HHsearch alignment for GI: 254780685 and conserved domain: PRK05841
>PRK05841 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=369.01 Aligned_cols=124 Identities=22% Similarity=0.429 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9136999999999999987999775431777113346787999974204676-------555532111100002245554
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------DQKISFVASGKEYLSKEVGSF 73 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~G~l 73 (243)
T Consensus 1 m~~SlysGVSGL~a~~~~ldvIgNNIANvnT~GfK~sr~~F~dl~sq~~~~~~~~~~~~~~~g~Gv~~~~~~~~~~qGsl 80 (605)
T PRK05841 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVANDRNYGVTGSGNVLSNKDGEY 80 (605)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf 91788899999999875442330243416762115553537876654304466777656753566587777887046664
Q ss_pred CCCCCEEEEEECCCCEEEECCCC---------------CEEEEECCCCEECCCCCEECCCCCCCCCC
Q ss_conf 45564021343275024413676---------------31232112201565684541468853566
Q gi|254780685|r 74 ISTGTELDFALEGDAWFALESPR---------------GIILTRDGRFKVTDDGSLVSASGKYPVLD 125 (243)
Q Consensus 74 ~~Tg~~lD~Ai~G~GfF~V~~~~---------------g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~ 125 (243)
T Consensus 81 ~~T~~~tDlAI~G~GFF~V~~~~~g~~~~~~~g~~~~~~~~YTRaG~F~~D~~G~LV~~~G~-~vqG 146 (605)
T PRK05841 81 MPSEGEFHMAYQGKGWFVIGPNKNGEFTINKDGFSKKQDNFLTRAGNFARDADGYLVTPEGY-YVYG 146 (605)
T ss_pred EECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCC-EEEC
T ss_conf 75698404898177179862278874111466556556624723777538999978879988-7977