BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] (243 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] gi|254040362|gb|ACT57158.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/243 (100%), Positives = 243/243 (100%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA Sbjct: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK Sbjct: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN Sbjct: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN Sbjct: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 Query: 241 IAS 243 IAS Sbjct: 241 IAS 243 >gi|315121852|ref|YP_004062341.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495254|gb|ADR51853.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 243 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/243 (74%), Positives = 214/243 (88%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+SFNIGL+AQ+ALE+RLSTVADN+SN++T GFR IKVKFSEV+ +IKNDIDQKISFVA Sbjct: 1 MQSSFNIGLSAQIALEKRLSTVADNISNSNTSGFRAIKVKFSEVINSIKNDIDQKISFVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G EYLSK+ GS +TG ELDFALEGDAWF+L++PRGIILTRDGRFK+ +DG+L+S+SG+ Sbjct: 61 QGNEYLSKQNGSLTNTGGELDFALEGDAWFSLQTPRGIILTRDGRFKIREDGTLISSSGR 120 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLDM PI IP KDE F VGE+GEISQKGK IA MG YS D+S+GFVRRENSGI PN Sbjct: 121 YPVLDMEGAPIHIPHKDEAFEVGEEGEISQKGKKIAAMGFYSADLSKGFVRRENSGIFPN 180 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 IPP P+ D S +TVKRG++EDSNANSMYEMGQMIHLTQKFNSIT LID+++KS LEAI+N Sbjct: 181 IPPVPVLDPSDITVKRGYIEDSNANSMYEMGQMIHLTQKFNSITELIDDSDKSFLEAIKN 240 Query: 241 IAS 243 + S Sbjct: 241 LVS 243 >gi|222084859|ref|YP_002543388.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722307|gb|ACM25463.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 244 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 166/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+TVADNM+N +T GFR +VKF++V+ +N ++ K++FV+ Sbjct: 1 MQSGIYVSLSSQMALERRLTTVADNMANVNTTGFRGTEVKFNQVLSNTENKLNAKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YLS G +TG LDFA++G+AWF L +P G++LTRDGRF +TD G+LVSA G Sbjct: 61 QGNDYLSTSNGELQNTGNLLDFAVKGEAWFGLNTPAGLVLTRDGRFTMTDSGALVSARG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ V G I+Q K + +GLY+ D+S+GF+R NSG+ P Sbjct: 120 YPVLDPGGAPIQLDPTGGAPTVSSNGTITQNDKQVGQIGLYTSDVSKGFLRYNNSGVLPT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D S + V +G+LE+SN N + EM ++I +++ F++IT+L + +E ++ EAI+ Sbjct: 180 DTPQPVIDRSNIGVAQGYLENSNVNGLREMTELIEVSRAFDNITSLTNSSESTLSEAIKT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|218461633|ref|ZP_03501724.1| flagellar basal body rod protein FlgF [Rhizobium etli Kim 5] Length = 244 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 165/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWFAL++P G +LTRDGRF + D G LVS G Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIKDTGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q G+ + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLDTKAGEPAVGTDGVIYQTGRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESISSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|325291945|ref|YP_004277809.1| flagellar basal body rod protein FlgF [Agrobacterium sp. H13-3] gi|325059798|gb|ADY63489.1| flagellar basal body rod protein FlgF [Agrobacterium sp. H13-3] Length = 244 Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 163/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T++DNM+N +TVGFR +VKF E+V ND++ K++FV+ Sbjct: 1 MQSGLYVALSSQIALERRLTTISDNMANANTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YLS G+F TG DFA++GDAWFA+++P G IL+RDGRF + DG+L+S+SG Sbjct: 61 QGNDYLSTRQGAFEQTGNSFDFAIKGDAWFAMDTPDGQILSRDGRFTMRPDGALISSSG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ V G I Q ++AT+G++ D S+GF+R NSG+ P Sbjct: 120 YPVLDAGGGPIQLNANGGPITVSLDGAIRQNDNIVATLGVFQADFSKGFLRHPNSGVKPV 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 PPTP+ + V V +G+LE SN N + +M Q+I + + F SI++L+ + E + +AI+ Sbjct: 180 APPTPVVNNHEVGVVQGYLEQSNVNGISQMTQLIQVNRAFESISSLMRDTESTFGDAIKT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|218673219|ref|ZP_03522888.1| flagellar basal body rod protein FlgF [Rhizobium etli GR56] Length = 244 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 165/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWF+L++P G +LTRDGRF + + G LVS G Sbjct: 61 QGNDYLNEQSGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTIKETGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q G+ + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLDTKAGEPAVGTDGVIYQAGRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESISSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|241203100|ref|YP_002974196.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856990|gb|ACS54657.1| flagellar basal-body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL++ G TG LDFA++GDAWFAL++P G +LTRDGRF + D G LVS G Sbjct: 61 QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIKDTGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q + +A++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLNTKGGEPAVGTDGIIYQADRQVASLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F S+++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESVSSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|327193031|gb|EGE59943.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512] Length = 244 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 165/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWF+L++P G +LTRDGRF + + G LVS G Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTLKETGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q G+ + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLDTKAGEPAVGTDGIIYQAGRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRSFESISSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|190890357|ref|YP_001976899.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|190695636|gb|ACE89721.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] Length = 244 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 165/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWF+L++P G +LTRDGRF + + G LVS G Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTLKETGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YP+LD PIQ+ K VG G I Q G+ + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPILDAGGAPIQLDTKAGEPAVGTDGIIYQAGRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRSFESISSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|116250476|ref|YP_766314.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. viciae 3841] gi|115255124|emb|CAK06198.1| putative flagella associated protein [Rhizobium leguminosarum bv. viciae 3841] Length = 244 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 163/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A +N ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLTTIADNMANVNTTGFRATEVKFDEMVAATRNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL++ G TG LDFA++GDAWFAL++P G +LTRDGRF + D G LVS G Sbjct: 61 QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGQVLTRDGRFTIKDTGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G+ I ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLNTTGGEPAVGTDGIIYQGGRQIGSLGLFEADVSKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F S+++L+ ++E S EA++ Sbjct: 180 EQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESVSSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|86356306|ref|YP_468198.1| flagellar basal body rod protein FlgF [Rhizobium etli CFN 42] gi|86280408|gb|ABC89471.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 244 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 164/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWFAL++P G +LTRDGRF + + G LVS G Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIRETGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q + + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLDTKAGEPAVGSDGIIYQGDRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S +A++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESISSLMRDSEDSFKQAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|15964409|ref|NP_384762.1| flagellar basal body rod protein FlgF [Sinorhizobium meliloti 1021] gi|307311551|ref|ZP_07591192.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti BL225C] gi|17380373|sp|O54248|FLGF_RHIME RecName: Full=Flagellar basal-body rod protein flgF gi|15073586|emb|CAC45228.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021] gi|306899568|gb|EFN30197.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti BL225C] Length = 241 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 110/241 (45%), Positives = 165/241 (68%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N++TVGFR +VKF++V+G K K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTK---PTKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+E+LS + G+ TG+ LDFA++GDAWF++++P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEFLSTKTGALARTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G IA +GLY D S+GF+R +NS + P Sbjct: 117 YPVLDAGGAPIQLNGGAGEIAVGADGAIHQNGVQIALLGLYEADFSKGFMRYDNSSVMPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ +AI Sbjct: 177 AQPEPVVDRFDVGVMQGFLEESNVNAIQEMSQLIMITRAFDNVTALMRDSEGSLDKAIET 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|209547922|ref|YP_002279839.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533678|gb|ACI53613.1| flagellar basal body rod protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 163/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL++ G TG LDFA++GDAWF+L++P G +LTRDGRF + D G LVS G Sbjct: 61 QGNDYLNESNGELQHTGNMLDFAIKGDAWFSLDTPAGRVLTRDGRFTLKDTGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q + + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLNSKGGEPAVGTDGIIYQGDRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F S+++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESVSSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|15887904|ref|NP_353585.1| flagellar basal body rod protein FlgF [Agrobacterium tumefaciens str. C58] gi|2459708|gb|AAB71784.1| FlgF [Agrobacterium tumefaciens] gi|15155496|gb|AAK86370.1| flagellar basal body rod protein [Agrobacterium tumefaciens str. C58] Length = 244 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T++DNM+N +TVGFR +VKF E+V ND++ K++FV+ Sbjct: 1 MQSGLYVALSSQIALERRLTTISDNMANVNTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YLS G+F TG DFA++GDAWFAL++P G ILTRDGRF + DG+L+S+SG Sbjct: 61 QGNDYLSTRQGAFEQTGNSFDFAIKGDAWFALDTPDGQILTRDGRFTMRPDGALISSSG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PI++ VG G I Q + A++G++ D S+GF+R NSG+ P Sbjct: 120 YPVLDAGGGPIRLNPNGGPITVGLDGAIRQNDTIAASLGIFQADFSKGFLRHPNSGVKPV 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ + V V +G+LE SN N + +M Q+I + + F SI++++ + E + E I+ Sbjct: 180 AQPVPVVNNHEVGVVQGYLEQSNVNGISQMTQLIQVNRAFESISSMMRDTESTFGEGIKT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|227820852|ref|YP_002824822.1| flagellar basal body rod protein FlgF [Sinorhizobium fredii NGR234] gi|227339851|gb|ACP24069.1| Flagellar basal-body rod protein FlgF [Sinorhizobium fredii NGR234] Length = 241 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 162/242 (66%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N +TVGFR+ +VKF +V+G K K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANANTVGFRSTEVKFDQVLGDTK---PSKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+EYL+ G+ TG+ LDFA++G+AWF +++P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEYLNTGNGALARTGSALDFAIKGNAWFNIDTPGGPALTRDGRFTLTETGELVTLKG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G +A +GLY D S GFVR +NS + P Sbjct: 117 YPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLYEADFSSGFVRYDNSAVMPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ EAI+ Sbjct: 177 AQPEPVVDRFDVGVMQGFLEESNVNAVQEMTQLIMVTRAFDNVTALMRDSEGSLEEAIKT 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|307318906|ref|ZP_07598337.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti AK83] gi|306895320|gb|EFN26075.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti AK83] Length = 241 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N++TVGFR +VKF++V+G + K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTR---PTKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+E+LS + G+ TG+ LDFA++GDAWF++ +P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEFLSTKTGALARTGSALDFAIKGDAWFSIGTPGGPALTRDGRFTLTETGELVTIKG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G IA +GLY D S+GF+R +NS + P Sbjct: 117 YPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQIALLGLYEADFSKGFMRYDNSSVMPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ +AI Sbjct: 177 AQPEPVVDRFDVGVMQGFLEESNVNAIQEMSQLIMITRAFDNVTALMRDSEGSLDKAIET 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|150395479|ref|YP_001325946.1| flagellar basal body rod protein FlgF [Sinorhizobium medicae WSM419] gi|150026994|gb|ABR59111.1| flagellar basal body rod protein [Sinorhizobium medicae WSM419] Length = 241 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 108/241 (44%), Positives = 165/241 (68%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N++TVGFR +VKF++V+G K K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTK---PTKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+E+LS + G+ TG+ LDFA++GDAWF++++P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEFLSTKTGALARTGSALDFAVKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G +A +GL+ D S+GF+R +NS + P Sbjct: 117 YPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEADFSKGFMRYDNSAVMPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ +AI Sbjct: 177 AQPEPVVDRFDVGVMQGFLEESNVNAVQEMSQLIMITRAFDNVTALMRDSEGSIDKAIET 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|222147565|ref|YP_002548522.1| flagellar basal body rod protein FlgF [Agrobacterium vitis S4] gi|221734553|gb|ACM35516.1| flagellar basal body rod protein [Agrobacterium vitis S4] Length = 244 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 104/242 (42%), Positives = 159/242 (65%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q AL++RL+T+ADNM+N +TVGFR +VKF EVV ND + KI+FV+ Sbjct: 1 MQSGMYVSLSSQRALDKRLTTIADNMANVNTVGFRGTEVKFDEVVSRTGNDQNAKIAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+ + G + TG LDFA++GDAWF++++P G LTRDGRF +T G LVS G Sbjct: 61 QGNDYLNTQSGEMLQTGGTLDFAVKGDAWFSIDTPAGPALTRDGRFTMTSTGQLVSVRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD PIQ+ +VG G I+Q G+ I+ +GL++ D+S+G++R ENSG+ Sbjct: 120 YSVLDAGGGPIQLDPNGGEPHVGADGTINQNGRQISQIGLFTADISKGYLRTENSGVITT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D + + V +G++E SN N + +M Q+I +++ F SI+ + + E SM E I+ Sbjct: 180 DRPQAVVDDATIGVMQGYVEQSNVNGISQMTQLIQVSRAFESISASMSQTENSMSETIKT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|2916790|emb|CAA11956.1| flagellar basal-body rod protein [Sinorhizobium meliloti] Length = 229 Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 105/230 (45%), Positives = 156/230 (67%), Gaps = 4/230 (1%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 +ALE+RL+T+ADN++N++TVGFR +VKF++V+G K K+S+V+ G+E+LS + G+ Sbjct: 1 MALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTK---PTKVSYVSEGEEFLSTKTGA 57 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG+ LDFA++GDAWF++++P G LTRDGRF +T+ G LV+ G YPVLD PIQ Sbjct: 58 LARTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKG-YPVLDAGGAPIQ 116 Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + VG G I Q G IA +GLY D S+GF+R +NS P P P+ D V Sbjct: 117 LNGGAGEIAVGADGAIHQNGVQIALLGLYEADFSKGFMRYDNSSDMPAAQPEPVVDRFDV 176 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ +AI + Sbjct: 177 GVMQGFLEESNVNAIQEMSQLIMITRAFDNVTALMRDSEGSLDKAIETLG 226 >gi|163758009|ref|ZP_02165097.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] gi|162284298|gb|EDQ34581.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] Length = 241 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 100/245 (40%), Positives = 156/245 (63%), Gaps = 8/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 MQ S + L++Q+ALE+R++T+ADN++N +T GFR ++KF+EV+ + N +SF Sbjct: 1 MQGSLYVALSSQIALERRMNTLADNVANANTTGFRATEIKFNEVLADTGVAN-----VSF 55 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V G++YLS E G +TG++LDFA+ G+AWF +E+P G +LT+DGRF +T G LV+ Sbjct: 56 VNQGEDYLSTENGGLRTTGSQLDFAIRGEAWFMVETPTGNMLTKDGRFTITQAGELVNID 115 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G YPVLD PIQ+ + G G ++Q G I +GLY D+SQG+ R+ + G+ Sbjct: 116 G-YPVLDPGGAPIQLNPAGDPPKAGRDGGLTQDGVRIGAIGLYQADLSQGYYRQGSLGVV 174 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 PN+PP + D +G + +G++EDSN N + EM +I +++ F + + + E EAI Sbjct: 175 PNVPPEAVVDTAGTGLLQGYIEDSNVNPILEMTNLIMVSRAFENTSAMTRATEDVFKEAI 234 Query: 239 RNIAS 243 R + S Sbjct: 235 RTLGS 239 >gi|13472570|ref|NP_104137.1| flagellar basal body rod protein FlgF [Mesorhizobium loti MAFF303099] gi|17366619|sp|Q98HE3|FLGF_RHILO RecName: Full=Flagellar basal-body rod protein flgF gi|14023316|dbj|BAB49923.1| flagellar basal-body rod protein; FlgF [Mesorhizobium loti MAFF303099] Length = 241 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 152/243 (62%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ S + L+AQ+ALE+RL T+ADN++N +TVGFR VKF ++V + +SF + Sbjct: 1 MQDSLYVALSAQMALERRLDTIADNVANANTVGFRATGVKFEDMVSGTGQ---KSVSFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 SGK YLS GS TG DFA++GDAWFA+++P G ++TRDGRF + ++G L+S G Sbjct: 58 SGKTYLSGAHGSLSETGNPFDFAIQGDAWFAIDTPAGTVMTRDGRFSMNENGELMSIEG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD PIQ+ ++ G G + Q +++ ++GLY+ D + FVR NSGI P Sbjct: 117 HPVLDAGGAPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGENFVRYGNSGIVPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D S V + +GF+E+SN N + EM ++I + + F + L+ + S EAI+ Sbjct: 177 RTPEPVTDRSDVGIAQGFVEESNVNPVLEMTRLIMVQRAFENTAALMRQTASSSDEAIKT 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|260466625|ref|ZP_05812813.1| flagellar basal-body rod protein FlgF [Mesorhizobium opportunistum WSM2075] gi|259029631|gb|EEW30919.1| flagellar basal-body rod protein FlgF [Mesorhizobium opportunistum WSM2075] Length = 240 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 151/243 (62%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + L+AQ+ALE+RL T+ADN++N +TVGFR VKF +VV + +SF + Sbjct: 1 MRDSLYVALSAQMALERRLDTIADNVANANTVGFRATGVKFEDVVSGTGQ---KSVSFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 SGK YLS G TG DFA++GDAWFA+++P G ++TRDGRF + ++G L+S G Sbjct: 58 SGKTYLSGAHGPLNETGNPFDFAIQGDAWFAIDTPAGPVMTRDGRFSMNENGELMSIEG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD PIQ+ ++ G G + Q +++ ++GLY+ D FVR NSGI P Sbjct: 117 HPVLDAGGAPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGVNFVRYGNSGIVPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D S V + +GF+E+SN N + EM ++I + + F + L+ + + S EAI+ Sbjct: 177 RTPEPVTDRSDVGIAQGFVEESNVNPVLEMTRLIMVQRAFENTAALMRQTDSSTDEAIKT 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|1870712|gb|AAB48836.1| FlgF [Sinorhizobium meliloti] Length = 240 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 103/227 (45%), Positives = 152/227 (66%), Gaps = 6/227 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N++TVGFR +VKF++V+G K K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTK---PTKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+E+LS + G+ + TG+ LDFA++GDAWF++++P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEFLSTKTGA-LRTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKG- 115 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G +GLY D S+GF+R +NS + P Sbjct: 116 YPVLDAGGPPIQLNGGAGEIAVGADGAIHQNGVQTCLLGLYEADFSKGFMRYDNSSVMPA 175 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 P D V V +GFLE+SN N + EM Q+I +T+ F+++T L+ Sbjct: 176 AQPN-RRDRFDVGVMQGFLEESNVNGIQEMSQLIMITRAFDNVTALM 221 >gi|319781687|ref|YP_004141163.1| flagellar basal-body rod protein FlgF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167575|gb|ADV11113.1| flagellar basal-body rod protein FlgF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + L++Q+ALE+RL T+ADN++N T+GFR VKF +VV + +SF + Sbjct: 1 MRDSLYVALSSQIALERRLDTIADNVANASTIGFRATGVKFEDVVSGTGQ---KSVSFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 GK YLS G+ TG DFA++GDAWFA+E+P G ++TRDGRF + ++G L+S G Sbjct: 58 PGKTYLSGAHGALSETGNPFDFAIQGDAWFAIETPVGTVMTRDGRFSMNENGELMSIEG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD PIQ+ ++ G G + Q +++ ++GLY+ D FVR NSGI P Sbjct: 117 HPVLDAGGSPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGANFVRYGNSGIVPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D S + V +GFLE+SN N + E+ ++I + + F + L+ + + S EAI+ Sbjct: 177 RTPEPVTDRSDIGVAQGFLEESNVNPVLEITRLIMVQRAFENTAALMRQTDSSTDEAIKT 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|110632662|ref|YP_672870.1| flagellar basal body rod protein FlgF [Mesorhizobium sp. BNC1] gi|110283646|gb|ABG61705.1| flagellar basal body rod protein [Chelativorans sp. BNC1] Length = 239 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 147/243 (60%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N TVGFR + FS+V+ + ++ +SFV+ Sbjct: 1 MQTGLYVALSSQMALERRLATLADNVANAGTVGFRAGGITFSDVMSGLS---EEAVSFVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G + G TG+ DFA++GDAWFA+E+P G ++TRDGRF + + G LV+ G Sbjct: 58 TGSNFYDTRAGGLRETGSPFDFAVQGDAWFAVETPAGPVMTRDGRFTMRETGELVTLEG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD P+ + + G G + Q G++I +GL+S R NSG P+ Sbjct: 117 HAVLDAGGAPLVLDPQAGPPEAGADGILRQNGQLIGAIGLFSFTPGPNATRFGNSGFLPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V + +GFLEDSN N + EM ++I + + F +T L+ +++ SM +AI+ Sbjct: 177 TRPQPVVDQPDVGIAQGFLEDSNVNPVNEMMRLIQVQRTFEQVTALMRDSDTSMKDAIQA 236 Query: 241 IAS 243 + S Sbjct: 237 MGS 239 >gi|328545467|ref|YP_004305576.1| flagellar basal body rod protein [polymorphum gilvum SL003B-26A1] gi|326415208|gb|ADZ72271.1| Flagellar basal body rod protein [Polymorphum gilvum SL003B-26A1] Length = 241 Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 149/241 (61%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+AQ++L RL TVA N++N +T G+R ++KF+EV+ D +SF Sbjct: 1 MQSALYVALSAQVSLSNRLETVARNVANMNTAGYRADEIKFAEVLSKAGAD---PVSFAT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G+ Y+S++ G T LD A+EGD W A+ + G++ TRDGR K+ +DG L + +G Sbjct: 58 AGERYISRQHGGLTRTDNPLDVAVEGDGWLAVRTGAGVVYTRDGRMKMDNDGVLRTLNG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD +PI + ++ + +G G ++Q V +GL+ +D R +NSG+ P+ Sbjct: 117 YDVLDAGGLPILLDREGGMPVIGRDGTVTQGEDVAGALGLFRIDERAKLTRFDNSGVIPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 IP P+++ + + +G++E +N N + E+ ++I +T+ F T++I+ +++S +AIR+ Sbjct: 177 IPAEPIQEFTSSGMVQGYVEGANINPIRELTKLIMITRAFEGATSMIEASDRSQEQAIRD 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|114706758|ref|ZP_01439658.1| flagellar basal body rod protein [Fulvimarina pelagi HTCC2506] gi|114537706|gb|EAU40830.1| flagellar basal body rod protein [Fulvimarina pelagi HTCC2506] Length = 240 Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 146/243 (60%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+TS + L+ Q+A+E+RL T+A N++N TVGFR +V+F E++ D ++FV+ Sbjct: 1 METSLPVALSGQIAMEKRLETLAHNIANARTVGFRAEEVRFEELLSHTAPD---PVAFVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ YLS + G+ TG LD A+ G+A+FA++ GI+ TRDGR +V+ +G + + +G+ Sbjct: 58 KGETYLSNKSGALTQTGNPLDLAVRGEAFFAIQGDNGIVYTRDGRMQVSPEGMVQTLTGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P+LD +Q+ +G G I Q G+ +A +GL+ + R + SG+ + Sbjct: 118 -PLLDAGGQALQVDPAGGPLTIGGNGMIHQNGQEVAAVGLFRIPQGANVTRADTSGVVSD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +P TP+ + V +G++E++N N + EM ++I L + F S ++ N++S+ EAI+ Sbjct: 177 VPATPVVEFLTDNVVQGYVEEANVNPVQEMTRLIALQRAFESAANVVQTNDRSLSEAIKA 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|90418400|ref|ZP_01226312.1| flagellar basal-body rod protein FlgF [Aurantimonas manganoxydans SI85-9A1] gi|90338072|gb|EAS51723.1| flagellar basal-body rod protein FlgF [Aurantimonas manganoxydans SI85-9A1] Length = 241 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 138/243 (56%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+T+ + L+AQLA+ +RL T+A N++N+ T GFR ++KF E+ I + +SF + Sbjct: 1 METALPVALSAQLAMSKRLDTIAHNVANSRTTGFRAEEIKFEEL---ISLSAPEPVSFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G Y S G TG LD A++GDA+FA + P G + TRDGR ++ G + + SG Sbjct: 58 EGTTYFSTRSGEMTQTGNPLDMAVDGDAFFAFQGPNGPVYTRDGRMRINAQGMVETISG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YP++D+ P+Q+ + G I+Q G +GL+ + R ENSG+ P+ Sbjct: 117 YPLVDVGGAPLQVDPNAGPVTITRDGMITQNGAQAGAVGLFQLPAGAKLTRFENSGLIPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+ + + V V +GF E SN N M E+ ++I L + F + + L+ +E+++ +A++ Sbjct: 177 RAAVPIVEFADVGVIQGFQEGSNVNPMLEISRLISLQRAFENASNLVQSSERTLDDAVKT 236 Query: 241 IAS 243 + + Sbjct: 237 LGT 239 >gi|115523168|ref|YP_780079.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisA53] gi|115517115|gb|ABJ05099.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisA53] Length = 243 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 132/241 (54%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+AQ++LE+RL T+A+NM+N T FR VKF A+ N + ++F Sbjct: 1 MQSALYVSLSAQVSLEKRLETIANNMANMKTAAFRADAVKFET---AMSNAASKPVAFST 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G ++S++ GS TG LD A+ G+AW P G + TRDGR ++ +G L + +G Sbjct: 58 PGDNFISRKAGSVTQTGNNLDVAVVGNAWIGFTGPNGAVYTRDGRMQINANGELQTVTG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PI + + G ISQ + +GL+ + R NSG+ P+ Sbjct: 117 YPVLDAGGTPILVDPDAGPLIIARNGIISQGTNQVGVLGLFDIPADAKLERFGNSGVVPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 T + D G ++GF+E SN + + E+ QM+ + F +++LI+ +E +M AIR Sbjct: 177 RAATAVVDFVGAGFQQGFVEGSNVDPLLELTQMMTAQRAFQGVSSLIEGSEGTMQNAIRT 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|27381995|ref|NP_773524.1| flagellar basal body rod protein FlgF [Bradyrhizobium japonicum USDA 110] gi|27355165|dbj|BAC52149.1| flagellar basal body rod protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 136/241 (56%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ +GL+AQ+ALE+RL T+A+N++N +T FRT VKF V+ + ++F + Sbjct: 1 MQSALYVGLSAQVALEKRLQTIANNVANVNTAAFRTDVVKFETVLSKAGAN---PVAFSS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +S+E G+ +G LD A+ G W A P G + TRDGR ++ +G L + +G Sbjct: 58 PGDNIISRETGNITESGNPLDVAVVGQGWLAFAGPNGTVYTRDGRLQIAANGDLQTVAG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PV+D I + ++ G I+Q I T+GL+++ R NSG++P+ Sbjct: 117 FPVIDAGGAQITLDPNGGPVSIARSGAITQDNNEIGTIGLFNIPTDANLERYGNSGVTPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P T + D S K+G++E S AN M E+ +++ ++ F+ ++I+ E S+ AIR Sbjct: 177 RPATAIADFSRDGFKQGYVEGSGANPMMELTKLMAASRAFDGTNSMIEGTESSLQNAIRT 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|153011530|ref|YP_001372744.1| flagellar basal body rod protein FlgF [Ochrobactrum anthropi ATCC 49188] gi|151563418|gb|ABS16915.1| flagellar basal body rod protein [Ochrobactrum anthropi ATCC 49188] Length = 243 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V N +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIV---SNKASDDVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 ++ E G I T LD A++GD W ++ +P+G I TRDGR + G LVS +G +PV Sbjct: 62 SFIRTEAGPMIKTDNPLDVAVKGDVWMSVSTPQGQIYTRDGRMNMLPTGDLVSITG-HPV 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G I +GLY++ SG+ PN P Sbjct: 121 LDVGGAPIVLNPGGGAPKISSDGAIYQNGAQIGAIGLYTIPADADLTYAGTSGVIPNKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVADDNSVGVVQGMIEGSNVDAMTEMTRLISVSRAFEQVNNLLSQQESTVSEAIKTLGS 240 >gi|90422600|ref|YP_530970.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisB18] gi|90104614|gb|ABD86651.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB18] Length = 243 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+AQ++LE+RL T+A+NM+N T FR VKF A+ Q ++F Sbjct: 1 MQSALYVSLSAQVSLEKRLETIANNMANMKTTAFRADAVKFET---ALSRAASQPVAFAT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G ++S+ GS TG LD A+ G++W P G + TRDGR +++ G L + +G Sbjct: 58 PGDNFISRAAGSVTQTGNNLDVAVVGNSWMGFTGPSGPVYTRDGRMQISSTGELQTITG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PI + + G ISQ + +GL+ + R NSG+ P+ Sbjct: 117 YPVLDAGGTPIIVDPDAGPLTISRNGTISQGTNEVGMLGLFEIAADAKLARFANSGVVPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 T + D ++G++E SN + + EM Q++ T+ F S+++LI+ +E +M AIR Sbjct: 177 RGATAVVDFINTGFQQGYVEGSNVDPLSEMTQLMTATRAFQSVSSLIESSEGTMQNAIRT 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|118589943|ref|ZP_01547347.1| flagellar basal body rod protein [Stappia aggregata IAM 12614] gi|118437440|gb|EAV44077.1| flagellar basal body rod protein [Stappia aggregata IAM 12614] Length = 243 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 144/245 (58%), Gaps = 6/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+++ + L+AQ+AL RL TVA N++N +T G+R +VKF+E+V D K+SF Sbjct: 1 MESALYVALSAQVALSNRLETVARNVANMNTAGYRADEVKFAELVSKAGQD---KVSFST 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G++Y+S++ GS T LD A+EG+AWFA+ G + TRDGR ++ +DG+L + +G Sbjct: 58 GGEKYISRQYGSLNKTDNPLDLAVEGEAWFAIRDANGNLSYTRDGRLQIGNDGTLRTLTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-KVIATMGLYSVDMSQGFVRRENSGIS 178 + +L PI + + + GEISQ +I +GL+ + R ENS + Sbjct: 118 QQ-ILGAGGQPISLDPDAGTPLITQSGEISQNDVGIIGQVGLFLIPDDAQLTRAENSAVI 176 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P+ P P++ V++G++E SN N + EM +MI +++ F S T +ID + +S +AI Sbjct: 177 PDKPVIPVQTYDTNGVRQGYVEGSNINPVREMTKMIMISRAFESATKMIDTSNESQEKAI 236 Query: 239 RNIAS 243 R + + Sbjct: 237 RELGA 241 >gi|170748127|ref|YP_001754387.1| flagellar basal body rod protein [Methylobacterium radiotolerans JCM 2831] gi|170654649|gb|ACB23704.1| flagellar basal body rod protein [Methylobacterium radiotolerans JCM 2831] Length = 246 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 141/247 (57%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L+AQ+ALEQRL+TVA N++N TVG+R +VKF ++ + + ++F Sbjct: 1 MQSSLYVTLSAQMALEQRLNTVAANVANLGTVGYRAEEVKFETILSQAGH---RDVAFAT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ +LS++ G I T + LD L+GD W A+ PRG++ TRDGR +VT G L G+ Sbjct: 58 PGETFLSRKAGPLIKTDSPLDVGLQGDGWLAVRGPRGMVYTRDGRMQVTAAGDLQDLDGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +LD P+ + + +G+ G +SQ I +G++ +D + R ++ + Sbjct: 118 A-ILDPGGSPLTVDPEGPPLTIGQDGIVSQGTNQIGALGVFRLDPAAKLTRVAGGAVASD 176 Query: 181 IPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 +P P+ D + V V++GF E +N N + EM ++I +T+ F S + E+E S+ Sbjct: 177 VPGRPILDFNQRDETTVRVQQGFQEGANVNPVMEMSRLIEITRAFQSAAAAVAESESSLQ 236 Query: 236 EAIRNIA 242 +AIR + Sbjct: 237 DAIRGLG 243 >gi|239834448|ref|ZP_04682776.1| flagellar basal body rod protein FlgF [Ochrobactrum intermedium LMG 3301] gi|239822511|gb|EEQ94080.1| flagellar basal body rod protein FlgF [Ochrobactrum intermedium LMG 3301] Length = 243 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 133/240 (55%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KFS +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFSSIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 ++ E G I T LD A++GD W ++ +P+G I TRDGR + G LV+ +G +PV Sbjct: 62 SFIRTEAGPMIKTDNPLDVAVKGDVWMSVSTPQGQIYTRDGRMNMLPTGDLVTVTG-HPV 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G I +GL+++ SG+ PN P Sbjct: 121 LDVGGAPIVLNPAGGAPKISSDGAIYQNGAQIGAIGLFTIPADAELTYAGTSGVIPNKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVADDNSVGVVQGMIEGSNVDAMTEMTRLISVSRAFEQVNNLLAQQETTVSEAIKILGS 240 >gi|304392511|ref|ZP_07374451.1| flagellar basal-body rod protein FlgF [Ahrensia sp. R2A130] gi|303295141|gb|EFL89501.1| flagellar basal-body rod protein FlgF [Ahrensia sp. R2A130] Length = 250 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 136/235 (57%), Gaps = 2/235 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-DIDQKISFV 59 ++T ++ L++QLALE+RL T+ADN++N+ TVGFR V+F+E+ + D Q SF Sbjct: 6 IETGLSVSLSSQLALERRLGTLADNVANSGTVGFRATHVRFAEIEQRVTGGDESQTTSFA 65 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ LS G+ + TG LD A++G+ WFAL+ G I+TRDGRF++ +G L S +G Sbjct: 66 SRGRSVLSPTAGTLVETGARLDVAIKGEGWFALQGAAGKIMTRDGRFQMDAEGQLRSVNG 125 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 VLD P+ + +G G I Q G+ + +GLY+ D VR SGI Sbjct: 126 DE-VLDPGGAPLALNVAAGPPTIGSDGSIVQNGQQVGAIGLYAFDPGTDPVRIGTSGILA 184 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 P L D +V +G++E +N + + EM +I + + F+++ ++ +++ ++ Sbjct: 185 QGAPVALVDGDAPSVLQGYVEQANVDPVREMTNLITIHRTFDNVAAMVRKSDAAL 239 >gi|170744541|ref|YP_001773196.1| flagellar basal body rod protein [Methylobacterium sp. 4-46] gi|168198815|gb|ACA20762.1| flagellar basal body rod protein [Methylobacterium sp. 4-46] Length = 242 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 134/242 (55%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ + L+AQ+AL++RL TVA+N++N TVG+R + KF V + ++F + Sbjct: 1 MQNGLYVSLSAQVALQKRLDTVANNIANLATVGYRAEETKFEAVFDKARTG---PVAFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 +G Y+S+ G I T LD A++GDAW +++ P G + TRDGR + G L S SG Sbjct: 58 TGDTYISRLAGPTIKTDAPLDVAVQGDAWLSVQGPGGAPVYTRDGRMTMDASGQLRSVSG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + P+LD PI + +G G I Q G ++ ++G++++D R ++ Sbjct: 118 Q-PILDPGGAPILLDPNAGPPTIGRDGSIQQNGSLVGSLGVFTLDAKSRITRAGPGAVTS 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N+P P++D + + V +G LE +N N + EM ++I + + F++ E + S+ AIR Sbjct: 177 NLPARPVQDFTKIGVVQGHLEGANVNPILEMTKLIAIQRAFDNAVATASEADSSLQSAIR 236 Query: 240 NI 241 + Sbjct: 237 TL 238 >gi|256059629|ref|ZP_05449826.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33] gi|261323599|ref|ZP_05962796.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33] gi|261299579|gb|EEY03076.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33] Length = 243 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIPSKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVVDDNSVGVVQGMIESSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIKTLGS 240 >gi|300024616|ref|YP_003757227.1| flagellar basal-body rod protein FlgF [Hyphomicrobium denitrificans ATCC 51888] gi|299526437|gb|ADJ24906.1| flagellar basal-body rod protein FlgF [Hyphomicrobium denitrificans ATCC 51888] Length = 240 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ +GL+AQLAL++RL TVA+N++N T G+R ++ F EV + +SFV+ Sbjct: 1 MQSNIYVGLSAQLALQRRLDTVANNVANAGTAGYRAEQMSFEEV---LSKSGQTAVSFVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ +LS E G T LD A+ GDAW A+++P G TRDGR ++ DG L + SG Sbjct: 58 QGRTHLSTEGGEITQTDNPLDIAVRGDAWLAIQTPTGPAYTRDGRMQMRADGVLTNLSGD 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD P+Q+ + + G I Q G + GLY + R + + + Sbjct: 118 -PFLDAGGSPVQLDPDGGRITINKAGTIVQDGNNLGAFGLYRMPQGANLTRGHGASVITD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P D V +G++E SN N + EM + L + F++++ ++ E E S+ ++++ Sbjct: 177 QAAVPEIDFLRTGVVQGYVEKSNVNPILEMTHLTTLQRSFDAVSNVLRETESSLQDSLKT 236 Query: 241 IA 242 IA Sbjct: 237 IA 238 >gi|23499891|ref|NP_699331.1| flagellar basal body rod protein FlgF [Brucella suis 1330] gi|148558748|ref|YP_001257194.1| flagellar basal body rod protein FlgF [Brucella ovis ATCC 25840] gi|163844323|ref|YP_001621978.1| flagellar basal body rod protein FlgF [Brucella suis ATCC 23445] gi|225628603|ref|ZP_03786637.1| flagellar basal body rod protein FlgF [Brucella ceti str. Cudo] gi|254699439|ref|ZP_05161267.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str. 513] gi|254706314|ref|ZP_05168142.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M163/99/10] gi|254711394|ref|ZP_05173205.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis B2/94] gi|254711993|ref|ZP_05173804.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1] gi|254715063|ref|ZP_05176874.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1] gi|256029976|ref|ZP_05443590.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M292/94/1] gi|256158141|ref|ZP_05456057.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1] gi|256252908|ref|ZP_05458444.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94] gi|261216770|ref|ZP_05931051.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1] gi|261219997|ref|ZP_05934278.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94] gi|261313761|ref|ZP_05952958.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M163/99/10] gi|261319000|ref|ZP_05958197.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis B2/94] gi|261319637|ref|ZP_05958834.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1] gi|261749890|ref|ZP_05993599.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str. 513] gi|265986997|ref|ZP_06099554.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M292/94/1] gi|265996658|ref|ZP_06109215.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1] gi|294853152|ref|ZP_06793824.1| flagellar basal-body rod protein FlgF [Brucella sp. NVSL 07-0026] gi|23463466|gb|AAN33336.1| flagellar basal-body rod protein FlgF [Brucella suis 1330] gi|148370033|gb|ABQ62905.1| flagellar basal-body rod protein FlgF [Brucella ovis ATCC 25840] gi|163675046|gb|ABY39156.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|225616449|gb|EEH13497.1| flagellar basal body rod protein FlgF [Brucella ceti str. Cudo] gi|260918581|gb|EEX85234.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94] gi|260921859|gb|EEX88427.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1] gi|261292327|gb|EEX95823.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1] gi|261298223|gb|EEY01720.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis B2/94] gi|261302787|gb|EEY06284.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M163/99/10] gi|261739643|gb|EEY27569.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str. 513] gi|262550955|gb|EEZ07116.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1] gi|264659194|gb|EEZ29455.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M292/94/1] gi|294818807|gb|EFG35807.1| flagellar basal-body rod protein FlgF [Brucella sp. NVSL 07-0026] Length = 243 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIPSKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIKTLGS 240 >gi|256014918|ref|YP_003104927.1| flagellar basal-body rod protein FlgF [Brucella microti CCM 4915] gi|255997578|gb|ACU49265.1| flagellar basal-body rod protein FlgF [Brucella microti CCM 4915] Length = 243 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIPSKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIKTLGS 240 >gi|254702556|ref|ZP_05164384.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str. 686] gi|261753134|ref|ZP_05996843.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str. 686] gi|261742887|gb|EEY30813.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str. 686] Length = 243 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGVIGLYTIPADADLAYAGTSGVIPSKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIKTLGS 240 >gi|158422269|ref|YP_001523561.1| flagellar basal body rod protein FlgF [Azorhizobium caulinodans ORS 571] gi|158329158|dbj|BAF86643.1| flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] Length = 240 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 134/242 (55%), Gaps = 10/242 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKIS 57 M + L+ Q+A E+R++T+A+N++N +T G+R ++KFS ++ GA + I Sbjct: 1 MSNGLYVALSGQMATEKRMATIANNVANMNTPGYRAEEIKFSSIMAEQGA------KDIK 54 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 F ++G+ Y S+ G T + D A++G WF++++P G+ TRDGRF VT DG LVS Sbjct: 55 FASTGESYTSRRAGPITYTNSPYDVAVQGKGWFSVKTPDGVAYTRDGRFNVTADGMLVSV 114 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 + YPVLD + I + G I Q + T+GL+ + + R +NS + Sbjct: 115 N-NYPVLDQGGTAVMIQPNQGELKITADGTIIQGTNPVGTLGLFEIPLDAKLKRYDNSAV 173 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P+ TP+ D + +++G++E SN + + EM ++I + + F S I + E S ++ Sbjct: 174 IPDKAATPVTDYNSNAIRQGYVEGSNVDPVMEMTRLIMVQRAFESAAQAISQQETSGTDS 233 Query: 238 IR 239 IR Sbjct: 234 IR 235 >gi|254720629|ref|ZP_05182440.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13] gi|265985673|ref|ZP_06098408.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13] gi|306837353|ref|ZP_07470232.1| flagellar basal body rod protein FlgF [Brucella sp. NF 2653] gi|264664265|gb|EEZ34526.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13] gi|306407545|gb|EFM63745.1| flagellar basal body rod protein FlgF [Brucella sp. NF 2653] Length = 243 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGEPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIPSKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIKTLGS 240 >gi|306846298|ref|ZP_07478859.1| flagellar basal body rod protein FlgF [Brucella sp. BO1] gi|306273293|gb|EFM55162.1| flagellar basal body rod protein FlgF [Brucella sp. BO1] Length = 243 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGEPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADVAYAGTSGVIPSKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQETTVSEAIKTLGS 240 >gi|62317080|ref|YP_222933.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 1 str. 9-941] gi|83269073|ref|YP_418364.1| flagellar basal body rod protein FlgF [Brucella melitensis biovar Abortus 2308] gi|189022347|ref|YP_001932088.1| flagellar basal body rod protein FlgF [Brucella abortus S19] gi|225685989|ref|YP_002733961.1| flagellar basal body rod protein FlgF [Brucella melitensis ATCC 23457] gi|237816642|ref|ZP_04595634.1| flagellar basal body rod protein FlgF [Brucella abortus str. 2308 A] gi|254691431|ref|ZP_05154685.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6 str. 870] gi|254695270|ref|ZP_05157098.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3 str. Tulya] gi|254698369|ref|ZP_05160197.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2 str. 86/8/59] gi|254731814|ref|ZP_05190392.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4 str. 292] gi|256256617|ref|ZP_05462153.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9 str. C68] gi|256262885|ref|ZP_05465417.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|260544321|ref|ZP_05820142.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260757049|ref|ZP_05869397.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6 str. 870] gi|260759580|ref|ZP_05871928.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4 str. 292] gi|260762824|ref|ZP_05875156.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2 str. 86/8/59] gi|260882859|ref|ZP_05894473.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9 str. C68] gi|261215636|ref|ZP_05929917.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3 str. Tulya] gi|297249974|ref|ZP_06933675.1| flagellar basal-body rod protein FlgF [Brucella abortus bv. 5 str. B3196] gi|62197273|gb|AAX75572.1| FlgF, flagellar basal-body rod protein FlgF [Brucella abortus bv. 1 str. 9-941] gi|82939347|emb|CAJ12294.1| Flagellar basal body rod protein [Brucella melitensis biovar Abortus 2308] gi|189020921|gb|ACD73642.1| Flagellar basal body rod protein [Brucella abortus S19] gi|225642094|gb|ACO02007.1| flagellar basal body rod protein [Brucella melitensis ATCC 23457] gi|237787455|gb|EEP61671.1| flagellar basal body rod protein FlgF [Brucella abortus str. 2308 A] gi|260097592|gb|EEW81466.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260669898|gb|EEX56838.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4 str. 292] gi|260673245|gb|EEX60066.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2 str. 86/8/59] gi|260677157|gb|EEX63978.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6 str. 870] gi|260872387|gb|EEX79456.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9 str. C68] gi|260917243|gb|EEX84104.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3 str. Tulya] gi|263092722|gb|EEZ16931.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|297173843|gb|EFH33207.1| flagellar basal-body rod protein FlgF [Brucella abortus bv. 5 str. B3196] gi|326410315|gb|ADZ67379.1| flagellar basal body rod protein FlgF [Brucella melitensis M28] gi|326553608|gb|ADZ88247.1| flagellar basal body rod protein FlgF [Brucella melitensis M5-90] Length = 243 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G VS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDPVSVTGNA-I 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIPSKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIKTLGS 240 >gi|256111963|ref|ZP_05452914.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3 str. Ether] gi|265993412|ref|ZP_06105969.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3 str. Ether] gi|262764282|gb|EEZ10314.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3 str. Ether] Length = 243 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 4/240 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DLSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G VS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDPVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ PI + + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIPSKPA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 181 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIKTLGS 240 >gi|46205476|ref|ZP_00048498.2| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 241 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 135/239 (56%), Gaps = 4/239 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ S + L++Q+ALE+RL+T A+N++N T GFR +V FSE+ + ++FV Sbjct: 1 MQNSLYVALSSQIALEKRLTTTANNVANMATAGFRAEEVSFSEL---LAKSSRGDVAFVD 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK LS+ G T + LD A++GDAW ++ P+G + TRDGR + +G L + G Sbjct: 58 AGKTALSRVAGPTTKTDSALDVAVQGDAWLGVKGPKGTLYTRDGRLTMDANGQLRTVGG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PV+D P+ + + +G G I Q + +GL+++D R + ++ + Sbjct: 117 LPVVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGLFTLDPKAKLTRSGENAVAAS 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +P P++D + + + +G++E +N N + EM ++I + + F S T+ E E ++ A++ Sbjct: 177 MPGQPVQDFTRLGIVQGYIEGANVNPILEMTKLIAIQRAFESAATMTSEAENTLTGAVK 235 >gi|217977819|ref|YP_002361966.1| flagellar basal body rod protein [Methylocella silvestris BL2] gi|217503195|gb|ACK50604.1| flagellar basal body rod protein [Methylocella silvestris BL2] Length = 241 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 141/243 (58%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L+ +AL++RL+T+A N++N T G+R +V+F ++ + ++FV+ Sbjct: 1 MQSGLYVSLSGLVALDRRLTTIAANVANQSTPGYRAEEVEFKSLLSKAGAN---PVAFVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G+ ++S+ G I T LD A++G W AL++P G + T+DGR + + G+LVS G Sbjct: 58 NGESFISRRGGVPIKTDGPLDVAVQGHGWLALKTPDGTVYTKDGRMHMEESGALVSVDG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD + PI + + + G I+Q + +G++S+D R NSG+ + Sbjct: 117 FPVLDAGATPILLDPAAGPPTIAQDGMITQNSHQVGAIGIFSLDGQAKLKRYTNSGVMSD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +P T D S V +GF+E +N N + EM ++I +++ F +I + + +E S+ +AI+ Sbjct: 177 LPATAELDFSNNGVHQGFIEGANINPILEMAKLIMVSRAFENIHSATEGSESSLKDAIKT 236 Query: 241 IAS 243 + + Sbjct: 237 LGA 239 >gi|161620214|ref|YP_001594100.1| flagellar basal body rod protein FlgF [Brucella canis ATCC 23365] gi|161337025|gb|ABX63329.1| flagellar basal body rod protein [Brucella canis ATCC 23365] Length = 233 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 129/240 (53%), Gaps = 14/240 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ P + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGAP----------RISSDGAIYQNGVQVGVIGLYTIPADADLAYAGTSGVIPSKPA 170 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ + S Sbjct: 171 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIKTLGS 230 >gi|254503570|ref|ZP_05115721.1| conserved domain protein [Labrenzia alexandrii DFL-11] gi|222439641|gb|EEE46320.1| conserved domain protein [Labrenzia alexandrii DFL-11] Length = 243 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 141/244 (57%), Gaps = 6/244 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+AQ+AL RL TV+ N++N +T G+R ++ F+E+V D K+SF + Sbjct: 1 MQSALYVALSAQVALSNRLETVSRNVANMNTAGYRADEINFAEMVSKAGPD---KVSFSS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ Y+S++ GS T LD A+EG+AWFA+ G + TRDGR ++DDG+L + +G Sbjct: 58 GGENYISRQNGSLNKTDNPLDLAIEGEAWFAIRDANGGLSYTRDGRLHISDDGTLKTVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-VIATMGLYSVDMSQGFVRRENSGIS 178 + V+ PIQ+ + + G+I Q + ++ +GL+ + R+ENS + Sbjct: 118 QV-VVGAGGQPIQLNPDGGTPLITQNGDIIQGDEDIVGQIGLFLIPNDAKLTRKENSAVV 176 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P+ P++ +++G++E +N N + EM +MI +++ F S T +ID +S AI Sbjct: 177 PDRAVIPVQVFDQHGIRQGYVEGANINPVREMTKMIMISRAFESATKMIDMGSESQKTAI 236 Query: 239 RNIA 242 R + Sbjct: 237 RELG 240 >gi|182679722|ref|YP_001833868.1| flagellar basal body rod protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635605|gb|ACB96379.1| flagellar basal body rod protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 137/241 (56%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+ Q+ LE+RL+T+A N++N G+R V FS ++ K D +++ Sbjct: 1 MQSNLYVSLSGQVMLERRLTTIATNIANQSVAGYRAEDVNFSTILS--KTD-KYPVAYAG 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G+ ++S+E G T LD A++GD WFA+++P G + TRDGR + G LVS Sbjct: 58 TGRTHISREAGLLSKTDNPLDVAIQGDGWFAMQTPAGTVYTRDGRMHMQATGELVSVD-N 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +P+LD + P+ + + + G I+Q G+ I +GL+ +D + NSG+ + Sbjct: 117 HPILDAGNTPLLVDPDAGPITIAKDGMITQNGRQIGAIGLFQLDDNAKLQHYHNSGVLSD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + D + + +G++E +N N + E+ ++I +++ F I+T ++ +E S+ ++I+ Sbjct: 177 RQGVAVLDFTANGIAQGYVESANVNPILELSKLITVSRSFEQISTAMENSESSLRDSIKT 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|254473360|ref|ZP_05086757.1| flagellar basal body rod protein [Pseudovibrio sp. JE062] gi|211957476|gb|EEA92679.1| flagellar basal body rod protein [Pseudovibrio sp. JE062] Length = 241 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 133/239 (55%), Gaps = 4/239 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + L+ Q+ALE+RL TVA N++N +T G+R +VKF +V K ++F ++G+ Sbjct: 5 SLYVSLSGQMALERRLETVARNVANMETAGYRADEVKFDSLV---KRPGKDPVTFASTGE 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+S++ G+ TG LD A+EG W +++ G+ TRDGRF++ DG L S G PV Sbjct: 62 NYISRQAGAIKQTGNSLDVAIEGSGWLGIQTGNGVAYTRDGRFQIGVDGILRSIEGN-PV 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD + PI + + + G I Q+G+ + +GL+S+ R NSG+ P+ Sbjct: 121 LDSGNAPIILDPLGGPPEISKDGTIYQEGRQVGVLGLFSIPEDAKLSRTGNSGVIPDAIA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P+ D + +GF+E +N N + E+ ++I +T+ F S +++ E + IR + Sbjct: 181 EPVLDFAENGFAQGFVEGANINPISEITKLITITRAFESTNSMMQSVESIRQQTIRKLG 239 >gi|188579923|ref|YP_001923368.1| flagellar basal body rod protein [Methylobacterium populi BJ001] gi|179343421|gb|ACB78833.1| flagellar basal body rod protein [Methylobacterium populi BJ001] Length = 242 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 137/242 (56%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L++Q+ALE+RL+T A+N++N T GFR +V FSE+ + +++FV Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATAGFRAEEVSFSEL---LARSNRGEVAFVG 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 GK LS+ G T + LD A++GDAW ++ P+G + TRDGR + +G L + G Sbjct: 58 PGKNTLSRAAGPTTKTDSALDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 PV+D P+ + + +G G I Q + +G++S+D R + ++ Sbjct: 118 -MPVVDPGGGPLLLDPQAGPPTIGRDGSIHQGVNQVGALGVFSLDPKATLSRSGENAVAA 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++P P++D + + V +G++E +N N + EM ++I + + F S T+ E + ++ A++ Sbjct: 177 SLPGRPVQDFTRIGVVQGYVEGANVNPILEMTRLIAIQRAFESAATMTSEADNTLTGAVK 236 Query: 240 NI 241 + Sbjct: 237 TL 238 >gi|218528725|ref|YP_002419541.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] gi|218521028|gb|ACK81613.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] Length = 242 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 138/242 (57%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L++Q+ALE+RL+T A+N++N TVGFR +V FSE+ + +++FV Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATVGFRAEEVSFSEL---LARSNRGEVAFVG 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 GK +S+ G T + LD A++GDAW ++ P+G + TRDGR + +G L + G Sbjct: 58 PGKTTISRAAGPTTKTDSTLDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 PV+D P+ + + +G G I Q + +G++S+D R + ++ Sbjct: 118 -MPVVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGVFSIDPKATLTRSGENAVAA 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++P P++D + + + +G++E +N N + EM ++I + + F S T+ E + ++ A++ Sbjct: 177 SLPGRPVQDFTRIGLVQGYVEGANVNPIMEMTRLIAIQRAFESAATMTSEADTTLTGAVK 236 Query: 240 NI 241 + Sbjct: 237 TL 238 >gi|163850121|ref|YP_001638164.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] gi|240137255|ref|YP_002961724.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|254559266|ref|YP_003066361.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] gi|163661726|gb|ABY29093.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] gi|240007221|gb|ACS38447.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|254266544|emb|CAX22308.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] Length = 242 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 138/242 (57%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L++Q+ALE+RL+T A+N++N TVGFR +V FSE+ + +++FV Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATVGFRAEEVSFSEL---LARSNRGEVAFVG 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 GK +S+ G T + LD A++GDAW ++ P+G + TRDGR + +G L + G Sbjct: 58 PGKTTISRAAGPTTKTDSALDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTVGG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 PV+D P+ + + +G G I Q + +G++S+D R + ++ Sbjct: 118 -MPVVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGVFSIDPKATLTRSGENAVAA 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++P P++D + + + +G++E +N N + EM ++I + + F S T+ E + ++ A++ Sbjct: 177 SLPGRPVQDFTRIGLVQGYVEGANVNPIMEMTRLIAIQRAFESAATMTSEADTTLTGAVK 236 Query: 240 NI 241 + Sbjct: 237 TL 238 >gi|312115282|ref|YP_004012878.1| flagellar basal-body rod protein FlgF [Rhodomicrobium vannielii ATCC 17100] gi|311220411|gb|ADP71779.1| flagellar basal-body rod protein FlgF [Rhodomicrobium vannielii ATCC 17100] Length = 241 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 135/243 (55%), Gaps = 5/243 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L+AQ+AL++RL TVA N++N +TVG+R ++KF V+ A Q +FV Sbjct: 1 MQSSLYVALSAQVALQKRLDTVAQNVANANTVGYRGTEMKFDSVLSAADA---QMTAFVT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S +S G I TG LD AL+G W ++++P G + TRDGR ++T G LVS G Sbjct: 58 SKDGVVSLGAGGLIKTGNPLDVALKGQGWLSVQAPAGRMYTRDGRIQLTTSGMLVSMRG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD P+Q+ + E G ++Q + + +G++ V S + R G + Sbjct: 117 HPVLDAGGAPMQVDPNGPTPQIAEDGTVTQNNERVGVLGVF-VFGSDAKLSRVEGGFIAD 175 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P D + ++ G++E+SN N++ E ++I++ + F+ + I E + AI++ Sbjct: 176 KPAIAATDPAKSSMASGYVEESNVNAIKETARLIYVQRAFDEAASTIQSVESGLKSAIQS 235 Query: 241 IAS 243 + S Sbjct: 236 LGS 238 >gi|323136553|ref|ZP_08071634.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] gi|322397870|gb|EFY00391.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] Length = 240 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 136/241 (56%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++F + L++Q+ L++RL+T+A N++N+ T+G+R V F V+ + +F + Sbjct: 1 MHSAFYVSLSSQITLDKRLTTIAANVANSSTIGYRATGVSFDTVMSKTSPYV---TNFPS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G +Y+S+ G T LD A+ GDAWFA+ +P+G+ TRDGR ++ + G + + G Sbjct: 58 TGVDYISRSSGGLTKTDNPLDVAVIGDAWFAIRTPQGVAYTRDGRMRMMETGDIQTILG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD + PI++ + G I+Q + + +GL+ +D + R ENS + P+ Sbjct: 117 YPVLDAGNSPIKLDPTLGPPMIYRDGMITQGDRQVGAIGLFEIDGNATLQRGENSSVIPS 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ + + + +G LE++N N + E+ ++I + F S + D + S A+R Sbjct: 177 TPAIPVTNFTQNGMAQGHLENANVNPVSEITKLIMAHRSFESASASYDMMDNSQRAAVRT 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|319898631|ref|YP_004158724.1| flagellar basal-body rod protein flgF [Bartonella clarridgeiae 73] gi|319402595|emb|CBI76140.1| Flagellar basal-body rod protein flgF [Bartonella clarridgeiae 73] Length = 244 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 1/239 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q+ LE+R+ T+A NM+N +T GFR +KF ++ + ++ ++ F + Sbjct: 1 MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFRAGGMKFDTLISPVAHEQGDRVFFTS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S + GS + TG LD A+ GD++F++++ G + TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTDRGSLVQTGNALDIAVTGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ I + G I Q ++ +GL+ NS + P+ Sbjct: 120 LPFLDEGGAPIQLDPVGGIPRIVSDGSIYQDNSLVGKIGLFQFQPGTQLRYGPNSSVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E SG V +G++E SN N + EM ++I +++ F + +++ + E+ ++I+ Sbjct: 180 RAVLQSEAGSGDGVMQGYIESSNVNGVIEMTRLIEVSRAFERVESMLRQQEEMRSKSIQ 238 >gi|319405396|emb|CBI79015.1| Flagellar basal-body rod protein flgF [Bartonella sp. AR 15-3] Length = 244 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 133/239 (55%), Gaps = 1/239 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q+ LE+R+ T+A NM+N +T GFR +KF +V ++ ++ + F + Sbjct: 1 MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFRAGGMKFDTLVSSVAHEQGDHVFFTS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S + GS I TG LD A+ GD++F++++ G + TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTDRGSLIQTGNALDIAVTGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ + + G I Q + +GL+ NS + P+ Sbjct: 120 LPFLDEGGAPIQLNPAGGMLRIVTDGSIYQDNVFVGKIGLFQFQPGTQLRYGPNSSVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +G V +G++E SN N + EM ++I +++ F + ++ + E+ ++I+ Sbjct: 180 RAAFQSEEGNGDGVVQGYIESSNVNGVIEMTRLIEVSRAFERVEAMLRQQEEMRSKSIQ 238 >gi|121601652|ref|YP_989405.1| putative flagellar basal-body rod protein FlgF [Bartonella bacilliformis KC583] gi|120613829|gb|ABM44430.1| putative flagellar basal-body rod protein FlgF [Bartonella bacilliformis KC583] Length = 244 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 131/239 (54%), Gaps = 1/239 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q++L +R+ T+A NM+N +T GFR +KF +V I + ++ F + Sbjct: 1 MQNPIYVGVSGQISLARRMETIAQNMANVNTPGFRAGGMKFDTLVSPIAQEQGDRVFFTS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S E GS TG LD A G+++F++E+ G++ TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTERGSLEQTGNALDVAATGNSYFSMEASFGVVYTRDGRMTMTPEGMLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ +G G I Q + +GLY N+ + P+ Sbjct: 120 LPFLDDGGAPIQLNPVGGAPRIGADGSIYQGNVLAGRIGLYQFQPGTQLRYGPNASVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E +G V +G++E SN N + EM ++I +++ F + ++ + E+ ++I+ Sbjct: 180 RAAIQIEGGTGDGVMQGYVESSNVNGVAEMTRLIEVSRAFERVEAMLRQQEEMRSKSIQ 238 >gi|319403955|emb|CBI77543.1| Flagellar basal-body rod protein flgF [Bartonella rochalimae ATCC BAA-1498] gi|319406971|emb|CBI80608.1| Flagellar basal-body rod protein flgF [Bartonella sp. 1-1C] Length = 244 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 134/239 (56%), Gaps = 1/239 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q+ LE+R+ T+A NM+N +T GF+ +KF ++ ++ ++ ++ F + Sbjct: 1 MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFQAGGMKFDTLLSSVAHEQGDRVFFTS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S + GS + TG LD A+ GD++F++++ G + TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTDRGSLVETGNALDIAVVGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ + G I Q + +GL+ NS + P+ Sbjct: 120 LPFLDEGGAPIQLNPAGGTPRIVADGSIYQDNAFVGKIGLFQFQPGTQLRYGPNSSVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E SG TV +G++E SN N + EM ++I +++ F + +++ + E+ ++I+ Sbjct: 180 KAAFQSEGGSGDTVVQGYIESSNVNGVIEMTRLIEVSRAFERVESMLRQQEEMRSKSIQ 238 >gi|319409192|emb|CBI82836.1| Flagellar basal-body rod protein flgF [Bartonella schoenbuchensis R1] Length = 244 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 132/239 (55%), Gaps = 1/239 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q++L +R+ T+A NM+N +T GFR +KF +V + + ++ F + Sbjct: 1 MQNPIYVGVSGQISLARRMETIAQNMANVNTPGFRAGGMKFDTLVSPVAREQRDQVVFAS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S + G+ + TG LD A+ GD++F++++ G + TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTDRGALVKTGNALDVAVGGDSYFSMQASFGPVYTRDGRMIMTPEGGLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ + G I QK ++ +GL+ N+ + P+ Sbjct: 120 LPFLDDGGAPIQLNPAGGTPRISADGSIYQKDVLVGKIGLFQFQKGTQLRYGPNASVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P E G V +G++E SN N + EM ++I +++ F + ++ + E+ ++I+ Sbjct: 180 RPAMQSEGGIGDKVVQGYIESSNVNGVSEMTRLIEVSRAFERVEAMLRQQEEMRSKSIQ 238 >gi|288962677|ref|YP_003452971.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288914943|dbj|BAI76427.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 243 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 6/244 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ IGL+ Q+AL ++L VA+N++N +T GFR + F + A +I+F Sbjct: 1 MENQLYIGLSRQMALRRQLDVVANNVANMNTAGFRGERTLFEAAMEAGGRKPTDRIAFTI 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 Y G+ TG D AL+GD + A+++P G+ TRDGR + DG+LV +G Sbjct: 61 DRATYTDLRPGALTETGNPYDVALDGDGFLAVQTPDGVRYTRDGRLRRDADGTLVGPNG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP- 179 YPVLD PI IP + ++G G +S G V++ + ++ D Q + + P Sbjct: 120 YPVLDDGRRPIVIPSESSKISIGSDGLLSADGTVVSRIAVFRFDTPQALKQTGDLLFDPP 179 Query: 180 -NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + P P D V G E SN + E+G+M+ LT+ + ++T ++D+ + + AI Sbjct: 180 AGLEPRPAPDTRLV---EGKTERSNVQGIVEIGRMMDLTRDYQAVTRMVDDGQDLLRSAI 236 Query: 239 RNIA 242 + Sbjct: 237 NRLG 240 >gi|260568536|ref|ZP_05839005.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] gi|260155201|gb|EEW90282.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] Length = 202 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 112/211 (53%), Gaps = 14/211 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTGN-AI 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD+ P + G I Q G + +GLY++ SG+ P+ P Sbjct: 121 LDVGGAP----------RISSDGAIYQNGVQVGVIGLYTIPADADLAYAGTSGVIPSKPA 170 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 P+ D + V V +G +E SN ++M EM ++I Sbjct: 171 QPVVDDNSVGVVQGMIEGSNVDAMTEMTRLI 201 >gi|296447447|ref|ZP_06889372.1| flagellar basal-body rod protein FlgF [Methylosinus trichosporium OB3b] gi|296255067|gb|EFH02169.1| flagellar basal-body rod protein FlgF [Methylosinus trichosporium OB3b] Length = 240 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 136/241 (56%), Gaps = 4/241 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++F + L+AQL++++R+ T+A+N++N T G+R V F VV D +++ + Sbjct: 1 MQSAFYVSLSAQLSIDKRMETIANNIANAATAGYRADGVSFESVVTKTGAD---AVAYAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G++Y+S+ G TG D A+ A+FA+ +P G+ TRDGR K+T+ G L + G Sbjct: 58 AGRDYVSRVAGDMQRTGDPFDVAVVRRAFFAIRTPDGVAYTRDGRMKMTETGDLQTVGG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YP+LD + + + + G I+Q G+ I +GL+ +D R + + P+ Sbjct: 117 YPILDAGNSAVVLDPTAGPPMISRDGMINQAGRQIGAIGLFMIDGDVKLSRGPGASVIPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P T + D V++G +E +N N + EM ++I ++ F S++++ D + S +AIR Sbjct: 177 KPATAVLDFGRNGVEQGVVETANVNPVREMVKLISASRAFESVSSMNDLLDSSQRDAIRT 236 Query: 241 I 241 I Sbjct: 237 I 237 >gi|294679032|ref|YP_003579647.1| flagellar basal-body rod protein FlgF [Rhodobacter capsulatus SB 1003] gi|294477852|gb|ADE87240.1| flagellar basal-body rod protein FlgF [Rhodobacter capsulatus SB 1003] Length = 237 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 9/243 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + LA Q L Q + VA+NM+N +T GFR V FSE V ++ D + +S Sbjct: 1 MDNTIYAALARQSGLMQEMQVVANNMANVNTTGFRREGVVFSEYVDSLDGD-EASLSMAH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + + G+ STG +LDFA++G+ +F +E+P G LTR G F + +G LV+ G Sbjct: 60 ASGRTIDFDSGAVASTGNQLDFAIQGEGFFMIETPEGNQLTRAGSFLRSPEGELVTPEG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD I +P VGE G +S KG+ +A +GLY S + + + Sbjct: 119 FRVLDNGGSAIFLPADQGPIAVGEDGTLSAKGQPLAQLGLYEPQNSTSISLQAGTRFAVP 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E+ V +G +E SN + + E+ +M+ + + + T +D + E IRN Sbjct: 179 EGTVPAEN---ARVMQGAVEQSNVDPVREIARMVEVQRAYELGQTFLDRED----ERIRN 231 Query: 241 IAS 243 + S Sbjct: 232 VIS 234 >gi|154253004|ref|YP_001413828.1| flagellar basal body rod protein [Parvibaculum lavamentivorans DS-1] gi|154156954|gb|ABS64171.1| flagellar basal body rod protein [Parvibaculum lavamentivorans DS-1] Length = 256 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 135/246 (54%), Gaps = 8/246 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 M+ + IGL+ Q+A+ + ++T+A+N++N +T +++ + F E + A ++ D I F Sbjct: 14 MENALLIGLSRQMAMSREMATIANNIANMNTTAYKSEAMLFEEFLAKDASEDSPDSTIRF 73 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V ++ + G+ +TG D A+ G+ +F +E+ +G++ TR+G F++ DG LV+++ Sbjct: 74 VQDVGQHRNLRDGALQTTGNPFDVAITGEGFFRVETGQGVLYTRNGNFQLDADGQLVTSN 133 Query: 119 GKYPVLDMASVPIQIPQKDEI-FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G P+L A PI +DEI + G IS + + + + + Q + NS + Sbjct: 134 GD-PILTDAGTPITFA-RDEIGITIARDGTISSDRGLRGKLAIVTFENQQEMRKAGNSLL 191 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 S P E++ V +G LE SN N + EM MI +T+ + S LID+ ++ +A Sbjct: 192 STAQEEVPAENIRLV---QGALEGSNVNPILEMTNMIEVTRSYASAQKLIDQADQMRRKA 248 Query: 238 IRNIAS 243 I+++ + Sbjct: 249 IQDLGA 254 >gi|159045791|ref|YP_001534585.1| flagellar basal body rod protein FlgF [Dinoroseobacter shibae DFL 12] gi|157913551|gb|ABV94984.1| flagellar basal-body rod protein FlgF [Dinoroseobacter shibae DFL 12] Length = 238 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 5/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ Q AL++ ++ +A+N++N T G+R + FSE V A + IS SG + + Sbjct: 9 LSRQNALKREMTVIANNIANISTTGYRAEGLVFSEYVQATGHG-QASISMTDSGAKITNY 67 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG D A+EGD +F + +P G+ LTR G F+ +G LV+ G Y +LD Sbjct: 68 SQGMLRQTGGSFDMAIEGDGFFQVAAPEGVRLTRAGAFEPDANGLLVTPDG-YQLLDAGG 126 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ IP V G +S G+ + +GL + R + PN P E+ Sbjct: 127 APVFIPPDARSIAVAADGTLSADGRPLTNIGLVVPEDPLLMERAPGASFIPNGGVLPAEN 186 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S V +GF+E SN N + E+ +MI + +++ S + ID+ + + I+ + Sbjct: 187 AS---VHQGFIEGSNVNPIVEVARMIEVQRRYESAKSFIDKEDDRIKTVIQTL 236 >gi|209963564|ref|YP_002296479.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] gi|209957030|gb|ACI97666.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] Length = 248 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 16/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + L+ Q+A+ + L A+N++N +T FR + F V K QK++FV Sbjct: 1 MENSLYVALSQQMAVRRMLDVTANNVANMNTAAFRAERPVFDAFV--EKAGKGQKVAFVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 Y G+ STG LD A+ GDAW ++ +P GI TRDGR DG LV+ G Sbjct: 59 DRATYTDTRDGTVASTGNPLDVAVRGDAWLSVATPDGIRYTRDGRLNRDPDGRLVTLDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKV--IATMGLYSVDMSQGFVRR 172 YPVLD I +P+ + G I S+ G+V + +GL + + G + R Sbjct: 118 YPVLDEGGGEITLPEDVGAIAITADGAIRAPAVDSENGEVEELGRLGLARLPAA-GDLER 176 Query: 173 ENSG-ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + SG + + P P E G T+ +G +E SN + EM +++ LT+ + +++ Sbjct: 177 DGSGLVRYDGDPLPAE---GATLIQGAVEGSNVQPITEMVRLVELTRAYGQANRMVESEH 233 Query: 232 KSMLEAI 238 + AI Sbjct: 234 ERQKTAI 240 >gi|91976162|ref|YP_568821.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisB5] gi|91682618|gb|ABE38920.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5] Length = 253 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 131/262 (50%), Gaps = 33/262 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 MQ + +GL+ Q+ LE+++ VA+N++N +T GF+ + F E + GA +++ D++ Sbjct: 1 MQNTLLVGLSRQVVLERQMDVVANNLANINTNGFKAERSVFQEFLNTGAHEDNFQAQDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV Y G T LD A++G A+ +++P+G TRDG+ + G LV Sbjct: 61 VSFVQDRAAYHDFASGPMEETKNPLDVAIDGSAFLVVQTPQGERYTRDGKLSINPQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 +ASG YPVL S PI D+ N IS G V G+ ++D +G +R Sbjct: 121 NASG-YPVLG-NSGPIVFQPTDKSIN------ISSDGNVSVLEGVATIDSLRGKLR---- 168 Query: 176 GISPNIPPTPLEDLSG---------------VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P LE G V++G++E SN NS+ EM +MI +T+ + Sbjct: 169 -MVSFARPQSLEKQGGNLFAATSDRGAPDPKAIVRQGYVEKSNVNSVLEMTRMIEVTRSY 227 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 S++ L+ + AI +A Sbjct: 228 QSVSALLQQESDLQKAAIERLA 249 >gi|259418017|ref|ZP_05741936.1| flagellar basal-body rod protein FlgF [Silicibacter sp. TrichCH4B] gi|259346923|gb|EEW58737.1| flagellar basal-body rod protein FlgF [Silicibacter sp. TrichCH4B] Length = 238 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 6/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ Q L + VA+N++N+ T G+R+ + FSE V + + +S + S Sbjct: 9 LSRQSGLLNEMQAVANNIANSATTGYRSEGLIFSEYVKSAPGQ--ESLSMGRANIRNTSL 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 E G+ T D A+EGD +F +E+P G LTR G F +G LV+A G Y VLD Sbjct: 67 EQGTMSQTNGSFDLAIEGDGFFMVETPAGNRLTRAGNFTPNAEGDLVTADG-YRVLDAGQ 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ +P E + G G +S G+ + +GL+ D +R + P E Sbjct: 126 APMFVPGDAESISFGADGTLSADGQQLGQIGLFVPDEEAQILREDGVMFRVEGETLPAE- 184 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G V +GFLE SN N+++++ +MI + + + + +D +K + AI N+ Sbjct: 185 --GAQVLQGFLEGSNVNTIHQLARMIEVQRAYEMGQSFLDNEDKRIRAAIDNL 235 >gi|86750895|ref|YP_487391.