HHsearch alignment for GI: 254780685 and conserved domain: COG4786
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion].
Probab=100.00 E-value=0 Score=480.15 Aligned_cols=241 Identities=27% Similarity=0.474 Sum_probs=215.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC-------------CCCCCCCCCCCCC
Q ss_conf 913699999999999998799977543177711334678799997420467655-------------5532111100002
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-------------KISFVASGKEYLS 67 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 67 (243)
T Consensus 1 M~r~ly~a~sGM~aqq~kld~IsNNlANvNT~GfK~~~a~F~dll~q~~~~~~~~~~~~~~~p~~~~vg~Gv~~~~~~~~ 80 (265)
T COG4786 1 MLRGLYTAASGMMAQQRKLDVISNNLANVNTTGFKRDRAEFEDLLYQTINTAGAPNSNSTTSPSGGQVGLGVRVNETYTV 80 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEEEEE
T ss_conf 90578898778999998655652120237775504454506999999874268877666446655256654144247864
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 245554455640213432750244136763-1232112201565684541468853566454421000000000000245
Q gi|254780685|r 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 (243)
Q Consensus 68 ~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG 146 (243)
T Consensus 81 ~tqGsl~~T~n~lD~AI~g~gfF~I~~~dG~~~YTR~G~F~~d~~G~LVT~~G-~~vl~~~G~~i~i~~~~~~i~i~~dG 159 (265)
T COG4786 81 FTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVDEEGQLVTSNG-YPVLDSGGNPITIPNNAGSITIGKDG 159 (265)
T ss_pred CCCCCCEECCCCCCEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCC-CCCCCCCCCCEECCCCCEEEEECCCC
T ss_conf 04467410698543587478269998499878885277446889987880799-77457888724528874455532564
Q ss_pred CC--CCC----CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----CCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 42--234----3211233454557613443202565345666565----4345664156242221402399999999999
Q gi|254780685|r 147 EI--SQK----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 (243)
Q Consensus 147 ~i--~~~----g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~ 216 (243)
T Consensus 160 ~v~~~~~~~~~~~~~g~i~lv~f~n~~gL~k~G~nl~~~t~~sg~~~~~~~~~~~g~i~QG~lE~SNVn~v~EMt~mI~a 239 (265)
T COG4786 160 TVSVTIRGNTDPVQVGQIGLVNFDNPAGLKKIGNNLYQETAASGPIVGVPGDNGFGAIRQGFLEASNVNVVEEMTDMIEA 239 (265)
T ss_pred EEEEEECCCCCCEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHH
T ss_conf 47899658866147536889981380664330775310168877754677878755278641212056799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999853
Q gi|254780685|r 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 (243)
Q Consensus 217 qRafe~~~k~i~~~de~~~~~in~lg 242 (243)
T Consensus 240 qRayE~nsK~i~~~D~m~~~~~n~~~ 265 (265)
T COG4786 240 QRAYEANSKVIQTADEMLGKANNLLR 265 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999887886658999999986549