BLAST/PSIBLAST alignment of GI: 254780685 and GI: 116250476 at iteration 1
>gi|116250476|ref|YP_766314.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. viciae 3841] Length = 244
>gi|115255124|emb|CAK06198.1| putative flagella associated protein [Rhizobium leguminosarum bv. viciae 3841] Length = 244
 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 163/242 (67%), Gaps = 1/242 (0%)

Query: 1   MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60
           MQ+   + L++Q+ALE+RL+T+ADNM+N +T GFR  +VKF E+V A +N ++ K++FV+
Sbjct: 1   MQSGLYVSLSSQMALEKRLTTIADNMANVNTTGFRATEVKFDEMVAATRNKLNTKVAFVS 60

Query: 61  SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120
            G +YL++  G    TG  LDFA++GDAWFAL++P G +LTRDGRF + D G LVS  G 
Sbjct: 61  QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGQVLTRDGRFTIKDTGELVSIRG- 119

Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180
           YPVLD    PIQ+        VG  G I Q G+ I ++GL+  D+S+G++R ENSGI   
Sbjct: 120 YPVLDAGGAPIQLNTTGGEPAVGTDGIIYQGGRQIGSLGLFEADVSKGYLRYENSGIMTT 179

Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240
             P  + D   V V++G+LE+SN N+M E+ Q+I + + F S+++L+ ++E S  EA++ 
Sbjct: 180 EQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESVSSLMRDSEDSFKEAVQT 239

Query: 241 IA 242
           + 
Sbjct: 240 LG 241