HHsearch alignment for GI: 254780685 and conserved domain: PRK12818
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=448.67 Aligned_cols=236 Identities=24% Similarity=0.364 Sum_probs=204.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHCCC----------CCCCCCCCCCCCCCCC
Q ss_conf 913699999999999998799977543177711334678---799997420467----------6555532111100002
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND----------IDQKISFVASGKEYLS 67 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~---~F~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 67 (243)
T Consensus 1 M~~~ly~a~sgm~a~~~~ldviaNNlAN~nT~GfK~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (255)
T PRK12818 1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIENYDKKVGNKNIKNIIGGLSMGSKIDEVNTL 80 (255)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 96689999999999998778998999877756448585006568999864104446786666644541452264356764
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCCCCC-----CCCCCCCCCCCCC
Q ss_conf 24555445564021343275024413676312321122015656845414688535664544-----2100000000000
Q gi|254780685|r 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASV-----PIQIPQKDEIFNV 142 (243)
Q Consensus 68 ~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~-----pI~ip~~~~~~~i 142 (243)
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~g~~~yTR~G~f~vd~~G~Lvt~~G-~~vLg~~~~~~~~~pi~~~--~~~i~i 157 (255)
T PRK12818 81 FTQGIIKSTDKPTDFAIQGRGFFTVERNGRNYYTRDGHFHVDTQGYLVNDSG-YYVMGINNATGAREPIYVG--NKKFST 157 (255)
T ss_pred CCCCCEEECCCCCEEEECCCCEEEEECCCCEEEEECCCEEECCCCCEECCCC-CEEECCCCCCCCCCCEECC--CCCEEE
T ss_conf 2787845459810499869858999559965899756577989976892899-8920788887775665148--980898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02454223432112334545576134432025653456665654345664156242221402399999999999999999
Q gi|254780685|r 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 (243)
Q Consensus 143 ~~dG~i~~~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~ 222 (243)
T Consensus 158 ~~dG~i~~~~~~~~~l~~~~~~~~~~L~~~G~~lf~~~~---~-~~~~~~~v~qG~LE~SNVn~~~EM~~mI~~qRafe~ 233 (255)
T PRK12818 158 DASGNISLDGVPSYKFQVADFNDYNSLKKIGDNLYSGNN---P-INNNGAIVRQNSLEKSNVNVTNEMVNMMTTMRSFET 233 (255)
T ss_pred CCCCEEEECCCCCEEEEEEECCCHHHCEECCCCCCCCCC---C-CCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 898259855754126899814880436376887513798---7-757773387264100126899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999998539
Q gi|254780685|r 223 ITTLIDENEKSMLEAIRNIAS 243 (243)
Q Consensus 223 ~~k~i~~~de~~~~~in~lgs 243 (243)
T Consensus 234 ~~k~i~t~De~~~~a~n~lg~ 254 (255)
T PRK12818 234 NQKIVQSIDETLGKAVNEVGS 254 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999997436