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris HaA2] gi|86573923|gb|ABD08480.1| Flagellar basal body rod protein [Rhodopseudomonas palustris HaA2] Length = 253 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 134/260 (51%), Gaps = 29/260 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 MQ + +GL+ Q+ LE+++ VA+N++N +T GF+ + F E + GA +++ D++ Sbjct: 1 MQNTLLVGLSRQVVLERQMDVVANNLANMNTNGFKAQRSVFQEYLNTGAHEDNFQRPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV YL G T LD A++G A+ +++P G TRDG+ + G LV Sbjct: 61 VSFVQDRAAYLDFSTGPMTQTKDPLDVAIDGSAFLVVQTPAGERFTRDGKLSINPRGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR--- 172 ++SG YPVL S PI D+ N I+Q G V G ++D +G +R Sbjct: 121 NSSG-YPVLG-NSGPIVFQPTDKAIN------IAQDGNVSVVEGTATIDSLRGKLRLVSF 172 Query: 173 ----------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +N + + P P D + V++G++E SN NS+ EM +M+ +T+ + Sbjct: 173 ARPQSLEKQGDNLFAATSDPGAP--DTKAI-VRQGYVEKSNVNSVLEMTRMLDVTRSYQK 229 Query: 223 ITTLIDENEKSMLEAIRNIA 242 +++L+ + AI +A Sbjct: 230 MSSLLQQEGDLQKTAIERLA 249 >gi|254462007|ref|ZP_05075423.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium HTCC2083] gi|206678596|gb|EDZ43083.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium HTCC2083] Length = 237 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 8/234 (3%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-KISFVASGKEYLS 67 L Q L + +S +A N++N +T G+R + FSEV IK + D +S + S Sbjct: 9 LTRQSGLMREMSVIASNIANANTTGYRQEGLIFSEV---IKGESDAPSLSMATARARATS 65 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G+ TG D A++GD +F +++P G L+R G F + G LV+ G Y VLD Sbjct: 66 LAPGTITQTGGPYDVAIDGDGFFQIQTPGGTRLSRAGHFMPNNQGDLVTPDG-YRVLDAG 124 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 P+ IPQ ++ G +S KG+++ +G+ +R + + P P Sbjct: 125 GAPLGIPQGTGKISISADGTLSSKGQLLGQLGIVQPSTGTQILREDGVHFRADGPTEPNF 184 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 D V++GFLE SN N M ++ +MI + + + + + + + A+R I Sbjct: 185 D---ARVRQGFLEGSNVNPMSQIARMIEVQRAYEMGQSFAETENERLRNAVRTI 235 >gi|255262463|ref|ZP_05341805.1| flagellar basal-body rod protein FlgF [Thalassiobium sp. R2A62] gi|255104798|gb|EET47472.1| flagellar basal-body rod protein FlgF [Thalassiobium sp. R2A62] Length = 238 Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 9/241 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S L Q L + + +A+N++N T G+R + FSE V A+ D IS Sbjct: 1 MENSTYATLTRQSGLMKEMRVIANNIANAATSGYRQEGITFSEYVAAVDQD-HSSISMAT 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G TG D A+EG+ +F +++P G LTR G F +G LV+A G Sbjct: 60 ANVRETSILQGGLTKTGGTFDLAIEGEGYFLVQTPDGDRLTRAGAFTPNSNGDLVTADG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD P+ IP + + G IS G I +G+ + + +R++ G+ N Sbjct: 119 YPVLDSGGAPVFIPTGADSIGIAADGTISAGGTPIGQVGIVQPNDPKELLRQD--GVMFN 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + + + +GFLEDSN + + ++ +MI + + + + +D+ + E IRN Sbjct: 177 AP-SGFDAAPDARLVQGFLEDSNVDPILQISRMIEVQRAYELGQSFLDKED----ERIRN 231 Query: 241 I 241 + Sbjct: 232 V 232 >gi|83858805|ref|ZP_00952327.1| flagellar basal-body rod protein FlgF [Oceanicaulis alexandrii HTCC2633] gi|83853628|gb|EAP91480.1| flagellar basal-body rod protein FlgF [Oceanicaulis alexandrii HTCC2633] Length = 244 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 127/245 (51%), Gaps = 14/245 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE--VVGAIKNDIDQKISF 58 M + IGL QL L +++ VA+N++N +T GF+ ++ + A D + F Sbjct: 1 MDNTMLIGLTRQLTLRRQMDVVANNIANANTQGFKAERMMLEPDTSMRARHQDGPNRARF 60 Query: 59 V---ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 V A G+++ G+ T LD AL+GD +F LE+ G TRDG F ++ G LV Sbjct: 61 VDEWAMGRDF---SQGALTHTSRPLDLALQGDGFFMLETDAGERFTRDGAFTLSPQGELV 117 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR--E 173 + G VLD PI + ++GE G ++Q G+ IA +G+ QG + + + Sbjct: 118 AGDGAR-VLDAGGAPIILDPAAGQISIGETGIVTQNGQQIAQVGVVRF-ADQGVLNKTGD 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N ++P +EDL VK+GFLE SN M E+ M+ +++ + S++ +I + ++ Sbjct: 176 NRYVAPEDAERVIEDLP--QVKQGFLESSNVRPMLEITSMMEVSRAYASVSRMIKDTDEL 233 Query: 234 MLEAI 238 +AI Sbjct: 234 SRKAI 238 >gi|17989452|ref|NP_542085.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 1 str. 16M] gi|256043051|ref|ZP_05445996.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1 str. Rev.1] gi|260564283|ref|ZP_05834768.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|265989489|ref|ZP_06102046.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1 str. Rev.1] gi|17985331|gb|AAL54349.1| flagellar basal-body rod protein flgf [Brucella melitensis bv. 1 str. 16M] gi|260151926|gb|EEW87019.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|263000158|gb|EEZ12848.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1 str. Rev.1] Length = 173 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 4/160 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF +GK Sbjct: 5 SIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFATAGK 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G VS +G + Sbjct: 62 SYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDPVSVTGNA-I 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 LD+ PI + + G I Q G + +GLY++ Sbjct: 121 LDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTI 160 >gi|328543157|ref|YP_004303266.1| flagella basal body rod protein [polymorphum gilvum SL003B-26A1] gi|326412903|gb|ADZ69966.1| Flagella basal body rod protein [Polymorphum gilvum SL003B-26A1] Length = 245 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 134/248 (54%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQK 55 M+ + I L+ Q+ L ++L A+NM+N +T GF+ ++ F E V + D K Sbjct: 1 MENAQLISLSRQVTLRRQLDVAANNMANMNTSGFKAQRLTFEEYVMPVARASEFKGGDMK 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V + + GS I TG LD A++GD W A+++ G TR+G + + G+LV Sbjct: 61 LSYVQDYQTITNFLSGSIILTGNPLDLAVDGDGWLAVQTEDGEAYTRNGALHLDNTGTLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 +A G+ PVL PIQ ++D ++ + G IS + + + L + D Q R + Sbjct: 121 TAEGR-PVLTDGG-PIQFTREDGKIDISDDGTISTELGLRGRLRLVTFDQPQN-ARAIGN 177 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + P P ++ V V +G LE+SN + E+ Q+I +T+K+ +++ L++++++ + Sbjct: 178 NLLLYDDPQP---VTRVKVIQGGLENSNVQGVVEVTQIIDITRKYETVSKLLNQSDELLR 234 Query: 236 EAIRNIAS 243 +AI + + Sbjct: 235 QAIERLGT 242 >gi|99082801|ref|YP_614955.1| flagellar basal body rod protein FlgF [Ruegeria sp. TM1040] gi|99039081|gb|ABF65693.1| Flagellar basal-body rod protein flgG [Ruegeria sp. TM1040] Length = 238 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ Q L + VA+N++N+ T G+R+ + FSE V + + +S + S Sbjct: 9 LSRQSGLLNEMQAVANNIANSATTGYRSEGLIFSEYVKSAPGQ--ESLSMGRANIRNTSL 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 E G+ T D A+EG+ +F +E+P G LTR G F +G LV+A G Y VLD Sbjct: 67 EQGTMNQTNGTFDLAIEGEGFFMVETPAGNRLTRAGNFTPNAEGDLVTADG-YRVLDAGQ 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ +P E + G G +S G+ + +GL+ D +R + G+ + L Sbjct: 126 APMFVPGGAESISFGADGTLSADGQQLGQIGLFVPDEDAQILRED--GVMFRVEGETLP- 182 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +G V +GFLE SN N+++++ +MI + + + + +D +K + AI N+ Sbjct: 183 AAGAQVLQGFLEGSNVNTIHQLARMIEVQRAYEMGQSFLDHEDKRIRSAIDNL 235 >gi|114799934|ref|YP_758986.1| flagellar basal body rod protein FlgF [Hyphomonas neptunium ATCC 15444] gi|114740108|gb|ABI78233.1| flagellar basal-body rod protein FlgF [Hyphomonas neptunium ATCC 15444] Length = 238 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 LA Q L Q + VA+N++N+ T G+++ + F+E + + + DQ +S G Sbjct: 9 LARQQGLMQEMQVVANNLANSSTTGYKSDRAIFTEFLVSTGDSPDQSLSMGGLGGHAFQL 68 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 E G TG D A++G+ +F +E+P+G LTR G F+++ G LV G PVL Sbjct: 69 EQGGLNFTGGRFDLAIQGEGFFMVETPQGERLTRAGHFQLSGAGQLVDMQGN-PVLSAGG 127 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 PI IP + GE G IS G++I +G+ D R N+ + P +D Sbjct: 128 NPITIPDDATDVSFGEDGTISGNGQIIDQVGIMLADGQ--LTRDSNTYFAAEGGVAPTQD 185 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + +G LE SN + + E+ +MI + + + + L+++ ++ + + I + Sbjct: 186 ---AKLVQGALEQSNVSPVLEVSRMIEVQRAYEAGQALLEKEDQRISQLITAV 235 >gi|260429533|ref|ZP_05783510.1| flagellar basal-body rod protein FlgF [Citreicella sp. SE45] gi|260420156|gb|EEX13409.1| flagellar basal-body rod protein FlgF [Citreicella sp. SE45] Length = 237 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 18/239 (7%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ QL L + + +A+N++N T G+R V FSE V + D ++ A+ S Sbjct: 9 LSRQLGLSREMQMIANNIANAATTGYRQQGVVFSEYV--RQTDDSGSVAMSAAHVRNTSF 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 E G+ TG +LD A+EGD +F +++P G LTR+G F V+ G LV+ G Y VLD Sbjct: 67 EQGALTRTGGQLDLAIEGDGFFLIQTPGGERLTRNGAFAVSAQGDLVTQDG-YAVLDAGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS-VDMSQ-----GFVRRENSGISPNIP 182 P+ +P + G +S KG I +G+ VD G + R ++G P Sbjct: 126 APVFVPPDASDLAFAQDGTMSSKGTPIGQVGIVQPVDQGAMVREGGVMFRADAGYEPAET 185 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P V +GF+E+SN + + ++ +MI + + + + + ++ + AI+++ Sbjct: 186 P---------RVMQGFVENSNVDPILQIARMIEVQRAYEMGQSFLQREDERVRAAIKSM 235 >gi|302383955|ref|YP_003819778.1| flagellar basal-body rod protein FlgF [Brevundimonas subvibrioides ATCC 15264] gi|302194583|gb|ADL02155.1| flagellar basal-body rod protein FlgF [Brevundimonas subvibrioides ATCC 15264] Length = 245 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 12/234 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKND-IDQKISF 58 M+ + IGL+ Q+ L + L A+N++N +T GF+ ++ VG +ND + SF Sbjct: 1 MENAAYIGLSRQMTLRRELDIAANNIANAETTGFKVEQLLLGTEVGQRARNDAVRPGASF 60 Query: 59 V---ASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVTDDGSL 114 V G+++ G+ TG LDFA++G+ A+F ++ G TRDG F + G L Sbjct: 61 VLDNGVGRDFGQ---GALNETGRTLDFAIDGEGAFFKIQDGAGEAYTRDGAFTIDPTGQL 117 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V+ SG PVL PI + +V E G ISQ G + T+ L D + + ++ Sbjct: 118 VTKSG-LPVLGDGG-PIVVDPARGALSVAEDGTISQGGAALGTLSLARFD-NLAVLSKDG 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 G+ N P D +GV V++G LE SN N++ E+ +I +T+ + T +I+ Sbjct: 175 DGLYRNASNAPALDATGVQVRQGMLEGSNVNTLVEITNLIEITRAYERATKMIE 228 >gi|163733142|ref|ZP_02140586.1| flagellar basal-body rod protein FlgF, putative [Roseobacter litoralis Och 149] gi|161393677|gb|EDQ18002.1| flagellar basal-body rod protein FlgF, putative [Roseobacter litoralis Och 149] Length = 237 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + Q L + + VA+N++N T GFR V FSE V ++ D +S Sbjct: 1 MENSGYTTITRQSGLAKEMRVVANNIANAATSGFRQEGVIFSEYVKSV--DGASSLSMGQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G TG + DFA+EGD +F +E+P G LTR G F DG LV+ G Sbjct: 59 ADARNTSFAQGGLTQTGGQFDFAIEGDGFFLVETPLGERLTRAGAFSPNADGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ IP E V G IS G + +GL QG +R + + Sbjct: 118 YRVLDAGGAPVFIPPGAEDIAVSADGTISTNGDPVGQLGLVQPLNPQGLLREDGVMFRAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E + + F+E+SN N + ++ +MI + + + + ++ ++ + +A+R Sbjct: 178 EGYEPAEQ---GRILQSFVENSNVNPILQLTRMIEVQRAYELGASFLEAEDERVRQAMRT 234 Query: 241 IA 242 I+ Sbjct: 235 IS 236 >gi|163738061|ref|ZP_02145477.1| hypothetical protein RGBS107_06604 [Phaeobacter gallaeciensis BS107] gi|161388677|gb|EDQ13030.1| hypothetical protein RGBS107_06604 [Phaeobacter gallaeciensis BS107] Length = 238 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 6/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ Q L + + VA+N++N+ T G+R V FSE + + + +S + S Sbjct: 9 LSRQSGLMREMRVVANNIANSATTGYRAEGVIFSEFIQSAPGQ--ESLSMGRANIRNTSM 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ +G +LD A+EGD +F +E+P G LTR G F G LV+ G + VLD Sbjct: 67 AQGALTQSGGDLDLAIEGDGYFMVETPMGERLTRSGAFSTNAQGDLVTMDG-HRVLDAGR 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ IP + G G +S G+ + +G++ + + +R + G+ + +ED Sbjct: 126 APVFIPGDAKSIKFGADGTLSADGRALGQIGIFKPEENYQMIRED--GVMFRVDG-EIED 182 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V +GFLE SN N++ ++ +M+ + + + + ++ ++ + AI+N+ Sbjct: 183 AGDARVLQGFLEGSNVNAISQLARMVEIQRAYEMGQSFLETEDQRVRNAIKNL 235 >gi|163742543|ref|ZP_02149929.1| flagellar basal-body rod protein FlgF [Phaeobacter gallaeciensis 2.10] gi|161384128|gb|EDQ08511.1| flagellar basal-body rod protein FlgF [Phaeobacter gallaeciensis 2.10] Length = 238 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 119/233 (51%), Gaps = 6/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ Q L + + VA+N++N+ T G+R + FSE + + + +S + S Sbjct: 9 LSRQSGLMREMRVVANNIANSATTGYRAEGIIFSEFIQSAPGQ--ESLSMGRANIRNTSM 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ +G +LD A+EGD +F +E+P G LTR G F G LV+ G + VLD Sbjct: 67 AQGALTQSGGDLDLAIEGDGYFMVETPMGERLTRSGAFSTNAQGDLVTMDG-HRVLDAGR 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ IP + G G +S G+ + +G++ + + +R + G+ + +ED Sbjct: 126 APVFIPGDAKSIKFGADGTLSADGRALGQIGIFKPEENYQMIRED--GVMFRVDG-EIED 182 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V +GFLE SN N++ ++ +M+ + + + + ++ ++ + AI+N+ Sbjct: 183 AGDARVLQGFLEGSNVNAISQLARMVEIQRAYEMGQSFLETEDQRVRNAIKNL 235 >gi|329888225|ref|ZP_08266823.1| flagellar basal-body rod protein FlgF [Brevundimonas diminuta ATCC 11568] gi|328846781|gb|EGF96343.1| flagellar basal-body rod protein FlgF [Brevundimonas diminuta ATCC 11568] Length = 245 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 12/234 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 M+ + IGL+ Q+ L + L VA+N++N DT GF+ ++ VG A ++I SF Sbjct: 1 MENAAYIGLSRQMTLRRELDIVANNVANADTTGFKVEQLMVGTEVGQRARNDNIRPSASF 60 Query: 59 V---ASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVTDDGSL 114 V G+++ G+ TG ELDF +EG+ A+F +++P G TRDG F +G L Sbjct: 61 VLDKGVGRDFGQ---GTLKQTGRELDFGIEGEGAFFTVQTPSGPAYTRDGAFVTDPEGRL 117 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 + G PVL + + PQ+ +VG G ISQ+G+ + + + D + +++ Sbjct: 118 TTKQG-LPVLADGAEIVLDPQRGPA-SVGADGTISQEGQPVGRLTVVRFD-ALSVLQKSG 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 G+ N D + V++G LE SN N++ E+ +I +++ + +T +I+ Sbjct: 175 DGLYRNASNAQPMDATDAQVRQGMLEGSNVNTLVEITNLIEISRAYERVTKMIE 228 >gi|316932824|ref|YP_004107806.1| flagellar basal-body rod protein FlgF [Rhodopseudomonas palustris DX-1] gi|315600538|gb|ADU43073.1| flagellar basal-body rod protein FlgF [Rhodopseudomonas palustris DX-1] Length = 253 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 134/254 (52%), Gaps = 17/254 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 M+ + +GL+ Q+ LE+++ VA+N++N T GF+ + F E + GA +++ D++ Sbjct: 1 MENALLVGLSRQVVLERQMDVVANNLANISTNGFKAERSMFQEFLNTGAHEDNFPRPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV Y GS T LD A++G + +++P+G TRDG K+ G LV Sbjct: 61 VSFVQDRATYHDLSTGSLQQTKNPLDIAIDGPGFLVVQTPQGERFTRDGSLKINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVI-----ATMGLYSVDMSQGF 169 ++SG +PVL PI I D+ ++ G +S +G I + + S D Q Sbjct: 121 NSSG-FPVLGTGG-PIVIQPTDKELSISPDGRVSVLEGTSIIDSLRGKLRVVSFDRPQTL 178 Query: 170 VRRENSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +++ + +P TP D+ + +++G++E SN NS+ EM +MI +T+ + I+ ++ Sbjct: 179 MKQGGNLFAPTSDQGTP--DIKSM-LRQGYVEKSNVNSVLEMTRMIDVTRTYTQISAMLQ 235 Query: 229 ENEKSMLEAIRNIA 242 + + AI + Sbjct: 236 QQSELRKAAIEKLG 249 >gi|209545588|ref|YP_002277817.1| flagellar basal body rod protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533265|gb|ACI53202.1| flagellar basal body rod protein [Gluconacetobacter diazotrophicus PAl 5] Length = 247 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 10/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQK 55 M+ + I L+ L + L A+N++N +T GF+ K FS+ + K D+ D++ Sbjct: 1 MENTTYIALSRVDVLSRALEVTANNLANANTDGFKASKELFSDYLVQQK-DVHGLPGDKE 59 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + Y + G+ TG DFA+ G+ +FA+ + +G+ LTR+G F DG++V Sbjct: 60 EVYTQDRSTYQDRLQGALRQTGNLTDFAINGEGYFAVRTTQGVRLTRNGEFNRRADGTIV 119 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 SG P++D + IP +D +V G +S + +AT+ L +VD V Sbjct: 120 DGSGN-PLIDRNGNNVVIPPRDHTLSVASDGTMSTETGRVATLDLVTVDNPNTLVPEGGY 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + P TP +++ +++G LE SN N++ E QM+ + + ++ LI Sbjct: 179 LLRPT---TPTRNVANKEIRQGMLESSNVNAVSETTQMVEIQRDYDLTFQLIQTESTRQS 235 Query: 236 EAIRNIAS 243 AI I + Sbjct: 236 NAIDKITA 243 >gi|89056685|ref|YP_512136.1| flagellar basal body rod protein FlgF [Jannaschia sp. CCS1] gi|88866234|gb|ABD57111.1| flagellar basal-body rod protein FlgF [Jannaschia sp. CCS1] Length = 240 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 5/225 (2%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 L + ++ VA+N++N T GFRT + F+E + A ND +S A+ +S + G+ Sbjct: 15 LMREMAVVANNIANISTTGFRTEGLVFAEHIAATGND-SPSLSMGAAIGRSISAQQGALE 73 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 T +E D A+EG+ +F + +P G +L+R G F D G LV+ G Y +LD PI +P Sbjct: 74 QTASEFDLAIEGEGFFLIGTPDGEVLSRAGAFIRNDAGELVTPDGYY-LLDAGGAPIFVP 132 Query: 135 QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 + V G IS G+ + +GLY + RR + + P ++ + Sbjct: 133 PQAGSVAVSSDGTISADGQPLTVVGLYLPNDPLELSRRSGTAFTVESGVQPADN---ARI 189 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +GFLE SN + + ++ +MI + + + + +D + + + +R Sbjct: 190 LQGFLEQSNVDPVAQIARMIEVQRAYELGQSFMDAEDNRIRDFLR 234 >gi|126734106|ref|ZP_01749853.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. CCS2] gi|126716972|gb|EBA13836.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. CCS2] Length = 238 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 40/250 (16%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + T+A+N++N T GFR + F+E V I D +S + Sbjct: 9 LTRQSGLLNEMQTLANNIANASTTGFRAEGIIFAEHVKTIGPDA-PSLSMATANVRNTVM 67 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ TG D A+EGD +F +E+P G LTR G F ++G LV+A G Y VLD Sbjct: 68 TQGALAQTGGTFDLAIEGDGFFLVETPGGPRLTRAGAFGPNENGDLVTADG-YAVLDAGG 126 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ +PQ +G G IS G+ I +GL IP PL+ Sbjct: 127 APVFVPQGLGPVGIGPDGTISAGGQPIGQVGLV-------------------IPTDPLQM 167 Query: 189 LSGVTVK----------------RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE- 231 + +V +GFLE SN N + ++G+MI + + + + +D+ + Sbjct: 168 VREGSVMFDARGGFEAAPDGRMLQGFLEGSNVNPILQIGRMIEVQRAYELGQSFLDKEDE 227 Query: 232 --KSMLEAIR 239 +S+++AIR Sbjct: 228 RIRSVIQAIR 237 >gi|110677662|ref|YP_680669.1| flagellar basal body rod protein FlgF [Roseobacter denitrificans OCh 114] gi|109453778|gb|ABG29983.1| flagellar basal-body rod protein FlgF, putative [Roseobacter denitrificans OCh 114] Length = 237 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + Q L + + VA+N++N T GFR V FSE V ++ D +S Sbjct: 1 MENSGYTTITRQSGLMKEMRVVANNIANAATSGFRQEGVIFSEYVKSV--DGASSLSMGQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G+ TG + DFA+EGD +F +E+P G LTR G F DG LV+ G Sbjct: 59 ADARQTSFAQGALTQTGGQFDFAIEGDGFFLVETPLGERLTRAGAFSPNADGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ IP V G IS G + +GL QG VR + + Sbjct: 118 YRVLDAGGAPVFIPPGAADIAVSADGTISTNGDPVGQLGLVQPRNPQGLVREDGVMFRAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 E + + F+E+SN N + ++ +MI + + + + ++ ++ + +A+R Sbjct: 178 ---EGYEAAEQGRILQSFVENSNVNPILQLTRMIEVQRAYELGASFVEAEDERVRQAMRT 234 Query: 241 IA 242 ++ Sbjct: 235 MS 236 >gi|254466371|ref|ZP_05079782.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium Y4I] gi|206687279|gb|EDZ47761.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium Y4I] Length = 238 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T+ ++ Q L + + +A+N++N+ T G+R + FSE V + +S Sbjct: 1 MGTAGYATISRQSGLMREMRVIANNIANSATTGYRQEGLIFSEFVQSSPGQ--PSVSMSR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S E G +TG DFA+EGD +F +E+P+G LTR G F G LV+ G Sbjct: 59 ANIFNTSMEQGQLTNTGGTFDFAIEGDGFFMIETPQGERLTRSGAFSPNAAGDLVTMDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ +P VG G +S G+++ +GL+ VR + G+ Sbjct: 118 YRVLDAGRAPVFVPPDAGKIEVGADGSLSANGRLLGQLGLFKPVEKHTLVRED--GVMFR 175 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + E+ V +GFLE SN N++ E+ +MI + + + + + ++ + AI+N Sbjct: 176 VEGDIEENFDS-KVLQGFLEGSNVNAISEVSRMIDVQRAYEMGQSFLQTEDERIRNAIKN 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|254474364|ref|ZP_05087750.1| flagellar basal-body rod protein FlgF [Ruegeria sp. R11] gi|214028607|gb|EEB69442.1| flagellar basal-body rod protein FlgF [Ruegeria sp. R11] Length = 239 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 6/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ Q L + + VA+N++N T G+R+ + FSE + + + +S + S Sbjct: 9 LSRQSGLMREMRVVANNIANAATTGYRSEGLIFSEFIQSAPGQ--ESLSMARANIRNTSL 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG +LD ALEGD +F +E+P G LTR G F G LV+ G Y VLD Sbjct: 67 AQGQLTQTGGDLDLALEGDGYFMVETPMGERLTRSGTFSTNAAGDLVTMDG-YRVLDAGR 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ +P + G G +S G+ + +G++ + + VR + G+ + +E Sbjct: 126 APMFVPGDAKSVKFGADGTLSVDGRALGQIGIFKPEQTHQMVRED--GVMFRVDG-EVEA 182 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V +GFLE SN N++ E+ +M+ + + + + ++ ++ + +AI+ + Sbjct: 183 AFETRVLQGFLEGSNVNAISEVARMVEIQRAYEMGQSFLETEDQRVRDAIKKL 235 >gi|126738579|ref|ZP_01754284.1| flagellar basal-body rod protein FlgF [Roseobacter sp. SK209-2-6] gi|126720378|gb|EBA17084.1| flagellar basal-body rod protein FlgF [Roseobacter sp. SK209-2-6] Length = 238 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ Q L + + VA+N++N+ T G+R+ + FSE V + Q +S + S Sbjct: 9 LSRQSGLMREMRVVANNIANSATTGYRSEGLIFSEYVQSSPGQ--QSLSMSRANIYNTSL 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 E G TG DFA+EG+ +F +E+P G LTR G F +G LV+ G Y V+D Sbjct: 67 EQGQLTKTGGTFDFAIEGEGFFMVETPMGERLTRAGAFSPNAEGDLVTMDG-YRVMDAGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ +P + VG G I+ G I +GL+ VR + P E+ Sbjct: 126 SPVFVPGSAQSIEVGADGTITADGNSIGQIGLFRPADKNTMVREDGVMFRVEGDIDPAEN 185 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V + +G+ E SN N++ ++ +MI + + + + ++ ++ + +AI+N+ Sbjct: 186 ---VAMLQGYTEGSNVNAIGQVTRMIEIQRAYEMGQSFLETEDRRIRDAIKNL 235 >gi|260431749|ref|ZP_05785720.1| flagellar basal-body rod protein FlgF [Silicibacter lacuscaerulensis ITI-1157] gi|260415577|gb|EEX08836.1| flagellar basal-body rod protein FlgF [Silicibacter lacuscaerulensis ITI-1157] Length = 236 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 11/243 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T++ + L+ Q L + VA+N++N +T G+R + FSE V D+ S Sbjct: 1 MDTAY-VTLSRQSGLMNEMRLVANNIANANTTGYRQQGLVFSEFV----RDLPGAPSLSM 55 Query: 61 SGKEY--LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S E G TG + DFA+EGD +F +E+P G LTR G F +G LV+ Sbjct: 56 SRGQVRNTSFEQGLLTQTGGQFDFAIEGDGFFLIETPSGNRLTRAGSFAPDANGDLVTPD 115 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G Y VLD P+ IP +VG G +S G+++ +G+Y VR ++ Sbjct: 116 G-YRVLDSNGAPVFIPPDAATIDVGGDGTLSVDGQLLGQIGVYRPTDGTNLVREASTLFR 174 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P+ P+E V + R FLE SN N++ ++ ++I + + + + ++ ++ + A+ Sbjct: 175 PDGEVEPVE--QPVVLHR-FLEGSNVNAIDQVTKLIEIQRAYELGQSFLEAEDERIRGAL 231 Query: 239 RNI 241 + + Sbjct: 232 KTL 234 >gi|118581848|ref|YP_903098.1| flagellar basal body rod protein [Pelobacter propionicus DSM 2379] gi|118504558|gb|ABL01041.1| flagellar basal body rod protein [Pelobacter propionicus DSM 2379] Length = 245 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 13/234 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ +A +R+ T+++N++N +T GF+ K+ F ++ N S A Sbjct: 1 MNSGMYAALSGSIAAMKRMDTISNNLANVNTPGFKKDKMLFESMLAGTSNPPAVPQSSTA 60 Query: 61 SG---KE--YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 KE Y+ VGS TG LDFA++GD +F +++P+G TR G F+++ DG+LV Sbjct: 61 DPIMQKESVYIDYGVGSASQTGNPLDFAIDGDGFFVIQTPQGRAYTRQGNFRLSVDGTLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF--VRRE 173 +A G +PVL V I+I Q ++ +V +GE++ G TM + VD + + + Sbjct: 121 TADG-FPVLGQDDV-IRI-QGGQV-DVNSRGEVTVDGTPTGTM-ISIVDFPKPYNLTKVS 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 ++ P P + +G ++++G LE SN +++ EM QMI T+ F++ +I Sbjct: 176 SAQFVPANPQATPQAATG-SIRQGQLEGSNVDTITEMVQMIETTRYFDACQRVI 228 >gi|89069819|ref|ZP_01157154.1| putative flagellar basal body rod protein [Oceanicola granulosus HTCC2516] gi|89044620|gb|EAR50736.1| putative flagellar basal body rod protein [Oceanicola granulosus HTCC2516] Length = 239 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 17/237 (7%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + +A+N++N T G+R+ V FSE V A+ D +S + Sbjct: 9 LTRQSGLMAEMRLIANNIANAATTGYRSEGVIFSEYVSALGPGHD-SLSMARAAVRDTDI 67 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G +TG D A+EG+ +F +++P G LTR G F +G LV+ G YPVLD Sbjct: 68 SPGGMTATGGAFDLAIEGEGFFLVQTPGGERLTRAGHFMPNANGDLVTPDG-YPVLDAGG 126 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR------RENSGISPNIP 182 P+ +P V G +S G+ + +G+ G VR R G P Sbjct: 127 APLFVPPAAASVTVAPDGVLSADGQPLGQVGVVRPRDPAGLVREDGVRFRAEGGFEP--- 183 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V V +GFLE+SN + + ++ +MI + + + +++ ++ + AIR Sbjct: 184 ------VPRVRVAQGFLEESNVDPILQVARMIEVQRAYELGQRFLEQEDERLRGAIR 234 >gi|162147479|ref|YP_001601940.1| flagellar basal-body rod protein flgF [Gluconacetobacter diazotrophicus PAl 5] gi|161786056|emb|CAP55638.1| putative flagellar basal-body rod protein flgF [Gluconacetobacter diazotrophicus PAl 5] Length = 254 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 10/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQK 55 ++ + I L+ L + L A+N++N +T GF+ K FS+ + K D+ D++ Sbjct: 8 LENTTYIALSRVDVLSRALEVTANNLANANTDGFKASKELFSDYLVQQK-DVHGLPGDKE 66 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + Y + G+ TG DFA+ G+ +FA+ + +G+ LTR+G F DG++V Sbjct: 67 EVYTQDRSTYQDRLQGALRQTGNLTDFAINGEGYFAVRTTQGVRLTRNGEFNRRADGTIV 126 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 SG P++D + IP +D +V G +S + +AT+ L +VD V Sbjct: 127 DGSGN-PLIDRNGNNVVIPPRDHTLSVASDGTMSTETGRVATLDLVTVDNPNTLVPEGGY 185 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + P TP +++ +++G LE SN N++ E +M+ + + ++ LI Sbjct: 186 LLRPT---TPTRNVANKEIRQGMLESSNVNAVSETTEMVEIQRDYDLTFQLIQTESTRQS 242 Query: 236 EAIRNIAS 243 AI I + Sbjct: 243 NAIDKITA 250 >gi|114762163|ref|ZP_01441631.1| putative flagellar basal body rod protein [Pelagibaca bermudensis HTCC2601] gi|114545187|gb|EAU48190.1| putative flagellar basal body rod protein [Roseovarius sp. HTCC2601] Length = 237 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 18/239 (7%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ Q L + + VA+N++N T G+R V FSE V + D D ++ AS S Sbjct: 9 LSRQQGLMREMRMVANNIANMATTGYRQQGVVFSEYV--RQTDRDGSVAMTASHVRNTSF 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 GS TG +LD A+EG+ +F +++P G LTR G F + G LV+ G VLD Sbjct: 67 AQGSLTRTGGQLDLAIEGEGFFLVQTPAGERLTRAGNFASSSAGDLVTQDGHL-VLDSGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR------RENSGISPNIP 182 P+ IP +G+ G +S G I +G+ VR R +G P Sbjct: 126 APVFIPPDATDLAIGQDGTLSSNGAPIGQIGIVQPLDPGALVREGGVLFRAEAGYDPAEA 185 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P V++GF+E +N + + ++ +MI + + + + ++ + AI+++ Sbjct: 186 P---------RVRQGFVESANVDPILQIARMIEVQRAYEMGQNFLQREDERVRAAIKSM 235 >gi|254511077|ref|ZP_05123144.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium KLH11] gi|221534788|gb|EEE37776.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium KLH11] Length = 236 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 120/235 (51%), Gaps = 6/235 (2%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + L+ Q L + VA+N++N +T G+R V FSE + + ++ +S + Sbjct: 6 VTLSRQSGLMNEMRMVANNIANANTTGYRQQGVVFSEFIRDMPDN--PSLSLTRAEVRNT 63 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 S + G TG DFA+EGD +F +E+P G LTR G F +G LV+ G + VL+ Sbjct: 64 SLQQGVLTETGGSFDFAIEGDGFFMVETPAGNRLTRAGSFSPNAEGDLVTMDG-HRVLNS 122 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 P+ +P +VG G +S +G+++ +G+Y+V Q VR + + P + Sbjct: 123 NGAPVFVPPDAAAIDVGSDGTLSVEGQLLGQLGVYTVADPQNLVREGRTYLR---PAGQV 179 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + + V FLE SN N++ ++ +MI + + + + +D ++ + A++ + Sbjct: 180 DPVDEPVVVHRFLEGSNVNAIGQVTRMIEIQRAYELGQSFLDAEDERVRGALKAL 234 >gi|299131784|ref|ZP_07024979.1| flagellar basal-body rod protein FlgF [Afipia sp. 1NLS2] gi|298591921|gb|EFI52121.1| flagellar basal-body rod protein FlgF [Afipia sp. 1NLS2] Length = 256 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 131/255 (51%), Gaps = 16/255 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI----DQ 54 M+ + I L+ Q+ LE++L VA+N++N T G+++ F E + GA +++ D+ Sbjct: 1 MENTTLIALSRQMTLERQLDVVANNVANVGTNGYKSDSSLFEEYLRSGAHEDNFAPGSDR 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 ++SFV G +T + LD A+ G +F +++P G TRDGRF++ G L Sbjct: 61 RVSFVQDRATVRDFSQGPLENTKSPLDVAISGKGFFTVQTPGGERYTRDGRFQINSQGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRE 173 V++SG YPVL V I D + + G I+ +G + T L F R+ Sbjct: 121 VNSSG-YPVLGTNGV-ITFQPTDHDIKITDDGTITVLEGTITQTDSLRGKLKLTSFANRQ 178 Query: 174 N-SGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 N+ P +++G TVK GF+E SN N++ EM +M+ +T+ + +I+ L+ Sbjct: 179 QLQKEGSNLFAAP-ANVTGQADTVSTVKEGFIERSNVNAIAEMSRMLEITRTYQNISNLM 237 Query: 228 DENEKSMLEAIRNIA 242 + AI+++A Sbjct: 238 QQQADLRKNAIQSLA 252 >gi|23015787|ref|ZP_00055554.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 246 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 7/246 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 MQ + I L+ Q AL +++ VA+NM+N +T F+ ++ F E + ++ I K++ Sbjct: 1 MQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAIGGKLA 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 FV G T LDFAL GD +F +E+ G+ R+G F++ G LV++ Sbjct: 61 FVQDVGVLRDTREGPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVNS 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G Y V+D PI + V G +S + +A M + + Q + +S Sbjct: 121 QG-YAVMDDRDQPIVFAPNETRVEVASDGTVSTENGRVARMKVVKFENDQLLRKAGDSLF 179 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P E + V +G +E+SN + EM +M + +++ + ++D + L+A Sbjct: 180 ETTQDP---EAVQSPNVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHERQLKA 236 Query: 238 IRNIAS 243 I+ + S Sbjct: 237 IQTLGS 242 >gi|297182937|gb|ADI19086.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0070_15B21] Length = 258 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 31/245 (12%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG--- 71 LE+++ TVA+N++N TVGF+ + F EV+ ++ + Q EYL + VG Sbjct: 14 LEKKIETVANNLANASTVGFKEDQPSFREVLSTVQRVVPQSDEENFLSHEYLDQYVGMDK 73 Query: 72 ---------------SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 F TG ELD ALE + +F++ +P+G TR G FK+ G +V+ Sbjct: 74 SAVMVDEIGKNFTTGRFRDTGNELDLALENEGFFSISTPQGERFTRAGNFKLDSQGRMVT 133 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV---IATMGLYSVDMSQGFVRRE 173 G +P+L PIQI I V E G+++ +G V + T+ + D Q Sbjct: 134 QDG-FPLLGKKG-PIQIKGNGPI-QVDENGQVAVEGTVLDQLKTVRFRNQDQLQKLGNHF 190 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF----NSITTLIDE 229 + I + P P + + V++G LE SN N++ EM +MI T+ + +IT L Sbjct: 191 YAPIRSDDVPIPSRE---IVVRQGILEQSNVNTVLEMSRMITATRSYEMVQKAITNLDSL 247 Query: 230 NEKSM 234 +EK++ Sbjct: 248 DEKAI 252 >gi|119384846|ref|YP_915902.1| flagellar basal body rod protein FlgF [Paracoccus denitrificans PD1222] gi|119374613|gb|ABL70206.1| flagellar basal body rod protein [Paracoccus denitrificans PD1222] Length = 238 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 7/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + + TVA+N++N +T GFR V FSE + + D + +A Sbjct: 1 MDNAIYAALTRQSGLMREMHTVANNIANANTTGFRREGVVFSEYM--VPLDRRGETLAMA 58 Query: 61 SGK-EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +G+ + G T + D A++G+ + +++P+G LTR G F +G LV+ G Sbjct: 59 NGRGRMIDLGPGGMTQTNGQFDLAIDGEGFLMVQTPQGNRLTRAGAFMTNAEGELVNPDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + +LD + PI IP +G G IS G + +G+++ + P Sbjct: 119 -HQLLDDGAAPIVIPAGVGSIGIGADGTISADGNPVGRVGVFASPDPARLRHEAGTLFDP 177 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 PLE G +++GFLEDSN + + E+ +MI + + + + +D+ ++ + + I Sbjct: 178 GGAVDPLE---GAVLRQGFLEDSNVDPVQEIARMIEVQRAYQLGQSFLDQEDQRIRQTIT 234 Query: 240 NI 241 ++ Sbjct: 235 SL 236 >gi|254485859|ref|ZP_05099064.1| flagellar basal-body rod protein FlgF [Roseobacter sp. GAI101] gi|214042728|gb|EEB83366.1| flagellar basal-body rod protein FlgF [Roseobacter sp. GAI101] Length = 237 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 18/240 (7%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q+ L + + VA+N++N T G+R+ V FSE V + D +S + + + Sbjct: 9 LTRQMGLAREMQMVANNIANAATTGYRSEGVIFSEFVQTV--DRGPSLSMGTANVQNTNY 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ T DF +EGD +F +E+P G LTR G F G LV+ G + VLD Sbjct: 67 MQGALTQTNGTFDFGIEGDGYFLIETPAGERLTRAGSFTPNSAGELVTYDG-FRVLDAGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS----VDMSQ--GFVRRENSGISPNIP 182 PI +PQ V G S G IA +G+ S +DM + G + R + G+ P + Sbjct: 126 GPIFVPQDAGALGVSSDGTFSVNGAPIAQLGIVSPIAPLDMVREDGVMFRADEGVEPAV- 184 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V +GF E SN +++ ++ +MI + + + + ++ ++ + A+++++ Sbjct: 185 --------NARVVQGFTEGSNVDAVSQLARMIEVQRAYEMGQSFLESEDERIRTALKSLS 236 >gi|209884527|ref|YP_002288384.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5] gi|209872723|gb|ACI92519.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5] Length = 255 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 130/254 (51%), Gaps = 15/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 M+ + + L+ Q+ LE++LS VA+N++N T G++ F E + GA +++ D++ Sbjct: 1 MENTSLVALSRQMTLERQLSVVANNVANIGTNGYKADSSLFEEYLRSGAHEDNFVGFDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV G +T LD A+ G +F +++P G +RDGR ++ G LV Sbjct: 61 VSFVHDRATLRDFGQGPLENTKAPLDVAISGKGFFTVQTPNGERYSRDGRLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGE-------KGEISQKGKVIATMGLYSVDMSQG 168 ++SG YPVL V I D + + +G I+Q + + L S Q Sbjct: 121 NSSG-YPVLGTNGV-ITFQPTDHDVKISDNGTITVLEGTITQTDSIRGRLRLTSFASPQQ 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +++E S + +D + TVK+GF+E SN N++ EM +M+ +T+ + +I+ L+ Sbjct: 179 -LQKEGSNLFTAPANVTGQDDTVSTVKQGFIERSNVNAIAEMSRMLEITRTYQNISNLMQ 237 Query: 229 ENEKSMLEAIRNIA 242 + AI+ +A Sbjct: 238 QQADLRKNAIQTLA 251 >gi|115523557|ref|YP_780468.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisA53] gi|115517504|gb|ABJ05488.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisA53] Length = 254 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 24/258 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 M+ + IGL+ Q+ LE+++ VA+N++N +T GF+ + F E + ++ D++ Sbjct: 1 MENAQLIGLSRQVTLERQMDVVANNVANMNTTGFKAERTLFEEYLSPRAHEDNFVGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V + G T LD A++G+A+ +++P G TRDG ++ G LV Sbjct: 61 VSYVQDRATFHDFSSGPLEQTKNPLDVAIDGEAFLVVQTPAGERYTRDGSLQINSQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR---- 171 +ASG Y VL PI D+ N+ G +S G +VD +G +R Sbjct: 121 TASG-YQVLGTNG-PIVFQSTDKDINIAADGNVS------VLEGTATVDSLRGKLRLVNF 172 Query: 172 -------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 +E S + + + V++GF+E SN NS+ EM +MI +T+ + ++ Sbjct: 173 ANAQQLVKEGSNLYSAAGGAAAQQDTKAQVRQGFIEKSNVNSVMEMTRMIDVTRAYTQLS 232 Query: 225 TLIDENEKSMLEAIRNIA 242 ++ + + A+ +A Sbjct: 233 AMLQQQGELRRTALEKLA 250 >gi|85706168|ref|ZP_01037263.1| flagellar basal-body rod protein FlgF [Roseovarius sp. 217] gi|85669332|gb|EAQ24198.1| flagellar basal-body rod protein FlgF [Roseovarius sp. 217] Length = 237 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 119/241 (49%), Gaps = 19/241 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+T+ L Q L + L VA+N++N T G+R + FSE V +++ +S Sbjct: 1 METAGYTTLTRQSGLLRELQVVANNIANAATTGYRQEGLIFSEFV--KRSEGGPSLSMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S G TG LD A+EG+ +F +E+P G LTR G F ++ G LV+ G Sbjct: 59 GNVRMTSTVQGPLRPTGGTLDLAIEGEGFFLIETPSGERLTRAGAFTLSAQGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLY----SVDM--SQGFVRREN 174 + VLD P+ +P + + G +S G+ +A +GL S+D+ G + R N Sbjct: 118 FRVLDAGGAPVFVPPDAKSIGLSPDGTLSDNGRPLAQIGLVRPIDSLDVIREDGVLFRTN 177 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID-ENEKS 233 G P+ED V +GFLE +N + + ++ +MI + + + + +D ENE+ Sbjct: 178 GGFE------PVED---GRVLQGFLEGANVDPIGQIARMIEVQRAYEMGQSFLDSENERV 228 Query: 234 M 234 M Sbjct: 229 M 229 >gi|260574402|ref|ZP_05842406.1| flagellar basal-body rod protein FlgF [Rhodobacter sp. SW2] gi|259023298|gb|EEW26590.1| flagellar basal-body rod protein FlgF [Rhodobacter sp. SW2] Length = 236 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 8/230 (3%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + + VA+N++N T GFR V F+E V + D + +S + + Sbjct: 9 LTRQSGLMREMQVVANNIANISTTGFRREGVVFAEYV--KRMDGEPSLSMAHATARNIDL 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 S TG DFA++GD +F +E+P+G LTR G F + +G LV+ G + +LD Sbjct: 67 GQASISQTGGAFDFAIQGDGFFLIETPQGQRLTRAGSFTPSAEGELVNPDG-FRLLDQGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 PI +P + + E G +S G+ +A +GL+ +R + + P+ED Sbjct: 126 APIFVPPDAGVVGMSEDGTLSAGGQPLARVGLWQ-PTDPNTLRHQGGTLFEAGAMEPVED 184 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + +G++EDSN N + E+ +MI + + + +D NE + + + Sbjct: 185 GQ---ILQGYIEDSNVNPISEIARMIEVQRAYELGQKFLD-NEDARVRGV 230 >gi|330809229|ref|YP_004353691.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377337|gb|AEA68687.1| Flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 236 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 16/209 (7%) Query: 19 LSTVADNMSNTDTVGF---RTIKVKFSEVVG-AIKNDIDQKISFVASGKEYLSKEVGSFI 74 L V+ N++N +TVG+ RT V S V G + +D + ++S + G+ Sbjct: 19 LKAVSQNVANANTVGYKAERTFNVMASNVAGPGVAGGLDD-----IQAQTWISTDGGALQ 73 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG D AL GDAWFA+++P G++L+RDGRF+V G LVS +G YPVL P+Q+ Sbjct: 74 HTGRATDLALSGDAWFAIKTPGGVLLSRDGRFQVDKSGYLVSRAG-YPVL-ADDGPLQV- 130 Query: 135 QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 D + + GE+S + + + + VD Q + + + + TP + V Sbjct: 131 -ADGVLKIDASGEVSVDDRPVGRLSIVRVDNPQQLLAVGDGLYAASTGITPAKSF---VV 186 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 +G LE SNA +M +M+ +++ ++ Sbjct: 187 HQGLLERSNAAMGTDMVKMMEVSRHVETM 215 >gi|149912833|ref|ZP_01901367.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. AzwK-3b] gi|149813239|gb|EDM73065.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. AzwK-3b] Length = 237 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 6/233 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + + +A+N++N T G+R + F+E V ++N IS +S Sbjct: 9 LTRQSGLLREIQVIANNIANAATTGYREESLIFAEYVKRVENG--PSISMATPSARSISS 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG LDFA+EGD +F +E+ G LTR G F ++ G L + G + VLD Sbjct: 67 LQGGLQPTGGTLDFAIEGDGFFLIEAADGNRLTRAGSFSLSAAGELATHDG-HRVLDAGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ +P V G IS +G++I +GL +R + ++ P+E Sbjct: 126 APVFLPPNATDLRVAADGTISAEGRLIGQIGLVRPLDPNDLIREGGTLFRTDVGTKPVE- 184 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G + +GFLE SN + + ++ +M+ + + + + ++ + E ++ + Sbjct: 185 --GSRILQGFLEGSNVDPIAQVARMVEVQRAYEMGQSFLENENTRIRETLKTM 235 >gi|254504490|ref|ZP_05116641.1| Flagella basal body rod protein [Labrenzia alexandrii DFL-11] gi|222440561|gb|EEE47240.1| Flagella basal body rod protein [Labrenzia alexandrii DFL-11] Length = 246 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 18/248 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQK 55 M+ IGL+ Q AL +L VA+NM+N +T GF++ ++ F E + + D+ Sbjct: 1 MENVHLIGLSRQSALRNQLDVVANNMANINTTGFKSQRLLFEEYLMPVAEATEFQTPDET 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 +S+V + + G+F TG +LD A+EG+ +F ++ G TRDG F + +G L Sbjct: 61 LSYVLDYQSITDFDTGAFKMTGNDLDLAIEGEGFFVVQMGDGTEAYTRDGAFVIDQNGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V++ G+ PV+ PI +D + + G IS + + + + S + Q ++ + Sbjct: 121 VTSDGR-PVMTTGG-PITFSAEDGSVEIAKDGTISTELGIRGVIRVASFEDPQELEKQGD 178 Query: 175 S---GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G +P IP V +G LE SN +Y++ Q+I +T+ + SIT ++ + Sbjct: 179 NLYRGENPGIPQR-------FNVVQGALERSNVEGVYQVTQLIEVTRAYESITKMLKDVN 231 Query: 232 KSMLEAIR 239 +AI+ Sbjct: 232 DLRQQAIQ 239 >gi|148266117|ref|YP_001232823.1| flagellar basal body rod protein [Geobacter uraniireducens Rf4] gi|146399617|gb|ABQ28250.1| flagellar basal body rod protein [Geobacter uraniireducens Rf4] Length = 244 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 10/232 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + L+ LA QRL +++N++N +T GF+ +++F V+ KN + Sbjct: 1 MNSGLYAALSGSLAAMQRLEVISNNLANANTPGFKGDRLQFESVLANTKNPTLTAGNLTD 60 Query: 59 --VASGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 V SG+++ + G TG LD AL+GD +F + +P+G TR G F+ G LV Sbjct: 61 LPVFSGEKFFTNYSAGPLKQTGNTLDVALDGDGFFVVNTPQGKAYTRQGSFQRDASGKLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G Y V + I + D + KG + G + T+ + + N Sbjct: 121 TGDG-YEVQGRGPITITGGRVD----INGKGGVLVDGVSVGTLEVVDFPKPYALEKIGNG 175 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 P P + ++ +VK+GFLEDSN N + EM +MI ++ F+S +I Sbjct: 176 LFIPADPQVAPQAVTTASVKQGFLEDSNVNVVTEMARMIETSRYFDSCQKVI 227 >gi|288958674|ref|YP_003449015.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288910982|dbj|BAI72471.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 240 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + ++ Q+AL+++L ++N++N +T G++ ++ F+E + K + +K+SFV Sbjct: 1 MENSIYVAMSRQMALQRQLDVTSNNIANMNTTGYKNQRMLFTEFLE--KPGLHEKVSFVQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ TG LD AL G +F +++ G TR G F++ D LV A G Sbjct: 59 DRAVVRDLSNGAMTQTGNPLDLALTGQGYFTVDTASGPRYTRAGNFRMNDQRQLVDAGG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVL PI +P V G ++ + +A + + + Q N + Sbjct: 118 LPVLSNNGQPITLPAGTSDVKVSGDGTVATELGPVAKLNIVTFKNEQLMTEVGNGLYVTD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P + V +G LE SN + EM QMI + +++ S +ID + + I+ Sbjct: 178 EQPQPAP--AETKVAQGLLEGSNVKPVVEMTQMIDIQRQYMSAQKMIDNEHERIRTMIQR 235 Query: 241 IA 242 + Sbjct: 236 LG 237 >gi|197104382|ref|YP_002129759.1| flagellar basal-body rod protein FlgF [Phenylobacterium zucineum HLK1] gi|196477802|gb|ACG77330.1| flagellar basal-body rod protein FlgF [Phenylobacterium zucineum HLK1] Length = 245 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 120/233 (51%), Gaps = 10/233 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR--TIKVKFSEVVGAIKNDIDQKISF 58 M + +GL+ Q+ L + + +A+N++N DT GF+ ++ K A+ + + F Sbjct: 1 MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + G+ T ELDFA+EG +F L+ P G TRDGRF+ + G LV+ + Sbjct: 61 VTADGVARDFGQGALRRTDGELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQN 120 Query: 119 GKYPVLDMASVPIQI-PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G PV+D I I P+K ++ +V G +SQ + I +G+++ + + ++ Sbjct: 121 GS-PVMDEGGGEIVIDPEKGQV-SVSADGVVSQGAERIGKIGMFTFETLAALEKTGDNQY 178 Query: 178 --SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + N+ P P + +++G LE SN ++ E+ +M+ +++ + +ID Sbjct: 179 RNTANLLPQPAAE---ARLRQGMLEGSNVQAILEITRMVEVSRAYERTNRMID 228 >gi|296531728|ref|ZP_06894556.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] gi|296267944|gb|EFH13743.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] Length = 252 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L+ QLAL Q++ VA+N++N T G+R + F V + ++I+FV Sbjct: 1 MDSPSTVSLSGQLALRQQMDVVANNLANATTSGYRGDRTLFQSYVTRLAVP-GREIAFVQ 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 Y+ G STG LD A+EG+A+F ++ P G TRDGRFK+ D L + G Sbjct: 60 DRATYIENRQGPIGSTGNPLDLAIEGEAFFGVQRPGGAPGYTRDGRFKIRPDNVLADSQG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKV--IATMGLYSVDMSQGFVRRENS 175 + VL PI +P++ + G I + +G+V + LY+ +G R+ Sbjct: 120 RA-VLGEGGAPITLPERISAIEIRANGNILVTSEGRVEQAGCIALYAGGDMRGL-RKSGD 177 Query: 176 GISPNIPPTPLE----DLSGVTVK--RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 G+ IP ++ D G V+ +G LE S ++ E+ + + + + S+ +I + Sbjct: 178 GLF-EIPAESVQPVDPDAPGTRVRLAQGALEGSTVQTVSELANLALVQRAYESMQRIISD 236 Query: 230 NEKSMLEAIRNIA 242 ++ + I + Sbjct: 237 DDSRIRRLIETVG 249 >gi|295688785|ref|YP_003592478.1| flagellar basal-body rod protein FlgF [Caulobacter segnis ATCC 21756] gi|295430688|gb|ADG09860.1| flagellar basal-body rod protein FlgF [Caulobacter segnis ATCC 21756] Length = 245 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 4/230 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISF 58 M + +GL+ QL L + L VA+N++N +T GF+ + V+ + A D + F Sbjct: 1 MDNALYVGLSRQLTLRRELDVVANNIANANTTGFKVEDLMVRTEQSKPAKTLDGSAPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V G+ TG + D A+EG +F +++ G TRDGRF +G LV+ S Sbjct: 61 VLDSGVARDFTQGAMTKTGGDFDLAIEGKGFFRVQTANGDRYTRDGRFTTNPEGQLVTQS 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G +PVLD PI I ++G+ G ++Q + + + D + + ++ + Sbjct: 121 G-HPVLDEGGGPINIDPTLGQVSIGKDGIVTQGAVRVGKIAVVRPD-NLASMAKDGDNLY 178 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 N L+ V +G LE SN S+ E+ ++I + + + S+ ++D Sbjct: 179 RNTTNATLQPAPDAVVHQGMLEASNVQSVLEITKLIQVQRAYESVAKMMD 228 >gi|58039418|ref|YP_191382.1| flagellar basal-body rod protein FlgF [Gluconobacter oxydans 621H] gi|58001832|gb|AAW60726.1| Flagellar basal-body rod protein FlgF [Gluconobacter oxydans 621H] Length = 246 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 8/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M+ S I L+ A ++ +S VA NMSN TVG++ V FS+ + G+ + + Sbjct: 1 MENSTYIALSRMDAQQRAMSVVAANMSNASTVGYKRENVLFSDFLSHQHGSKQPEGADTE 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S+ Y + G STG LD AL G+ +F + + G+ LTR GRF+ DG++V Sbjct: 61 SYTQDRATYRDFQQGDMQSTGNPLDLALGGEGYFQVRTANGVRLTRAGRFEEQQDGAIVD 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 +G +LD PI++PQ D + G IS + +G+ + + + Sbjct: 121 ENGN-ALLDRDGQPIELPQTDHRITISADGVISTETGEQGQIGIVTAQDNNRLQAEGSRL 179 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + + P T +E + + +G +E SN M E+ QM+ + + F+ + +D Sbjct: 180 LRSDQPTTAVERPN---IVQGMVEGSNVQMMTEVTQMMEIQRNFDFMAQFVDAEATRQKN 236 Query: 237 AIRNI 241 AI I Sbjct: 237 AIDKI 241 >gi|92116937|ref|YP_576666.1| flagellar basal body rod protein FlgF [Nitrobacter hamburgensis X14] gi|91799831|gb|ABE62206.1| flagellar basal body rod protein [Nitrobacter hamburgensis X14] Length = 255 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 126/254 (49%), Gaps = 15/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 M+ + IGL+ Q+ LE+++ VA+N++N T G++ + F E + GA +++ D++ Sbjct: 1 MENTLLIGLSRQMMLERQMDVVANNVANVTTNGYKADRSLFEEYLMPGAHEDNFVGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV + G T LD A++G A+ +++P G TRDG ++ G LV Sbjct: 61 LSFVQDRATFHDFAGGPTEQTKNPLDVAIDGKAFLVVQTPAGERYTRDGGLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDMSQG 168 +ASG PVL ++ PI Q D + G ++ + + L S +Q Sbjct: 121 TASGN-PVLG-SNGPITFQQTDHDITISNDGTVTVLEGVNNAADSIRGKLRLVSFAQAQK 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 ++ ++ S + D S V +GF+E SN N++ EM +M+ +++ + + TL+ Sbjct: 179 LLKEGSNLYSAGAGNSARPDTS-ARVHQGFIEKSNVNAVTEMSRMVEVSRAYTQMATLLQ 237 Query: 229 ENEKSMLEAIRNIA 242 + AI +A Sbjct: 238 QQSDLQRSAIEKLA 251 >gi|83312595|ref|YP_422859.1| flagellar basal body rod protein [Magnetospirillum magneticum AMB-1] gi|82947436|dbj|BAE52300.1| Flagellar basal body rod protein [Magnetospirillum magneticum AMB-1] Length = 253 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 7/244 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 MQ + I L+ Q AL +++ VA+NM+N +T F+ ++ F E + ++ + K+S Sbjct: 8 MQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAVGGKLS 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 FV G T LDFAL GD +F +E+ G+ R+G F++ G LV++ Sbjct: 68 FVQDVGVLRDTREGPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVNS 127 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G Y V+D PI + V G +S + +A + + + Q + +S Sbjct: 128 QG-YAVMDDRDQPIVFAPNETRVEVASDGTVSTENGRVARLKVVKFENDQQMRKAGDSLY 186 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P E + V +G +E+SN + EM +M + +++ + ++D L+A Sbjct: 187 ETTQEP---EVVQSPHVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHDRQLKA 243 Query: 238 IRNI 241 I+ + Sbjct: 244 IQAL 247 >gi|149203126|ref|ZP_01880097.1| hypothetical protein RTM1035_20326 [Roseovarius sp. TM1035] gi|149143672|gb|EDM31708.1| hypothetical protein RTM1035_20326 [Roseovarius sp. TM1035] Length = 237 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+++ L Q L + L VA+N++N T G+R + FSE V + + +S Sbjct: 1 MESAGYTTLTRQSGLLRELQVVANNIANAATTGYRQEGLIFSEFV--KRTEGGPSLSMAR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S G TG LD A+EGD +F +E+P G LTR G F ++ G LV+ G Sbjct: 59 GNVRMTSTLQGPLTPTGGMLDLAIEGDGFFLIETPAGERLTRAGSFTLSAQGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD P+ IP + G +S G+ +A +GL G +R + + Sbjct: 118 FRVLDAGGAPVFIPPDASSIGLSPDGTLSDNGRPLAQIGLVRPIDRVGMIREDGVMFHAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+E+ GV + +GFLE +N + + ++ +MI + + + + +D + + A+ + Sbjct: 178 GGFEPVEE--GV-IHQGFLEGANVDPIGQVARMIEVQRAYEMGQSFLDTEHERVTSALDS 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|152990358|ref|YP_001356080.1| flagellar basal-body rod protein FlgF [Nitratiruptor sp. SB155-2] gi|151422219|dbj|BAF69723.1| flagellar basal-body rod protein FlgF [Nitratiruptor sp. SB155-2] Length = 238 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 15/230 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK-FSEVVGAIKNDIDQKISFV 59 +Q ++ + A A+EQ L TV +N++N +T GF+ + VK S+ + D + F Sbjct: 5 LQATYVLASGASRAMEQ-LDTVTNNLANVNTTGFKEMVVKEMSQRLDENGGDSNHLFVFP 63 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + L+ G T LDFALEG +F ++ LTR+G F + ++G LV +G Sbjct: 64 RFKESILNFAQGPLKHTQNRLDFALEGKGFFIVQKGDQKFLTRNGHFLINNEGLLVDQNG 123 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI-- 177 Y +LD A P+++ K EI NV E G I Q G + + + + D N I Sbjct: 124 HY-LLDTADKPVRLEGKSEI-NVTEDGSIYQNGAFVTKLQIKNYD---------NVTIIG 172 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 P E V++G+LE SN N + EM +MI ++F+ +I Sbjct: 173 DTYYEPQGNELTVDAKVRQGYLESSNINPLMEMTEMIMAQRRFDMYGNMI 222 >gi|310816830|ref|YP_003964794.1| flagellar basal-body rod protein FlgF, putative [Ketogulonicigenium vulgare Y25] gi|308755565|gb|ADO43494.1| flagellar basal-body rod protein FlgF, putative [Ketogulonicigenium vulgare Y25] Length = 237 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 10/233 (4%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + +A+N++N +T G+R V FSE V + Q +S + Sbjct: 9 LTRQTGLLHEMRAIANNIANANTTGYRAEGVAFSEYVVRLGPQ-SQSLSLATARVRQTDF 67 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G +TG D A+EG+ +F ++ P G +LTR G F + DG L+SA G YP+LD Sbjct: 68 SQGDIGATGASFDLAIEGEGFFMIDHPEGPMLTRAGAFTLGPDGVLLSADG-YPLLDAGE 126 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI--SPNIPPTPL 186 P+ IP + +G G IS G VI +GL++ R +G N+P Sbjct: 127 APVMIPAEAGPVLIGADGTISAGGDVIGQIGLFTPTDPLSVTRTSGTGFFSDDNMP---- 182 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L G +++G LE SN N++ ++ +MI + + + +L D ++ + ++ Sbjct: 183 -YLEG-QIRQGHLEGSNVNAIAQIARMIEVQRAYEFGQSLADREDERIRSTVQ 233 >gi|254292906|ref|YP_003058929.1| flagellar basal-body rod protein FlgF [Hirschia baltica ATCC 49814] gi|254041437|gb|ACT58232.1| flagellar basal-body rod protein FlgF [Hirschia baltica ATCC 49814] Length = 255 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 20/257 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 M S IGL+ Q L +++ A+N++N +T GF+ + E+ A D I+F Sbjct: 1 MDNSLAIGLSTQQLLRKKMDVTANNLANMNTTGFKVEHLVNHEISDRPARATDKPHDITF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + GS TG LD A++G+ +F +E+ G I TRDG F + DG LV+ Sbjct: 61 TQGWQLQRDMNNGSIAQTGNPLDVAIDGNGFFEVEAENGDIFYTRDGEFSMNPDGMLVTR 120 Query: 118 SG-----KYPVLD-----MASVPIQI-PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 +G + VLD VPI + P+ EI + + G I Q G + + L + ++ Sbjct: 121 NGYLLRGEGEVLDGEKLLANGVPIALNPEGGEIV-INKDGSIMQDGAQLGQLKLKTFELP 179 Query: 167 QGFVRRENS-GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + + N+ IS P + T+ +GF+E SN +++ EM QMI +++ + S+ Sbjct: 180 EALEKVGNNLYISGEQEPID----ANATLAQGFVESSNVSAIVEMTQMIEISRAYQSVAK 235 Query: 226 LIDENEKSMLEAIRNIA 242 LI + +AI +A Sbjct: 236 LISNSNDMREKAINKLA 252 >gi|148240969|ref|YP_001220470.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] gi|146411345|gb|ABQ39798.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] Length = 244 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 16/239 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M + I L+ +ALE+RL VA+N++N DT GFR ++ F E + G ++ Sbjct: 1 MGETTTIHLSRLIALERRLDNVANNVANADTTGFRARQLSFQEYLSPAKEGEANGKRERP 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S V +G +Y G+ TG LD A+ GD +FA+++P+G TR G G LV Sbjct: 61 VSLVNAGLQYPDSAGGAIQLTGNPLDVAIVGDGYFAVQTPQGERYTRAGSLTTDATGRLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD---MSQGFVRR 172 + G P+L PI + + + G IS + I ++ L D + G Sbjct: 121 TMDG-LPILSRTG-PITVAPGERSLTIASDGTISSSQRTIGSLRLVRFDGPLQAMGSNLF 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 E+ + NIP V + G LE SN ++ EM ++ +T+ + + L+ ++ Sbjct: 179 ESRSPALNIP------TGSVKLLVGDLEKSNVQNVQEMSRLSEVTRSYEQVGGLLKNSQ 231 >gi|297183135|gb|ADI19278.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0200_39L23] Length = 258 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 27/235 (11%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG-- 71 LE+++ TVA+N++N TVGF+ + F EV+ ++ + Q EYL + VG Sbjct: 13 VLEKKIETVANNLANVSTVGFKEDQPSFREVLSTVQRVVPQSEEENFLSHEYLDEYVGMD 72 Query: 72 ----------------SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 F TG ELD +LE + +F + +P+G TR G FK+ G +V Sbjct: 73 KSAVMVDEIGKNFTTGRFRDTGNELDLSLENEGFFTITTPQGDRYTRAGNFKLDSQGRMV 132 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV---IATMGLYSVDMSQGFVRR 172 + G +P+L PIQI I V E G++ +G + + T+ + D Q Sbjct: 133 TQDG-FPLLGKKG-PIQIKGNGPI-QVDENGQVVVEGTIMDQLKTVRFRNQDQLQKLGNH 189 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + I + P P + + V++G LE SN N++ EM +M++ T+ + + I Sbjct: 190 FYAPIRSDDVPIPSRE---ILVRQGMLEQSNVNTVMEMSRMVNATRSYEMVQKAI 241 >gi|83594174|ref|YP_427926.1| hypothetical protein Rru_A2842 [Rhodospirillum rubrum ATCC 11170] gi|83577088|gb|ABC23639.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 245 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 11/240 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 M+ + I L+ Q AL ++L V++N++N +T G++ + FSE + ++ + +K++ Sbjct: 1 MENTSYIALSRQTALWRQLDVVSNNLANMNTNGYQAEQTLFSEYLMNTRDSHFRLPEKLA 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + Y G TG LD A+ G+ +F +E G TR GRF + +G +V+A Sbjct: 61 YTQDAGTYRDLTAGPLEHTGNPLDLAINGEGYFEVEDGAGPAYTRGGRFTLDAEGKVVTA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G+ P++ A P+ I + + G +S + + + L S + Q +RR G+ Sbjct: 121 DGR-PLMTDAGTPLVIAPNEGEVTISATGTVSTENGPVGKLRLVSFEDEQK-LRRIGGGL 178 Query: 178 --SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID-ENEKSM 234 S + P+ + +++G +E SN N + EM +MI + + + + LI+ EN++ + Sbjct: 179 FDSGDQQANPITE---PRIEQGMIEKSNVNPVVEMTRMIQVQRSYEAANKLIESENDRQL 235 >gi|56695101|ref|YP_165448.1| flagellar basal body rod protein FlgF [Ruegeria pomeroyi DSS-3] gi|56676838|gb|AAV93504.1| flagellar basal-body rod protein FlgF [Ruegeria pomeroyi DSS-3] Length = 216 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 20/227 (8%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 +A+N++N+ T G+R + FSE V G + +S S+E G TG + Sbjct: 1 MANNIANSATSGYRQQGLVFSEFVRGGLGT---SSLSMARGQVRNTSQEQGVLTQTGGDF 57 Query: 81 DFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF 140 D A++G+ +F LE+P G LTR G F G LV+ G Y ++D PI +P + Sbjct: 58 DLAIDGEGFFMLETPGGERLTRAGSFTPNAQGDLVNPDG-YRLIDANGAPIFVPPDIDGV 116 Query: 141 NVGEKGEISQKGKVIATMGLYSVDMSQGFVR------RENSGISPNIPPTPLEDLSGVTV 194 +G G IS G+++ +GL+ G +R R + G P + G ++ Sbjct: 117 RIGPDGTISGAGRLLGQIGLFKPVDPHGLIREGGVFFRADDGTEP---------IEGASI 167 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +GFLE SN N++ ++ +++ + + + + + ++ + A+ ++ Sbjct: 168 MQGFLEGSNVNAIDQVARLVEVQRAYELGQSFLQAEDERIRNAVNSL 214 >gi|254562217|ref|YP_003069312.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] gi|254269495|emb|CAX25461.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] Length = 246 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G + AL GDA+ A+++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G D PI I Q++ + G IS + + L + +Q + Sbjct: 121 TSDGHAVQGDGG--PITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S P P +GV ++ G LE SN + EM +++ + + ++ ++++I + Sbjct: 179 LFSSEAPARPAG--AGVHLEPGALERSNVKPVVEMTRLMDVNRTYSMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|322421663|ref|YP_004200886.1| flagellar basal-body rod protein FlgF [Geobacter sp. M18] gi|320128050|gb|ADW15610.1| flagellar basal-body rod protein FlgF [Geobacter sp. M18] Length = 238 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 12/223 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L L+ ++RL +++N++N T GF+ +++F ++ ++KN + V Sbjct: 1 MNAGMYAALTGNLSAQRRLDVISNNLANASTTGFKADQIQFESILASVKNSTEGP---VF 57 Query: 61 SGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 S Y + G T LD ALEGD +F + +P+G TR G F G LV+A G Sbjct: 58 SNDRYSTDFSSGGLQRTDNALDVALEGDGFFVVNTPQGTAYTRQGNFHRGPGGKLVTADG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +V + K EI G G++S G V+ + + VD + + E +G Sbjct: 118 YEVQGGGGTVTLNGGSKIEI---GSNGQVSVDGNVVGNIAV--VDFPKPYA-LEKAGNGL 171 Query: 180 NIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMIHLTQKF 220 +P P + T VK+G+LE SN + EM +MI ++ F Sbjct: 172 YLPANPQTATTASTAGVKQGYLESSNVKVVVEMARMIEASRYF 214 >gi|148258452|ref|YP_001243037.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] gi|146410625|gb|ABQ39131.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] Length = 246 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 15/233 (6%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQKISFVAS 61 I L+ +AL++RL A+N++N+ T G+R ++ F E + I ++ +S V + Sbjct: 8 ISLSRLMALQRRLDVAANNVANSQTTGYRAKQLAFQEYLKPDKPPEIGEKPERPLSLVDA 67 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + S G+F STG LD A+ G+A+FA+++ +G TRDG F + G LV+ G Sbjct: 68 ALPFTSSASGAFRSTGNPLDLAINGNAYFAIQTSQGERYTRDGSFSLDAKGRLVTLEG-L 126 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG---IS 178 PVL V I +P + + G +S + + + L S D R E +G + Sbjct: 127 PVLGDKGV-ITVPPRAGEITIDPSGRVSMQQVELGKLKLVSFDPG---ARLEAAGGNLLR 182 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 PP + TV + LE SN EM ++ L + + + L+ +++ Sbjct: 183 SAQPPK--ANAGSATVLQAMLEQSNVQPTIEMSRLAELNRSYEVASKLLKDSQ 233 >gi|114765245|ref|ZP_01444377.1| hypothetical protein 1100011001307_R2601_00410 [Pelagibaca bermudensis HTCC2601] gi|114542380|gb|EAU45408.1| hypothetical protein R2601_00410 [Roseovarius sp. HTCC2601] Length = 249 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 14/251 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---QKIS 57 M S + ++ ALE++L A+N++N ++ GF+ +V F + K+D + + Sbjct: 1 MDNSTYVAISKLTALERQLDVTANNIANANSSGFKAERVLFETYL--QKDDASLAGEGTN 58 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 +V Y+ G + TG LD AL G WFA E P G + RDG+ + G + + Sbjct: 59 YVLDRGSYVDDTPGVVVQTGNPLDLALTGQGWFAYEMPDGRMAYGRDGQLVLDAQGQVTT 118 Query: 117 ASGKYPVLDMASVPIQIPQK-DEIFNVGEKGEISQ-KGKVIATMGLYSVDMSQGFVRREN 174 ASG +LD+ P+ IP + + + G IS +G V+ +G++ + Q R Sbjct: 119 ASGAQ-ILDLGGAPLNIPPEFAASVTISDDGVISSPEGGVMGQVGIFELPDRQTLSRGGA 177 Query: 175 SGISPNIPPTPLE-DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 PN L D +G +V +G +E SN + E+ ++I++ Q + L+ DE Sbjct: 178 GMFVPNAEAQGLAPDETGSSVIQGAVESSNVQPVTEVTRLINIQQAYQHALNLVASDDEL 237 Query: 231 EKSMLEAI-RN 240 +K ML I RN Sbjct: 238 KKEMLTRIGRN 248 >gi|163744348|ref|ZP_02151708.1| hypothetical protein OIHEL45_02155 [Oceanibulbus indolifex HEL-45] gi|161381166|gb|EDQ05575.1| hypothetical protein OIHEL45_02155 [Oceanibulbus indolifex HEL-45] Length = 247 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 8/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +I ++ +L+++L A+N++N T G++ V F ++ D + +FV+ Sbjct: 1 MTESSHISMSLATSLQRQLDITANNIANASTAGYKGEHVVFEALLQNNTAMGDDQAAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 Y+ G+ TG LD AL G+ WF+ E+ G RDG F + G+L SG Sbjct: 61 DTGSYIDTRPGALSQTGNPLDVALHGEGWFSYETADGQQAYGRDGSFTLDTQGNLTLLSG 120 Query: 120 KYPVLDMASVPIQIPQKD-EIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRENSG- 176 VLD PIQ+P + N+ E G IS + + +G++ V Q + +R +G Sbjct: 121 A-KVLDAGGAPIQLPTEGLGDINISEDGTISGSETGPLGRIGVFDVPEIQSY-KRLGAGM 178 Query: 177 -ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 ++P P S V V++G LE SN N + EM ++I + + + T++ + Sbjct: 179 LVAPEGAAKPAVAES-VQVRQGTLELSNVNPVREMTRLIDVQRAYERTNTMMGNADDLRR 237 Query: 236 EAIRNIA 242 ++++ IA Sbjct: 238 DSLKRIA 244 >gi|75675315|ref|YP_317736.1| flagellar basal body rod protein FlgF [Nitrobacter winogradskyi Nb-255] gi|74420185|gb|ABA04384.1| Flagellar basal body rod protein [Nitrobacter winogradskyi Nb-255] Length = 255 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 126/254 (49%), Gaps = 15/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 M+ + IGL+ Q+ LE+++ +A+N++N T G++ F+E + GA +++ D++ Sbjct: 1 MENTLLIGLSRQMMLERQMDVIANNVANVTTNGYKADHSLFNEYLMPGAHEDNFVGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV + G T LD A++G+A+ +++P G TRDG ++ G LV Sbjct: 61 LSFVQDRATFHDFAGGPTEQTKNPLDVAIDGNAFLVVQTPNGERYTRDGGLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDMSQG 168 +A G +PVL ++ PI+ Q D + + G ++ + + L S Q Sbjct: 121 TAGG-HPVLG-SNGPIRFQQTDRNITISDDGTVTVIEGINNATNAIRGRLRLVSFPQVQR 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 V +E S + + + +GF+E SN N++ EM +++ +++ + + TL+ Sbjct: 179 LV-KEGSNLYAAGEGNFARQDTQARINQGFIERSNVNAVTEMSRLVEVSRAYTQMATLLQ 237 Query: 229 ENEKSMLEAIRNIA 242 + AI +A Sbjct: 238 QQSDLQRSAIEKLA 251 >gi|218531221|ref|YP_002422037.1| flagellar basal body rod protein FlgF [Methylobacterium chloromethanicum CM4] gi|218523524|gb|ACK84109.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] Length = 246 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRTDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G + AL GDA+ A+++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G D PI I Q++ + G IS + + L + +Q + Sbjct: 121 TSDGHAVQGDGG--PITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S P P G ++ G LE SN + EM +++ + + ++ ++++I + Sbjct: 179 LFSSEAPARPAG--PGAHLEPGALERSNVKPVVEMTRLMDVNRTYSMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|163852465|ref|YP_001640508.1| flagellar basal body rod protein FlgF [Methylobacterium extorquens PA1] gi|163664070|gb|ABY31437.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] Length = 246 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L GS + AL GDA+ +++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGSVEPDSNPMHVALRGDAFLTVQTPQGLRYTRNGAFELDATGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G D PI I Q++ + G IS + + L + +Q + Sbjct: 121 TSDGHAVQGDGG--PITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFPNAQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S P P G ++ G LE SN + EM +++ + + ++ ++++I + Sbjct: 179 LFSSEAPARPAG--PGAHLEPGALERSNVKPVVEMTRLMDVNRTYSMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|326404070|ref|YP_004284152.1| flagellar basal-body rod protein FlgF [Acidiphilium multivorum AIU301] gi|325050932|dbj|BAJ81270.1| flagellar basal-body rod protein FlgF [Acidiphilium multivorum AIU301] Length = 247 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 116/245 (47%), Gaps = 8/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 MQ + I L+ L + + +A+N++N T G+ ++ + + + ++N + Sbjct: 1 MQNTSTIILSRMLTASRNVDVIANNIANVSTPGYESMHLASTTWLDHMRNVTAPPGGSTL 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 ++ S + + G+ +TG LD AL G +F +++P G LTRDG+F + DG++ + Sbjct: 61 AYTQSNGTWRDERPGAIRNTGNALDLALPGGGYFTVQTPNGPRLTRDGQFNLMPDGTIAN 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 A+G Y +L PI +P + + G IS +I +G+ +V Q + + Sbjct: 121 ANG-YSLLSTNGQPITVPPQSGTLTIAADGTISTPQGIIGQVGVVTVPDQQSLTAQGRNL 179 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + TP+ D + V+ G +E+SN + E+ MI ++ + + + + Sbjct: 180 FKAST--TPIPDPNPQIVQ-GAIEESNVQPVVEITNMIQASRNYEMLAQFLASEKNRSQT 236 Query: 237 AIRNI 241 AI I Sbjct: 237 AISQI 241 >gi|254446126|ref|ZP_05059602.1| conserved domain protein [Verrucomicrobiae bacterium DG1235] gi|198260434|gb|EDY84742.1| conserved domain protein [Verrucomicrobiae bacterium DG1235] Length = 250 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 12/242 (4%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDID---QKISFVASGK 63 AA LE +++A N++ + T G++ + F V IKN Q S G Sbjct: 10 AAMTGLENWNNSIAQNIAQSSTPGYKKAMLSFEGVEAGSVGIKNSFGNTLQHASIQTKGV 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + GS ++T E DFALEGD +F L + G ++ TRDG+FK+ D G LVS G + Sbjct: 70 GAVDFSSGSIVTTNGEFDFALEGDGFFELRADDGQLVYTRDGQFKMNDQGELVSKQGFHV 129 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG--ISPN 180 + D ++ IP + G + Q G+ +A M + V+ + ++ R N G + PN Sbjct: 130 MSDTRNIIQLIPDGGRL-QAANDGTLRQGGQKVAEMSIRGVENPE-YMIRSNGGFILGPN 187 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + V+ G LE SN ++ EM +I++++ F +I +++ + +AI+ Sbjct: 188 -NEEAARHIEAPFVRHGSLEQSNVSATTEMINLINVSRSFQINQRVIQQHDDVLGKAIQT 246 Query: 241 IA 242 + Sbjct: 247 LG 248 >gi|170742326|ref|YP_001770981.1| flagellar basal body rod protein FlgF [Methylobacterium sp. 4-46] gi|168196600|gb|ACA18547.1| flagellar basal body rod protein [Methylobacterium sp. 4-46] Length = 248 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 MQ + IGL+AQ+AL + L +A+NM+N T GF+ F E + D++ Sbjct: 1 MQNAQLIGLSAQMALGRELEVIANNMANVSTTGFKGRTTHFQEYLMPKARAETFRMPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G STG L+ A+ GDA+FA+++P+G TR+G F++ G LV Sbjct: 61 LSYVIDAGTPLDLAQGPIESTGNPLNAAIRGDAFFAVQTPQGERYTRNGAFELNAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G VL PIQI ++ +G G +S + L + + + Sbjct: 121 TSDGNL-VLGEGG-PIQINPQETGLAIGADGTVSTSQGNRGRIRLVAFADPRQLTNAGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + + PP P L+ ++ G LE SN + + M +M+ + + + + I + Sbjct: 179 LYAASAPPRPAGPLA--RIEPGALERSNVSPVLTMTRMMEVNRVYALVADTIARMDSLRG 236 Query: 236 EAIRNIA 242 AI+ +A Sbjct: 237 SAIQRLA 243 >gi|225871944|ref|YP_002753398.1| putative flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] gi|225793888|gb|ACO33978.1| putative flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] Length = 245 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 18/228 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKND--IDQKI- 56 M++ + L LA Q L +VA N++N T GFR + F +V+ G ND +DQ + Sbjct: 1 MESGYYAALTGLLARSQALDSVASNLANAGTAGFRAQQDYFRDVLAGPRANDSQLDQTVD 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 ++ G L G +TG LD A++G +F +++P G+ TRDGR + G L++ Sbjct: 61 NYGVLGGTLLDLAQGPIQATGNPLDLAIQGGGFFEVQTPNGVRYTRDGRLVRSTKGVLIT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G PVL+ PI +P + +GE G IS G + + ++ ++ E G Sbjct: 121 GDGD-PVLNAKGKPIVLPTGRPV--IGEDGTISVDGAIAGKIAVFQFAGARDL---EAEG 174 Query: 177 ISPNIP-----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + P P P +G T+++G LE SN + ++ +I + ++ Sbjct: 175 VGLYRPVGKAKPAP---ATGFTLRQGALEGSNQDVIHGTMDLIFVQRQ 219 >gi|126730135|ref|ZP_01745947.1| flagellar basal body rod protein [Sagittula stellata E-37] gi|126709515|gb|EBA08569.1| flagellar basal body rod protein [Sagittula stellata E-37] Length = 237 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 6/239 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+T+ I L+ Q +L + + +A+N++N +T GFR + FSE + + D +S A Sbjct: 1 METAGYIALSRQSSLLREMQVIANNIANANTTGFRQEGMIFSEYLS--EGDRLDSVSMAA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S G TG+ D A+EG+ +F + +P G LTR G F + +G LV+ G Sbjct: 59 GRIHKTSFAQGELEPTGSAYDLAIEGEGFFLVGTPNGERLTRAGAFSPSAEGLLVTPDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVLD PI +P + + G +S G+ I +G+ VR + Sbjct: 119 -PVLDGGGAPIFVPPDATDLAIAQDGTLSTGGRPIGQIGVVRPVDELAMVREGSQLFDAT 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P+++ V +GF E SN +++ ++ +M+ + + + + + ++ + +AI+ Sbjct: 178 AGFEPVDN---PRVMQGFTEASNVDTVLQLARMVEVQRAYELGQSFSEREDERIRDAIK 233 >gi|77464905|ref|YP_354409.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides 2.4.1] gi|77389323|gb|ABA80508.1| putative flagellar basal body rod protein [Rhodobacter sphaeroides 2.4.1] Length = 239 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + + +VA+N++N T GFR + F+E V ++ + ++ ++ + L++ Sbjct: 9 LTRQSGLMREMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASASARQIDLTQ 68 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG DFA+ G+ +F +E+P+G LTR G F +G LV A G +LD + Sbjct: 69 --GGLTHTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNR-LLDAGA 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ IP + G +S + I +GL+ G + S P E Sbjct: 126 APLFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRHEGGTRFSAEGGTEPAE- 184 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G T+ +G LEDSN + E+ +MI + + + + +D + + +R + Sbjct: 185 --GATLVQGALEDSNVEPVSEIARMIEVQRAYEMGQSFLDREDDRIRTTVRTLG 236 >gi|240139802|ref|YP_002964279.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|240009776|gb|ACS41002.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] Length = 246 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 17/251 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSSRFQEYLMPVASADSFQRSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G + AL GDA+ A+++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G D PI I Q++ + G IS + + L + +Q + E + Sbjct: 121 TSDGHAVQGDGG--PITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQAL-KSEGA 177 Query: 176 GI----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + +P P P G ++ G LE SN + EM +++ + + ++ ++++I + Sbjct: 178 NLFSSEAPGRPAGP-----GAHLEPGALERSNVKPVVEMTRLMDVNRTYSMVSSVISRLD 232 Query: 232 KSMLEAIRNIA 242 AIR +A Sbjct: 233 DLRGTAIRRLA 243 >gi|188582487|ref|YP_001925932.1| flagellar basal body rod protein FlgF [Methylobacterium populi BJ001] gi|179345985|gb|ACB81397.1| flagellar basal body rod protein [Methylobacterium populi BJ001] Length = 246 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQAALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G G + AL GDA+ A+++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDGNPMHVALRGDAFLAVQTPQGVRYTRNGAFELNAQGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G Y V PI I Q++ ++ G +S + + L + Q + Sbjct: 121 TSDG-YAVQGDGG-PITIGQQETGLSIAPDGTVSTNLGIRGRLRLVTFANPQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S + P G ++ G LE SN + EM +++ + + + ++++I + Sbjct: 179 LFSSDAPARAAG--PGQHLEPGALERSNVKPVVEMTRLMDVNRTYTMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|189426331|ref|YP_001953508.1| flagellar basal body rod protein [Geobacter lovleyi SZ] gi|189422590|gb|ACD96988.1| flagellar basal body rod protein [Geobacter lovleyi SZ] Length = 258 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 16/257 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ LA +RL ++ N++N T GF+ ++ F V+ +N S A Sbjct: 1 MNSGMYSALSGNLAAMKRLDVISSNLANASTNGFKQDRLAFESVLAGNRNPPAVPPSQTA 60 Query: 61 SG-----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + G+ + TG LD AL+GD +F + +P G+ TR G F++ DG+L+ Sbjct: 61 DPVLLQERMLTDYSAGTLVQTGNTLDVALQGDGFFVVRTPEGVAYTRQGNFRLASDGTLI 120 Query: 116 SASGKYPVLDMA------SVPIQIPQKDEIFN----VGEKGEISQKGKVIATMGLYSVDM 165 +A G Y VL A PI+I + V +G I+ G+ +A + L+ Sbjct: 121 TADG-YQVLSKAGERPEDGQPIRIDVAGQDGGGRPVVDSQGGITINGEPVANLALFDFPK 179 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + ++ P TV +G LE SN N++ EM QM+ ++ F + Sbjct: 180 PYQLTKTASTLFVPAAGTAVQAAGPLTTVAQGALEQSNVNTIAEMVQMVDASRYFETCQR 239 Query: 226 LIDENEKSMLEAIRNIA 242 ++ + +A+ ++A Sbjct: 240 VVRSFDDMAAKAVNDLA 256 >gi|126463747|ref|YP_001044861.