HHsearch alignment for GI: 254780685 and conserved domain: pfam06429
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=98.83 E-value=5.1e-09 Score=72.66 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40239999999999999999999999999999999999
Q gi|254780685|r 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 (243)
Q Consensus 202 SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~in 239 (243)
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~ 38 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLN 38 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98878999999999999989999999889999999876