HHsearch alignment for GI: 254780685 and conserved domain: PRK12694
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=449.87 Aligned_cols=234 Identities=23% Similarity=0.358 Sum_probs=201.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC-------------CCCCCCCCCCCCCC
Q ss_conf 91369999999999999879997754317771133467879999742046765-------------55532111100002
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------------QKISFVASGKEYLS 67 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 67 (243)
T Consensus 1 M~~~lY~a~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~ 80 (260)
T PRK12694 1 MNRSLWIAKTGLNAQQAQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQSTQQTELPSGLQLGTGVRQVATERL 80 (260)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEEEE
T ss_conf 92589999999999998488998889877776556472309999887631567665655557765200342166678875
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 245554455640213432750244136763-1232112201565684541468853566454421000000000000245
Q gi|254780685|r 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 (243)
Q Consensus 68 ~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG 146 (243)
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G-~~vl~----~i~ip~~~~~i~i~~dG 155 (260)
T PRK12694 81 FTQGNLQQTGNSKDVAINGQGFFQVLMPDGTTAYTRDGSFQTNAQGQLVTSSG-YPLQP----AITIPQNATSLTIGKDG 155 (260)
T ss_pred CCCCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEECCCC-CEEEC----CCCCCCCCCEEEECCCC
T ss_conf 16787131698312898589578885589957488766468999998882899-88740----55348886057875786
Q ss_pred CCCC------CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-----CCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 4223------4321123345455761344320256534566656543-----4566415624222140239999999999
Q gi|254780685|r 147 EISQ------KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIH 215 (243)
Q Consensus 147 ~i~~------~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~v~qG~LE~SNVn~~~EMv~lI~ 215 (243)
T Consensus 156 ~i~~~~~g~~~~~~vg~l~l~~f~n~~~L~~~G~~l~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNVd~~~Emv~mI~ 235 (260)
T PRK12694 156 TVSVTQPGSSNAVQIGQLQLATFINPAGLQAKGENLFAETTSSGAPNVSQPGLNGAGTLKQGYVEASNVNVVEELVNMIQ 235 (260)
T ss_pred EEEEECCCCCCCEEEEEEEEEEECCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHH
T ss_conf 08885179865314468999850371664205897312036778875466787873168448675214639999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254780685|r 216 LTQKFNSITTLIDENEKSMLEAIR 239 (243)
Q Consensus 216 ~qRafe~~~k~i~~~de~~~~~in 239 (243)
T Consensus 236 ~qRaye~~~k~i~t~De~l~~~~q 259 (260)
T PRK12694 236 TQRAYEINSKAVTTSDQMLQRLTQ 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999998899999999999866