HHsearch alignment for GI: 254780685 and conserved domain: TIGR02489

>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00  E-value=9.4e-35  Score=224.45  Aligned_cols=131  Identities=28%  Similarity=0.413  Sum_probs=114.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC----C---------CCCCCCCCCCCCCC
Q ss_conf             9136999999999999987999775431777113346787999974204676----5---------55532111100002
Q gi|254780685|r    1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----D---------QKISFVASGKEYLS   67 (243)
Q Consensus         1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~----~---------~~~~~~~~~~~~~~   67 (243)
T Consensus         1 MlRSLWSGVsgmQAHQvAlDVEgNNIaNVNTtGFKYSRA~F~dMlSQ~~~IATsPy~nGlGGQNd~~iGLGvsi~sTTki   80 (877)
T TIGR02489         1 MLRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQVKKIATSPYDNGLGGQNDLSIGLGVSIDSTTKI   80 (877)
T ss_pred             CCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHEEEECCCCCCCCCCCCCEECCEECCCCCEEE
T ss_conf             95101113101102013331044640331345500430431124244000230757877878775300121000442148


Q ss_pred             CCCCCCCCCCCEEEEEECCCCEEEECCCCCE--EEEECCCCEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf             2455544556402134327502441367631--2321122015656845414688535664544210
Q gi|254780685|r   68 KEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ  132 (243)
Q Consensus        68 ~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g~--~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~  132 (243)
T Consensus        81 fsQGs~Q~T~~ktDvAI~GDGFFivS~dgG~Tn~yTRdGaF~fDA~GN~Vnn~G-yiVQGW~rP~L~  146 (877)
T TIGR02489        81 FSQGSVQDTNSKTDVAIEGDGFFIVSDDGGLTNAYTRDGAFKFDAAGNLVNNSG-YIVQGWVRPDLE  146 (877)
T ss_pred             EECCCEECCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCC-EEEECCCCCCCC
T ss_conf             534853036775107886835599808888425532277300244554030374-278775168734