HHsearch alignment for GI: 254780685 and conserved domain: PRK12630

>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=99.73  E-value=6.9e-17  Score=119.05  Aligned_cols=133  Identities=21%  Similarity=0.315  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             91369999999999999879997754317771------133467879999742046765555321111000022455544
Q gi|254780685|r    1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI   74 (243)
Q Consensus         1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~------GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~   74 (243)
T Consensus         3 ~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~~g~pYrrk~~vf~~~~~~~~~~-----------------~~~~~~   65 (143)
T PRK12630          3 AFDSMRISASGLSAERLRMDTIASNISNASTTRTANGGPYRRKIAVFQENLNNELNK-----------------KNGAYE   65 (143)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-----------------CCCCCC
T ss_conf             255786999999999999999998765358889999986644411254766665420-----------------145555


Q ss_pred             CCCCEEEEEECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             55640213432750244136763123211220156568454146885356645442100000000000024542234321
Q gi|254780685|r   75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV  154 (243)
Q Consensus        75 ~Tg~~lD~Ai~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g~~  154 (243)
T Consensus        66 ~----------------------------------------~~~g-----------V~v------~~i~~d------~~p   82 (143)
T PRK12630         66 K----------------------------------------KLYG-----------VKA------VGIVED------KSP   82 (143)
T ss_pred             C----------------------------------------CCCC-----------EEE------EEEECC------CCC
T ss_conf             6----------------------------------------7776-----------377------556548------985


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12334545576134432025653456665654345664156242221402399999999999999999999999999999
Q gi|254780685|r  155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM  234 (243)
Q Consensus       155 v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~  234 (243)
T Consensus        83 --~~~~YdP~hP~-------------------AD------~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~  135 (143)
T PRK12630         83 --LRKVYDPSHPD-------------------AD------EEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMF  135 (143)
T ss_pred             --CCCEECCCCCC-------------------CC------CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --00112899999-------------------78------7988846898889999999999999999999999999999


Q ss_pred             HHHHHH
Q ss_conf             999998
Q gi|254780685|r  235 LEAIRN  240 (243)
Q Consensus       235 ~~~in~  240 (243)
T Consensus       136 ~~tL~i  141 (143)
T PRK12630        136 SKALEI  141 (143)
T ss_pred             HHHHHH
T ss_conf             999985