HHsearch alignment for GI: 254780685 and conserved domain: PRK12630
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=99.73 E-value=6.9e-17 Score=119.05 Aligned_cols=133 Identities=21% Similarity=0.315 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 91369999999999999879997754317771------133467879999742046765555321111000022455544
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~------GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~ 74 (243)
T Consensus 3 ~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~~g~pYrrk~~vf~~~~~~~~~~-----------------~~~~~~ 65 (143)
T PRK12630 3 AFDSMRISASGLSAERLRMDTIASNISNASTTRTANGGPYRRKIAVFQENLNNELNK-----------------KNGAYE 65 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-----------------CCCCCC
T ss_conf 255786999999999999999998765358889999986644411254766665420-----------------145555
Q ss_pred CCCCEEEEEECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55640213432750244136763123211220156568454146885356645442100000000000024542234321
Q gi|254780685|r 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 (243)
Q Consensus 75 ~Tg~~lD~Ai~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g~~ 154 (243)
T Consensus 66 ~----------------------------------------~~~g-----------V~v------~~i~~d------~~p 82 (143)
T PRK12630 66 K----------------------------------------KLYG-----------VKA------VGIVED------KSP 82 (143)
T ss_pred C----------------------------------------CCCC-----------EEE------EEEECC------CCC
T ss_conf 6----------------------------------------7776-----------377------556548------985
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12334545576134432025653456665654345664156242221402399999999999999999999999999999
Q gi|254780685|r 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 (243)
Q Consensus 155 v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~ 234 (243)
T Consensus 83 --~~~~YdP~hP~-------------------AD------~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~ 135 (143)
T PRK12630 83 --LRKVYDPSHPD-------------------AD------EEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMF 135 (143)
T ss_pred --CCCEECCCCCC-------------------CC------CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --00112899999-------------------78------7988846898889999999999999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780685|r 235 LEAIRN 240 (243)
Q Consensus 235 ~~~in~ 240 (243)
T Consensus 136 ~~tL~i 141 (143)
T PRK12630 136 SKALEI 141 (143)
T ss_pred HHHHHH
T ss_conf 999985