HHsearch alignment for GI: 254780685 and conserved domain: PRK12690
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=0 Score=482.12 Aligned_cols=236 Identities=31% Similarity=0.554 Sum_probs=215.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 91369999999999999879997754317771133467879999742046765555321111000022455544556402
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~l 80 (243)
T Consensus 1 M~~~~Yta~sg~~a~~~~ldviaNNlANvnT~GfK~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~d~~qG~l~~Tg~~l 78 (237)
T PRK12690 1 MDAAGYTTLTRQSGLMREMQVVANNIANSSTTGFRREGLVFSEYVKSTGGE--ASLSMASAGARQTSLEQGGLTQTGGQF 78 (237)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCC--CCCCCCCCCCEEEECCCCCEEECCCCC
T ss_conf 916899999999999986788988998777743272634489998624788--763313466346541776845569821
Q ss_pred EEEECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13432750244136763123211220156568454146885356645442100000000000024542234321123345
Q gi|254780685|r 81 DFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 (243)
Q Consensus 81 D~Ai~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g~~v~~l~l 160 (243)
T Consensus 79 DlAI~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G-~~VL~~~g~pI~ip~~~~~~~I~~dG~i~~~~~~vg~l~l 157 (237)
T PRK12690 79 DLAIEGEGFFMVETPQGERLTRAGAFTPNAEGELVTPDG-YRLLDAGGAPIFIPPDARSVAVGADGTISADGQPLGQVGL 157 (237)
T ss_pred EEEECCCCEEEEEECCCCEEEECCCEEECCCCCEECCCC-CEEECCCCCCEEECCCCCEEEECCCCEEEECCEEEEEEEE
T ss_conf 599858957999807983699736278989988893899-8915799983483799853799899709658868788889
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45576134432025653456665654345664156242221402399999999999999999999999999999999998
Q gi|254780685|r 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 (243)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~in~ 240 (243)
T Consensus 158 ~~~~~~~~L~~~g~~~~~~~~~~~~~---~~~~v~qG~LE~SNVn~~~EMv~mI~~qR~fe~~~k~i~~~De~~~~ain~ 234 (237)
T PRK12690 158 FQPDDPLGLRREGGTRFRAEGGVEPA---EGASLLQGFLEGSNVNPILEIARMIEVQRAYELGQSFLDAEDDRIRQTIRT 234 (237)
T ss_pred EECCCHHHHEECCCCEECCCCCCCCC---CCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 81278377057789457278887877---787487352101226899999999999999999989999999999999998
Q ss_pred HC
Q ss_conf 53
Q gi|254780685|r 241 IA 242 (243)
Q Consensus 241 lg 242 (243)
T Consensus 235 lG 236 (237)
T PRK12690 235 LG 236 (237)
T ss_pred HC
T ss_conf 56