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides ATCC 17029] gi|126105411|gb|ABN78089.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 239 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + + +VA+N++N T GFR + F+E V ++ + ++ ++ + L++ Sbjct: 9 LTRQSGLMREMQSVANNIANISTTGFRREGIVFTEHVKRLEGEASLSMASASARQIDLTQ 68 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG DFA+ G+ +F +E+P+G LTR G F +G LV A G +LD + Sbjct: 69 --GGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNR-LLDAGA 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ IP + G +S + I +GL+ G + S P E Sbjct: 126 APLFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRHEGGTRFSAEGGTEPAE- 184 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G T+ +G LEDSN + E+ +MI + + + + +D + + +R + Sbjct: 185 --GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRTLG 236 >gi|256830177|ref|YP_003158905.1| flagellar basal-body rod protein FlgF [Desulfomicrobium baculatum DSM 4028] gi|256579353|gb|ACU90489.1| flagellar basal-body rod protein FlgF [Desulfomicrobium baculatum DSM 4028] Length = 258 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 128/259 (49%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-------ID 53 MQ S + L + RL ++A+N++N +T GF++ K+ F + +D + Sbjct: 1 MQDSSYSAVFGALTQQHRLDSIANNLANVNTTGFKSEKLAFRDTFRRYAHDMVDPNTTLT 60 Query: 54 QKISFVAS---GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 K+ + + + +S+ V G STG LD A+ GD +F +++P G +TR G Sbjct: 61 DKVPWPQANLLAQPRISEAVIDMSQGPMKSTGNPLDLAIAGDGFFRVQTPEGEFMTRQGV 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 + ++ +G +V A G L A P+Q+P+ + V G S G++I T+ L V+ Sbjct: 121 YHLSAEGFVVDAHGNQ--LLGAGGPLQVPEGGAVL-VDADGGFSVNGELIDTIELVRVED 177 Query: 166 SQGFVRRENS--GISP--NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + + NS I P + P ED TV++GFLE +N N + EM MI + F Sbjct: 178 PRALEKVGNSLLRIRPGADAQAIPAED---STVEQGFLEAANVNVVSEMVNMIEAMRAFE 234 Query: 222 SITTLI----DENEKSMLE 236 + +I ++++K++ E Sbjct: 235 AYQKMISGSFEQDKKAIAE 253 >gi|332559803|ref|ZP_08414125.1| FlgF2 [Rhodobacter sphaeroides WS8N] gi|332277515|gb|EGJ22830.1| FlgF2 [Rhodobacter sphaeroides WS8N] Length = 239 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + + +VA+N++N T GFR + F+E V ++ + ++ ++ + L++ Sbjct: 9 LTRQSGLMREMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASASARQIDLTQ 68 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG DFA+ G+ +F +E+P+G LTR G F +G LV A G +LD + Sbjct: 69 --GGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGNR-LLDAGA 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ IP + G +S + I +GL+ G + S P E Sbjct: 126 APLFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRHEGGTRFSAEGGTEPAE- 184 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G T+ +G LEDSN + E+ +MI + + + + +D + + +R + Sbjct: 185 --GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRTLG 236 >gi|254470342|ref|ZP_05083746.1| flagellar basal-body rod protein [Pseudovibrio sp. JE062] gi|211960653|gb|EEA95849.1| flagellar basal-body rod protein [Pseudovibrio sp. JE062] Length = 246 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 12/249 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQK 55 M+ + IGL+ Q AL + L VA+N++N +T G++ ++ F E + D+ Sbjct: 1 MENAQLIGLSRQSALRRNLDVVANNLANINTTGYKAQRLIFEEYLMPTAQATEFQRPDRP 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 +SF GS TG LD A+EGD + A+ G TR G + +G+L Sbjct: 61 LSFTQDVGTATVLTQGSIQLTGNPLDVAIEGDGYLAVTGAEGEQFYTRAGSLAIDPEGTL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V+ G PVL PIQI +D + ++G IS I + +Y+ D Q + Sbjct: 121 VT-DGGLPVL-ADGAPIQINPEDGEITITKEGVISTGQGEIGRLDVYTFDNRQEL-KHVG 177 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + + P P + TV +G LE SN + E+ +MI +T+++ S++ ++ + + Sbjct: 178 VNLFSGLNPIPANN---PTVIQGALEGSNVEGVREISRMIEITRQYQSVSKMMSQRNELR 234 Query: 235 LEAIRNIAS 243 +IR + S Sbjct: 235 QRSIRELGS 243 >gi|94987182|ref|YP_595115.1| flagellar basal body rod protein [Lawsonia intracellularis PHE/MN1-00] gi|94731431|emb|CAJ54794.1| Flagellar basal body rod protein [Lawsonia intracellularis PHE/MN1-00] Length = 264 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 28/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFV 59 MQ + GL A L+ E R++ +A+N++N +T G++ K+ F + + +D I + I+ V Sbjct: 1 MQQAKFSGLFAALSAEHRMNFIANNLANVNTAGYKQDKLAFKDTMIQFAHDQIREPIATV 60 Query: 60 ASGKEYLSKE---------------VGSFISTGTELDFALEGD-AWFALESPRGIILTRD 103 S + GS TG LDFA+ G+ +F ++SP+G LTR+ Sbjct: 61 RSKPLFPEPNNAARVRIAVSNTDFAQGSMQFTGNPLDFAITGENGFFRIQSPQGNYLTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F + G LV+ G +PVL PI IP+ + ++ G I + T+ S+ Sbjct: 121 GSFVLDATGQLVTKQG-WPVLGDGG-PITIPEGTKKISITPDGRIFADDAEVGTIQFVSL 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 D + + E G + P LE + +G + +GFLE SN N + EM +MI + Sbjct: 179 DDVK---KLEKVGANLYRPKEGLEIIEGNANETGAIINQGFLESSNVNVVEEMVKMIEVN 235 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 ++F++ ++ ++ EA + Sbjct: 236 RQFDAYQKVMQTSDSLDREAYSKV 259 >gi|90423018|ref|YP_531388.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisB18] gi|90105032|gb|ABD87069.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB18] Length = 254 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 132/262 (50%), Gaps = 27/262 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 M+ + IGL+ Q+ LE+++ VA+N++N +T GF+ K F E + GA +++ D++ Sbjct: 1 MENALLIGLSRQMTLERQMDVVANNVANVNTTGFKADKSLFQEYLSPGAHEDNFIGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V + G T LD A++G+A+ A+++P G TRDG ++ G LV Sbjct: 61 VSYVQDRATFHDFSSGPLEQTKNPLDVAIDGNAFLAVQTPAGERFTRDGGLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR---- 171 +ASG Y VL + P EI I+ G V G +VD +G +R Sbjct: 121 TASG-YQVLGTNGPIVFQPTDKEI-------TIADDGNVTVLEGSSAVDSLRGKLRLVNF 172 Query: 172 -------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 +E S + P + V +G++E SN N++ EM +MI +T+ + I+ Sbjct: 173 AEAQRLLKEGSNLYSAGPGAAAQPALTARVHQGYIEKSNVNAVAEMSKMIEVTRAYTQIS 232 Query: 225 TLIDEN---EKSMLEAIRNIAS 243 +++ + K+ LE + ++ + Sbjct: 233 SMLQQQGDLRKTALEKLADVPA 254 >gi|170747255|ref|YP_001753515.1| flagellar basal body rod protein FlgF [Methylobacterium radiotolerans JCM 2831] gi|170653777|gb|ACB22832.1| flagellar basal body rod protein [Methylobacterium radiotolerans JCM 2831] Length = 246 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 13/249 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G+++Q+AL++ L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSSQMALQRELDVIANNMANVSTTGFKARNTRFEEYLMPVASADSFARPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G TG L+ A++G A+ A++SP+G TR+G F++ G+LV Sbjct: 61 LSYVIDQGTTLDLGQGPIEQTGNPLNVAVKGSAFIAVQSPQGERYTRNGAFELDAQGTLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G Y V+ PI I ++ +G G +S + + L + Q R N Sbjct: 121 TSDG-YKVVGEGG-PISINPQETGLAIGPDGTVSTNLGIRGRIKLVTFANPQ---RLTNE 175 Query: 176 GISPNIPPTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G + P P +G+ ++ LE SN + EM +++ + + + ++++I + Sbjct: 176 GANLYASPEPAR-AAGIDGRLEPESLERSNVRPVIEMTRLMDVNRSYAMVSSMISRLDDL 234 Query: 234 MLEAIRNIA 242 AIR +A Sbjct: 235 RGTAIRRLA 243 >gi|16126302|ref|NP_420866.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus CB15] gi|221235079|ref|YP_002517515.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus NA1000] gi|13637950|sp|Q06171|FLGF_CAUCR RecName: Full=Flagellar basal-body rod protein flgF gi|13423542|gb|AAK24034.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus CB15] gi|220964251|gb|ACL95607.1| flagellar basal-body rod protein flgF [Caulobacter crescentus NA1000] Length = 245 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISF 58 M + +GL+ Q+ L + L VA+N++N +T GF+ + V+ + A D + F Sbjct: 1 MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + G TG + D A+ G +F +++ G TRDGRF +G LV+ + Sbjct: 61 VMDTGVARNFTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQA 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI- 177 G PVLD I I + VG+ G +SQ + +GL D F + ++ Sbjct: 121 GA-PVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDNLYR 179 Query: 178 -SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID---ENEKS 233 + N P P+ D + +G LE SN + E+ ++I + + + S+ ++D E +S Sbjct: 180 NTTNTAPQPVTD---AQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMDNTAELSRS 236 Query: 234 MLEAIRNI 241 +E + I Sbjct: 237 AVERLGKI 244 >gi|221640826|ref|YP_002527088.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides KD131] gi|221161607|gb|ACM02587.1| Hypothetical Protein RSKD131_2727 [Rhodobacter sphaeroides KD131] Length = 239 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + + +VA+N++N T GFR + F+E V ++ + ++ ++ + L++ Sbjct: 9 LTRQSGLMREMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASASARQIDLTQ 68 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG DFA+ G+ +F +E+P+G LTR G F +G LV + G +LD + Sbjct: 69 --GGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDSDGNR-LLDAGA 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P+ IP + G +S + I +GL+ G + S P E Sbjct: 126 APLFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRHEGGTRFSAEGGTEPAE- 184 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G T+ +G LEDSN + E+ +MI + + + + +D + + +R + Sbjct: 185 --GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRTLG 236 >gi|315649858|ref|ZP_07902941.1| fagellar hook-basal body protein [Paenibacillus vortex V453] gi|315274832|gb|EFU38213.1| fagellar hook-basal body protein [Paenibacillus vortex V453] Length = 274 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 36/254 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQ--- 54 M S + + AL+QRL +ADNM+N +T G++ + F +V+ ++ D D+ Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFDDVLTQVQGHHKDFDRTGR 60 Query: 55 --KISFVASGKEYLSK-----EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + LS E G+ TG D ++G A FA++ I TR+G F Sbjct: 61 STPLGYTLGYGMRLSSVVQNMEQGAMKETGNPFDLMIDGQAMFAVQGDGAIGYTREGGFH 120 Query: 108 VTDDGS-----LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIAT 157 VT D L++ S YPVLD+ + PI P K ++ V EKG+I + ++AT Sbjct: 121 VTPDARNPNNLLLANSQGYPVLDVNNNPISFPSKGKVA-VNEKGQIILETFAGVRSIVAT 179 Query: 158 MGLYSVDMSQGFVRRENS------GISPN-----IPPTPLEDLSGVTVKRGFLEDSNANS 206 + + ++ +G V ++ G++ PP P E +V GF+E SN N Sbjct: 180 LKVVELERPEGLVAVGDNLFVVGEGLTEGDVFDLTPPAPGEPPKS-SVLSGFVEQSNVNL 238 Query: 207 MYEMGQMIHLTQKF 220 EM +M+ + + + Sbjct: 239 TDEMTKMMEVQRAY 252 >gi|91204384|emb|CAJ70884.1| strongly similar to flagellar hook protein [Candidatus Kuenenia stuttgartiensis] Length = 250 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 4/205 (1%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLSKEVGSFISTG 77 + +A N++N +TVG++ F V KN + S GK G TG Sbjct: 28 AVIARNLANVNTVGYKKNIAVFESFVAGAKNQAKEASEGTGSSLGKVATDFSPGVMQFTG 87 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ELD A++GD +F +++ GI TR G+F ++ D ++V+ G +P++ PIQIP K Sbjct: 88 NELDLAIKGDGFFEVQTKAGIAYTRSGQFMLSRDRTVVTPEG-WPLMSSGG-PIQIPAKA 145 Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 + F G +S GK I+ + + + G S + P V + +G Sbjct: 146 QSFTFKTDGSVSVDGKTISKLNIVNFLNPDGLTSIGGSAYVASDKANPTTADGTVEIAQG 205 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNS 222 +LE SN N + EM MI + F S Sbjct: 206 YLEKSNVNVIDEMVNMIANMRSFQS 230 >gi|39936960|ref|NP_949236.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris CGA009] gi|192292788|ref|YP_001993393.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris TIE-1] gi|39650817|emb|CAE29340.1| putative flagellar basal-body rod protein flgF [Rhodopseudomonas palustris CGA009] gi|192286537|gb|ACF02918.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1] Length = 253 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 133/254 (52%), Gaps = 17/254 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 M+ + +GL+ Q+ LE+++ VA+N++N +T GF+ + F E + GA +++ D++ Sbjct: 1 MENALLVGLSRQVVLERQMDVVANNLANLNTNGFKAERSVFQEFLNTGAHEDNFARPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV Y G+ T LD A++G + +++P+G TRDG + G LV Sbjct: 61 VSFVQDRATYHDLSTGALQETKNPLDVAIDGKGFLVVQTPQGERFTRDGSLTINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVI-----ATMGLYSVDMSQGF 169 + SG +PVL PI I D+ ++ G +S +G I + + + D Q Sbjct: 121 NGSG-FPVLGTGG-PIVIQPTDKELSISPDGRVSVVEGTSIIDSLRGKLRVVTFDRPQSL 178 Query: 170 VRR-ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +++ N + + TP D + V++G++E SN NS+ EM +MI +T+ + I+ ++ Sbjct: 179 IKQGGNLFAATSDQGTP--DTKSM-VRQGYVEKSNVNSVLEMTRMIDVTRTYTQISAMLQ 235 Query: 229 ENEKSMLEAIRNIA 242 + + AI +A Sbjct: 236 QESELRKTAIEKLA 249 >gi|262652|gb|AAB24738.1| flagellar basal body proximal rod protein [Caulobacter vibrioides] Length = 248 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 8/232 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISF 58 M + +GL+ Q+ + + L VA+N++N +T GF+ + V+ + A D + F Sbjct: 1 MDNALYVGLSRQMTVRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + G TG + D A+ G +F +++ G TRDGRF +G LV+ + Sbjct: 61 VMDTGVRRNFTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQA 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI- 177 G PVLD I I + VG+ G +SQ + +GL D F + ++ Sbjct: 121 GA-PVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDNLYR 179 Query: 178 -SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + N P P+ D + +G LE SN + E+ ++I + + + S+ ++D Sbjct: 180 NTTNTAPQPVTDAQ---IHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMD 228 >gi|91976615|ref|YP_569274.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5] gi|91683071|gb|ABE39373.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5] Length = 244 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 12/237 (5%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--NDIDQ--KISFVASG 62 IGL+ +AL+Q++ +A N++N +T GF+ ++F E + K +DI K S VA Sbjct: 7 IGLSRLIALQQQVDNLARNVANQNTTGFKREGIRFLEYLTDAKEADDIPSAPKRSLVAV- 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 Y GS TG D A+ GD +F + + RG TR+G F + G LV+ SG Sbjct: 66 TGYTDFSAGSLQLTGNSTDAAVLGDGFFVVRTSRGDRYTRNGAFTLDKQGRLVTLSGDLV 125 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 + A+ I++P D ++G G IS +I + + D + V + P Sbjct: 126 L--AANGTIKVPLTDVNLSIGTDGTISTARSIIGRLRVVKFDDPRSLVAEGTGLFASGSP 183 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI----DENEKSML 235 P L + + + LE SN NS+ EM ++ T+ + + ++ D NE L Sbjct: 184 PIEL-NAGSIRLATNALERSNVNSIREMSDLVAATRAYEQVANVVLKDGDPNELKTL 239 >gi|254419855|ref|ZP_05033579.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196186032|gb|EDX81008.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 246 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 19/238 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 M+ + IGL+ Q+ L + L VA+N++N DT GF+ ++ VG A + I SF Sbjct: 1 MENAAYIGLSRQMTLRRELDIVANNVANADTTGFKVEQLMVGTEVGQRARNDSIRPSASF 60 Query: 59 V---ASGKEYLSKEVGSFISTGTELDFALEGDAWF--ALESPRGIILTRDGRFKVTDDGS 113 V G+++ GS TG LDFA+ G+ F + G TRDG F + +G Sbjct: 61 VLDNGVGRDFGQ---GSMSETGRPLDFAIAGEGAFFTVRDGAAGEAYTRDGAFTMDPEGR 117 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 L + G+ VL + + P +VG G I+Q G++ + + D + G + + Sbjct: 118 LTTKQGQ-AVLGGGAEIVLDPALGAP-SVGADGTITQSGQITGRLSVVRFD-TLGVLEKG 174 Query: 174 NSGI---SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 G+ N+ P D V + +G LE SN NS+ E+ +I +++ + SIT +I+ Sbjct: 175 GDGLYRNGSNVQPVEAND---VQIHQGSLEASNVNSLTEITNLIEISRAYESITRMIE 229 >gi|302343756|ref|YP_003808285.1| flagellar basal-body rod protein FlgF [Desulfarculus baarsii DSM 2075] gi|301640369|gb|ADK85691.1| flagellar basal-body rod protein FlgF [Desulfarculus baarsii DSM 2075] Length = 231 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 25/211 (11%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 + + A+N++N T GF+ ++ F +++ + ++ F GS T Sbjct: 19 RHMDVTANNLANVSTTGFKGDRLIFDDMLSR-----EMQVDF----------SQGSLQET 63 Query: 77 GTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI-PQ 135 G LD AL GD +F + +P G LTR G FK+ +G+LV++ G + VLD A P+ + P Sbjct: 64 GNPLDVALSGDGFFMIRTPGGDRLTRSGAFKMDANGALVTSEG-HAVLDSAGQPVTLNPS 122 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV---RRENSGISPNIPPT-PLEDLSG 191 ++F + +G +SQ G +AT+ + V R SG +PPT P D Sbjct: 123 GGQVF-IDSEGNVSQDGAQVATLAVVEVQNKAALQKDGRTAFSGADGQLPPTAPAAD--- 178 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 V V +G LE SN + +M MI + F S Sbjct: 179 VVVNQGSLEMSNVTVVDQMVNMITAQRAFES 209 >gi|220924579|ref|YP_002499881.1| flagellar basal body rod protein FlgF [Methylobacterium nodulans ORS 2060] gi|219949186|gb|ACL59578.1| flagellar basal body rod protein [Methylobacterium nodulans ORS 2060] Length = 248 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 MQ + IGL+AQ+AL + L +A+NM+N T GF+ +F E + D++ Sbjct: 1 MQNAQLIGLSAQVALGRELEVIANNMANVSTTGFKARTTRFQEYLMPKASAETFRRPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G +TG L+ A+ GDA+FA+++P+G TR+G F++ G LV Sbjct: 61 LSYVIDAGTPLDLSQGPIETTGNPLNAAIRGDAFFAVQTPQGERYTRNGAFELNAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G + D PIQ ++ +G G IS + L Q N+ Sbjct: 121 TSDGNLVLGDGG--PIQFNPQETGAAIGPDGTISTNQGNRGKLRLVRFSDPQAL---SNA 175 Query: 176 GIS-PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G + PL + V+ G +E SN + + M +M+ + N I L+ ++ S Sbjct: 176 GANLYAATAAPLPAGTQARVEPGAVERSNVSPVLTMTRMMEV----NRIYALVSDS-VSR 230 Query: 235 LEAIRNIA 242 ++A+R A Sbjct: 231 MDALRGSA 238 >gi|325295398|ref|YP_004281912.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065846|gb|ADY73853.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 238 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 11/228 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFV 59 +Q + + + A+EQ L T A+N++N +T GF+ I+ + S+ + K D + + F Sbjct: 5 LQALYVLAAGGERAVEQ-LDTAANNIANINTPGFKKLIEEEMSQHIPDNKGDANNLLIFP 63 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 ++ E G+ T LD AL+G+ +FA+++ G + TR+G F + +G LV + G Sbjct: 64 RFKATHIVLEQGTLQKTDNPLDLALKGNGFFAVKTKTGELYTRNGHFFLNAEGKLVDSKG 123 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 PVLD++ I + K+E ++ E G + Q K +A + + + Q +S + Sbjct: 124 N-PVLDISDKEILL-IKNEPIHITEDGVVYQGNKKVAVLKIVNF---QSVKPIGDSYYAG 178 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 N P P E V +GFLE SN + + EM ++I+ ++F LI Sbjct: 179 NGTPLPTE----AKVLQGFLESSNVDPVKEMVELINAQRRFEIYGNLI 222 >gi|253702433|ref|YP_003023622.1| flagellar basal-body rod protein FlgF [Geobacter sp. M21] gi|251777283|gb|ACT19864.1| flagellar basal-body rod protein FlgF [Geobacter sp. M21] Length = 237 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 9/242 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ L+ ++RL +++N++N++T GF+ +++F V+ +KN + + Sbjct: 1 MNSGIYAALSGNLSAQRRLDVISNNLANSNTAGFKADQIQFESVLANVKNPTQTPV--FS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G+ T LD AL+GD +F + +P+G TR G F + G LV+A G Sbjct: 59 NDRYSTDYSPGALQRTENALDLALDGDGFFVVNTPQGPAYTRQGNFFRSQAGRLVNADG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF-VRRENSGISP 179 + V K E V GE+ G +AT L VD + + + + G+ Sbjct: 118 FEVQGSGGAIAIGGGKVE---VSGNGEVVVNGATVAT--LSKVDFPKPYQLTKIGGGLFV 172 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + TVK+G+LE SN + EM +MI ++ F + T + + +A+ Sbjct: 173 PANPQAAPAPTAATVKQGYLESSNVKVVVEMARMIEASRYFETCTKAVKSYDDMTAKAVN 232 Query: 240 NI 241 + Sbjct: 233 EL 234 >gi|209964689|ref|YP_002297604.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] gi|209958155|gb|ACI98791.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] Length = 240 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ I L+ Q A+ +++ VA+N++N +T GF++ + F E + + +++SFV Sbjct: 1 MENVLYIALSRQEAMRRQMDVVANNIANMNTSGFKSQRPLFLEYL-ERPDRRQERMSFVQ 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G T LD AL GD +FA+E+ G TR G F++ D LV +G Sbjct: 60 DYGLMRNLQAGPVTVTDNPLDVALRGDGYFAVETLAGPRYTRAGGFQLNTDRELVDRNG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVL A I IP + G I + +A + + S D Q S Sbjct: 119 LPVLSDAGARIVIPDGANQIRIKGDGSIETEQGPLARLKVVSFDDEQKMQELGGGLYSTE 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+E V +G LE SN + E QMI + + + + +ID + + AIR Sbjct: 179 QEERPVEKPE---VTQGALEGSNVQPIVETTQMIDVLRAYQNTQRMIDSEHERLRTAIRQ 235 Query: 241 IA 242 + Sbjct: 236 LG 237 >gi|167038783|ref|YP_001661768.1| flagellar basal body rod protein [Thermoanaerobacter sp. X514] gi|256751340|ref|ZP_05492219.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus CCSD1] gi|300913632|ref|ZP_07130949.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X561] gi|307723353|ref|YP_003903104.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X513] gi|166853023|gb|ABY91432.1| flagellar basal body rod protein [Thermoanaerobacter sp. X514] gi|256749722|gb|EEU62747.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus CCSD1] gi|300890317|gb|EFK85462.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X561] gi|307580414|gb|ADN53813.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X513] Length = 251 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 127/240 (52%), Gaps = 25/240 (10%) Query: 19 LSTVADNMSNTDTVGF-RTIKVKFS----EVVGAIKNDI--DQKISFVASG----KEYLS 67 + +A+N++N +TVG+ R + V S EV ++I + KI + G + + Sbjct: 19 MDVLANNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNIPPNGKIGRMDYGVLVDTFHTN 78 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 E G+F T +LDFA++G+ +F +++P G TRDG F ++ DG LV+ G +++ Sbjct: 79 FEEGAFSQTNGKLDFAIDGNGFFVVDTPNGQRYTRDGSFTLSKDGHLVTKEGY--IVEGE 136 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI-----SPNIP 182 + PIQ+ Q D +V E G I G+++ + + D G +R+E + + S N+ Sbjct: 137 NGPIQLSQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDG-LRKEGNNLFFIDNSTNVQ 193 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P+ +K+GFLE SN NS+ EM MI + + + S ++ ++++ +A+ + Sbjct: 194 VIPVTG----KIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVNEVG 249 >gi|114777904|ref|ZP_01452818.1| hypothetical protein SPV1_05764 [Mariprofundus ferrooxydans PV-1] gi|114551691|gb|EAU54243.1| hypothetical protein SPV1_05764 [Mariprofundus ferrooxydans PV-1] Length = 247 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 119/233 (51%), Gaps = 22/233 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKIS--FVASGK 63 G+A Q+A + +L +A N++N ++VG+ + FS + + + K S ++ + Sbjct: 9 GVAGQMA-QNKLDGIAHNLANVNSVGYMEDRTSFSSMFSGKMSREGVPSKTSAAYLTAST 67 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 +Y+S + G+ T +LDF++ GD +F ++ G LTR G FK+ +G+L++ SG Sbjct: 68 QYVSTQAGNIRQTNNDLDFSVHGDGYFRIQMKDGTEALTRAGNFKLDAEGNLLNQSG-LA 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ------GFVRRENSG 176 VLD PIQ+P + + G + G+ +A +G+ + S+ G + R Sbjct: 127 VLDKNGGPIQLPVGK--ISATDNGSLYVNGQPVAELGISMIKDSRQIQKVAGVLIRTG-- 182 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 NI P ++V +G LED+N NS+ M Q++ + + S+ + ++ Sbjct: 183 -QDNIQPAN----GSISVHQGELEDANVNSVLAMTQIVDTMRNYQSMMKVAEQ 230 >gi|85715053|ref|ZP_01046038.1| Flagellar basal body rod protein [Nitrobacter sp. Nb-311A] gi|85698250|gb|EAQ36122.1| Flagellar basal body rod protein [Nitrobacter sp. Nb-311A] Length = 255 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 129/254 (50%), Gaps = 15/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI---DQK 55 M+ + IGL+ Q+ LE+++ VA+N++N +T G++ + F E + GA +++ D++ Sbjct: 1 MENALLIGLSRQMMLERQIDVVANNVANVNTNGYKADRSLFEEYLMPGAHEDNFVGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV + G T LD A++G+A+ +++P G TRDG ++ G LV Sbjct: 61 LSFVQDRATFHDFAGGPTEQTKNPLDVAIDGEAFLVVQTPNGERYTRDGGLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDMSQG 168 +ASG YPVL ++ PI+ Q D + G ++ + T+ L S Q Sbjct: 121 TASG-YPVLG-SNGPIRFQQTDRDITISADGTVTVIEGLNNSTNSIRGTLRLVSFRQPQK 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + +E S + + + + +GF+E SN +++ EM +M+ +++ + + TL+ Sbjct: 179 LI-KEGSNLYAAGESNFAQPDTKSQIHQGFIERSNVSAVTEMSRMVQVSRAYTQMATLLQ 237 Query: 229 ENEKSMLEAIRNIA 242 + AI +A Sbjct: 238 QQSDLQRTAIEKLA 251 >gi|149194279|ref|ZP_01871376.1| flagellar basal-body rod protein [Caminibacter mediatlanticus TB-2] gi|149135454|gb|EDM23933.1| flagellar basal-body rod protein [Caminibacter mediatlanticus TB-2] Length = 262 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 128/249 (51%), Gaps = 25/249 (10%) Query: 17 QRLSTVADNMSNTDTVGFR-------TIKVKFSEVVGAI--KNDIDQKISFVASG----- 62 RL+ +++N++N +T GF+ T + F + + +N+ + F+ Sbjct: 17 NRLNQISNNLANVNTNGFKQDSLIIGTFERLFKQTRDKLPLENNTKEAAKFLNRNLNKVP 76 Query: 63 ---KEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +EY + +G+ I T LD AL+ +++F L++P G +TRDG F + ++G LV+ Sbjct: 77 QIVEEYTNFSLGNMIKTSNPLDIALKNKNSFFVLDTPSGDKITRDGAFSLDENGFLVNKK 136 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G + VLD+ PI++P+ + + I G+ + T+ + S+D + +++ + + Sbjct: 137 G-FKVLDINDKPIKLPKNTKNITIDNDANIYINGEKLTTLKIVSIDNLKD-IKKVGNNMW 194 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI---HLTQKFNSI-TTLIDENEKSM 234 +P + + T+ +GF+E SN N + EM +I L +++ + TT +D+ K Sbjct: 195 DFVPGSEIISTKNTTI-QGFIEKSNVNVIKEMTDLIETNRLVEQYQKVMTTFMDDLNKDA 253 Query: 235 LEAIRNIAS 243 +E + N+ + Sbjct: 254 IEKLANVRA 262 >gi|224372658|ref|YP_002607030.1| flagellar basal-body rod protein [Nautilia profundicola AmH] gi|223589304|gb|ACM93040.1| flagellar basal-body rod protein [Nautilia profundicola AmH] Length = 261 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 26/248 (10%) Query: 18 RLSTVADNMSNTDTVGFRTIKV-------KFSEVVG--AIKNDIDQKISFVASG------ 62 RL+ +++N++N +T GF+ + FSE ++N+ + F+ Sbjct: 18 RLNVISNNLANVNTAGFKQDDIIIGDFERLFSEKRDNLPLENNTKEAAKFINRNLNKVPI 77 Query: 63 --KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +EY + ++G T LD AL E + +FA+ +P G LTR G F + +G LV+ G Sbjct: 78 VVEEYTNYDIGDLQKTSNPLDIALKEKNQFFAINTPNGEKLTRAGNFNLDANGYLVTKDG 137 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 Y VLD + PIQ+ + + + G I Q + +AT + +D + +++ + Sbjct: 138 -YQVLDEQNNPIQLAPSYPV-TIDKNGNIYQNNEKVATFKIVKID-NLNTLKKVGDNMFD 194 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI---HLTQKFNSI-TTLIDENEKSML 235 IP T D T+ +GFLE SN N + EM +I L +++ + TT +D+ + + Sbjct: 195 FIPDTATIDTKNSTL-QGFLEKSNVNPIREMTDLIETNRLVEQYQKVMTTFMDDLNRDAI 253 Query: 236 EAIRNIAS 243 E + N+ + Sbjct: 254 EKLANVRA 261 >gi|146278638|ref|YP_001168797.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides ATCC 17025] gi|145556879|gb|ABP71492.1| Flagellar hook protein FlgE-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 239 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 18/237 (7%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L Q L + + ++A+N++N T GFR V F+E V + D + +S ++ ++ Sbjct: 9 LTRQSGLMREMQSIANNIANLSTTGFRREGVVFTEHVKRL--DGEASLSMASASARHVDL 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG DFA+ GD +F +E+P+G LTR G F +G LV G +LD Sbjct: 67 SQGGLTHTGATFDFAIMGDGFFLIETPQGEHLTRAGSFTPDAEGELVDMDGNR-LLDEGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS----VDM-SQGFVR-RENSGISPNIP 182 P+ IP + G +S G+ I +GL+ +D+ +G R +G+ P Sbjct: 126 APVFIPPDARDVVLASDGTLSSGGQPIGRIGLWQPTEPLDLRHEGGTRFSAEAGVEP--- 182 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G ++ +G LE+SN + E+ +MI + + + +D + + +R Sbjct: 183 ------AAGASLIQGSLEESNVAPISEISRMIEVQRAYELGQGFLDREDDRIRNTVR 233 >gi|297543693|ref|YP_003675995.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841468|gb|ADH59984.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 251 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 14/179 (7%) Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 E GSF T +LDFA++G+ +F +++P G TRDG F +++DG LV+ G ++ + Sbjct: 80 EEGSFTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLSNDGYLVTQEGY--IVQGEN 137 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI-----SPNIPP 183 PI++ Q D +V E G I G+++ + + D G +R+E + + S N+ Sbjct: 138 GPIELSQGD--ISVDEMGNIKNNGQLVDRLRIVDFDNYDG-LRKEGNNLFFIDNSANVQV 194 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P +K+GFLE SN NS+ EM MI + + + S ++ ++++ +A+ + Sbjct: 195 IPATG----RIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVNEVG 249 >gi|167038474|ref|YP_001666052.1| flagellar basal body rod protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116869|ref|YP_004187028.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857308|gb|ABY95716.1| flagellar basal body rod protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929960|gb|ADV80645.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 251 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 122/240 (50%), Gaps = 25/240 (10%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFS-----EVV--GAIKNDIDQKISFVASG----KEYLS 67 + +A+N++N +TVG++ V S EV G + KI + G + + Sbjct: 19 MDVLANNLANVNTVGYKRDVVVTSPFPNFEVTRHGGDNTPPNGKIGTMDYGVLVDTFHTN 78 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 E G+F T +LDFA++G+ +F + +P G TRDG F ++ DG LV+ G +++ Sbjct: 79 FEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSFTLSKDGYLVTQEGY--IVEGE 136 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI-----SPNIP 182 + PIQ+ Q D +V E G I G+++ + + D G +R+E + + S N+ Sbjct: 137 NGPIQLSQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDG-LRKEGNNLFFIDNSANVQ 193 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P +K+GFLE SN NS+ EM MI + + + S ++ ++++ +A+ + Sbjct: 194 VIPATG----KIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVNEVG 249 >gi|144897831|emb|CAM74695.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Magnetospirillum gryphiswaldense MSR-1] Length = 273 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 121/241 (50%), Gaps = 7/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 M+ + I L+ Q AL ++L +A NM+N +T G+++ ++ F E + ++ +K+S Sbjct: 30 MENTSYIALSRQNALWRQLDVIAGNMANANTPGYKSEQMMFREYLMDTRSSDRATGKKLS 89 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 +V G+F T LD AL D +F +E+ G+ TR+G F++ + G LV++ Sbjct: 90 YVQDIGLLRDTREGAFTKTDNPLDLALHNDGFFQVETEAGMRYTRNGHFRLDEGGMLVNS 149 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G V+D PI + + V G +S + ++A + + Q + +S Sbjct: 150 QGA-AVMDTGDNPIILAPNETRITVTPDGSVSTENGIVAKIKVVRFANDQDMRKIGDSLY 208 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P + ++ ++ +G +E+SN + E+ +M + +++ ++ ++++ + ++A Sbjct: 209 ETTQDP---DTIARPSIVQGMMEESNVQPVVEITKMTEVLRQYQALQNILEKEHERQMKA 265 Query: 238 I 238 + Sbjct: 266 M 266 >gi|307266108|ref|ZP_07547653.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter wiegelii Rt8.B1] gi|306918890|gb|EFN49119.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter wiegelii Rt8.B1] Length = 251 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 25/240 (10%) Query: 19 LSTVADNMSNTDTVGF-RTIKVKFS----EVV--GAIKNDIDQKISFVASG----KEYLS 67 + +A+N++N +TVG+ R + V S EV G + KI + G + + Sbjct: 19 MDVLANNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNTPPNGKIGRMDYGVLVDTFHTN 78 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 E G+F T +LDFA++G+ +F + +P G TRDG F ++ DG LV+ G +++ Sbjct: 79 FEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSFTLSKDGYLVTQEGY--IVEGE 136 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI-----SPNIP 182 + PIQ+ Q D +V E G I G+++ + + D G +R+E + + S N+ Sbjct: 137 NGPIQLSQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDG-LRKEGNNLFFIDNSANVQ 193 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P +K+GFLE SN NS+ EM MI + + + S ++ ++++ +A+ + Sbjct: 194 VIPATG----KIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVNEVG 249 >gi|197120124|ref|YP_002140551.1| flagellar basal body rod protein FlgF [Geobacter bemidjiensis Bem] gi|197089484|gb|ACH40755.1| flagellar basal body rod protein FlgF [Geobacter bemidjiensis Bem] Length = 238 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ L+ ++RL +++N++N++T GF+ +++F V+ +KN Q F Sbjct: 1 MNSGIYAALSGNLSAQRRLDVISNNLANSNTSGFKADQIQFESVLANVKNPTQQAPVF-- 58 Query: 61 SGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 S Y + G+ T LD AL+GD +F + +P+G TR G F + G LV+A G Sbjct: 59 SNDRYSTDYSPGAMQRTENALDVALDGDGFFVVNTPQGPAYTRQGNFFRSQAGRLVNADG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF-VRRENSGIS 178 + V K EI GE+ G + T L VD + + + + G+ Sbjct: 119 -FEVQGSGGSIAIGGGKVEI---AGNGEVVVNGATVGT--LSKVDFPKPYQLTKIGGGLF 172 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P + +VK+G+LE SN + EM +MI ++ F + + + +A+ Sbjct: 173 VPANPQAAPAPTQASVKQGYLESSNVKVVVEMARMIEASRYFETCAKAVKSYDDMTAKAV 232 Query: 239 RNI 241 + Sbjct: 233 NEL 235 >gi|326792666|ref|YP_004310487.1| flagellar basal-body rod protein FlgF [Clostridium lentocellum DSM 5427] gi|326543430|gb|ADZ85289.1| flagellar basal-body rod protein FlgF [Clostridium lentocellum DSM 5427] Length = 255 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 118/245 (48%), Gaps = 27/245 (11%) Query: 17 QRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQK---------ISFVASGKE 64 +RL ++++++NT T G++ + F EV+ ND + I++ A E Sbjct: 17 KRLEIISNDLANTTTTGYKKDVAVVSSFQEVLMTRLNDTQNQVPNNGPIGNITYGAKIDE 76 Query: 65 -YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y GS ISTG +D A++GD +F +++P G TRDG F + G LV+ G YPV Sbjct: 77 VYTDFTQGSVISTGEMVDVAIQGDGFFVVQTPNGEAYTRDGNFSINQYGDLVTKEG-YPV 135 Query: 124 LDMASVPIQIPQKDEIFNVG------EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 + + PI + +E G +GE++ G+ I T+ L + S+ + +N+ Sbjct: 136 MGLDG-PITL--GEEFLTTGGDVVISSQGEVTLDGQYIDTLELARFEDSRALTKMDNNLY 192 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 S P E + +G+LE +N N + M MI +++ + + +I + + +A Sbjct: 193 SSTAARLPFEG----KLIQGYLESANVNPVTAMVDMITVSRAYETNQKMIQVQDSLLGKA 248 Query: 238 IRNIA 242 + + Sbjct: 249 VNELG 253 >gi|289666048|ref|ZP_06487629.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 251 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 117/264 (44%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVLDEGGTPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + + G T+ G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSLLR 248 >gi|192290682|ref|YP_001991287.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1] gi|192284431|gb|ACF00812.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1] Length = 244 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 12/237 (5%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--NDIDQ--KISFVASG 62 IGL+ +AL+Q++ +A N++N +T GF+ ++F E + K +DI K S VA Sbjct: 7 IGLSRLIALQQQVDNLARNVANQNTTGFKREGIRFLEYLTDAKEADDIPSAPKRSLVAV- 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 Y GS TG D A+ D +F + + RG TR+G F + G LV+ SG Sbjct: 66 TGYTDFSAGSLQLTGNSTDAAVLEDGFFVVRTSRGDRYTRNGAFTLDKQGRLVTLSGDLV 125 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 + A+ I++P D ++G G IS +I + + D + V + P Sbjct: 126 L--AANGTIKVPLTDLNLSIGTDGTISTARSIIGRLRVVKFDDPRSLVAEGTGLFASGSP 183 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI----DENEKSML 235 P L + + + LE SN NS+ EM ++ T+ + + ++ D NE L Sbjct: 184 PIEL-NAGSIRLATNALERSNVNSIREMSDLVAATRAYEQVANVVLKDGDPNELKTL 239 >gi|307945665|ref|ZP_07661001.1| flagellar basal-body rod protein FlgF [Roseibium sp. TrichSKD4] gi|307771538|gb|EFO30763.1| flagellar basal-body rod protein FlgF [Roseibium sp. TrichSKD4] Length = 246 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 14/245 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----NDIDQK 55 M+ + I L+ Q AL +L+ VA+NM+N +T GF+ ++ F E V + N D Sbjct: 1 MENAQLIALSRQSALRNQLNVVANNMANINTGGFKAQRLLFEEYVMPVAEATEFNRRDHD 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSL 114 + +V GS TG ELD A+EGD +F +++ G TR+G F + + G L Sbjct: 61 LFYVQDYGTRTEFMPGSIKLTGNELDIAIEGDGFFVVQTADGGEAYTRNGGFTLDEAGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR-E 173 V+ + K PVL PI D ++ G IS + V + + + D Q V+ + Sbjct: 121 VTPNDK-PVLTEGG-PINFTTADGKIDISRDGTISTELGVRGRIRVVNFDNPQNLVQMGD 178 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N N P + V V +G +E SN + E+ ++I +T+ + +++ +I + ++ Sbjct: 179 NLFQGENAIPN-----AKVRVTQGAIEQSNVEGVVEVTRLIEITRAYTTVSKMIKDADEL 233 Query: 234 MLEAI 238 +AI Sbjct: 234 RQKAI 238 >gi|296330843|ref|ZP_06873318.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674361|ref|YP_003866033.1| flagellar hook protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151848|gb|EFG92722.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412605|gb|ADM37724.1| flagellar hook protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 264 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 34/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S G++ + +L + +N++N +TVGF+ +V F ++V GA Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 51 DIDQKISFVASGKEYLS--KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + K + S + + STG LD A++GD +F +++ GI TR G F + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGIAYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGL 160 + G+LV+ G Y VL+M IQIP + F++G G++S Q G I G+ Sbjct: 121 DNTGTLVTGDG-YHVLNMNGGTIQIPTDAQSFSIGSDGKVSIVDAGGQTQDGGQI---GI 176 Query: 161 YSVDMSQGF------VRRE--NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + S G + RE NSG + + P + +G ++K GFLE SN + E + Sbjct: 177 VTFANSDGLDKVGSNLYRESLNSG-TASAANQPGDGGTG-SLKSGFLEMSNVDLTDEFTE 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + F S + +I +++ + E + Sbjct: 235 MIVAQRGFQSNSKIITTSDEILQELV 260 >gi|188991640|ref|YP_001903650.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. campestris str. B100] gi|167733400|emb|CAP51601.1| Flagellar basal-body rod protein flgF [Xanthomonas campestris pv. campestris] Length = 251 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 117/264 (44%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFQI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 RGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPPTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + + G TV G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSMMR 248 >gi|163782129|ref|ZP_02177128.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] gi|159882661|gb|EDP76166.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] Length = 242 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 31/232 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--------EVVGAIKNDIDQKISFVAS 61 + L E++L+ +N++N DT F+ V+ S +V + + Sbjct: 13 SGMLLQERKLAVTTNNLANLDTPSFKRDFVEVSSWYTDMGAQVPNLSPENPTNNFVYPMM 72 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + + GS TG D A+EG+ +FA+ +P G++ TR G F++ +G LV+ G Y Sbjct: 73 TRIFTDLSQGSLRETGNTFDLAIEGEGFFAVRTPEGVMYTRKGNFRLDSEGFLVTEKG-Y 131 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQGFVRRENS 175 VLD A+ DE+ VG + ++ ++G V ++T+G++++ +Q + Sbjct: 132 RVLDRAN--------DEVKVVGNRVDVDREGNVYVDGIRVSTLGVWALPDAQKVGEDLFT 183 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G P P E G +V++GF+E SN N + EM ++I ++ + LI Sbjct: 184 GT-----PQPAE---GFSVRQGFIELSNVNGIVEMVRLIETSRAHETYARLI 227 >gi|261409668|ref|YP_003245909.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261286131|gb|ACX68102.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 275 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 39/256 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQ--- 54 M S + + AL+QRL +ADNM+N +T G++ + F +V+ ++ D D+ Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFEDVLTQVQGHHKDFDRTGR 60 Query: 55 --KISFVASGKEYLSK-----EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + LS E G+ TG LD ++G A FA++ I TR+G F Sbjct: 61 ATPLGYTLGYGMRLSSVVPNMEQGAMKETGNPLDLMIDGQAMFAVQGDGAIGYTREGGFH 120 Query: 108 VTDDGS------LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVI 155 V+ D LV++ G YPVLD+ PI +P K ++ + E+G+I + Sbjct: 121 VSPDARNPNNLLLVNSQG-YPVLDVNDNPISLPAKGKVA-INERGQIIVETPTGGRTAPY 178 Query: 156 ATMGLYSVDMSQGFVRREN------SGISP-----NIPPTPLEDLSGVTVKRGFLEDSNA 204 AT+ L ++ +G V + +G++ PP P E V GF+E SN Sbjct: 179 ATLKLVELERPEGLVAVGDNLFVLGNGLAEGDVFDTTPPAPGEPPKS-KVLSGFVEQSNV 237 Query: 205 NSMYEMGQMIHLTQKF 220 N E+ +M+ + + + Sbjct: 238 NLTDELTKMMEVQRAY 253 >gi|21231396|ref|NP_637313.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768551|ref|YP_243313.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. campestris str. 8004] gi|21113062|gb|AAM41237.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573883|gb|AAY49293.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 251 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 117/264 (44%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFQI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 RGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + + G TV G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLMRRPDGLMRNTSTDPAQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSLLR 248 >gi|326389273|ref|ZP_08210841.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus JW 200] gi|325994636|gb|EGD53060.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus JW 200] Length = 251 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 14/179 (7%) Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 E G+F T +LDFA++G+ +F + +P G TRDG F ++ DG LV+ G +++ + Sbjct: 80 EEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSFTLSKDGYLVTQEGY--IVEGEN 137 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI-----SPNIPP 183 PIQ+ Q D +V E G I G+++ + + D G +R+E + + S N+ Sbjct: 138 GPIQLSQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDG-LRKEGNNLFFIDNSANVQV 194 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P +K+GFLE SN NS+ EM MI + + + S ++ ++++ +A+ + Sbjct: 195 IPATG----KIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFDETLGKAVNEVG 249 >gi|225849134|ref|YP_002729298.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium azorense Az-Fu1] gi|225644137|gb|ACN99187.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium azorense Az-Fu1] Length = 237 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 30/223 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---ISFVASGKEYLSKEV 70 A+EQ L T+ +N++N +T GF+ K+ E+ I ++ Q + F + Sbjct: 18 AVEQ-LDTITNNIANANTSGFK--KILMREISQKIPENVGQTGDLLVFPRFRDTPVINNQ 74 Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ I T LD A+EG+ +F +E+ G TR+G F + ++G LV +G Y +LD Sbjct: 75 GALIKTDNPLDVAIEGEGFFNVETNVGRFYTRNGHFSINNEGFLVDQNGGY-ILDTNRQR 133 Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 I++ + ++ KGEI Q G+++AT+ + ++ N+ P + Sbjct: 134 IKLDTNGRV-DITTKGEIYQNGRLVATLRVVNLQ---------------NLQPVGNGYYN 177 Query: 191 G-------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 G T+++GFLE SN N + EM +MI+ ++F+ L Sbjct: 178 GQEQATERYTLRQGFLEGSNVNIVKEMVEMINSHRRFDIYMNL 220 >gi|83944163|ref|ZP_00956619.1| Flagellar basal body rod protein [Sulfitobacter sp. EE-36] gi|83845030|gb|EAP82911.1| Flagellar basal body rod protein [Sulfitobacter sp. EE-36] Length = 259 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 112/241 (46%), Gaps = 11/241 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + L+ AL + + T A N++N T G++ I V D I++V YL Sbjct: 23 VALSQATALTRSMDTTAHNLANATTSGYKAIHPVLESVP---DGSGDNAINYVRESGTYL 79 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 G + TG +D A+ GD W + + P G +R GR V DG L +A G P+L Sbjct: 80 ELADGPLMQTGNPMDIAVAGDGWLSFQLPGGETGYSRHGRLVVDVDGQLKTAGG-MPLLG 138 Query: 126 MASVPIQIPQK--DEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 + P+ +P DE+ + +G V+ + + +++ + + +G+ +PP Sbjct: 139 VGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAINEAAQMLPM-GAGMY-QLPP 196 Query: 184 TP--LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + + VK+GF+E SN N++ EM ++I + + + + L+ ++ AI+ + Sbjct: 197 NAGQPQQMENPQVKQGFIEGSNVNAVLEMTRLIDIQRAYENSVKLMGSDDDLTRTAIQKL 256 Query: 242 A 242 Sbjct: 257 G 257 >gi|84624089|ref|YP_451461.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898986|ref|YP_201213.2| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368029|dbj|BAE69187.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 251 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 117/264 (44%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + +G T+ G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFTVATGKTINSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSLLR 248 >gi|58426791|gb|AAW75828.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 280 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 117/264 (44%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 30 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKI 75 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 76 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 135 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 136 LTANGQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 193 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + +G T+ G LE SN ++ + +MI L + Sbjct: 194 VVDAPADRLTRRPDGLMRNTSTDPAQAFTVATGKTINSGMLEGSNVDAAGALVEMIQLQR 253 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 254 QFEMQVKIIKNGDDNAQSANSLLR 277 >gi|238916189|ref|YP_002929706.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] gi|238871549|gb|ACR71259.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] Length = 256 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 110/244 (45%), Gaps = 31/244 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRT-------------IKVKFSEVVGAIKNDIDQ 54 GL Q ++RL V++N++N T G++ IKVK E VG I +I Sbjct: 11 GLTVQ---QKRLDVVSNNLANATTTGYKKEGLTTQSFKDVYGIKVK-DETVGYINQNIGT 66 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRDGRFKVT 109 G+ + S + GSF +TG DFAL G F++ + TRDG F++ Sbjct: 67 LNLGAKVGESFRSWDQGSFQNTGNTFDFALSGSGLFSISFTNKAGETSTLYTRDGSFQMN 126 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ-G 168 +G LV+ G + + + PIQ+P E V E GEI G+ + + L VD Sbjct: 127 REGYLVTKDGDFVLGENG--PIQLPTDFESLTVEESGEIYADGQYVDRLAL--VDFEDYD 182 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITT 225 +V + + + + V +G+LE SN N + EM MI + + F S I Sbjct: 183 YVEAYGENLYKAVDGATQTEAT-AKVNQGYLEASNINVVTEMVDMISIARDFESNQKIMN 241 Query: 226 LIDE 229 IDE Sbjct: 242 TIDE 245 >gi|325927876|ref|ZP_08189100.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas perforans 91-118] gi|325541716|gb|EGD13234.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas perforans 91-118] Length = 243 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 112/248 (45%), Gaps = 41/248 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q STV+ N++N DTVGF+ A+ N +F GK Y S+ Sbjct: 9 QAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKIQGKGYPSRIDALHVDQ 54 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPV 123 G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G + V Sbjct: 55 GFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG-HAV 113 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS----VDMSQGFVRRENSGI 177 LD P+ IP + +G G IS +G+ TM + VD + R G+ Sbjct: 114 LDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMKVVDAPADRLTRRPDGL 172 Query: 178 SPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENE 231 N P + + G TV G LE SN ++ + +MI L ++F +I D+N Sbjct: 173 MRNTSTDPAQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNGDDNA 232 Query: 232 KSMLEAIR 239 +S +R Sbjct: 233 QSANSLLR 240 >gi|332704824|ref|ZP_08424912.1| flagellar basal-body rod protein FlgF [Desulfovibrio africanus str. Walvis Bay] gi|332554973|gb|EGJ52017.1| flagellar basal-body rod protein FlgF [Desulfovibrio africanus str. Walvis Bay] Length = 277 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 40/263 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 MQ + + L+ E R++ +++N++N T G++T V F +V +D +D K Sbjct: 1 MQEAIYSAVFGALSSEHRMNIISNNLANVSTTGYKTDSVTFKDVFVPFAHDYILDSKEHL 60 Query: 59 VAS---------GKEYLSKE-----VGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 A K L++ GS TG LD A++GD +F + +P G+ TR+G Sbjct: 61 RAKPLWPDADVIAKPRLAEHKTDFAQGSLRKTGDPLDLAIQGDGFFKILTPDGVRYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F +G +V ++G P+L PI + + + G +S+ G + T+ L D Sbjct: 121 HFNAMPNGQIVDSNGN-PLLGTDG-PIFL-SGSGVVEIDPAGNVSEGGAQVGTIALVRFD 177 Query: 165 MSQGFVRRENS-------------GISPNIPP-------TPLEDLSGVTVKRGFLEDSNA 204 +G ++ + +SP +P TP +S V +++GFLE SN Sbjct: 178 NPRGVIKDGQNLYKLSEDFEANEMAVSPGMPEITTGSDGTPQTRISPV-IQQGFLESSNV 236 Query: 205 NSMYEMGQMIHLTQKFNSITTLI 227 + EM +MI + + F + ++ Sbjct: 237 EIVTEMVRMIEVNRVFEAYQKIM 259 >gi|33592480|ref|NP_880124.1| flagellar basal body rod protein FlgF [Bordetella pertussis Tohama I] gi|33572126|emb|CAE41668.1| flagellar basal-body rod protein FlgF [Bordetella pertussis Tohama I] gi|332381897|gb|AEE66744.1| flagellar basal body rod protein FlgF [Bordetella pertussis CS] Length = 254 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 23/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLS 67 AA++A Q + + +NM+N +T GFR + V A + ++S VAS G + Sbjct: 12 AARIAEHQ--TVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVSTVASTPGNNF-- 67 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 E+G+ ++TG ELD AL G WFAL++P+G TR G +V +G L +A+G+ PVL Sbjct: 68 -EMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATGQ-PVLSDQ 125 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRENSGISPNI 181 + I++P + + + G ++ G I +G L V+ + + G+ + Sbjct: 126 NAVIEVPDQASL-TIASDGTVTAIGAGDPPNNILNLGRLKMVNPPPQQLVHGDDGVF-RM 183 Query: 182 PP----TPLEDLSGVTVKR---GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 PP P L +R G LE SNA+ M M MI ++F +I E +K+ Sbjct: 184 PPQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGMIQNARRFEMQMQVIREADKN 242 >gi|329928721|ref|ZP_08282570.1| putative flagellar basal-body rod protein FlgB [Paenibacillus sp. HGF5] gi|328937502|gb|EGG33920.1| putative flagellar basal-body rod protein FlgB [Paenibacillus sp. HGF5] Length = 275 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 39/256 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQ--- 54 M S + + AL+QRL +ADNM+N +T G++ + F +V+ ++ D D+ Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFEDVLTQVQGHHKDFDRTGR 60 Query: 55 --KISFVASGKEYLSK-----EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + LS E G+ TG LD ++G A FA++ I TR+G F Sbjct: 61 ATPLGYTLGYGMRLSSVVPNMEQGAMKETGNPLDLMIDGQAMFAVQGDGAIGYTREGGFH 120 Query: 108 VTDDGS------LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVI 155 V+ D LV++ G YPVLD+ PI +P K ++ + E G+I + Sbjct: 121 VSPDARNPNNLLLVNSQG-YPVLDVNDNPISLPAKGKVA-INESGQIIVETPTGGRTAPY 178 Query: 156 ATMGLYSVDMSQGFVRREN------SGISP-----NIPPTPLEDLSGVTVKRGFLEDSNA 204 AT+ L ++ +G V + +G++ PP P E V GF+E SN Sbjct: 179 ATLKLVELERPEGLVAVGDNLFVLGNGLAEGDVFDTTPPAPGEPPKS-KVLSGFVEQSNV 237 Query: 205 NSMYEMGQMIHLTQKF 220 N E+ +M+ + + + Sbjct: 238 NLTDELTKMMEVQRAY 253 >gi|39998143|ref|NP_954094.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] gi|39985089|gb|AAR36444.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] Length = 242 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 9/223 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGAIKNDIDQKIS 57 M + L+ +A +RL +++N++N +T GF+ ++ F + G + Sbjct: 1 MNSGIYSALSGNIAAMKRLDVLSNNLANVNTPGFKKDRMTFESLLQAAGKVPQAGTTDAP 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + + GS TG D A++GD +F + +P G TR G FK+ G LV+A Sbjct: 61 VYSETAFFTDHSRGSVSQTGNTFDLAIDGDGFFVVNTPEGKAYTRQGNFKLDATGKLVTA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G Y V PI I + +GEI G + T+ + + N+ Sbjct: 121 DG-YEV--SGGGPIVI--NGSRVEINARGEILVDGSPVGTLEVVDFPKPYALQKNGNALF 175 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P P + + G V++G+LE SN +++ EM Q+I TQ+F Sbjct: 176 VPTDPQAVPQPVQGEPVRQGYLELSNVSAIQEMVQLIE-TQRF 217 >gi|294664592|ref|ZP_06729933.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605649|gb|EFF48959.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 249 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 115/258 (44%), Gaps = 41/258 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + + G T+ G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKS 233 +F +I D+N +S Sbjct: 225 QFEMQVKIIKNGDDNGQS 242 >gi|319787120|ref|YP_004146595.1| flagellar basal-body rod protein FlgF [Pseudoxanthomonas suwonensis 11-1] gi|317465632|gb|ADV27364.1| flagellar basal-body rod protein FlgF [Pseudoxanthomonas suwonensis 11-1] Length = 249 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 114/262 (43%), Gaps = 39/262 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I + A Q STV+ N++N DT GF+ A+ N +F Sbjct: 1 MDKALYIAMTGARASLQAQSTVSHNLANADTAGFKA----------ALAN----TEAFPV 46 Query: 61 SGKEYLSK------------EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 G Y S+ G+ TG LD +L D W A+++P G TR G Sbjct: 47 RGAGYPSRVAALHVDQGFDASAGALRVTGNPLDVSLHADRWLAVQAPDGSEAYTRAGDLS 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LY 161 +T +G LV+ SG + +L PI +P + +G+ G +S + +A +G L Sbjct: 107 LTPNGQLVT-SGGHALLGQDGNPIALP-PHQALEIGQDGTVSIVPLGEGADTMAMVGRLK 164 Query: 162 SVDMSQGFVRRENSGISPNIPPT-PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 VD + R G+ N P PL+ G + G LE+SN ++ + QMI L ++F Sbjct: 165 VVDARPQQLTRGLDGLMRNTAPQQPLQQAPGTVMTTGALEESNVDAAGALVQMIQLQRQF 224 Query: 221 NSITTLI---DENEKSMLEAIR 239 +I DEN ++ +R Sbjct: 225 EMQVKVIKTGDENARASTSLLR 246 >gi|114570496|ref|YP_757176.1| flagellar basal body rod protein [Maricaulis maris MCS10] gi|114340958|gb|ABI66238.1| flagellar basal body rod protein [Maricaulis maris MCS10] Length = 249 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 13/251 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR--TIKVKFSEVVGAIKNDIDQKISF 58 M + IGL+ Q+ L + + VA+N++N +T GF+ ++ ++ A +D I F Sbjct: 1 MDNAMMIGLSRQMTLRRSMDVVANNIANANTAGFKVESLLLENRAAPTATHDDGPADIQF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + G TG E D A++G +FA+ES TRDGRF++ G LV++ Sbjct: 61 VNTWGMARDFRQGELAFTGREFDLAIDGGGFFAVESNGEEQFTRDGRFRLDGAGQLVASD 120 Query: 119 GKYPVLDMASV-PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G PVLD + PI I + E G I Q + I +G++ + ++ N Sbjct: 121 GA-PVLDADTRGPILIDASAGSVQIVEGGMIMQNDQQIGRIGVFEIANRSEMSKQGNGRY 179 Query: 178 SPNIPPT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + IPP PL + TV +GF+E SN S+ E+ M+ + + + S++ +++ E Sbjct: 180 T--IPPIEDPANEPLA-MIDATVSQGFVEQSNVQSILELTDMMSVMRSYQSVSKFLEQAE 236 Query: 232 KSMLEAIRNIA 242 AI + Sbjct: 237 DLSKRAIERLG 247 >gi|309388845|gb|ADO76725.1| flagellar basal-body rod protein FlgF [Halanaerobium praevalens DSM 2228] Length = 250 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 18/240 (7%) Query: 15 LEQRLSTVADNMSNTDTVGFR---TIKVKFSE-VVGAIKND-IDQKISFVASGKEYLSKE 69 LE++ + ++N++N +T GF+ I F E ++ I+ D DQ+I +A+G YL + Sbjct: 15 LEKKTNIRSNNLANVNTNGFKKSEAITASFPEMLLSKIEADKADQQIGSLATGA-YLERS 73 Query: 70 V-----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 G F T LDFA+EG +F +E+ G +RDG F + D L++ SG VL Sbjct: 74 FKDMSQGDFKRTDNALDFAIEGSGFFVIETENGEKYSRDGNFTINADSELITQSGN-NVL 132 Query: 125 DMASVPIQ-IPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 D IQ IP +D F V +G+I+ G A +GL + + ++ Sbjct: 133 DSNGNRIQIIPDQD--FRVSAEGQITFNNGLQGAQIGLVDFENEAELAQTGDNLYELQGE 190 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P+ +G+ +G++E SN + EM +MI T+ + S +I ++S+ + I + Sbjct: 191 TEPIASQAGIA--QGYVEGSNVQIVEEMAKMIKTTRHYESNQKVISSIDESLNKVINEVG 248 >gi|289577406|ref|YP_003476033.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter italicus Ab9] gi|289527119|gb|ADD01471.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter italicus Ab9] Length = 251 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 128/251 (50%), Gaps = 28/251 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGF-RTIKVKFS----EVVGAIKNDI--DQKISFVA 60 G+ Q+ + + + +N++N +T G+ R I + S EV ++I D KI + Sbjct: 11 GMVTQIKI---MDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNIPPDGKIGKMD 67 Query: 61 SG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 G + + E GS T +LDFA++G+ +F +++P G TRDG F +++DG LV+ Sbjct: 68 YGILIDTFHTNFEEGSLTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLSNDGYLVT 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G ++ + PI++ Q D +V E G I G+++ + + D G +R+E + Sbjct: 128 QEGY--IVQGENGPIELLQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDG-LRKEGNN 182 Query: 177 I-----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + S N+ P +K+GFLE SN NS+ EM MI + + + S ++ + Sbjct: 183 LFFIDNSANVQVIPATG----RIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIAFD 238 Query: 232 KSMLEAIRNIA 242 +++ +A+ + Sbjct: 239 ETLGKAVNEVG 249 >gi|21242726|ref|NP_642308.1| flagellar basal body rod protein FlgF [Xanthomonas axonopodis pv. citri str. 306] gi|21108202|gb|AAM36844.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 251 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q TV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQGTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLSK------------EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S+ G TG LD +L+ D W A++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + + G T+ G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSLLR 248 >gi|39912|emb|CAA39528.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 264 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 28/263 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S G++ + +L + +N++N +TVGF+ +V F ++V GA Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 51 DIDQKISFVASGKEYLS--KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + K + S + + STG LD A++GD +F +++ G TR G F + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI--ATMGLYSV 163 + G+LV+ G Y VL+M I+IP + F++G G++S +GK +G+ + Sbjct: 121 DNTGTLVTGDG-YHVLNMNGGTIKIPTDAQTFSIGSDGKVSIVDAEGKTQDGGQIGIVTF 179 Query: 164 DMSQGF------VRRE--NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 S G + RE NSG + + P + +G +K GFLE SN + E +MI Sbjct: 180 ANSDGLDKIGSNLYRESLNSG-TASAANQPGDGGTGA-LKSGFLEMSNVDLTDEFTEMIV 237 Query: 216 LTQKFNSITTLIDENEKSMLEAI 238 + F S + +I +++ + E + Sbjct: 238 AQRGFQSNSKIITTSDEILQELV 260 >gi|332296517|ref|YP_004438440.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] gi|332179620|gb|AEE15309.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] Length = 251 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 20/224 (8%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--------ISFVASGKE 64 + L +L +V +N++N T GF+ I SE N + + + ++ +G E Sbjct: 13 ITLSDKLDSVTNNLANISTPGFKRIIQNVSESENYPVNRVFLQSDGGRAPFMGYLGNGSE 72 Query: 65 YLSKEV----GSFISTGTELDFA--LEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 ++ V G T ++ D A L +A+F +++P GI TRDG F + ++ LV+ Sbjct: 73 ISTQAVDLSAGGLEHTSSKFDVAITLNNNAFFQVQTPNGIRYTRDGNFTLNNNDELVTQD 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G YPVL A+ PI I ++ + + G I G+ T+G+ S+D V + ++ + Sbjct: 133 G-YPVLSSANAPITIDGQNVV--ISSDGSIQVDGQQTDTLGIVSLDNPSLIVPQGSNLYN 189 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 N + + S V +G+LE SN N++ EM MI L + + S Sbjct: 190 YN---GQVVNASNFKVLQGYLESSNVNTVREMVDMIALERAYES 230 >gi|225850286|ref|YP_002730520.1| flagellar basal-body rod protein FlgF [Persephonella marina EX-H1] gi|225645268|gb|ACO03454.1| flagellar basal-body rod protein FlgF [Persephonella marina EX-H1] Length = 238 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 11/208 (5%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVK-FSEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 A+EQ L T ++N++N +T GF+ + ++ S+ + K + F + G+ Sbjct: 18 AIEQ-LDTTSNNLANVNTPGFKKLLMREMSQTIPENKGNKKHLFVFPRFQDTPVILSQGA 76 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 T LD A+ G +F +E+ +G+ LTR G F + DG +V +G Y +LD I+ Sbjct: 77 LKKTDNPLDIAIFGSGFFTIETGQGVFLTRSGHFLLNSDGYIVDPNGNY-LLDREGKRIK 135 Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + + I V + GEI QKGK +A + + + + + G +P + Sbjct: 136 LEESSGI-TVNQNGEIFQKGKKVARINIVNYENIRHIGHSYYQGEGQEVP-------ADY 187 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++K+GFLE SN N + M ++I+ ++F Sbjct: 188 SLKQGFLEQSNTNGIEAMIELINAQRRF 215 >gi|325918878|ref|ZP_08180955.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas vesicatoria ATCC 35937] gi|325534915|gb|EGD06834.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas vesicatoria ATCC 35937] Length = 251 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 116/266 (43%), Gaps = 45/266 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMG 159 +T +G LV+A+G + VLD P+ IP + +G G IS Q ++ M Sbjct: 107 LTANGQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQAMDIVGKMK 164 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHL 216 + VD + R G+ N P + + G TV G LE SN ++ + +MI L Sbjct: 165 V--VDAPADRLTRRPDGLMRNTSTDPAQAFAVATGKTVNGGMLEGSNVDAAGALVEMIQL 222 Query: 217 TQKFNSITTLI---DENEKSMLEAIR 239 ++F +I D+N +S +R Sbjct: 223 QRQFEMQVKIIKNGDDNAQSANSLLR 248 >gi|33596141|ref|NP_883784.1| flagellar basal body rod protein FlgF [Bordetella parapertussis 12822] gi|33601542|ref|NP_889102.1| flagellar basal body rod protein FlgF [Bordetella bronchiseptica RB50] gi|33573144|emb|CAE36791.1| flagellar basal-body rod protein FlgF [Bordetella parapertussis] gi|33575978|emb|CAE33057.1| flagellar basal-body rod protein FlgF [Bordetella bronchiseptica RB50] Length = 254 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 116/238 (48%), Gaps = 21/238 (8%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLS 67 AA++A Q + + +NM+N +T GFR + V A + ++S VAS G + Sbjct: 12 AARIAEHQ--TVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVSTVASTPGNNF-- 67 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 E+G+ ++TG ELD AL G WFAL++P+G TR G +V +G L +A+G+ PVL Sbjct: 68 -EMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATGQ-PVLSDQ 125 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRENSGI---- 177 + I++P + + + G ++ G I +G L V+ + + G+ Sbjct: 126 NAVIEVPDQASL-TIASDGTVTAIGAGDPPNNILNLGRLKMVNPPPQQLVHGDDGVFRMP 184 Query: 178 -SP-NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P P PL + G LE SNA+ M M MI ++F +I E +K+ Sbjct: 185 QQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGMIQNARRFEMQMQVIREADKN 242 >gi|325921025|ref|ZP_08182907.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas gardneri ATCC 19865] gi|325548507|gb|EGD19479.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas gardneri ATCC 19865] Length = 251 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q TV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQGTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W +++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQQVTGNPLDVSLQQDRWLSVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVLDEGGAPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + +G T+ G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFQIATGKTINSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSMMR 248 >gi|78047585|ref|YP_363760.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036015|emb|CAJ23706.1| flagella basal body rod protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 251 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 116/264 (43%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + + TV G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFAVATSKTVNSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSLLR 248 >gi|332284020|ref|YP_004415931.1| flagellar basal body rod protein FlgF [Pusillimonas sp. T7-7] gi|330427973|gb|AEC19307.1| flagellar basal body rod protein FlgF [Pusillimonas sp. T7-7] Length = 248 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 17/216 (7%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVASGKEYLSKEVGS 72 LEQ+ + +++N++N +T GFR + V VGA + + ++S V S + G Sbjct: 16 LEQQ-AVISNNLANVNTAGFREQMAIYRSVPVVGAAPS-LPTRVSTVTSTPSSHMGQ-GV 72 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 + TG LD A+ GD WF++++P+G TR G F V + LV+ G YPVL PI+ Sbjct: 73 MVETGHALDAAITGDGWFSVQTPQGEAYTRAGEFAVNEQSLLVNLQG-YPVLSADGAPIE 131 Query: 133 IPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 IP++ + G+ G+IS G ++I + L V+ + R G+ Sbjct: 132 IPERGAVTFSGD-GQISALGAGDRPNDIQLIGQLKL--VNPQAADLVRGGDGLFRAANGQ 188 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P + V + GF+E SN N M MI ++F Sbjct: 189 PAQADPEVRMIAGFVEKSNVNPAEAMVGMIANARRF 224 >gi|323697471|ref|ZP_08109383.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323457403|gb|EGB13268.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 258 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 30/248 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M+ S + L+ E R+S++A+N++N +T F+ K+ F + +D +D K Sbjct: 1 MRDSTQSAIFGALSNELRMSSIANNLANVNTSAFKKDKLAFHDTFIRFAHDYLVDAKTYI 60 Query: 59 VAS---------GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 K LS + GS TG +LDFAL G +F+++ ++ TR G Sbjct: 61 RGEDMFPEGHIMAKARLSAQQADLSQGSMERTGNQLDFALSGPGFFSVQGDTAMLYTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F DG L + G YPV+ + P+ IPQ I V ++G I G+ + + D Sbjct: 121 NFVTDGDGMLKTVDG-YPVM-VGGGPLIIPQGGRI-QVDDEGNIQVNGEPAGSFDVVDFD 177 Query: 165 MSQGFVR-RENSGISP----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + R N+ I P IPP V+V +GF+E SN + EM MI + Sbjct: 178 SPELLERVGSNNYIMPTGGAQIPP------QDVSVAQGFIEKSNVEVVTEMVSMIETQRA 231 Query: 220 FNSITTLI 227 F T +I Sbjct: 232 FTMYTKMI 239 >gi|254478136|ref|ZP_05091519.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035998|gb|EEB76689.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] Length = 251 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 17/245 (6%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDI--DQKISFVASG 62 + LA + + +A+N++N +TVG++ V S E + +++ D+K+ + G Sbjct: 10 SGMLAQTKVMDVLANNLANVNTVGYKKDVVVLSSFPNFETIREGGDNVPPDRKVGRIEYG 69 Query: 63 ----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + E G + T +LDFA++G+ +F + +P+G TRDG F + DG LV+ Sbjct: 70 VLIDTFHTVFEEGPLMETTGKLDFAIDGNGFFVVNTPQGERYTRDGAFTMNADGYLVTKD 129 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR-ENSGI 177 G Y VL + PI++ Q D +V E G I G+++ + + D ++ +N Sbjct: 130 G-YLVLG-ENGPIRLSQGD--VSVDENGNIINNGQLVDRLRIVDFDNYDALKKQGDNLFY 185 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 N T + +G +K+GFLE SN NS+ EM MI + + + S ++ ++++ +A Sbjct: 186 LDNAVNTQIIPATG-RIKQGFLEGSNVNSVKEMVNMISVMRNYESNQKVVTAFDETLGKA 244 Query: 238 IRNIA 242 + + Sbjct: 245 VNEVG 249 >gi|83955137|ref|ZP_00963793.1| Flagellar basal body rod protein [Sulfitobacter sp. NAS-14.1] gi|83840466|gb|EAP79639.1| Flagellar basal body rod protein [Sulfitobacter sp. NAS-14.1] Length = 259 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 11/241 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + L+ L + + T A N++N T G++ I + D I++V YL Sbjct: 23 VALSQATVLTRNMDTTAHNLANATTSGYKAIHPVLESIP---DGSGDNAINYVRESGTYL 79 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 G + TG +D A+ GD W + + P G +R GR V DG L +A G P+L Sbjct: 80 ELTDGPLMQTGNPMDIAVAGDGWLSFQLPGGETGYSRHGRLVVDVDGQLKTAGG-MPLLG 138 Query: 126 MASVPIQIPQK--DEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 + P+ +P DE+ + +G V+ + + +++ + + +G+ +PP Sbjct: 139 VGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAINEAAQMLPM-GAGMY-QLPP 196 Query: 184 TP--LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + + VK+GF+E SN N++ EM ++I + + + + L+ ++ AI+ + Sbjct: 197 NAGQPQQMENPQVKQGFIEGSNVNAVLEMTRLIDIQRAYENSVKLMGSDDDLTRTAIQKL 256 Query: 242 A 242 Sbjct: 257 G 257 >gi|20806698|ref|NP_621869.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|20515152|gb|AAM23473.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] Length = 251 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 17/245 (6%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDI--DQKISFVASG 62 + LA + + +A+N++N +TVG++ V S E + +++ D+K+ + G Sbjct: 10 SGMLAQTKVMDVLANNLANANTVGYKKDIVVLSSFPNLETIREGGDNVPPDRKVGRIEYG 69 Query: 63 ----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + E G + T +LDFA++G+ +F + +P+G TRDG F + DG LV+ Sbjct: 70 VLIDTFHTVFEEGPLMETTGKLDFAIDGNGFFVVNTPQGERYTRDGAFTMNADGYLVTKD 129 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR-ENSGI 177 G Y VL + PI++ Q D +V E G I G+++ + + D ++ +N Sbjct: 130 G-YIVLG-ENGPIRLSQGD--VSVDENGNIINNGQLVDRLRIVDFDNYDALRKQGDNLFY 185 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 N T + +G +K+GFLE SN NS+ EM MI + + + S ++ ++++ +A Sbjct: 186 LDNAVNTQIIPATG-RIKQGFLEGSNVNSVKEMVNMISVMRNYESNQKVVTAFDETLGKA 244 Query: 238 IRNIA 242 + + Sbjct: 245 VNEVG 249 >gi|291484181|dbj|BAI85256.