HHsearch alignment for GI: 254780685 and conserved domain: PRK12628
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=99.72 E-value=1.1e-16 Score=117.93 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=41.6
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24222140239999999999999999999999999999999999
Q gi|254780685|r 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 (243)
Q Consensus 196 qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~in 239 (243)
T Consensus 94 ~GyV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~ 137 (140)
T PRK12628 94 DGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQ 137 (140)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98673489888999999999999999999999999999999986