include TraC (F-type), TrbE/VirB4 (P-type) and TraU
(I-type). The protein conyains the Walker A and B motifs
and so is a putative nucleotide triphosphatase.
Length = 797
Score = 28.8 bits (65), Expect = 3.0
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 151 VIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS 184
D F I V GSG GKS +
Sbjct: 420 AFDPFDSDSTNYNIAVVGGSGAGKSFFMQELIVD 453
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases.
Length = 188
Score = 28.5 bits (64), Expect = 3.7
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 164 IGVFAGSGIGKSTLLSMFARSDCF-----DKVIISLVGERGREVREFIEDYLGDNL 214
IG+ G G GKST+ + A F DK+ +V E+G E I D+ G +
Sbjct: 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVV-EKGSPAYEKIVDHFGAQI 56
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 28.3 bits (63), Expect = 4.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFA 182
G+ + + SG GKSTLL++ A
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIA 45
>gnl|CDD|182096 PRK09824, PRK09824, PTS system beta-glucoside-specific transporter
subunits IIABC; Provisional.
Length = 627
Score = 28.1 bits (63), Expect = 4.5
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 133 PPAMNRQRVEKGFKTGIRVID-IFTPLCHGQRIGVFAGSGIGKSTL 177
A + I VI IFTPL IGV A +GI K L
Sbjct: 87 QQAPENDKKGNLLNRFIDVISGIFTPL-----IGVMAATGILKGML 127
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 28.1 bits (63), Expect = 4.6
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 15/59 (25%)
Query: 158 LCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKK 216
L G+ +GV SG GKST FAR+ II LV EV +LG +L
Sbjct: 44 LYEGETLGVVGESGCGKST----FARA------IIGLVKATDGEVA-----WLGKDLLG 87
>gnl|CDD|182685 PRK10735, tldD, protease TldD; Provisional.
Length = 481
Score = 28.2 bits (63), Expect = 4.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 325 ADSVRSIL----DGHIVLNRSLAEEGRYPPVDPLASVSR 359
A + R+I+ DG + ++ Y +DPL S+SR
Sbjct: 93 AQAARTIVRDSGDGKVQTLGAVEHSPLYTSLDPLQSMSR 131
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 28.0 bits (63), Expect = 4.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 160 HGQRIGVFAGSGIGKSTL 177
GQR+ + GSG GKST+
Sbjct: 504 PGQRVALVGGSGSGKSTI 521
>gnl|CDD|183406 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 27.9 bits (63), Expect = 4.9
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 162 QRIGVFAG-SGIGKSTLL 178
RI +F G SG+GKS+L+
Sbjct: 205 GRISIFVGQSGVGKSSLI 222
>gnl|CDD|105560 PRK12339, PRK12339, 2-phosphoglycerate kinase; Provisional.
Length = 197
Score = 27.8 bits (62), Expect = 5.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 171 GIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDN--LKKSV 218
G+GK+++ AR D V+ G +REF+ Y+ D L KSV
Sbjct: 13 GVGKTSISGYIARHRAIDIVL------SGDYLREFLRPYVDDEPVLAKSV 56
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 28.1 bits (62), Expect = 5.5
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 140 RVEKGFKT-----GIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISL 194
RVEK KT + +D+ + HG+ + + SG GKSTLL + DK S
Sbjct: 6 RVEKLAKTFNQHQALHAVDL--NIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH 63
Query: 195 VGERGREVREFIEDYLGDNLKKS 217
+ GR V+ E L +++KS
Sbjct: 64 IELLGRTVQR--EGRLARDIRKS 84
>gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
The Aquifex aeolicus ortholog is split into consecutive
open reading frames. Consequently, this model was build
in fragment mode (-f option).
Length = 245
Score = 27.8 bits (62), Expect = 6.4
Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Query: 162 QRIGVFAG-SGIGKSTLL 178
RI VFAG SG+GKS+L+
Sbjct: 120 NRISVFAGQSGVGKSSLI 137
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 27.5 bits (62), Expect = 6.6
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 170 SGIGKSTLLSMFA 182
SG GKSTLL M A
Sbjct: 39 SGCGKSTLLRMVA 51
>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed.