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. natto BEST195] Length = 264 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 28/263 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S G++ + +L + +N++N +TVGF+ +V F ++V GA Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 51 DIDQKISFVASGKEYLS--KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + K + S + + STG LD A++GD +F +++ G TR G F + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI--ATMGLYSV 163 + G+LV+ G Y VL+M I+IP + F++G G++S +GK +G+ + Sbjct: 121 DNTGTLVTGDG-YHVLNMNGGTIKIPTDAQSFSIGSDGKVSIVDAEGKTQDGGQIGIVTF 179 Query: 164 DMSQGF------VRRE--NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 S G + RE NSG + + P + +G +K GFLE SN + E +MI Sbjct: 180 ANSDGLDKIGRNLYRESLNSG-TASAANQPGDGGTGA-LKSGFLEMSNVDLTDEFTEMIV 237 Query: 216 LTQKFNSITTLIDENEKSMLEAI 238 + F S + +I +++ + E + Sbjct: 238 AQRGFQSNSKIITTSDEILQELV 260 >gi|298507080|gb|ADI85803.1| flagellar basal body rod protein FlgF [Geobacter sulfurreducens KN400] Length = 242 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 9/223 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGAIKNDIDQKIS 57 M + L+ +A +RL +++N++N +T GF+ ++ F + G + Sbjct: 1 MNSGIYSALSGNIAAMKRLDVLSNNLANVNTPGFKKDRMTFESLLQAAGKVPQAGTTDAP 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + + GS TG D A++GD +F + +P G TR G FK+ G LV+A Sbjct: 61 VYSETAFFTDHSRGSVSQTGNTFDLAIDGDGFFVVNTPEGKAYTRQGNFKLDATGKLVTA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G Y V PI I + +GEI G + T+ + + N+ Sbjct: 121 DG-YEV--SGGGPIVI--NGSRVEINARGEILVDGSPVGTLEVVDFPKPYALQKNGNALF 175 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P P + + G V++G LE SN +++ EM Q+I TQ+F Sbjct: 176 VPTDPQAVPQPVQGEPVRQGHLEYSNVSAIQEMVQLIE-TQRF 217 >gi|220932495|ref|YP_002509403.1| flagellar basal body rod protein [Halothermothrix orenii H 168] gi|219993805|gb|ACL70408.1| flagellar basal body rod protein [Halothermothrix orenii H 168] Length = 248 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 118/236 (50%), Gaps = 15/236 (6%) Query: 16 EQRLSTVADNMSNTDTVGFRT---IKVKFSEV-VGAIKNDIDQKISFVASG----KEYLS 67 ++++ VA+N++N +T G++ I+V F EV + ++ + + +G ++Y Sbjct: 16 QRKMKLVANNLANVNTAGYKRDEGIQVSFPEVFISRLEKGQATPLGELGTGVKIEEDYTD 75 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A++G+ +F +E+PRG TR+G F V + G +V+ G YPVL Sbjct: 76 FREGQMNHTGNPLDVAIDGNGFFVVETPRGRRYTRNGNFTVNEQGQIVTQQG-YPVLGER 134 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPL 186 P+Q + I ++ G++ + + + QG + EN ++ I Sbjct: 135 G-PLQTIRGRNI-SINTDGQLYLDNLEGDRLLIVDFENRQGLRKIGENLYVNEGIREIQA 192 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 D +K+G+LE SN N + EM +MI + + F +I ++++ +A+ N+ Sbjct: 193 SDYQ---IKQGYLETSNVNIVKEMVRMIEVNRAFEVNQKVIKNADQTLSKAVNNVG 245 >gi|167645397|ref|YP_001683060.1| flagellar basal body rod protein [Caulobacter sp. K31] gi|167347827|gb|ABZ70562.1| flagellar basal body rod protein [Caulobacter sp. K31] Length = 245 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 14/236 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDID 53 M + +GL+ Q+ L + L VA+N++N +T GF RT K + VG Sbjct: 1 MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEQLMVRTEPAKPARTVGG-----S 55 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + FV G+ TG D A+EG +F + + G TRDGRF ++ +G Sbjct: 56 YPVKFVLDDGVARDFSQGALTQTGGAFDLAIEGQGFFKVSTAGGERYTRDGRFTMSPEGK 115 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 L++ +G VLD I + + G +SQ + + +G+ F R++ Sbjct: 116 LITQNGA-SVLDEGGGEIIVDPLKGPATIARDGTVSQGAERLGKIGVVRPTDLAAF-RKD 173 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N + + + +G LE SN S+ ++ ++I + + + S+ ++D+ Sbjct: 174 GDNLYRNTTNDTPQPATNAAIHQGMLEASNVESIKQITKLIEVNRAYESVAKMMDQ 229 >gi|221309506|ref|ZP_03591353.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. 168] gi|221313830|ref|ZP_03595635.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318753|ref|ZP_03600047.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. JH642] gi|221323025|ref|ZP_03604319.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. SMY] gi|255767369|ref|NP_389511.2| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. 168] gi|321315395|ref|YP_004207682.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] gi|239938626|sp|P23446|FLGG_BACSU RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|142919|gb|AAA22444.1| flgG [Bacillus subtilis] gi|225184996|emb|CAB13502.2| flagellar hook protein [Bacillus subtilis subsp. subtilis str. 168] gi|320021669|gb|ADV96655.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] Length = 264 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 28/263 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S G++ + +L + +N++N +TVGF+ +V F ++V GA Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 51 DIDQKISFVASGKEYLS--KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + K + S + + STG LD A++GD +F +++ G TR G F + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI--ATMGLYSV 163 + G+LV+ G Y VL+M I+IP + F++G G++S +GK +G+ + Sbjct: 121 DNTGTLVTGDG-YHVLNMNGGTIKIPTDAQSFSIGSDGKVSIVDAEGKTQDGGQIGIVTF 179 Query: 164 DMSQGF------VRRE--NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 S G + RE NSG + + P + +G +K GFLE SN + E +MI Sbjct: 180 ANSDGLDKIGSNLYRESLNSG-TASAANQPGDGGTGA-LKSGFLEMSNVDLTDEFTEMIV 237 Query: 216 LTQKFNSITTLIDENEKSMLEAI 238 + F S + +I +++ + E + Sbjct: 238 AQRGFQSNSKIITTSDEILQELV 260 >gi|294625275|ref|ZP_06703914.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600449|gb|EFF44547.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 251 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T +G LV+A+G + V D P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANGQLVTANG-HAVQDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + + G T+ G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSLLR 248 >gi|323490149|ref|ZP_08095369.1| fagellar hook-basal body protein [Planococcus donghaensis MPA1U2] gi|323396197|gb|EGA89023.1| fagellar hook-basal body protein [Planococcus donghaensis MPA1U2] Length = 255 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 120/250 (48%), Gaps = 20/250 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ + +L + +N++N +T+G++ + F +++ ++ V G + Sbjct: 8 GVSGMKNFQTKLDVIGNNIANVNTIGYKKSTINFQDLLSQNMSNSGTNPMQVGLGTTTSA 67 Query: 68 KEV----GSFISTGTELDFALEGDAWFALESPR-----GIILTRDGRFKVTDDGSLVSAS 118 V GS +STG E D A+ G+ +F ++ P G LTR G F VT G+LVSA Sbjct: 68 INVNHNPGSVMSTGIETDLAIMGNGFFVVQDPEAPGADGQFLTRSGSFSVTTAGNLVSAQ 127 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRRE 173 G Y VL+ A PI + D F++ GE+ + IA +G+ + + +G + Sbjct: 128 G-YNVLNSAGAPINVAGYDS-FSINRSGEVVGRQADGTETTIAFVGISNPENPEGLKKVG 185 Query: 174 NS--GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S + PN PT L+ + G LE SN + E +MI + F + + I ++ Sbjct: 186 GSMYEVPPNT-PTQTAALANTEIGSGMLEMSNVDLTEEFTEMIIAQRGFQANSRTITTSD 244 Query: 232 KSMLEAIRNI 241 + +L+ + N+ Sbjct: 245 E-ILQEVMNL 253 >gi|166712061|ref|ZP_02243268.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzicola BLS256] Length = 251 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 41/264 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ A+ N +F Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKI 46 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 GK Y S + G TG LD +L+ D W A++SP G TR+G Sbjct: 47 QGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELA 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS--- 162 +T + LV+A+G + VLD P+ IP + +G G IS +G+ TM + Sbjct: 107 LTANSQLVTANG-HAVLDEGGNPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMK 164 Query: 163 -VDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 VD + R G+ N P + + G T+ G LE SN ++ + +MI L + Sbjct: 165 VVDAPADRLTRRPDGLMRNTSTDPAQAFAVSTGKTINSGMLEGSNVDAAGALVEMIQLQR 224 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 +F +I D+N +S +R Sbjct: 225 QFEMQVKIIKNGDDNAQSANSLLR 248 >gi|237755436|ref|ZP_04584061.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium yellowstonense SS-5] gi|237692400|gb|EEP61383.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium yellowstonense SS-5] Length = 236 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 12/211 (5%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVK-FSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 ++L T +N++N++T GF+ + ++ S+ + K + + F + G I Sbjct: 20 EQLDTTTNNIANSNTPGFKKLLLREMSQKIPENKGKVGDLLVFPRFMDSPVLNFQGPLIK 79 Query: 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 T LD A+ GD +F +ES G TR+G F + +G LV +G Y VLD IQI Sbjct: 80 TENNLDLAIVGDGFFTVESAIGRYYTRNGHFSINQEGYLVDVNGAY-VLDENFRRIQI-- 136 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK 195 +D F + KGEI Q G++ + + ++ Q G + + +K Sbjct: 137 QDSKFQITPKGEIYQNGQITGRIRVVNLQNLQAVGSSYYQGQE--------QQTTNFEIK 188 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G+LE +N N + EM +MI+ ++F+ L Sbjct: 189 QGYLEGANLNVVKEMVEMINNHRRFDIYMNL 219 >gi|332800001|ref|YP_004461500.1| flagellar basal-body rod protein FlgF [Tepidanaerobacter sp. Re1] gi|332697736|gb|AEE92193.1| flagellar basal-body rod protein FlgF [Tepidanaerobacter sp. Re1] Length = 255 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 122/254 (48%), Gaps = 25/254 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------------SEVVGAIKNDIDQK 55 G + L+ R +++N++N +T GF+ + F + + ID + Sbjct: 8 GASGMLSEMSRTDVISNNLANVNTSGFKKDRAIFRALPEMNIHRFDDPITVGLDRVIDPR 67 Query: 56 ISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 G + E+ G+ T LD AL G+ +F +++P GI TRDG F + Sbjct: 68 PFIGMLGTGVMLDEINTDFSQGAIKVTSNPLDIALRGEGFFEVQTPEGIRYTRDGSFTID 127 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG +V+ G Y + + P+ +PQ+ ++ + ++GE++ G+ + + + + QG Sbjct: 128 RDGYIVTKDGYYVLGENG--PMLLPQEGDVV-ISQQGEVTVSGQFVDRLEIVNF-ADQGQ 183 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 V ++ S + + PT D V +G LE SN N++ EM +I + + + +I Sbjct: 184 VVKQGSNLYNSQAPTVPTD---AEVIQGALEGSNTNTISEMVDLITAFRAYEASQKVIQT 240 Query: 230 NEKSMLEAIRNIAS 243 +++++ A+ +IAS Sbjct: 241 HDETLDRAVNDIAS 254 >gi|188997558|ref|YP_001931809.1| flagellar basal body rod protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932625|gb|ACD67255.1| flagellar basal body rod protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 236 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 12/211 (5%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVK-FSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 ++L T +N++N++T GF+ + V+ S+ + K + + F + G I Sbjct: 20 EQLDTTTNNIANSNTPGFKKLLVREMSQKIPENKGKVGDLLVFPRFMDSSVLNFQGPLIK 79 Query: 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 T LD A+ D +F +ES G TR+G F + +G LV +G Y VLD IQI Sbjct: 80 TENNLDLAIVRDGFFTVESAIGRYYTRNGHFSINQEGYLVDVNGAY-VLDENFRRIQI-- 136 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK 195 +D F + KGEI Q G++ + + ++ Q G + ++ +K Sbjct: 137 QDSKFQITPKGEIYQNGQITGKIRVVNLQNLQAVGNSYYQGQE--------QQITNFEIK 188 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G+LE +N N + EM +MI+ ++F+ L Sbjct: 189 QGYLEGANLNIVKEMVEMINNHRRFDIYMNL 219 >gi|42522133|ref|NP_967513.1| flagellar biosynthesisprotein [Bdellovibrio bacteriovorus HD100] gi|39574664|emb|CAE78506.1| Flagellar biosynthesisprotein [Bdellovibrio bacteriovorus HD100] Length = 271 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 31/247 (12%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---------IKNDIDQKISFV 59 L+ +A +L T+A+N++N +T F+ + F E + A I D+ SF Sbjct: 10 LSGAMAQSTKLDTIANNLANVNTPAFKRDQQLFQEYLTANEKMPETTQIPRDVAAIESFY 69 Query: 60 ---ASGKEYLSKE-------VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 K Y+ + G TG LD A++G +F + +P G+ LTR G F + Sbjct: 70 NMQGGDKSYVDTKGTFTDFSQGGLKPTGNSLDVAIDGKGFFEIATPGGVKLTRSGNFTLD 129 Query: 110 DDGSLVSASGKYPVL-------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G LV+ G YPVL D A I+ + + + G++ + + + + L + Sbjct: 130 GSGQLVTKEG-YPVLRQGEAGSDPAGRVIRFTGNGAVA-IADNGDVYEGTENLGKLSLVN 187 Query: 163 VDMSQGFVRRENS--GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V+ + +S PNI P +++++ ++K+GFLE SN N + EM MI + F Sbjct: 188 VNNPDSLQKTGSSLYTFKPNIAPD-MQNIANPSLKQGFLETSNVNIVQEMTDMISTNRVF 246 Query: 221 NSITTLI 227 S I Sbjct: 247 ESTQKAI 253 >gi|327398889|ref|YP_004339758.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] gi|327181518|gb|AEA33699.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] Length = 264 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 25/248 (10%) Query: 17 QRLSTVADNMSNTDTVGFRT--IKVK-FSEVVG------AIKNDIDQKISFVASGKE--- 64 QR++ + +N++N +T GF+ I VK +S + G I D +F+ K Sbjct: 17 QRVNNITNNIANLNTPGFKKEGINVKSWSRIWGMANANLPIPPDTQAAANFINETKNSTP 76 Query: 65 -----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 Y+ G TG +LDFALEG +F + +P+GI TR+G+F++ DG L+ Sbjct: 77 HLDTNYIDFSQGPLRHTGNKLDFALEGKGFFLVLAPKGIQYTRNGQFEINKDGILIQRGT 136 Query: 120 KYPVLD----MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 YPV+ + I+I K + + GE+ G I + + + NS Sbjct: 137 GYPVVGENYLINHKLIKITGKTIL--IKNDGEVYSDGVRIDKLAIRDFANYTNLKKEPNS 194 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 SP +P+ +K G+LE SN + EM ++I + F +ID +L Sbjct: 195 MFSPINGESPIP-APNTFLKEGYLEMSNVTIVNEMVKLIESQRNFERYQRVIDSLGNELL 253 Query: 236 EAI-RNIA 242 I RN++ Sbjct: 254 SDIARNLS 261 >gi|222053731|ref|YP_002536093.1| flagellar basal-body rod protein FlgF [Geobacter sp. FRC-32] gi|221563020|gb|ACM18992.1| flagellar basal-body rod protein FlgF [Geobacter sp. FRC-32] Length = 244 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 22/238 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ LA +RL +++N++N +T GF+ +++F V+ + K+ S Sbjct: 1 MNSGLYAALSGNLAAMRRLDVISNNLANANTAGFKGDRLQFESVLASSKSQSQAAAS--P 58 Query: 61 SGKEYLSKEV-------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + S E+ G TG LD AL+GD +F + +P+G TR G F++ G Sbjct: 59 NDSPVFSSEIFFTDYSPGPLKQTGNTLDVALDGDGFFVVNTPQGRAYTRQGNFRMDSAGR 118 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF-VRR 172 LV++ G Y V + + + D + KG I G T+ + VD + + +++ Sbjct: 119 LVTSEG-YEVQGGGPITVNGGRVD----IDAKGAILVDGTPAGTLDI--VDFQKPYALQK 171 Query: 173 ENSGISPNIPPTPLE---DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G+ IP P E +++ TV++G LE SN N + EM +MI T+ F S ++ Sbjct: 172 LGEGLF--IPANPQETPVNVTTTTVQQGALEGSNVNVVAEMVRMIETTRYFESCQKVV 227 >gi|297618421|ref|YP_003703580.1| flagellar basal-body rod protein FlgF [Syntrophothermus lipocalidus DSM 12680] gi|297146258|gb|ADI03015.1| flagellar basal-body rod protein FlgF [Syntrophothermus lipocalidus DSM 12680] Length = 256 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 132/255 (51%), Gaps = 29/255 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEV----VGAIK--NDIDQKISF 58 G+ QLA + +A+N++N T GF+ + F ++ +G +K ++ I Sbjct: 11 GMLLQLA---KQDVIANNLANASTPGFKKDLAVCTAFPDMMINRLGEVKVVAGKEEPIPP 67 Query: 59 VASGK-------EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 VA G+ + +S + G+ T LD A+ GD +F +++P+G TR+G F++ Sbjct: 68 VAIGRLGTGAAIQTISTDFSAGAVQKTDNPLDLAIAGDGFFVIQTPQGEKYTRNGSFRIG 127 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DDG L +A G YPVL + PI I D+ F + EKG + +V+ T+ + + + Sbjct: 128 DDGILTTAQG-YPVLGRSG-PINI--GDQTFTIDEKGNLLVGDEVLDTLRVVRFENNSEL 183 Query: 170 VRR-ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 V+ ++ +P+ P +ED V +G+LE SN ++ EM ++I + + + + ++ Sbjct: 184 VKTGDDLFTNPSGTPVDVEDGQ---VIQGYLELSNVVAVKEMVELISVLRAYEANQKVVQ 240 Query: 229 ENEKSMLEAIRNIAS 243 +++++ AI + + Sbjct: 241 AHDQTLDAAINRVGA 255 >gi|220903670|ref|YP_002478982.1| hypothetical protein Ddes_0391 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867969|gb|ACL48304.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 265 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 21/247 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-VVGAIKNDIDQKISFV 59 MQ GL A L E R++ +A+N++N +T G++ V F + +V ++I + + + Sbjct: 1 MQAGMFSGLFAALTTEHRMNFIANNLANANTRGYKRDTVAFKDTMVTYAFDEIREPLMNL 60 Query: 60 ASGKEY------------LSK---EVGSFISTGTELDFALEGD-AWFALESPRGIILTRD 103 S + +SK GS +G LD A+ G+ A+F + +P G LTR+ Sbjct: 61 KSKPLFPEPLNASRVRLAVSKIDFAQGSMQYSGNPLDMAINGENAFFRVATPTGDFLTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F ++++G++++ G YP+ I IPQ V G++ V+ + L SV Sbjct: 121 GAFVLSENGTIMTPQG-YPLQAQGGGNIVIPQGTRHIQVSGDGQVIADNDVLGQIALVSV 179 Query: 164 DMSQGFVRRENSGISPNIPPTPLED---LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D Q + N+ P E L G +++GF E +N + EM MI + ++F Sbjct: 180 DNPQNLEKMGNNLYRPRENVQVAEGNAYLEGGRIEQGFTEAANVEVVPEMVNMIEVQRQF 239 Query: 221 NSITTLI 227 + ++ Sbjct: 240 EAYQKVM 246 >gi|289577407|ref|YP_003476034.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter italicus Ab9] gi|289527120|gb|ADD01472.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter italicus Ab9] Length = 266 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 31/239 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G+ AQ + + +A+N++N +T F+ + +F +++ G ++ ++ Sbjct: 11 GMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENIYGGQGRPVNMQVG 67 Query: 58 FVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS- 113 V + K+ GS T LD AL+G+ +FA+ P G + TRDG FK++ DG+ Sbjct: 68 -VGVRPSAIVKDFTEGSLQQTDNPLDLALDGEGFFAVLGPDGTVYYTRDGSFKLSADGNT 126 Query: 114 --LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMS 166 LV+A G YPVLD PI + ++ +V G IS K + +AT+G+Y+ Sbjct: 127 LMLVTADG-YPVLDDRGNPIVFDRTEKDISVSPLGVISVKNANGTTREVATLGIYNFVNP 185 Query: 167 QGFVRRENSGISPNIP---PTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 QG + N+ P P +D G V +GFLE SN + EM MI + + Sbjct: 186 QGLLSVGNNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVDMIAAQRAY 244 >gi|209886824|ref|YP_002290681.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5] gi|209875020|gb|ACI94816.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5] Length = 243 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--FVASGKE 64 IGLAA +AL + + +VA+N++N T F+ +V+F E + + ++ + S Sbjct: 7 IGLAALIALRRHVDSVANNVANLTTPAFKAGRVQFKEYLTEAEEADSPAMAKRSLVSTSH 66 Query: 65 YLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + VG +TG LD AL + DA+F +++P G TR G F + DG L + GK + Sbjct: 67 FTDFSVGGMRTTGNPLDVALTDDDAFFVVDTPGGPRYTRSGAFTLNADGKLATIDGKPVL 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS-VDMSQGFVRRENSGISPNIP 182 + + +Q +D + G IS + IA + L D + V+ E G+ + Sbjct: 127 TSIGHLVVQ--PRDGPVTIAGDGSISTRQGRIAGLRLVRFADRRE--VKPEGGGLF-SAA 181 Query: 183 PTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 +PLE SG + G LE SN EM ++I + + ++T ++ ++E Sbjct: 182 HSPLEVPSGAGRLAIGVLETSNVREADEMSRLIAASNAYETLTKVVFKSE 231 >gi|297570292|ref|YP_003691636.1| flagellar basal-body rod protein FlgF [Desulfurivibrio alkaliphilus AHT2] gi|296926207|gb|ADH87017.1| flagellar basal-body rod protein FlgF [Desulfurivibrio alkaliphilus AHT2] Length = 244 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 18/233 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ LA E+RL VA+N++N DT G++ V F E++ N Q++ + + + Sbjct: 12 GVETMLAQERRLDQVANNLANVDTAGYKKDAVSFWEMLYQ-ANAERQRVG--KALRVHTD 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 + G TG LD A++G+ +F +++ +GI TR G F++ G L + G + D Sbjct: 69 HQQGHVDPTGNPLDLAIQGEGFFRIQTDQGIRYTRAGSFQLDPMGQLRTPEGGLVLGDGG 128 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR--RENSGISPNIPPTP 185 PI + + F V G + G + + + V+ ++ R ++ P Sbjct: 129 --PIVVDGNN--FAVERDGRVMVDGVQVNQLEVVGVNDLTNLIKEGRNLFRLAAEGEEMP 184 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 LE ++ V++GFLE SN NS+ EM MI L + + E ++ M++AI Sbjct: 185 LEAMN-FQVRQGFLEKSNVNSVEEMTTMIDLQRSY--------EAQQKMIQAI 228 >gi|311068150|ref|YP_003973073.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] gi|310868667|gb|ADP32142.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] Length = 264 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 42/270 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++V Q I+ + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMV-------SQTIAGGS 53 Query: 61 SGKEYL----SKEVGSFISTGT---------------ELDFALEGDAWFALESPRGIILT 101 + + SK++G STGT LD A++GD +F +++ G + T Sbjct: 54 AAGAQVGGTNSKQIGLGSSTGTIDTIHSTSATQSTGRTLDLAIDGDGYFQIDNGEGTVYT 113 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI--A 156 R G F + ++G LV+ G Y V + I IP+ + F +G G +S G+ I Sbjct: 114 RAGNFYLDNEGKLVTGDGYY-VQKLGGGEITIPKDAQNFTIGPDGSVSIVGAGGEKIDGG 172 Query: 157 TMGLYSVDMSQGF------VRRE--NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 +G+ + S G + RE NSG +P+ P + +G +K GFLE SN + Sbjct: 173 QIGIVTFANSDGLDKIGNSLYRESSNSG-TPSAANIPGDGGTG-ELKSGFLEMSNVDLTD 230 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E +MI + F S + +I +++ + E + Sbjct: 231 EFTEMIVAQRGFQSNSKIITTSDEILQELV 260 >gi|320107041|ref|YP_004182631.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] gi|319925562|gb|ADV82637.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] Length = 249 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 30/224 (13%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKI-----SFVASGKEYL 66 LA Q L T A+N+SNT+TVGFR + F V+ G D++ ++ SF G L Sbjct: 13 LARTQALDTAANNLSNTNTVGFRAQRDYFRGVLAGMPPGDLESQVGDAVNSFGILGGNTL 72 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G +TG LD AL+G +FA+++ G TRDG F DG+L + G VLD Sbjct: 73 DLSQGEITATGNPLDLALDGSGFFAVQTTHGTRYTRDGGFLRAADGTLETRRGD-GVLDA 131 Query: 127 ASVPIQIPQKDEIFNVGEKGEIS---QKGKVIA-TMGL-------YSVDMSQGFVRRENS 175 I +P + VG G IS +G IA +G+ S + + FV RE + Sbjct: 132 TGKKIIVPSGE--VQVGGDGTISVLTAEGSAIAGKLGILNFKGSDLSAEGANLFVAREGA 189 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 TP+ S V+ G LE +N ++++ Q++ + ++ Sbjct: 190 --------TPIA--SEARVQEGSLEGANQDAVHGTMQLLLMQRQ 223 >gi|304321132|ref|YP_003854775.1| flagellar basal-body rod protein FlgF [Parvularcula bermudensis HTCC2503] gi|303300034|gb|ADM09633.1| flagellar basal-body rod protein FlgF [Parvularcula bermudensis HTCC2503] Length = 238 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 30/237 (12%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---FVASGKEY 65 ++ Q L + + +A+N++N T GF++ FSE V ++ + +S FV +Y Sbjct: 9 VSRQGGLLKAVQMIANNIANASTPGFKSEGAIFSEYVSEGRS-LATSLSMGRFVGQSTDY 67 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 S G TG DFA++G+ +F + +P G LTR G + +G +V +G P+LD Sbjct: 68 AS---GPLKQTGGTYDFAIQGEGFFKVSTPAGERLTRAGSYTTDLEGVIVDPAGN-PLLD 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP 185 I IP VG+ G +S G++ A +G+Y+ E + N+ P Sbjct: 124 EGGGEITIPPDAVSVGVGQDGTLSVDGEIFAKIGVYT-------PLGEPERVGDNLWRVP 176 Query: 186 LED--LSGVTVKRGFLEDSN------------ANSMYEMGQMIHLTQKFNSITTLID 228 D V +GF+E SN A MYE GQ + Q+ ++TLID Sbjct: 177 DGDAVFEEGRVLQGFIEGSNVQPVAEFAKLMLAQRMYEAGQKMA-DQEHERLSTLID 232 >gi|299066527|emb|CBJ37717.1| Putative flagellar component of cell-proximal portion of basal-body rod (flgF) [Ralstonia solanacearum CMR15] Length = 254 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 13/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR--TIKVK-FSEVVGAIKNDIDQKIS 57 MQ F + L++ RL VA N++N T G++ + V+ FS VV A+ + Sbjct: 1 MQEIFAVTLSSMHQDMARLDGVALNLANVSTPGYKRGVVAVQPFSSVVDAVAGQAGARAE 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + + G+ TG +D AL GD +F + +P G TR G F+ G LV+A Sbjct: 61 DMNGVQVMSDMRPGTVKLTGEPMDVALAGDGFFEVTTPSGPAYTRQGNFRTDAMGRLVTA 120 Query: 118 SGKYPVLDMAS---VPIQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSVDMSQGF 169 G YPV+ + Q P D NV E + + IA + + D + Sbjct: 121 QG-YPVMGKNGEIFLTTQTPVVDAAGNVTEPNATTGPSAISPRTPIAQIKVVKFDTPK-T 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++R G+ + + D + V +++G LE+ N +SM EM Q+I + F S+ + Sbjct: 179 LQRLGEGLMASGTGMTVVDDANVQIRQGALENGNVSSMQEMMQLIQTMRHFESVQKVTQG 238 Query: 230 NEKSMLEAIRNI 241 ++ + AIR + Sbjct: 239 YDEMIGTAIRKL 250 >gi|297543694|ref|YP_003675996.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841469|gb|ADH59985.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 266 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 31/239 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G+ AQ + + +A+N++N +T F+ + +F +++ G ++ ++ Sbjct: 11 GMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENIYGGQGRPVNMQVG 67 Query: 58 FVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS- 113 V + K+ GS T LD AL+G+ +FA+ P G + TRDG FK++ DG+ Sbjct: 68 -VGVRPSAIVKDFTEGSLQQTDNPLDLALDGEGFFAVLGPDGTVYYTRDGSFKLSADGNT 126 Query: 114 --LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMS 166 LV+A G YPVLD + PI + +V G IS K + +AT+G+Y+ Sbjct: 127 LMLVTADG-YPVLDDSGNPIVFDSTGKDISVSPMGVISVKNPDGTTQEVATLGIYNFVNP 185 Query: 167 QGFVRRENSGISPNIP---PTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 QG + N+ P P +D G V +GFLE SN + EM MI + + Sbjct: 186 QGLLSVGNNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVDMIAAQRAY 244 >gi|260886210|ref|ZP_05897473.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|330839794|ref|YP_004414374.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] gi|260863929|gb|EEX78429.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|329747558|gb|AEC00915.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] Length = 264 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 4/145 (2%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 GS +TG LD A+ G+ +FA+++P+G+ TRDG F +G+LV+A G+ VL+ + P Sbjct: 94 GSMKTTGNMLDLAVSGEGYFAIQTPQGVRYTRDGSFYRQANGALVTARGQ-AVLNAQNRP 152 Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 I +P I +G KGEI + I T+ D + +++ ++ P P + + Sbjct: 153 IMLPDSANI-TIGAKGEIMDGQRRIDTLQFVQFDDRRAVLKQGDNLYRPQQGAEP-QAAT 210 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIH 215 G +++G LE+SN N EM +I+ Sbjct: 211 G-DIQQGMLENSNVNIASEMVSLIN 234 >gi|298529927|ref|ZP_07017329.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509301|gb|EFI33205.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] Length = 261 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/264 (22%), Positives = 121/264 (45%), Gaps = 26/264 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-------ID 53 MQ ++ E +++T+ +N++N +T G++ K+ F +V +D ++ Sbjct: 1 MQDEMYSAFFGAMSQEAKMNTITNNLANVNTTGYKRDKIAFEDVFTRYASDYGDPNMTLE 60 Query: 54 QKISFVAS--------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDG 104 ++ + S +L + G TG LD A+ G+ +F + +P G TR+G Sbjct: 61 DRLPWPESKLRSQTRPSPVHLDLQDGDMRKTGNPLDLAISGEGFFEVTTPEGETAYTRNG 120 Query: 105 RF-KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 F + + G LV+ G+ L PI+IP+ +GE GE+ G ++ + L + Sbjct: 121 SFLRNPETGHLVT--GQNFELQGEGGPIEIPEDASNIAIGENGEVLADGDLLDVINLTTF 178 Query: 164 DMSQGFVRRENSGIS----PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 ++ + + P P ED +++G+LE+SN + +YEM MI + Sbjct: 179 TDLNALEKKGRQLVQVKDGADSAPIPAED---ARIEQGYLENSNVDPVYEMVNMISTMRN 235 Query: 220 FNSITTLIDENEKSMLEAIRNIAS 243 F ++ ++ + + + I+ + + Sbjct: 236 FEALQKMMTSSHEKDQQLIQQVGT 259 >gi|303328382|ref|ZP_07358820.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] gi|302861712|gb|EFL84648.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] Length = 264 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 22/247 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFV 59 MQ + GL L E R++ +A+N++N +T G++ + F + + + +D I + + + Sbjct: 1 MQDALFSGLFGALTTEHRMNFIANNLANVNTHGYKRDTLAFKDTMASYAHDEIREPLMNL 60 Query: 60 ASGKEY------------LSK---EVGSFISTGTELDFALEG-DAWFALESPRGIILTRD 103 S + +SK GS TG LD A+ G +A+F + +P G LTR+ Sbjct: 61 RSAPLFPEPKNMARPRVAVSKIDFSQGSMQFTGDPLDVAINGENAFFRVTTPNGDYLTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F ++ DG++++ G YP L + IP +G G++ G V+ + L +V Sbjct: 121 GHFLLSGDGTVMTPQG-YP-LQGTGGNVVIPAGTRNVLIGGDGQVIADGAVVNQIALINV 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLED---LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D Q + ++ P E L+G +++GF E +N + EM MI + ++F Sbjct: 179 DDPQNLEKLGHNLFRPREKVAVAEGDAYLAGARLEQGFAEAANVQVVTEMVNMIEVQRQF 238 Query: 221 NSITTLI 227 + ++ Sbjct: 239 EAYQKVM 245 >gi|322432976|ref|YP_004210225.1| flagellar basal-body rod protein FlgF [Acidobacterium sp. MP5ACTX9] gi|321165203|gb|ADW70907.1| flagellar basal-body rod protein FlgF [Acidobacterium sp. MP5ACTX9] Length = 246 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 10/220 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + A +A L T+A+N++N+ T GFR FS V+ + ++ Sbjct: 1 MDSGLYAACTALMARTDALDTIANNLANSSTGGFRARHTTFSSVLAGSGRPLASQLNEAT 60 Query: 57 -SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 S+ G +L + GS TG++LD ++G + +++ G TR+G +V+ G L+ Sbjct: 61 NSYGLLGGSHLDMQQGSLARTGSDLDVGIDGPGFLTVKTASGNAYTRNGSLQVSTQGQLI 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 +A+G+ PVL + PI IP+ + + G IS G + + L V+ S + Sbjct: 121 TATGE-PVLG-ENGPITIPRNSSV-TISADGTISANGAIAGKLKL--VEFSATADPQSMG 175 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +P + S V++G LE SN N + + ++I+ Sbjct: 176 SSYYTVPDKDVVAASKSEVRQGMLEGSNVNPVASVIELIN 215 >gi|149927799|ref|ZP_01916050.1| hypothetical protein LMED105_11310 [Limnobacter sp. MED105] gi|149823421|gb|EDM82652.1| hypothetical protein LMED105_11310 [Limnobacter sp. MED105] Length = 245 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 11/226 (4%) Query: 9 LAAQLA--LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 LAAQ A R +A+N++N +T GFR + F + + SF Sbjct: 7 LAAQAAKGTMSRQENIANNLANVNTPGFRQQLMAFQSA--PVTGEGSGSRSFAVETSIGF 64 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G STG E+D A++G+ WFA+ +G TR+G F++ G+LV+ G Y V+ Sbjct: 65 DTTPGQIQSTGREMDVAIQGEGWFAVNDAKGNEAYTRNGSFQLDGQGNLVTQEG-YSVIG 123 Query: 126 MASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 ++ PI +P + G+ IS V+ L V++ +G + R + G+ Sbjct: 124 -SNGPINVPPDHRLSFEGDGSVSAIPISGDTNVVQLGRLKLVNIPEGDINRGDDGLFRAA 182 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 P E V V GF+E SN N++ M QMI +++ + +I Sbjct: 183 NGDPAEADLNVRVAGGFIESSNVNAVDMMVQMITAARQYETQMKMI 228 >gi|332994161|gb|AEF04216.1| flagellar basal-body rod protein FlgF [Alteromonas sp. SN2] Length = 247 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 27/213 (12%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N T GFR +++ + + A + ++ F + + E G I TG +LD Sbjct: 23 ANNLANAQTTGFRA-QLEQARSMPAYGEGLPSRV-FSMTESPSNNYESGPMIQTGRDLDV 80 Query: 83 ALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A++GD WFA++ G +RDG FK+ DDG L + PVL + PI +P + + Sbjct: 81 AIQGDGWFAVQDDNGQEAYSRDGNFKLGDDGILTDVHNR-PVLG-DNGPIFLPVPLDNLD 138 Query: 142 VGEKGEISQKG-----KVIATMGLYSV------DMSQ---GFVRRENSGISPNIPPTPLE 187 +G G +S + VI +G + DM + G R E+ ++P Sbjct: 139 IGMDGTLSMRQLGAPENVIEDVGRLKLVKPNYADMERGTDGLFRMEDGTVAPAS------ 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +GV V G LE SN N++ EM MI L + + Sbjct: 193 --AGVKVMSGMLEGSNVNAVDEMVNMISLQRHY 223 >gi|27380938|ref|NP_772467.1| flagellar basal body rod protein FlgF [Bradyrhizobium japonicum USDA 110] gi|27354104|dbj|BAC51092.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 33/262 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 MQ + IGL+ Q+ LE+++ +A+N++N +T GF+ F E + + + D++ Sbjct: 1 MQNALLIGLSRQMTLERQMDVIANNVANANTNGFKADHSLFEEFLNSNAREDNFVGSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V + G +T LD A+ G+A+FA+++ TRDG+F ++ G LV Sbjct: 61 VSYVQDRGTFRDVGQGPMEATNNPLDMAINGNAFFAVQANGAERYTRDGKFTLSSTGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G VL A PI D N I+ G V G D +G +R Sbjct: 121 TSDGNL-VLGTAG-PITFQPTDHDIN------IAPDGTVTVLEGTAKTDSIRGKIR---- 168 Query: 176 GISPNIPPTPLEDLSG---------------VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P L L TV++G++E SN NS+ EM +M+ + + + Sbjct: 169 -MVTFDDPAKLTKLGANLYSAGSANQQVDTKSTVQQGYIEKSNVNSVGEMSRMVEVMRSY 227 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 +I L+ + AI +A Sbjct: 228 TAIANLLQQQSDLHKSAIEKLA 249 >gi|188576757|ref|YP_001913686.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576949|ref|YP_001913878.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521209|gb|ACD59154.1| flagellar basal-body rod protein FlgF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521401|gb|ACD59346.1| flagellar basal-body rod protein FlgF [Xanthomonas oryzae pv. oryzae PXO99A] Length = 230 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 41/243 (16%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------E 69 ++ N++N DTVGF+ A+ N +F GK Y S+ Sbjct: 1 MSHNLANVDTVGFKA----------ALAN----TEAFKIQGKGYPSRIDALHVDQGFDRS 46 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G + VLD Sbjct: 47 QGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG-HAVLDEGG 105 Query: 129 VPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS----VDMSQGFVRRENSGISPNIP 182 P+ IP + +G G IS +G+ TM + VD + R G+ N Sbjct: 106 NPMTIP-PHQAMEIGSDGSISIIPQGEGPQTMAIVGKMKVVDAPADRLTRRPDGLMRNTS 164 Query: 183 PTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKSMLE 236 P + + G T+ G LE SN ++ + +MI L ++F +I D+N +S Sbjct: 165 TDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNGDDNAQSANS 224 Query: 237 AIR 239 +R Sbjct: 225 LLR 227 >gi|183220919|ref|YP_001838915.1| flagellar basal body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911015|ref|YP_001962570.1| flagellar basal body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775691|gb|ABZ93992.1| Endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779341|gb|ABZ97639.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 265 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 43/271 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------- 49 M S G +A + + TVA+N++N +T GF+ +V F ++V + Sbjct: 1 MMRSLWTGATGMIAQQFHIDTVANNLANVNTTGFKKNRVDFEDLVYQHQVLAGTPATSVS 60 Query: 50 -----NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGII-LTR 102 ++ + A+ K + E+GSF +TG +LD AL G+ A+F ++ P G +R Sbjct: 61 EIPTGVNVGHGVKVAATQKLF---EIGSFQATGNKLDLALTGEMAFFKIQMPDGTFSYSR 117 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN---VGEKGEISQK------GK 153 DG FK+ + +V+++G + PI +P+ + I N V E+GE++ K Sbjct: 118 DGSFKIDSNQQVVTSNGY-----LLEPPIILPE-NAILNTLMVSEEGEVTVKIGNDIRPT 171 Query: 154 VIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 I + LY G + RE IP P ++ G +V +GFLE SN + Sbjct: 172 TIGQLELYRFVNPAGLQAVGKNLFRETVASGQEIPGMPSQEGYG-SVLQGFLEMSNVKIV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 EM MI + + S + I ++ + AI Sbjct: 231 EEMVNMIVAQRAYESNSKTIQTSDNMLSTAI 261 >gi|117926380|ref|YP_866997.1| flagellar basal body rod protein [Magnetococcus sp. MC-1] gi|117610136|gb|ABK45591.1| flagellar basal body rod protein [Magnetococcus sp. MC-1] Length = 269 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 31/239 (12%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------------KNDIDQKISF 58 E RLST+A+N++N +T G++ ++ F + + DI S Sbjct: 16 ELRLSTLANNLANVNTTGYKEDRLTFESFMTSPGPELHPLPTDDFMGMRGPGDIPFPFSN 75 Query: 59 VASGKEYLSKEV----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 +S ++ V G+ T L A+EG+ +F L P G TRDG F+V Sbjct: 76 PSSNAYRMTYPVAFETEVDVQQGALHGTNNPLHVAIEGEGFFVLNGPDGRRYTRDGSFEV 135 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 + G LVS G Y VL PI + D N+ G ++ G+ + T+ + Q Sbjct: 136 NNVGELVSKDG-YQVLGPGGEPIVV--GDGPVNIAPDGFVTSNGEEVGTIARVKLPSEQL 192 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 +N +P P+ D + V +GFLE SN+N + M QMI + + +I Sbjct: 193 DKVGQNQYKAPQDLEVPV-DAAQAQVHQGFLEGSNSNPIRAMTQMIEAQRAYEMHIKMI 250 >gi|23012978|ref|ZP_00052943.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 213 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 8/155 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GA---IKNDIDQK 55 M + IGL+ QLALE+ + A+N++N T GF++ +F E + GA D++ Sbjct: 1 MNNTLLIGLSHQLALERAMEVAANNVANVTTTGFKSRSAEFREYLMPGARVEAARPSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSL 114 +S+V L VG TG+ LD AL + +A+FA+++ G TR+G F++ G L Sbjct: 61 LSYVVDAATPLDLSVGQIERTGSPLDVALRDENAFFAVQTSGGERYTRNGAFQLNAAGDL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 V++ G Y VL A PI + ++G G IS Sbjct: 121 VTSDG-YTVLGTAG-PILFAKNTREISIGTDGTIS 153 >gi|313682109|ref|YP_004059847.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] gi|313154969|gb|ADR33647.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] Length = 270 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 29/236 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF-----------RTIKVKFSEVVGAIK 49 MQT + +A R+ T+A N++N +T G+ R K SE+ A + Sbjct: 1 MQTGYYAATGGMVAQFNRMDTIASNLANANTAGYKRDQLITGDFARLYKTAQSELPIANQ 60 Query: 50 ND-----IDQKISFVAS-GKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTR 102 + ++ +S V Y + +G+ T D AL + +FA+ +P+GI LTR Sbjct: 61 TEAAAQYFNRALSRVPQITDAYTDQSLGAMQRTDNTFDLALSKEGQFFAVNTPQGIRLTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATM 158 DG F + D+G LV+ G + VL PI +D + + + G+ S +++A Sbjct: 121 DGSFTLNDEGKLVNKQG-HEVLAADKTPITFNPQDSVITLDKNGQFSTNVPGTTQMVANK 179 Query: 159 GLYSVDMS--QGFVRRENSGISPNI--PPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 L V+ + ++ N+ P P TPL + SG +V +GF+E SN N++ EM Sbjct: 180 RLLVVEPQNIRNIMKEGNNLYLPEAADPLTPLAE-SG-SVMQGFIEKSNVNAVNEM 233 >gi|94969949|ref|YP_591997.1| flagellar basal-body rod protein FlgG [Candidatus Koribacter versatilis Ellin345] gi|94551999|gb|ABF41923.1| flagellar basal-body rod protein FlgG [Candidatus Koribacter versatilis Ellin345] Length = 244 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 115/245 (46%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M T + A +A Q+L A +++N +T G+R+ + F V+ GA + Sbjct: 1 MDTGSYVACAGLVARSQQLDLAAQDLANINTSGYRSQRSAFRAVLAKSAGANLTGWSAAV 60 Query: 57 S-FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + F G+ LS+ G+ TG LD LEGD +F +++P G TR G F+++ G+L Sbjct: 61 NNFGTLGETRLSRTPGNLEKTGNPLDLGLEGDGFFVVQTPAGPRYTRRGNFQISSAGALE 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G YPV +++P + + G +S G + + + V + + S Sbjct: 121 TSDG-YPVQGSLGT-VRVPNGE--LAISADGTLSVDGAIAGKLKV--VQFAPSTQLQAES 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF----NSITTLIDENE 231 G + P + +V++G +E SN N++ Q++ L + ++TT E + Sbjct: 175 GSYYSAPAGRESPAANTSVRQGMIESSNVNAIASSIQLVTLQRTAEMLQRALTTFHSEFD 234 Query: 232 KSMLE 236 ++ +E Sbjct: 235 RTAVE 239 >gi|163802602|ref|ZP_02196494.1| flagellar L-ring protein precursor H [Vibrio sp. AND4] gi|159173685|gb|EDP58504.1| flagellar L-ring protein precursor H [Vibrio sp. AND4] Length = 249 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 37/225 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L A+N++N T GFR D+ Q S A G+ S+ Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLAQARSMQAYGEGLPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 GS I+TG +LD +EGD W ++ G LTR+G KV +G L +ASG + V Sbjct: 63 GHNFAQGSVITTGRDLDVTIEGDGWISVMDHTGKEGLTRNGNLKVDQNGLLTNASG-HVV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENS 175 L PI +P +G G IS ++ +V+ + L D Q + N Sbjct: 122 LGENDAPITLPIPVSKIEIGRDGTISVLPQGAPAEELEVVDRIKLVRTD-DQNLFKDTNG 180 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P P E ++++ G +E SN N++ EM +I L ++F Sbjct: 181 LFRHKTPNQPYEVDGSISIQTGAIEGSNVNAVGEMTALIDLQRQF 225 >gi|322435953|ref|YP_004218165.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] gi|321163680|gb|ADW69385.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] Length = 251 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 12/211 (5%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI-SFVASGKEY 65 LA Q L T A+N++N T GFR + FS V+ G + + I S+ G Sbjct: 13 LARTQALDTAANNLANASTNGFRAQRDSFSGVLASGLAAGQQGSQVGVGINSYGVLGGSS 72 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G ++T LD A+ G +FA+ + G+ TRDG F ++ G L + +G+ PVL+ Sbjct: 73 ADQSQGPMVTTSNPLDVAINGTGFFAIRTAHGVRYTRDGAFTLSAQGQLQTGAGE-PVLN 131 Query: 126 MASVPIQIPQKD-EIFNVGEKGEISQKGK-VIATMGLYSVDMSQGFVRRENSGISPNIPP 183 A PI +P + +I G + G V+ +G++ + G + + P Sbjct: 132 TAMAPITLPSGEVQISGDGTVAVQTAAGSGVVGQLGIFDFASTAGLTQEGANRF--KAPD 189 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + S VK+G +E +N +S++ Q++ Sbjct: 190 DAVPTASTAMVKQGAVEGANQDSVHGTMQLV 220 >gi|256751339|ref|ZP_05492218.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus CCSD1] gi|256749721|gb|EEU62746.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus CCSD1] Length = 266 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 35/241 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY-- 65 G+ AQ + + +A+N++N +T F+ + +F ++ I + ++ + GK Sbjct: 11 GMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDL---IYQTLQRENVYGGQGKPVNM 64 Query: 66 -------LSKEV-----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 LS V GS T LD AL+G+ +FA+ P G + TRDG FK++ +G Sbjct: 65 QVGVGVRLSAIVKDFTGGSLQQTDNPLDLALDGEGFFAVLGPDGKVYYTRDGSFKLSPNG 124 Query: 113 S---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVD 164 + LV+A G YPVLD + PI ++ +V G IS K + +AT+G+Y+ Sbjct: 125 NNLMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGIYNFV 183 Query: 165 MSQGFVRRENSGISPNIP---PTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQK 219 +QG + ++ P P +D G V +GFLE SN + EM MI + Sbjct: 184 NTQGLLSVGSNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNIQIVKEMVDMIAAQRA 243 Query: 220 F 220 + Sbjct: 244 Y 244 >gi|226225712|ref|YP_002759818.1| flagellar basal-body rod protein FlgF [Gemmatimonas aurantiaca T-27] gi|226088903|dbj|BAH37348.1| flagellar basal-body rod protein FlgF [Gemmatimonas aurantiaca T-27] Length = 234 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 31/233 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 LE++ +A+N++N T GF+ + F+ ++G D I G+ Sbjct: 20 LERKQQVLANNLANASTRGFKA-ETTFARMMGNQLAKADTAIDLTP----------GTLT 68 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 T LD ALEGD +F +++P G R+G F++ + L G PVL I +P Sbjct: 69 ETHNSLDLALEGDGFFVVDTPAGERFVRNGNFRLDANRHLTDEQGN-PVLGENGA-ISLP 126 Query: 135 QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN-----IPPTPLEDL 189 Q V G I+ GK + + V + P+ IPPT Sbjct: 127 QG--TIEVDATGLITVNGKPQQRLRVERVASGTDLEHEGGTRFIPDASRQVIPPTER--- 181 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 TVK+GFLE+SN N M M +M+ + ++ + + S ++A+R IA Sbjct: 182 ---TVKQGFLEESNVNPMSAMTEMLTVLHRYGAAQQTL-----STIDAVRGIA 226 >gi|87119675|ref|ZP_01075572.1| hypothetical protein MED121_07040 [Marinomonas sp. MED121] gi|86165151|gb|EAQ66419.1| hypothetical protein MED121_07040 [Marinomonas sp. MED121] Length = 247 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 36/217 (16%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EV 70 A+N++N +T GFR D +Q + G+ Y S+ E Sbjct: 23 ANNLANVNTTGFRA--------------DFEQARAMPVYGEHYASRVYSMTENPATRYES 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ I T LD A++GD + A+ +G TR G ++T +G LV+ SG P++ A Sbjct: 69 GALIQTDRPLDIAMQGDGFIAVLDHQGAEAYTRSGDLQITANGQLVNGSG-LPIMG-ARG 126 Query: 130 PIQIPQKDEIFNVGEKGEIS---QKGKV--IATMG-LYSVDMSQGFVRRENSGISPNIPP 183 PI +P D+I ++GE G IS + G +AT+G + V+ + + G+ Sbjct: 127 PIFLPPIDKI-SIGEDGTISIVPEGGSAAEVATIGQIKLVNPDTQLIEKGTDGLLRAKAG 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 TP E +K GFLE SN +++ E+ +++ L+++F Sbjct: 186 TPFEQDFTAALKSGFLESSNVSAVEELTKIMSLSRQF 222 >gi|258514025|ref|YP_003190247.1| flagellar basal-body rod protein FlgF [Desulfotomaculum acetoxidans DSM 771] gi|257777730|gb|ACV61624.1| flagellar basal-body rod protein FlgF [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 122/264 (46%), Gaps = 46/264 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE--- 64 G A L+++++ +A+N++N +T GF+ + +K+ +Q I+ + +GK+ Sbjct: 8 GAAGMNVLQEKMNVMANNLANVNTNGFKMDQA-------VVKSFNEQLINLIDTGKDIRK 60 Query: 65 ------------------YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 Y ++ G F TG + D AL+G+ +F + G TRDG F Sbjct: 61 LRPIGNFCHGVTVDEINTYFTQ--GVFQQTGHDTDLALDGEGFFRVSGAEGDYYTRDGAF 118 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 + ++G LV++ G Y ++ + P K+ +G G+I G T+ + + D Sbjct: 119 SLDNEGYLVTSRG-YTLMGQNGPVMTEPGKN--LKIGSDGKIYLDGVEQDTLDIKNFDDL 175 Query: 167 Q-------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 Q F R EN + D + T+K+GFLE SN + EM +I +++ Sbjct: 176 QKLKKEGDNFFRVENE------ADAGVYDATNFTLKQGFLEKSNVELVNEMTDIIAVSRA 229 Query: 220 FNSITTLIDENEKSMLEAIRNIAS 243 + + L+ ++ + +A+ NI + Sbjct: 230 YETSQKLMQVQDELLGKAVNNIGT 253 >gi|74317651|ref|YP_315391.1| flagellar basal body rod protein FlgF [Thiobacillus denitrificans ATCC 25259] gi|74057146|gb|AAZ97586.1| flagellar basal body rod protein FlgF [Thiobacillus denitrificans ATCC 25259] Length = 246 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 33/240 (13%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV---ASGKEYLS 67 A+ ALEQ+ +T + N++N T GFR +F V ++ I +FV +G ++ S Sbjct: 12 AKHALEQQ-ATTSHNLANATTTGFRAQIDQFRAV--PVQGAILPTRAFVVDSTTGSDFRS 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G+ TG ELD A++GD W A+++P G TR+G K+ ++G L++ G + D Sbjct: 69 ---GAIQHTGRELDMAVQGDGWIAVQAPDGSEAYTRNGSLKLDENGVLLTRDGLQVMGDG 125 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV-----------DMSQG--FVRRE 173 P+ IP + VG+ G IS A GL S+ D+ +G + R Sbjct: 126 G--PLSIPPGRNVA-VGKDGTISLVPDGSAATGLTSIGRMKLVNPPAGDLVRGDDGLFRL 182 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G + ++ P V + G LE SN N + EM MI L ++F+ L+ E + Sbjct: 183 KDGGAADVDPK-------VALIGGALESSNVNVVDEMVNMISLARQFDMHMKLLQHAENN 235 >gi|167038473|ref|YP_001666051.1| hypothetical protein Teth39_2092 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116868|ref|YP_004187027.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857307|gb|ABY95715.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929959|gb|ADV80644.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 266 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 31/239 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G+ AQ + + +A+N++N +T F+ + +F +++ G ++ ++ Sbjct: 11 GMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGKPVNMQVG 67 Query: 58 FVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS- 113 V + K+ GS T LD AL+G+ +FA+ P + TRDG FK++ DG+ Sbjct: 68 -VGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVLGPDDKVYYTRDGSFKLSADGNT 126 Query: 114 --LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMS 166 LV+A G YPVLD + PI ++ +V G IS K + +AT+G+Y+ Sbjct: 127 LMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGIYNFVNP 185 Query: 167 QGFVRRENSGISPNIP---PTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 QG + ++ P P+ +D G V +GFLE SN + EM MI + + Sbjct: 186 QGLLSVGSNLYEPTEASGQPSTRDDFQGRMGKVMQGFLETSNVQVVKEMVDMIAAQRAY 244 >gi|148256791|ref|YP_001241376.1| flagellar basal body rod protein FlgF [Bradyrhizobium sp. BTAi1] gi|146408964|gb|ABQ37470.1| putative flagellar basal-body rod protein (flgF or flgG) [Bradyrhizobium sp. BTAi1] Length = 254 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 121/253 (47%), Gaps = 14/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 M+ + IGL+ Q+ LE++L VA+N++N +T GF+ + F E + + ++ +K Sbjct: 1 MENALLIGLSRQMVLERQLDVVANNVANVNTNGFKADQQLFEEYLSSKAHEDNFPGASRK 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V Y GS TG LD A+ G+ + +++ G TRDG + + G LV Sbjct: 61 VSYVQDRGTYRDFSQGSAQHTGNALDVAISGNGFLTVQTAAGERYTRDGNLHMNNLGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGF 169 +A+G VL PI + D N+ G ++ + + + L S Q Sbjct: 121 TAAGDL-VLGTGG-PIVLQPTDHDINISPDGTVTVVEGVNRTDSIRGKLKLVSFADPQQA 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ N+ S TP D TV++G++E SN +++ EM +M+ + + + + ++ Sbjct: 179 QKQGNNLYSAAGGVTPQPDTKS-TVQQGYIEKSNVSAVGEMSRMVEVMRSYTQVANMLQV 237 Query: 230 NEKSMLEAIRNIA 242 AI +A Sbjct: 238 QSDMRKNAIEKLA 250 >gi|167038784|ref|YP_001661769.1| hypothetical protein Teth514_0111 [Thermoanaerobacter sp. X514] gi|300913631|ref|ZP_07130948.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307723354|ref|YP_003903105.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] gi|166853024|gb|ABY91433.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter sp. X514] gi|300890316|gb|EFK85461.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307580415|gb|ADN53814.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] Length = 266 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 31/239 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G+ AQ + + +A+N++N +T F+ + +F +++ G ++ ++ Sbjct: 11 GMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGKPVNMQVG 67 Query: 58 FVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS- 113 V + K+ GS T LD AL+G+ +FA+ P G + TRDG FK++ +G+ Sbjct: 68 -VGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVLGPDGKVYYTRDGSFKLSPNGNN 126 Query: 114 --LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMS 166 LV+A G YPVLD + PI ++ +V G IS K + +AT+G+Y+ + Sbjct: 127 LMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGIYNFVNT 185 Query: 167 QGFVRRENSGISPNIP---PTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 QG + ++ P P +D G V +GFLE SN + EM MI + + Sbjct: 186 QGLLSVGSNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNIQIVKEMVDMIAAQRAY 244 >gi|313672411|ref|YP_004050522.1| flagellar basal-body rod protein flgf [Calditerrivibrio nitroreducens DSM 19672] gi|312939167|gb|ADR18359.1| flagellar basal-body rod protein FlgF [Calditerrivibrio nitroreducens DSM 19672] Length = 251 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 22/255 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DI----- 52 M + + + E+ +S +A+N++N +T G++ F + K DI Sbjct: 1 MLNGLYVAASGMMMQERVVSNIANNLANVNTNGYKKDGFTFQNYIAKPKEFPEDIIRSSL 60 Query: 53 -DQKIS-FVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVT 109 +Q I+ V + YL G+ TG + D A+ + + +F +++P GI TRDG F + Sbjct: 61 YNQTINRTVKLDRNYLDLSEGAVHQTGNKFDLAIGDKNGFFVVDTPWGIRFTRDGAFSIN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 D LV+ SG Y VL + PI I D +F GE+ G + + + + + + Sbjct: 121 SDNELVNGSG-YRVLSRNNQPIVINGNDVVF--LPTGEVMVNGVQVDQLNIATFEDNTRL 177 Query: 170 VR-RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS----IT 224 + N + +I P +E+ + + +G++E SN N++ EM +MI + F + I Sbjct: 178 QKVGRNLFAAVDILPVEMENPN---IMQGYIEGSNVNAVEEMVKMIEANRGFETYQKVIQ 234 Query: 225 TLIDENEKSMLEAIR 239 T+ NEK+ E R Sbjct: 235 TIDQLNEKASNELGR 249 >gi|301168504|emb|CBW28094.1| putative flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 289 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 42/259 (16%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--------- 57 + L+ +A ++++ T+A+N++N +T GF+ ++ F E + + +Q + Sbjct: 18 VPLSGAIAQQRKVETIANNVANANTPGFKKDQIVFKEYLTQFEKGYEQDLDLPHKEWKPE 77 Query: 58 --FVASGKEYLSKEV-GSFIS--------TGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + G E+ +V GSF TG LD AL+G + + +P G+ TR G Sbjct: 78 DFYRSYGAEHAKVKVDGSFTDFQQGQTTPTGNPLDVALKGKGFIEVLTPNGVRYTRKGNL 137 Query: 107 KVTDDGSLVSASGKY------PVLDMA--SVP------IQIPQKDEIFNVGEKGEISQKG 152 + G LV+ G P L +A ++P IQ+PQ + +GE+S Sbjct: 138 SINPAGLLVTDGGNPVLSKIDPALLLAGENLPSPQERTIQLPQNSGRLAINFQGELSNSN 197 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS----GVTVKRGFLEDSNANSMY 208 I+ + + + +++E + N E++S V +GF+E SN N++ Sbjct: 198 GKISDLSIVEFNDIHA-LKKEGNSFYIN---EKFENISTAENKTAVYQGFIEQSNVNAIQ 253 Query: 209 EMGQMIHLTQKFNSITTLI 227 EM ++I + F SI +I Sbjct: 254 EMSELIKANRNFESIQRVI 272 >gi|114567879|ref|YP_755033.1| flagellar basal-body rod protein (flgG-2) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338814|gb|ABI69662.1| flagellar basal-body rod protein (flgG-2) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 246 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 26/245 (10%) Query: 18 RLSTVADNMSNTDTVGFR---TIKVKFSEVV----GAIKNDIDQKI---SFVASGKE--- 64 R VA+N++N +T GF+ + F +++ G K D ++ S V G+ Sbjct: 7 RQDVVANNLANVNTSGFKKNTAVAKAFPDMLISRLGECKEDKQGQLKVQSPVVIGRLGTG 66 Query: 65 ------YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 Y + + T + D A+ G +F +++P G TR G FK+ +G L + S Sbjct: 67 ASISGIYTDFDNNNLKKTDSPCDLAITGAGYFVVQTPEGQRFTRCGEFKINSEGILTTNS 126 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G YPVLD PI I + F + E+G I+ G+ I + + + + Q R ++ ++ Sbjct: 127 G-YPVLDSNDSPITIEGE---FLIDEQGNINVDGENITRLKIVNFNDLQILERLGDNLLN 182 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P +E + +G++E SN N++ EM +I + + + S+ ++ ++ M +AI Sbjct: 183 SPEEPYVMERPE---MLQGYIEQSNVNAVKEMVTLISVVRAYESLQKMVQAEDEIMGQAI 239 Query: 239 RNIAS 243 + S Sbjct: 240 DKVGS 244 >gi|218135323|ref|ZP_03464127.1| hypothetical protein BACPEC_03228 [Bacteroides pectinophilus ATCC 43243] gi|217990708|gb|EEC56719.1| hypothetical protein BACPEC_03228 [Bacteroides pectinophilus ATCC 43243] Length = 256 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 28/236 (11%) Query: 16 EQRLSTVADNMSNTDTVGFRT---IKVKFSEV---------VGAIKNDIDQKISFVASGK 63 + RL V++N++N T ++ F EV VG + I V G+ Sbjct: 16 QNRLDVVSNNLANAATTAYKKEGLTSQSFDEVMAYKVKDASVGTVNQYIGDLNLGVKIGE 75 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRDGRFKVTDDGSLVSAS 118 Y GSF TG D AL GD +F++ + TRDG F +T DG LV+ Sbjct: 76 SYRDYSQGSFRETGENFDLALSGDGFFSISFTNKAGETSTMYTRDGNFSMTKDGYLVTKD 135 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G + + + PIQ+P + G I+ G I + + + ++ + + Sbjct: 136 GDFVLGEGG--PIQLPTDAAKIAIDRDGTITADGVQIDKLAITDFE-DYNYLEQYGENLY 192 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + +D +G V +G+LE SN N + EM +MI +++ F + N+K+M Sbjct: 193 RALDTATTKDAAG-QVYQGYLEQSNVNVVSEMVEMITISRAFEA-------NQKAM 240 >gi|146341903|ref|YP_001206951.1| flagellar basal body rod protein FlgF [Bradyrhizobium sp. ORS278] gi|146194709|emb|CAL78734.1| putative flagellar basal-body rod protein (flgF or flgG) [Bradyrhizobium sp. ORS278] Length = 254 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 24/258 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDID---QK 55 M+ + IGL+ Q+ LE++L VA+N++N +T GF+ + F E + GA +++ +K Sbjct: 1 MENALLIGLSRQMVLERQLDVVANNVANVNTNGFKADQQLFEEYLSSGAHEDNFPGAARK 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V Y GS TG LD A+ GD + +++ G TRDG + + G LV Sbjct: 61 VSYVQDRGTYRDFTQGSTERTGNALDVAISGDGFLTVQTAGGERYTRDGNLHMNNTGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR---- 171 +A+G VL PI D N IS G V G+ D +G +R Sbjct: 121 TAAGDL-VLGTGG-PIVFQPTDHDIN------ISPDGTVTVVEGVNRTDSIRGKLRIVSF 172 Query: 172 -------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++ + + + + + TV++G++E SN +++ EM +M+ + + + + Sbjct: 173 ADPQKAQKQGNNLYAAVGGAAPQQDTKSTVQQGYIEKSNVSAVGEMSKMVEVMRAYTQVA 232 Query: 225 TLIDENEKSMLEAIRNIA 242 ++ AI +A Sbjct: 233 NMLQVQSDLRKSAIEKLA 250 >gi|237653582|ref|YP_002889896.1| flagellar basal-body rod protein FlgF [Thauera sp. MZ1T] gi|237624829|gb|ACR01519.1| flagellar basal-body rod protein FlgF [Thauera sp. MZ1T] Length = 246 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 103/230 (44%), Gaps = 15/230 (6%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTE 79 + VA N++N D GFR K V ++ + + +F G TG Sbjct: 20 AAVAHNLANVDATGFRAELHKLRAV--EVQTEALRTRAFTVDASVANDFTEGPLQFTGRP 77 Query: 80 LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE 138 D AL G W A++ P G TR+G V+ +G L + G+ PVL P+ IP +E Sbjct: 78 FDVALAGKGWLAVQMPDGSEAYTRNGSLAVSANGVLQTRDGR-PVLGDGG-PVTIPPDNE 135 Query: 139 IFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGI--SPNIPPTPLEDLSG 191 I +G G +S Q G V L V+ + + R + G+ P P++ Sbjct: 136 I-TIGADGSVSALQPDQPGVVNVVAQLKLVNPPEAQLVRGDDGLFRLQGGAPAPVD--PN 192 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V V G+LE SN N + +M QMI L ++F T ++ E++ A R I Sbjct: 193 VRVAGGYLEGSNVNVVDQMVQMISLARQFEMQTRMLSTAEQNDRSAARVI 242 >gi|88811803|ref|ZP_01127057.1| hypothetical protein NB231_05340 [Nitrococcus mobilis Nb-231] gi|88791194|gb|EAR22307.1| hypothetical protein NB231_05340 [Nitrococcus mobilis Nb-231] Length = 261 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 125/265 (47%), Gaps = 48/265 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + R+STVA+N++N +T GF+ + KF ++V + N + + Sbjct: 11 GLDAQ---QTRMSTVANNLANVNTTGFKKDRAKFEDLVYQTVRQAGGQSSQNNRLPSGLM 67 Query: 58 F-----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 VA+ ++ ++ G+ + TG LD A+ G +F + P G + TRDG F++ D Sbjct: 68 LGTGVRVAATQKMFTQ--GNIVQTGNALDLAINGRGFFEILQPDGTLAYTRDGSFQIDDQ 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IA 156 G +V+A G P+ I IP + +G G +S Q G + I Sbjct: 126 GQVVTADG-LPL----QPAINIPPNAQSVTIGTDGTVSVQLPGSPAPTQVGNLRLTDFIN 180 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 GL + + FV+ SG +P P TP L+G+ V+ G LE SN N E+ MI Sbjct: 181 PAGLKPIGRNL-FVQTGASG-APQ-PGTP--GLNGLGLVQAGALESSNVNIAEELVNMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + F + T I ++ ML+ I N Sbjct: 236 TQRGFETNTRAIQTADQ-MLQFITN 259 >gi|255021356|ref|ZP_05293404.1| Flagellar basal-body rod protein flgG [Acidithiobacillus caldus ATCC 51756] gi|254969219|gb|EET26733.1| Flagellar basal-body rod protein flgG [Acidithiobacillus caldus ATCC 51756] Length = 261 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 42/257 (16%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKEYL 66 + ++ +A+N++N +T GF+ + F +++ GA + Q S + +G + Sbjct: 16 QTKMDVIANNLANVNTTGFKQSRAVFQDLLYQNLRQPGAQSSQTTQYPSGLQLGTGVRVV 75 Query: 67 SKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKY 121 + E G+ STG LD + G +F + P G I TRDG F++ + G LV+++G Sbjct: 76 ATERLMTQGNLTSTGNALDLGINGQGFFQIMQPDGTIAYTRDGTFQLNNQGQLVTSNGY- 134 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVDMS 166 + P+ IP + +G G +S Q I GL S+ + Sbjct: 135 ----LLQPPVTIPPNAQSITIGTDGTVSVVLPGQSQPQQVGSIQLANFINPTGLQSIGDN 190 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 +++ +SG P T L+G+ +V++G+LE SN N + E+ MI TQ+ I + Sbjct: 191 L-YLQTGSSGA----PQTGQPTLNGLGSVQQGYLESSNVNVVSELVDMIA-TQRAYEINS 244 Query: 226 LIDENEKSML-EAIRNI 241 SML AI+N+ Sbjct: 245 KAVSTSDSMLGYAIQNL 261 >gi|87306342|ref|ZP_01088489.1| FlgF [Blastopirellula marina DSM 3645] gi|87290521|gb|EAQ82408.1| FlgF [Blastopirellula marina DSM 3645] Length = 255 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 17/231 (7%) Query: 18 RLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV--- 70 R+ +A+N++N DT GF+ ++ ++S+ + K+ + G Y+S++V Sbjct: 18 RVEVLANNIANVDTTGFKRDLAVLQARYSQAIEDGKDYPNSGSINDVGGGVYVSEKVTDY 77 Query: 71 --GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G T D A+ GD +F +E LTR G F T DG+LV+ +G VLD Sbjct: 78 SRGVLKGTNVPTDLAIAGDGFFQVEIDGETYLTRAGNFTFTADGALVTPAGN-AVLDAEG 136 Query: 129 VPIQIPQKDEIFNVG----EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 P+Q+ + +VG E G + G V+ + +S + ++ P P Sbjct: 137 EPVQVDPEALANHVGNYFDENGFCTVGGDVVPLAMVKPKSVSD-LAKYGDNAFFPLAPVE 195 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 PL L + G+LE S NS+ EM MI + + + LI +N ML Sbjct: 196 PLA-LEERQTRAGYLEGSGVNSITEMMTMIEAQRAYEANVNLI-KNHDEML 244 >gi|114320058|ref|YP_741741.1| flagellar basal-body rod protein FlgF [Alkalilimnicola ehrlichii MLHE-1] gi|114226452|gb|ABI56251.1| flagellar basal-body rod protein FlgF [Alkalilimnicola ehrlichii MLHE-1] Length = 246 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 17/227 (7%) Query: 25 NMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFA 83 N++N DT GFR + S V +D + G ++ G + TG LD A Sbjct: 25 NLANVDTPGFRADLDALMSAPVRGPGHDARAYSEALTVGSDFRQ---GGIVQTGRALDVA 81 Query: 84 LEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 ++GD W A+++P G TR G ++ D G L + G + V+ A P+ IP DEI + Sbjct: 82 IDGDGWLAVQAPDGGEAYTRRGDLQIADGGLLTTGDG-HLVMGEAG-PVAIPPADEI-EI 138 Query: 143 GEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 G G +S + + L VD + +R++N G+ + E +GV + Sbjct: 139 GADGTLSIIPAGQNPDQWVELDRLKLVDPALQDLRKDNDGLFRLVDGGEAEADAGVRLVS 198 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLEAIRN 240 G E SN N + + +MI ++F + + T +EN+++ + +RN Sbjct: 199 GAYEGSNVNMVDALVKMIDHARQFETYVKMMTAAEENDQTSAQLLRN 245 >gi|285018208|ref|YP_003375919.1| flagellar basal-body rod protein flgf [Xanthomonas albilineans GPE PC73] gi|283473426|emb|CBA15931.1| probable flagellar basal-body rod protein flgf [Xanthomonas albilineans] Length = 251 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 19/253 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q TV+ N++N +T GF+ ++ +E + +I + Sbjct: 1 MDKALYVAMTGARASLQAQGTVSHNLANVETAGFKA-QLANTEAFRIQGSGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + ++VG+ TG LD +L + W A+++ G TR G +T +G LV+ASG Sbjct: 60 IDQGF-DRDVGAQQVTGNPLDVSLVANNWLAVQTSDGKEAYTRGGELALTANGQLVTASG 118 Query: 120 KYPVLDMASVPIQIP--QKDEIFNVG-----EKGEISQKGKVIATMGLYSVDMSQGFVRR 172 + VLD P+ IP Q EI N G GE Q I T+ + + Q RR Sbjct: 119 RA-VLDTEGNPMSIPPHQSLEIGNDGTVSIVPLGEGPQAMSAIGTLKVVTAPADQ-LTRR 176 Query: 173 ENSGISPNIPPTPLEDL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI-- 227 + G+ NI P + +G + G LE SN ++ + QMI L ++F +I Sbjct: 177 PD-GLMRNISEDPTKAFPLATGTALHTGALEGSNVDAAGALVQMIQLQRQFEMQVKVIKN 235 Query: 228 -DENEKSMLEAIR 239 DEN +S +R Sbjct: 236 GDENAQSANTLLR 248 >gi|296134368|ref|YP_003641615.1| flagellar basal-body rod protein FlgF [Thermincola sp. JR] gi|296032946|gb|ADG83714.1| flagellar basal-body rod protein FlgF [Thermincola potens JR] Length = 251 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 119/247 (48%), Gaps = 22/247 (8%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID----------QKISFV 59 A LA R A+N++N +T G++ F + ++ +K+ ++ Sbjct: 10 AGMLAESARNDVAANNLANVNTTGYKKDAAVFKSFPEMLIQRMEKPDNPAQLKPEKVGWL 69 Query: 60 ASG---KEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +G E ++ G T LD A+ GD +F +++P G TR+G F + +G LV Sbjct: 70 GTGVIVDEVITIHTQGQLKETTNPLDMAISGDGYFVIQTPAGERYTRNGAFTLDSEGYLV 129 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G Y + I+I D + V ++G IS G+VI T+ + S + V++ +S Sbjct: 130 TSEGNYVLGQRGR--IRIGNNDIV--VDKQGNISANGQVIDTLRIVSFNDPNRLVKQGDS 185 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + P+ +G +++ LE SN N + EM +I + + + + +I +++++ Sbjct: 186 LFAGG---QPVAGFNGQIMQKA-LETSNVNPVQEMVDLITIMRAYEANQKMIQAHDQTLG 241 Query: 236 EAIRNIA 242 +AI ++A Sbjct: 242 QAINDVA 248 >gi|160901818|ref|YP_001567399.1| flagellar basal body rod protein [Petrotoga mobilis SJ95] gi|160359462|gb|ABX31076.1| flagellar basal body rod protein [Petrotoga mobilis SJ95] Length = 240 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 25/214 (11%) Query: 18 RLSTVADNMSNTDTVG----FRTIKVKFSEVVGAIKN------DIDQKISFVASGKEYLS 67 L+++++N++N +TVG F K + + + + +N I S V + + Sbjct: 17 ELNSISNNLANLNTVGYKKDFNLFKSVYEKEIRSYQNAQGKGEPIGNIYSSVVLDEVIPN 76 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 E G + T +LDFA+EGD +F +E TR+G F ++ + LV+ SG Y VLD Sbjct: 77 LEQGPLVETSGKLDFAIEGDGFFKIERNGNYFYTRNGEFSLSPENYLVTKSGDY-VLDEE 135 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD-MSQGFVRRENSGISPNIPPTPL 186 + PI + + F V E+G IS + + + +++ + + E G + N Sbjct: 136 NNPILVDLDN--FFVDEEGNISGTNTRLNILNVENLNKYGENYFTGEELGQAGNF----- 188 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +++GFLE SN +++ EM +MI +KF Sbjct: 189 ------NMRQGFLESSNVDALNEMIKMIEANRKF 216 >gi|307266107|ref|ZP_07547652.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter wiegelii Rt8.B1] gi|306918889|gb|EFN49118.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter wiegelii Rt8.B1] Length = 266 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 31/243 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDID 53 S G+ AQ + + +A+N++N +T F+ + +F +++ G ++ Sbjct: 7 SVATGMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGKPVN 63 Query: 54 QKISFVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 ++ V + K+ GS T LD AL+G+ +FA+ P + TRDG FK++ Sbjct: 64 MQVG-VGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVLGPDDKVYYTRDGSFKLSA 122 Query: 111 DGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYS 162 DG+ LV+A G YPVLD + PI ++ +V G IS K + +AT+G+Y+ Sbjct: 123 DGNTLMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGIYN 181 Query: 163 VDMSQGFVRRENSGISPNIP---PTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLT 217 QG + ++ P P +D G V +GFLE SN + EM MI Sbjct: 182 FVNPQGLLSVGSNLYEPTEASGQPGTRDDFQGRMGKVMQGFLETSNVQVVKEMVDMIAAQ 241 Query: 218 QKF 220 + + Sbjct: 242 RAY 244 >gi|218887603|ref|YP_002436924.1| hypothetical protein DvMF_2517 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758557|gb|ACL09456.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 259 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFV 59 MQ L L E R++ +++N++N +T G++ + F + + +D I + I+ V Sbjct: 1 MQEGMLSSLFGALTNEHRMNNISNNLANVNTTGYKRDVISFKDTMQLFAHDQIMEPIANV 60 Query: 60 ASGK---------------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 S K + E GS TG LD A+ G+A+F + +P G TR+G Sbjct: 61 RSKKLFPEPMHVARPRIAVAHTDFEQGSMRYTGNPLDVAISGNAFFKVRTPEGEFYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV- 163 F T DG LV+A G D I +P E + + G+I G ++ + + +V Sbjct: 121 NFIQTADGQLVTAMGHAVQGDGGD--IALP-PGEAVQISDDGQIFAGGALVGQLNMVTVN 177 Query: 164 DMSQ-----GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 D++ G + R G N P E V +G+LE SN + EM MI + Sbjct: 178 DLTALEKLGGNMYRLRPG--SNAGEVPAER---AYVAQGYLEASNVEVVSEMVNMIEAQR 232 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 +F + ++ + EA + + Sbjct: 233 QFEAYQKVMQTTDSIDREATQKV 255 >gi|153834440|ref|ZP_01987107.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01] gi|156973588|ref|YP_001444495.1| flagellar basal body rod protein FlgF [Vibrio harveyi ATCC BAA-1116] gi|269961600|ref|ZP_06175962.1| flagellar basal-body rod protein FlgF [Vibrio harveyi 1DA3] gi|148869136|gb|EDL68168.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01] gi|156525182|gb|ABU70268.1| hypothetical protein VIBHAR_01291 [Vibrio harveyi ATCC BAA-1116] gi|269833641|gb|EEZ87738.1| flagellar basal-body rod protein FlgF [Vibrio harveyi 1DA3] Length = 249 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 37/225 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L A+N++N T GFR D+ Q S A G+ S+ Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLAQARSMQAYGEGLPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 GS I+TG +LD +EG W ++ G LTR+G KV +G L +ASG + V Sbjct: 63 GHNFAQGSVITTGRDLDITVEGSGWISVMDQTGKEGLTRNGNLKVDQNGLLTNASG-HVV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENS 175 L PI +P +G G IS ++ +V+ + L D Q + N Sbjct: 122 LGENDAPITLPIPVSKIEIGRDGTISVLPQGAPAEELEVVDRIKLVRTD-DQNLFKDTNG 180 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P P E ++++ G +E SN N++ EM +I L ++F Sbjct: 181 LFRHKTPNQPYEADGSISIQTGAIEGSNVNAVGEMTALIDLQRQF 225 >gi|119899026|ref|YP_934239.1| flagellar basal-body rod protein FlgF [Azoarcus sp. BH72] gi|119671439|emb|CAL95352.1| flagellar basal-body rod protein FlgF [Azoarcus sp. BH72] Length = 245 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 10/228 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ L+Q+ + V+ N++N + GFRT K V ++ + +F Sbjct: 12 AKGTLDQQ-AAVSHNLANATSTGFRTEMHKLRAV--EVQTEAMHTRAFTVDASVATDYSA 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G TG D A+EG W ++ P G TRDG +++ +G L + SG PVL + Sbjct: 69 GPLQFTGRPYDVAVEGKGWLTVQMPDGTEAYTRDGSLELSANGVLQTRSG-LPVLGASGA 127 Query: 130 PIQIPQKDEIFNVGEKGEIS--QKGKVIATM--GLYSVDMSQGFVRRENSGISPNIPPTP 185 PI +P EI +G G IS Q G+ + + L V+ + + R + G+ Sbjct: 128 PIALPPDTEIV-IGADGTISSLQAGQNVVNVVDQLKLVNPPEATLVRGDDGLFRTGDGAA 186 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 V V G+LE SN N + +M MI L ++F T ++ E++ Sbjct: 187 QAADPAVKVAGGYLEGSNVNVVDQMVTMISLARQFEMQTRMLQTAEQN 234 >gi|326389274|ref|ZP_08210842.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus JW 200] gi|325994637|gb|EGD53061.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus JW 200] Length = 266 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 31/239 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G+ AQ + + +A+N++N +T F+ + +F +++ G ++ ++ Sbjct: 11 GMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGKPVNMQVG 67 Query: 58 FVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS- 113 V + K+ GS T LD AL+G+ +FA+ P + TRDG FK++ DG+ Sbjct: 68 -VGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVLGPDDKVYYTRDGSFKLSADGNT 126 Query: 114 --LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMS 166 LV+A G YPVLD + PI ++ +V G IS K + +AT+G+Y+ Sbjct: 127 LMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGIYNFVNP 185 Query: 167 QGFVRRENSGISPNIP---PTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 QG + ++ P P +D G V +GFLE SN + EM MI + + Sbjct: 186 QGLLSVGSNLYEPTEASGQPGTRDDFQGRMGKVMQGFLETSNVQVVKEMVDMIAAQRAY 244 >gi|222100099|ref|YP_002534667.1| Flagellar basal-body rod protein FlgG [Thermotoga neapolitana DSM 4359] gi|221572489|gb|ACM23301.1| Flagellar basal-body rod protein FlgG [Thermotoga neapolitana DSM 4359] Length = 268 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 35/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKIS--------F 58 G++AQ + +L T+A+N++N DT G++ ++ +F +++ +KN + + Sbjct: 18 GMSAQ---QFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATSTLPTGLY 74 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 V G + +G+F TG LD A+ GD +F ++ G I TRDG FKV +G Sbjct: 75 VGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQIQLQDGRIAYTRDGSFKVDSEGR 134 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQ 167 +V+++G + VP I IP+ NV G +S Q G + + T+ L Sbjct: 135 IVTSNG------LLLVPEITIPENAVSINVSPDGIVSAELQDGTIQQLGTITLVRFVNPS 188 Query: 168 GFVR-RENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 G +N I+ P+E + G +K+GFLE SN + + EM MI Q+ Sbjct: 189 GLKSIGDNLYIATPASGDPIEGVPGQDGFGAIKQGFLEKSNVDVVREMVDMIT-AQRAYE 247 Query: 223 ITTLIDENEKSMLEAIRNI 241 + + + ML N+ Sbjct: 248 FNSRVIQTADEMLRTATNV 266 >gi|51246532|ref|YP_066416.1| flagellar basal-body rod protein (FlgF) [Desulfotalea psychrophila LSv54] gi|50877569|emb|CAG37409.1| related to flagellar basal-body rod protein (FlgF) [Desulfotalea psychrophila LSv54] Length = 248 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 118/243 (48%), Gaps = 27/243 (11%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+ L+ +Q +ST+++N++N +T GF+ + F ++ + + + I++ GK Sbjct: 9 LSGALSRQQAISTISNNLANVNTTGFKKNTLSFESILNNQQQNSAEGINYSRVGKSSTDF 68 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 + G+F T +D A++G A+F ++ G + TR G F + D L + G P+L A Sbjct: 69 KQGTFKPTENPMDLAIQGKAFFKVQGVNGALYTRRGDFGLRGDNVLTTRHG-LPILSEAG 127 Query: 129 VPIQIPQKD----------EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG-I 177 I IP + I+ +G++G + GK+ GL+ +D +N+G Sbjct: 128 GEITIPDAETSKIAFGEDGTIYILGKQGRREEVGKI----GLFEIDDPSLL---KNAGDT 180 Query: 178 SPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEMGQMIH-------LTQKFNSITTLIDE 229 S ++ E +S ++ +G LE +N N + M Q+I L + S +T+ D+ Sbjct: 181 SFSLEQGGQETISQESSLLQGNLEVANVNMVAAMAQLIDNQRAFETLNKAIKSYSTISDQ 240 Query: 230 NEK 232 +K Sbjct: 241 QDK 243 >gi|146305252|ref|YP_001185717.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] gi|145573453|gb|ABP82985.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] Length = 261 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 45/252 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 GLAAQ ++ +S VA+N++N +T GF++ +V F ++ AI+ N + I Sbjct: 11 GLAAQ---DKAMSAVANNLANVNTTGFKSDRVVFEDLFYAIELQPGAQADQVNTVPSGIQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V GS +TG +D A+ G+ +F +E+P G I T G+F++ +G Sbjct: 68 LGSGVRVAGTQKVFTEGSIQTTGQPMDLAIIGNGFFQVEAPNGDIYYTESGQFQLNAEGV 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ----- 167 +V+A G + VP I++P F VG G ++ V+A L V++ Q Sbjct: 128 IVNAQG------LPLVPGIEVPAGSSRFTVGSDGIVT---AVMAGETL-PVELGQITLAN 177 Query: 168 -----------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + RE + TP ED G +K+G LE SN + M MI + Sbjct: 178 FANPGGLEALGGNLYRETVASGEPVEGTPGEDGLG-NLKQGVLEGSNVQVVEAMVNMIAI 236 Query: 217 TQKFNSITTLID 228 + + + ++D Sbjct: 237 QRAYEANAKVLD 248 >gi|94263288|ref|ZP_01287104.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94267693|ref|ZP_01290962.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94272297|ref|ZP_01292100.