HHsearch alignment for GI: 254780685 and conserved domain: PRK05682
>PRK05682 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=390.07 Aligned_cols=235 Identities=24% Similarity=0.372 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 699999999999998799977543177711334678799997420467--655553211110000224555445564021
Q gi|254780685|r 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFVASGKEYLSKEVGSFISTGTELD 81 (243)
Q Consensus 4 ~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~l~~Tg~~lD 81 (243)
T Consensus 2 sl~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~~F~~~~~~~~~~~~~~~~g~Gv~~~~~~~~~~qG~~~~T~~~~D 81 (414)
T PRK05682 2 SFNTGVSGLNAASNDLDVIGNNIANANTTGFKESRAEFADLYANSSSSNSGSQVGLGVKTAGVAQQFTQGTITSTGNSLD 81 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEECCCCCE
T ss_conf 58899999999986016776778767753008775516786521256788874344178515887637778577798321
Q ss_pred EEECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCC---------------CCCCCCCCCCC---------
Q ss_conf 343275024413676312321122015656845414688535664---------------54421000000---------
Q gi|254780685|r 82 FALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM---------------ASVPIQIPQKD--------- 137 (243)
Q Consensus 82 ~Ai~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~---------------~g~pI~ip~~~--------- 137 (243)
T Consensus 82 ~ai~G~GfF~v~~~~~~~yTR~G~F~~d~~G~Lv~~~G~-~l~G~~~d~~~~~~~~~~~~~l~~I~i~~~~~~~~~Tt~~ 160 (414)
T PRK05682 82 LAISGNGFFVVSSNGSVFYTRAGAFKLDKNGYLVNAAGY-YLQGYPADADGGTPNGVQNANLVPLQIPTTALAPKATTTV 160 (414)
T ss_pred EEECCCCEEEECCCCCEEEEECCCEEECCCCEEECCCCC-EEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEE
T ss_conf 787377438864899568885561888558819859999-8870450478875443345774434604766786431057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780685|r 138 -------------------------------------------------------------------------------- 137 (243)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (243)
T Consensus 161 ~~~~NL~~~~~~~~~~~~~~~~~~~~~~~t~~~vyDs~G~~~~l~~~f~k~~~n~w~~~~~~~~~~~~~~~~~~~~~~~~ 240 (414)
T PRK05682 161 TFQGNLNSTAPVPAVTPFDPTDADTYNKSTSVTVYDSLGNSHTLDVYFVKTGDNTWQVYVYDDGKAVDGPTTPTGTAGTT 240 (414)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 66301477775666666677787653203459988689974899999996589806899974787656665545555656
Q ss_pred ------------------------------------------------------------CCCCCCCCCCCCC---CC--
Q ss_conf ------------------------------------------------------------0000002454223---43--
Q gi|254780685|r 138 ------------------------------------------------------------EIFNVGEKGEISQ---KG-- 152 (243)
Q Consensus 138 ------------------------------------------------------------~~~~i~~dG~i~~---~g-- 152 (243)
T Consensus 241 ~~~~l~F~~~G~l~~~~~~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~a~~sNG~~ 320 (414)
T PRK05682 241 TAGTLTFDSNGALTSFTIAINGGATPAGTLTLDLSGSTQQGTGFFNVSATTQDGYAPGTLTGVSIDDDGTVVATYSNGQT 320 (414)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCE
T ss_conf 54216876887242466655567787740687245640221466542211357722230466788899679999779957
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-CCCC----CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21123345455761344320256534566656-5434----566415624222140239999999999999999999999
Q gi|254780685|r 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPT-PLED----LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 (243)
Q Consensus 153 ~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~-~~~~----~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i 227 (243)
T Consensus 321 ~~l~qi~la~F~N~~gL~~~g~n~y~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~E~t~mI~~QRaYqANskvI 400 (414)
T PRK05682 321 KPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGAAGSGGFGTIQSGALESSNVDLTTELVDMIVAQRNYQANAKTI 400 (414)
T ss_pred EEEEEEEEEEECCHHHHHHHCCCEEECCCCCCCCEECCCCCCCCEEEEECCEEHHCCCHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 78768878862697897752497176411158753368998871248536405001779999999999987746740345
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780685|r 228 DENEKSMLEAIR 239 (243)
Q Consensus 228 ~~~de~~~~~in 239 (243)
T Consensus 401 tTsDemLq~lin 412 (414)
T PRK05682 401 KTQDQLLQTLVN 412 (414)
T ss_pred EEHHHHHHHHHH
T ss_conf 619999999972