HHsearch alignment for GI: 254780685 and conserved domain: PRK12641
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=0 Score=416.67 Aligned_cols=231 Identities=22% Similarity=0.334 Sum_probs=186.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 91369999999999999879997754317771133467879999742046765555321111000022455544556402
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~l 80 (243)
T Consensus 1 M~r~lY~a~sgm~a~q~~ldvisNNLANvnT~GfK~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~qG~l~~Tg~~l 76 (252)
T PRK12641 1 MESIIYASMTAANKLLEKQARIANNLANISTPGFKEEFELKILLPNQK-N---LNSQEDNFLKEYYNKNPGTLRRTNRNL 76 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-C---CCCCCCCCCCCEEECCCCCEECCCCCE
T ss_conf 935899999999999998899999998787765506389887644213-4---566665324321214874610169810
Q ss_pred EEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
Q ss_conf 13432750244136763-123211220156568454146885356645442100000000000024542234--------
Q gi|254780685|r 81 DFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------- 151 (243)
Q Consensus 81 D~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~-------- 151 (243)
T Consensus 77 DlAI~G~GfF~v~~~~G~~~YTR~G~F~ld~~G~L~~~-~-~~vl~~~g-~i~~p~~-~~~~i~~dG~i~~~~~~~~~~~ 152 (252)
T PRK12641 77 DLIIKKNGWLVIKDDNGQEAYTKNGHFKINSNRKLTVQ-N-HEVIGNNG-NIFIPKN-ENLKISSNGYINIIKNNHKHIL 152 (252)
T ss_pred EEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEEC-C-CEEECCCC-CEECCCC-CCEEECCCCEEEEECCCCCCCC
T ss_conf 28985897699977999678997254789899988979-9-71517898-7027999-7268889955999407987543
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-------CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 321123345455761344320256534566656-------5434566415624222140239999999999999999999
Q gi|254780685|r 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 (243)
Q Consensus 152 g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~ 224 (243)
T Consensus 153 ~~~vg~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVd~~~EM~~lI~~qRaye~n~ 231 (252)
T PRK12641 153 EHKIGSLKLVNLDIND-LIQKENGLFYLKKNNKLNHTNHKNIKHSSNIRLQSGMLEDSNVNLEKNMIEMISNARQFEMQM 231 (252)
T ss_pred CEEEEEEEEEECCCHH-HHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 2155369997047533-321578832415776556666777777877248626400244669999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999985
Q gi|254780685|r 225 TLIDENEKSMLEAIRNI 241 (243)
Q Consensus 225 k~i~~~de~~~~~in~l 241 (243)
T Consensus 232 K~i~~~Dem~~~a-n~L 247 (252)
T PRK12641 232 KIISMCDQNTEYA-NQL 247 (252)
T ss_pred HHHHHHHHHHHHH-HHH
T ss_conf 9999999999999-987