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93450173|gb|EAT01484.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451895|gb|EAT02626.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456371|gb|EAT06495.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 243 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 26/230 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ L E+RL VA+N++N DT G++ F E++ + D + + G L+ Sbjct: 12 GIETMLGQERRLDQVANNLANVDTAGYKRQNTAFWEMLYNVTADRQR----IGKGSHTLT 67 Query: 68 -KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 + G+ T LD A+ G+ +F +++ +G+ TR G F++ G L +G + D Sbjct: 68 DHQQGNVQQTDNPLDLAINGEGFFRIQTDQGVRYTRAGNFELDPLGQLRMPNGGLVLGDG 127 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD-------MSQGFVRRENSGISP 179 P+ I + + +G+I Q +I + + +V+ + R E+ G Sbjct: 128 G--PVVIDEAGGEVAIDPQGQIHQNQVMIGQLDIVTVNDLTTLAKEGENLFRLEDDG--- 182 Query: 180 NIPPTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 E+++ + V++G++E SN NS+ EM MI L + + + +I Sbjct: 183 -------EEMAALDFQVRQGYVEKSNVNSIEEMTAMIDLYRNYEAQQKMI 225 >gi|28897554|ref|NP_797159.1| flagellar basal body rod protein FlgF [Vibrio parahaemolyticus RIMD 2210633] gi|153839688|ref|ZP_01992355.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ3810] gi|260364612|ref|ZP_05777214.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus K5030] gi|260878283|ref|ZP_05890638.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AN-5034] gi|260898113|ref|ZP_05906609.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus Peru-466] gi|260901955|ref|ZP_05910350.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ4037] gi|5361009|gb|AAD42916.1|U12817_10 polar flagellar FlgF homolog [Vibrio parahaemolyticus] gi|28805766|dbj|BAC59043.1| polar flagellar FlgF [Vibrio parahaemolyticus RIMD 2210633] gi|149746798|gb|EDM57786.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ3810] gi|308086109|gb|EFO35804.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus Peru-466] gi|308090198|gb|EFO39893.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AN-5034] gi|308106789|gb|EFO44329.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ4037] gi|308115108|gb|EFO52648.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus K5030] gi|328473452|gb|EGF44300.1| flagellar basal body rod protein FlgF [Vibrio parahaemolyticus 10329] Length = 249 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 13/213 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q L A+N++N T GFR + + + A + + ++ F + + + GS I+T Sbjct: 17 QALQLRANNLANVSTTGFRA-DLAQARSMQAYGDGLPSRV-FSMTERPGHNFAQGSVITT 74 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G +LD +EG W ++ G LTR+G K+ +G L +ASG + VL PI +P Sbjct: 75 GRDLDITVEGSGWISVLDHTGKEGLTRNGNLKIDQNGMLTNASG-HAVLGENDAPITLPI 133 Query: 136 KDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 +G G IS ++ +++ + L D Q + N P P E Sbjct: 134 PLSKIEIGRDGTISVLPQGAPAEELQIVDRIKLVKTD-DQSLFKDTNGLFRHKTPNQPYE 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++++ G +E SN N++ EM +I L ++F Sbjct: 193 ADGTISIQTGAIEGSNVNAVGEMTALIDLQRQF 225 >gi|121607560|ref|YP_995367.1| flagellar basal-body rod protein FlgF [Verminephrobacter eiseniae EF01-2] gi|121552200|gb|ABM56349.1| flagellar basal-body rod protein FlgF [Verminephrobacter eiseniae EF01-2] Length = 246 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 12/228 (5%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A R + +A+N++N T GFR F V ++ D + F G Sbjct: 14 AAAYRQAVLANNLANISTGGFRAQLSTFRSV--PLQGDGAKTRVFALEATSGYDDSAGPV 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G AWFA++ P G TR G F+++ G L++ G PVL A PI Sbjct: 72 QHTGRNLDALAAGRAWFAVQGPDGTEAYTRAGSFELSPTGQLLTPGG-LPVLSDAGTPID 130 Query: 133 IPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDM--SQGFVRRENSGISPNIPPTPLED 188 +P +I +G G IS K G+ T+G + ++ ++R G+ PL Sbjct: 131 MPPGADI-TLGADGSISAKVAGQPAQTVGRLKLATPGAEDPLQRGGDGLFRTASGEPLPS 189 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 + + G LE SN N + M MI ++F L+ N+KS Sbjct: 190 DADARMLAGALEGSNVNPVECMVGMIAAARQFEQQMQLLQTAQTNDKS 237 >gi|317153845|ref|YP_004121893.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316944096|gb|ADU63147.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 257 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 49/266 (18%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L L+ E R+S++A+N++N +T F+ + F +V +D +V + K +L Sbjct: 9 LFGALSNEMRMSSIANNLANVNTTAFKKDHMAFHDVFTRFAHD------YVVTTKSFLRD 62 Query: 69 E----------------------VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + G TG +LDFAL G+ +F + + TR G F Sbjct: 63 QDLFPDPKIMAKARLSDQTVDFSQGGMHQTGNQLDFALSGEGFFKAQVGGDELYTRAGNF 122 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 V DG+LV+ G +PV+ + P+ +P + V G IS G+ L + + Sbjct: 123 LVDVDGTLVTQDG-HPVM-VEGGPLSVP-PGAVMTVESDGMISINGEPAGAFDLVTFEDL 179 Query: 167 QGFVRRENSGISPNIPPTP-------LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G R + N P EDL TV++GFLE N + EM QMI + Sbjct: 180 GGMER-----VGSNFYRAPGDAAEAEPEDL---TVQQGFLEKGNVEVVTEMVQMIETQRA 231 Query: 220 FNSITTLI---DENEKSMLEAIRNIA 242 F+ ++ D +++M+ + I+ Sbjct: 232 FDMYAKVLQGTDSLDRNMITKVGKIS 257 >gi|241766921|ref|ZP_04764727.1| flagellar basal-body rod protein FlgF [Acidovorax delafieldii 2AN] gi|241362625|gb|EER58473.1| flagellar basal-body rod protein FlgF [Acidovorax delafieldii 2AN] Length = 246 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 12/228 (5%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR + +A+N++N T GFR F V ++ D + F + G Sbjct: 14 AAAQRQAVLANNLANASTQGFRAEMSTFRSV--PLQGDGSKTRVFALEATSGHLQTPGPV 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G+AWF ++ G+ TR G F+V+ G+L++++G VL A PI Sbjct: 72 QRTGRALDAMAMGNAWFGVQGLDGLEAYTRAGGFEVSSAGTLLTSTG-LTVLSDAGAPID 130 Query: 133 IPQKDEIFNVGEKGEISQK--GKVIATMGL--YSVDMSQGFVRRENSGISPNIPPTPLED 188 +P E+ ++G G IS K G+ T+G + + ++R + G+ PL + Sbjct: 131 VPPGAEV-SLGADGTISAKTAGQPATTIGRLKLATPTADNPLKRGDDGLFRTTSGDPLPN 189 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 + G +E SN N++ M MI ++F L+ + N+KS Sbjct: 190 DPTARMLAGAIEGSNVNAVESMVGMIAAARQFEQQMKLLQTAETNDKS 237 >gi|170288994|ref|YP_001739232.1| flagellar basal-body rod protein FlgG [Thermotoga sp. RQ2] gi|170176497|gb|ACB09549.1| flagellar basal-body rod protein FlgG [Thermotoga sp. RQ2] Length = 261 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 35/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKIS--------F 58 G++AQ + +L T+A+N++N DT G++ ++ +F +++ +KN + + Sbjct: 11 GMSAQ---QFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATSSLPTGLY 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 V G + +G+F TG LD A+ GD +F ++ G I TRDG FK+ +G Sbjct: 68 VGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQIQLQDGRIAYTRDGSFKIDSEGR 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQ 167 +V+++G + VP I IP+ NV G +S Q G + + T+ L Sbjct: 128 IVTSNG------LLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGTITLVRFVNPS 181 Query: 168 GFVR-RENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 G +N I+ P+E + G +K+GFLE SN + + EM MI Q+ Sbjct: 182 GLKSIGDNLYIATPASGDPIEGVPGQDGFGAIKQGFLEKSNVDVVREMVDMIT-AQRAYE 240 Query: 223 ITTLIDENEKSMLEAIRNI 241 + + + ML N+ Sbjct: 241 FNSRVIQTADEMLRTATNV 259 >gi|332140547|ref|YP_004426285.1| flagellar basal-body rod protein FlgF [Alteromonas macleodii str. 'Deep ecotype'] gi|327550569|gb|AEA97287.1| flagellar basal-body rod protein FlgF [Alteromonas macleodii str. 'Deep ecotype'] Length = 247 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 27/225 (12%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N T GFR +++ + + A + ++ F + + E G I T +LD Sbjct: 23 ANNLANAQTTGFRA-QLEQARSMPAYGEGLPTRV-FSMTESPSNNYESGPMIKTDRDLDV 80 Query: 83 ALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A++GD WFA++ G +RDG FK+ DDG L + + D + PI +P + N Sbjct: 81 AIQGDGWFAVQDQNGQEAYSRDGNFKLGDDGILTDIHDRVVLGD--NGPIFLPVPLDNLN 138 Query: 142 VGEKGEISQK-----GKVIATMGLYSV------DMSQ---GFVRRENSGISPNIPPTPLE 187 + G +S + VI +G + DM + G R E+ I+P Sbjct: 139 IAADGTLSMRQLGAPANVIEEVGRLKLVSPNYADMERGNDGLFRMEDGSIAPAN------ 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + V V G LE SN N++ EM MI L + + ++ + EK Sbjct: 193 --ANVKVMSGMLEGSNVNAVDEMVDMISLQRHYELQVKMMKQAEK 235 >gi|261856358|ref|YP_003263641.1| flagellar basal-body rod protein FlgG [Halothiobacillus neapolitanus c2] gi|261836827|gb|ACX96594.1| flagellar basal-body rod protein FlgG [Halothiobacillus neapolitanus c2] Length = 262 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 46/263 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKN---------D 51 GL AQ + R+S +++N++N +T GF+ + F ++ VGA + Sbjct: 12 GLDAQ---QTRMSVISNNLANVNTTGFKQDRAVFEDLIYQNYRQVGAANTQQNEVPTGLN 68 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 I + VA+ K + G+ ++T LD A+ G +F + P G + TRDG F + Sbjct: 69 IGTGVKVVATEKNHTQ---GNLVTTNNALDLAINGRGFFQVLQPDGSVAYTRDGSFSLDS 125 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGF 169 +G +V+A+G YP+ I +PQ + VG+ G +S Q + ++D++ F Sbjct: 126 NGQVVTANG-YPL----QPAITVPQGAQSITVGKDGTVSVQLAGQAQPSQVGTIDLAD-F 179 Query: 170 VRRENSGISP------------NIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHL 216 V +G+ P P T L+GV +++G LE SN N + E+ MI Sbjct: 180 VNP--AGLQPIGDNLFLESGSSGAPQTSTPGLNGVGNMQQGMLESSNVNVVEELVSMIE- 236 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 TQ+ + + SML+ + Sbjct: 237 TQRAYEMNSKAISATSSMLQTLN 259 >gi|91225874|ref|ZP_01260843.1| polar flagellar FlgF [Vibrio alginolyticus 12G01] gi|254230139|ref|ZP_04923534.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|262394938|ref|YP_003286792.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|269965423|ref|ZP_06179542.1| flagellar basal-body rod protein FlgF [Vibrio alginolyticus 40B] gi|91189524|gb|EAS75800.1| polar flagellar FlgF [Vibrio alginolyticus 12G01] gi|151937332|gb|EDN56195.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|262338532|gb|ACY52327.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|269829902|gb|EEZ84132.1| flagellar basal-body rod protein FlgF [Vibrio alginolyticus 40B] Length = 249 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 35/224 (15%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L A+N++N T GFR D+ Q S A G+ + S+ Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLAQARSMQAYGEGHPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 GS I+TG +LD +EG W ++ G LTR+G KV +G L +ASG + V Sbjct: 63 GHNFAQGSVITTGRDLDVTIEGSGWISVLDHTGKEGLTRNGNLKVDQNGMLTNASG-HLV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-------SQGFVRRENSG 176 L PI +P +G G IS + +VD Q + N Sbjct: 122 LGENDAPITLPIPLSKIEIGRDGTISVLPQGAPAEEFQAVDRIKLVKPNDQSLFKDTNGL 181 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P P E + V+++ G +E SN N++ EM +I L ++F Sbjct: 182 FRHKTPNQPYEADATVSLQTGAIEGSNVNAVGEMTALIDLQRQF 225 >gi|330445349|ref|ZP_08309001.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489540|dbj|GAA03498.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 249 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 37/231 (16%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EV 70 A+N++N +T GFR D+ Q S A G+ S+ Sbjct: 23 ANNLANVNTTGFRA--------------DLQQARSMQAYGEGMPSRVFSMAERPGNDFAQ 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 GS I+TG +LD A++GD W A+ +G TR G K+ G L +++G+ +L Sbjct: 69 GSVINTGRDLDVAIQGDGWLAVMDAKGQEAYTRAGHLKIDQTGMLQNSNGQL-LLGQNDS 127 Query: 130 PIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 PI IP +G+ G +S V+ + L SVD +Q + + Sbjct: 128 PIFIPLPISKIEIGKDGTVSVLPQGAPPDAMAVVDRIKLVSVD-NQALFKDTDGLFKLTG 186 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 P++ + VT+ +G LE SN N++ EM MI L + F L+ E+ Sbjct: 187 DRIPMDADANVTLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAEE 237 >gi|254458078|ref|ZP_05071505.1| flagellar basal-body rod protein FlgG [Campylobacterales bacterium GD 1] gi|207085471|gb|EDZ62756.1| flagellar basal-body rod protein FlgG [Campylobacterales bacterium GD 1] Length = 262 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 127/274 (46%), Gaps = 47/274 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S L ++ ++ T A+N++N +T+GF+ + +FS+++ G +D+ Sbjct: 1 MMQSLYTASTGMLGMQTQIDTTANNIANVNTIGFKKSRAEFSDLMYKVMSYAGTATSDVT 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + + + G + GS T +LD A+ G +F LE P G + +R+G F Sbjct: 61 KSPTGIEVGLGVRPTAINKIFSEGSLKQTDNQLDVAITGRGFFKLELPDGTEVYSRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM------ 158 KV D+GS+V++ G V + I IP ++G G ++ Q G+ AT Sbjct: 121 KVDDNGSMVNSDGYKLVPE-----IVIPPDATDISIGTDGTVTVVQPGQTQATQIGQITL 175 Query: 159 -------GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSM 207 GL+S R +N + + P+E GV +++GF+E SN + Sbjct: 176 TNFINPAGLHS--------RGDNLYLETDSSGQPVEGTPGVDGLGVLRQGFVELSNVELV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ +I + ++S + +I +++ ML+ N+ Sbjct: 228 VELTDLITGQRAYDSNSKVITTSDE-MLQTTNNL 260 >gi|254478074|ref|ZP_05091457.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035936|gb|EEB76627.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] Length = 266 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 31/239 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G+ AQ + + +A+N++N +T F+ + +F +++ G ++ ++ Sbjct: 11 GMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGRPVNMQVG 67 Query: 58 FVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS- 113 V + K+ G+ TG LD AL+G +FA+ P + TRDG FK++ DG+ Sbjct: 68 -VGVRPSAIVKDFSEGNLYQTGNPLDLALDGPGFFAVLGPDDKVYYTRDGSFKLSPDGNT 126 Query: 114 --LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMS 166 LV+A G YPVLD ++ PI V G I K + +AT+G+Y+ Sbjct: 127 LMLVTADG-YPVLDDSNNPIVFDGNVNDITVSPLGVIQVKNPDGTTQEVATLGIYNFTNP 185 Query: 167 QGFVRRENS---GISPNIPPTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 QG + N+ + P +D G V +GFLE SN + EM MI + + Sbjct: 186 QGLLSVGNNLYEATEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVDMIAAQRAY 244 >gi|168335334|ref|ZP_02693430.1| Flagellar basal body and hook proteins [Epulopiscium sp. 'N.t. morphotype B'] Length = 256 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 28/246 (11%) Query: 17 QRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQ------KISFVASGKE--- 64 +R+ ++++++N++T +R + F EV+ + I++ + V +G + Sbjct: 17 RRMDVISNDLANSNTTAYRKDYAVVEAFDEVLMKRLDGINEPPWRYKDLGTVMNGAKVAD 76 Query: 65 -YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y G+ I TG + A+ G +F +E+P G LTRDG F V DG LV+A G YPV Sbjct: 77 IYTDFRPGNLILTGISNNLAINGLGFFRVETPNGERLTRDGSFTVNGDGVLVTAXG-YPV 135 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQGFVRR-ENSG 176 L QI N G + ++ G+V I T+ + +VD Q V+ +N Sbjct: 136 LGENG---QIALGRTFLNEGREMQVLPDGQVVLNTVTINTIDIVNVDDPQLLVKEADNLF 192 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + + P+ L +++G+LE SN N + M MI +++ + + ++ +++ + Sbjct: 193 DATGLQLNPINSL----IEQGYLESSNVNPVNAMVDMISVSRAYEANQRMVQIHDELVGR 248 Query: 237 AIRNIA 242 A+ ++ Sbjct: 249 AVNDVG 254 >gi|20806699|ref|NP_621870.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|20515153|gb|AAM23474.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] Length = 266 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 31/239 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G+ AQ + + +A+N++N +T F+ + +F +++ G ++ ++ Sbjct: 11 GMTAQ---QLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGRPVNMQVG 67 Query: 58 FVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS- 113 V + K+ G+ TG LD AL+G +FA+ P + TRDG FK++ DG+ Sbjct: 68 -VGVRPSAIVKDFSEGNLYQTGNPLDLALDGPGFFAVLGPDDKVYYTRDGSFKLSPDGNT 126 Query: 114 --LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMS 166 LV+A G YPVLD ++ PI V G I K + +AT+G+Y+ Sbjct: 127 FMLVTADG-YPVLDDSNNPIVFDGNVNDITVSPLGVIQVKNPDGTTQEVATLGIYNFTNP 185 Query: 167 QGFVRRENS---GISPNIPPTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 QG + N+ + P +D G V +GFLE SN + EM MI + + Sbjct: 186 QGLLSVGNNLYEATEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVDMIAAQRAY 244 >gi|94495410|ref|ZP_01301990.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] gi|94424798|gb|EAT09819.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] Length = 247 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 111/247 (44%), Gaps = 36/247 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M N L A R +++A+N++N +TVGFR +E+ A I Q SF Sbjct: 1 MDRLVNTALTAMRGAMARQASIANNLANANTVGFR------AEIANAETRWI-QGESFDT 53 Query: 59 -VASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 + ++ ++ ++ G+ TG LD AL+GDA +++ G TR G KV+D G L Sbjct: 54 RAQASEQVIAADMAQGAVTETGNPLDVALDGDALLTVQATDGSEAYTRRGDLKVSDSGLL 113 Query: 115 VSASGKYPVLDMASVPIQIPQKD--------EIFNVGEKGEISQ-----KGKVIATMGLY 161 + G PVL P+ +PQ D I+ V + G+ + K K++ G Sbjct: 114 TTGDG-LPVLGEGG-PVILPQMDSVSIAKDGSIWGVPQGGDPANPQQVDKLKLVNAAGSS 171 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + G R N G +P PL TV G LE SN NS + MI ++ + Sbjct: 172 IAKGNDGLFREVNGGA---LPSDPL-----ATVTSGSLEGSNVNSTQALIDMIEASRAWE 223 Query: 222 SITTLID 228 + +ID Sbjct: 224 TQVKMID 230 >gi|307609978|emb|CBW99507.1| flagellar biosynthesis protein FlgF [Legionella pneumophila 130b] Length = 248 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 118/243 (48%), Gaps = 32/243 (13%) Query: 17 QRLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 +R +A+N++N +T GF+ + + + A N+ SF+ + G I Sbjct: 17 KRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSFITQNANGIDTSPGEII 76 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG +LD A++GD W A++ +G TR G ++ +G L++ASGK + D PI I Sbjct: 77 TTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNPNGQLITASGKVVLGDGG--PISI 134 Query: 134 PQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMS------QGFVRRENSGISP 179 P I +G G IS + ++ + L ++D + +G ++ ++ + Sbjct: 135 PPAQSI-EIGSDGTISIVPLEGDVKSLAILDRIKLVTLDKNNIYKNDEGLIQLKSGAATA 193 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLE 236 N S + ++ G LE SN N++ +M MI ++F++ + + +D+N + + + Sbjct: 194 N---------SNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQKLAQ 244 Query: 237 AIR 239 ++ Sbjct: 245 LLQ 247 >gi|15644290|ref|NP_229342.1| flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8] gi|148270380|ref|YP_001244840.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1] gi|281412686|ref|YP_003346765.1| flagellar basal-body rod protein FlgG [Thermotoga naphthophila RKU-10] gi|4982109|gb|AAD36609.1|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8] gi|147735924|gb|ABQ47264.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1] gi|281373789|gb|ADA67351.1| flagellar basal-body rod protein FlgG [Thermotoga naphthophila RKU-10] Length = 261 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 35/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKIS--------F 58 G++AQ + +L T+A+N++N DT G++ ++ +F +++ +KN + + Sbjct: 11 GMSAQ---QFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATSSLPTGLY 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 V G + +G+F TG LD A+ GD +F ++ G I TRDG FK+ +G Sbjct: 68 VGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQIQLQDGRIAYTRDGSFKMDSEGR 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQ 167 +V+++G + VP I IP+ NV G +S Q G + + T+ L Sbjct: 128 IVTSNG------LLLVPEITIPENAVSINVSPDGIVSAELQDGTIQELGTITLVRFVNPS 181 Query: 168 GFVR-RENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 G +N I+ P+E + G +K+GFLE SN + + EM MI Q+ Sbjct: 182 GLKSIGDNLYIATPASGDPIEGVPGQDGFGAIKQGFLEKSNVDVVREMVDMIT-AQRAYE 240 Query: 223 ITTLIDENEKSMLEAIRNI 241 + + + ML N+ Sbjct: 241 FNSRVIQTADEMLRTATNV 259 >gi|330721007|gb|EGG99168.1| Flagellar basal-body rod protein FlgF [gamma proteobacterium IMCC2047] Length = 246 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 52/247 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S I + + + + A+N++N +T+GFR+ D Q + Sbjct: 1 MDKSLYIAMTGAVQNARGTAIHANNLANVNTMGFRS--------------DYAQARAMPV 46 Query: 61 SGKEYLSK------------EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFK 107 G+ Y S+ G+ + TG ELD A+ G+ W A+++P G TR G K Sbjct: 47 YGETYASRVYAMEENPGTNFAYGTLVETGNELDVAVNGEGWIAVQTPDGGEAYTRAGEMK 106 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMG 159 V G L + +G PV+ PI +P + I +G+ G IS +G + + Sbjct: 107 VDSLGILRNGNG-LPVMGQGG-PIALPPFERI-TIGQDGTISIQGAGANPGSLSQVDRIK 163 Query: 160 LYSVDMSQ------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L + D SQ G +R+ + +P + V V GFLE SN NS+ + ++ Sbjct: 164 LVNPDASQLYKGNDGLMRQRDGQAAPAD--------AAVGVSAGFLEGSNVNSVEALTEL 215 Query: 214 IHLTQKF 220 I L+++F Sbjct: 216 ISLSRQF 222 >gi|307293786|ref|ZP_07573630.1| flagellar basal-body rod protein FlgF [Sphingobium chlorophenolicum L-1] gi|306879937|gb|EFN11154.1| flagellar basal-body rod protein FlgF [Sphingobium chlorophenolicum L-1] Length = 246 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 110/249 (44%), Gaps = 40/249 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQKI 56 M N L A R + +++N++N +T GFR +E+ A IK D + Sbjct: 1 MDRLVNTALTAMRGAMARQAAISNNLANVNTTGFR------AEIANAETRWIKGD---NL 51 Query: 57 SFVASGKEYL---SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 + A E + G+ TG LD A+ GDA A+++P G TR G KV+D G Sbjct: 52 NTRAQASEQVVAADMAQGAVTETGNPLDVAMNGDAMLAVQAPDGGEAYTRRGDLKVSDSG 111 Query: 113 SLVSASGKYPVLDMASVPIQIPQKD--------EIFNVGEKGEISQ-----KGKVIATMG 159 L + G VL PI +PQ D I+ V + G+ + K K+++ +G Sbjct: 112 LLTTGDGLV-VLGEGG-PITLPQMDSISIARDGSIWGVPQGGDPANPQQVDKLKLVSPVG 169 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + G R N G +P PL ++G G LE SN N+ + QMI ++ Sbjct: 170 SSIAKGTDGLFREVNGGA---LPDDPLASVTG-----GSLEGSNVNATSALVQMIEASRA 221 Query: 220 FNSITTLID 228 + + +ID Sbjct: 222 WETQVKMID 230 >gi|296531727|ref|ZP_06894555.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] gi|296267943|gb|EFH13742.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] Length = 260 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 35/265 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKND----- 51 + NI A + + +A N++N T F K +F E VG+ ++ Sbjct: 3 AMNIAATGMQAQQTNVEVIAHNIANVSTTAFTRRKAEFQDLLYQSGERVGSASSEAGTLL 62 Query: 52 -IDQKISFVASGKEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 + ++ V G+ TG D ALEG +F ++ P G + TRDG FK+ Sbjct: 63 PVGTQVGLGVRNSAINRITVQGTLNETGNRYDLALEGRGYFGIDLPDGTVAYTRDGSFKL 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQ-----IPQKDEIFNVGEKGEISQKGKVIATM----- 158 + +G +V+ G YP+ +VPI + Q E+ G+ G++ + Sbjct: 123 SQEGQIVTTEG-YPIQPAINVPIDARDVTVNQAGEVLVTQANGQQQNAGRLNLFLFPNEA 181 Query: 159 GLYSVDMSQGFVRRENSGISPN--IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 GL ++ ++ F+ E SG PN +P P V++G+LE SN N + E+ Q+I Sbjct: 182 GLEAIGGNK-FLETEASG-QPNQGLPSDP----GYARVRQGYLEASNVNVVQEITQLIAA 235 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I+ ++ ML+ N+ Sbjct: 236 QRAYEMNSKVIEATDQ-MLQTANNV 259 >gi|294013087|ref|YP_003546547.1| flagellar basal-body rod protein FlgF [Sphingobium japonicum UT26S] gi|292676417|dbj|BAI97935.1| flagellar basal-body rod protein FlgF [Sphingobium japonicum UT26S] Length = 246 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 34/246 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISF 58 M N L A R + +++N++N +T GFR +E+ A I D + Sbjct: 1 MDRLVNTALTAMRGAMARQAAISNNLANVNTTGFR------AEIANAETRWIKGDNLNTR 54 Query: 59 VASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 + ++ ++ ++ G+ TG LD A+ GDA A+++P G TR G KV+D G L Sbjct: 55 AQASEQVIAADMAQGAINETGNPLDVAMNGDAMLAVQAPDGGEAYTRRGDLKVSDSGLLT 114 Query: 116 SASGKYPVLDMASVPIQIPQKD--------EIFNVGEKGEISQ-----KGKVIATMGLYS 162 + G VL PI +PQ D I+ V + G+ + K K++ +G Sbjct: 115 TGDGLV-VLGEGG-PITLPQMDSVSIAKDGSIWGVPQGGDPANPQQVDKLKLVNPVGSSI 172 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + G R N G+ P+ P TV G LE SN N+ + QMI ++ + + Sbjct: 173 AKGTDGLFREANGGVLPDDPI--------ATVTGGSLEGSNVNATSALVQMIEASRAWET 224 Query: 223 ITTLID 228 +ID Sbjct: 225 QIKMID 230 >gi|317050614|ref|YP_004111730.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] gi|316945698|gb|ADU65174.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] Length = 259 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 29/256 (11%) Query: 10 AAQLALEQR-LSTVADNMSNTDTVGFRT--IKV-KFSEVVGAIKNDIDQKISFVAS---- 61 A+ + L+ R L A+N++N +TVGF+ I V F + D ++ F + Sbjct: 9 ASGMVLQSRKLDASANNLANVNTVGFKKDIISVDNFRAKSTTREEDAWRRTLFNETINNT 68 Query: 62 ---GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 K ++ G+ TG LD + G+A+ +++P G TR G ++ +G L + Sbjct: 69 HNIAKIHVDHSQGALHQTGNSLDVGINGNAFLVVDTPFGERYTRGGNLQIDSEGRLTTKE 128 Query: 119 GKYPVL-----DMASVPIQI--PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G YP+ D A P I P+ +I + +GEI + IAT+ L + + + Sbjct: 129 G-YPLKAALEEDDAEGPAHIFLPEASDII-INAQGEIFVDEEFIATLSLVRFEDERDLRK 186 Query: 172 ---RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL-- 226 + + +S ++ P E + +G+LE SN N + EM M+ L + F++ + Sbjct: 187 VGFNQLARVSADVEAYPAEHFE---LHQGYLESSNVNIVREMTDMVELNRSFSAYQKMIS 243 Query: 227 -IDENEKSMLEAIRNI 241 IDE ++L+A ++I Sbjct: 244 SIDETVSTLLQAGKSI 259 >gi|148358807|ref|YP_001250014.1| flagellar basal body rod protein FlgF [Legionella pneumophila str. Corby] gi|296106852|ref|YP_003618552.1| flagellar basal-body rod protein FlgF [Legionella pneumophila 2300/99 Alcoy] gi|148280580|gb|ABQ54668.1| flagellar basal body rod protein FlgF [Legionella pneumophila str. Corby] gi|295648753|gb|ADG24600.1| flagellar basal-body rod protein FlgF [Legionella pneumophila 2300/99 Alcoy] Length = 248 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 32/243 (13%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVASGKEYLSKEVGSFI 74 +R +A+N++N +T GF+ + + N +Q SF+ + G I Sbjct: 17 KRQEIIANNLANINTPGFKADLYQAQTMYMNNANGKNQFSAHSFITQNANGIDTSPGEII 76 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG +LD A++GD W A++ +G TR G ++ +G L++ASGK + D PI I Sbjct: 77 TTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNPNGQLITASGKVVLGDGG--PISI 134 Query: 134 PQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMS------QGFVRRENSGISP 179 P I +G G IS + ++ + L ++D + +G ++ ++ + Sbjct: 135 PPAQSI-EIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNNIYKNDEGLIQLKSGAATA 193 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLE 236 N S + ++ G LE SN N++ +M MI ++F++ + + +D+N + + + Sbjct: 194 N---------SNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQKLAQ 244 Query: 237 AIR 239 ++ Sbjct: 245 LLQ 247 >gi|15607023|ref|NP_214405.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] gi|2984276|gb|AAC07801.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] Length = 241 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 24/236 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-QKISFVA 60 QT + +G L E++L +NM+N +T F+ K + V + N Q + Sbjct: 6 QTIYILG-GGMLLQERKLDVSTNNMANVNTPAFK--KDYLTAVSYYVPNGQKVQNTNPFE 62 Query: 61 SGKEYLSKEV---------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 Y+ V G+ + T LD A+EG+ +FA+ P GI+ TR G F++ ++ Sbjct: 63 PSNNYVYPIVNEVIPVLSQGALVKTENPLDLAIEGEGFFAVRGPNGILYTRKGIFRINEE 122 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G L + G Y VLD PIQI ++ + + G I + +G++++ Q Sbjct: 123 GFLTTEEG-YQVLDENLNPIQIQGQN--VKITKDGTIFVDENPVGRLGIFNLQNIQKLGE 179 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G PTP D V +GF E SN N++ EM ++I + LI Sbjct: 180 DFFQG-----NPTPATDYR---VYQGFYEASNVNAVKEMVKVIEAVSAHEIFSKLI 227 >gi|78777301|ref|YP_393616.1| flagellar basal body rod protein FlgG [Sulfurimonas denitrificans DSM 1251] gi|78497841|gb|ABB44381.1| Flagellar basal-body rod FlgG [Sulfurimonas denitrificans DSM 1251] Length = 262 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 132/270 (48%), Gaps = 39/270 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S + ++ +++T A+N++N +T+GF+ + +F++++ G +D+ Sbjct: 1 MMQSLYTASTGMIGMQTQINTTANNIANVNTIGFKKSRAEFADLMYKVMDYAGTSTSDVT 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + + + G + GS T ELD A+ G +F LE P G + +R+G F Sbjct: 61 KSPTGIEVGLGVRPTAINKVFSEGSLKQTDNELDVAVTGKGFFKLELPDGSEVYSRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM------ 158 KV ++GS+V++ G V ++ IP N+G G +S Q G+ AT Sbjct: 121 KVDENGSIVNSDGYRLVPEVV-----IPPDATNINIGTDGTVSVVQAGQAQATQIGQMTL 175 Query: 159 -------GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 GL+S+ ++ ++SG P + TP D GV +++GF+E SN + E+ Sbjct: 176 TNFINPAGLHSMG-DNLYIETDSSG-QP-VEGTPGLDGLGV-LRQGFVELSNVELVVELT 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + ++S + +I +++ ML+ N+ Sbjct: 232 DLITGQRAYDSNSKVITTSDE-MLQTTNNL 260 >gi|269792758|ref|YP_003317662.1| hypothetical protein Taci_1148 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100393|gb|ACZ19380.1| protein of unknown function DUF1078 domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 263 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 24/236 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRT-IKVKFS---EVVGAIKNDIDQ--KISFVAS 61 G +A L E+ L V +N++N DT GFR I V S E++ I+ +D K F Sbjct: 8 GTSAMLVQEKMLDVVGNNLANVDTSGFRARIAVNKSFPEELMDRIERSMDPVVKEGFAPG 67 Query: 62 GK--------------EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 G+ + +G+ TG LD A+EG+ +F ++ G TR G F Sbjct: 68 GRIPIGVLSLANVLHETAMRTTMGALERTGAPLDLAIEGEGFFVVQDGAGNTFYTRSGHF 127 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 + + G +V+ G + D PI+I + ++ VGE G++ G+ + T+ + Sbjct: 128 QRNEQGQVVTHEGMLLLGDGG--PIEIGEGTQVL-VGEDGQVFVDGEAVGTVRVVRFQTP 184 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 S ++ ED+ + GFLE SN N + EM +MI + + + Sbjct: 185 SRLRNVGKSLLAETQESGAPEDVEAPKLAVGFLERSNVNVVEEMTKMIEANRAYEA 240 >gi|307546967|ref|YP_003899446.1| flagellar basal body rod protein FlgF [Halomonas elongata DSM 2581] gi|307218991|emb|CBV44261.1| flagellar basal body rod protein FlgF [Halomonas elongata DSM 2581] Length = 253 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 30/239 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLSKEVG 71 ++EQ+ V+ N+SN T GFR V ++D ++S AS G ++ G Sbjct: 15 SMEQQ-GVVSHNLSNVSTTGFRAQLHAMRAVPVQGDGELDTRVSVAASTPGSDF---SPG 70 Query: 72 SFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 TG LD A++G+AW A+++ G TR G +V DG L SA PV+ P Sbjct: 71 PMNRTGRTLDVAMQGNAWLAVQASDGSEAYTRRGDLQVDGDGLLRSAG--RPVIGENGGP 128 Query: 131 IQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPP- 183 IQ+P ++ ++G G IS Q+ +A +G + V QG + R G+ PP Sbjct: 129 IQVPLGSQL-SMGSDGTISAIAPGQQADALAAVGRIKLVTPEQGGLERGVDGLF-RAPPG 186 Query: 184 -------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEK 232 P +D + V G LE SN +++ M MI + +++ T +I DEN + Sbjct: 187 EDGAVAALPADDQA--QVVSGALEGSNVSAVDAMVSMIDVARRYELQTKVIETADENAQ 243 >gi|268317781|ref|YP_003291500.1| flagellar basal-body rod protein FlgG [Rhodothermus marinus DSM 4252] gi|262335315|gb|ACY49112.1| flagellar basal-body rod protein FlgG [Rhodothermus marinus DSM 4252] Length = 262 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 122/260 (46%), Gaps = 41/260 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----------- 55 +G+ AQ + + +A N++N +T GF+ +V F +++ Q+ Sbjct: 10 LGMNAQ---QTNVDNIAHNLANANTTGFKNARVVFQDLLYQTVQTPGQEEAEGLTPPASL 66 Query: 56 -----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 ++ VA+ +++ GS + TG LD A+ GD +F + P G I+ TRDG F + Sbjct: 67 QLGSGVAVVATVRQFTQ---GSLVETGNALDLAINGDGFFQIRRPDGTIVYTRDGTFTLN 123 Query: 110 DDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEIS-------QKGKVIAT 157 DG+ V+ +G P+ SVP I I Q D + +V +GE + + Sbjct: 124 ADGTFVTQTG-LPLEPELSVPPDTIEIHISQ-DGVVSVRLQGETESVEIGRLELARFPNP 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL ++ + + + E SG I P E+ G TVK+GFLE +N + + EM +I Sbjct: 182 AGLRAIGGNL-YEQTEASGFP--ILGAPGEEGFG-TVKQGFLEAANVDVVQEMVNLITAQ 237 Query: 218 QKFNSITTLIDENEKSMLEA 237 + + + ++ E+ + A Sbjct: 238 RAYEINSKMVTTTEEMLQTA 257 >gi|242278483|ref|YP_002990612.1| flagellar basal-body rod protein FlgF [Desulfovibrio salexigens DSM 2638] gi|242121377|gb|ACS79073.1| flagellar basal-body rod protein FlgF [Desulfovibrio salexigens DSM 2638] Length = 255 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 35/249 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M++S L ++ E R+ A+N++N +T GF+ F + +D +VA Sbjct: 1 MRSSIFSALFGAMSNEHRIDISANNLANVNTTGFKRDNCAFQDTFIRFAHD------YVA 54 Query: 61 SGKEYL-----------------SKEV-----GSFISTGTELDFALEGDAWFALESPRGI 98 K YL S+EV GSF TG LD A+ GD +F ++ Sbjct: 55 DAKPYLRDKDQLPEAKIMARPRLSEEVIDMSQGSFQKTGNPLDLAIRGDGFFKVQKNGET 114 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 LTR+G F ++ +G+LV+ G YPV+ + +P + + GE G I G+ + + Sbjct: 115 FLTRNGVFTLSSEGTLVTEQG-YPVMANGG-EVNLPPRSRVAVDGE-GVIFADGQEVGRL 171 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + + + S P E V +G++E SN + EM MI + Sbjct: 172 DFVQPADYRALKKEGENLFSNEGGEVPAEG----EVAQGYIEKSNVEVVNEMVAMIECQR 227 Query: 219 KFNSITTLI 227 F +I Sbjct: 228 SFEMYQKMI 236 >gi|304438314|ref|ZP_07398255.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368680|gb|EFM22364.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 266 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 11/224 (4%) Query: 19 LSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 L + D+ ++TD F+ +++ + +VG + + + +A+ +++ G+ +TG Sbjct: 49 LRRINDHAADTDVTSFKGFRIRSGAAIVGTLG--LGSAVDEIAT--DHIQ---GALQTTG 101 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 DF + G +F +++P+G TRDG F + G L + G+ VL PI IP Sbjct: 102 NTYDFGISGQGYFIIDTPQGQRYTRDGSFYRSSTGQLQNVRGQ-AVLSPQGQPITIPADA 160 Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 V G I G+ IA +G D + ++ ++ P P + +GV +++G Sbjct: 161 RNVTVSSDGRIYANGRQIAQLGFVQFDEEKAVIKEGDNLYKPQ-PGAQPQQATGV-IEQG 218 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 LE SN + + EM ++I+ + + + + + + + +A+ ++ Sbjct: 219 MLEMSNTSVVTEMVELINNYRVYEAGSKAVQTQDALLDKAVNDV 262 >gi|319790435|ref|YP_004152068.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] gi|317114937|gb|ADU97427.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] Length = 238 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 11/220 (5%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF-RTIKVKFSEVVGAIKNDIDQKISFVA 60 QT + + + ALEQ L T +N++N +T GF R I+ + S+ V +D + F Sbjct: 6 QTIYLLAAGGERALEQ-LDTTTNNLANVNTPGFKRIIEEEMSQHVPPNGSDAYNMLIFPR 64 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G T + D AL+G +FA+++P G + TR+G F + +G LV A+G Sbjct: 65 FKSTQVVLSEGPLRKTDSPFDLALKGRGFFAVKTPNGELYTRNGHFTLNANGVLVDANGN 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVLD++ I + ++ V G + + + + + + + G+ Sbjct: 125 -PVLDISGKEIALSGNGKV-TVTPDGLVFEGDRQVGVLKIVDFAKVKPVGNSYYQGVG-- 180 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 PT + V +GFLE SN N + EM +I ++F Sbjct: 181 -APTATD----AEVLQGFLEGSNVNPVKEMVNLIEAQRRF 215 >gi|239995124|ref|ZP_04715648.1| flagellar basal-body rod protein FlgF [Alteromonas macleodii ATCC 27126] Length = 247 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 27/225 (12%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N T GFR +++ + + A + ++ F + + E G I T +LD Sbjct: 23 ANNLANAQTTGFRA-QLEQARSMPAYGEGLPTRV-FSMTESPSNNYESGPMIKTDRDLDV 80 Query: 83 ALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A++GD WFA++ G +RDG FK+ DDG L + + D + PI +P + N Sbjct: 81 AIQGDGWFAVQDQNGQEAYSRDGNFKLGDDGILTDIHDRVVLGD--NGPIFLPVPLDNLN 138 Query: 142 VGEKGEISQK-----GKVIATMGLYSV------DMSQ---GFVRRENSGISPNIPPTPLE 187 + G +S + VI +G + DM + G R E+ I+P Sbjct: 139 IAADGTLSMRQLGAPANVIEEVGRLKLVSPNYADMERGNDGLFRMEDGSIAPAN------ 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + V V G LE SN N++ EM MI L + + ++ + E+ Sbjct: 193 --ANVKVMSGMLEGSNVNAVDEMVDMISLQRHYELQVKMMKQAEE 235 >gi|85859196|ref|YP_461398.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] gi|85722287|gb|ABC77230.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] Length = 260 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 121/262 (46%), Gaps = 43/262 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G+ AQ +EQ + VA+N++N +TVGF+ + F +++ + N + I Sbjct: 11 GMQAQ-QVEQDV--VANNLANVNTVGFKKSRADFQDLMYQLSTKAGSETSSGNQLTVGIE 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 K ++++ G + TG D+A+EGD +F L+ + TR G FKV DG L Sbjct: 68 IGMGVKPVATQKIFSQGDYQQTGNSFDWAIEGDGFFQLDDNGTTVYTRAGNFKVNRDGVL 127 Query: 115 VSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---QKGKVIAT-----------MG 159 + G + +P + IPQ F + G + + G +AT G Sbjct: 128 CNTDG------LQLIPEVSIPQDAVTFTLDSGGTWTAADENGNTLATGRIELAKFINPAG 181 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI--HLT 217 L S+ + F + E SG P + P ED G T +R FLE SN N + EM +MI Sbjct: 182 LSSIGRNL-FEKTEGSG-EP-LTGNPGEDGLGTTSQR-FLEMSNVNVIDEMVKMIVGQRA 237 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + NS + + +N SM+ ++ Sbjct: 238 YEINSKSIVTADNMLSMINNLK 259 >gi|15642195|ref|NP_231827.1| flagellar basal body rod protein FlgF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586260|ref|ZP_01676050.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 2740-80] gi|121726526|ref|ZP_01679775.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V52] gi|147673274|ref|YP_001217713.1| flagellar basal body rod protein FlgF [Vibrio cholerae O395] gi|153213604|ref|ZP_01948877.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 1587] gi|153817120|ref|ZP_01969787.1| flagellar basal-body rod protein FlgF [Vibrio cholerae NCTC 8457] gi|153820819|ref|ZP_01973486.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33] gi|153825314|ref|ZP_01977981.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-2] gi|153829346|ref|ZP_01982013.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 623-39] gi|183179566|ref|ZP_02957777.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-3] gi|227082320|ref|YP_002810871.1| flagellar basal-body rod protein FlgF [Vibrio cholerae M66-2] gi|229507727|ref|ZP_04397232.1| flagellar basal-body rod protein FlgF [Vibrio cholerae BX 330286] gi|229512078|ref|ZP_04401557.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33] gi|229513840|ref|ZP_04403302.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TMA 21] gi|229519214|ref|ZP_04408657.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC9] gi|229522145|ref|ZP_04411562.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TM 11079-80] gi|229524191|ref|ZP_04413596.1| flagellar basal-body rod protein FlgF [Vibrio cholerae bv. albensis VL426] gi|229528799|ref|ZP_04418189.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 12129(1)] gi|229607231|ref|YP_002877879.1| flagellar basal body rod protein FlgF [Vibrio cholerae MJ-1236] gi|254225802|ref|ZP_04919407.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V51] gi|254849325|ref|ZP_05238675.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MO10] gi|255747105|ref|ZP_05421050.1| flagellar basal-body rod protein FlgF [Vibrio cholera CIRS 101] gi|262161351|ref|ZP_06030461.1| flagellar basal-body rod protein FlgF [Vibrio cholerae INDRE 91/1] gi|262167778|ref|ZP_06035480.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC27] gi|262191688|ref|ZP_06049864.1| flagellar basal-body rod protein FlgF [Vibrio cholerae CT 5369-93] gi|297580842|ref|ZP_06942767.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC385] gi|298500426|ref|ZP_07010231.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MAK 757] gi|9656752|gb|AAF95341.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549526|gb|EAX59552.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 2740-80] gi|121630979|gb|EAX63358.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V52] gi|124115803|gb|EAY34623.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 1587] gi|125621708|gb|EAZ50037.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V51] gi|126512388|gb|EAZ74982.1| flagellar basal-body rod protein FlgF [Vibrio cholerae NCTC 8457] gi|126521611|gb|EAZ78834.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33] gi|146315157|gb|ABQ19696.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O395] gi|148875187|gb|EDL73322.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 623-39] gi|149740998|gb|EDM55067.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-2] gi|183012977|gb|EDT88277.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-3] gi|227010208|gb|ACP06420.1| flagellar basal-body rod protein FlgF [Vibrio cholerae M66-2] gi|227014092|gb|ACP10302.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O395] gi|229332573|gb|EEN98059.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 12129(1)] gi|229337772|gb|EEO02789.1| flagellar basal-body rod protein FlgF [Vibrio cholerae bv. albensis VL426] gi|229341070|gb|EEO06075.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TM 11079-80] gi|229343903|gb|EEO08878.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC9] gi|229349021|gb|EEO13978.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TMA 21] gi|229352043|gb|EEO16984.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33] gi|229355232|gb|EEO20153.1| flagellar basal-body rod protein FlgF [Vibrio cholerae BX 330286] gi|229369886|gb|ACQ60309.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MJ-1236] gi|254845030|gb|EET23444.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MO10] gi|255735507|gb|EET90907.1| flagellar basal-body rod protein FlgF [Vibrio cholera CIRS 101] gi|262023843|gb|EEY42542.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC27] gi|262028662|gb|EEY47316.1| flagellar basal-body rod protein FlgF [Vibrio cholerae INDRE 91/1] gi|262032427|gb|EEY50989.1| flagellar basal-body rod protein FlgF [Vibrio cholerae CT 5369-93] gi|297534668|gb|EFH73504.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC385] gi|297541119|gb|EFH77173.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MAK 757] gi|327484715|gb|AEA79122.1| Flagellar basal-body rod protein FlgF [Vibrio cholerae LMA3894-4] Length = 249 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 35/224 (15%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q + A+N++N T GFR D+ Q S A G+ S+ Sbjct: 17 QAMQLRANNLANVSTTGFRA--------------DLAQARSMQAYGEGLPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 GS I+TG +LD ++GD W ++ G LTR+G ++ + G L++ +G +PV Sbjct: 63 GHNFAQGSVITTGRDLDITIQGDGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNG-HPV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-------SQGFVRRENSG 176 L PI +P +G G IS + + + VD Q + N Sbjct: 122 LGETGAPITLPVPLNKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRLNDQSLFKDVNGL 181 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P T E + V + G LE SN N++ EM +I L ++F Sbjct: 182 FRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQF 225 >gi|238028848|ref|YP_002913079.1| flagellar basal body rod protein FlgF [Burkholderia glumae BGR1] gi|37360907|dbj|BAC98361.1| flagellar basal-body rod protein [Burkholderia glumae] gi|237878042|gb|ACR30375.1| Flagellar basal-body rod protein [Burkholderia glumae BGR1] Length = 250 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 18/236 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---VGAIKNDIDQKISFVASGKEYLS 67 A AL+Q+ S +A+N++NT T GFR + V G N D +FV S Sbjct: 12 ADQALDQQ-SVIANNLANTSTTGFRAQLATYRAVPMNFGEASNP-DTTRTFVLSSTPGAD 69 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDM 126 G TG LD A++G W + +P G TR G V ++G LV+AS PV+ Sbjct: 70 YSAGPIARTGNPLDVAVQGKGWLTVLAPDGSEGYTRAGNLHVDENGQLVNAS-NLPVVGT 128 Query: 127 ASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGISPN 180 PI +P ++ +G G +S IA + L V+ ++R + G+ Sbjct: 129 GG-PISVPPNGQV-TIGSDGTVSVLAAGDPPSAIAMVDQLKLVNPEPASMKRGDDGLFRT 186 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P E V + LE SN N + M M+ + F T LI D+NE++ Sbjct: 187 TDGNPAEVDPSVVLAPSSLEGSNVNPVSAMVSMLDNARAFQLHTKLIETADQNEQN 242 >gi|326796596|ref|YP_004314416.1| flagellar basal-body rod protein FlgF [Marinomonas mediterranea MMB-1] gi|326547360|gb|ADZ92580.1| flagellar basal-body rod protein FlgF [Marinomonas mediterranea MMB-1] Length = 245 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 36/217 (16%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EV 70 A+N++N T GFR D +Q S +G Y S+ E Sbjct: 23 ANNLANVATTGFRA--------------DFEQARSMQVNGDYYPSRVYAMTENPGTRMER 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G I TG ++D A++GD + A G + TR G ++T G LV+ +G PVL A Sbjct: 69 GVMIETGRDMDVAIQGDGFIAAMDATGQEVYTRAGDLQLTSAGQLVTGTG-LPVLGSAG- 126 Query: 130 PIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSVDM--SQG-FVRRENSGISPNIPP 183 P+ +P D + +VG G IS Q G T + + + + G + + N G+ Sbjct: 127 PVFLPPLDAL-HVGSDGTISFIPQGGDATQTTSIGRIKLVNTDGENLTKGNDGLLRTKNG 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 PL++ + + + GFLE SN N++ EM +++ L ++F Sbjct: 186 LPLDEDNNIKLISGFLEGSNVNAVEEMTEIMELARRF 222 >gi|90579910|ref|ZP_01235718.1| putative flagellar basal-body rod protein FlgF [Vibrio angustum S14] gi|90438795|gb|EAS63978.1| putative flagellar basal-body rod protein FlgF [Vibrio angustum S14] Length = 249 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 39/232 (16%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EV 70 A+N++N T GFR D+ Q S A G+ S+ Sbjct: 23 ANNLANVSTTGFRA--------------DLQQARSMQAYGEGLPSRVFSMAERPGNDFAQ 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 GS I+TG +LD A+EGD W A+ +G TR G K+ G L +++G+ VL Sbjct: 69 GSVINTGRDLDVAVEGDGWLAVMDVKGQEAYTRAGHLKIDQTGMLQNSNGQL-VLGQNDS 127 Query: 130 PIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 PI IP +G+ G +S V+ + L D F ++ G+ +I Sbjct: 128 PIFIPLPISKIEIGKDGTVSVLPQGAPPDAMAVVDRIKLVKPDNQALF--KDTDGLFKSI 185 Query: 182 -PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 PL+ + VT+ +G LE SN N++ EM MI L + F L+ E+ Sbjct: 186 GERIPLDADASVTLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAEE 237 >gi|83647172|ref|YP_435607.1| flagellar basal body rod protein FlgF [Hahella chejuensis KCTC 2396] gi|83635215|gb|ABC31182.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 248 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 46/235 (19%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK- 68 A Q L QR A+N++N +T GF K+D Q S G+ Y S+ Sbjct: 12 AKQNMLSQR--GHANNLANANTTGF--------------KSDFMQARSMPVFGEHYPSRA 55 Query: 69 -----------EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVS 116 E+GS + TG +LD A+ G+ W A+++P G TR+G + +G L + Sbjct: 56 YAMTERPATDFEMGSLMQTGRDLDVAVAGNGWIAVQAPDGGEAYTREGELLLDVNGVLRT 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----------QKGKVIATMGLYSVDM 165 SG PVL PI +P ++ N+G G IS Q+ I + + D+ Sbjct: 116 GSG-LPVLGNGG-PIAVPPAAKL-NIGVDGTISIVPLGGNPDEIQEVDRIRLVNPPAEDL 172 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +G + + P++P L D V ++ G+LE SN N++ EM +++ L+++F Sbjct: 173 EKGVDGLIH--LKPDVPGPALPD-GLVRLESGYLESSNVNAVEEMTEILSLSRQF 224 >gi|89075496|ref|ZP_01161907.1| putative flagellar basal-body rod protein FlgF [Photobacterium sp. SKA34] gi|89048768|gb|EAR54339.1| putative flagellar basal-body rod protein FlgF [Photobacterium sp. SKA34] Length = 249 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 39/232 (16%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EV 70 A+N++N T GFR D+ Q S A G+ S+ Sbjct: 23 ANNLANVSTTGFRA--------------DLQQARSMQAYGEGLPSRVFSMAERPGNDFAQ 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 GS I+TG +LD A+EGD W A+ +G TR G K+ G L +++G+ VL Sbjct: 69 GSVINTGRDLDVAVEGDGWLAVMDVKGQEAYTRAGHLKIDQTGMLQNSNGQL-VLGQNDS 127 Query: 130 PIQIPQKDEIFNVGEKGEIS--QKG------KVIATMGLYSVDMSQGFVRRENSGISPNI 181 PI IP +G+ G +S +G V+ + L D F ++ G+ +I Sbjct: 128 PIFIPLPISKIEIGKDGTVSVLPQGAPPDAIAVVDRIKLVKPDNQALF--KDTDGLFKSI 185 Query: 182 -PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 PL+ + VT+ +G LE SN N++ EM MI L + F L+ E+ Sbjct: 186 GERIPLDADASVTLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAEE 237 >gi|294339841|emb|CAZ88204.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Thiomonas sp. 3As] Length = 261 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 39/256 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKE 64 A + R+ +A+N++N +T GF+ + F +++ GA + Q S + +G Sbjct: 14 AEQTRMDVIANNLANVNTSGFKGSRAVFQDLLYQNLTQPGAQSSQSTQYPSGLQLGTGVR 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 +S E G+ TG LD A+ G +F + P G I TRDG F++ + G LV+A+G Sbjct: 74 PVSTERLMTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRDGTFQLNNQGQLVTANG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVD 164 + + IP + +G G +S Q + GL S+ Sbjct: 134 Y-----LVQPTVTIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLASFVNPTGLQSIG 188 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + +++ +SG +PN L L +V++G+LE SN N + E+ MI TQ+ + Sbjct: 189 DNL-YLQTGSSG-APNTGQPTLNGLG--SVRQGYLESSNVNVVAELVDMIS-TQRAYEVN 243 Query: 225 TLIDENEKSMLEAIRN 240 + ML+ + N Sbjct: 244 SKAVTASDQMLQYVNN 259 >gi|56551505|ref|YP_162344.1| flagellar basal body rod protein FlgG [Zymomonas mobilis subsp. mobilis ZM4] gi|241761149|ref|ZP_04759238.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752888|ref|YP_003225781.1| flagellar basal body rod protein FlgG [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|4378856|gb|AAD19724.1| flagellar basal-body rod protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543079|gb|AAV89233.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ZM4] gi|241374768|gb|EER64229.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552251|gb|ACV75197.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 263 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 42/260 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ R+ +A+N++N +T F+ + F + + + + Sbjct: 12 GLDAQ---NTRMRIIANNLANVNTTAFKRDRAAFETLAYQAERQPGAQSTNSYYYATGLT 68 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + ++ E GSF++TG LD A+ G +F ++ P G I TR G F+++ DG Sbjct: 69 LGSGVQTIATERQETQGSFVNTGNSLDLAVSGVGYFQIQLPDGTIGYTRAGNFQLSQDGQ 128 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATM 158 +V+ GK P++ I IPQ E +GE G +S Q G++ I Sbjct: 129 IVTDDGK-PLIPN----INIPQNAEQITIGEDGTVSVQLQGQTQSNQVGQIQTVRFINPA 183 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL + + ++ ++SG P I P +D G + +G LE SN N + E+ MI TQ Sbjct: 184 GLQATGQNL-YIETQSSG-QPQI-GLPQQDGMGY-ILQGELEQSNVNIVQELVDMIE-TQ 238 Query: 219 KFNSITTLIDENEKSMLEAI 238 + + + + + ML+ I Sbjct: 239 RAYEVNSKMVKASDEMLQYI 258 >gi|296135671|ref|YP_003642913.1| flagellar basal-body rod protein FlgG [Thiomonas intermedia K12] gi|295795793|gb|ADG30583.1| flagellar basal-body rod protein FlgG [Thiomonas intermedia K12] Length = 261 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 39/256 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKE 64 A + R+ +A+N++N +T GF+ + F +++ GA + Q S + +G Sbjct: 14 AEQTRMDVIANNLANVNTSGFKGSRAVFQDLLYQNLTQPGAQSSQSTQYPSGLQLGTGVR 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 +S E G+ TG LD A+ G +F + P G I TRDG F++ + G LV+A+G Sbjct: 74 PVSTERLMTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRDGTFQLNNQGQLVTANG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVD 164 + + IP + +G G +S Q + GL S+ Sbjct: 134 Y-----LVQPTVTIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQLASFVNPTGLQSIG 188 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + +++ +SG +PN L L +V++G+LE SN N + E+ MI TQ+ + Sbjct: 189 DNL-YLQTGSSG-APNTGQPTLNGLG--SVQQGYLESSNVNVVAELVDMIS-TQRAYEVN 243 Query: 225 TLIDENEKSMLEAIRN 240 + ML+ + N Sbjct: 244 SKAVTASDQMLQYVNN 259 >gi|329849713|ref|ZP_08264559.1| flagellar basal-body rod protein FlgF [Asticcacaulis biprosthecum C19] gi|328841624|gb|EGF91194.1| flagellar basal-body rod protein FlgF [Asticcacaulis biprosthecum C19] Length = 249 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 21/252 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M + I L+ QL L + L A+NM+N +T G++ ++ + GA + I +F Sbjct: 1 MDNASYIALSRQLTLRRELDISANNMANMNTNGYKFEQLLVHQEYGAPAYNAPIRTPANF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTRDGRFKVTDDGSLVSA 117 + G+F TG LDFA++GD +F +++ G TRDG F + +G L++ Sbjct: 61 AYDNEVGRDFSQGTFQITGAPLDFAIDGDGVFFTVQTADGEAYTRDGAFTMNAEGMLMTQ 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSV-DMSQGFVRR 172 G YPV+ PI + K V E G I+Q + + + + L + DMS +++ Sbjct: 121 DG-YPVVGDGG-PITMDPKKGQPAVSEDGIITQDYQGQAERVGKLNLVRITDMSD--LKK 176 Query: 173 ENSG---ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 +G ++ N P P D V++GFLE SN N M E+ ++I + + + ++ +I + Sbjct: 177 AGNGTYTLTSNATPVPATD---ARVRQGFLEASNVNPMIEVTKLIEINRAYTTLAGIIQQ 233 Query: 230 NE---KSMLEAI 238 KS +E + Sbjct: 234 QHDLNKSAVERL 245 >gi|323697472|ref|ZP_08109384.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. ND132] gi|323457404|gb|EGB13269.1| flagellar basal-body rod protein FlgG [Desulfovibrio desulfuricans ND132] Length = 260 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 122/267 (45%), Gaps = 35/267 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR------------TIKVKFSEVVGAI 48 M S +A++ ++ T+++N++N T F+ T+K+ E Sbjct: 1 MMRSLWTSATGMIAMQTQIDTLSNNLANVSTTAFKKSRAEFEDLMYQTLKIAGGENADGT 60 Query: 49 KNDIDQKISF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 + + +I S ++ ++ G F +TG LD A+EG+ +F + + TRDG Sbjct: 61 QTPVGMQIGMGVRPVSVHKFFTQ--GDFQNTGNPLDMAIEGEGFFQVMVNGDEVYTRDGS 118 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGL 160 F++ DG +V+A G YP+ +VP P+ I ++ E G IS + G V+AT + L Sbjct: 119 FELDSDGRVVTAGG-YPLQPEFTVP---PETSSI-SISETGTISALDKDGTVLATADIDL 173 Query: 161 YSVDMSQGFV------RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 Y G + RE+ + TP +D G T+ +GFLE SN + EM +I Sbjct: 174 YRFQNPAGLIATGRNFYRESDASGVAVAGTPGDDNYG-TIAQGFLEGSNVEMVDEMVGLI 232 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + Q+ I + ML+ NI Sbjct: 233 -VGQRAFEINSKAITTSDGMLQTAINI 258 >gi|90418392|ref|ZP_01226304.1| basal body rod protein flgG [Aurantimonas manganoxydans SI85-9A1] gi|90338064|gb|EAS51715.1| basal body rod protein flgG [Aurantimonas manganoxydans SI85-9A1] Length = 262 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 33/234 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE---- 69 A + + +A+N++N +T GF+ + +F++++ +++ A G + + E Sbjct: 13 AQQTNVEVIANNIANINTTGFKRARAEFTDLL----YQVERAQGVAARGGQGVVPEGAQL 68 Query: 70 --------------VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G+ TG +LD AL G+ WF ++ P G I+ TRDG F DG L Sbjct: 69 GLGTRLAAIRNLHIQGTLNQTGNKLDLALNGEGWFQVQGPGGEILYTRDGAFNTNGDGQL 128 Query: 115 VSASGKY--PVLDMAS--VPIQIPQKDEIF-NVGEKGEISQKGKV-IATMGLYSVDMSQG 168 V+ G P + M + + + + ++F VG ++ + G++ +AT + +QG Sbjct: 129 VTLDGLLVDPAITMPANTSEVIVNESGQVFARVGGAADLEELGQLTLATFANNAGLAAQG 188 Query: 169 F-VRRENSGISPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + RE I+ P + G T+++G+LEDSN + + E+ ++I + + Sbjct: 189 GNLFRET--IASGAPTAGVPGDEGYATLQQGYLEDSNVDPVKEISELISAQRAY 240 >gi|260767768|ref|ZP_05876703.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] gi|260617277|gb|EEX42461.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] gi|315179400|gb|ADT86314.1| flagellar basal body rod protein FlgF [Vibrio furnissii NCTC 11218] Length = 249 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 37/225 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q + A+N++N T GFR D++Q S A G S+ Sbjct: 17 QAMQLRANNLANVSTTGFRA--------------DLEQARSMQAYGDGLPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 + GS I+TG +LD ++GD W A+ G LTR+G + +G L++ +G +PV Sbjct: 63 GHNFQQGSVITTGRDLDVTVQGDGWIAVMDKTGKEGLTRNGNLNIDANGLLLNGNG-HPV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI-- 181 L PI +P +G G IS + + + VD + VR +N + ++ Sbjct: 122 LGETGAPITLPVPLAKVEIGNDGTISVRPQGAPADAMEVVDRIK-LVRLDNQSLFKDVNG 180 Query: 182 ------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P + + V + G +E SN N++ EM +I L ++F Sbjct: 181 LFRSKDPNAAYDANANVKILTGAVEGSNVNAVGEMTSLIDLQRQF 225 >gi|114320059|ref|YP_741742.1| flagellar basal-body rod protein FlgG [Alkalilimnicola ehrlichii MLHE-1] gi|114226453|gb|ABI56252.1| flagellar basal-body rod protein FlgG [Alkalilimnicola ehrlichii MLHE-1] Length = 261 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 112/263 (42%), Gaps = 44/263 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + R+ V++N++N +T GF+ + F +++ G D Sbjct: 11 GLDAQ---QTRMQVVSNNLANVNTTGFKKDRANFEDLIYQTVRQAGGQSTQDTLLPTGLN 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G S E G+ T LD A+EGD +F + P G I +RDG F V D G Sbjct: 68 LGTGVRVTSTEKIHMQGNIQQTENSLDIAIEGDGFFQILMPDGEIAYSRDGSFNVDDQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 +V++SG Y + PI IP +G G +S Q I Sbjct: 128 MVTSSG-YQL----QPPINIPDDAVSVTIGRDGTVSARLPGQADPQQLGNIQLADFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 GL D G + RE + P P L GV T+ +G LE SN N E+ MI Sbjct: 183 GL---DAMGGNLFRETAASGP--PQISDPGLDGVGTLLQGALESSNVNIAEELVNMIETQ 237 Query: 218 QKFNSITTLIDENEKSMLEAIRN 240 + F + T I ++ ML+ I N Sbjct: 238 RAFETNTKAISSTDQ-MLQFINN 259 >gi|90021853|ref|YP_527680.1| flagellar basal body rod protein FlgG [Saccharophagus degradans 2-40] gi|89951453|gb|ABD81468.1| Flagellar basal-body rod FlgG [Saccharophagus degradans 2-40] Length = 261 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 48/263 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GLAAQ + RL+T+A+N++N TVGF+ + F +++ I+ Sbjct: 11 GLAAQ---DTRLTTIANNLANASTVGFKRDRAVFEDLLYQIQRQPGAQTTEETQLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K++ GS TG LD A++G + + P G + TRDG+F + Sbjct: 68 LGTGVRVVGTQKQFTP---GSLQVTGQSLDVAIDGRGFIPVLQPDGTVSYTRDGQFHLDG 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 G +V+ASG + I IP E +G G +S Q + Sbjct: 125 QGQVVNASGL-----LIQPAITIPDNAETVTIGTDGVVSASVRGEPAPVVLGNLQIVDFV 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ + F+ +SG +P I TP E+ G ++K+G LE+SN + + EM MI Sbjct: 180 NPAGLQAIGGNL-FLETASSG-NP-IQGTPGENGLG-SIKQGMLENSNVDIVEEMVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAI 238 TQ+ + + + ML+ I Sbjct: 236 -TQRAYEMNSKVVSTSDQMLQFI 257 >gi|255021355|ref|ZP_05293403.1| Flagellar basal-body rod protein flgF [Acidithiobacillus caldus ATCC 51756] gi|254969218|gb|EET26732.1| Flagellar basal-body rod protein flgF [Acidithiobacillus caldus ATCC 51756] Length = 246 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + A+ E G + TG LD A+ G W A+++P G TRDG +V G LV+ Sbjct: 55 YTATTGESWDFRSGPIVRTGRALDVAVNGPGWMAVQAPDGKEAYTRDGNLQVNGQGLLVT 114 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFV 170 A+G +PVL + PI +P + +G G IS ++A + V+ + Sbjct: 115 ATG-HPVLGVNGTPISLPPMSHL-TIGADGVISGIPAGNLPDGLMAINQIKLVNPPANQL 172 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 R+ + G+ N+ + V ++ G LE SN N ++ M QM+ +++F T L+ Sbjct: 173 RQSSDGLFVNVDGKAAPEDGKVVLESGALEGSNVNPIHAMVQMLQDSRQFEMQTKLM 229 >gi|90415316|ref|ZP_01223250.1| flagellar basal-body rod protein FlgG (distal rod protein) [marine gamma proteobacterium HTCC2207] gi|90332639|gb|EAS47809.1| flagellar basal-body rod protein FlgG (distal rod protein) [marine gamma proteobacterium HTCC2207] Length = 261 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + R+S +++N++N +T GF+ + F +++ G + + + Sbjct: 11 GLTAQ---QTRMSVISNNLANVNTTGFKKDRAVFEDLLYQNIVPAGGQVDAESETPTGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ I+T LD A+ GD +F+++ G I +RDG FK++ +G+ Sbjct: 68 LGTGTRVVATEKLHAQGNIITTENALDLAISGDGYFSVQQADGTIAYSRDGSFKLSAEGN 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR- 172 LV+A G+ + I +PQ +G G ++ V + G S + Q + R Sbjct: 128 LVTAGGQTLL-----PAITVPQNAASLTIGRDGVVT----VELSNGGGSSQIGQLQLSRF 178 Query: 173 -ENSGISP---------NIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQ 218 NSG+ P N PL L G + +G LE SN N + EM MI + Sbjct: 179 VNNSGLQPIGRNLMQQTNASGDPLVVLPGADGAGMLMQGALEASNVNVVEEMVNMIETQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|78358198|ref|YP_389647.1| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220603|gb|ABB39952.1| Flagellar basal body rod protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 261 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 40/243 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDID 53 M S +A + + T+++N++N +T+GF+ + +F + + G++ + D Sbjct: 1 MMRSLWTAATGMIAQQLNIDTISNNLANVNTLGFKKSRAEFEDLMYQNMKIAGSVTGN-D 59 Query: 54 QKISF---VASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 Q+I V G ++ ++ G + +TG LD A+EGD +F + TR G Sbjct: 60 QRIPTGIQVGLGVRPTTVHKFFTQ--GDYSNTGNPLDLAIEGDGFFQVTVNGEPAYTRAG 117 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMG 159 FK+ DG++V+A+G YP+ +VP P+ + V E G I+ K A + Sbjct: 118 AFKLNQDGTVVTANG-YPLEPEFTVP---PETKNVV-VTENGHIAALDKNGEELAAADIP 172 Query: 160 LYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 LY+ G ++ E SG++ + P ED G T+ +GFLE SN + EM Sbjct: 173 LYTFINPAGLQAAGRNLYLASEASGVA--VEGVPGEDNVG-TIAQGFLEMSNVEVVDEMV 229 Query: 212 QMI 214 MI Sbjct: 230 NMI 232 >gi|205375362|ref|ZP_03228152.1| flagellar basal-body rod protein [Bacillus coahuilensis m4-4] Length = 270 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 121/262 (46%), Gaps = 38/262 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV------GAIKNDIDQKISFVASGK 63 +A +++ T+A+N++N +T GF+ + F E++ G + N I + S + Sbjct: 13 IAQQRKTETLANNLANANTPGFKADQTSVRSFPEMLLMSVGQGTLPNQQRSTIPQLNSLQ 72 Query: 64 EYLSKEV-----------GSFISTGTELDFALE-------GDAWFALESPRGIILTRDGR 105 +S V G TG + D L G + ++ G+ TR+G Sbjct: 73 TSISTGVYVQELTPLLSQGDLFETGMKTDIGLYDINVPQGGTVLYTVQGENGVSYTRNGN 132 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL-YSVD 164 + +GSLV+++G Y VLD I + +D F V ++GEI Q G+ +A +G+ Y+ D Sbjct: 133 LTLDGNGSLVTSNGYY-VLDTNGNTITLGNED--FTVNDQGEIIQNGQGVAKLGVAYAAD 189 Query: 165 MSQ----GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S G E+ G N +E L TV+ GFLE+SN N M M+ + F Sbjct: 190 ASTLRKIGTDLYESDGQLQN--AYNVEGLQFQTVQ-GFLENSNVNESQTMTDMMTAYRSF 246 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 + L+ +KS+ +A+ I Sbjct: 247 EANQKLLQAYDKSLDKAVNEIG 268 >gi|171059411|ref|YP_001791760.1| flagellar basal-body rod protein FlgF [Leptothrix cholodnii SP-6] gi|170776856|gb|ACB34995.1| flagellar basal-body rod protein FlgF [Leptothrix cholodnii SP-6] Length = 241 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 22/234 (9%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR T+A+N++N TVGFR F V ++ D ++ + G+ Sbjct: 14 ATMQRQETLANNLANVSTVGFRAEMQAFRAV--PVRGDGATTRAYALETTTGYNPAQGNI 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 +TG LD A++G+ W A++S G TR G V DG LV ++G PVL PI Sbjct: 72 TATGRNLDVAMQGNGWLAVQSLDGTEAYTRAGALNVMPDGLLVGSNG-LPVLGDGG-PIT 129 Query: 133 IPQKDEIFNVGEKGEISQKGK--VIATMGLYSVDMSQGFVRRENSGI----SPNIPPTPL 186 +P E+ G+ G IS + I +G + + ++R + G+ ++P P Sbjct: 130 LPANAEVQIAGD-GTISARAANGGITPVGKLKLVTPEAPLKRGDDGLFRAADGDLPADP- 187 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS-----ITTLIDENEKSML 235 ++ G LE SN +++ M MI ++F TT DE + + L Sbjct: 188 ----NARLQDGALEGSNVSAIETMVAMISAARQFEQQMKSMQTTEQDEKQAAQL 237 >gi|190574262|ref|YP_001972107.1| flagellar basal body rod protein FlgF [Stenotrophomonas maltophilia K279a] gi|190012184|emb|CAQ45807.1| putative flagellar basal-body rod protein [Stenotrophomonas maltophilia K279a] Length = 249 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 112/260 (43%), Gaps = 35/260 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR-------TIKVK---FSEVVGAIKN 50 M + + + A Q T++ N++N+DT GF+ +K F+ V A+ Sbjct: 1 MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAFPIKGPGFASRVDALHV 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 D ++ GS TG LD +L+ W A++S G TR VT Sbjct: 61 DAG------------FNRTPGSQHITGKPLDLSLQTGTWLAVQSSDGSEAYTRGAALSVT 108 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG----LYSV 163 +G LV++SG+ PVLD + PI IP + +G G IS +G+ TM + V Sbjct: 109 PNGQLVTSSGR-PVLDDNNNPIAIPPY-QAMEIGADGTISIIPQGEGPQTMAQIGRIKVV 166 Query: 164 DMSQGFVRRENSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + R G+ N P P G V G LE SN ++ + QMI L +++ Sbjct: 167 QAPDERLERGLDGLFRNTDPRQPFAPAQGTAVHSGQLEGSNVDAAGALVQMIQLQRQYEM 226 Query: 223 ITTLI---DENEKSMLEAIR 239 +I DEN +S +R Sbjct: 227 QVQVIKHGDENARSANSMLR 246 >gi|54294164|ref|YP_126579.1| flagellar basal body rod protein FlgF [Legionella pneumophila str. Lens] gi|53753996|emb|CAH15467.1| flagellar biosynthesis protein FlgF [Legionella pneumophila str. Lens] Length = 248 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 32/243 (13%) Query: 17 QRLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 +R +A+N++N +T GF+ + + + A N+ SF+ + G I Sbjct: 17 KRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSFITQNANGVDTSPGEII 76 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG +LD A++GD W A++ +G TR G ++ +G L++ASGK + D PI I Sbjct: 77 TTGRDLDVAIDGDGWIAVQDSQGREAYTRGGSLRLNPNGQLITASGKVVLGDGG--PISI 134 Query: 134 PQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMS------QGFVRRENSGISP 179 P I +G G IS + ++ + L ++D + +G ++ ++ Sbjct: 135 PPAQSI-EIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNNIYKNDEGLIQLKSGAAIA 193 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLE 236 N S + ++ G LE SN N++ +M MI ++F++ + + +D+N + + + Sbjct: 194 N---------SNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQKLAQ 244 Query: 237 AIR 239 ++ Sbjct: 245 LLQ 247 >gi|291280520|ref|YP_003497355.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] gi|290755222|dbj|BAI81599.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] Length = 262 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 115/256 (44%), Gaps = 45/256 (17%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF-VASGKEYLSK 68 + +++N++N +T GF+ +V F +++ G I+ + G + +S Sbjct: 18 NIDNISNNLANVNTAGFKKSRVNFEDLLYQELKPAGGVTAAGINHPTGIQIGLGSKVVST 77 Query: 69 E----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 E G+F TG LD A+EGD +F + P G I TR+G FKV DG+LV+A G Sbjct: 78 EKIFSQGNFQQTGNPLDIAIEGDGFFQVTLPDGTIGYTRNGSFKVDADGNLVTAEGY--- 134 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVDMSQG 168 + I IP VGE G +S + K I GL S+ + Sbjct: 135 --LLEPNIAIPDNALEIIVGEDGTLSVTLPGEAEPTELGQIELAKFINPSGLRSIGKNI- 191 Query: 169 FVRRENSGISPNIPPT---PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 +++ SG PT P ED G T+ +G LE SN N + EM +I Q+ I + Sbjct: 192 YLQTAASG-----EPTTGIPGEDGFG-TLAQGILEMSNVNVVEEMVNLIT-GQRAYEINS 244 Query: 226 LIDENEKSMLEAIRNI 241 + ML+ + N+ Sbjct: 245 KAIQTGDEMLQIVNNL 260 >gi|89068730|ref|ZP_01156116.1| flagellar basal-body rod protein FlgF [Oceanicola granulosus HTCC2516] gi|89045693|gb|EAR51755.1| flagellar basal-body rod protein FlgF [Oceanicola granulosus HTCC2516] Length = 248 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 16/251 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S I L+ +++ + A+NM+N +T GF+ ++ F + + +FV Sbjct: 1 MENSNYIALSLATVMQRSIDVAANNMANANTAGFKGERILFDSYLSPGDAGEENGATFVL 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ G +TG LD AL+G WF+ ++ G RDGRF V G+LV+ +G Sbjct: 61 DRGSFMDDSQGPVRNTGNVLDVALQGPGWFSYQTQDGQQAFGRDGRFAVDAQGNLVTQAG 120 Query: 120 KYPVLDMASVPIQIPQKDEI--FNVGEKGEISQKGK-VIATMGLYSVDMSQGFVRRENSG 176 VLD PI +P D + + + G +S + +G++ V + + R G Sbjct: 121 AR-VLDAGGQPIALP-PDAVAELVIADDGTLSSPATGALGRLGVFDVPDLKSYTR---IG 175 Query: 177 ISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + P PL DL+ V +G LE SN + EM +M+ + + + T L+ Sbjct: 176 AGMFVAPAEADVAAPLPDLA-TKVVQGALEGSNVQPIVEMTRMMAIQKSYEQATKLMGTG 234 Query: 231 EKSMLEAIRNI 241 ++ +A+R + Sbjct: 235 DELRKDALRRL 245 >gi|194365679|ref|YP_002028289.1| flagellar basal body rod protein FlgF [Stenotrophomonas maltophilia R551-3] gi|194348483|gb|ACF51606.1| flagellar basal-body rod protein FlgF [Stenotrophomonas maltophilia R551-3] Length = 249 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 110/260 (42%), Gaps = 35/260 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK----------FSEVVGAIKN 50 M + + + A Q T++ N++N+DT GF+ F+ V A+ Sbjct: 1 MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAFPIRGPGFASRVDALHV 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 D ++ GS TG LD +L+ W A++S G TR VT Sbjct: 61 DAG------------FNRTPGSQHITGKPLDLSLQTGTWLAVQSSDGSEAYTRGAALSVT 108 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG----LYSV 163 +G LV++SG+ PVLD + PI IP + +G G IS +G+ TM + V Sbjct: 109 PNGQLVTSSGR-PVLDDNNNPIAIPPY-QAMEIGADGTISIIPQGEGPQTMAQIGRIKVV 166 Query: 164 DMSQGFVRRENSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + R G+ N P P G V G LE SN ++ + QMI L +++ Sbjct: 167 QAPDERLERGLDGLFRNTDPLQPFAPAQGTAVHSGQLEGSNVDAAGALVQMIQLQRQYEM 226 Query: 223 ITTLI---DENEKSMLEAIR 239 +I DEN +S +R Sbjct: 227 QVQVIKHGDENARSANSMLR 246 >gi|182412222|ref|YP_001817288.1| hypothetical protein Oter_0398 [Opitutus terrae PB90-1] gi|177839436|gb|ACB73688.1| protein of unknown function DUF1078 [Opitutus terrae PB90-1] Length = 249 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 122/248 (49%), Gaps = 23/248 (9%) Query: 6 NIGL---AAQL-ALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIKNDIDQKISFVA 60 NIGL A+ L ALE+ TVA N++++ G+R + FS + G +++D + + A Sbjct: 2 NIGLYQSASSLSALERWQETVAQNITSSQVTGYRKRTINFSTQPAGELQSDPRRPVGSEA 61 Query: 61 SGKEYLSKEVGS---FIS-----TGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 G L +V S F+S T + D A++GD +F + P G TR+G F V D Sbjct: 62 -GVPTLFPKVNSGINFVSGETQPTRRDFDVAIQGDGFFQVRRPDGSFAYTRNGEFHVRAD 120 Query: 112 GSLVSASGKYPVLDMASVPIQ-IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 +LV+ +G VL+ PI +P D++ + G I Q +A M + + + Sbjct: 121 RTLVTGTGDE-VLNAGGGPITFLPNGDQV-AINTDGSIFQGETPVANMSVQRFADNAQLI 178 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS----ITTL 226 N P P E ++ + +G+LE+SN + EM ++ +++ + + ITTL Sbjct: 179 PMPNGYFVPAAGMAP-EAVTQPELLQGYLENSNVTPLREMVDLVIISRAYEANQRMITTL 237 Query: 227 IDENEKSM 234 + +K++ Sbjct: 238 DQQMQKAL 245 >gi|328948268|ref|YP_004365605.1| flagellar basal-body rod protein FlgF [Treponema succinifaciens DSM 2489] gi|328448592|gb|AEB14308.1| flagellar basal-body rod protein FlgF [Treponema succinifaciens DSM 2489] Length = 266 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 39/267 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV-------GAIKN 50 M + IG + A + RL T+++N++N DT GF+ + +FSE++ G K Sbjct: 1 MIRGWYIGASGMNAQQNRLDTISNNLANVDTTGFKKEIPVNKEFSELLLRRTVADGVYKT 60 Query: 51 -----DIDQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 D I + G E Y GSF ST T+ D AL G+ +F +++P G T Sbjct: 61 PFGSADAVSIIGSIGLGVETNELYTDFSQGSFKSTDTKTDMALGGEGFFTVQTPAGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP------QKDEIFNVGEKGEISQKGKVI 155 R+G F + +G L++ G YPVL + I +P +D + E E+ + KV+ Sbjct: 121 RNGNFHLGKEGILLTKEG-YPVLG-ENGAIHVPNDKFFVNQDGMIYTNEDNELVDRIKVV 178 Query: 156 ATMGLYSVDMSQGFVRRENSGI--SPNIPPTPL--EDLSGVTVKRGFLEDSNANSMYEMG 211 ++ F++++ S + S I E + +G+ E SN N + EM Sbjct: 179 RF-------ENERFLKKQGSSLWNSNEISGDAYIAEGDERPRLLQGYTEASNVNVVNEMV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 QMI + + + + + + E SM++ + Sbjct: 232 QMIEVNRAYEANQKSV-QTEDSMMDTL 257 >gi|222834411|gb|EEE72888.1| predicted protein [Populus trichocarpa] Length = 280 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 18/218 (8%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 L L+Q+ + V++N++N T F+ +V V + + Q +F + + G Sbjct: 47 LILDQQ-AAVSNNLANASTTAFKA-QVNMYRAVPVVGQET-QTRAFTLASTPGADMKAGP 103 Query: 73 FISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPI 131 TG LD AL+G+ W A++ P G TR G +V+ DG L ++ G PV+ PI Sbjct: 104 LSYTGRNLDVALQGNGWLAVQMPDGSEAYTRAGSLQVSPDGQLQTSLG-LPVMGDGG-PI 161 Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-------SQGFVRRENS--GISPNIP 182 IP + ++G G ++ +G A GL V +G R ++ + P + Sbjct: 162 GIPPGSTV-SIGTDGTVTARGPGEAANGLAQVGKLRVVTPPPEGLARGDDGYFRLRPGV- 219 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 PL+ V V G LE SN N + M +MI ++F Sbjct: 220 -DPLQQDPNVRVISGALEGSNVNPVESMVEMIANARRF 256 >gi|182418329|ref|ZP_02949624.1| flagellar hook protein FlgE [Clostridium butyricum 5521] gi|237666973|ref|ZP_04526958.