HHsearch alignment for GI: 254780685 and conserved domain: pfam06429

>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=98.83  E-value=5.1e-09  Score=72.66  Aligned_cols=38  Identities=16%  Similarity=0.278  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40239999999999999999999999999999999999
Q gi|254780685|r  202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR  239 (243)
Q Consensus       202 SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~in  239 (243)
T Consensus         1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~   38 (39)
T pfam06429         1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLN   38 (39)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98878999999999999989999999889999999876