HHsearch alignment for GI: 254780685 and conserved domain: COG1749

>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion].
Probab=100.00  E-value=0  Score=345.18  Aligned_cols=239  Identities=23%  Similarity=0.350  Sum_probs=192.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             91369999999999999879997754317771133467879999742046765555-32111100002245554455640
Q gi|254780685|r    1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVASGKEYLSKEVGSFISTGTE   79 (243)
Q Consensus         1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~l~~Tg~~   79 (243)
T Consensus         1 m~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~~Gv~~s~i~~i~~qG~~~~T~~~   80 (423)
T COG1749           1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGVGVSSISQIFTQGSFQSTGSN   80 (423)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEECCCC
T ss_conf             91677666666777664033202341345452113267506632010004554467667146645885158854764786


Q ss_pred             EEEEECCCCEEEECCCC-C-EEEEECCCCEECCCCCEECCCCCCCCCCCC-------------CCCCCCCCCC-------
Q ss_conf             21343275024413676-3-123211220156568454146885356645-------------4421000000-------
Q gi|254780685|r   80 LDFALEGDAWFALESPR-G-IILTRDGRFKVTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKD-------  137 (243)
Q Consensus        80 lD~Ai~G~GfF~V~~~~-g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~-------------g~pI~ip~~~-------  137 (243)
T Consensus        81 ~DlAI~G~GFF~v~~~~~~~~~yTRaG~F~~D~~g~LVn~~G~-~l~G~~~~~~~~~~~~~~~~~~i~i~~~~~~~a~~t  159 (423)
T COG1749          81 LDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNPAGL-YLQGYPANGVTGGINGGTTLLNIQIPNNNGLPAKAT  159 (423)
T ss_pred             CCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCC-EEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCC
T ss_conf             3579916717999716898458886675017678867768873-797312468887511455533213345667676432


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780685|r  138 --------------------------------------------------------------------------------  137 (243)
Q Consensus       138 --------------------------------------------------------------------------------  137 (243)
                                                                                                      
T Consensus       160 t~~~~~~NL~~~~~~~~~~~~~n~~~~~~~~~~~s~~~yDs~G~~~~~~~~f~k~~~~tw~v~~~~~~~~~~p~g~a~~~  239 (423)
T COG1749         160 TNVSFSANLNSGAIVPSITAPFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQTGDPDGTADTG  239 (423)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             06522101487775653467878765321145315999926895123567999447871269999435666888766666


Q ss_pred             ---------------------------------------------------------------------CCCCCCCCCCC
Q ss_conf             ---------------------------------------------------------------------00000024542
Q gi|254780685|r  138 ---------------------------------------------------------------------EIFNVGEKGEI  148 (243)
Q Consensus       138 ---------------------------------------------------------------------~~~~i~~dG~i  148 (243)
T Consensus       240 ~~~~l~Fd~~G~L~s~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~l~~~~I~~dG~I  319 (423)
T COG1749         240 TTFTLEFDPAGALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGNLKDYRIDEDGVI  319 (423)
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEEEEEEEECCCCEE
T ss_conf             42578877988601278886434466656576300220453257754885130013456336755305778997799789


Q ss_pred             C---CCC--CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCC----CCCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2---343--2112334545576134432025653456665-65434----566415624222140239999999999999
Q gi|254780685|r  149 S---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPP-TPLED----LSGVTVKRGFLEDSNANSMYEMGQMIHLTQ  218 (243)
Q Consensus       149 ~---~~g--~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~----~~~~~v~qG~LE~SNVn~~~EMv~lI~~qR  218 (243)
T Consensus       320 ~~~ysNG~~~~~gqIaLa~F~N~~GL~~~ggN~~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVDls~EltnmIvaQR  399 (423)
T COG1749         320 VGVYSNGVTQPLGQIALANFANPQGLVKEGGNVYAATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTNLIVAQR  399 (423)
T ss_pred             EEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHHH
T ss_conf             99971882646667887730480106215895785115678614446887873025016332112118999999888665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999998
Q gi|254780685|r  219 KFNSITTLIDENEKSMLEAIRN  240 (243)
Q Consensus       219 afe~~~k~i~~~de~~~~~in~  240 (243)
T Consensus       400 ~YqANsK~i~T~D~mlq~lvnL  421 (423)
T COG1749         400 GYQANAKVITTSDQMLQTLVNL  421 (423)
T ss_pred             HCCCCCCEEEEHHHHHHHHHHH
T ss_conf             0444550686058999999862