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377711|gb|EDT75255.1| flagellar hook protein FlgE [Clostridium butyricum 5521] gi|237658172|gb|EEP55727.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 255 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 120/249 (48%), Gaps = 47/249 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F G + A ++++ +++++ N+ T G++ + F ++ + +D+K + + Sbjct: 1 MFNVFATGKSGMTAYQEKMDYLSNDLVNSTTTGYKGTDIGFKDL---MTESLDRKGNPIV 57 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 + G Y + + G+ ++TG + D A++G +FAL+ P G I TRDG FK+ Sbjct: 58 NKNAVNGTGVRIGTNYANNKQGNLLNTGLKTDLAIDGKGYFALQDPDGTISYTRDGNFKI 117 Query: 109 TDDGSLVSASG-----KY--------PVLDMASVPIQIPQKDEIFNVGEKG---EISQKG 152 +GSLV+ASG +Y P D ++ I G+ G I Sbjct: 118 DSNGSLVTASGVKVYVQYEPGFSEGDPAFDSDNIAID----------GQGGISMNIDGNV 167 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISP--NIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 ++ ++ +++ +GFV + N+ P + T +D +++GFLE SN ++ E+ Sbjct: 168 ALVGSIPVFTAIGDKGFVPKGNNMFVPSDDAQITLSDDYD---IRQGFLEASNVDAA-EV 223 Query: 211 GQMIHLTQK 219 + LTQ+ Sbjct: 224 FSDVILTQR 232 >gi|329901231|ref|ZP_08272756.1| Flagellar basal-body rod protein flgF [Oxalobacteraceae bacterium IMCC9480] gi|327549163|gb|EGF33755.1| Flagellar basal-body rod protein flgF [Oxalobacteraceae bacterium IMCC9480] Length = 245 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 13/239 (5%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ +EQ+ ST A+N++N T GFR F V ++ +FV Sbjct: 12 AKHVMEQQ-STTANNLANATTTGFRAQLDTFRAV--PVQGPGLATRAFVVDSTVGADFSQ 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ TG LD A++G W A++ P G TR G KV ++G L + G V D S Sbjct: 69 GALQQTGRALDVAIQGKGWLAVDMPDGTEAYTRHGSLKVNENGLLQTQGGLNIVGD--SG 126 Query: 130 PIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 PI IP D +G+ G + S+ G+ + + V+ + + R + + P Sbjct: 127 PITIP-PDVNVTIGKDGTVSSVESGSKPGQAVIIGRIKLVNPPEETMTRGDDTLFRVKTP 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +E VT+ G LE SN N + M MI L+++F +L+ E + +A + +A Sbjct: 186 GGVEADPNVTLAEGALESSNVNVVDAMVNMISLSRQFEMHMSLLKNAETNSTKAAQILA 244 >gi|296135672|ref|YP_003642914.1| flagellar basal-body rod protein FlgF [Thiomonas intermedia K12] gi|295795794|gb|ADG30584.1| flagellar basal-body rod protein FlgF [Thiomonas intermedia K12] Length = 245 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 18/247 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T + A+ L Q+ T +N++N +T G+R + +F + N + Sbjct: 1 MDTLWIAATGARAVLRQQAVTT-NNLANVNTTGYRGEQAQF-RALPVYGNALPTSAYTTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G +E G TG LD A+ G W A+++P G TR+G +V+ G L ++ G Sbjct: 59 QGNSANLQE-GPINHTGRNLDVAIRGSGWIAVQAPNGDTAYTRNGDLQVSASGILSTSDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVRRE 173 + PVL + PI +P + + +G G I SQ ++ + V+ ++R Sbjct: 118 R-PVLGQSGAPISVPPLESV-QIGADGTISGVPVGSQPNALVVINRIQLVNPPPAQMQRG 175 Query: 174 NSGISPNIP-PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL---IDE 229 G+ + P P + V + G LE SN N + M Q++ T+ F T L +D+ Sbjct: 176 ADGLFRDTQGPAPAD--GNVQLAVGALEGSNVNPVQAMIQILDNTRAFEMQTKLMQTVDQ 233 Query: 230 NEKSMLE 236 N ++ + Sbjct: 234 NHQAATQ 240 >gi|229544402|ref|ZP_04433460.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] gi|229324887|gb|EEN90564.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] Length = 254 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 22/255 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + L T+ +N++N +T G++ +V F + AI + + Sbjct: 1 MLRSLYSGVSGMKNFQTELDTIGNNIANVNTYGYKKGRVTFKD---AISQTLASATPGTS 57 Query: 61 SGKEYLSKEVGSFI---------STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 + + L ++GS STG LDFA+ GD +F + TR G F D+ Sbjct: 58 AQQVGLGSQIGSIDTVDTSGSPESTGRPLDFAITGDGYFRVADGNNTYYTRAGNFYFDDN 117 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFV 170 LV++ G + VL I + + F+V G I+ Q G I T+ + + G Sbjct: 118 RRLVNSEG-FTVLGTNGQAITLGANVKSFSVATDGTITDQDGNTIGTISIATFQNPAGLT 176 Query: 171 R-------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + NS P ++ +G T+K G+LE SN + E+ MI + F + Sbjct: 177 KVGGNLYTTTNSNAGTVTVSQPGQNGAG-TIKSGYLEMSNVDLSEELTNMIVAERGFQAN 235 Query: 224 TTLIDENEKSMLEAI 238 T +I +++ + E + Sbjct: 236 TRIITTSDEILQELV 250 >gi|54308098|ref|YP_129118.1| flagellar basal body rod protein FlgF [Photobacterium profundum SS9] gi|46912524|emb|CAG19316.1| putative flagellar basal-body rod protein FlgF [Photobacterium profundum SS9] Length = 249 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 37/223 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 + T A+N++N T GFR D++Q S A G+ S+ Sbjct: 19 MQTHANNLANVRTTGFRA--------------DLEQARSMQAYGEGLPSRVFAMTERPGQ 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 GS ++TG +LD A+EGD W A+ G TR G K+ + G L +++G +L Sbjct: 65 DFSQGSVMTTGRDLDVAIEGDGWLAVLDASGQEAYTRAGHLKIDETGMLQNSNGNL-MLG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN-------SGIS 178 PI IP VG G IS + + VD + VR +N +G+ Sbjct: 124 ENGGPIFIPLPISKIQVGNDGTISVLPQGAPPEAMEIVDRLK-LVRPDNRDLFKDVNGLF 182 Query: 179 PNIPPTPLEDL-SGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P + D +GVT+ +G LE SN N++ EM MI L + F Sbjct: 183 KSKTPGVIYDADAGVTLLKGALEGSNVNAVGEMTSMIDLQRHF 225 >gi|116694220|ref|YP_728431.1| flagellar basal body rod protein FlgF [Ralstonia eutropha H16] gi|113528719|emb|CAJ95066.1| flagellar basal body rod protein [Ralstonia eutropha H16] Length = 247 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 17/229 (7%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 L+Q+ + V++N++N T FR +V V + + + +F + G Sbjct: 16 LDQQ-AAVSNNLANVSTPAFRA-QVNLYRAVPVVGPEAGTR-AFTVASTPGADMRAGPLT 72 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG LD AL+G+ W +++P G TR G +V DG + + SG PV+ P+ + Sbjct: 73 YTGRTLDVALQGNGWLVVQAPDGTEAYTRAGALQVAQDGQVQTISG-LPVMGDGG-PLAV 130 Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYS------VDMSQGFVRRENSGISPNIP-PTPL 186 P ++ +G G I+ +G A+ GL V+ + R + G+ P PL Sbjct: 131 PPGSQV-TIGTDGTITARGPGEASAGLAQVGRLRVVNPPNDAIARGDDGLFRLRPGAQPL 189 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEK 232 E V V G LE SN N M +MI ++F +I D NE+ Sbjct: 190 EADPTVRVISGALEGSNVNPTEAMVEMIANARRFEMQMKMIQGADGNEQ 238 >gi|302392939|ref|YP_003828759.1| flagellar basal-body rod protein FlgG [Acetohalobium arabaticum DSM 5501] gi|302205016|gb|ADL13694.1| flagellar basal-body rod protein FlgG [Acetohalobium arabaticum DSM 5501] Length = 262 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + + T+++N++N +T GF+ +V F +++ G N Q + + Sbjct: 11 GMKAQ---QLNIDTISNNLANVNTNGFKKSRVNFQDLMYQSLREAGTPNNQGSQVPAGIE 67 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 G GSF TG LD A+EGD +F + P G + TRDG FK +G Sbjct: 68 VGHGVRPAATQKLFAQGSFQQTGNPLDMAIEGDGFFQVVRPNGQVGYTRDGSFKRDSNGR 127 Query: 114 LVSASGKYPVLDMASVP---------------IQIPQKDEIFNVGEKGEISQKGKVIATM 158 +V++ G YP+ ++P ++ P +E+ VG+ E+S + Sbjct: 128 IVTSDG-YPLASDITIPEDTTDVSITAEGRVMVKQPGNEEVTEVGQI-ELS---RFSNPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL S+ + F SG P + P ED G T+ +G+LE N + EM MI + Sbjct: 183 GLKSIGRNL-FAETPASG-GPTV-GVPAEDGFG-TISQGYLEKGNVKVVEEMTNMIAAQR 238 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + I +++ ML+ N+ Sbjct: 239 AYEVNSKAIKASDQ-MLQQANNL 260 >gi|125975104|ref|YP_001039014.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|256003242|ref|ZP_05428234.1| flagellar basal-body rod protein FlgG [Clostridium thermocellum DSM 2360] gi|281418478|ref|ZP_06249497.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|125715329|gb|ABN53821.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|255992933|gb|EEU03023.1| flagellar basal-body rod protein FlgG [Clostridium thermocellum DSM 2360] gi|281407562|gb|EFB37821.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316939269|gb|ADU73303.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 266 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 23/159 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----------IDQKIS 57 G+ AQ + + +A+N+SN +T ++ +++F +++ N ++ ++ Sbjct: 11 GMTAQ---QLNVDVIANNLSNVNTTAYKKERLEFKDMLYDTLNRAYILDGEGRPVNLQVG 67 Query: 58 F----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK--VTD 110 + +A+ K + S G+F T LD A++GD +F + PRG I+ TRDG FK VT+ Sbjct: 68 YGTVPMATLKNFQS---GNFEKTDNPLDLAIDGDGFFMVLGPRGDIVYTRDGSFKISVTE 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +G++++ S YPVLD + V I + NV GE+S Sbjct: 125 NGNMLTTSDGYPVLDESGVEIILDIDISKLNVSSDGELS 163 >gi|289548727|ref|YP_003473715.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] gi|289182344|gb|ADC89588.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] Length = 241 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 23/229 (10%) Query: 9 LAAQLALEQR-LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKIS-----F 58 LA+ + L QR L + +NM+N T F+ V + V A +D ++ + Sbjct: 11 LASGMMLSQRKLEVITNNMANVSTPSFKR-DVMLASVWQAPTPLSVPSVDPRLPQNNFLY 69 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 G Y G TG D A++GD +FA+ S ++ TR G F++ DG LV+ Sbjct: 70 PVVGGIYTDLRQGGLRHTGNSTDLAIDGDGFFAVSSGNEVLYTRKGNFRLDKDGYLVNEL 129 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G + D S P+++ D + E G I G +G+Y ++ Q G + Sbjct: 130 GMRILTDNGS-PVRV---DGDLRITEDGSIFSGGLFYGRLGIYRLEGPQKIGSDLFRGRA 185 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 TP E V +GFLED+N N + E+ ++I + T LI Sbjct: 186 -----TPSERFK---VLQGFLEDANVNPIEELVKLIEAHRAHEIYTNLI 226 >gi|323704840|ref|ZP_08116417.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535766|gb|EGB25540.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 19/156 (12%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G T +LDFA++G +F + +P G+ TRDG F + ++G LV+ G Y VL P Sbjct: 82 GDIEKTDGKLDFAIDGSGFFTVSTPSGVRYTRDGSFTLNNNGYLVTKDGYY-VLGQNG-P 139 Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ-GFVRRENSGI-----SPNIPPT 184 IQ+ D +V E G IS G+V+ + + VD + +R+E + + IP T Sbjct: 140 IQLNNGD--ISVDESGNISVNGQVVDKLNI--VDFANYNTLRKEGNNLFFTTGGQAIPAT 195 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 VK+G+LE SN N + EM MI + + Sbjct: 196 S-------KVKQGYLEGSNVNPVDEMVTMISAMRTY 224 >gi|78044159|ref|YP_359861.1| flagellar hook-basal body rod protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996274|gb|ABB15173.1| flagellar hook-basal body rod protein [Carboxydothermus hydrogenoformans Z-2901] Length = 244 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-VASGK 63 GL A L ++L TVA+N++N +TVG+R T+ F E + K+ + V Sbjct: 11 GLKAGL---KQLDTVANNIANINTVGYRADITVNSGFEEKILNYAGKEVGKLEYGVNPDI 67 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 YL G ++ TG LDFAL G+ +F +E+P G+ TR G F+V DG L +G Sbjct: 68 NYLDLSSGKYVPTGRNLDFALVGNGFFVVETPAGLRYTRAGDFQVNRDGYLCLPNG 123 >gi|254508430|ref|ZP_05120550.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus 16] gi|219548640|gb|EED25645.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus 16] Length = 249 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 13/213 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q L A+N++N T GFR + + + A + ++ F + + + + GS I+T Sbjct: 17 QALQLRANNLANVSTTGFRA-DLAQARSMQAYGEGLPTRV-FSMTERPGHNFQQGSVITT 74 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G +LD +EG+ W ++ G LTRDG K+ +G LVS +G VL PI +P Sbjct: 75 GRDLDVTIEGNGWISVLDKTGKEGLTRDGNLKIDVNGLLVSGNGNL-VLGETGAPITLPI 133 Query: 136 KDEIFNVGEKGEIS--QKG------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 +G G IS +G +V+ + L + D +Q + N P E Sbjct: 134 PLSKVEIGTDGTISVVPQGAPADAIEVVDRIKLTNTD-NQSLFKDVNGLFRAKDPNAAYE 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +GV + G +E SN N++ EM +I L ++F Sbjct: 193 ADAGVKLLTGAIEGSNVNAIGEMTSLIDLQRQF 225 >gi|313905150|ref|ZP_07838519.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] gi|313470053|gb|EFR65386.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] Length = 253 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 22/250 (8%) Query: 9 LAAQLALEQR-LSTVADNMSNTDTVGFR--TIKVK-FSEVV------GAIKNDIDQKIS- 57 L + L +QR L+T+++NM+N +T G++ T+ V F E + A KN D ++ Sbjct: 8 LTSGLITQQRKLNTISNNMANVETAGYKRDTMTVSTFQEEMLIRTGQTAKKNPTDLAVTT 67 Query: 58 -FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 A+ + Y GSF T + DFA+ GD +F +++P GI TR+G F V G ++ Sbjct: 68 PIAAADQTYTDFTQGSFDQTDGKYDFAISGDGFFTIQTPNGIQYTRNGAFSVNAQG-ILC 126 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVIATMGLYSVDMSQGFVRRE 173 V+ I+I +E F V + G I + G V + + + G + +E Sbjct: 127 LDNIGTVVGANGGTIRIT--NENFVVDDYGRIMSAAGDGTVYGQLRITGFE-DTGTLHKE 183 Query: 174 NSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ++G+ P +DL+G T V G+LE SNA+ + +M +M+ + S ++ ++ Sbjct: 184 DNGMFS--APGGGQDLTGRTRVFNGYLEASNADMIGQMTEMMSSQRALQSAAQMLKMYDQ 241 Query: 233 SMLEAIRNIA 242 + +A ++ Sbjct: 242 VLSKASSDVG 251 >gi|301631988|ref|XP_002945073.1| PREDICTED: flagellar basal-body rod protein flgF-like [Xenopus (Silurana) tropicalis] Length = 430 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 11/223 (4%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + R + +++N++N T GFR F V ++ D F + G Sbjct: 199 VAHRQAVLSNNLANVSTNGFRAEMSTFRSV--PMQGDGATTRVFALEATSGHVQTPGQVQ 256 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG LD G AWFA++ G TR G F+VT G LV+++G PVL PI + Sbjct: 257 RTGRNLDAMAVGPAWFAVQGLDGTEAYTRAGSFQVTQAGQLVTSTG-LPVLSDGGTPIDV 315 Query: 134 PQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGF---VRRENSGISPNIPPTPLED 188 P EI +G G ++ + G+ A +G + + G ++R N G+ PL Sbjct: 316 PPGAEI-TLGADGTLTAQTAGQPPAPVGRIKL-ATPGLDDPLQRGNDGLFRTASGAPLAQ 373 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G LE SN N++ M MI ++F L+ E Sbjct: 374 DPNAALLSGALEGSNVNAVESMVGMIAAARQFEQQMRLLQTAE 416 >gi|52841452|ref|YP_095251.1| flagellar basal body rod protein FlgF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628563|gb|AAU27304.1| flagellar basal body rod protein FlgF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 248 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 32/243 (13%) Query: 17 QRLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 +R +A+N++N +T GF+ + + + A N+ SF+ + G I Sbjct: 17 KRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSFITQNANGIDTSPGEII 76 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG +LD A++GD W A++ +G TR G ++ +G L++ASGK + D PI I Sbjct: 77 TTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNPNGQLITASGKVVLGDGG--PISI 134 Query: 134 PQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMS------QGFVRRENSGISP 179 P I +G G IS + ++ + L ++D + +G ++ ++ + Sbjct: 135 PPAQSI-EIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNNIYKNDEGLIQLKSGAATA 193 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLE 236 N S + ++ G LE SN ++ +M MI ++F++ + + +D+N + + + Sbjct: 194 N---------SNIKLQSGALEGSNVKAIDQMVAMISAGREFDAQMKLLSTVDDNGQKLAQ 244 Query: 237 AIR 239 ++ Sbjct: 245 LLQ 247 >gi|78358199|ref|YP_389648.1| flagellar basal-body rod protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220604|gb|ABB39953.1| flagellar basal-body rod protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 260 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 118/251 (47%), Gaps = 34/251 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFV 59 MQ S L L E RL+ +A+N++N +T G++ + F + + +D + + I V Sbjct: 1 MQDSMYSALFGALTNEHRLNNIANNLANVNTTGYKRDVLAFKDTFLSFAHDEVMEPIPNV 60 Query: 60 ASGKEY------------LSK---EVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 S K + L+K GS TG LD A+ GD +F + +P G TR+G Sbjct: 61 RSKKMFPEPIHIAKPRIALAKTDFSQGSLKLTGGTLDMAVHGDGFFKVRTPDGEFYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F+ T DG LV+ G +PVL A IQIP + + V E G I G+ I + + ++D Sbjct: 121 NFRQTSDGQLVTQQG-WPVLG-AGGDIQIPPRANL-TVAENGTIYADGEEIGQVQVVTLD 177 Query: 165 -----MSQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 QG F RE + P+E+ V +GFLE +N + EM MI Sbjct: 178 NLDALEKQGSNLFRLREGA----EAQEVPVEN---PVVLQGFLETANVEVVTEMVNMIEA 230 Query: 217 TQKFNSITTLI 227 ++F + ++ Sbjct: 231 NRQFEAYQKIM 241 >gi|148976395|ref|ZP_01813101.1| polar flagellar FlgF [Vibrionales bacterium SWAT-3] gi|145964218|gb|EDK29474.1| polar flagellar FlgF [Vibrionales bacterium SWAT-3] Length = 249 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 13/213 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q L A+N++N T GFR + + + A + ++ F + + + GS ++T Sbjct: 17 QALQLRANNLANVSTTGFRA-DLAQARSMQAYGEGMPTRV-FSMTERPGHNFAQGSVVTT 74 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G +LD ++GD W ++ G LTR+G KV +G L +ASG + VL PI +P Sbjct: 75 GRDLDVTIQGDGWISVMDNTGREGLTRNGNLKVDQNGLLTNASG-HLVLGENDAPITLPI 133 Query: 136 KDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 +G G IS ++ +V+ + L D +Q + N P E Sbjct: 134 PISKVEIGTDGTISVIPQGAPAEELEVVDRIKLVRPD-NQSLFKDTNGLFRSKNPEQAYE 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + VT+ +G +E SN N++ EM +I L ++F Sbjct: 193 ADAAVTLLKGAVEGSNVNAVGEMTSLIDLQRQF 225 >gi|296283227|ref|ZP_06861225.1| flagellar basal-body rod protein FlgF [Citromicrobium bathyomarinum JL354] Length = 248 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 8/143 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M S + L+ + AL +R+ VA+N++NT TVGFR + F E V AI +D + Sbjct: 1 MDISSYVLLSQEQALRRRMDIVANNLANTSTVGFRREQPMFREYVERADEAIIDDA-KPT 59 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSL 114 SFV + +G+F TG LD ++G + A+E P G TR G V + G L Sbjct: 60 SFVLDLRAIHDTSLGAFQPTGNPLDVMIDGPGYLAVELPDGAGTAYTRAGFVSVLETGEL 119 Query: 115 VSASGKYPVLDMASVPIQIPQKD 137 +A G+ +LD PI +P ++ Sbjct: 120 ATAGGQR-LLDEGGQPIVVPPEE 141 >gi|91776310|ref|YP_546066.1| flagellar basal-body rod FlgF [Methylobacillus flagellatus KT] gi|91710297|gb|ABE50225.1| Flagellar basal-body rod FlgF [Methylobacillus flagellatus KT] Length = 246 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 7/227 (3%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 +EQ+ ST A+N++N T GFR F V + +D +FV + G Sbjct: 16 MEQQ-STTANNLANATTTGFRAQIDSFRAV--PVLSDGLPTRAFVVDATVGTNFNSGVIN 72 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG ELD A+ WFA++ P G TR+G FK+ ++G L + G + D + I + Sbjct: 73 TTGRELDLAIRDQGWFAVQRPDGTEAYTRNGNFKLNENGVLQTQDGMMVLGDNGPITIPL 132 Query: 134 PQKDEIFNVGEKGEISQKGKVIAT--MG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 K N G ++ + T +G L V+ + R G+ P+ + Sbjct: 133 EAKVAFANDGMVSAVATNVVPLFTNMIGRLKLVNPGDDNLVRGPDGLFETRNREPVPASA 192 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 VT+ G LE SN N + EM MI ++F+ T LI E + +A Sbjct: 193 NVTIVSGALEGSNVNVVEEMVNMISQARQFDLQTKLIQNAENNATKA 239 >gi|319405401|emb|CBI79020.1| Flagellar basal-body rod protein flgG [Bartonella sp. AR 15-3] Length = 264 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKI----S 57 G+AAQ + L +A+NM+N +T GF+ + +F++++ + N ++Q I + Sbjct: 12 GMAAQ---QTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGVPNMLNQAIIPEGA 68 Query: 58 FVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + G + G+F+ TG LD A+ G+ WF ++ P G + TR G F +++ G Sbjct: 69 MIGMGVRTAAVRTVNTQGAFVQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETG 128 Query: 113 SLVSASGKYPVLDMASVPIQ------------IPQKDEIFNVGEKGEISQKGKVIATMGL 160 +++ G V + ++PI Q D N E G + + + +GL Sbjct: 129 QIITLDGNL-VQPVVTIPIGSKNITVSSDGTIYYQTDTDPNAVEAGRL-RLVNFVNEVGL 186 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + R + +P +P P ED G ++ + LE SN + + EM ++I + + Sbjct: 187 EPI--GDNLFRETQASGAP-VPGDPKEDGYG-SIMQAMLETSNVDPVKEMTELIAAQRSY 242 >gi|330826756|ref|YP_004390059.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans K601] gi|329312128|gb|AEB86543.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans K601] Length = 246 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 9/223 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A R + +A+N++N T GFR F V ++ F + G Sbjct: 14 AAAHRQAVLANNLANVSTYGFRAEMSSFRSV--PLQGSGSTTRVFALEATSGHVETPGPV 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G+AWFA++ G TR G F+VT+ G LV+ +G PVL PI Sbjct: 72 QRTGRNLDAMAAGNAWFAVQGLDGTEAYTRAGSFEVTEAGQLVTPTG-LPVLSDGGAPIT 130 Query: 133 IPQKDEIFNVGEKGEISQK--GKVIATMGL--YSVDMSQGFVRRENSGISPNIPPTPLED 188 PQ E+ +G G ++ + G+ T+G + ++R + G+ P+ Sbjct: 131 APQGAEL-TLGADGTVTARVPGQQPQTVGRLKLATPAQDDPLKRGDDGLFRTASGEPMAS 189 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G LE SN N + M MI ++F L+ E Sbjct: 190 DPAARLLAGALEGSNVNPVESMVGMIAAARQFEQQMRLLQTAE 232 >gi|310644366|ref|YP_003949125.1| fagellar hook-basal body protein [Paenibacillus polymyxa SC2] gi|309249317|gb|ADO58884.1| Fagellar hook-basal body protein [Paenibacillus polymyxa SC2] Length = 275 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 57/265 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + + +++QRL +ADN++N +TVG+++ + F +V+ ++ Q +++ Sbjct: 1 MNNSMIGAMVSMASVQQRLDLIADNIANVNTVGYKSKQGSFEDVLANVQ---QQPSTYLQ 57 Query: 61 SGKE--------YLSK--------EVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 +G+ Y K E G TG D A++G+A F ++ TRDG Sbjct: 58 NGRAMPLGYNLGYGVKTTAIMKNMEQGPLKETGLPTDLAIQGNALFEIQGNGQKAWTRDG 117 Query: 105 RFKVTDDGS------LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE--ISQKGKVIA 156 F D + L +A G Y VLD +P+ P ++ + GE I G Sbjct: 118 GFHFIPDPNDNETMMLTTAEG-YSVLDNNDIPVTAPAGSKVA-INSDGELLIRANGTGAP 175 Query: 157 TMG----LYSVDMSQGFVRREN-----------------SGISPNIPPTPLEDLSGVTVK 195 T+G L V +G +R++ +G++ +P + V+V+ Sbjct: 176 TVGQRIKLMDVQRPEGLQQRDDNLFVLANGVTEADVFGAAGVAGAVP-------TDVSVR 228 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKF 220 G+LE+SN N EM M+ + + + Sbjct: 229 SGYLEESNVNLAGEMTDMMQVQRMY 253 >gi|94312670|ref|YP_585879.1| flagellar basal body proximal rod protein [Cupriavidus metallidurans CH34] gi|93356522|gb|ABF10610.1| flagellar basal body proximal rod protein [Cupriavidus metallidurans CH34] Length = 247 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 18/220 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ L+Q+ + V++N++N T F+ +V V + + Q +F + + Sbjct: 12 AKQILDQQ-AAVSNNLANASTTAFKA-QVNMYRAVPVVGQET-QTRAFTLASTPGADMKA 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G TG LD AL+G+ W A++ P G TR G +V+ DG L ++ G PV+ Sbjct: 69 GPLSYTGRNLDVALQGNGWLAVQMPDGSEAYTRAGSLQVSPDGQLQTSLG-LPVMGDGG- 126 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-------SQGFVRRENS--GISPN 180 PI IP + ++G G ++ +G A GL V +G R ++ + P Sbjct: 127 PIGIPPGSTV-SIGTDGTVTARGPGEAANGLAQVGKLRVVTPPPEGLARGDDGYFRLRPG 185 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + PL+ V V G LE SN N + M +MI ++F Sbjct: 186 V--DPLQQDPNVRVISGALEGSNVNPVESMVEMIANARRF 223 >gi|254520946|ref|ZP_05133001.1| flagellar basal-body rod protein FlgF [Stenotrophomonas sp. SKA14] gi|219718537|gb|EED37062.1| flagellar basal-body rod protein FlgF [Stenotrophomonas sp. SKA14] Length = 249 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 110/260 (42%), Gaps = 35/260 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK----------FSEVVGAIKN 50 M + + + A Q T++ N++N+DT GF+ F+ V A+ Sbjct: 1 MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAFPIRGPGFASRVDALHV 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 D ++ G+ TG LD AL+ W A++S G TR VT Sbjct: 61 DAG------------FNRRPGAQHITGKPLDLALQTGTWLAVQSTDGSEAYTRGAALSVT 108 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG----LYSV 163 +G LV++SG+ PVLD + PI IP + +G G IS +G+ TM + V Sbjct: 109 PNGQLVTSSGR-PVLDDNNNPIAIPPY-QAMEIGADGTISIIPQGEGPQTMAQVGRIKVV 166 Query: 164 DMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + R G+ N P P G V G LE SN ++ + QMI L +++ Sbjct: 167 QAPDERLERGLDGLFRNTDPQQPFAPAQGTAVHSGQLEGSNVDAAGALVQMIQLQRQYEM 226 Query: 223 ITTLI---DENEKSMLEAIR 239 +I D+N +S +R Sbjct: 227 QVQVIKHGDDNARSANSLLR 246 >gi|190574261|ref|YP_001972106.1| flagellar basal body rod protein FlgG [Stenotrophomonas maltophilia K279a] gi|194365678|ref|YP_002028288.1| flagellar basal body rod protein FlgG [Stenotrophomonas maltophilia R551-3] gi|190012183|emb|CAQ45806.1| putative flagellar basal-body rod protein [Stenotrophomonas maltophilia K279a] gi|194348482|gb|ACF51605.1| flagellar basal-body rod protein FlgG [Stenotrophomonas maltophilia R551-3] Length = 261 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 119/265 (44%), Gaps = 48/265 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ------ 54 GL AQ + R+S V++N++NT+T GF+ + F +++ G + Q Sbjct: 11 GLDAQ---QMRMSVVSNNLANTNTTGFKQDRASFEDLLYQQVRQPGGSSSAQTQLPTGLQ 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + VA+ K + E G TG LD + G +F ++ P G TRDG FK+ Sbjct: 68 LGTGVRVVATAKNF---EQGGQQQTGRALDVMVNGRGFFEVQMPDGSSAYTRDGSFKINQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---GKVIATMGLYSVD--- 164 D LV+ SG YPV IQIP+ + +G G IS K G +G ++ Sbjct: 125 DSELVTNSG-YPV----QPGIQIPEGAQSVTIGTDGTISVKMADGAASVEVGALTLTDFV 179 Query: 165 -----MSQG---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 ++G F+ SG + N P L+G+ TV +G LE SN N + E+ MI Sbjct: 180 NPAGLQARGENLFLETTASGPAQNGNP----GLNGLGTVVQGALEGSNVNVVEELVSMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 TQ+ + SML + N Sbjct: 236 -TQRAYEMNAKAISTTDSMLGYLNN 259 >gi|254521223|ref|ZP_05133278.1| flagellar basal-body rod protein FlgG [Stenotrophomonas sp. SKA14] gi|219718814|gb|EED37339.1| flagellar basal-body rod protein FlgG [Stenotrophomonas sp. SKA14] Length = 257 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 119/265 (44%), Gaps = 48/265 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ------ 54 GL AQ + R+S V++N++NT+T GF+ + F +++ G + Q Sbjct: 7 GLDAQ---QMRMSVVSNNLANTNTTGFKQDRASFEDLLYQQVRQPGGSSSAQTQLPTGLQ 63 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + VA+ K + E G TG LD + G +F ++ P G TRDG FK+ Sbjct: 64 LGTGVRVVATAKNF---EQGGQQQTGRALDVMVNGRGFFEVQMPDGSSAYTRDGSFKINQ 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---GKVIATMGLYSVD--- 164 D LV+ SG YPV IQIP+ + +G G IS K G +G ++ Sbjct: 121 DSELVTNSG-YPV----QPGIQIPEGAQSVTIGTDGTISVKMADGAASVEVGALTLTDFV 175 Query: 165 -----MSQG---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 ++G F+ SG + N P L+G+ TV +G LE SN N + E+ MI Sbjct: 176 NPAGLQARGENLFLETTASGPAQNGNP----GLNGLGTVVQGALEGSNVNVVEELVSMIE 231 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 TQ+ + SML + N Sbjct: 232 -TQRAYEMNAKAISTTDSMLGYLNN 255 >gi|302392940|ref|YP_003828760.1| flagellar basal-body rod protein FlgF [Acetohalobium arabaticum DSM 5501] gi|302205017|gb|ADL13695.1| flagellar basal-body rod protein FlgF [Acetohalobium arabaticum DSM 5501] Length = 245 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 123/243 (50%), Gaps = 18/243 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISFVASGKE 64 G+ A L +R + + +N++N+ T G++ T+ FSE++ ++ D+++ A Sbjct: 11 GMNASL---KRTNIITNNLANSTTPGYKKDQTVNKSFSEML--LRRMPDKEVIGTAGLGA 65 Query: 65 YLSKEV-----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + V GS T D+A+EG+ +FA+++P GI TR G F + DG +V+ +G Sbjct: 66 KVDETVTDFSAGSVHKTDNPFDWAIEGEGFFAVQTPEGIRYTRSGDFTLNQDGQVVTQNG 125 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + VL A P+++ E NV + + G+V+ + + + + G V +E + Sbjct: 126 NF-VLGQAG-PLEVV--GEQVNVDNQNNLVVDGQVVDQVRVVTFAENDGLV-KEGDDLYR 180 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + ++ + +G+LE SN N + M MI T+ + S ++ ++S+ + + Sbjct: 181 ATPDVGNQFMATGKINQGYLESSNVNVVESMTNMIEATRHYESNQRVVKAYDQSLDKTVN 240 Query: 240 NIA 242 ++ Sbjct: 241 SVG 243 >gi|94987183|ref|YP_595116.1| flagellar basal body rod protein FlgG [Lawsonia intracellularis PHE/MN1-00] gi|94731432|emb|CAJ54795.1| Flagellar basal body L-ring protein [Lawsonia intracellularis PHE/MN1-00] Length = 261 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 38/242 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQ 54 M S +A + + +++N++NT+T GF+ + +F ++ + D D Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISNNLANTNTSGFKKSRAEFEDLMYQTMKIAGSATDGDN 60 Query: 55 KISF---VASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 +I V G ++ ++ G F +TG LD A+EG+ +F + ++ TR G Sbjct: 61 RIPVGIQVGMGVRPTAVHKFFTQ--GDFQNTGNPLDMAIEGEGFFQVLVGDQLMYTRAGA 118 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGL 160 FK+ DG+LV+A+G YP+ +VP P + + E+G I+ G+ IA + L Sbjct: 119 FKLNQDGTLVTANG-YPLQPEFTVP---PDAKSV-AISERGRITALDANGQEIAAGEIPL 173 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 YS G ++ E SG + + P E+ G T+ +GFLE SN + EM Q Sbjct: 174 YSFVNPAGLDAKGRNLYIPTEASGEA--VEGVPGEENLG-TIAQGFLEMSNVEVVDEMVQ 230 Query: 213 MI 214 MI Sbjct: 231 MI 232 >gi|224372657|ref|YP_002607029.1| flagellar basal body rod protein FlgG [Nautilia profundicola AmH] gi|223588586|gb|ACM92322.1| flagellar basal-body rod protein FlgG [Nautilia profundicola AmH] Length = 262 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 126/254 (49%), Gaps = 31/254 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDIDQKISFVASGKEY 65 +A + ++ V++N+SN +T+G++ + +F+ E G + Q + + G Sbjct: 13 MAQQMQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTSTSTTTQSPTGINVGLGV 72 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 V G+F TG LD A++GD +F ++ P G I TRDG FK+ DG++V++ Sbjct: 73 RPTAVTKIFSQGNFKETGNNLDVAIQGDGFFQVQLPDGRIAYTRDGAFKLDADGNIVTSD 132 Query: 119 GKYPVLDMASVPIQIPQ----KDEIFNVGEKGEISQK-------GKVIATMGLYSVDMSQ 167 G Y ++ ++P Q D +V E G+ + K I GL+S+ S Sbjct: 133 G-YKLIPNITLPADTVQVSIGTDGTVSVLEAGQTQMQQIGQIEIAKFINPAGLHSLG-SN 190 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 ++ SG P I TP D +G +++GF+E SN + EM +I + +++ + I Sbjct: 191 LYIDTTASG-DP-IVSTPGLDGTG-ELRQGFVEMSNVQLVEEMTDLITGQRAYDAASKAI 247 Query: 228 DENEKSMLEAIRNI 241 +++ ML+ + N+ Sbjct: 248 VTSDE-MLQTVNNL 260 >gi|330818584|ref|YP_004362289.1| flagellar basal body rod protein FlgF [Burkholderia gladioli BSR3] gi|327370977|gb|AEA62333.1| flagellar basal body rod protein FlgF [Burkholderia gladioli BSR3] Length = 250 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 102/233 (43%), Gaps = 18/233 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---VGAIKNDIDQKISFVASGKEYLSKEV 70 ALEQ+ S +A+N++N T GFR + V G N + +FV Sbjct: 15 ALEQQ-SVIANNLANASTTGFRAQLATYRAVPMNFGEASNPTTTR-TFVLDSTPGADYTP 72 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G TG LD A++G W ++ +P G TR G V ++G LV+AS PV+ Sbjct: 73 GPITRTGNPLDVAVQGPGWLSVLAPDGSEAYTRAGNLHVDENGQLVNAS-NLPVVGGGG- 130 Query: 130 PIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPP 183 PI IP ++ +G G +S IA + L V+ + R + G+ Sbjct: 131 PIAIPPNAKV-TIGPDGTVSVLAAGDPPSAIAMIDQLKLVNPDPSTITRGDDGLFRTTDG 189 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + VTV LE SN N + M M+ + F T LI D+NE++ Sbjct: 190 NPADADPNVTVAAESLEGSNVNPVAAMVSMLDNARAFQLHTKLISTADQNEQT 242 >gi|303239789|ref|ZP_07326313.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592726|gb|EFL62450.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 265 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK------- 55 G+ AQ + + +++N+SN +T ++ +V+F +++ N D D K Sbjct: 11 GMTAQ---QLSVDVISNNLSNVNTTAYKKERVEFKDMLYETLNRASVMDGDGKPVNLQVG 67 Query: 56 --ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK--VTDD 111 S VA+ K + +G+ T LDFA++GD +F + P+G TRDG FK V++D Sbjct: 68 HGSSIVATSKSF---GIGNLEKTDNPLDFAIDGDGFFTVSGPKGTAYTRDGNFKISVSED 124 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI---ATMGLYSVDM 165 G+ ++ S YPVLD I I V + GE+S G V+ +G+ Sbjct: 125 GNKLTTSDGYPVLDDTGAEINIDVDVSKLIVSDFGELSYTDDTGVVVPLGQKIGIVKFSN 184 Query: 166 SQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 QG + NS + + +S VK+ ++E SN + EM ++I Sbjct: 185 RQGLESMGSNLYASNSASGEAVQDAEMGTVS--NVKQYYIESSNVQVVEEMVKLI 237 >gi|313894945|ref|ZP_07828504.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976398|gb|EFR41854.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 3/172 (1%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ +TG DFA+ G+ +F +++P+G TRDG F + +G L + G+ VL P Sbjct: 95 GALQTTGNTYDFAISGEGYFVIDTPQGPRYTRDGSFYRSANGQLQNVRGQ-AVLSAQGRP 153 Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 I IP NV G I IA +G D +++ ++ P P + Sbjct: 154 INIPADATRVNVSGDGRIYVGNTEIAQLGFVQFDAPDAVIKQGDNLYRPQEGARPTQATG 213 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 T+++G LE SN + + EM ++I+ + + + + + + + +A+ ++ Sbjct: 214 --TIEQGLLEMSNTSIVTEMVELINNYRVYEAGSRAVQTQDSLLDKAVNDVG 263 >gi|188592118|ref|YP_001796716.1| flagellar basal body rod protein flgf [Cupriavidus taiwanensis LMG 19424] gi|170938492|emb|CAP63479.1| Flagellar basal-body rod protein flgF [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 17/229 (7%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 L+Q+ + V++N++N T FR +V V + + + +F + G Sbjct: 16 LDQQ-AAVSNNLANVSTPAFRA-QVNLYRAVPVVGPEAGTR-AFTLASTPGADMRAGPLT 72 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG LD AL+G+ W +++P G TR G +V DG + + SG PV+ P+ + Sbjct: 73 YTGRALDVALQGNGWLVVQAPDGSEAYTRAGALQVAQDGQVQTISG-LPVMGDGG-PLAV 130 Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYS------VDMSQGFVRRENSGISPNIP-PTPL 186 P ++ +G G I+ +G A+ GL V+ + R + G+ P PL Sbjct: 131 PPGSQV-TIGTDGTITARGPGEASAGLAQVGRLRVVNPPNDAIARSDDGLFRLRPGAQPL 189 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEK 232 E V V G LE SN N M +MI ++F +I D NE+ Sbjct: 190 EADPTVRVISGALEGSNVNPTEAMVEMIANARRFEMQMKMIQGADGNEQ 238 >gi|90411006|ref|ZP_01219020.1| putative flagellar basal-body rod protein FlgF [Photobacterium profundum 3TCK] gi|90328219|gb|EAS44530.1| putative flagellar basal-body rod protein FlgF [Photobacterium profundum 3TCK] Length = 249 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 37/223 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 + T A+N++N T GFR D++Q S A G+ S+ Sbjct: 19 MQTHANNLANVRTTGFRA--------------DLEQARSMQAYGEGLPSRVFAMTERPGQ 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 GS ++TG +LD A+EGD W A+ G TR G K+ + G L +++G +L Sbjct: 65 DFSQGSVMTTGRDLDVAVEGDGWLAVLDASGQEAYTRAGHLKIDETGMLQNSNGNL-MLG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI---- 181 PI IP VG G IS + + VD + VR +N + ++ Sbjct: 124 ENGGPIFIPLPINKIQVGNDGTISVLPQGAPPDAMEIVDRLK-LVRPDNRDLFKDVNGLF 182 Query: 182 -PPTPLEDL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 TP E +GVT+ +G LE SN N++ EM MI L + F Sbjct: 183 KSKTPGETYDADAGVTLLKGALEGSNVNAVGEMTSMIDLQRHF 225 >gi|254457917|ref|ZP_05071344.1| flagellar basal body rod protein [Campylobacterales bacterium GD 1] gi|207085310|gb|EDZ62595.1| flagellar basal body rod protein [Campylobacterales bacterium GD 1] Length = 273 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 31/243 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ+ + A + RL T+A+N++N +TVGF+ + F + ++++ K + Sbjct: 1 MQSGYYSSAAGMVTQFNRLDTIANNLANVNTVGFKEDNLVVGDFQRLYKEARDELPNK-N 59 Query: 58 FVASGKEYLSKE---------------VGSFISTGTELDFALEGDA-WFALESPRGIILT 101 G ++L++ VG+ T ++DFAL + +F +++P+G+ LT Sbjct: 60 HSEDGAQFLNRAMTKAPQVVDSYTDFTVGNTQQTDNDMDFALSREGLFFLVKTPQGVRLT 119 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDM----ASVPIQIPQKDEIFNVGEKGEISQK----GK 153 RDG F D+G LV+ +G Y VL A I + + V + G+I + K Sbjct: 120 RDGSFTKDDEGRLVTKNG-YEVLPNDYFEAGGNITFNDDENVIKVDKHGQIYKNIPNSVK 178 Query: 154 VIATMGLYSVDMSQ-GFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMG 211 ++ L+ +++E + + T L+ L V +GF+E SN N++ M Sbjct: 179 LVQGSHLFVAQPDNVALLKKEGNNLYRYDGTTDLKSLDNTEAVMQGFVEKSNVNAVKMMT 238 Query: 212 QMI 214 QMI Sbjct: 239 QMI 241 >gi|268680165|ref|YP_003304596.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] gi|268618196|gb|ACZ12561.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] Length = 267 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 110/247 (44%), Gaps = 44/247 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-------------A 47 MQ + A + RL+ +++N++N +T F+ V VVG Sbjct: 1 MQNGYYDVTGAMVTQFNRLNVISNNLANLNTTAFKRDDV----VVGDFKRIFQEYKEEMP 56 Query: 48 IKNDIDQKISFVASG--------KEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI 98 ++++ + FV + ++Y+ E G +TG LDFAL+ DA+F +E+P GI Sbjct: 57 LRDNTKEASKFVNAAMSRVPHIVEQYIKYEQGGIKNTGNALDFALKRDDAFFMVETPNGI 116 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE--ISQKGKV-- 154 LT++G F + + G L + G YPVL P Q + V E GE ++Q G + Sbjct: 117 RLTQNGSFTLNNVGILTTKEG-YPVL-----PSTYFQNKQYIEVPEDGELRVNQSGALFV 170 Query: 155 ----IATMGLYSVDMSQGFVRRENS--GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 I M L D + + S T LE+ G V +GFLE SN N + Sbjct: 171 GDDEIGQMYLVKSDDIKSLTKEGESLYAFKSTDELTQLEN--GDFVAQGFLETSNINPVS 228 Query: 209 EMGQMIH 215 EM +I Sbjct: 229 EMVGLIE 235 >gi|172061971|ref|YP_001809623.1| flagellar basal body rod protein FlgF [Burkholderia ambifaria MC40-6] gi|171994488|gb|ACB65407.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria MC40-6] Length = 252 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 109/242 (45%), Gaps = 28/242 (11%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVAS--GK 63 A +L+Q+ + VA+N++N T GFR + V G+ + + +AS G Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSTSDPTTTRTYVLASTPGA 70 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 +Y + G TG LD A++G W A+++ G TR G V ++G LV+AS P Sbjct: 71 DYAA---GPITRTGNPLDVAVQGAGWLAVQTADGSEAYTRAGNLHVDENGQLVNAS-NLP 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRREN 174 V+ PI +P E+ +G+ G +S ++ M L + D + + R N Sbjct: 127 VIGNGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT--LSRGN 182 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENE 231 G+ P + V V LE SN N + M MI + F + LI D+NE Sbjct: 183 DGLFRTADGNPADSDPSVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNE 242 Query: 232 KS 233 +S Sbjct: 243 QS 244 >gi|196249721|ref|ZP_03148417.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] gi|196210597|gb|EDY05360.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] Length = 273 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 43/266 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVASGKEY------ 65 AL+QRL T++ N++N++T GF+ + F+E++ + + D+ +G Y Sbjct: 14 ALQQRLDTLSHNIANSNTTGFKRREASFAELLTQQVDHLPDDEAPRQTPAGMRYGNGAGL 73 Query: 66 ----LSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTRDGRFKVTDDG--- 112 L G TG LDFA + WF + G I TR G F +T G Sbjct: 74 ASTMLVTAQGPLTETGRALDFAFAAANQWFRVRVTDGNGVATIGYTRAGNFSLTPIGGRL 133 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSVDMSQGF 169 +LV++ G+ PVLD + PI++P F + G ++ G V+A V++ Sbjct: 134 ALVTSDGR-PVLDETNAPIELPAHATDFQLSPTGTLTATDANGVVVA-----RVNLGVTV 187 Query: 170 VRREN--SGISPN---IPPTP--LEDLSG-----VTVKRGFLEDSNANSMYEMGQMIHLT 217 +RR + N +P P ++L+G + +K+G LE SN + E+ ++ T Sbjct: 188 IRRPQLLEALGDNFFTLPTAPGATQELNGNLRSQIAMKQGALEQSNVDLGEELIGLMATT 247 Query: 218 QKFNSITTLIDENEKSMLEAIRNIAS 243 + + I +E+ ML I N+ S Sbjct: 248 RAYQLNARAISISEQ-MLGLINNLRS 272 >gi|220934395|ref|YP_002513294.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. HL-EbGR7] gi|219995705|gb|ACL72307.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. HL-EbGR7] Length = 246 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 107/226 (47%), Gaps = 30/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASGKEYLS 67 A + AL Q +T N++N +T GF+ F+ +VVG + + K LS Sbjct: 12 AKETALTQARNT--QNLANANTTGFKASLDVFTSKQVVGPGHGT--RTYALTQDMKVDLS 67 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G +TG +LD A++G+ W A+++P G TR G +V G L + +G PVL Sbjct: 68 P--GPLQATGRDLDVAVQGNGWIAVQAPDGTEAYTRAGDLRVDSVGLLTTGTG-LPVLGE 124 Query: 127 ASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIA---TMGLYSVDMSQGFVRRENSGIS 178 PI +P E F +G G IS Q V+A + L + + + VR E+ I Sbjct: 125 GG-PIAVPPF-ETFEIGSDGTISIRPLGQGANVLAEVDRIKLVNPNPDE-LVRGEDGLIR 181 Query: 179 PNI----PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + PP +GVT+ RG LE SN N++ M MI L + F Sbjct: 182 HQLGVEQPPD-----AGVTLVRGMLESSNVNTVEAMVNMIDLARHF 222 >gi|209695761|ref|YP_002263691.1| flagellar basal body rod protein FlgF [Aliivibrio salmonicida LFI1238] gi|208009714|emb|CAQ80018.1| flagellar basal-body rod protein FlgF [Aliivibrio salmonicida LFI1238] Length = 241 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 13/213 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q + ++N++N T GFR ++ + + A + ++ F + + + GS I+T Sbjct: 9 QAMQLSSNNLANVSTTGFRA-DLEQARAMQAYGEGLPSRV-FSMTERPGQNFAQGSVITT 66 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP- 134 G +LD +EGD W ++ G LTR G K+ + G L++ SG + V+ + PI +P Sbjct: 67 GRDLDLTIEGDGWISVMDNTGREGLTRAGNLKIDETGLLMNGSG-HLVMGENNAPITLPL 125 Query: 135 -------QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 KD +V E+G ++ + + L D ++ + N P + Sbjct: 126 PISKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKTD-NRDLFKDTNGLFRSKNPNNAFQ 184 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + VTV +G LE SN N++ EM +I L ++F Sbjct: 185 ADASVTVLKGALEGSNVNAVGEMTNLIDLQRQF 217 >gi|77918761|ref|YP_356576.1| flagellar basal body rod protein [Pelobacter carbinolicus DSM 2380] gi|77544844|gb|ABA88406.1| flagellar basal body rod protein [Pelobacter carbinolicus DSM 2380] Length = 245 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 31/249 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-DIDQKISFVASGKEY 65 + L+ L +Q + T++ N+SN +TVGF+ + F ++ ++ +I ++++ + + Sbjct: 7 VALSGALVRQQLMDTISHNLSNNETVGFKKGQSVFKTMLERVQTGEILERVNLAEIEEGF 66 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ +G + A++G+ +F +E G I TR G ++ +G L++ G +L Sbjct: 67 TDFSQGTLSPSGIQTHMAIQGEGFFKVEDEAGNIYYTRQGNLRLDYEGHLINNQG-MALL 125 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS----QKGKV-IATMGLYSVDMSQGFVRRENSGISP 179 PI + D F V + G I+ QK K+ + T YSV QG G Sbjct: 126 GEDRRPITLTSPD--FTVDDDGTITLEDGQKIKIPLYTFDDYSVLTRQG-------GGQF 176 Query: 180 NIPPTPLEDLSGVTVK-----RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 ++P DL + VK +G LE SN N M EM M+ T+ F + + M Sbjct: 177 SVPKGQERDLE-ILVKDSHIYQGQLERSNVNLMQEMSHMVESTRVFEAC--------QKM 227 Query: 235 LEAIRNIAS 243 L+ +IA+ Sbjct: 228 LKTYHSIAA 236 >gi|118581849|ref|YP_903099.1| flagellar basal body rod protein FlgG [Pelobacter propionicus DSM 2379] gi|118504559|gb|ABL01042.1| flagellar basal-body rod protein FlgG [Pelobacter propionicus DSM 2379] Length = 262 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 108/236 (45%), Gaps = 41/236 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ ++ + VA N++N +T GF+ + F +++ G+ + Q + + Sbjct: 11 GMQAQ---QKNIDVVAHNLANVNTTGFKRSRADFEDLIYQNQRSTGSPATNTTQVPTGIQ 67 Query: 61 SGK----EYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 G +SK G F TG ELD A+EGD +F ++ P G +R G FK D G Sbjct: 68 IGLGTRLASVSKLFTTGDFSQTGNELDIAIEGDGFFQIQMPDGTTAYSRAGAFKKDDQGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM------------- 158 +V+ +G P+L I IP ++G G +S Q G+ T Sbjct: 128 IVTPNGD-PLLP----EIVIPNNTTKIDIGSDGTVSATQSGQTTPTTVGTIQLALFANPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 GL+S M + + +S +P TP +D G TV +G LE SN + EM MI Sbjct: 183 GLFS--MGKNLYKETDSSGTPTT-GTPGQDGLG-TVAQGMLEMSNVSVAEEMVNMI 234 >gi|307721135|ref|YP_003892275.1| flagellar basal-body rod protein FlgG [Sulfurimonas autotrophica DSM 16294] gi|306979228|gb|ADN09263.1| flagellar basal-body rod protein FlgG [Sulfurimonas autotrophica DSM 16294] Length = 262 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/274 (23%), Positives = 128/274 (46%), Gaps = 47/274 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDID 53 M S L ++ ++ T A+N++N +T+GF+ + +F+ E G +D Sbjct: 1 MMQSLYTASTGMLGMQTQIDTTANNIANVNTIGFKKSRAEFADLMYHVMEYAGTSTSDTT 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + + + G + GS T LD A+ G +F +E P G + +++G F Sbjct: 61 KSPTGIEVGLGVRPTAINKIFSEGSLKQTDNNLDLAITGKGFFKMELPDGTEVYSKNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM------ 158 K+ DG++V++ G Y ++ +P P I N+G G ++ Q G+ AT Sbjct: 121 KIDQDGTVVNSDG-YTLIPQIVIP---PDATNI-NIGTDGTVTVIQPGQTQATQIGQIQT 175 Query: 159 -------GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSM 207 GL+++ ++ ++SG P+E + GV T+++GF+E SN + Sbjct: 176 TNFINPAGLHAMG-DNLYIETDSSG-------QPVEGIPGVDGLGTIRQGFVELSNVELV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ +I + +++ + +I +++ ML+ N+ Sbjct: 228 VELTDLITGQRAYDANSKIITTSDE-MLQTTNNL 260 >gi|302037627|ref|YP_003797949.1| flagellar basal-body rod protein FlgF [Candidatus Nitrospira defluvii] gi|300605691|emb|CBK42024.1| Flagellar basal-body rod protein FlgF [Candidatus Nitrospira defluvii] Length = 255 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 32/255 (12%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--------SEVVGAIKNDIDQKISFVA 60 L+ +A E++L+ A+N++N +T GF+ + F S G + + IS Sbjct: 9 LSGAVAQEKQLTVFANNLANVNTAGFKQDQQGFRGLFARASSTGTGVVSGGLSSAISTRP 68 Query: 61 SG-KEYLSKEV---------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 +G E + EV G TG LD A++ D +F +++P G+ TR+G F + Sbjct: 69 AGPSERVFAEVHGVRTAFEPGRIRITGNPLDVAIQSDGFFEVKTPDGVRYTRNGIFSLDS 128 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD---MSQ 167 LV+ G +PV+ I++P + + +G I G I ++ + M Q Sbjct: 129 QRRLVTNLG-HPVMGTKG-EIKVPPGN--IQINAEGAIQVDGTPIGSIKVVEFPENGMPQ 184 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 F G P + P V+ G +E+SN NS+ EM +M+ + + S LI Sbjct: 185 KFAEGLFVGGKPAVSTRP-------QVQSGHIEESNVNSLSEMVKMMQGMRSYESAQKLI 237 Query: 228 DENEKSMLEAIRNIA 242 ++ AI+++ Sbjct: 238 QTMDRMTETAIQDLG 252 >gi|89902478|ref|YP_524949.1| flagellar basal-body rod FlgF [Rhodoferax ferrireducens T118] gi|89347215|gb|ABD71418.1| Flagellar basal-body rod FlgF [Rhodoferax ferrireducens T118] Length = 246 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 11/226 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFVASGKEYLSKEVGS 72 A R + +++N++N T GFR F V ++ D ++ + + Y+ GS Sbjct: 14 AAAHRQAVLSNNLANVSTNGFRAELSTFRAV--PVRGDGASTRVMAIEATAGYVDTP-GS 70 Query: 73 FISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPI 131 TG LD G+AWFA++ G TR G F+V+ +G+LV+ SG VL PI Sbjct: 71 AQRTGRGLDAMTTGNAWFAVQGLDGTESYTRSGSFEVSPEGTLVTNSG-LTVLGDGGAPI 129 Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM----SQGFVRRENSGISPNIPPTPLE 187 IP E+ +G G +S K G+ + + + + R G+ PL Sbjct: 130 SIPTGGEV-TIGFDGNLSAKVGNQPPTGVGRLKLVTPGADDPLNRSEDGLFRATSGEPLP 188 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + V+ G LE SN N++ M MI ++F + L+ E + Sbjct: 189 NDTNARVQVGSLEGSNVNAIEAMVGMIQTARQFETQMRLLQTAESN 234 >gi|78043762|ref|YP_359848.1| flagellar basal-body rod protein FlgG [Carboxydothermus hydrogenoformans Z-2901] gi|77995877|gb|ABB14776.1| flagellar basal-body rod protein FlgG [Carboxydothermus hydrogenoformans Z-2901] Length = 261 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 115/262 (43%), Gaps = 24/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + + ++ VA+N+SN +T+G+++ +V F +++ N S+V Sbjct: 1 MIRSLYSGISGLKSHQYKMDVVANNISNVNTIGYKSSRVNFEDLIYQKTNQSGVYPSYVG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSL 114 G + G STG LD A++G+ +F L+ P +R+G F + DG L Sbjct: 61 LGVNVSGVDTIFTQGGLKSTGRPLDVAIQGNGFFVLKDPVTTRTYYSREGVFYLDKDGYL 120 Query: 115 VSASGKYPVLDMASVPIQI--PQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQ 167 ++ G Y V D+ IQI P+ + G+I + +GL S + Sbjct: 121 INGHG-YRVQDVNGADIQINNPEAVVTLTIQNDGQIKLVRSDGTTEFAGPIGLMSFKNPE 179 Query: 168 GFVRRENSGISPNI--------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 R + S I P TP + G+ V G+LE SN + E +MI +TQ+ Sbjct: 180 TLERIGQNVYSATIDTQTSFSSPVTPGQQGQGILVS-GYLEMSNVDLASEFTEMI-VTQR 237 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + MLE + NI Sbjct: 238 GYQANARVITTSDQMLEELLNI 259 >gi|116626491|ref|YP_828647.1| flagellar basal body rod protein [Candidatus Solibacter usitatus Ellin6076] gi|116229653|gb|ABJ88362.1| flagellar basal body rod protein [Candidatus Solibacter usitatus Ellin6076] Length = 241 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 12/216 (5%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-GKEYL 66 GL A++ + L +A+N++N T G++ + +F + A + D +S + + ++ Sbjct: 11 GLRARM---ESLDLLANNVANASTGGYKADR-EFYSLYTAPEAAGDGSLSTMPVIERPWV 66 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G +TG LD A+ G +F + P G + TR+G F++ DG L +A G YPV D Sbjct: 67 DHSQGILHTTGNALDVAISGKGFFTVNGPSGPLYTRNGSFRLAADGKLTTADG-YPVRDP 125 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI--SPNIPPT 184 + + Q + G ++Q G ++ + + + G ++ ++ P++ Sbjct: 126 QGTALTL-QTTRPVEIARDGTVTQDGAIVGKLEIVDFTSTAGLSKQGSNYFRADPSLKSA 184 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P D S +++G LE SN S +++ + ++F Sbjct: 185 PAADAS---LQQGSLEASNTGSAEAAVRLVSVLRQF 217 >gi|327192294|gb|EGE59259.1| flagellar hook protein FlgE [Rhizobium etli CNPAF512] Length = 483 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 25/123 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++AQ RLSTV+DN++N +TVG++ + FS +V G ++ + Q IS Sbjct: 66 GMSAQ---ANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGVQTSVRQAIS 122 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 E G T + D A+ GD +F +ES G +LTR G F V DG+LV+ Sbjct: 123 -----------EQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVN 171 Query: 117 ASG 119 ++G Sbjct: 172 SAG 174 >gi|171321839|ref|ZP_02910740.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria MEX-5] gi|171092877|gb|EDT38129.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria MEX-5] Length = 252 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 28/242 (11%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVAS--GK 63 A +L+Q+ + VA+N++N T GFR + V G+ + + +AS G Sbjct: 12 ASQSLDQQ-AVVANNLANASTTGFRAQLATYRAVPMNFGDGSTSDPTTTRTYVLASTPGA 70 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 +Y G TG LD A++G W A+++ G TR G V ++G LV+AS P Sbjct: 71 DYAP---GPITRTGNPLDVAVQGAGWLAVQTADGSEAYTRAGNLHVDENGQLVNAS-NLP 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRREN 174 V+ PI +P E+ +G+ G +S ++ M L + D + + R N Sbjct: 127 VIGNGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT--LARGN 182 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENE 231 G+ P + V V LE SN N + M MI + F + LI D+NE Sbjct: 183 DGLFRTADGNPADSDPSVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNE 242 Query: 232 KS 233 +S Sbjct: 243 QS 244 >gi|330875986|gb|EGH10135.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967093|gb|EGH67353.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. actinidiae str. M302091] Length = 262 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 123/267 (46%), Gaps = 48/267 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GLAAQ + L+T+++N++N T GF++ + +F +++ IK Sbjct: 11 GLAAQ---DTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G I +RDG F + Sbjct: 68 LGTGVRIVGTQKNFTA---GSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------------QKGKV 154 G +V+A+G L+ A I +PQ + F VG+ G +S Q Sbjct: 125 TGQIVTATGY--ALEPA---IVVPQNAQTFTVGQDGTVSVTLAGATATSQVIGNIQTADF 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 I GL ++ + ++ +SG +P I L L G T++ LE+SN +++ E+ MI Sbjct: 180 INPAGLQAIGGNL-YLETASSG-APQIGTPGLNGL-GPTLQN-TLENSNVSTVEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 TTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|114706771|ref|ZP_01439671.1| flagellar basal-body rod protein [Fulvimarina pelagi HTCC2506] gi|114537719|gb|EAU40843.1| flagellar basal-body rod protein [Fulvimarina pelagi HTCC2506] Length = 260 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 120/258 (46%), Gaps = 42/258 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE---- 69 A E + +A+N++N +T GF+ + +F++++ +++ A+G E + E Sbjct: 13 AQETNVEVIANNIANVNTTGFKRARAEFTDLL----YQVERAKGVAAAGAEGVVPEGAQL 68 Query: 70 --------------VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSL 114 G+ TG +LD AL G+ WF ++ P G I TRDG F +G + Sbjct: 69 GLGVRLAAIRNVHLQGALKETGNKLDLALNGEGWFQIQGPGGAIRYTRDGAFNTNAEGQI 128 Query: 115 VSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKV-IATM----GLYSVD 164 V+ G Y V +VP I + + +++ E GE+ G++ +AT GL++ Sbjct: 129 VTLDG-YLVDPELTVPANTSEIVVNEAGQVYARVE-GELQDVGQLTLATFANNAGLHA-- 184 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF---N 221 G + E + P + GV V +G+LEDSN + + E+ ++I + + + Sbjct: 185 -EGGNLFSETVASGAPVVGVPGDPGYGV-VHQGYLEDSNVDPVKEISELISAQRAYEMNS 242 Query: 222 SITTLIDENEKSMLEAIR 239 I + DE + + IR Sbjct: 243 KIISAADEMASVVSKGIR 260 >gi|323703191|ref|ZP_08114844.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] gi|323531850|gb|EGB21736.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] Length = 260 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 31/237 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA------- 60 G + A + +L T+ +N++N +T ++ +++F+E++ D Q I + Sbjct: 9 GASGMRAFQMKLDTIGNNIANINTTAYKRSRIEFAEMMRQAMGD--QGIPAASDPRPAGG 66 Query: 61 SGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSL 114 SG + +S E G + TG +LD A+EG+ +F + SP TRDG F + ++G + Sbjct: 67 SGVKMVSVARLVEQGDLLQTGRDLDLAIEGEGYFKVISPEDDREYYTRDGCFYLNNEGVV 126 Query: 115 VSASG-----KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 V+A+G + + D V I+I +K ++ +G+ I + LY+ Sbjct: 127 VNANGYKLEPEINLKDGNYVAIRIDEKGKVQGKTAEGDFQD----IDEITLYTFPAPANL 182 Query: 170 VRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + N+ SP TP ED G+ +++G+LE SN + EM MI + + Sbjct: 183 LDEGNNLYSPTTASGEATEGTPGEDGVGL-IRQGYLERSNVDLAQEMLGMIEAQRAY 238 >gi|121602345|ref|YP_989400.1| flagellar basal body rod protein FlgG [Bartonella bacilliformis KC583] gi|120614522|gb|ABM45123.1| flagellar basal-body rod protein FlgG [Bartonella bacilliformis KC583] Length = 264 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 119/252 (47%), Gaps = 36/252 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI--SF 58 G+AAQ + L +A+N++N +T G++ + +F+++ VG + N ++Q I Sbjct: 12 GMAAQ---QTNLDVIANNLANINTTGYKRARAEFADLMYVTDRAVG-VPNMMNQAIVPEG 67 Query: 59 VASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 V G + V G+FI TG LD A+ G+ WF ++ P G + TR G F +++ Sbjct: 68 VMVGMGVRTAAVRTVNTQGAFIQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSET 127 Query: 112 GSLVSASGKYPVLDMASVPIQ------IPQKDEIFNVGEKGEISQKGKV-----IATMGL 160 G +V+ G V ++PI P + E+ + + G++ + +GL Sbjct: 128 GQVVTLDGNV-VQPAITIPIGSKSITVSPDGTVFYKPAEEADPVEAGRLNLVNFVNEVGL 186 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + + RE +P P ED G ++ + LE SN + + E+ ++I + + Sbjct: 187 EPVGDN---LFRETPASGAPVPGNPKEDGYG-SIMQATLEASNVDPVKEITELITAQRSY 242 Query: 221 NSITTLIDENEK 232 + +I +++ Sbjct: 243 EMTSKVIQASDE 254 >gi|323704841|ref|ZP_08116418.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium xylanolyticum LX-11] gi|323535767|gb|EGB25541.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium xylanolyticum LX-11] Length = 266 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 28/233 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A + + +++N++N +T F+ + +F +++ G ++ ++ V Sbjct: 14 AQQLNVDVISNNLANVNTTAFKRDRAEFQDLIYQTLQTEDVNGGQGKPVNMQVG-VGVRP 72 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD---GSLVSA 117 + K+ GS T LD AL+G+ +FA+ P G TRDG FK++ D +L +A Sbjct: 73 SAIVKDFSEGSLQETDNPLDVALDGEGFFAVLGPDGNTYYTRDGSFKLSVDQNTATLTTA 132 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRR 172 G YPVLD PI + ++ G IS K + +AT+G+Y+ G + + Sbjct: 133 DG-YPVLDDGGNPITFDSTQKDISISPLGVISVKNSDGTQQDVATLGIYNFQNPDGLLDK 191 Query: 173 ENS---GISPNIPPTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ + + P +D G V++GFLE SN + EM MI + + Sbjct: 192 GDNLYEATAASGDPGTRDDFQGRMGNVRQGFLETSNVQVVNEMVNMIAAQRAY 244 >gi|319764540|ref|YP_004128477.1| flagellar basal-body rod protein flgf [Alicycliphilus denitrificans BC] gi|317119101|gb|ADV01590.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans BC] Length = 246 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 9/223 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A R + +A+N++N T GFR F V ++ F + G Sbjct: 14 AAAHRQAVLANNLANVSTNGFRAEMSSFRSV--PLQGSGSTTRVFALEATSGHVETPGPV 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G+AWFA++ G TR G F+VT+ G LV+ +G PVL PI Sbjct: 72 QRTGRNLDAMAAGNAWFAVQGLDGTEAYTRAGSFEVTEAGQLVTPTG-LPVLSDGGAPIT 130 Query: 133 IPQKDEIFNVGEKGEISQK--GKVIATMGL--YSVDMSQGFVRRENSGISPNIPPTPLED 188 PQ E+ +G G ++ + G+ T+G + ++R + G+ P+ Sbjct: 131 APQGAEL-TLGADGTVTARVPGQQPQTVGRLKLATPAQDDPLKRGDDGLFRTASGEPMAS 189 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G LE SN N + M MI ++F L+ E Sbjct: 190 DPAARLLAGALEGSNVNPVESMVGMIAAARQFEQQMRLLQTAE 232 >gi|320530444|ref|ZP_08031502.1| putative flagellar basal body rod protein FlgG [Selenomonas artemidis F0399] gi|320137277|gb|EFW29201.1| putative flagellar basal body rod protein FlgG [Selenomonas artemidis F0399] Length = 266 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 3/172 (1%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ +TG DFA+ G+ +F +++P+G TRDG F + G L + G+ VL P Sbjct: 95 GALQTTGNTYDFAISGEGYFVIDTPQGPRYTRDGSFYRSASGQLQNVRGQ-AVLSAQGRP 153 Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 I IP NV G I IA +G D +++ ++ P P + Sbjct: 154 INIPADATRVNVSGDGRIYVGNTEIAQLGFVQFDAPDAVIKQGDNLYRPQEGARPTQATG 213 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 T+++G LE SN + + EM ++I+ + + + + + + + +A+ ++ Sbjct: 214 --TIEQGLLEMSNTSIVTEMVELINNYRVYEAGSRAVQTQDSLLDKAVNDVG 263 >gi|262276416|ref|ZP_06054225.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] gi|262220224|gb|EEY71540.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] Length = 249 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 11/224 (4%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q L A+N++N T GFR ++ + + A + ++ F + + S GS I+T Sbjct: 17 QALQLRANNLANASTTGFRA-DLEQARSMQAYGEGLPTRV-FNMTERPGYSFAQGSTITT 74 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G ELD A++GD W A+ G TR G KV G L + G + +L PI +P Sbjct: 75 GRELDVAIKGDGWLAVLDGTGQEGYTRVGNLKVDQTGMLQNGHG-HLILGEGGAPIFLPL 133 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDM-------SQGFVRRENSGISPNIPPTPLED 188 +G G +S + + VD ++ + +N P P T E Sbjct: 134 PVSKIEIGSDGTVSVLPQGAPPEAMEEVDRIKLVRPNNEELFKDKNGVFKPVNPGTIFEA 193 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 +GV++ G LE SN N + EM +I L + F L+ E+ Sbjct: 194 DAGVSLLTGALEGSNVNPINEMTGLIDLQRHFEMQVKLMKTAEE 237 >gi|258621050|ref|ZP_05716084.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM573] gi|258625278|ref|ZP_05720186.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM603] gi|262166281|ref|ZP_06034018.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM223] gi|262170826|ref|ZP_06038504.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451] gi|258582451|gb|EEW07292.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM603] gi|258586438|gb|EEW11153.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM573] gi|261891902|gb|EEY37888.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451] gi|262025997|gb|EEY44665.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM223] Length = 249 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 37/225 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------ 70 Q + A+N++N T GFR D+ Q S A G E L V Sbjct: 17 QAMQLRANNLANVSTTGFRA--------------DLAQARSMQAYG-EGLPTRVFSMTER 61 Query: 71 -------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 GS I+TG +LD ++G+ W ++ G LTR+G ++ + G L++ +G +P Sbjct: 62 PGHNFAQGSVITTGRDLDITIQGEGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNG-HP 120 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-------SQGFVRRENS 175 VL PI +P +G G IS + + + VD Q + N Sbjct: 121 VLGETGAPITLPVPLTKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRLNDQALFKDVNG 180 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P T E + V + G LE SN N++ EM +I L ++F Sbjct: 181 LFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQF 225 >gi|84388092|ref|ZP_00990988.1| polar flagellar FlgF [Vibrio splendidus 12B01] gi|84377159|gb|EAP94029.1| polar flagellar FlgF [Vibrio splendidus 12B01] Length = 249 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 13/213 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q L A+N++N T GFR + + + A + ++ F + + + GS ++T Sbjct: 17 QALQLRANNLANVSTTGFRA-DLAQARSMQAYGEGMPTRV-FSMTERPGHNFAQGSVVTT 74 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G +LD ++GD W ++ G LTR+G KV +G L +ASG + VL PI +P Sbjct: 75 GRDLDVTIQGDGWISVMDNTGREGLTRNGNLKVDQNGLLTNASG-HLVLGENDAPITLPI 133 Query: 136 KDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 +G G IS ++ ++ + L D +Q + N P E Sbjct: 134 PISKVEIGTDGTISVIPQGAPAEELAIVDRIKLVRPD-NQSLFKDTNGLFRSKNPDQAYE 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + VT+ +G +E SN N++ EM +I L ++F Sbjct: 193 ADAAVTLLKGAIEGSNVNAVGEMTSLIDLQRQF 225 >gi|124516714|gb|EAY58222.1| putative flagellar basal body rod protein [Leptospirillum rubarum] Length = 267 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 31/247 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQK-- 55 Q F + AQ A EQ + + +N++N +T GF+ +V F + K DQ Sbjct: 3 QAEFALVSGAQ-AQEQLMDVLTNNLANVNTPGFKRDRVTFRTYLPHREWLHKTPSDQPGF 61 Query: 56 ---------ISFVASGKE---------YLSKEVGSFISTGTELDFALEGDAWFALESPRG 97 + +GK+ ++ GSF STG LD A++G+ +F + +PRG Sbjct: 62 RMTPWGEFPTPWGMAGKDVPHAGVDGIHVGYAQGSFRSTGNPLDVAIKGEGFFRILTPRG 121 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK-DEIFNVGEKGEISQKGKVIA 156 +L+R+GRF + G LV+ G Y VL I++P+ V G + + +V+ Sbjct: 122 EVLSRNGRFTLDRGGRLVTHEG-YGVLGEDGKNIRLPESVPGGVRVKADGTVLKGNRVMG 180 Query: 157 TMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + + + G + + G+ + P+ D V G E SN N +EM +MI Sbjct: 181 RLAVVVPENGTGHLAKVGDGLFMADGKTAPVADPD---VLAGGFESSNVNGTFEMVRMIE 237 Query: 216 LTQKFNS 222 + F + Sbjct: 238 AMRSFET 244 >gi|229542504|ref|ZP_04431564.1| flagellar basal-body rod protein FlgF [Bacillus coagulans 36D1] gi|229326924|gb|EEN92599.1| flagellar basal-body rod protein FlgF [Bacillus coagulans 36D1] Length = 262 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 119/254 (46%), Gaps = 30/254 (11%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---------ISFVASGK 63 +A +++ +A+N+SN DT G++T + + + +D+ + +A+G Sbjct: 13 IAQQRKTDLLANNLSNADTPGYKTDQSSIRSFPKMLLSYMDKNGTTGEVVKSVGSLATGV 72 Query: 64 EYLSKEV-----GSFISTGTELDFAL------EGDAWFALESPRGI-ILTRDGRFKVTDD 111 Y+ + + G TG D A+ EG +F ++ G + TR+G F V + Sbjct: 73 -YMQETLPLFKQGDLEETGNRTDLAIFDQASPEGSLFFRIDDGNGHEVYTRNGNFTVNPE 131 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL-YSVDMSQGFV 170 G L +ASG Y VLD I+ D F+V G +++ G+ T+GL Y+ + +Q + Sbjct: 132 GYLTTASGHY-VLDENGGRIRTGGTD--FSVDAAGAVTENGRYAGTIGLAYAQNPAQ--L 186 Query: 171 RRENSGIS--PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + G+ N P +G +K+GFLE SN + M M+ + F + ++ Sbjct: 187 EKTGDGLYTLANNGALPAAGQNGFQIKQGFLESSNVDETKTMTDMMSAYRSFEANQKVLQ 246 Query: 229 ENEKSMLEAIRNIA 242 + S+ +A+ ++ Sbjct: 247 AYDASLGKAVNDVG 260 >gi|126734107|ref|ZP_01749854.1| flagellar basal-body rod protein FlgG [Roseobacter sp. CCS2] gi|126716973|gb|EBA13837.1| flagellar basal-body rod protein FlgG [Roseobacter sp. CCS2] Length = 261 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 127/264 (48%), Gaps = 38/264 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIK------- 49 + I A A + R+ +++N++N +T G+ + +F+++ G I Sbjct: 3 ALKIAAAGMTAQQMRVEVISNNLANMNTTGYNPRRAEFADLHYQQLVRPGTINASDGTVL 62 Query: 50 -NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 I + S + + G+ +TG +LD A+EGD + + P G TRDG K Sbjct: 63 PTGIQLGLGVRPSAISVMLSQ-GALGATGGDLDLAIEGDGYLEVTLPSGASAYTRDGALK 121 Query: 108 VTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFN--VGE-----KGEISQKGKVI 155 +T DG +V++ G YPV+ +VP + I + E+F + E G+ S G Sbjct: 122 LTGDGLIVTSDG-YPVVPDLTVPRDTRSLSINAEGEVFGYFIDEIQPQLLGQFSLAGFTN 180 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A GL ++ S F+ SG P++ TP ED GV +++G+LEDS+ + + E+ +I Sbjct: 181 AK-GLEAIG-SNLFLETPASG--PSVVGTPGEDGLGV-LRQGYLEDSSVDPVREVTDLIE 235 Query: 216 LTQKF---NSITTLIDENEKSMLE 236 + + + + T D+ +M++ Sbjct: 236 AQRGYELNSKVITAADQMLSAMVQ 259 >gi|95929873|ref|ZP_01312614.1| flagellar basal body rod protein [Desulfuromonas acetoxidans DSM 684] gi|95134169|gb|EAT15827.1| flagellar basal body rod protein [Desulfuromonas acetoxidans DSM 684] Length = 242 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 19/221 (8%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ---KISFVASGKEY 65 L+ +A Q + V +N+SN +T+G++ +V+FS V+ + K + S+V K Sbjct: 9 LSGAVARMQTVDVVTNNLSNANTLGYKKDRVQFSAVLDSAKQNQQAGGVNYSYVEVAKTD 68 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGKYPV 123 S+ G I T E D A+ G+ +F + +P I TR G DG+L++ +G++ V Sbjct: 69 YSQ--GVLIDTRNEYDVAINGNGFFKVRNPDDGEIYFTRLGALDREPDGTLITRTGEF-V 125 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD----MSQGFVRRENSGISP 179 L A+ I +P+ D F + E+G I V+ + L D + QG R G Sbjct: 126 LSPANETIVLPEGD--FVIDERGRILGNEGVVDELALVDPDPDLLIKQGNGRYSYDGDMR 183 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +P + + V +G LE SN ++ E M+ + F Sbjct: 184 VVPNS-----TDSQVMQGHLEQSNVKAIEETTLMMTSLRAF 219 >gi|121596118|ref|YP_988014.1| flagellar basal-body rod protein FlgF [Acidovorax sp. JS42] gi|222112273|ref|YP_002554537.1| flagellar basal-body rod protein flgf [Acidovorax ebreus TPSY] gi|120608198|gb|ABM43938.1| flagellar basal-body rod protein FlgF [Acidovorax sp. JS42] gi|221731717|gb|ACM34537.1| flagellar basal-body rod protein FlgF [Acidovorax ebreus TPSY] Length = 246 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 11/224 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A R + +A+N++N T GFR F V ++ F G Sbjct: 14 AAAHRQAVLANNLANASTTGFRAEMSNFRSV--PLQGGGSTTRVFALEATSGHVDTPGPA 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 +TG LD G+AWFA++ G+ TR G F+VT G LV+++G VL PI Sbjct: 72 QTTGRPLDAMAVGNAWFAVQGLDGVETYTRAGSFQVTAAGQLVTSTGMA-VLSDGGAPID 130 Query: 133 IPQKDEIFNVGEKGEISQK--GKV---IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 +P E+ +G G I+ + G+V +A + L + + ++R + G+ PL Sbjct: 131 VPPNAEV-TLGADGTITARLAGEVPQPVARLKL-ATPAADNPLKRGDDGLFRTAGGDPLP 188 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 ++ G LE SN N + M MI ++F L+ E Sbjct: 189 ADPNARLRSGVLEGSNVNPVECMVGMIAAARQFEQQMRLLQTAE 232 >gi|329898287|ref|ZP_08272370.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC3088] gi|328920852|gb|EGG28295.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC3088] Length = 261 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 GL AQ + R++ +A+N++N +TVGF+ + F +++ A I Sbjct: 11 GLTAQ---QMRMTVIANNLANVNTVGFKKDRAVFEDLLYQNVRQPGASADAQTIAPTGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ IST LD A+ G +F ++ G TRDG FK+ D G Sbjct: 68 LGTGTRIIATEKIHRQGNMISTENALDLAIAGRGFFQIQQADGTFAYTRDGSFKLNDQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 +++ASG+ V I +P VG G + Q + I Sbjct: 128 VITASGQLMV-----PAITVPVNSASLTVGRDGTVDAELEAGAGKVTLGQIQLARFINEA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 GL S+ + + RE + P P +SG+ + +G LE SN N + EM MI Sbjct: 183 GLQSIGRN---LYRETTASGPVEVGVP--GISGIGELTQGSLEASNVNVVEEMVNMIETQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|54297183|ref|YP_123552.1| flagellar basal body rod protein FlgF [Legionella pneumophila str. Paris] gi|53750968|emb|CAH12379.1| flagellar biosynthesis protein FlgF [Legionella pneumophila str. Paris] Length = 248 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 32/243 (13%) Query: 17 QRLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 +R +A+N++N +T GF+ + + + A N+ SF+ + G I Sbjct: 17 KRQEMIANNLANINTPGFKADLYQAQTMYMNNANGNNQFNMHSFITQNTNGVDTSPGEII 76 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG +LD A++GD W A++ +G TR G ++ +G L++ASGK + D PI I Sbjct: 77 TTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNANGQLITASGKVVLGDGG--PISI 134 Query: 134 PQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMS------QGFVRRENSGISP 179 P I +G G IS + ++ + L ++D + +G ++ + + Sbjct: 135 PPAQSI-EIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNNIYKNDEGLIQLRSGAATT 193 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLE 236 N S + ++ G LE SN N++ +M MI ++F++ + + +D+N + + + Sbjct: 194 N---------SNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLSTVDDNGQKLAQ 244 Query: 237 AIR 239 ++ Sbjct: 245 LLQ 247 >gi|296122946|ref|YP_003630724.1| hypothetical protein Plim_2702 [Planctomyces limnophilus DSM 3776] gi|296015286|gb|ADG68525.1| protein of unknown function DUF1078 domain protein [Planctomyces limnophilus DSM 3776] Length = 256 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 112/251 (44%), Gaps = 17/251 (6%) Query: 5 FNIGLAAQLALEQ--RLSTVADNMSNTDTVGFR----TIKVKFSEVVGA-----IKNDID 53 + + L+AQ A Q R +A+N++N T F+ + F V + ID Sbjct: 3 YGLYLSAQGAESQAMRQGVLANNLANVGTNAFKPDIAVFRSYFPYDVAHQEPQRAPDTID 62 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + VA GS TG D AL GD ++ L+ +LTRDG F++ DG Sbjct: 63 LETGGVALEGTITDFSQGSLKPTGKSTDAALLGDGFYQLKMGNETLLTRDGSFELDADGQ 122 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--VIATMGLYSVDMSQGFVR 171 LV A PVLD I IP + +G+ G+IS G ++ + +V + Sbjct: 123 LVHAGTGAPVLDPDGSEIVIPPEMIDLQIGDDGQISGVGPNGIVLPISQLAVVVPTRLTE 182 Query: 172 RENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI--- 227 + G P+ + T V++GF+E SNA+ M ++I +++ F S ++ Sbjct: 183 LQKRGDGMYSTKLPVAEAPPETRVRQGFVEASNADPMQGTLELIEVSRGFESNVNMMRMQ 242 Query: 228 DENEKSMLEAI 238 DE +L+AI Sbjct: 243 DEMLGRLLQAI 253 >gi|118588710|ref|ZP_01546118.1| Flagellar basal body rod protein [Stappia aggregata IAM 12614] gi|118438696|gb|EAV45329.1| Flagellar basal body rod protein [Stappia aggregata IAM 12614] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 12/227 (5%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 +A+NM+N +T GF++ + F+E V G+ D+ IS+V G T Sbjct: 2 IANNMANINTSGFKSQNLHFAEYVMPVADGSAFEPQDRAISYVDMFTTRTDFTHGPIKMT 61 Query: 77 GTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G E D +L D +FA++ P G TR G F++ G L+SA G + D PI Sbjct: 62 GNEFDLSLNSDGFFAVQMPDGTEAYTRSGAFRLDSTGQLISADGSPVMTDQG--PISFNA 119 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK 195 +D + + G IS + + + + + + + N+ + P P +++ V Sbjct: 120 EDGRVEIAQDGTISTRLGIRGRIKVVDFEDPRTLEKIGNT-MFKGEDPIPAQEVRMV--- 175 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +G +E SN + E+ ++I +T+ ++S ++ + ++ +AI + Sbjct: 176 QGAVEGSNVYGITEVTRLIEVTRAYDSTAKIVKDLDELRQQAISTLG 222 >gi|115353117|ref|YP_774956.1| flagellar basal body rod protein FlgF [Burkholderia ambifaria AMMD] gi|170703097|ref|ZP_02893917.