HHsearch alignment for GI: 254780685 and conserved domain: TIGR02489
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=9.4e-35 Score=224.45 Aligned_cols=131 Identities=28% Similarity=0.413 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC----C---------CCCCCCCCCCCCCC
Q ss_conf 9136999999999999987999775431777113346787999974204676----5---------55532111100002
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----D---------QKISFVASGKEYLS 67 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~----~---------~~~~~~~~~~~~~~ 67 (243)
T Consensus 1 MlRSLWSGVsgmQAHQvAlDVEgNNIaNVNTtGFKYSRA~F~dMlSQ~~~IATsPy~nGlGGQNd~~iGLGvsi~sTTki 80 (877)
T TIGR02489 1 MLRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQVKKIATSPYDNGLGGQNDLSIGLGVSIDSTTKI 80 (877)
T ss_pred CCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHEEEECCCCCCCCCCCCCEECCEECCCCCEEE
T ss_conf 95101113101102013331044640331345500430431124244000230757877878775300121000442148
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEECCCCCE--EEEECCCCEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 2455544556402134327502441367631--2321122015656845414688535664544210
Q gi|254780685|r 68 KEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 (243)
Q Consensus 68 ~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g~--~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ 132 (243)
T Consensus 81 fsQGs~Q~T~~ktDvAI~GDGFFivS~dgG~Tn~yTRdGaF~fDA~GN~Vnn~G-yiVQGW~rP~L~ 146 (877)
T TIGR02489 81 FSQGSVQDTNSKTDVAIEGDGFFIVSDDGGLTNAYTRDGAFKFDAAGNLVNNSG-YIVQGWVRPDLE 146 (877)
T ss_pred EECCCEECCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCC-EEEECCCCCCCC
T ss_conf 534853036775107886835599808888425532277300244554030374-278775168734