>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.

Probab=100.00 E-value=0 Score=417.78 Aligned_cols=220 Identities=26% Similarity=0.417 Sum_probs=198.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 36999999999999987999775431777113346787999974204676555532111100002245554455640213 Q gi|254780685|r 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 (243) Q Consensus 3 ~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~lD~ 82 (243) T Consensus 1 ~sly~a~sgm~a~~~~l~visnNlAN~nT~GfK~~~~~F~~~~~~~~~~~~~~~~gv~~~~~~~~~~qG~l~~Tg~~lDl 80 (231) T TIGR03506 1 MALYTALSGLNAQSKALDVIANNIANANTTGFKASRAEFSDLLAQSGSGSGQVGGGVRAAAVGTDFSQGSLQTTGNPLDL 80 (231) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEECCCCCEE T ss_conf 94899999999999867888888887776443547241788752347887755545784156876388882566883218 Q ss_pred EECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC Q ss_conf 432750244136763-12321122015656845414688535664544210000000000002454223-----432112 Q gi|254780685|r 83 ALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIA 156 (243) Q Consensus 83 Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~-----~g~~v~ 156 (243) T Consensus 81 AI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lv~~~G-~~vlg~~g~~~~~~~~~~~~~i~~dG~i~~~~~~~~~~~v~ 159 (231) T TIGR03506 81 AINGDGFFAVQTPDGSEAYTRAGSFQLDANGYLVTADG-YPLLGWGGGPITIPPDAAGVEIGEDGTVSATYSNGQTQEVG 159 (231) T ss_pred EECCCEEEEEECCCCCEEEEECCCEEECCCCCEECCCC-CEEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEE T ss_conf 98696389998899978487645378989998887899-88077788876457777416987895399850799715878 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-----CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 334545576134432025653456665654-----3456641562422214023999999999999999999 Q gi|254780685|r 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 (243) Q Consensus 157 ~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~ 223 (243) T Consensus 160 ~i~l~~~~~~~~L~~~g~~~~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~em~~mi~~qR~fe~N 231 (231) T TIGR03506 160 QLALVNFPNPNGLQKEGGNLFRATDGSGAPLVGAPGTGGLGSLVQGALEGSNVDAVAEMVDMISAQRAYEAN 231 (231) T ss_pred EEEEEECCCHHHCEECCCCEEEECCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHCCC T ss_conf 999995068688158589679844777775235678888236970732620265999999999997756089

HHsearch alignment for GI: 254780685 and conserved domain: TIGR03506