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria IOP40-10] gi|115283105|gb|ABI88622.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria AMMD] gi|170131994|gb|EDT00502.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria IOP40-10] Length = 252 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 28/242 (11%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVAS--GK 63 A +L+Q+ + VA+N++N T GFR + V G+ + + +AS G Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSTSDPTTTRTYVLASTPGA 70 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 +Y G TG LD A++G W A+++ G TR G V ++G LV+AS P Sbjct: 71 DYAP---GPITRTGNPLDVAVQGAGWLAVQTADGSEAYTRAGNLHVDENGQLVNAS-NLP 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRREN 174 V+ PI +P E+ +G+ G +S ++ M L + D + + R N Sbjct: 127 VIGNGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT--LARGN 182 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENE 231 G+ P + V V LE SN N + M MI + F + LI D+NE Sbjct: 183 DGLFRTADGNPADSDPSVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNE 242 Query: 232 KS 233 +S Sbjct: 243 QS 244 >gi|84502378|ref|ZP_01000514.1| putative flagellar basal-body rod protein flgF [Oceanicola batsensis HTCC2597] gi|84389190|gb|EAQ01987.1| putative flagellar basal-body rod protein flgF [Oceanicola batsensis HTCC2597] Length = 250 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 20/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + + L+ A+++ L A+N++N +T GF+ ++ F+ + D Q++ Sbjct: 1 MDNTTYVALSLARAMKRDLDVTANNIANANTAGFKAERIIFASY---LHQDEGQRVGEGT 57 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV YL K G+ T LD A++G+A+ + P G RDG+ + DG LV Sbjct: 58 NFVVDQGSYLDKTQGAMTRTDNPLDLAIKGEAFLSYRMPGGQTAYGRDGQLALDRDGYLV 117 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRREN 174 + SG VLD I IP + G I S + V+ +GL+ + Q ++R N Sbjct: 118 TLSGAR-VLDEGGGDIAIPPGAGKILISPDGTIASDETGVLGRVGLFDLPDVQSYIRLGN 176 Query: 175 SGISPNIPPTPLEDLS----GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI--- 227 S + +PP E + G + +G +E SN + + E+ +++ + + ++ T L+ Sbjct: 177 SML---VPPEGREGQATAAEGSEILQGQIELSNVSPVAEVTRLMMIQKAYDRATKLMSTE 233 Query: 228 DENEKSMLEAIRNIA 242 DE K ML + + A Sbjct: 234 DELRKDMLRRLGSAA 248 >gi|163794151|ref|ZP_02188124.1| hypothetical protein BAL199_02019 [alpha proteobacterium BAL199] gi|159180765|gb|EDP65284.1| hypothetical protein BAL199_02019 [alpha proteobacterium BAL199] Length = 240 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I L+ Q AL +++S VA+N++N +T F+ + + A K Q + FV Sbjct: 1 MDNPVYIALSRQTALRRQMSVVANNVANANTTAFKREVMIYQTY--AQKAPFTQTMDFVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G+ T D + G +F ++ G TR+G F + LV+ G Sbjct: 59 DQGTATDQHQGNLKVTHNTFDMGINGPGYFQVDDGSGTKYTRNGTFTLDQQNRLVTQDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P+LD PI IP V + G I ++I +G+ ++ + +S + Sbjct: 119 -PILDTQGNPILIPSGGSDLTVSKDGVIRLGDQLIGRLGIVEFADNRILQKVRDSLFETD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P ++ V +G +E SN N++ EM MI + + + + TL+D +K I+ Sbjct: 178 QVPEPAQESE---VMQGMIETSNVNAITEMTSMIDVHRAYEAAKTLLDREDKRQDTIIQR 234 Query: 241 IA 242 +A Sbjct: 235 LA 236 >gi|261211321|ref|ZP_05925609.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC341] gi|260839276|gb|EEX65902.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC341] Length = 249 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 37/225 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------ 70 Q + A+N++N T GFR D+ Q S A G E L V Sbjct: 17 QAMQLRANNLANVSTTGFRA--------------DLAQARSMQAYG-EGLPTRVFSMTER 61 Query: 71 -------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 GS I+TG +LD ++G+ W ++ G LTR+G ++ + G L++ +G +P Sbjct: 62 PGNNFAQGSVITTGRDLDVTIQGEGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNG-HP 120 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-------SQGFVRRENS 175 VL PI +P +G G IS + + + VD Q + N Sbjct: 121 VLGETGAPITLPVPLNKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRLNDQSLFKDVNG 180 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P T E + V + G LE SN N++ EM +I L ++F Sbjct: 181 LFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQF 225 >gi|186477698|ref|YP_001859168.1| flagellar basal body rod protein FlgF [Burkholderia phymatum STM815] gi|184194157|gb|ACC72122.1| flagellar basal-body rod protein FlgF [Burkholderia phymatum STM815] Length = 252 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 22/239 (9%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQKISFVASGKE 64 A ALEQ+ + VA+N++NT T GF+ F V A I++D + +FV S Sbjct: 12 ATQALEQQ-AVVANNLANTSTTGFKAQLATFRAVPMAFGDGSTIQDDTTR--TFVLSSTP 68 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 G TG LD A++G W ++ +P G TR G V ++G LV+A+ + Sbjct: 69 GADYTPGPIQQTGNPLDVAIQGPGWLSVLTPDGEEAYTRAGNLHVDENGQLVTANN---L 125 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYS----VDMSQGFVRRENSGI 177 + +G+ G +S G T+ L V+ + G ++R + G+ Sbjct: 126 PVVGGGGPVAVPPGAQVTIGKDGTVSALMPGDPATTIALVDQLKLVNPAPGALKRGDDGL 185 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V G LE SN N + M MI ++F T +I D+NE+S Sbjct: 186 FHTNDGNPADADPAVVVAAGALEGSNVNPVSAMVSMITNARQFQMQTKMIESADQNEQS 244 >gi|224417700|ref|ZP_03655706.1| flagellar basal-body rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253827049|ref|ZP_04869934.1| flagellar distal rod protein FlgF [Helicobacter canadensis MIT 98-5491] gi|313141243|ref|ZP_07803436.1| flagellar basal-body rod protein flgg [Helicobacter canadensis MIT 98-5491] gi|253510455|gb|EES89114.1| flagellar distal rod protein FlgF [Helicobacter canadensis MIT 98-5491] gi|313130274|gb|EFR47891.1| flagellar basal-body rod protein flgg [Helicobacter canadensis MIT 98-5491] Length = 277 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 53/277 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG----- 62 G+ Q+ RL +A+N++N +T GF+ V V+G +Q F+ Sbjct: 11 GMVTQI---NRLDVIANNIANANTTGFKRDDV----VIGDFMRLYEQHKEFLPIKDQTKD 63 Query: 63 ----------------KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGR 105 +E+ + VG T DFAL +A+F +E+P GI TRDG Sbjct: 64 AAKFYNRSLNRVPQIVEEFTDRSVGGITQTDNTFDFALSRENAYFMIETPEGIRFTRDGS 123 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F + +G LV+ G Y VL I+ PQ EI + G + E+ + G + L + ++ Sbjct: 124 FVLNQEGRLVNKEG-YAVLPREY--IESPQYIEIID-GFQIEVDKDGN-LYNRSLNNEEL 178 Query: 166 SQ-------GFVRREN----SGISPNIPPTPLEDLSGV-------TVKRGFLEDSNANSM 207 ++ V EN I N+ P E ++ + V++G+LE SN N + Sbjct: 179 NETILTANIAVVSFENPKFLQKIGDNLYKYPNERMNEMEVLERSGAVRQGYLEKSNINVV 238 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 YEM +I + + + ++ + + EAI IA+ Sbjct: 239 YEMTGLIETNRLVEAYSKVLKTHMDDLNTEAITRIAA 275 >gi|319403961|emb|CBI77549.1| Flagellar basal-body rod protein flgG [Bartonella rochalimae ATCC BAA-1498] gi|319406976|emb|CBI80613.1| Flagellar basal-body rod protein flgG [Bartonella sp. 1-1C] Length = 264 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 110/240 (45%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKI----S 57 G+AAQ + L +A+NM+N +T GF+ + +F++++ + N ++Q + + Sbjct: 12 GMAAQ---QTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGVPNMLNQAVIPEGA 68 Query: 58 FVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + G + G+F+ TG LD A+ G+ WF ++ P G + TR G F +++ G Sbjct: 69 MIGMGVRTAAVRTINTQGAFVQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETG 128 Query: 113 SLVSASGKYPVLDMASVPIQ------------IPQKDEIFNVGEKGEISQKGKVIATMGL 160 +V+ G V + ++PI Q D N E G + + +GL Sbjct: 129 QIVTLEGNL-VQPVITIPIGSKNVTVSPDGTVYYQTDTDPNAVEAGRF-RLVNFVNEVGL 186 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + R + +P +P P ED G ++ + LE SN + + EM ++I + + Sbjct: 187 EPI--GDNLFRETQASGAP-VPGDPKEDGYG-SIMQAMLEASNVDPVKEMTELIAAQRSY 242 >gi|330899406|gb|EGH30825.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. japonica str. M301072PT] Length = 262 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 48/267 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GLAAQ + L+T+++N++N T GF++ + +F +++ IK Sbjct: 11 GLAAQ---DTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K++ + GS +T LD A+ G +F + P G I +RDG F + Sbjct: 68 LGTGVRIVGTQKKFTA---GSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTFHLDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------------QKGKV 154 +G +V+A+G L+ A I +PQ + F VG+ G +S Q Sbjct: 125 NGQIVTANGY--ALEPA---IVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADF 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 I GL + M S +P I L L G T++ LE+SN +++ E+ MI Sbjct: 180 INPAGLQA--MGGNLYLETGSSGAPQIGTPGLNGL-GPTLQN-TLENSNVSTVEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 TTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|46578927|ref|YP_009735.1| flagellar basal-body rod protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603472|ref|YP_967872.1| hypothetical protein Dvul_2429 [Desulfovibrio vulgaris DP4] gi|46448339|gb|AAS94994.1| flagellar basal-body rod protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563701|gb|ABM29445.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] gi|311232785|gb|ADP85639.1| flagellar basal-body rod protein FlgF [Desulfovibrio vulgaris RCH1] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFV 59 MQ S GL L E RL+ +A+N++N +T G++ + F + + +D I + ++ V Sbjct: 1 MQDSMLSGLFGALTTEHRLNNIANNLANVNTNGYKRDVLAFKDTMALFAHDEIMEPMANV 60 Query: 60 ASGKEYLSK---------------EVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 S K + GSF T LD A+ G+ +F + +P G TR+G Sbjct: 61 RSKKLFPEPLHVARPRIAVARTDFSQGSFHYTSDPLDLAISGNGFFKVRTPEGEFYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F+ T DG LV+ G +PVL I +PQ + V G I+ G + + + +V Sbjct: 121 HFRQTSDGQLVTMQG-WPVLSEGG-DINLPQGKNL-QVASDGRIAVDGVDVGQLQVVTVS 177 Query: 165 MSQG-------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 +G R + +P P V V +G++E SN + EM MI Sbjct: 178 DLEGLEKLGGNLYRLREGSTAGEVPVGP-----DVIVSQGYIETSNVEVVNEMVNMIETQ 232 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 ++F + ++ ++ +AI I Sbjct: 233 RQFEAYQKVMQTSDTVDRDAITKIG 257 >gi|138896904|ref|YP_001127357.1| flagellar hook-basal body protein [Geobacillus thermodenitrificans NG80-2] gi|134268417|gb|ABO68612.1| Flagellar hook-basal body protein [Geobacillus thermodenitrificans NG80-2] Length = 273 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 43/266 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVASGKEY------ 65 AL+QRL T++ N+ N++T GF+ + F+E++ + + D+ +G Y Sbjct: 14 ALQQRLDTLSHNIVNSNTTGFKRREASFAELLTQQVDRLPDDEAPRQTPAGVRYGNGAGL 73 Query: 66 ----LSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTRDGRFKVTDDG--- 112 L G TG LDFA + WF + G I TR G F +T G Sbjct: 74 ASTMLVTAQGPLTETGRALDFAFTAANQWFRVRVTDGNGVATIGYTRAGNFSLTPIGDRL 133 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSVDMSQGF 169 +LV++ G+ PVLD + PI++P F + G ++ G V+A V++ Sbjct: 134 ALVTSDGR-PVLDETNAPIELPAHATGFQLSPTGTLTATDANGAVVA-----RVNLGVTV 187 Query: 170 VRREN--SGISPNI-----PPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIHLT 217 +RR + N+ P ++L+G + +K+G LE SN + E+ ++ T Sbjct: 188 IRRPQLLEALGDNVFTLPTAPGATQELNGNLRSQIAMKQGALEQSNVDLGEELIGLMATT 247 Query: 218 QKFNSITTLIDENEKSMLEAIRNIAS 243 + + I +E+ ML I N+ S Sbjct: 248 RAYQLNARAISISEQ-MLGLINNLRS 272 >gi|45657204|ref|YP_001290.1| flagellar basal body rod protein FlgG [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600442|gb|AAS69927.1| FlgG [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 265 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 37/268 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S +A + + T+++N++N +T GF+ + F ++V G + Sbjct: 1 MMRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVS 60 Query: 54 QKISFVASGKEYLSK------EVGSFISTGTELDFALEGD-AWFALESPRG-IILTRDGR 105 + + V G + E+GSF +TG +LD A+ G+ +F ++ P G TRDG Sbjct: 61 EIPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQMPDGSFAFTRDGS 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN---VGEKGEISQK------GKVIA 156 FK+ + +V+++G + P+ +P+ I N + E+GE++ K VI Sbjct: 121 FKIDSNQQVVTSNGY-----LLEPPLILPE-GAILNTLMISEQGEVTVKVGADIRPIVIG 174 Query: 157 TMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + LY G + +E P IP TP + G V +GFLE SN + EM Sbjct: 175 QVELYRFVNPAGLQAIGKNLFQETVASGPEIPGTPGMEGFG-NVLQGFLEMSNVKIVEEM 233 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S + I ++ + AI Sbjct: 234 VAMIVAQRAYESNSKAIQTSDNMLSTAI 261 >gi|304317903|ref|YP_003853048.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779405|gb|ADL69964.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 266 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 15/164 (9%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD---GSLVSASGKYPVLDM 126 GS T LD AL+G+ +FA+ P G TRDG FK++ D +L +A G YPVLD Sbjct: 82 GSLQETDNPLDVALDGEGFFAVLGPDGNTYYTRDGSFKLSVDQNTATLTTADG-YPVLDD 140 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENS---GIS 178 PI + ++ G IS K + IAT+G+Y+ G + + N+ + Sbjct: 141 GGNPITFDSTQKDISISPLGVISVKNPDGTQQDIATLGIYNFQNPNGLLNKGNNLYEATA 200 Query: 179 PNIPPTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P +D G V +GFLE SN + EM MI + + Sbjct: 201 ASGAPGTRDDFQGKMGNVVQGFLETSNVQVVNEMVNMIAAQRAY 244 >gi|66046704|ref|YP_236545.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae B728a] gi|63257411|gb|AAY38507.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Pseudomonas syringae pv. syringae B728a] Length = 262 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 48/267 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GLAAQ + L+T+++N++N T GF++ + +F +++ IK Sbjct: 11 GLAAQ---DTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G I +RDG F + Sbjct: 68 LGTGVRIVGTQKNFTA---GSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTFHLDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------------QKGKV 154 +G +V+A+G L+ A I +PQ + F VG+ G +S Q Sbjct: 125 NGQIVTANGY--ALEPA---IVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADF 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 I GL ++ + ++ +SG +P I L L G T++ LE+SN +++ E+ MI Sbjct: 180 INPAGLQAIGGNL-YLETGSSG-APQIGTPGLNGL-GPTLQN-TLENSNVSTVEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 TTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|302338303|ref|YP_003803509.1| flagellar basal-body rod protein FlgF [Spirochaeta smaragdinae DSM 11293] gi|301635488|gb|ADK80915.1| flagellar basal-body rod protein FlgF [Spirochaeta smaragdinae DSM 11293] Length = 282 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 59/263 (22%) Query: 17 QRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------------VA 60 R+ +++N++N D VG++ ++ F +++ ND D SF + Sbjct: 17 HRMDAISNNLANVDLVGYKRDQSVSKAFPQMLIRRMND-DGVYSFPFGSADTAPVVGMIG 75 Query: 61 SGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +G EY G+ TG + D AL+G +FA+++PRG TR+G F +T +G L + Sbjct: 76 TGVEYNESFTVFSQGALKETGNDFDLALDGKGFFAVDTPRGERYTRNGTFVLTKEGILTT 135 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-------KVIATMG---------- 159 G+ PVL + I+I + + F V E+G++ Q G ++++ Sbjct: 136 KEGE-PVLGENGI-IRIKKNN--FVVDERGQVWQNGSYDGDPQRLVSKEENEWENLELVD 191 Query: 160 -LYSVDMSQG-FVRRENSGISPNIPPTPLEDLSGVT------VKRGFLEDSNANSMYEMG 211 L VD + ++++E G S I P + V V +GFLE SN NS+ EM Sbjct: 192 TLKVVDFRRDRYLKKE--GDSLYIAPEEAGASNQVALGSETKVVQGFLEGSNVNSVTEMV 249 Query: 212 QMIHLTQKFNSITTLIDENEKSM 234 +MI + + + + N+K+M Sbjct: 250 RMIEVNRAYEA-------NQKAM 265 >gi|294828153|ref|NP_712848.2| flagellar basal body rod protein FlgG [Leptospira interrogans serovar Lai str. 56601] gi|293386000|gb|AAN49866.2| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] Length = 264 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 37/256 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEY 65 +A + + T+++N++N +T GF+ + F ++V G + + + V G Sbjct: 12 IAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVSEIPTGVNVGHGV 71 Query: 66 LSK------EVGSFISTGTELDFALEGD-AWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + E+GSF +TG +LD A+ G+ +F ++ P G TRDG FK+ + +V++ Sbjct: 72 RAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQMPDGSFAFTRDGSFKIDSNQQVVTS 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFN---VGEKGEISQK------GKVIATMGLYSVDMSQG 168 +G + P+ +P+ I N + E+GE++ K VI + LY G Sbjct: 132 NGY-----LLEPPLILPE-GAILNTLMISEQGEVTVKVGADIRPIVIGQVELYRFVNPAG 185 Query: 169 F------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + +E P IP TP + G V +GFLE SN + EM MI + + S Sbjct: 186 LQAIGKNLFQETVASGPEIPGTPGMEGFG-NVLQGFLEMSNVKIVEEMVAMIVAQRAYES 244 Query: 223 ITTLIDENEKSMLEAI 238 + I ++ + AI Sbjct: 245 NSKAIQTSDNMLSTAI 260 >gi|289679021|ref|ZP_06499911.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae FF5] gi|330972416|gb|EGH72482.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aceris str. M302273PT] Length = 262 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 48/267 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GLAAQ + L+T+++N++N T GF++ + +F +++ IK Sbjct: 11 GLAAQ---DTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G I +RDG F + Sbjct: 68 LGTGVRIVGTQKNFTA---GSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTFHLDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------------QKGKV 154 +G +V+A+G L+ A I +PQ + F VG+ G +S Q Sbjct: 125 NGQIVTANGY--ALEPA---IVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADF 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 I GL + M S +P I L L G T++ LE+SN +++ E+ MI Sbjct: 180 INPAGLQA--MGGNLYLETGSSGAPQIGTPGLNGL-GPTLQN-TLENSNVSTVEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 TTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|187478186|ref|YP_786210.1| flagellar basal body rod protein FlgF [Bordetella avium 197N] gi|115422772|emb|CAJ49300.1| flagellar basal-body rod protein [Bordetella avium 197N] Length = 255 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 22/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLS 67 AA+ A Q S +++N++N T GFR + V + +++ A+ G + Sbjct: 12 AARTAEHQ--SVLSNNLANVSTPGFREQLAMYRSVPVNDGTSLPTRVATAATTPGSNF-- 67 Query: 68 KEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 +G STG ELD AL G WFA+++P+G TR G +V +G L +A+G+ PVL Sbjct: 68 -AMGVMQSTGRELDVALSSGQGWFAIQTPQGEAYTRAGSLQVGVNGLLQTAAGQ-PVLSD 125 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRENSGI--- 177 +V I IP + + G I+ G + MG L V+ Q + R + G+ Sbjct: 126 QNVLIDIPDQ-AALTIASDGTITALGAGDPPNNVLNMGRLKMVNAPQSQLLRGDDGLFRM 184 Query: 178 ---SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + P PL G + G +E SN ++ M MI ++F ++ E ++ Sbjct: 185 PAQANGQPAAPLPADPGQRLIAGVVEGSNVSASGAMVAMIENARRFEMQMQVVSEANRN 243 >gi|313672412|ref|YP_004050523.1| flagellar basal-body rod protein flgg [Calditerrivibrio nitroreducens DSM 19672] gi|312939168|gb|ADR18360.1| flagellar basal-body rod protein FlgG [Calditerrivibrio nitroreducens DSM 19672] Length = 262 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 G+ AQ + + +A+N++N + +GF+ ++ F +++ G I+ Sbjct: 11 GMTAQ---QMNIDNIANNLANVNNIGFKKSRIHFEDLLYQEMRPAGGPTAAGINHPTGIQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + G + ++ E G+F TG +LD A+EGD +F + P G I TR+G FK+ +G+ Sbjct: 68 IGLGTKVVATEKIFGQGNFQQTGNQLDIAIEGDGFFQVTMPDGTIGYTRNGSFKLDSNGN 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 +V+A G +L+ A I +P+ +G+ G +S + + I Sbjct: 128 IVTAEGY--LLEPA---IAVPENATSIIIGQDGTVSVTIPGDTNPTELGAIELARFINPS 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + + + + + P D G TV +G LE SN N EM MI Q Sbjct: 183 GLKNIGRN---LYQPTAASGEPVTGAPGTDAFG-TVAQGILEMSNVNVAEEMVNMI-TGQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + + + ML+ + N+ Sbjct: 238 RAYELNSKAIQTSDEMLQVVNNL 260 >gi|307721136|ref|YP_003892276.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] gi|306979229|gb|ADN09264.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] Length = 273 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 61/259 (23%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + A + RL T+A+N++N +T GF+ ++ + + K D+ +S Sbjct: 1 MQTGYYSSAAGMVTQFNRLDTIANNLANVNTNGFKEDQLIVGDFMRLYKEARDE-LSNAN 59 Query: 61 SGK------------------EYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILT 101 + K Y + VG+ + LDFAL + +FA+++P G+ LT Sbjct: 60 NSKAGAAFLNRTMTRAPQIVDSYTNYSVGNMQKSSNSLDFALSQEGLFFAVKTPEGVRLT 119 Query: 102 RDGRFKVTDDGSLVSASGKYPVL----DMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 RDG F + D+G L++ G Y VL + I D I V + G+I Sbjct: 120 RDGAFTLNDEGKLITKQG-YEVLPSDYQNSQEGISFATTDSIIEVDKNGQI--------- 169 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDL---------------------SGVTVKR 196 L +V S V+ + I+ P L+DL SG V++ Sbjct: 170 --LTNVPNSASLVQNKKLFIA---QPESLKDLVKEGDNLYKLADINSLKSIEQSGA-VRQ 223 Query: 197 GFLEDSNANSMYEMGQMIH 215 GF+E SN N++ M Q+I Sbjct: 224 GFVEKSNVNAVKMMTQLIE 242 >gi|86360902|ref|YP_472789.1| flagellar hook protein FlgE [Rhizobium etli CFN 42] gi|86285004|gb|ABC94062.1| flagellar hook protein [Rhizobium etli CFN 42] Length = 430 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 25/123 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++AQ RLSTV+DN++N +TVG++ + FS +V G ++ + Q IS Sbjct: 13 GMSAQ---ANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGVQTSVRQAIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G T + D A+ GD +F +ES G +LTR G F V DG+LV+ Sbjct: 70 -----------QQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVN 118 Query: 117 ASG 119 ++G Sbjct: 119 SAG 121 >gi|27363704|ref|NP_759232.1| flagellar basal body rod protein FlgF [Vibrio vulnificus CMCP6] gi|27359820|gb|AAO08759.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus CMCP6] Length = 249 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 13/213 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q L A+N++N T GFR + + + A + + ++ F + + + GS I+T Sbjct: 17 QALQLRANNLANVSTTGFRA-DLAQARSMQAYGDGLPTRV-FSMTERPGHNFAQGSVITT 74 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G +LD +EG+ W + G LTR+G KV +G L +ASG + VL PI IP Sbjct: 75 GRDLDITIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASG-HLVLGEGGAPITIPL 133 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI--------PPTPLE 187 +G G IS + + +D + V+ +S + + P P E Sbjct: 134 PVSKIEIGRDGTISVLPQGAPAEEMEEIDRIK-LVKTNDSALFKDTNGLFRHKEPNQPYE 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + G +E SN N++ EM +I L ++F Sbjct: 193 ADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQF 225 >gi|319898637|ref|YP_004158730.1| flagellar basal-body rod protein flgG (Distal rod protein) [Bartonella clarridgeiae 73] gi|319402601|emb|CBI76146.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bartonella clarridgeiae 73] Length = 264 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 34/239 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKI----S 57 G+AAQ + L +A+NM+N +T GF+ + +F++++ I N ++Q I + Sbjct: 12 GMAAQ---QTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGIPNMLNQAIIPEGA 68 Query: 58 FVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + G + G+F+ TG LD A+ G+ WF ++ P G + TR G F +++ G Sbjct: 69 MIGMGVRTAAVRTVNTQGAFVQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETG 128 Query: 113 SLVSASGKYPVLDMASVPIQ------IPQKDEIFNVGEKGEISQKGKV-----IATMGLY 161 +++ G V + ++PI P + + G++ + +GL Sbjct: 129 QIITLDGNL-VQPVITIPIGSKNVTVSPDGTVYYQTDADPSAVEAGRLRLVNFVNEVGLE 187 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + R + +P +P P +D G ++ + LE SN + + EM ++I + + Sbjct: 188 PI--GDNLFRETQASGAP-VPGDPKDDGYG-SIMQAMLESSNVDPVKEMTELIAAQRSY 242 >gi|291518271|emb|CBK73492.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4] Length = 267 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 30/251 (11%) Query: 16 EQRLSTVADNMSNTDTVGFRT---IKVKFSEVVGAIK-------NDIDQKISFVA----S 61 ++R+ + +N++N+ T G++ I F E + AIK ++ + I +++ Sbjct: 16 QKRMDVMTNNLANSATTGYKKEAMIAQAFDERL-AIKIKDTSSWHNAPEGIGYISLGAKV 74 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRDGRFKVTDDGSLVS 116 G+ Y + + G+F T + D AL G +FA+E I TRDG F V DG L + Sbjct: 75 GETYTNWDQGAFQITDKDSDVALAGRGFFAIEFTNKAGETSIKYTRDGAFVVDRDGYLRT 134 Query: 117 ASGKYPVLDMASVPIQIPQKDEI-------FNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 G Y + ++ Q + + + + + G I Q G+ + T+G+ +D + + Sbjct: 135 VDGDYVLTQEGAMNSQGGEDNYVQIDPNLKYVIATDGSIRQNGEEVTTIGVIDID-NYDY 193 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + + IP + + V V++G LE SN N + EM MI + + + + +I + Sbjct: 194 INKYGENLYDLIPGGNIVESEAV-VQQGMLEASNVNVIDEMVSMITIARAYEAGQKMI-Q 251 Query: 230 NEKSMLEAIRN 240 E S LE N Sbjct: 252 AEDSTLEKTAN 262 >gi|258404727|ref|YP_003197469.1| flagellar basal-body rod protein FlgG [Desulfohalobium retbaense DSM 5692] gi|257796954|gb|ACV67891.1| flagellar basal-body rod protein FlgG [Desulfohalobium retbaense DSM 5692] Length = 262 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 39/250 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAI---KN 50 M T+ + A + + +A+N++N +T GF+ +V F ++ VG+ +N Sbjct: 1 MTTALSTAATGMEAQQTIVDVIANNLANVNTTGFKKSRVDFQDLLYQDARNVGSAVTQEN 60 Query: 51 DIDQKISF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 D+ V + Y +G TG ELD A+EGD +F + P G TR G Sbjct: 61 DVPTGTQIGHGVRTAAVYKINTIGDINRTGNELDLAIEGDGFFQVTLPDGETAYTRAGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKVIATMGLYSVD 164 K DG +V++ G YP+ I IP+ +G+ G + +G+ L +++ Sbjct: 121 KKDGDGRVVTSDG-YPL----EPEIVIPENATDVVIGKDGTVQAYLEGEAATPSDLGTIE 175 Query: 165 MSQGFVRRENSGISPNI----------PPTPLEDLSGV----TVKRGFLEDSNANSMYEM 210 ++ R N NI P+ DL G + + FLEDSN ++M EM Sbjct: 176 LA----RFSNPAGLKNIGNNLHLETQSSGAPIVDLPGEDGLGALAQNFLEDSNVSTMQEM 231 Query: 211 GQMIHLTQKF 220 MI + + Sbjct: 232 VNMISAQRAY 241 >gi|154249604|ref|YP_001410429.1| flagellar basal-body rod protein FlgG [Fervidobacterium nodosum Rt17-B1] gi|154153540|gb|ABS60772.1| flagellar basal-body rod protein FlgG [Fervidobacterium nodosum Rt17-B1] Length = 261 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 53/242 (21%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----------------IDQKISFVAS 61 ++ TV++N++N DT G++ IK +F +++ + + + + A+ Sbjct: 18 KMDTVSNNIANVDTAGYKKIKAEFQDLIYSYSKNAGAATAQNSTTPTGIYVGHGVKLAAT 77 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 K + G+ +TG LD A+ GD +F ++ G I TRDG+FK+ G +V+A+G Sbjct: 78 TKIFTQ---GNLENTGNALDLAITGDGFFQIQLQDGRIAYTRDGQFKLDSQGRVVTANGL 134 Query: 121 YPVLDMASVPIQIPQK--------DEIFNVG-EKGEISQKGKV-----IATMGLYSVDMS 166 + S I +PQ D I +V G I Q G + + GL S+ Sbjct: 135 -----LLSPAIVVPQNAVSLTVSPDGIVSVELADGTIQQLGTITLVRFVNPAGLKSIG-- 187 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQ--KF 220 +N + N P+E + G T+ +G++E SN + + EM MI + +F Sbjct: 188 ------DNLYLQTNASGEPIEGVGGQDGFGTIMQGYVEKSNVDVVKEMVDMITAMRAYEF 241 Query: 221 NS 222 NS Sbjct: 242 NS 243 >gi|134095096|ref|YP_001100171.1| basal-body rod protein [Herminiimonas arsenicoxydans] gi|133738999|emb|CAL62047.1| Flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Herminiimonas arsenicoxydans] Length = 246 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 13/239 (5%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ LEQ+ +TV N+SN T GFR F V + N +FV Sbjct: 12 AKQILEQQ-ATVTHNLSNVSTTGFRAQLDTFRAV--PVVNAALPTRTFVVDSTVGNDFRA 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G F TG +LD A++G W A+E G TR G KV ++G L + SG + D Sbjct: 69 GPFQQTGRDLDVAIQGKGWLAVERADGTEGYTRSGSLKVNENGVLQTQSGLNVLGDGG-- 126 Query: 130 PIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 PI IP +I + + G I S+ G+ I L V+ + ++R + G+ Sbjct: 127 PISIPPDVQI-TIAKDGTISSVESGSKPGQTIQVGRLKLVNPDEANLKRADDGLFVTKDG 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + V++ G +E SN N + M MI L ++F ++ E + +A +A Sbjct: 186 EDVAADADVSLVSGAVEGSNVNVVDAMVNMITLARQFELHMNMLKHAESNAAKATEFLA 244 >gi|28869144|ref|NP_791763.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. tomato str. DC3000] gi|71735047|ref|YP_275559.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. phaseolicola 1448A] gi|213967579|ref|ZP_03395727.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato T1] gi|257484944|ref|ZP_05638985.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627766|ref|ZP_06460720.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651643|ref|ZP_06482986.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. 2250] gi|298487853|ref|ZP_07005893.1| Flagellar basal-body rod protein flgG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385716|ref|ZP_07234134.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato Max13] gi|302060071|ref|ZP_07251612.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato K40] gi|302134830|ref|ZP_07260820.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302185580|ref|ZP_07262253.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae 642] gi|28852384|gb|AAO55458.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. tomato str. DC3000] gi|71555600|gb|AAZ34811.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. phaseolicola 1448A] gi|213927880|gb|EEB61427.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato T1] gi|298157578|gb|EFH98658.1| Flagellar basal-body rod protein flgG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325096|gb|EFW81165.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. B076] gi|320329355|gb|EFW85348.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. race 4] gi|330866425|gb|EGH01134.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880529|gb|EGH14678.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. race 4] gi|330986471|gb|EGH84574.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011045|gb|EGH91101.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331017022|gb|EGH97078.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 262 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 124/267 (46%), Gaps = 48/267 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GLAAQ + L+T+++N++N T GF++ + +F +++ IK Sbjct: 11 GLAAQ---DTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G + +RDG F + Sbjct: 68 LGTGVRIVGTQKNFTA---GSLQTTNNPLDLAVNGRGFFQVTQPDGTVAYSRDGTFHLDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------------QKGKV 154 +G +V+A+G L+ A I +PQ + F VG+ G +S Q Sbjct: 125 NGQIVTANGY--ALEPA---IVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADF 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 I GL ++ + ++ +SG +P I L L G T++ LE+SN +++ E+ MI Sbjct: 180 INPAGLQAIGGNL-YLETGSSG-APQIGTPGLNGL-GPTLQN-TLENSNVSTVEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 TTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|37679148|ref|NP_933757.1| flagellar basal body rod protein FlgF [Vibrio vulnificus YJ016] gi|320157108|ref|YP_004189487.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus MO6-24/O] gi|37197890|dbj|BAC93728.1| flagellar basal body rod protein FlgF [Vibrio vulnificus YJ016] gi|319932420|gb|ADV87284.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus MO6-24/O] Length = 249 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 95/226 (42%), Gaps = 39/226 (17%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------ 70 Q L A+N++N T GFR D+ Q S A G E L V Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLAQARSMQAYG-EGLPTRVFSMTER 61 Query: 71 -------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 GS I+TG +LD +EG+ W + G LTR+G KV +G L +ASG + Sbjct: 62 PGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASG-HL 120 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI- 181 VL PI IP +G G IS + + +D + V+ +S + + Sbjct: 121 VLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEEIDRIK-LVKTNDSALFKDTN 179 Query: 182 -------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P P E V + G +E SN N++ EM +I L ++F Sbjct: 180 GLFRHKEPNQPYEADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQF 225 >gi|117926379|ref|YP_866996.1| flagellar basal-body rod protein FlgG [Magnetococcus sp. MC-1] gi|117610135|gb|ABK45590.1| flagellar basal-body rod protein FlgG [Magnetococcus sp. MC-1] Length = 263 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 39/231 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF---VASGK 63 A + + +A+N++NT+T GF+ + F +++ GA + ++ + G Sbjct: 14 AQQTNIDVIANNLANTNTAGFKRSRADFQDLLYQNMRAAGAATSQAGNQVPVGIQLGHGV 73 Query: 64 EYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 +S G ++ TG ELD A+EG +F ++ P G TRDG FK+ + G +V+A Sbjct: 74 RTVSVSKMFTQGDYVQTGNELDMAIEGKGFFQIQMPDGSTAYTRDGTFKLDNSGQIVTAD 133 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-----IATMGLYSV 163 G VLD + +PQ VG G +++Q G++ I GL ++ Sbjct: 134 GY--VLDPG---LTLPQNATNVAVGPDGTVAVKTPDQADLTQVGQIQLAQFINPAGLNAI 188 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + E+ + T ED G TV++ +LE SN N + EM MI Sbjct: 189 GRN---LYTESGASGAPVVGTAGEDGLG-TVQQQYLELSNVNMVEEMVNMI 235 >gi|311105936|ref|YP_003978789.1| flagellar basal-body rod protein FlgF [Achromobacter xylosoxidans A8] gi|310760625|gb|ADP16074.1| flagellar basal-body rod protein FlgF [Achromobacter xylosoxidans A8] Length = 254 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 27/241 (11%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + + + +++NM+N +T GFR + V + ++S VAS S ++G+ Sbjct: 15 ITEHQAALSNNMANVNTAGFREQIALYRSVPVTDGTSLPTRVSTVASTPRN-SFQMGNMQ 73 Query: 75 STGTELDFALEGD-AWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG +LD AL + W A+++P+G TR G +V +G L ++ G+ PVL PI I Sbjct: 74 TTGRDLDVALSSERGWIAVQTPQGEAYTRAGGLQVGINGLLQTSLGQ-PVLSDQGGPIDI 132 Query: 134 PQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQ---------GFVRRE--NSGI 177 P + + G I+ G I +G + Q G R N Sbjct: 133 PDQ-AALTITADGTITAIGAGDAPNNILNLGRIKLASPQNDQLVHGDDGVFRMAPVNGQP 191 Query: 178 SPNIPPTP-LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 +P +P P L LSGV LE SN N M M MI ++F +I +++++ Sbjct: 192 APPVPADPSLRLLSGV------LEGSNTNPMAAMVGMIANARRFEQQMQVIQQSDRNAER 245 Query: 237 A 237 A Sbjct: 246 A 246 >gi|315497882|ref|YP_004086686.1| flagellar basal-body rod protein flgf [Asticcacaulis excentricus CB 48] gi|315415894|gb|ADU12535.1| flagellar basal-body rod protein FlgF [Asticcacaulis excentricus CB 48] Length = 249 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 114/258 (44%), Gaps = 54/258 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVG--FRTIKVKFSEVVGAIKNDIDQKISF 58 M + + L+ QL L + L A+N++N +T G F + V+ E A I +F Sbjct: 1 MDNASYVALSRQLVLRRELDVTANNLANMNTNGYKFEQLLVEPEEGRPAYNLPIRAPANF 60 Query: 59 V---ASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVTDDGSL 114 G+++ G+ +TG + D +EG+ A+F + G + TRDG F V+ G L Sbjct: 61 AYDKGVGRDFSQ---GALTTTGGDYDVGIEGEGAFFVINGANGPLYTRDGAFTVSPQGVL 117 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV----IATMGLYSVDMSQGFV 170 V+ G +P+Q G+ GEI + I+ G+ S + G V Sbjct: 118 VTGDG---------LPVQ----------GDGGEIRLNPEFGAPSISADGVVSQRSTDGIV 158 Query: 171 R--------------RENSG-----ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 R E G + N+ P P D +++G +E SN N++ E+ Sbjct: 159 RVGRISVVRFASLSDLEKQGDNRFRATTNVAPDPAPD---ARLRQGMIETSNVNALSEVT 215 Query: 212 QMIHLTQKFNSITTLIDE 229 +++ + + + S+T +I++ Sbjct: 216 RLVEINRAYASVTKIIEQ 233 >gi|78067836|ref|YP_370605.1| flagellar basal body rod protein FlgF [Burkholderia sp. 383] gi|77968581|gb|ABB09961.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 252 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 28/242 (11%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVAS--GK 63 A +L+Q+ + VA+N++N T GFR + V G+ + + +AS G Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSTSDPTTTRTYVLASTPGA 70 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 +Y G TG LD A++G W ++++ G TR G V ++G LV+AS P Sbjct: 71 DYAP---GPITRTGNPLDVAVQGAGWLSVQAADGSEAYTRAGNLHVDENGQLVNAS-NLP 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRREN 174 V+ PI +P E+ +G+ G IS ++ M L + D + + R N Sbjct: 127 VVGNGG-PISVPPNAEV-TIGKDGTISALMPGDPPTAVAIVDQMKLVNPDPAT--LTRGN 182 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENE 231 G+ P + V V LE SN N + M MI + F + LI D+NE Sbjct: 183 DGLFRTADGNPADADPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNE 242 Query: 232 KS 233 +S Sbjct: 243 QS 244 >gi|157363238|ref|YP_001470005.1| hypothetical protein Tlet_0374 [Thermotoga lettingae TMO] gi|157313842|gb|ABV32941.1| protein of unknown function DUF1078 domain protein [Thermotoga lettingae TMO] Length = 249 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 30/220 (13%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQK-----ISFVASGKE-YLSKEV 70 +L A+N++N +TV ++ K+ F AI D++ +++ A + +L + Sbjct: 18 KLDVTANNLANVETVAYKRDKLAFRAYQDRAIYALPDRRQPIGNLTYSAVLDDVFLDSSM 77 Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+F+ T +DFA++G+ +F+L G+ +R G FK+ ++G LV+ G VLD + P Sbjct: 78 GTFMKTDNPMDFAIDGEGFFSLLGEDGVYYSRAGNFKLNEEGYLVNTDGLM-VLDENNQP 136 Query: 131 IQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDMSQGFVRR---------ENSGISPN 180 I+ + V G I G VI +G+Y+ D G +R+ E SG Sbjct: 137 IRFESS---YVVDADGYIRDPVGNVITRLGIYNFD-DPGELRKIGYTLFQPTEESG---- 188 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P ++ + G++E SN N++ EM +I + F Sbjct: 189 -QPVVADEFR---ILSGYVELSNVNAIDEMVNLIEAQRHF 224 >gi|149194278|ref|ZP_01871375.1| flagellar basal-body rod protein distal rod protein [Caminibacter mediatlanticus TB-2] gi|149135453|gb|EDM23932.1| flagellar basal-body rod protein distal rod protein [Caminibacter mediatlanticus TB-2] Length = 262 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 125/262 (47%), Gaps = 47/262 (17%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDIDQKISFVASGKEY 65 +A + ++ V++N+SN +T+G++ + +F+ E G + + + + G Sbjct: 13 MAQQTQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTATSTTTKSPTGINVGLGV 72 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + G+ T LD A++GD +F ++ P G I TRDG FK+ DG++V++ Sbjct: 73 RPTAITKIFTQGNLKQTNNNLDLAIQGDGFFQVQLPDGRIGYTRDGAFKLDADGNIVTSD 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSV 163 G Y ++ ++P P ++ ++G G +S Q K I GL+S+ Sbjct: 133 G-YKLIPNITLP---PDTVQV-SIGTDGTVSILQAGQTQMQQIGQIQLAKFINPAGLHSL 187 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQK 219 S ++ SG P+ D+ G T +++GF+E SN + EM +I + Sbjct: 188 G-SNLYINTSASG-------DPIVDVPGQTGLGEIRQGFIEMSNVQLVEEMTDLITGQRA 239 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 +++ + I +++ ML+ + N+ Sbjct: 240 YDAASKAIMTSDE-MLQTVNNL 260 >gi|39998142|ref|NP_954093.1| flagellar basal body rod protein FlgG [Geobacter sulfurreducens PCA] gi|39985088|gb|AAR36443.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] gi|298507079|gb|ADI85802.1| flagellar basal body rod protein FlgG [Geobacter sulfurreducens KN400] Length = 262 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + + VA+N++N +T GF+ + F +++ GA Q S + Sbjct: 11 GMQAQ---QTNIDVVANNLANVNTAGFKKSRADFQDLMYQNLKTSGAPSTSSTQVPSGIQ 67 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G V G+ TG ELD A+EGD +F ++ P G +R G FK D G Sbjct: 68 IGLGAKLAAVTKLFSEGNINQTGNELDIAIEGDGFFQIQMPDGTTTYSRAGSFKRDDQGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGLYSVDMSQ 167 +V++ G YP+L + +P +VG G +S Q G+ I + L + Sbjct: 128 VVTSDG-YPMLP----ELVVPSNATSISVGNDGTVSVTQAGQTSPTNIGNIQLATFSNPS 182 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQ 218 G F ++SG P T +G+ T+ +GFLE SN + M EM MI + Q Sbjct: 183 GLTALGRNLFQESDSSG----TPTTGTPGQNGIGTLAQGFLEMSNVSVMEEMVNMI-VGQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + + + ML+ N+ Sbjct: 238 RAYEVNSKAVQAADEMLQQANNL 260 >gi|86146154|ref|ZP_01064480.1| polar flagellar FlgF [Vibrio sp. MED222] gi|218708805|ref|YP_002416426.1| flagellar basal body rod protein FlgF [Vibrio splendidus LGP32] gi|85836101|gb|EAQ54233.1| polar flagellar FlgF [Vibrio sp. MED222] gi|218321824|emb|CAV17794.1| Flagellar basal-body rod protein flgF [Vibrio splendidus LGP32] Length = 249 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 13/213 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q L ++N++N T GFR + + + A + ++ F + + + GS ++T Sbjct: 17 QALQLRSNNLANVSTTGFRA-DLAQARSMQAYGEGMPTRV-FSMTERPGHNFAQGSVVTT 74 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G +LD ++GD W ++ G LTR+G +V +G L +ASG + VL PI +P Sbjct: 75 GRDLDVTIQGDGWISVMDNTGREGLTRNGNLRVDQNGLLTNASG-HLVLGENDAPITLPI 133 Query: 136 KDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 +G G IS ++ V+ + L D +Q + N P E Sbjct: 134 PISKVEIGTDGTISVIPQGAPAEELAVVDRIKLVRPD-NQSLFKDTNGLFRSKNPDQAYE 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + VT+ +G +E SN N++ EM +I L ++F Sbjct: 193 ADAAVTLLKGAIEGSNVNAVGEMTSLIDLQRQF 225 >gi|308173591|ref|YP_003920296.1| flagellar hook protein [Bacillus amyloliquefaciens DSM 7] gi|307606455|emb|CBI42826.1| flagellar hook protein [Bacillus amyloliquefaciens DSM 7] gi|328553477|gb|AEB23969.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens TA208] gi|328911732|gb|AEB63328.1| flagellar hook protein [Bacillus amyloliquefaciens LL3] Length = 258 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 20/257 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF----SEVVGAIKNDIDQKI 56 M S G++ + +L + +N++N +TVGF+ +V F S+ V N + K Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQ 60 Query: 57 SFVASGKEYLS--KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + + + G+ +T + D A++GD +F + + GI+ TR G F + G+L Sbjct: 61 IGLGAATSSIDVVHSTGAPQATQNKSDLAIDGDGYFQINTGSGIVYTRAGNFGKDNKGNL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKVI---ATMGLYSVDMSQG- 168 V+ G Y + + I IP + +++G G + + G + +GL + S G Sbjct: 121 VTTDGYY-LEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDAVHNAGQIGLVTFPNSSGL 179 Query: 169 ------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 R S + + TP E+ +G + G+LE SN + E +MI + F S Sbjct: 180 EKIGGNLYRESLSSGAASAVTTPGENGTGKLLA-GYLEMSNVDLTDEFTEMIVAQRGFQS 238 Query: 223 ITTLIDENEKSMLEAIR 239 + +I +++ + E + Sbjct: 239 NSKIITTSDEILQELVN 255 >gi|283850806|ref|ZP_06368092.1| flagellar basal-body rod protein FlgF [Desulfovibrio sp. FW1012B] gi|283573729|gb|EFC21703.1| flagellar basal-body rod protein FlgF [Desulfovibrio sp. FW1012B] Length = 260 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 28/261 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M+ S L L+ E RL+ A+N++N +T G++ +V F + + D+ Sbjct: 1 MEMSMYSALFGALSTETRLNLSANNLANINTTGYKRDRVAFEDTFKRYAHDYHVDPRGDL 60 Query: 53 DQKISFVAS---GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 +K F + K L+ + G+ TG LD A++G +F + + G TR+G Sbjct: 61 REKEIFPRADLIAKPRLAMQTIDFSQGALQLTGNPLDLAIQGPGFFKVSNAGGTYYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + G LV+ YPVL PIQIP F+V G + G +A + + +V Sbjct: 121 AFHRSSQGMLVTDQ-DYPVLGNGG-PIQIPDGRS-FSVDATGAVYVDGGQVAQIDVVNVQ 177 Query: 165 MSQGFVRRENSGI-----SPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEMGQMIHLTQ 218 +R+ + + + P E G T V +G+LE N + EM MI + Sbjct: 178 NPDA-LRKYGANLYTAADGATVQEGPAE--GGTTQVAQGYLEKPNVEVVEEMVTMIETQR 234 Query: 219 KFNSITTLIDENEKSMLEAIR 239 F + ++ + + +AIR Sbjct: 235 TFEAYQKVMTNSNELDTKAIR 255 >gi|306846278|ref|ZP_07478839.1| flagellar basal-body rod protein FlgG [Brucella sp. BO1] gi|306273273|gb|EFM55142.1| flagellar basal-body rod protein FlgG [Brucella sp. BO1] Length = 262 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 49/244 (20%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T GF+ + +F SE + N +Q I + V Sbjct: 13 AQQLNLE----VIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALV 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GSF TG D AL G WF ++SP G + TR G F DG L Sbjct: 69 GLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQL 128 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ----- 167 V+ G PV ++P P E+ I+ G+V A + + VD+ Q Sbjct: 129 VTLDGN-PVEPAITIP---PDAIEV-------TITDTGQVFAKLQDQINQVDLGQLTLAN 177 Query: 168 -----------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 178 FTNEAGLEPLGGNLYRETEASGSPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRAY 240 >gi|237799211|ref|ZP_04587672.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. oryzae str. 1_6] gi|330961201|gb|EGH61461.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. maculicola str. ES4326] gi|331022066|gb|EGI02123.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. oryzae str. 1_6] Length = 262 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 124/267 (46%), Gaps = 48/267 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GLAAQ + L+T+++N++N T GF++ + +F +++ IK Sbjct: 11 GLAAQ---DTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G + +RDG F + Sbjct: 68 LGTGVRIVGTQKNFTA---GSLQTTNNPLDLAVNGRGFFQVTQPDGTVAYSRDGTFHLDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------------QKGKV 154 +G +V+A+G L+ A I +PQ + F VG+ G +S Q Sbjct: 125 NGQIVTANGY--ALEPA---IVVPQAAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADF 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 I GL ++ + ++ +SG +P I L L G T++ LE+SN +++ E+ MI Sbjct: 180 INPAGLQAIGGNL-YLETGSSG-APQIGTPGLNGL-GPTLQN-TLENSNVSTVEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 TTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|209547530|ref|YP_002279448.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538774|gb|ACI58708.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 430 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 25/123 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++AQ RLSTV+DN++N +TVG++ + FS +V G ++ + Q IS Sbjct: 13 GMSAQ---ANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSGNYNSGGVQTSVRQAIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G T ++ D A+ GD +F ++S G +LTR G F V DG+LV+ Sbjct: 70 -----------QQGDISYTTSDYDLAISGDGFFIVQSADGTPVLTRAGDFSVDSDGNLVN 118 Query: 117 ASG 119 +G Sbjct: 119 GAG 121 >gi|134300226|ref|YP_001113722.1| hypothetical protein Dred_2387 [Desulfotomaculum reducens MI-1] gi|134052926|gb|ABO50897.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 257 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 18/240 (7%) Query: 18 RLSTVADNMSNTDTVGFRT---IKVKFSEVV---------GAIKNDIDQKISFVASGKEY 65 +L+ V +N+SN T G++ + +F+E + G + I + I + + Sbjct: 18 KLNNVTNNLSNLSTTGYKKNNMVDSQFAESLQLALENHGPGGKRQPIGKGILGNMITQVH 77 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 + G TG D ALEG+ +F +E G LTRDG F V ++G+L++ G + VL Sbjct: 78 IDYGQGPLTETGKLTDMALEGNGYFVVEDENGEQFLTRDGSFHVNEEGALLTGDG-FRVL 136 Query: 125 DMASVPIQIPQKDEIFNVGEKGEI--SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 PI I +K E F + E G I Q + L V++S+ + ++ G P Sbjct: 137 GEGG-PI-ILEKPEDFTLKEDGTIMVGQGTEAEEIDKLQIVEVSEPALLKKTDGNYFQDP 194 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E TV +G+LE SN + + EM +I + + + S LI ++ + +AI + Sbjct: 195 EGVAEAAVSTTVTQGWLEKSNVDPVQEMINIIPVARIYESSQKLIQIQDELLDKAINQVG 254 >gi|225686012|ref|YP_002733984.1| flagellar basal body rod protein FlgG [Brucella melitensis ATCC 23457] gi|256262865|ref|ZP_05465397.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|225642117|gb|ACO02030.1| flagellar basal-body rod protein FlgG [Brucella melitensis ATCC 23457] gi|263092700|gb|EEZ16909.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|326410335|gb|ADZ67399.1| flagellar basal body rod protein FlgG [Brucella melitensis M28] gi|326553627|gb|ADZ88266.1| flagellar basal body rod protein FlgG [Brucella melitensis M5-90] Length = 262 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 49/244 (20%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T GF+ + +F SE + N +Q I + V Sbjct: 13 AQQLNLE----VIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALV 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GSF TG D AL G WF ++SP G + TR G F DG L Sbjct: 69 GLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQL 128 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ----- 167 V+ G PV ++P P E+ I+ G+V A + + VD+ Q Sbjct: 129 VTLDGN-PVEPAITIP---PDAIEV-------TITDTGQVFAKLQDQINQVDLGQLTLAN 177 Query: 168 -----------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 178 FTNEAGLEPLGGNLYRETEASGGALVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRAY 240 >gi|189426330|ref|YP_001953507.1| flagellar basal body rod protein FlgG [Geobacter lovleyi SZ] gi|189422589|gb|ACD96987.1| flagellar basal-body rod protein FlgG [Geobacter lovleyi SZ] Length = 262 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 122/254 (48%), Gaps = 39/254 (15%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ---KISF-VASGKEY 65 Q ++ +A+N++N +T GF+ + F +++ G+ + Q I F + S Sbjct: 17 QNINVIANNLANVNTTGFKKSRADFQDLMYQTVQNPGSPSTNAAQIPVGIQFGMGSKLAA 76 Query: 66 LSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 +SK+ G F +TG +LD A+EGD +F ++ P G +R G FK+ +G +V+ G YP Sbjct: 77 VSKQFTPGDFSNTGGQLDMAIEGDGFFQIQMPDGSTAYSRAGAFKMDSNGRVVTPEG-YP 135 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM-------------GLYSVDMSQ 167 +L I IP +G G +S Q G+ A+ GL S M + Sbjct: 136 MLP----EIVIPNNSTKITIGTDGTVSAVQSGQSTASTVGNIQIANFTNPAGLSS--MGK 189 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 F ++ ++ + TP + G T+ +GFLE SN + EM MI + + + + I Sbjct: 190 NFYQQTDASGNATT-GTPGQTGLG-TITQGFLEMSNVDVATEMVNMIIGQRAYEANSKAI 247 Query: 228 DENEKSMLEAIRNI 241 +++ ML+ N+ Sbjct: 248 TTSDE-MLQLANNL 260 >gi|162147478|ref|YP_001601939.1| flagellar basal body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] gi|209545587|ref|YP_002277816.1| flagellar basal body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] gi|161786055|emb|CAP55637.1| putative flagellar basal-body rod protein flgG [Gluconacetobacter diazotrophicus PAl 5] gi|209533264|gb|ACI53201.1| flagellar basal-body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] Length = 262 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 128/273 (46%), Gaps = 44/273 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDID 53 M S +I A + T+++N++N T G++ + +F ++ VG + +D Sbjct: 1 MMPSLDIAATGMQAQTTNVDTISNNIANMTTTGYKRRRAEFQDLIYQDVRRVGTMSSDTG 60 Query: 54 QKISFVASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTR 102 V +G + Y E G+ T LD A++G +F + P G TR Sbjct: 61 ---DLVPAGAQIGLGVRTAGIYRINEQGTLEQTSNALDMAIQGPGYFQVTLPSGEYAYTR 117 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKVIA---- 156 DG F +++DG++V+A G YP+ S I +P E V + G++ G+ A Sbjct: 118 DGTFSLSEDGTIVTADG-YPL----SPNITLPNNAENITVDQSGQVQYTISGQTQAQVAG 172 Query: 157 --TMGLYSVD-----MSQG-FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 +G++ + M Q F + +SG + I TP G+ +++GF+E+S+ N + Sbjct: 173 QIQLGIFQNENGLAAMGQNLFTQTTSSGDA--ILGTPQAQGYGL-IQQGFIEESSVNVVT 229 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ +I + + + +I +++ ML+ + N+ Sbjct: 230 EITDLITAQRAYEMNSKVITASDE-MLQTLTNL 261 >gi|154686045|ref|YP_001421206.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens FZB42] gi|154351896|gb|ABS73975.1| FlgE [Bacillus amyloliquefaciens FZB42] Length = 258 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 28/261 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF----SEVVGAIKNDIDQKI 56 M S G++ + +L + +N++N +TVGF+ +V F S+ V N + K Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQ 60 Query: 57 SFVASGKEYLS--KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + + + G+ +T + D A++GD +F + + GI+ TR G F + G+L Sbjct: 61 IGLGAATSSIDVVHSTGAPQATQNKTDLAIDGDGYFQINTGAGIVYTRAGNFGKDNQGNL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKG---------EISQKGKVIATMGLYSVDM 165 V+ G Y + + I IP + +++G G E+ G++ GL + Sbjct: 121 VTTDGYY-LEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDEVHDAGQI----GLVTFPN 175 Query: 166 SQG-------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 S G R S + + TP E+ +G + G+LE SN + E +MI + Sbjct: 176 SAGLEKIGGNLYRESLSSGAASAVTTPGENGTGKLLA-GYLEMSNVDLTDEFTEMIVAQR 234 Query: 219 KFNSITTLIDENEKSMLEAIR 239 F S + +I +++ + E + Sbjct: 235 GFQSNSKIITTSDEILQELVN 255 >gi|269836598|ref|YP_003318826.1| hypothetical protein Sthe_0566 [Sphaerobacter thermophilus DSM 20745] gi|269785861|gb|ACZ38004.1| protein of unknown function DUF1078 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 247 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 45/247 (18%) Query: 18 RLSTVADNMSNTDTVGF---RTIKVKFSEV-----VGAIKNDIDQKISFVASGKEYLSKE 69 R T+++N++N T G+ RT F E+ G I + V + + Sbjct: 18 RQLTISENLANVSTPGYKARRTTVQDFREMFLSRFAGGSATPIGSISTAVRPEERAIDLS 77 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ + TG LD A+ G A+FA+++P + TRDGRF++ D LV+ G +PVL + Sbjct: 78 QGALVETGRPLDLAIAGTAFFAVQTPDDVQYTRDGRFQLDADRRLVTGDG-FPVLGLNG- 135 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP-TPLED 188 PI +P+ D +V G I G + L PP TP+E Sbjct: 136 PITLPEGD--IHVTADGTILVNGAPAGQLQLV------------------EFPPDTPIEA 175 Query: 189 LS--------------GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + V +GF+E SN + M +M+ ++ + ++ ++ ++ Sbjct: 176 VGQNRFAIEGAGQQSETAGVSQGFVEQSNVDLAQSMVEMLEASRSYALAQRMLQVSDATL 235 Query: 235 LEAIRNI 241 A+ I Sbjct: 236 GTAVNEI 242 >gi|239826621|ref|YP_002949245.1| flagellar basal body rod protein FlgG [Geobacillus sp. WCH70] gi|239806914|gb|ACS23979.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. WCH70] Length = 264 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G+ A + +L + +N++N +T GF+ + F ++V G N Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLVSQQIAGASGPTANRG 60 Query: 53 DQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 V G + + + GS +TG LD A+ GD +F L G + TR G F Sbjct: 61 GVNPKQVGLGSQLAAIDTVHTQGSLQTTGRPLDLAISGDGFFVLGDKNGGNHVYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKG--KVIATMGLYS 162 + DG++V+A G Y +L + + I IP E F++G G ++ + G K + L Sbjct: 121 YLDKDGNIVNADGLY-LLGIGNKLINIPSSAESFSIGSDGTVNYIENGSLKSAGQIQLAK 179 Query: 163 VDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G F + NSG + P + +G T+ G LE SN + E +MI Sbjct: 180 FNNNDGLEKAGDNLFRQTANSGTAT--TGAPGANGTG-TIVAGTLEMSNVDLAEEFTEMI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 + F + T +I +++ + E + Sbjct: 237 VAQRGFQANTRIITTSDEILQELV 260 >gi|260222469|emb|CBA32064.1| Flagellar basal-body rod protein flgF [Curvibacter putative symbiont of Hydra magnipapillata] Length = 246 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 95/226 (42%), Gaps = 11/226 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A R S +A+N++N T GFR + V ++ + F G Sbjct: 14 AAASRQSVLANNLANVSTNGFRAQLATYRAV--PLRGEGATTRVFALEATAGHLNTPGPA 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 + T LD +GDAW ++ G TR+G +V DG+L + +G VL PI Sbjct: 72 MRTDRSLDVMAKGDAWLTVQGLDGTEAYTRNGHIEVATDGTLTTGNG-LQVLSSDGSPIT 130 Query: 133 IPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 P E+ V G +S Q VI + L V ++ ++R G+ + PL Sbjct: 131 SPAGAEL-TVQPDGNVSAKVGNQPANVIGRLKLV-VPTAEDPLKRGGDGLFRTLSGDPLN 188 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 V+ G LE SN N++ M MI ++F + T L+ E + Sbjct: 189 SEDTARVQAGMLEGSNVNAIEAMVGMIQTARQFEAQTRLMQTAESN 234 >gi|121596119|ref|YP_988015.1| flagellar basal-body rod protein FlgG [Acidovorax sp. JS42] gi|222112274|ref|YP_002554538.1| flagellar basal-body rod protein flgg [Acidovorax ebreus TPSY] gi|120608199|gb|ABM43939.1| flagellar basal-body rod protein FlgG [Acidovorax sp. JS42] gi|221731718|gb|ACM34538.1| flagellar basal-body rod protein FlgG [Acidovorax ebreus TPSY] Length = 260 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 38/249 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDID 53 M S I A + +L ++ N++N T GF+ F ++ VG+ + + Sbjct: 1 MMNSLWIAKTGMTAQQTQLDVISHNLANVSTTGFKRNNAVFEDLIYQNLRQVGSQTTEEN 60 Query: 54 Q---------KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRD 103 Q ++ VA+ + + GS +G LD A++G+ +F ++ P G TRD Sbjct: 61 QLPTGLHLGLGVNVVATSRNFTQ---GSLQQSGNSLDVAIDGNGFFEVQLPDGTTGYTRD 117 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIAT 157 G FK+ G +V++SG PV + I +P + ++ E+G +S + I Sbjct: 118 GAFKLDSQGRVVTSSG-LPV----APGITVPADAKSISISERGMVSVTVAGNPNPQQIGQ 172 Query: 158 MGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 +G+ S S G + RE++ P + G+ +K+GFLE+SN N + E+ Sbjct: 173 LGMSSFINSAGLEPVGQNLYRESAASGAPQQAEPGTNGLGI-IKQGFLENSNVNVVEELV 231 Query: 212 QMIHLTQKF 220 MI + + Sbjct: 232 TMIQTQRAY 240 >gi|291288380|ref|YP_003505196.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290885540|gb|ADD69240.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 252 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 118/233 (50%), Gaps = 22/233 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--------AIKN-DIDQKI-S 57 G+A Q ++R+ ++ N++N +TVG + FSE + I+N D ++ I S Sbjct: 11 GMAMQ---QRRMDIISSNLANLNTVGHKKEVGVFSEYIANASETPDDIIRNSDYNKMINS 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRDGRFKVTDDGSLVS 116 V ++ + G TG +D AL +A+FA+++P G+ TRDG F + + G L + Sbjct: 68 TVRLDDIKVNFQQGYLKETGNSMDMALTNPNAFFAVDTPYGVRFTRDGSFILNEQGELTT 127 Query: 117 ASGKYPVLDMASV-PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV-DMSQGFVRREN 174 G V +M S+ P+Q+ E V E+GE+ +G ++ + + D+S N Sbjct: 128 KDGFKVVSNMDSLQPVQMV---EGAIVNEEGEMLLEGALVNNIEIAQFEDLSALQKTGRN 184 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 ++ + P E+ +T G+LE SN N + EM +MI ++ F + + +I Sbjct: 185 LYVAVDALPDVAENPGLMT---GYLEGSNVNPVEEMVKMIEASRGFETYSKII 234 >gi|237752809|ref|ZP_04583289.1| flagellar basal-body rod protein flgG [Helicobacter winghamensis ATCC BAA-430] gi|229376298|gb|EEO26389.1| flagellar basal-body rod protein flgG [Helicobacter winghamensis ATCC BAA-430] Length = 277 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 59/280 (21%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK---- 63 G+ Q+ RL +A+N++N +T GF+ V V+G +Q F+ + Sbjct: 11 GMVTQI---NRLDVIANNIANANTTGFKRDDV----VIGDFMRLYEQHKEFLPIDEQTKD 63 Query: 64 -----------------EYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGR 105 EY +VG + T DFAL + + +F +E+P GI TRDG Sbjct: 64 AAQFYNRSLNRVPQIVEEYTDNKVGGMMITDNTFDFALSKENMYFMVETPDGIRYTRDGS 123 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV---------IA 156 F + + G LV+ G YPVL + PQ E + G + E+ G + I+ Sbjct: 124 FVLNEQGRLVTKEG-YPVLPREY--LDAPQYIEFID-GFQVEVDSNGNIYTRDLNNEGIS 179 Query: 157 TMGLYSVDMSQGFVRREN----SGISPNIPPTPLE--------DLSGVTVKRGFLEDSNA 204 M L + + G V EN I N+ P E + SG V++GFLE SN Sbjct: 180 EMALMA---NIGVVSFENPKYLKKIGDNLYSYPQERTDEREALERSG-AVRQGFLEKSNI 235 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 N + EM +I + + + ++ + + EAI +A+ Sbjct: 236 NVVQEMTGLIETNRLVEAYSKVLKTHMDELNTEAITKLAA 275 >gi|17989431|ref|NP_542064.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 1 str. 16M] gi|23499916|ref|NP_699356.1| flagellar basal body rod protein FlgG [Brucella suis 1330] gi|62317103|ref|YP_222956.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 1 str. 9-941] gi|83269095|ref|YP_418386.1| flagellar basal body rod protein FlgG [Brucella melitensis biovar Abortus 2308] gi|148557926|ref|YP_001257213.1| flagellar basal body rod protein FlgG [Brucella ovis ATCC 25840] gi|161620236|ref|YP_001594122.1| flagellar basal body rod protein FlgG [Brucella canis ATCC 23365] gi|163844346|ref|YP_001622001.1| flagellar basal body rod protein FlgG [Brucella suis ATCC 23445] gi|189022368|ref|YP_001932109.1| flagellar basal body rod protein FlgG [Brucella abortus S19] gi|225628625|ref|ZP_03786659.1| flagellar basal-body rod protein FlgG [Brucella ceti str. Cudo] gi|237816665|ref|ZP_04595657.1| flagellar basal-body rod protein FlgG [Brucella abortus str. 2308 A] gi|254691412|ref|ZP_05154666.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|254695290|ref|ZP_05157118.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|254702576|ref|ZP_05164404.1| flagellar basal body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|254706292|ref|ZP_05168120.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|254711414|ref|ZP_05173225.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis B2/94] gi|254720610|ref|ZP_05182421.1| flagellar basal body rod protein FlgG [Brucella sp. 83/13] gi|254731833|ref|ZP_05190411.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|256029956|ref|ZP_05443570.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|256043073|ref|ZP_05446017.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|256059608|ref|ZP_05449806.1| flagellar basal body rod protein FlgG [Brucella neotomae 5K33] gi|256111943|ref|ZP_05452894.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|256158118|ref|ZP_05456036.1| flagellar basal body rod protein FlgG [Brucella ceti M490/95/1] gi|256252928|ref|ZP_05458464.1| flagellar basal body rod protein FlgG [Brucella ceti B1/94] gi|256256598|ref|ZP_05462134.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|260544341|ref|ZP_05820162.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260564303|ref|ZP_05834788.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|260568516|ref|ZP_05838985.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] gi|260757026|ref|ZP_05869374.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|260759602|ref|ZP_05871950.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|260882836|ref|ZP_05894450.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|261215659|ref|ZP_05929940.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|261220019|ref|ZP_05934300.1| flagellar basal-body rod protein FlgG [Brucella ceti B1/94] gi|261313736|ref|ZP_05952933.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|261319022|ref|ZP_05958219.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis B2/94] gi|261323577|ref|ZP_05962774.1| flagellar basal-body rod protein FlgG [Brucella neotomae 5K33] gi|261753156|ref|ZP_05996865.1| flagellar basal-body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|265985650|ref|ZP_06098385.1| flagellar basal-body rod protein FlgG [Brucella sp. 83/13] gi|265986975|ref|ZP_06099532.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|265989511|ref|ZP_06102068.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|265993390|ref|ZP_06105947.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|265996635|ref|ZP_06109192.1| flagellar basal-body rod protein FlgG [Brucella ceti M490/95/1] gi|297249954|ref|ZP_06933655.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 5 str. B3196] gi|306838572|ref|ZP_07471409.1| flagellar basal-body rod protein FlgG [Brucella sp. NF 2653] gi|306841049|ref|ZP_07473773.1| flagellar basal-body rod protein FlgG [Brucella sp. BO2] gi|17985308|gb|AAL54328.1| flagellar basal-body rod protein flgg [Brucella melitensis bv. 1 str. 16M] gi|23463493|gb|AAN33361.1| flagellar basal-body rod protein FlgG [Brucella suis 1330] gi|62197296|gb|AAX75595.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 1 str. 9-941] gi|82939369|emb|CAJ12317.1| Flagellar basal body rod protein [Brucella melitensis biovar Abortus 2308] gi|148369211|gb|ABQ62083.1| flagellar basal-body rod protein FlgG [Brucella ovis ATCC 25840] gi|161337047|gb|ABX63351.1| flagellar basal-body rod protein FlgG [Brucella canis ATCC 23365] gi|163675069|gb|ABY39179.1| flagellar basal-body rod protein FlgG [Brucella suis ATCC 23445] gi|189020942|gb|ACD73663.1| Flagellar basal body rod protein [Brucella abortus S19] gi|225616471|gb|EEH13519.1| flagellar basal-body rod protein FlgG [Brucella ceti str. Cudo] gi|237787478|gb|EEP61694.1| flagellar basal-body rod protein FlgG [Brucella abortus str. 2308 A] gi|260097612|gb|EEW81486.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260151946|gb|EEW87039.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|260155181|gb|EEW90262.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] gi|260669920|gb|EEX56860.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|260677134|gb|EEX63955.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|260872364|gb|EEX79433.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|260917266|gb|EEX84127.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|260918603|gb|EEX85256.1| flagellar basal-body rod protein FlgG [Brucella ceti B1/94] gi|261298245|gb|EEY01742.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis B2/94] gi|261299557|gb|EEY03054.1| flagellar basal-body rod protein FlgG [Brucella neotomae 5K33] gi|261302762|gb|EEY06259.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|261742909|gb|EEY30835.1| flagellar basal-body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|262550932|gb|EEZ07093.1| flagellar basal-body rod protein FlgG [Brucella ceti M490/95/1] gi|262764260|gb|EEZ10292.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|263000180|gb|EEZ12870.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|264659172|gb|EEZ29433.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|264664242|gb|EEZ34503.1| flagellar basal-body rod protein FlgG [Brucella sp. 83/13] gi|297173823|gb|EFH33187.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 5 str. B3196] gi|306288938|gb|EFM60238.1| flagellar basal-body rod protein FlgG [Brucella sp. BO2] gi|306406358|gb|EFM62600.1| flagellar basal-body rod protein FlgG [Brucella sp. NF 2653] Length = 262 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 49/244 (20%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T GF+ + +F SE + N +Q I + V Sbjct: 13 AQQLNLE----VIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALV 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GSF TG D AL G WF ++SP G + TR G F DG L Sbjct: 69 GLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQL 128 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ----- 167 V+ G PV ++P P E+ I+ G+V A + + VD+ Q Sbjct: 129 VTLDGN-PVEPAITIP---PDAIEV-------TITDTGQVFAKLQDQINQVDLGQLTLAN 177 Query: 168 -----------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 178 FTNEAGLEPLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRAY 240 >gi|116327820|ref|YP_797540.1| flagellar basal body rod protein FlgG [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120564|gb|ABJ78607.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 265 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 37/268 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S +A + + T+++N++N +T GF+ + F ++V G + Sbjct: 1 MMRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVS 60 Query: 54 QKISFVASGKEYLSK------EVGSFISTGTELDFALEGD-AWFALESPRG-IILTRDGR 105 + + V G + E+GSF +TG +LD A+ G+ +F ++ P G +RDG Sbjct: 61 EIPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQMPDGSFAFSRDGS 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN---VGEKGEISQK------GKVIA 156 FK+ + +V+++G + P+ +P+ I N + E+GE++ K VI Sbjct: 121 FKIDSNQQVVTSNGY-----LLEPPLILPE-GAILNTLMISEQGEVTVKVGADIRPIVIG 174 Query: 157 TMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + LY G + +E P IP TP + G V +GFLE SN + EM Sbjct: 175 QVELYRFVNPAGLQAIGKNLFQETVASGPEIPGTPGMEGFG-NVLQGFLEMSNVKIVEEM 233 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S + I ++ + AI Sbjct: 234 VAMIVAQRAYESNSKAIQTSDNMLSTAI 261 >gi|262404539|ref|ZP_06081094.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC586] gi|262349571|gb|EEY98709.