HHsearch alignment for GI: 254780685 and conserved domain: COG1749
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion].
Probab=100.00 E-value=0 Score=345.18 Aligned_cols=239 Identities=23% Similarity=0.350 Sum_probs=192.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 91369999999999999879997754317771133467879999742046765555-32111100002245554455640
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVASGKEYLSKEVGSFISTGTE 79 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~l~~Tg~~ 79 (243)
T Consensus 1 m~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~~Gv~~s~i~~i~~qG~~~~T~~~ 80 (423)
T COG1749 1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGVGVSSISQIFTQGSFQSTGSN 80 (423)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEECCCC
T ss_conf 91677666666777664033202341345452113267506632010004554467667146645885158854764786
Q ss_pred EEEEECCCCEEEECCCC-C-EEEEECCCCEECCCCCEECCCCCCCCCCCC-------------CCCCCCCCCC-------
Q ss_conf 21343275024413676-3-123211220156568454146885356645-------------4421000000-------
Q gi|254780685|r 80 LDFALEGDAWFALESPR-G-IILTRDGRFKVTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKD------- 137 (243)
Q Consensus 80 lD~Ai~G~GfF~V~~~~-g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~-------------g~pI~ip~~~------- 137 (243)
T Consensus 81 ~DlAI~G~GFF~v~~~~~~~~~yTRaG~F~~D~~g~LVn~~G~-~l~G~~~~~~~~~~~~~~~~~~i~i~~~~~~~a~~t 159 (423)
T COG1749 81 LDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNPAGL-YLQGYPANGVTGGINGGTTLLNIQIPNNNGLPAKAT 159 (423)
T ss_pred CCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCC-EEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCC
T ss_conf 3579916717999716898458886675017678867768873-797312468887511455533213345667676432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780685|r 138 -------------------------------------------------------------------------------- 137 (243)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (243)
T Consensus 160 t~~~~~~NL~~~~~~~~~~~~~n~~~~~~~~~~~s~~~yDs~G~~~~~~~~f~k~~~~tw~v~~~~~~~~~~p~g~a~~~ 239 (423)
T COG1749 160 TNVSFSANLNSGAIVPSITAPFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQTGDPDGTADTG 239 (423)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 06522101487775653467878765321145315999926895123567999447871269999435666888766666
Q ss_pred ---------------------------------------------------------------------CCCCCCCCCCC
Q ss_conf ---------------------------------------------------------------------00000024542
Q gi|254780685|r 138 ---------------------------------------------------------------------EIFNVGEKGEI 148 (243)
Q Consensus 138 ---------------------------------------------------------------------~~~~i~~dG~i 148 (243)
T Consensus 240 ~~~~l~Fd~~G~L~s~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~l~~~~I~~dG~I 319 (423)
T COG1749 240 TTFTLEFDPAGALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGNLKDYRIDEDGVI 319 (423)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEEEEEEEECCCCEE
T ss_conf 42578877988601278886434466656576300220453257754885130013456336755305778997799789
Q ss_pred C---CCC--CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCC----CCCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2---343--2112334545576134432025653456665-65434----566415624222140239999999999999
Q gi|254780685|r 149 S---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPP-TPLED----LSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 (243)
Q Consensus 149 ~---~~g--~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~----~~~~~v~qG~LE~SNVn~~~EMv~lI~~qR 218 (243)
T Consensus 320 ~~~ysNG~~~~~gqIaLa~F~N~~GL~~~ggN~~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVDls~EltnmIvaQR 399 (423)
T COG1749 320 VGVYSNGVTQPLGQIALANFANPQGLVKEGGNVYAATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTNLIVAQR 399 (423)
T ss_pred EEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHHH
T ss_conf 99971882646667887730480106215895785115678614446887873025016332112118999999888665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999998
Q gi|254780685|r 219 KFNSITTLIDENEKSMLEAIRN 240 (243)
Q Consensus 219 afe~~~k~i~~~de~~~~~in~ 240 (243)
T Consensus 400 ~YqANsK~i~T~D~mlq~lvnL 421 (423)
T COG1749 400 GYQANAKVITTSDQMLQTLVNL 421 (423)
T ss_pred HCCCCCCEEEEHHHHHHHHHHH
T ss_conf 0444550686058999999862