HHsearch alignment for GI: 254780685 and conserved domain: PRK12642
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=0 Score=483.52 Aligned_cols=239 Identities=41% Similarity=0.763 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 91369999999999999879997754317771133467879999742046765555321111000022455544556402
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~l 80 (243)
T Consensus 1 M~~~lY~a~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~---~~~~~~~~~~~~~~~~~~qG~l~~Tg~~l 77 (241)
T PRK12642 1 MQSGLYVALSSQMALEKRLDTIADNVANANTVGFRAEEVKFDTIVSNK---ASTDVSFASAGKSYISTEAGPLTKTGNPL 77 (241)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHCC---CCCCCCCCCCCCCEECCCCCCEEECCCCC
T ss_conf 905899999999999984688988898777653373624468886034---77874201477412215887846669831
Q ss_pred EEEECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13432750244136763123211220156568454146885356645442100000000000024542234321123345
Q gi|254780685|r 81 DFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 (243)
Q Consensus 81 D~Ai~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g~~v~~l~l 160 (243)
T Consensus 78 D~AI~G~GFF~V~~~~g~~yTR~G~F~~~~~G~Lvt~~G-~~vL~~~g~pI~v~p~~~~~~I~~dG~i~~~~~~vg~i~l 156 (241)
T PRK12642 78 DVAVKGDAWFSFDTPAGQVYTRDGRFTMLETGELVSVTG-YPVLDAGGAPIQLNPGGGPPRIGADGAIYQNGVQVGALGL 156 (241)
T ss_pred EEEECCCCEEEEECCCCCEEEECCCEEECCCCCEECCCC-CEEECCCCCCEEECCCCCEEEECCCCEEEECCEEEEEEEE
T ss_conf 399848836999659985788616488989998895899-8914799985597899851898379619538878888899
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45576134432025653456665654345664156242221402399999999999999999999999999999999998
Q gi|254780685|r 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 (243)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~in~ 240 (243)
T Consensus 157 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVd~~~EM~~lI~~qRafe~~~k~i~~~D~~l~~ai~~ 236 (241)
T PRK12642 157 FEIPADAGLARYGNSGVIPDKPAQPVVDRNSVGVVQGYLEGSNVNAMTEMTRLISVSRAFESVSSLMRDSESSVSEAIKT 236 (241)
T ss_pred EECCCCCCCEECCCCCEEECCCCCCCCCCCCCCEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 94379500326478753507888766578887177574103306299999999999999999999999999999999998
Q ss_pred HCC
Q ss_conf 539
Q gi|254780685|r 241 IAS 243 (243)
Q Consensus 241 lgs 243 (243)
T Consensus 237 lG~ 239 (241)
T PRK12642 237 LGS 239 (241)
T ss_pred HCC
T ss_conf 735