Length = 283
Score = 27.6 bits (61), Expect = 6.8
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 173 GKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRK 232
G+STL M DK +S E ++ E +D +GDN K ++ V +E + K
Sbjct: 50 GESTLYQMVLSKALLDKYKVS--DEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEK 107
Query: 233 MAPLTA 238
M P A
Sbjct: 108 MKPEIA 113
>gnl|CDD|166881 PRK00275, glnD, PII uridylyl-transferase; Provisional.
Length = 895
Score = 27.7 bits (62), Expect = 6.8
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 378 HLIHRFEETRDIR-LIGGYRPGVDLILDKAVHQ 409
L RF RDIR LI VD IL +A HQ
Sbjct: 38 VLDERFRSGRDIRRLIEDRAWFVDQILQQAWHQ 70
>gnl|CDD|149490 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This
family describes a region that is found in proteins
expressed by a variety of eukaryotic and prokaryotic
species. These proteins include various enzymes, such as
senescence marker protein 30 (SMP-30), gluconolactonase
and luciferin-regenerating enzyme (LRE). SMP-30 is known
to hydrolyse diisopropyl phosphorofluoridate in the
liver, and has been noted as having sequence similarity,
in the region described in this family, with PON1 and
LRE.
Length = 246
Score = 27.6 bits (62), Expect = 6.9
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 351 VDPLASVSRLADK-------AWSADEKKL--VSSLTHLIHRFEETRDIRLIGGYRPGVDL 401
+DP V R+ D AWS D K L S T I F+ D LI R D
Sbjct: 120 LDPDGKVERVLDGVTISNGLAWSPDGKTLYFADSPTRRIWAFDYDADGGLISNRRVFADF 179
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 27.5 bits (62), Expect = 7.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 161 GQRIGVFAGSGIGKSTLL 178
G+R+ + +G+GK+TLL
Sbjct: 345 GERLAIIGENGVGKTTLL 362
>gnl|CDD|172384 PRK13863, PRK13863, type IV secretion system T-DNA border
endonuclease VirD2; Provisional.
Length = 446
Score = 27.6 bits (61), Expect = 7.1
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 292 RLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPV 351
RL E G +I A + V ++ + + + + S EG +
Sbjct: 260 RLQEPAG------SSIKADARIRVSLESERRAQPSASKIPVADDFGIETSYVAEGDVRKL 313
Query: 352 DPLASVSRLADKA 364
+ + RLA +
Sbjct: 314 EGNSGTPRLATEV 326
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 27.4 bits (61), Expect = 7.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVV 220
G+ + + SG GKSTL+++ R D I L G + DY +L++ V +
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD-------LADYTLASLRRQVAL 410
Query: 221 V 221
V
Sbjct: 411 V 411
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 27.4 bits (61), Expect = 7.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 161 GQRIGVFAGSGIGKSTLLSMFAR 183
+++G+ +G GKSTLL F R
Sbjct: 1336 REKVGIVGRTGSGKSTLLLTFMR 1358
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 27.5 bits (61), Expect = 7.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 133 PPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA 182
P + + K + G D+ L G+ +G+ SG GKSTLL A
Sbjct: 1 KPLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLA 50
>gnl|CDD|180292 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 27.3 bits (61), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 168 AGSGIGKSTLLSMFAR 183
AGSGIG+ T L+ FAR
Sbjct: 323 AGSGIGRETALA-FAR 337
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 27.3 bits (61), Expect = 8.2
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 130 SKVPPAMNRQRVEKGFKTGIRV---IDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA 182
+ PP + + + K + +G+ V ID FT L G+ + G+G GKSTL+ + A
Sbjct: 6 TTAPPLLCARSISKQY-SGVEVLKGID-FT-LHAGEVHALLGGNGAGKSTLMKIIA 58
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 27.0 bits (60), Expect = 8.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 144 GFKTGIRVI--DIFTPLCHGQRIGVFAGSGIGKSTLLSMFA 182
G+ G I +I L G+ + SG GKSTLL + A
Sbjct: 14 GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVA 54
>gnl|CDD|183032 PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.
Length = 393
Score = 27.1 bits (61), Expect = 9.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 235 PLTAVTIAEYFSSKGDNVLLI 255
A+ A++FS+ DN LL
Sbjct: 4 GFYAIMAAQFFSALADNALLF 24
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.138 0.401
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,196,148
Number of extensions: 481625
Number of successful extensions: 1412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1286
Number of HSP's successfully gapped: 104
Length of query: 438
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 342
Effective length of database: 3,920,105
Effective search space: 1340675910
Effective search space used: 1340675910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)