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC586] Length = 249 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 39/226 (17%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------ 70 Q + A+N++N T GFR D+ Q S A G E L V Sbjct: 17 QAMQLRANNLANVSTTGFRA--------------DLAQARSMQAYG-EGLPTRVFSMTER 61 Query: 71 -------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 GS I+TG +LD ++G+ W ++ G LTR+G ++ + G L++ +G +P Sbjct: 62 PGNNFAQGSVITTGRDLDITVQGEGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNG-HP 120 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI- 181 VL PI +P +G G IS + + + VD + VR N + ++ Sbjct: 121 VLGETGGPITLPVPLAKVEIGGDGTISVRPQGAPADAMEVVDRIK-LVRPGNQALFKDVN 179 Query: 182 -------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P E + V V G LE SN N++ EM +I L ++F Sbjct: 180 GLFRATDPNMQFEADANVKVLTGALEGSNVNAIGEMTSLIDLQRQF 225 >gi|254499121|ref|ZP_05111811.1| putative flagellar basal body rod protein [Legionella drancourtii LLAP12] gi|254351660|gb|EET10505.1| putative flagellar basal body rod protein [Legionella drancourtii LLAP12] Length = 237 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 18/224 (8%) Query: 5 FNIGLAAQLALEQ---RLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKISF 58 F+ A QLA++ +L +++ N+SN +T GF+ ++ F + A N + Q++ Sbjct: 2 FDAITATQLAMDYDQLKLQSISQNISNMNTPGFKRQLIENAGFDMHLQANVNQVAQQLE- 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + +L K G T D AL G+ +F ++ +GI TR G F+V + G L +A+ Sbjct: 61 ----QSHL-KAQGLINQTKNPTDLALCGEGYFQVQGEQGIFYTRRGDFQVNNQGELTTAT 115 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G+ VL V I D F V +G + + + + Q +R +G+ Sbjct: 116 GE-TVLGKGGV---IKVDDHAFTVDAQGALFIDHHKVDQLNIVQFKQPQ-LLRYSGNGLY 170 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +P+ + V +GF+E SN S+ EM M+ ++ F + Sbjct: 171 -QCDDSPIPVGANTQVHQGFIEQSNVKSIDEMMDMVKTSRHFEA 213 >gi|289548898|ref|YP_003473886.1| flagellar basal-body rod protein FlgG [Thermocrinis albus DSM 14484] gi|289182515|gb|ADC89759.1| flagellar basal-body rod protein FlgG [Thermocrinis albus DSM 14484] Length = 262 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 35/239 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--------FV 59 G++AQ + L ++ NM+N +TVGF+ ++ F +++ D S F Sbjct: 11 GMSAQ---QTNLDVISHNMANVNTVGFKKMRPTFQDLLYQTVRDPGAPTSPTTRAPSGFQ 67 Query: 60 ASGKEYLSKEVGSF-----ISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 Y+S G F TG +LD A++GD +F + P G I TR+G+F++ DG Sbjct: 68 IGLGVYISDTYGIFTQGNLFQTGNQLDLAIQGDGFFKVVLPDGTIAYTRNGQFRLDADGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEI-FNVGEKGEIS---QKGKVIATMGLYSVD--MSQ 167 +V+ G YP+ +VP D I ++G G +S Q + +G + ++ Sbjct: 128 IVNPDG-YPLDPEITVP-----ADAISVSIGPDGTVSVLRQGATTVEEIGRIELAKFVNP 181 Query: 168 GFVRR--ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +RR N I + P+ D G T+ +G+LE SN N + EM +I + F Sbjct: 182 AGLRRIGNNLFIQTDASGEPIVDNPGNQGLGTLLQGYLESSNVNIVEEMVNLIIAQRAF 240 >gi|134297197|ref|YP_001120932.1| flagellar basal body rod protein FlgF [Burkholderia vietnamiensis G4] gi|134140354|gb|ABO56097.1| flagellar basal-body rod protein FlgF [Burkholderia vietnamiensis G4] Length = 252 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 109/242 (45%), Gaps = 28/242 (11%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVAS--GK 63 A +L+Q+ + VA+N++NT T GFR + V G+ + + +AS G Sbjct: 12 ASQSLDQQ-AIVANNLANTSTTGFRAQLANYRAVPMNFGDGSTIDPTTTRTYVLASTPGA 70 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYP 122 +Y G TG LD A++G W ++++ G TR G V ++G LV+AS P Sbjct: 71 DYAP---GPITRTGNPLDVAVQGAGWLSVQTADGGEAYTRAGNLHVDENGQLVNAS-NLP 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRREN 174 V+ PI +P E+ +G+ G +S ++ M L + D + + R N Sbjct: 127 VIGNGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAMVDQMKLVNPDPTT--LTRGN 182 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENE 231 G+ P + V V LE SN N + M MI + F + LI D+NE Sbjct: 183 DGLFRTADGNPADADPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNE 242 Query: 232 KS 233 +S Sbjct: 243 QS 244 >gi|119899025|ref|YP_934238.1| flagellar basal body rod protein FlgG [Azoarcus sp. BH72] gi|119671438|emb|CAL95351.1| flagellar basal-body rod protein FlgG [Azoarcus sp. BH72] Length = 260 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 124/254 (48%), Gaps = 36/254 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + L +++N++N T GF+ + F +++ GA Q S Sbjct: 11 GLDAQ---QTSLDVISNNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSTQQTQVGSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ TG LD A++G+ +F + P G TRDG F++ + G+ Sbjct: 68 IGTGVRPVATERIFTQGNLQQTGGSLDIAIQGNGFFQIALPDGTTAYTRDGAFQLDNQGN 127 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEIS-------QKGKVIATMGLYS 162 +V+ASG YP+ D ++P KD +V + G+ + Q I + GL S Sbjct: 128 VVTASG-YPLADNINIPADTLTVTVAKDGTVSVLQAGQTTPTQIGAIQLATFINSGGLQS 186 Query: 163 VDMSQGFVRRENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + F+ +SG+ +PN P T + +GV + +G++E SN N E+ MI +TQ+ Sbjct: 187 AGENL-FLESASSGVATPNQPGT---NGTGV-LNQGYVETSNVNVAEELVNMI-VTQRAY 240 Query: 222 SITTLIDENEKSML 235 + + + SML Sbjct: 241 EMNSRAIQTSDSML 254 >gi|116331368|ref|YP_801086.1| flagellar basal body rod protein FlgG [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125057|gb|ABJ76328.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 264 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 37/256 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEY 65 +A + + T+++N++N +T GF+ + F ++V G + + + V G Sbjct: 12 IAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVSEIPTGVNVGHGV 71 Query: 66 LSK------EVGSFISTGTELDFALEGD-AWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + E+GSF +TG +LD A+ G+ +F ++ P G +RDG FK+ + +V++ Sbjct: 72 RAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQMPDGSFAFSRDGSFKIDSNQQVVTS 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFN---VGEKGEISQK------GKVIATMGLYSVDMSQG 168 +G + P+ +P+ I N + E+GE++ K VI + LY G Sbjct: 132 NGY-----LLEPPLILPE-GAILNTLMISEQGEVTVKVGADIRPIVIGQVELYRFVNPAG 185 Query: 169 F------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + +E P IP TP + G V +GFLE SN + EM MI + + S Sbjct: 186 LQAIGKNLFQETVASGPEIPGTPGMEGFG-NVLQGFLEMSNVKIVEEMVAMIVAQRAYES 244 Query: 223 ITTLIDENEKSMLEAI 238 + I ++ + AI Sbjct: 245 NSKAIQTSDNMLSTAI 260 >gi|256014942|ref|YP_003104951.1| flagellar basal-body rod protein FlgG [Brucella microti CCM 4915] gi|255997602|gb|ACU49289.1| flagellar basal-body rod protein FlgG [Brucella microti CCM 4915] Length = 262 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 49/244 (20%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T GF+ + +F SE + N +Q I + V Sbjct: 13 AQQLNLE----VIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALV 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GSF TG D AL G WF ++SP G + TR G F DG L Sbjct: 69 GLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQL 128 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ----- 167 V+ G PV ++P P E+ I+ G+V A + + VD+ Q Sbjct: 129 VTLDGN-PVEPAITIP---PDAIEV-------TITDTGQVFAKLQDQINQVDLGQLTLAN 177 Query: 168 -----------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 178 FTNEAGLEPLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRAY 240 >gi|206603526|gb|EDZ40006.1| Putative flagellar basal body rod protein [Leptospirillum sp. Group II '5-way CG'] Length = 267 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 35/249 (14%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQK-- 55 Q F + AQ A EQ + + +N++N +T GF+ +V F + K DQ Sbjct: 3 QAEFALVSGAQ-AQEQLMDVLTNNLANVNTPGFKRDRVTFRTYLPHREWLHKTPSDQPGF 61 Query: 56 ---------ISFVASGKE---------YLSKEVGSFISTGTELDFALEGDAWFALESPRG 97 + +GK+ ++ GSF STG LD A++G+ +F + +PRG Sbjct: 62 RMTPWGEFPTPWGMAGKDVPHAGVDGIHVGYAQGSFRSTGNPLDIAIKGEGFFRILTPRG 121 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK-DEIFNVGEKGEISQKGKVIA 156 +L+R+GRF + G LV+ G Y VL I++P+ V G + + +V+ Sbjct: 122 EVLSRNGRFTLDRGGRLVTHEG-YGVLGEDGKNIRLPESVPGGIRVKADGTVLKGNRVMG 180 Query: 157 TMGLYSVDMSQGFVRRENSGI---SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + + + + + G+ I P D V G E SN N +EM +M Sbjct: 181 RLAVVVPENGTEHLAKVGDGLFMGDGKIAPVADPD-----VLAGGFESSNVNGTFEMVRM 235 Query: 214 IHLTQKFNS 222 I + F + Sbjct: 236 IEAMRSFET 244 >gi|325473455|gb|EGC76650.1| flagellar basal-body rod protein FlgG [Treponema denticola F0402] Length = 270 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 35/263 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV-------GAIKN-----DIDQ 54 + LA +++L +++N++N DT F+ +++ F E++ G IKN DI Sbjct: 10 SGMLAQQRQLDVISNNLANLDTTSFKRDVSVQKSFPELLLRRLNDDGVIKNPFGSSDIAP 69 Query: 55 KISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 I + G E + E GS T + D ALEG +FA+E+P G TR+G F V Sbjct: 70 IIGKLGLGVETNEIFTEFEQGSLKQTSSPADLALEGQGFFAVETPYGEKYTRNGNFMVGV 129 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 +G L++ G YPV+ +I +D + + + G+I + +D + Sbjct: 130 EGYLMTKEG-YPVMGENG---RIFLQDMEYKINQDGQIYVRPITDPESDSVYLDRLKIVE 185 Query: 171 RRENSGISPN----IPPTPL-------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + +S N TPL E S V +GF+E SN N + EM +MI + + Sbjct: 186 FENDRYLSKNGSSFYLDTPLSGRAIAAEGPSRPVVVQGFIEASNVNVVNEMVRMIEVNRA 245 Query: 220 FNSITTLIDENEKSMLEAIRNIA 242 + + I + E +M+ + N A Sbjct: 246 YEANQKSI-QAEDTMMAKLWNEA 267 >gi|322435952|ref|YP_004218164.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] gi|321163679|gb|ADW69384.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] Length = 262 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 116/250 (46%), Gaps = 53/250 (21%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G++AQ A L T+A+N++N+ T GFR+ +V+F +++ A ++ + + Sbjct: 11 GMSAQQA---NLDTIANNLANSATAGFRSRRVQFEDMIYQNMITPGSPATQSTVSAGLQ- 66 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + G + E+ G F T LD A++G +F ++ P G I TR+G F + + G+ Sbjct: 67 IGLGTRTSATEIIQAQGDFNQTQNPLDLAIQGGGFFQIQQPDGTIAYTRNGSFHLNNQGT 126 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK--GKVIATM------------ 158 +++ G M+ +P I IP + G +S G+ A Sbjct: 127 IITTEG------MSLIPSITIPSNATNVTISPYGVVSATLPGQTAAAQLGTLQLANFANP 180 Query: 159 -GLYSVDMSQGFVRRENSGISPNIPPTPLED----LSGV-TVKRGFLEDSNANSMYEMGQ 212 GL S S F + +SG P+ D SGV T+++G+LE+SN + + E Q Sbjct: 181 GGLNSAGNSL-FTQTTSSG-------NPVTDTPGGTSGVGTLEQGYLENSNVDVVTEFVQ 232 Query: 213 MIHLTQKFNS 222 MI + + S Sbjct: 233 MILAQRAYES 242 >gi|294339842|emb|CAZ88205.1| putative flagellar basal-body rod protein FlgF [Thiomonas sp. 3As] Length = 245 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 18/247 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T + A+ L Q+ T +N++N +T G+R + +F + N + Sbjct: 1 MDTLWIAATGARAVLRQQAVTT-NNLANVNTTGYRGEQAQF-RALPVYGNALPTSAYTTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G +E G TG LD A+ G W A+++ G TR+G +V+ G L ++ G Sbjct: 59 QGNSANLQE-GPINHTGRNLDVAIRGSGWIAVQATNGDTAYTRNGDLQVSASGILSTSDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVRRE 173 + PVL + PI +P + + +G G I SQ ++ + V+ ++R Sbjct: 118 R-PVLGQSGAPISVPPLESV-QIGADGTISGVPVGSQPNALVVVNRIQLVNPPPAQMQRG 175 Query: 174 NSGISPNIP-PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL---IDE 229 G+ + P P + V + G LE SN N + M Q++ T+ F T L +D+ Sbjct: 176 ADGLFRDTQGPAPAD--GNVQLAVGALEGSNVNPVQAMIQILDNTRAFEMQTKLMQTVDQ 233 Query: 230 NEKSMLE 236 N ++ + Sbjct: 234 NHQAATQ 240 >gi|315453646|ref|YP_004073916.1| putative flagellar basal-body rod protein [Helicobacter felis ATCC 49179] gi|315132698|emb|CBY83326.1| putative flagellar basal-body rod protein [Helicobacter felis ATCC 49179] Length = 271 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 50/264 (18%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-------------------KISF 58 RL +++N++N +T GF+ V + + +N DQ ++ Sbjct: 18 RLDQISNNLANLNTNGFKRDDVVVGDFLHLYQNYRDQLPLQDQTKQAAKYLNRNLNRVPI 77 Query: 59 VASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 ++ + Y +G+ T +LDFAL + +A+FA+++P+GI TRDG F + G L + Sbjct: 78 IS--ERYTDYSLGAVQKTDGDLDFALSDPNAYFAVQTPQGIAFTRDGSFTIDSQGFLSTK 135 Query: 118 SGKYPVLDMASVP----IQIPQKDEIFNVGEKGEI-------SQKGKVIATMGLYSVDMS 166 G Y VL + IQ+ + +VG G + G IA +G S Sbjct: 136 EG-YHVLSREGLESGGGIQMLPGARV-SVGNSGAVFFHDGNEEVPGGNIAVVGF----QS 189 Query: 167 QGFVRRENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 Q +++ I N+ P E +L+ V +GFLE SN N++ EM ++I + Sbjct: 190 QKLLKK----IGNNLYTYPQERMAERVELNAPIVHQGFLEKSNVNAVREMTRLIEANRLV 245 Query: 221 NSITTLIDENEKSM-LEAIRNIAS 243 + + ++ + M EAI +A+ Sbjct: 246 DMYSKVLRTHMDDMHAEAISKLAT 269 >gi|149911700|ref|ZP_01900308.1| Flagellar basal body rod protein FlgG [Moritella sp. PE36] gi|149805230|gb|EDM65247.1| Flagellar basal body rod protein FlgG [Moritella sp. PE36] Length = 262 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ A +ST+++N++N TVGF+ + F +++ N + S Sbjct: 11 GLEAQQA---NISTISNNLANASTVGFKKERAIFEDLLYQAINQPGGQSSQNTKLPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V SG ++ + G+ ++T LD + G +F +E P G TR+G+F + D+G Sbjct: 68 VGSGARVVATQKDHSQGNMLTTDNSLDLMVSGRGFFEIEMPDGTTSYTRNGQFTLNDEGI 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V+ YP+ IQIP + V E GE+S Sbjct: 128 IVTPGSGYPLQPQ----IQIPADAQTITVSEDGEVS 159 >gi|209521590|ref|ZP_03270288.1| flagellar basal-body rod protein FlgF [Burkholderia sp. H160] gi|209497973|gb|EDZ98130.1| flagellar basal-body rod protein FlgF [Burkholderia sp. H160] Length = 252 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 21/234 (8%) Query: 14 ALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 ALEQ+ + VA+N++N T GFR + + F + G+ ND D +FV S Sbjct: 15 ALEQQ-AIVANNLANASTTGFRAQLETYRAVPMSFGD--GSTIND-DTTRTFVLSSTPGA 70 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G TG LD A++G W ++++ G TR G + ++G LV+A+ + VL Sbjct: 71 DYTPGPIQQTGNPLDVAIQGPGWLSVQTADGNEAYTRAGNLHIDENGQLVNATNQV-VLG 129 Query: 126 MASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISP 179 P+ +P +I +G+ G +S V+ L V+ + R + G+ Sbjct: 130 NGG-PVSVPPGAQI-TIGKDGTVSALTPGDPPTAVVTVDQLKLVNPDPQTLTRSDDGLFR 187 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P + VT+ LE SN N + M MI ++F T L++ +K+ Sbjct: 188 TADGNPADADPTVTLAPASLEGSNVNPVNAMVSMITNARQFQMQTQLLENADKN 241 >gi|78221652|ref|YP_383399.1| flagellar basal body rod protein FlgG [Geobacter metallireducens GS-15] gi|78192907|gb|ABB30674.1| Flagellar basal-body rod FlgG [Geobacter metallireducens GS-15] Length = 262 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 41/236 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + + VA+N++N +T GF+ + F +++ G+ + Q S + Sbjct: 11 GMQAQ---QTNIDVVANNLANVNTAGFKKSRADFQDLMYQNMKTTGSPSTNTTQVPSGIQ 67 Query: 61 SGK----EYLSK--EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G ++K +G+ TG ELD A+EGD ++ ++ P G TR G FK G Sbjct: 68 IGLGAKLAAVTKIFTIGNINQTGNELDMAIEGDGFYQIQMPDGTTTYTRSGAFKRDSQGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIAT-------------M 158 +V++ G YP++ I IP N+G G +SQ G+ T Sbjct: 128 VVTSDG-YPLIP----EIVIPNNATAINIGNDGTVSVSQAGQKSPTNVGNIQLAMFSNPS 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 GL ++ + F ++SG + TP ++ G T + GFLE SN + M EM MI Sbjct: 183 GLLAIGKNL-FQESDSSGNA--TTGTPGQNGLGTTAQ-GFLEMSNVSVMEEMVNMI 234 >gi|146281772|ref|YP_001171925.1| flagellar basal-body rod protein FlgF [Pseudomonas stutzeri A1501] gi|145569977|gb|ABP79083.1| flagellar basal-body rod protein FlgF [Pseudomonas stutzeri A1501] Length = 203 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 26/165 (15%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ TG +LD A+EG+ W A+++P G R G + G L +A G PVL Sbjct: 26 GALQETGRDLDVAIEGEGWVAVQAPDGNEAYVRTGSLNIDALGMLRTADG-MPVLGNGG- 83 Query: 130 PIQIPQKDEIFNVGEKGEISQKG-----KVIAT---MGLYSVDMSQ------GFVRRENS 175 PI IP +E ++G G IS + V+ T + L + D Q G +R ++ Sbjct: 84 PIAIP-PEEKLDIGHDGTISIRALGEDPNVVVTVDRLKLVNPDPQQLEKGTDGLIRMKDG 142 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 PLE + V V GFLE SN N++ EM M+ L+++F Sbjct: 143 --------QPLEADANVRVTSGFLEASNVNAVAEMTSMLALSRQF 179 >gi|197335019|ref|YP_002156699.1| flagellar basal-body rod protein FlgF [Vibrio fischeri MJ11] gi|197316509|gb|ACH65956.1| flagellar basal-body rod protein FlgF [Vibrio fischeri MJ11] Length = 249 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 39/226 (17%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------ 70 Q + ++N++N T GFR D++Q S A G E L V Sbjct: 17 QAMQLRSNNLANVSTTGFRA--------------DLEQARSMQAYG-EGLPTRVFNMTER 61 Query: 71 -------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 GS I+TG +LD +EGD W ++ G LTR G K+ + G L++ SG + Sbjct: 62 PGSSFSQGSVITTGRDLDLTIEGDGWISVMDNTGREGLTRAGNLKIDETGLLMNGSG-HL 120 Query: 123 VLDMASVPIQIP--------QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 VL PI +P KD +V E+G ++ + + L D ++ + N Sbjct: 121 VLGENDAPITLPLPIAKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKTD-NRDLFKDTN 179 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P + + +T+ G LE SN N++ EM +I L ++F Sbjct: 180 GLFRSKNPGATFDADANITLLSGALEGSNVNAVGEMTNLIDLQRQF 225 >gi|167585195|ref|ZP_02377583.1| flagellar basal-body rod protein FlgF [Burkholderia ubonensis Bu] Length = 252 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 22/239 (9%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISFVASGKEYL 66 A AL+Q+ + VA+N++N T GFR + V + D ++V S Sbjct: 12 ASQALDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSTIDPTTTRTYVLSSTPGS 70 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G TG LD A++G W +++ G TRDG V DG LV+AS PV+ Sbjct: 71 DFAPGPISRTGNPLDVAVQGAGWLSVQLADGSEAYTRDGNLHVNQDGQLVNAS-NLPVVG 129 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRRENSGI 177 PI +P E+ +G+ G +S +I M L + D + + R N G+ Sbjct: 130 NGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAMIDQMKLVNPDPAT--ITRGNDGL 185 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F + +I D+NE+S Sbjct: 186 FRTTDGNPADADPNVVVVPNSLEGSNVNPVNAMVAMIDNARAFQLQSKMIQTADQNEQS 244 >gi|254698165|ref|ZP_05159993.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] Length = 246 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 45/235 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKI----SFVASGKEYLSK 68 L +A+N++N +T GF+ + +F SE + N +Q I + V G + + Sbjct: 2 LEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALVGLGVQTAAV 61 Query: 69 E----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 GSF TG D AL G WF ++SP G + TR G F DG LV+ G PV Sbjct: 62 RNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQLVTLDGN-PV 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ-------------- 167 ++P P E+ I+ G+V A + + VD+ Q Sbjct: 121 EPAITIP---PDAIEV-------TITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGLEP 170 Query: 168 --GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G + RE + P + G ++K+G+LE SN + + E+ +I + + Sbjct: 171 LGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITAQRAY 224 >gi|238927618|ref|ZP_04659378.1| possible flagellar basal-body rod protein [Selenomonas flueggei ATCC 43531] gi|238884543|gb|EEQ48181.1| possible flagellar basal-body rod protein [Selenomonas flueggei ATCC 43531] Length = 266 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/225 (22%), Positives = 109/225 (48%), Gaps = 11/225 (4%) Query: 19 LSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 L + D+ ++TD F+ +++ + +VG + + + +A+ ++L G+ +TG Sbjct: 49 LRRINDHSADTDVTSFKGFRLRSGAPIVGTLG--LGSAVDEIAT--DHLQ---GALQATG 101 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 DF + G +F +++P+G TRDG F + G L + G+ VL PI IP Sbjct: 102 NTYDFGISGQGYFVVDTPQGPRYTRDGSFYRSSTGQLQTVRGQ-AVLSAQGQPITIPATA 160 Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 V G I G+ IA +G D + +++ ++ + + +GV +++G Sbjct: 161 HHVTVSSDGRIYSDGRQIAQLGFVQFDEPKAVIKQGDN-LYRPQQGAQPQQATGV-IEQG 218 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN + + EM ++I+ + + + + + + + +A+ ++ Sbjct: 219 MLEMSNTSVVTEMVELINNYRVYEAGSKAVQTQDTLLDKAVNDVG 263 >gi|91785633|ref|YP_560839.1| flagellar basal body rod protein FlgF [Burkholderia xenovorans LB400] gi|91689587|gb|ABE32787.1| flgF; flagellar basal-body rod protein [Burkholderia xenovorans LB400] Length = 252 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 17/232 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSK 68 ALEQ+ + VA+N++N T GFR F V G+ ND + +FV S Sbjct: 15 ALEQQ-AIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR-TFVLSSTPGADY 72 Query: 69 EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A++G W A+++ G TR G + ++G LV+A+ + VL Sbjct: 73 TPGPIQQTGNPLDVAIQGPGWLAVQTADGGEAYTRAGNLHIDENGQLVNATNQV-VLGNG 131 Query: 128 SVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 P+ +P EI +G+ G +S V+ L V+ + R + G+ Sbjct: 132 G-PVSVPPGAEI-TIGKDGTVSALTPGDPPTAVVTVDQLKLVNPDPQTMTRGDDGLFRTG 189 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P + VT+ LE SN N + M MI ++F T L++ +K+ Sbjct: 190 DGNPADADPTVTLAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLESADKN 241 >gi|59712480|ref|YP_205256.1| flagellar basal body rod protein FlgF [Vibrio fischeri ES114] gi|24459278|gb|AAL86631.1| FlgF [Vibrio fischeri ES114] gi|59480581|gb|AAW86368.1| flagellar proximal rod protein FlgF [Vibrio fischeri ES114] Length = 249 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 39/226 (17%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------ 70 Q + ++N++N T GFR D++Q S A G E L V Sbjct: 17 QAMQLRSNNLANVSTTGFRA--------------DLEQARSMQAYG-EGLPTRVFNMTER 61 Query: 71 -------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 GS I+TG +LD +EGD W ++ G LTR G K+ + G L++ SG + Sbjct: 62 PGSSFSQGSVITTGRDLDLTVEGDGWISVMDNTGREGLTRAGNLKIDETGLLMNGSG-HV 120 Query: 123 VLDMASVPIQIP--------QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 VL PI +P KD +V E+G ++ + + L D ++ + N Sbjct: 121 VLGENDAPITLPLPIAKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKTD-NRDLFKDTN 179 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P + + +T+ G LE SN N++ EM +I L ++F Sbjct: 180 GLFRSKNPGATFDADANITLLSGALEGSNVNAVGEMTNLIDLQRQF 225 >gi|297182936|gb|ADI19085.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0070_15B21] Length = 262 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKIS---F 58 G+AAQ ++ + T A+N++N +T G++ KV F +++ + + + ++ Sbjct: 11 GMAAQ---QRNIDTTANNLANVNTTGYKKSKVHFQDLLYHNERTAGVPSSVSTQVPVGLH 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G +++ E G+ +TG +LD +++G +F + P GI+ +RDG F + G Sbjct: 68 VGHGVKFIGTEKIHTQGNLENTGNDLDLSIDGHGFFQILQPNGIVGYSRDGHFNIDGMGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 LV+ G +LD I IPQ VG G ++ + I ++ L Sbjct: 128 LVTNDGM--LLDPE---INIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSIQLARFQNPA 182 Query: 168 GFVRR-ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 G +N +S + D G T+ +GFLE SN + + EM MI +Q+ Sbjct: 183 GLTPLGKNLYVSTPASGNAIVDAPGASSMGTLTQGFLERSNVSLVEEMVNMI-TSQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 + + ++ ML+ N+ Sbjct: 242 VNSKAIQSADEMLKNTNNL 260 >gi|187926952|ref|YP_001893297.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12J] gi|241665281|ref|YP_002983640.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] gi|187728706|gb|ACD29870.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12J] gi|240867308|gb|ACS64968.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] Length = 260 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 45/260 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---------IDQKIS 57 A + +L +++N++N +T GF+ + F +++ GA + I + Sbjct: 14 AQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQTTLPSGMQIGTGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ E L + G+ TG D A+ G+ +F ++ P G + TRDG F+V G LV+ Sbjct: 74 IVAT--ERLHTQ-GNLQQTGNATDVAINGNGFFQVQMPDGTLAYTRDGSFQVNAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLY 161 +SG YP+ I +PQ F+VG+ G ++ Q I GL Sbjct: 131 SSG-YPI----QPAITVPQNATSFSVGKDGVVTVTTPGSVNNTQVGTFQLANFINPAGLR 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 S+ + + E SG + N+ P + GV + + ++E SN N + EM MI TQ+ Sbjct: 186 SMGENL-YAETEASGTA-NL-ANPGSNGVGV-LNQNYVETSNVNVVEEMVNMIQ-TQRAY 240 Query: 222 SITTLIDENEKSMLEAIRNI 241 I + + MLE + + Sbjct: 241 EINSKSVQTSDQMLEKLSQL 260 >gi|296157455|ref|ZP_06840290.1| flagellar basal-body rod protein FlgF [Burkholderia sp. Ch1-1] gi|295892227|gb|EFG72010.1| flagellar basal-body rod protein FlgF [Burkholderia sp. Ch1-1] Length = 252 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 17/232 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSK 68 ALEQ+ + VA+N++N T GFR F V G+ ND + +FV S Sbjct: 15 ALEQQ-AIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR-TFVLSSTPGADY 72 Query: 69 EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A++G W A+++ G TR G + ++G LV+A+ + VL Sbjct: 73 TPGPIQQTGNPLDVAIQGPGWLAVQTTDGGEAYTRAGNLHIDENGQLVNATNQV-VLGNG 131 Query: 128 SVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 P+ +P EI +G+ G +S V+ L V+ + R + G+ Sbjct: 132 G-PVSVPPGAEI-TIGKDGTVSALTPGDPPTAVVTVDQLKLVNPDPQTMTRGDDGLFRTG 189 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P + VT+ LE SN N + M MI ++F T L++ +K+ Sbjct: 190 DGNPADADQTVTLAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLESADKN 241 >gi|261420740|ref|YP_003254422.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|319768410|ref|YP_004133911.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261377197|gb|ACX79940.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317113276|gb|ADU95768.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 273 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 34/239 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVASGKEY------ 65 AL++RL T++ N++N++TVGF+ + F+E++ + + D+ +G Y Sbjct: 14 ALQERLDTISHNIANSNTVGFKRREASFAELLTQQIDRLPNDEAPRETPAGVRYGNGARL 73 Query: 66 ----LSKEVGSFISTGTELDFALEGD-AWFALE-----SPRGIILTRDGRFKVT---DDG 112 L + G+ + TG LDFAL + WF + I TR G F + + Sbjct: 74 ASTMLITKQGALVETGRRLDFALTAENQWFRVRLADQSGAETIGYTRAGNFSLAPMNGEL 133 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---GKVIA--TMGLYSVDMSQ 167 +L ++ G + VLD + PI +P V G ++ G+V+A +G+ + Q Sbjct: 134 ALTTSDGLF-VLDERNAPIVLPADAHDVQVSPTGTLTATNADGRVVARVNLGVTVIRRPQ 192 Query: 168 GF-VRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 R N PN+P E+L+G ++VK+G LE SN + EM ++ ++ + Sbjct: 193 LLEARGGNVYALPNVPGAA-EELNGNLRGQISVKQGALEQSNVDLGEEMVGLMATSRAY 250 >gi|288962673|ref|YP_003452967.1| flagellar hook protein [Azospirillum sp. B510] gi|288914939|dbj|BAI76423.1| flagellar hook protein [Azospirillum sp. B510] Length = 427 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+AAQ RL+ ++DN+SN+ TVG++ V FS +V A + S V S Y Sbjct: 13 GMAAQ---SSRLAAISDNISNSQTVGYKRATVDFSTLVTAPGDRTSYSASGVQSNLHYQM 69 Query: 68 KEVGSFISTGTELDFALEGDAWF-----ALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 ++ G+ + TG+ D A+ GD +F A +P LTR G F D G L + +G+Y Sbjct: 70 QQDGTLLGTGSSTDMAISGDGFFVVGNRATGTPD-YALTRAGSFLPDDGGFLRNTAGQY 127 >gi|118444095|ref|YP_878000.1| flagellar basal body rod protein FlgG [Clostridium novyi NT] gi|118134551|gb|ABK61595.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] Length = 258 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 115/230 (50%), Gaps = 25/230 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+AA++ ++L+T+++NM+N+ TVG++ + VKF+++ ++ ++D+ V GK + Sbjct: 11 GMAAEM---EKLNTISNNMANSTTVGYKRVDVKFNDL---MQENLDRLGYPVTKGKPQFT 64 Query: 68 ------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G+ + TG D A++G+ +F ++ G TR G F + + G++ Sbjct: 65 GTGVRATEIERDNSQGNLLQTGNNTDIAIDGEGFFKVQDGEGRTFYTRGGSFNIDNLGTV 124 Query: 115 VSASG-KYPVLDMASVPIQIPQ---KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 V SG + +L+ A V + P K+ F + E+G + KG + ++ + Sbjct: 125 VDKSGNRLIILNEAGVNVNKPGIGFKNSSFIINEEGYVVGKGNENLRIPIFEPKGNDCMK 184 Query: 171 RRENSGISPNIPPTPLE-DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 ++ N P +E D ++ +G+ E SN + EM +I +TQ+ Sbjct: 185 SIGDNLYVCNEPNLIVEKDTKDFSLLQGYTEQSNVDLGKEMADLI-ITQR 233 >gi|296534159|ref|ZP_06896653.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] gi|296265514|gb|EFH11645.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] Length = 248 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 116/238 (48%), Gaps = 14/238 (5%) Query: 11 AQLALEQRL-STVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKISFVASGKEY 65 ++LA +QR + +A N++N DT G+++ ++ F + G ++++F + Sbjct: 10 SRLAAQQRATAALAMNIANADTPGYKSAQMVFGAHIDRQLGVDAPRGGREVAFSQDRATW 69 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 GS +TG LD AL G+ +FA+++ G TR GRF ++ +G +V G PVL+ Sbjct: 70 RDFTPGSLQATGNPLDLALGGEGFFAVQTGNGERYTRAGRFALSPEGGIVDIGGN-PVLN 128 Query: 126 MASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRRENSGISP-NIPP 183 P+ +P + ++ G + +++G V + D + + E +P +P Sbjct: 129 EDGAPLVLPPNAQRIDITGDGTVRTEQGPVGRLRVVNFADPQKLIAQGERLFEAPAELPA 188 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID---ENEKSMLEAI 238 P++ V +G +E SN S+ E+ ++ ++F + ++ + K+ +E I Sbjct: 189 QPVD---APRVVQGSVEGSNVQSIVELTRLTAEMREFQFASQFVETEGDRAKTAVERI 243 >gi|254785374|ref|YP_003072803.1| flagellar basal body rod protein FlgG [Teredinibacter turnerae T7901] gi|237683455|gb|ACR10719.1| flagellar basal-body rod protein FlgG [Teredinibacter turnerae T7901] Length = 261 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 40/257 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GLAAQ + +L+TVA+N++N TVGF+ + F +++ I+ Sbjct: 11 GLAAQ---DTKLTTVANNLANASTVGFKRDRAVFEDLLYQIQRQPGAQNTEDTQLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K++ + GS T LD A++G +F + P G I TR G+F +++ Sbjct: 68 LGTGVRVVGTQKQF---DYGSLQVTNQPLDVAIDGRGFFQILQPDGTIGYTRAGQFHLSN 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G +V +G + I IP E +G G +S + +A + + FV Sbjct: 125 QGEIVDPTGL-----LLQPAITIPDNAESVTIGTDGTVSARIAGVAAPAILGNIQTVDFV 179 Query: 171 RREN-SGISPNI------PPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQK 219 I N+ P++ + G V++G LE+SN + + EM MI TQ+ Sbjct: 180 NPAGLQAIGGNLFLETAASGNPIQGIPGQNGLGQVEQGMLENSNVDIVEEMVNMI-TTQR 238 Query: 220 FNSITTLIDENEKSMLE 236 + + I ML+ Sbjct: 239 AYEMNSKIVSTADQMLQ 255 >gi|241113584|ref|YP_002973419.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861792|gb|ACS59458.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 430 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 25/123 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++AQ RLSTV+DN++N +T G++ + FS +V G ++ + Q IS Sbjct: 13 GMSAQ---ANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGVQTSVRQAIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G T + D A+ GD +F +ES G +LTR G F V DG+LV+ Sbjct: 70 -----------QQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVN 118 Query: 117 ASG 119 +G Sbjct: 119 GAG 121 >gi|42526517|ref|NP_971615.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] gi|41816710|gb|AAS11496.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] Length = 270 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 35/263 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV-------GAIKN-----DIDQ 54 + LA +++L +++N++N DT F+ +++ F E++ G IKN DI Sbjct: 10 SGMLAQQRQLDVISNNLANLDTTSFKRDVSVQKSFPELLLRRLNDDGVIKNPFGSSDIAP 69 Query: 55 KISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 I + G E + E GS T + D ALEG +FA+E+P G TR+G F + Sbjct: 70 IIGKLGLGVETNEIFTEFEQGSLKQTSSPADLALEGQGFFAVETPYGEKYTRNGNFMIGV 129 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 +G L++ G YPV+ +I +D + + + G+I + +D + Sbjct: 130 EGYLMTKEG-YPVMGENG---RIFLQDMEYKINQDGQIYVRPITEPESDSVYLDRLKIVE 185 Query: 171 RRENSGISPN----IPPTPL-------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + +S N TPL E S V +GF+E SN N + EM +MI + + Sbjct: 186 FENDRYLSKNGSSFYLDTPLSGKAIAAEGPSRPVVVQGFIEASNVNVVNEMVRMIEVNRA 245 Query: 220 FNSITTLIDENEKSMLEAIRNIA 242 + + I + E +M+ + N A Sbjct: 246 YEANQKSI-QAEDTMMAKLWNEA 267 >gi|170755157|ref|YP_001782254.1| flagellar basal body rod protein FlgG [Clostridium botulinum B1 str. Okra] gi|169120369|gb|ACA44205.1| flagellar basal body rod protein [Clostridium botulinum B1 str. Okra] Length = 263 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 41/241 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KNDIDQKIS 57 GL AQ + +L ++++N++N +TVG++ V F E+V + +I Sbjct: 11 GLIAQ---QNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRPEIQTGTG 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 A+ + + G ++TG + D A++G +F + P G R G F V +G LV Sbjct: 68 VKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMPDGNYAYERSGNFVVDRNGMLVD 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEIF-----------NVGEKGEISQK-----GKVIATMGL 160 +G + + +Q P+ +I N+ E G IS K K++ + + Sbjct: 128 ENG-----NRLEIQLQQPEGSQILNRIGEFSKNNINIAEDGSISVKDIDGINKMVGKINI 182 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMYEMGQMIHLTQ 218 Y+ S FV + G + IP + + V++ +GFLE+SN ++ EM +MI +TQ Sbjct: 183 YNAVGSDAFV---SIGRNLYIPQEGVNVFANNDVSILQGFLENSNVDAGKEMTEMI-ITQ 238 Query: 219 K 219 + Sbjct: 239 R 239 >gi|254437478|ref|ZP_05050972.1| hypothetical protein OA307_2348 [Octadecabacter antarcticus 307] gi|198252924|gb|EDY77238.1| hypothetical protein OA307_2348 [Octadecabacter antarcticus 307] Length = 253 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 105/252 (41%), Gaps = 32/252 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +I L + L + A NM+N + GFR E D Q + Sbjct: 1 MDRNIHIALNSMRNLSTEMRVNAQNMANLNVPGFRADLTVTREASFLTSLDQYQSRVYSQ 60 Query: 61 SGKEYL-SKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 +E L S + GS STG+E+D A+ G+ +F +E G L+R G D LV Sbjct: 61 QSQEALFSDDAGSLQSTGSEMDTAIRGNGYFFVEPALGGDAALSRRGDLGFDDGRFLVDG 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----------GKVIATM---GLYSV 163 +G +LD PIQ+P I V E G+I + G +IAT G+ + Sbjct: 121 AGNR-LLDTELAPIQMPPTRRIV-VEETGQIQMELMGTPEGTLVAGPIIATSMAEGISLI 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM------YEMGQMIHLT 217 G +R N+ P E + +GFLE SN N++ E + ++ Sbjct: 179 KSPDGHIRPSNNTELP-------EPDQRARIAQGFLESSNVNTISALIKNIESQRHFEMS 231 Query: 218 QKFNSITTLIDE 229 KF ++ IDE Sbjct: 232 VKFIALAKEIDE 243 >gi|319787119|ref|YP_004146594.1| flagellar basal-body rod protein FlgG [Pseudoxanthomonas suwonensis 11-1] gi|317465631|gb|ADV27363.1| flagellar basal-body rod protein FlgG [Pseudoxanthomonas suwonensis 11-1] Length = 261 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 118/263 (44%), Gaps = 44/263 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKN--------D 51 GL AQ + R+S VA+N++NT+T GF+ + F +++ G+ Sbjct: 11 GLDAQ---QTRMSVVANNLANTNTTGFKRDRANFEDLLYQQVRQPGGSTSAQTQLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 + + V++ K++ + G+ TG LD + G +F + P G TRDG F+V Sbjct: 68 LGTGVRVVSTAKDF---QQGNPQQTGRALDVMINGRGFFEVLMPDGTSAYTRDGSFQVNA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATMGLYSVDM- 165 G LV++SG YPV IQ+P+ + +G G I+ + G+ + L D Sbjct: 125 QGELVTSSG-YPV----QPGIQVPEGAQSMTIGTDGTITVQMAGDGQALEIGALTLTDFI 179 Query: 166 -SQGFVRR------ENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 G R E + P TP L+G+ V++G LE SN N + E+ MI T Sbjct: 180 NPAGLQARGENLYMETTASGPAQNGTP--GLNGLGLVEQGALEGSNVNVVEELVSMIE-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRN 240 Q+ + SML + N Sbjct: 237 QRAYEMNAKAISTTDSMLGYLNN 259 >gi|304317904|ref|YP_003853049.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779406|gb|ADL69965.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 19/178 (10%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ T +LDFA++G +F + +P GI TRDG F + +G LV+ G Y + P Sbjct: 82 GNIEKTDGKLDFAIDGSGFFTVSTPNGIRYTRDGSFTLNSNGYLVTKDGYYVMGQNG--P 139 Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ-GFVRRENSGI-----SPNIPPT 184 IQ+ D +V + G IS G+ + + + VD S +R+E + + IP + Sbjct: 140 IQLNNGD--ISVDDFGNISLNGQTVNKLNI--VDFSNYSTLRKEGNNLFFTTGGQAIPAS 195 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 VK+G+LE SN N + EM MI + + + + ++++ +A+ + Sbjct: 196 G-------AVKQGYLEGSNVNPVDEMVTMISAMRTYEANQKTVSAFDETLDKAVNEVG 246 >gi|254519398|ref|ZP_05131454.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] gi|226913147|gb|EEH98348.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] Length = 260 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 30/253 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR--TIKVK-FSEVVGAIK------ND 51 M S ++ ++LE R + + +NMSN +T GF+ + +K F EV+ + N+ Sbjct: 1 MIRSLYTAVSGLISLENRQNNITNNMSNANTTGFKGDNLSIKSFDEVMIQNRDKVVNGNN 60 Query: 52 IDQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG----IILTRD 103 + QK+ ++ G E S + G +T + DFA+EG +FA++ +I TRD Sbjct: 61 VVQKLGSISLGAEIDSVDTAFTQGLIKNTDKQTDFAIEGRGFFAIQRQTNNGNEVIYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI----ATMG 159 G FKV +DG L++ + VL M + IF G+K + Q + AT Sbjct: 121 GNFKVGNDGYLINTNSD-RVLGMNK---NTGALEPIFVGGDKFILDQNNNLYIGNRATHT 176 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L + D + + E G + P+ + V V +G LE SN N EM MI + Sbjct: 177 LATADFND-YGSLEKIGDNYFKGENPIYNAQ-VWVTQGALEGSNVNISNEMVNMITTMRN 234 Query: 220 FNS---ITTLIDE 229 F + I IDE Sbjct: 235 FETNQKIVQTIDE 247 >gi|225181585|ref|ZP_03735026.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] gi|225167693|gb|EEG76503.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] Length = 251 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 46/252 (18%) Query: 18 RLSTVADNMSNTDTVGF-RTIKVKFSEVVGAIKNDIDQK-------ISFVASGKE----Y 65 R T+ +N++N++T GF R + ++ S + D++ I + G + Sbjct: 18 RQETITNNLANSETTGFKRDLALQRSHGEQPVVRLGDRQPFGVRPVIGSLGVGSLIDGIH 77 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 S E GS TG +LD A+ GD +F +E+ +G+ TR+G F + D LV+ G + V+ Sbjct: 78 TSHEQGSLQETGRDLDVAMAGDGYFVVETEQGLRYTRNGAFSIDADRMLVNDQG-HRVMG 136 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR----ENSGI---- 177 P+Q+P GE +I Q G V D QG + R +NS + Sbjct: 137 TTG-PLQLP-------AGEV-QIDQAGNVFVN------DAMQGQLARVSFADNSELQKVG 181 Query: 178 ------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + P+ + VK+GFLE SN ++ EM QM+ + + + ++ + Sbjct: 182 DSLFTAAEGAEQQPVTGM----VKQGFLEGSNVQAVQEMVQMLAAMRAYETNQRVVQAQD 237 Query: 232 KSMLEAIRNIAS 243 + +A IA+ Sbjct: 238 DMLRKATNEIAA 249 >gi|116248740|ref|YP_764581.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae 3841] gi|115253390|emb|CAK11778.1| putative flagellar hook protein flgE [Rhizobium leguminosarum bv. viciae 3841] Length = 430 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 25/123 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++AQ RLSTV+DN++N +T G++ + FS +V G ++ + Q IS Sbjct: 13 GMSAQ---ANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGVQTSVRQAIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G T + D A+ GD +F +ES G +LTR G F V DG+LV+ Sbjct: 70 -----------QQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVN 118 Query: 117 ASG 119 +G Sbjct: 119 GAG 121 >gi|221635450|ref|YP_002523326.1| flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Thermomicrobium roseum DSM 5159] gi|221157298|gb|ACM06416.1| flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Thermomicrobium roseum DSM 5159] Length = 248 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 20/223 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR----TIKVKFSEVV-----GAIKNDIDQKISF 58 G+ AQ A R T+A N++N +T G+R TI+ F ++ + I + Sbjct: 11 GMMAQFA---RQLTLATNLANIETPGYRQQESTIR-DFQQMFLLRLGRGEASPIGTLSTA 66 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V K + GS I TG LD AL G A+FA+++P G+ TRDGRF++ LV+A Sbjct: 67 VRWDKPLVDLRQGSLIETGRPLDLALAGRAFFAIQTPDGVEYTRDGRFQLDAQRRLVTAD 126 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G +PVL P+ +P D V G I +V+ + L F + Sbjct: 127 G-HPVLGEQG-PLVLPAGD--IWVEPDGTILVGEQVVGRLLLVEFPPDAQFEPVAGNRYR 182 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + P E V +GFLE SN + + M+ T+ + Sbjct: 183 TDATGAPSETTG---VSQGFLEASNVDLTQTLTDMLAATRSYQ 222 >gi|260437440|ref|ZP_05791256.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] gi|292810072|gb|EFF69277.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] Length = 256 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 21/239 (8%) Query: 17 QRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKND-----IDQKISF----VASGKE 64 +RL V++N++N+ T ++ F +++ ND ID+ I + V G+ Sbjct: 17 KRLDVVSNNLANSATTAYKKEGATSQAFKDMLAIKINDETDSYIDRPIGYMSLGVKIGET 76 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFAL-----ESPRGIILTRDGRFKVTDDGSLVSASG 119 Y G+ TG D AL G+ +FA+ + TRDG F V +G L++ G Sbjct: 77 YTDYSTGNLRETGNTYDLALSGNGFFAISYADKNGTESVRYTRDGSFTVNSEGILMTKDG 136 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + + D + I IP E+ ++ E G I G+ +A + + + ++++ + Sbjct: 137 DFVLGDDGGL-ITIPVGTEV-SINESGIIEADGEEVARLQITDFE-DYDYLKKFGENMYT 193 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 I + G V +G+LE SN N + EM MI + + + S +I + ++ A+ Sbjct: 194 AIDGATTKAAQG-KVYQGYLESSNVNVVSEMVNMITIARDYESSQKVIQSIDSTLERAV 251 >gi|163784307|ref|ZP_02179217.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] gi|159880425|gb|EDP74019.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] Length = 238 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 14/230 (6%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVK-FSEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 ALEQ L T +N++N +T GF+ + +K S+ + + + F K + GS Sbjct: 18 ALEQ-LDTTTNNLANVNTPGFKKLLLKEMSQKIPDNQGQSKELFVFPRFEKTPVVIAQGS 76 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 T LD A++G+ +F + I LTR+G FK+ G LV + PVLD I+ Sbjct: 77 LKKTDRPLDLAIDGEGFFQVRFQNQIFLTRNGHFKLDSTGILVDVNSN-PVLDTQGKVIK 135 Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + + + + + G I Q +++A + + + + G S P + + S Sbjct: 136 LNSTENV-TITKDGSIYQNNELVAKLSIVNYQSVKPI------GESYYAPSSSQTNAS-Y 187 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQK---FNSITTLIDENEKSMLEAIR 239 + +GFLE+SN N + M ++I+ ++ + ++ +D E+ +E R Sbjct: 188 EIHQGFLENSNVNPIKAMTELINAQRRMEMYGNLMKALDSVEQKSIEIGR 237 >gi|56695100|ref|YP_165447.1| flagellar basal body rod protein FlgG [Ruegeria pomeroyi DSS-3] gi|56676837|gb|AAV93503.1| flagellar basal-body rod protein FlgG [Ruegeria pomeroyi DSS-3] Length = 261 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 44/244 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKIS--- 57 G++AQ + R+ T+++N++N +T G+ + +F+++ G + N D + Sbjct: 10 GMSAQ---QMRVETISNNLANMNTTGYNARRAEFADLHYQQIARAGTV-NASDGTVLPTG 65 Query: 58 -----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 V + E G+ +TG +LD A+EG +F + P G TRDG K + + Sbjct: 66 VQLGLGVRPAAVTVHLEQGALSATGNDLDLAIEGRGYFEVTLPSGQSAFTRDGSLKRSAE 125 Query: 112 GSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVD 164 G +V++ G ++ VP I IP ++ GE+ + +G+++ + L Sbjct: 126 GLIVTSDG------LSVVPEITIPSDARSISINAAGEVYAYFDDAAEGQLLGQVTLAGFT 179 Query: 165 MSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 ++G F E SG SP I P ED G T+++G+LEDS+ +++ E+ ++I Sbjct: 180 NAKGLEAIGSNLFKETEASG-SP-ITGNPGEDGLG-TLRQGYLEDSSVDAVREVTELIEA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRGY 240 >gi|330893070|gb|EGH25731.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. mori str. 301020] Length = 202 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 28/159 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GLAAQ + L+T+++N++N T GF++ + +F +++ IK Sbjct: 23 GLAAQ---DTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 79 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G + +RDG F + Sbjct: 80 LGTGVRIVGTQKNFTA---GSLQTTNNPLDLAVNGRGFFQVTQPDGTVAYSRDGTFHLDA 136 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +G +V+A+G L+ A I +PQ + F VG+ G +S Sbjct: 137 NGQIVTANGY--ALEPA---IVVPQNAQTFTVGQDGTVS 170 >gi|157363239|ref|YP_001470006.1| flagellar basal-body rod protein FlgG [Thermotoga lettingae TMO] gi|157313843|gb|ABV32942.1| flagellar basal-body rod protein FlgG [Thermotoga lettingae TMO] Length = 261 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 33/246 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S A + +L T+++N++N DT G++ ++ +F ++V A+ + Sbjct: 1 MMVSLYSAATGMWAQQYKLDTISNNLANVDTTGYKKVRAEFQDLVYQYYKNAGTPTAVNS 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I I F + + ++ G+ TG LD A+ GD +F ++ G TRDG F Sbjct: 61 TIPTGIYFGHGTRLSATTKIFSLGNMEYTGNALDVAITGDGFFQVQLQDGRTAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---QKGKV--IATMGL 160 KV +G +V+++G +A +P I +P N+ G S Q G V + T+ L Sbjct: 121 KVDSEGRVVTSNG------LALIPNIVVPADAVAINISPDGIFSAEMQDGTVQNLGTITL 174 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + I TP +D G +++G+LE +N + + EM MI Sbjct: 175 VRFVNPSGLKAVGDNLYLETTASGEPIEGTPNQDGFGA-LQQGYLEKANVDVVKEMVDMI 233 Query: 215 HLTQKF 220 + + Sbjct: 234 TAQRAY 239 >gi|153011524|ref|YP_001372738.1| flagellar basal body rod protein FlgG [Ochrobactrum anthropi ATCC 49188] gi|151563412|gb|ABS16909.1| flagellar basal-body rod protein FlgG [Ochrobactrum anthropi ATCC 49188] Length = 262 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 49/244 (20%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T GF+ + +FS+++ + N +Q I + V Sbjct: 13 AQQLNLE----VIANNIANINTTGFKRARAEFSDLLYQSERTAGVPNQANQSIVPEGALV 68 Query: 60 ASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GSF TG D AL G WF ++SP G + R G F DG L Sbjct: 69 GLGVQTAAVRNLHMQGSFNQTGNPFDLALTGKGWFQIQSPTGETLYARAGAFNKNADGQL 128 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ----- 167 V+ G PV ++P P E+ ++ G+V A + + VD+ Q Sbjct: 129 VTLDGN-PVEPAITIP---PDAVEV-------TVTDTGQVFAKLQDQVNQVDLGQLTLAN 177 Query: 168 -----------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 178 FTNEAGLEPLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRAY 240 >gi|317121025|ref|YP_004101028.1| flagellar basal-body rod protein FlgF [Thermaerobacter marianensis DSM 12885] gi|315591005|gb|ADU50301.1| flagellar basal-body rod protein FlgF [Thermaerobacter marianensis DSM 12885] Length = 249 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 29/249 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGF---RTIKVKFSEV-VGAIKNDIDQKISFVASG- 62 G+ A++ ++RL A++++N +T G+ R + F E+ V ++ + V +G Sbjct: 11 GMLARVLQQERL---ANDLANVNTPGYKASRNVTEAFPELFVARLERAGAAPVGPVGTGA 67 Query: 63 ---KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + L G ++ TG D AL GD +F + P G TR G F V +G L + G Sbjct: 68 VVAEPGLDLTAGPWLETGRPQDLALAGDGFFVVMGPAGPAYTRAGNFTVGPEGYLQTPDG 127 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR------E 173 +PVL P+ + D F V G++ G V+ T+ + + + Sbjct: 128 -WPVLGTDGQPLLVGTAD--FTVTPDGQVQAGGVVVGTVARVTFANPAALRKAGDNLLVD 184 Query: 174 NSGISPNIP-PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G P +P TP V++G LE SN + + + +M+ + F + + ++ Sbjct: 185 PGGAGPAVPVDTP--------VRQGVLEQSNVDPVRTVVEMLANFRAFEASQRAVQAQDQ 236 Query: 233 SMLEAIRNI 241 ++ AI+ + Sbjct: 237 TLGLAIQEV 245 >gi|301168104|emb|CBW27690.1| putative flagellar hook protein [Bacteriovorax marinus SJ] Length = 426 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIG+ A+ Q + + DN++N T GF++ + +F +V+ ID F A K Sbjct: 6 SFNIGVTGLNAVGQGMGVIGDNIANAGTNGFKSSRAEFQDVLATSLKGIDGGDQFGAGTK 65 Query: 64 EYLSKEV---GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 K + G T D A+ GD +F + +P G TRDG F +G LV++ G Sbjct: 66 LAHIKTLMTQGDVARTDNITDLAVNGDGFFKVNAPFGKGFTRDGSFHFNKEGELVNSDG- 124 Query: 121 YPVL 124 Y V+ Sbjct: 125 YQVI 128 >gi|332980934|ref|YP_004462375.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] gi|332698612|gb|AEE95553.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] Length = 264 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 28/236 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR--TIKVKFSEVVGAIKNDIDQKI----------- 56 A ++ + + T+A+N++N DT F+ T ++ V + I Q Sbjct: 10 AGLISQQYNVDTIANNIANVDTTAFKRNTAHIEDMPYVYKLNPAIRQADNEGLLPHMGTG 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT----DD 111 + V S +Y ++ G T LD ++G A+FA+ +G + TRDG FK+T +D Sbjct: 70 ARVVSSPKYFAQ--GPMQQTERNLDLGIDGTAFFAVTDGQGNVFYTRDGNFKLTETEGED 127 Query: 112 G---SLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G S ++ + Y +LD I+IP + ++ G + +G IA + L Sbjct: 128 GRIHSYITTANGYWLLDTEGARIEIPAGTIEGDISIDPSGAVMVEGAHIADIALVEFTNP 187 Query: 167 QGFVRRENS--GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 Q R ++ ++ N+ P L D V++GFLE SN + EM +MI + + Sbjct: 188 QALETRGDNLYAVTDNVGPNYLTD-GDSKVRQGFLEASNVDIADEMARMIRAQRAY 242 >gi|254516991|ref|ZP_05129049.1| flagellar basal-body rod protein FlgG [gamma proteobacterium NOR5-3] gi|219674496|gb|EED30864.1| flagellar basal-body rod protein FlgG [gamma proteobacterium NOR5-3] Length = 261 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 36/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + ++ST+A+N++N T GF+ + F +++ + + S Sbjct: 11 GLDAQ---QTKMSTIANNLANVGTTGFKRGRAIFEDLIYQNVRQVGSQSSQDTLLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G ++ E G+ T + LD A++G +F + P G TRDG F++ D G Sbjct: 68 IGTGTRVVATEKLFTQGNLTKTDSALDIAIQGRGFFEILLPDGNQAFTRDGSFQINDQGI 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-MGLYS----VDMS 166 +V+++G Y V PI +PQ + G +S Q G +T +GL ++ S Sbjct: 128 VVTSAG-YQV----QPPITVPQDALSVTIANDGTVSVQQPGTAASTQIGLVQLTDFINPS 182 Query: 167 QGFVRREN----SGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 R EN SG S P L+G+ T+ +G++E SN N + E+ MI TQ+ Sbjct: 183 GLQARGENLFLESGAS-GAPQPGNPGLNGLGTLSQGYVESSNVNVVEELVNMIE-TQRAY 240 Query: 222 SITTLIDENEKSMLEAIRN 240 + + ML+ I N Sbjct: 241 EMNSRAISTADQMLQYISN 259 >gi|167568108|ref|ZP_02361024.1| flagellar basal body rod protein FlgF [Burkholderia oklahomensis EO147] gi|167574226|ref|ZP_02367100.1| flagellar basal body rod protein FlgF [Burkholderia oklahomensis C6786] Length = 253 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 19/238 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEY 65 A +LEQ+ S VA+N++NT T GFR F V G+ D ++ S Sbjct: 12 ATQSLEQQ-SVVANNLANTSTTGFRAQLATFRAVPMNFDDGSGNVDPSTTRTYTLSSTPV 70 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG LD A++G W ++ P G TR G V +G LV+A+ PV+ Sbjct: 71 ADFTPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQLVTAN-NLPVV 129 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGIS 178 P+ +P ++ +G+ G +S +A + L V+ ++R + G+ Sbjct: 130 GNGG-PLAVPPNAQL-TIGQDGTVSALMPGDPPTAVAMIDQLKLVNPDPAAMKRGDDGLF 187 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F T LI D+NE++ Sbjct: 188 RTADGNPADADPAVRVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSADQNEQA 245 >gi|78221651|ref|YP_383398.1| hypothetical protein Gmet_0430 [Geobacter metallireducens GS-15] gi|78192906|gb|ABB30673.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 242 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 22/237 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGA-IKNDIDQKI 56 M + L +A +RL +++N++N +T GF+ ++ F + VGA + Sbjct: 1 MNSGIYSALTGNVAAMKRLDVLSNNLANVNTPGFKKDRMTFESMLQTVGAQPRPGGGTDA 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 A + GS TG D A++GD +FA+ + G TR G F++ G LV Sbjct: 61 PVFAETTFFTDYSPGSVKQTGNPFDLAIDGDGFFAVTTADGQRAYTRQGNFRLDSTGRLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 +A G A V + ++ KGE+ G + L VD + + ++ Sbjct: 121 TADG-------AQVAGGVVIAGGKVDINGKGEVLVDGSQVGR--LEVVDFPKPYALQKLG 171 Query: 176 G-----ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G P P P+ +G V +G +E+SN N++ EM Q+I + F + ++ Sbjct: 172 GGLFVPADPQATPNPV---TGEKVMQGAIEESNVNTVQEMVQLIETNRYFEMCSKVV 225 >gi|225620642|ref|YP_002721900.1| flagellar basal body rod protein [Brachyspira hyodysenteriae WA1] gi|225215462|gb|ACN84196.1| flagellar basal body rod protein [Brachyspira hyodysenteriae WA1] Length = 282 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 48/256 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR--TIKVK-FSEVVGAI------------KNDI 52 G + +A + RL VA+N++N D GF+ T+ K F E++ A D+ Sbjct: 8 GASGMMAEQARLDVVANNLANVDKPGFKRDTVSFKAFPEMMAARTEDDGVVIFPLGSTDV 67 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + + +G E + E GS TG +LD AL +FA+E+P G TR+G F + Sbjct: 68 RPYVGRMGTGVEVNEVFTEWEQGSLRETGNQLDIALGDKGFFAIETPNGERYTRNGSFLI 127 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKG----------- 152 D LV+ G Y V+ IQI + FN+ E+G +S Q G Sbjct: 128 DKDHYLVTKHG-YKVMGENGY-IQIKTNN--FNIDEEGRVSINRRYQDGNTFVQFNDNEW 183 Query: 153 ---KVIATMGLYSVDMSQGFVRRENSG--ISPNIPPTPLEDLSGVT---VKRGFLEDSNA 204 +++ T+ + D ++ ++++E + +I GV V FLE SN Sbjct: 184 EDEEILDTLKIVRFD-NERYLKKEGESFWVDTDISGPAFIAEKGVNRPKVLSRFLEMSNV 242 Query: 205 NSMYEMGQMIHLTQKF 220 N + EM +MI + + + Sbjct: 243 NPINEMVRMIEVQRAY 258 >gi|297531534|ref|YP_003672809.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297254786|gb|ADI28232.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 273 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 34/239 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVASGKEY------ 65 AL++RL T++ N++N++TVGF+ + F+E++ + + D+ G Y Sbjct: 14 ALQERLDTISHNIANSNTVGFKRREASFAELLTQQIDRLPNDEAPRQTPEGVRYGNGARL 73 Query: 66 ----LSKEVGSFISTGTELDFALEGD-AWFALE-----SPRGIILTRDGRFKVT---DDG 112 L + G+ + TG LDFAL + WF + I TR G F + + Sbjct: 74 ASTMLITKQGALVETGRRLDFALTAENQWFRVRLADQNGAETIGYTRAGNFSLAPMNGEL 133 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---GKVIA--TMGLYSVDMSQ 167 +L ++ G + VLD + PI +P V G ++ G+V+A +G+ + Q Sbjct: 134 ALTTSDGLF-VLDERNAPIVLPADAHDVQVSPTGTLTATNADGRVVARVNLGVTVIRRPQ 192 Query: 168 GF-VRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 R N PN+P E+L+G ++VK+G LE SN + EM ++ ++ + Sbjct: 193 LLEARGGNVYALPNVPGAA-EELNGNLRGQISVKQGALEQSNVDLGEEMVGLMATSRAY 250 >gi|224170008|ref|XP_002339332.1| predicted protein [Populus trichocarpa] gi|222874887|gb|EEF12018.1| predicted protein [Populus trichocarpa] Length = 251 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 3/174 (1%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ STG LD AL G +F + +P G TR G F++ G LV+A G + + Sbjct: 77 GTLRSTGQNLDVALAGAGYFEVSTPGGPAYTRQGSFRLDAQGRLVTAQGHAVMGRGGEIL 136 Query: 131 IQIPQK--DEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 +Q Q D N+ + + + + +A + + R +S + P L D Sbjct: 137 LQSSQVRIDAQGNIFDGDGVGRTDRPVAQLKVVEAPQPSQLRRLGEGLMSIDGQPGQLAD 196 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + +++GF+E+SN +SM+EM Q++ + F S+ + ++ +AIR + Sbjct: 197 -ADIRIQQGFVENSNVSSMHEMVQLMQTMRHFESMQKVALGYDEMTGQAIRKLG 249 >gi|260768780|ref|ZP_05877714.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260616810|gb|EEX41995.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315180483|gb|ADT87397.1| hypothetical flagellar basal-body rod protein [Vibrio furnissii NCTC 11218] Length = 261 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 38/260 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFV- 59 G+AAQ A +++ +++N++N +TVGF+ +V F ++ G ND++ + V Sbjct: 11 GMAAQDA---KMTAISNNLANVNTVGFKRDRVVFEDLFYSVEKQAGTGTNDLNIHPTGVQ 67 Query: 60 ------ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 +G E + + G+ +T + D A+ GD +F +E P G ++ TR+G+F + DG Sbjct: 68 LGNGVRVAGTEKVFTQ-GNINNTSQQFDLAIVGDGFFQIEGPEGEVLYTRNGQFHLNADG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV--IATMGL 160 ++V+ G + I +P + + E G++S Q G++ + M Sbjct: 127 AIVNTQGY-----LLQPEINVPDNATLVTITEDGQVSAVVSGQVEPEQLGEITLVKFMNP 181 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + E + D +GV +K+G LE SN + EM MI TQ+ Sbjct: 182 SGLTAKGANLLAETEASGEAMELVAGTDGAGV-IKQGALETSNVQVVEEMVDMIS-TQRA 239 Query: 221 NSITTLIDENEKSMLEAIRN 240 ++ + ML+ I N Sbjct: 240 YEMSAKMVSAADQMLQYIAN 259 >gi|260772275|ref|ZP_05881191.1| flagellar basal-body rod protein FlgF [Vibrio metschnikovii CIP 69.14] gi|260611414|gb|EEX36617.1| flagellar basal-body rod protein FlgF [Vibrio metschnikovii CIP 69.14] Length = 249 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 37/225 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q + A+N++N T GFR D++Q S A G+ S+ Sbjct: 17 QAMQLRANNLANVSTTGFRA--------------DLEQARSMQAYGEGLPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 + GS I+TG ELD ++GD W ++ G LTR G ++ +G L++ +G + V Sbjct: 63 GHRFDQGSVITTGRELDITIQGDGWISVLDKTGNEGLTRSGNLRIDQNGLLLNGNG-HLV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI-- 181 L PI +P +G G IS + + + VD + V+ +N + +I Sbjct: 122 LGELGAPITLPIPLNKVEIGNDGTISVRPQGAPADAMEIVDRIK-LVKPDNRSLFKDING 180 Query: 182 ------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P + V V G LE SN N++ EM +I L ++F Sbjct: 181 LFRAKDPNAEYVADATVKVLTGALEGSNVNAVGEMTNLIDLQRQF 225 >gi|239907793|ref|YP_002954534.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] gi|239797659|dbj|BAH76648.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] Length = 261 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 24/259 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M+ S + L+ E RL+ A+N++N +T G++ +V F + + DI Sbjct: 1 MEMSMYSAVFGALSTETRLNISANNLANVNTTGYKRDRVSFEDTFYRYAHDYHMDPRGDI 60 Query: 53 DQK-----ISFVASGKEYLSK---EVGSFISTGTELDFALEGDAWFALESPRG-IILTRD 103 QK +A + + + G+ +TG LD A++G +F + + +G TR+ Sbjct: 61 RQKQLLPRADLIAKPRLAMQQIDFAQGALTATGNPLDLAIQGPGFFKVSAGQGNSYYTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F + +G LV+ PVL PIQ+P+ +VG G + G + + + +V Sbjct: 121 GAFHRSAEGMLVNDQ-DMPVLGGGG-PIQLPEGR--ISVGGDGAVYVDGAQVGQVDVVTV 176 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDL--SGVT-VKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ + P T E + +G T V +GFLE N + EM MI + F Sbjct: 177 QNPDALMKYGANLYMPQTGATVQEGVLRAGTTEVAQGFLEKPNVEVVEEMVSMIETQRTF 236 Query: 221 NSITTLIDENEKSMLEAIR 239 + ++ + + +AIR Sbjct: 237 EAYQKVMSSSNELDTKAIR 255 >gi|221199740|ref|ZP_03572783.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD2M] gi|221208655|ref|ZP_03581655.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD2] gi|221171466|gb|EEE03913.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD2] gi|221179979|gb|EEE12383.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD2M] Length = 252 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 22/239 (9%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISFVASGKEYL 66 A +L+Q+ + VA+N++N T GFR + V + D + ++V + Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSAIDPNTTRTYVLASTPGA 70 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G TG LD A++G W +++ P G TR G V +G LV+AS PV+ Sbjct: 71 DFAPGPITRTGNPLDVAVQGPGWLSVQLPDGSEAYTRAGNLHVDQNGQLVNAS-NLPVVG 129 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRRENSGI 177 PI +P E+ +G+ G +S ++ M L + D + + R N G+ Sbjct: 130 NGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAA--LVRGNDGL 185 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F + LI D+NE+S Sbjct: 186 FRTTDGNPADADPNVAVVPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNEQS 244 >gi|307731362|ref|YP_003908586.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1003] gi|307585897|gb|ADN59295.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1003] Length = 252 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 17/232 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSK 68 ALEQ+ + VA+N++N T GFR F V G+ ND + +FV S Sbjct: 15 ALEQQ-AIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR-TFVLSSTPGADY 72 Query: 69 EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A+EG W A+++ G TR G + +G LV+A+ + VL Sbjct: 73 TPGPIQQTGNPLDVAIEGPGWLAVQTADGGEAYTRAGNLHIDQNGQLVNATNQV-VLGNG 131 Query: 128 SVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 P+ +P +I +G G ++ V+ L V+ + R + G+ Sbjct: 132 G-PMAVPPGAQI-TIGRDGTVTALTPGDPPTAVVTIDQLKLVNPDPQTLTRGDDGLFRTA 189 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P E V V LE SN N + M MI ++F T L++ +K+ Sbjct: 190 DGNPAEADPTVAVAPASLEGSNVNPVSAMVAMITNARQFQMQTKLLESADKN 241 >gi|240144761|ref|ZP_04743362.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|257203282|gb|EEV01567.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|291534609|emb|CBL07721.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1] gi|291540626|emb|CBL13737.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4] Length = 264 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 38/255 (14%) Query: 16 EQRLSTVADNMSNTDTVGFR-------------TIKVKFSEVVGAIKNDIDQKISF---- 58 + RL +++N++N DT G++ IK+K + G + QK+ Sbjct: 16 QNRLDILSNNLANADTNGYKKEGATNQTFADELAIKIKDTSSYG-----MPQKLGTMSMG 70 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-----ESPRGIILTRDGRFKVTDDGS 113 V G+ Y G+F T DFAL+GD +FA+ + +RDG F V G Sbjct: 71 VHIGETYTDYSQGNFRVTDNATDFALDGDGFFAIAYTDKAGNTSVKYSRDGAFVVNTAGY 130 Query: 114 LVSASGKYPVLDM-------ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 LV+ G Y VL+ A IQ+ I V EKG I Q + + T+G+ VD++ Sbjct: 131 LVTKDGDY-VLNQNGAMNADAGARIQVDPNVPI-TVDEKGNIFQNNQQVGTIGV--VDIA 186 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + ++ S V +G +E SN N + EM MI +++ F + + Sbjct: 187 DYNYLAKYGENMYDLVNGGARQASTAKVTQGCIESSNINVVSEMVNMITISRAFQAGQKV 246 Query: 227 IDENEKSMLEAIRNI 241 I+ ++++ +A+ + Sbjct: 247 INAVDETLDKAVNQV 261 >gi|221215572|ref|ZP_03588535.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD1] gi|221164560|gb|EED97043.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD1] Length = 252 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 22/239 (9%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISFVASGKEYL 66 A +L+Q+ + VA+N++N T GFR + V + D + ++V + Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSAIDPNTTRTYVLASTPGA 70 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G TG LD A++G W +++ P G TR G V +G LV+AS PV+ Sbjct: 71 DFAPGPITRTGNPLDVAVQGPGWLSVQLPDGSEAYTRAGNLHVDQNGQLVNAS-NLPVVG 129 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRRENSGI 177 PI +P E+ +G+ G +S ++ M L + D + + R N G+ Sbjct: 130 NGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT--LVRGNDGL 185 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F + LI D+NE+S Sbjct: 186 FRTTDGNPADADPNVAVVPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNEQS 244 >gi|218461961|ref|ZP_03502052.1| flagellar hook protein FlgE [Rhizobium etli Kim 5] Length = 316 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 22/117 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTVADN++N +T G++ + FS +V G ++ + Q +S Sbjct: 16 AQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVS------ 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ GD +F ++ P G +LTR G F+ D+G+LV+A+G Sbjct: 70 -----DQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAAG 121 >gi|153831580|ref|ZP_01984247.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156976143|ref|YP_001447049.1| flagellar basal body rod protein [Vibrio harveyi ATCC BAA-1116] gi|269960118|ref|ZP_06174494.1| Putative flagellar basal-body rod protein flgG [Vibrio harveyi 1DA3] gi|148872090|gb|EDL70907.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156527737|gb|ABU72822.1| hypothetical protein VIBHAR_04914 [Vibrio harveyi ATCC BAA-1116] gi|269835089|gb|EEZ89172.1| Putative flagellar basal-body rod protein flgG [Vibrio harveyi 1DA3] Length = 261 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ N++ + Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNELPSGVQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V G+ +T ELD A+ G +F +E+ G I+ TR+G+F + +G Sbjct: 68 LGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATM 158 +V++ G P+ IQIP F+VG G ++ Q G++ I Sbjct: 128 MVNSQG-LPL----EPQIQIPDNAISFSVGVDGTVTTTSADDPTPQQLGQITLAKFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL +V G + RE P ED +G ++K+G LE SN + EM MI + Sbjct: 183 GLEAVG---GNLFRETEASGPADELIAGEDGAG-SIKQGALEGSNVQVVEEMVDMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|187925760|ref|YP_001897402.1| flagellar basal body rod protein FlgF [Burkholderia phytofirmans PsJN] gi|187716954|gb|ACD18178.1| flagellar basal-body rod protein FlgF [Burkholderia phytofirmans PsJN] Length = 252 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 17/232 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSK 68 ALEQ+ + VA+N++N T GFR F V G+ ND + +FV S Sbjct: 15 ALEQQ-AIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR-TFVLSSTPGADY 72 Query: 69 EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A++G W A+++ G TR G V ++G LV+A+ + VL Sbjct: 73 TPGPIQQTGNPLDVAIQGPGWLAVQTADGGEAYTRAGNLHVDENGQLVNATNQV-VLGNG 131 Query: 128 SVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 P+ +P EI +G+ G +S V+ L V+ + R + G+ Sbjct: 132 G-PVSVPPGAEI-TIGKDGTVSALTPGDPPTAVVTVDQLKLVNPDPQTMTRGDDGLFRTA 189 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + VT+ LE SN N + M MI ++F T L++ +K+ Sbjct: 190 DGNAADADPAVTLAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLESADKN 241 >gi|32477363|ref|NP_870357.1| FlgF [Rhodopirellula baltica SH 1] gi|32447914|emb|CAD77434.1| FlgF [Rhodopirellula baltica SH 1] gi|327537336|gb|EGF24069.1| Flagellar basal-body rod FlgF [Rhodopirellula baltica WH47] Length = 273 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 20/163 (12%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRT----IKVKFSEVV--GAIK------NDIDQKIS 57 A A RL ++ N++N DT GF+ ++ +FSE++ G + +DI ++ Sbjct: 33 AGAQAQNHRLQQISHNLANVDTPGFKPSQTILQARFSELIEEGMVPPGLGGADDIGGGVT 92 Query: 58 FVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 ++ VG+ +TG E DFAL + ++F L+ +LTR G F G++V+ Sbjct: 93 IQPEQTQF---GVGAIRTTGRETDFALHDKKSFFVLQRGDEQLLTRAGDFMFDSTGTMVN 149 Query: 117 ASGKYPVLDMASVPIQI-PQKDEIFNVGEKGEISQKGKVIATM 158 + G PVL PIQI P++ F VG +G I+Q G+ M Sbjct: 150 SGGD-PVLGKGGRPIQIDPRRP--FTVGSEGTITQAGETQQLM 189 >gi|206558969|ref|YP_002229729.1| flagellar basal body rod protein FlgF [Burkholderia cenocepacia J2315] gi|198035006|emb|CAR50878.1| flagellar basal-body rod protein FlgF (putative proximal rod protein) [Burkholderia cenocepacia J2315] Length = 252 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 22/239 (9%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKISFVASGKEYL 66 A +L+Q+ + VA+N++N T GFR + V K D ++V S Sbjct: 12 ASQSLDQQ-AVVANNLANASTTGFRAQLATYRAVPMNFGDGSKIDPTTTRTYVLSSTPGA 70 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G TG LD A++G W ++++ G TR G V ++G LV+AS PV+ Sbjct: 71 DYAPGPITRTGNPLDVAVQGPGWLSVQTADGSEAYTRAGNLHVDENGQLVNAS-NLPVIG 129 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRRENSGI 177 PI +P E+ +G+ G +S ++ M L + D + + R N G+ Sbjct: 130 NGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT--LTRGNDGL 185 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F + LI D+NE++ Sbjct: 186 FRTADGNPADVDPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNEQT 244 >gi|310644367|ref|YP_003949126.1| flagellar basal body rod protein [Paenibacillus polymyxa SC2] gi|309249318|gb|ADO58885.1| Flagellar basal body rod protein [Paenibacillus polymyxa SC2] Length = 294 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 127/291 (43%), Gaps = 66/291 (22%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV----GAIKNDIDQKISFVASG 62 A + ++R TV N++N +T G++ +++ F E++ G ++ D+ + + +G Sbjct: 10 AGMMTQQRRHDTVTQNIANMNTTGYKQENSVQRSFPEMLISMTGGNPDNPDRTVGKLNTG 69 Query: 63 ---KEYLSKEV-GSFISTGTELDFALEGD------------------------------- 87 +E LS + G+ +G DFAL+ + Sbjct: 70 VFAEESLSPYIQGALKDSGQTTDFALQSNINVNDPATGRPMAFDQAGKFINANGEVTYRP 129 Query: 88 -AWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 A+F + G + TRDG F+V G+L+S++G VLD PIQ+ V E+ Sbjct: 130 EAFFTVRDNNGNVRYTRDGHFQVNGTGALLSSTGS-AVLDTNGNPIQLTGSVSALKVNER 188 Query: 146 GEI--SQKGKVIAT-MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG----------- 191 G++ SQ +++ T +G+ +D VR N L D G Sbjct: 189 GQLVDSQSNQLLGTTLGISVIDRPYQLVREGNGNFR-------LNDTDGATARMMTANDT 241 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V+V++G+LE SN ++ M M+ + + + +I +KS+ +A+ + Sbjct: 242 VSVRQGYLEVSNVDAAQSMVDMMAALRAYEANQKVIQFYDKSLDKAVNEVG 292 >gi|308273543|emb|CBX30145.1| hypothetical protein N47_D29540 [uncultured Desulfobacterium sp.] Length = 226 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 28/216 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 L + R T+++N++N +T F+ V F DQ +S S + S G Sbjct: 13 LIQQLRFDTLSNNLANVNTNAFKQDIVSF-----------DQNLSLNRSSIDLSS---GP 58 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 + TG D ALEG +F +++ GI +RDG F + DG LV+ +G VL PI Sbjct: 59 IVFTGNAFDVALEGPGFFKIQTASGIKYSRDGAFSLNRDGMLVNRNGD-KVLGKNG-PIT 116 Query: 133 IPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 + + + +G G+I++ G +A + + +G G + NI Sbjct: 117 LTGNNIV--IGSDGQITEDGNPGDKIFVADIKDSKLLKKEGMNYYVYDGEAKNITSAE-- 172 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 V++K+ ++E SN N EM +M+ + F SI Sbjct: 173 ---KVSIKQSYIEKSNVNVTEEMIRMVETLRTFESI 205 >gi|152980353|ref|YP_001353112.1| FlgF flagellar basal body rod protein [Janthinobacterium sp. Marseille] gi|151280430|gb|ABR88840.1| FlgF flagellar basal body rod protein [Janthinobacterium sp. Marseille] Length = 246 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 94/217 (43%), Gaps = 13/217 (5%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ +EQ+ ST A N++N T GFR F V + N + + +FV Sbjct: 12 AKQIMEQQ-STTAHNLANVSTTGFRAQMDTF-RAVPVVSNGLPTR-TFVVDSTIGTDFRA 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G TG LD A++G W A+E G TR G K+ ++G L + G + D Sbjct: 69 GPIQQTGRTLDLAVQGPGWLAVERADGTEGYTRSGSLKINENGVLQTEGGLNVLADGG-- 126 Query: 130 PIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 PI IP +I + + G IS G I L V+ G + R + GI Sbjct: 127 PITIPPNVKI-SFAKDGTISSVDSGNVPGATIEIARLKLVNPDVGNLERSSDGIFITKDR 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P + + V V G +E SN N + M MI L ++F Sbjct: 186 LPADVDANVGVISGAIEGSNVNVVDAMVNMISLARQF 222 >gi|148554187|ref|YP_001261769.1| flagellar basal body rod protein FlgG [Sphingomonas wittichii RW1] gi|148499377|gb|ABQ67631.1| flagellar basal-body rod protein FlgG [Sphingomonas wittichii RW1] Length = 262 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 117/258 (45%), Gaps = 38/258 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND-------ID 53 GL AQ R+ +A+N++N +T GF+ + F + GA +D + Sbjct: 12 GLDAQ---NMRMQVIANNLANVNTTGFKRDRASFETLAYQAMTAPGAASSDSTKFATGTN 68 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 +G + + G+ TG LD A++GD +F + P G TRDG F +DDG Sbjct: 69 LGTGVQINGTAKIQTQ-GALQETGNPLDMAIQGDGYFQVLLPDGRTGYTRDGNFNRSDDG 127 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVDMSQ--- 167 ++V+A G + IQIP+ + G +S Q G+ +T L +++++ Sbjct: 128 TIVTADGYH-----LQPQIQIPENTTNLTIAADGTVSATQAGETTSTE-LGKIELARFSN 181 Query: 168 -GFVRRENSGISPNIPPT--PLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ E + I P + P G+ T+++ LE SN N + E+ MI + + Sbjct: 182 PAGLQAEGNNILTETPASGQPQTGPGGIDGRGTIQQSSLESSNVNIVEELVDMIETQRAY 241 Query: 221 NSITTLIDENEKSMLEAI 238 + +I ++ ML+ + Sbjct: 242 EVNSKMISSTDQ-MLQYV 258 >gi|110632656|ref|YP_672864.1| flagellar basal body rod protein FlgG [Mesorhizobium sp. BNC1] gi|110283640|gb|ABG61699.1| flagellar basal-body rod protein FlgG [Chelativorans sp. BNC1] Length = 262 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/260 (23%), Positives = 122/260 (46%), Gaps = 35/260 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------KNDIDQKI 56 G++AQ + L +A+N++N +T GF+ + +FS+++ + +N + + Sbjct: 10 GMSAQ---QTNLEVIANNIANINTTGFKRARAEFSDLLYQVERLQGVPERANQNIVPEGA 66 Query: 57 SFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + K + V GS +TG +LD AL G WF +E G + +R G F G Sbjct: 67 NIGLGVKTAAVRNVHVQGSLTNTGNKLDMALVGKGWFQIEGADGEPLYSRAGAFNTNATG 126 Query: 113 SLVSASGKYPVLDMASVP-----IQIPQKDEIF-NVGEKGEISQKGKVIATMGLYSVDMS 166 LV+ G +PV ++P + + + ++F + + ++ + G++ T+ +S + Sbjct: 127 QLVTVDG-FPVTPAITIPADAVEVIVNKSGQVFARIDGQADLQELGQL--TLANFSNEAG 183 Query: 167 QGFVR----RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF-- 220 + RE P P D TV++G+LE SN + + E+ ++I + + Sbjct: 184 LAPIGNNLFRETPASGPATIGVP-GDPGFATVEQGYLEASNVDPVKEITELISAQRAYEM 242 Query: 221 -NSITTLIDENEKSMLEAIR 239 + + T DE ++ +A+R Sbjct: 243 NSKVITAADEMAATVTQAMR 262 >gi|161526185|ref|YP_001581197.1| flagellar basal body rod protein FlgF [Burkholderia multivorans ATCC 17616] gi|189349099|ref|YP_001944727.1| flagellar basal body rod protein FlgF [Burkholderia multivorans ATCC 17616] gi|160343614|gb|ABX16700.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans ATCC 17616] gi|189333121|dbj|BAG42191.1| flagellar basal-body rod protein [Burkholderia multivorans ATCC 17616] Length = 252 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 22/239 (9%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISFVASGKEYL 66 A +L+Q+ + VA+N++N T GFR + V + D + ++V + Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSAVDPNTTRTYVLASTPGA 70 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G TG LD A++G W +++ P G TR G V +G LV+AS PV+ Sbjct: 71 DFAPGPITRTGNPLDVAVQGPGWLSVQLPDGSEAYTRAGNLHVDQNGQLVNAS-NLPVVG 129 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRRENSGI 177 PI +P E+ +G+ G +S ++ M L + D + + R N G+ Sbjct: 130 NGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT--LVRGNDGL 185 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F + LI D+NE+S Sbjct: 186 FRTTDGNPADADPNVAVVPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNEQS 244 >gi|242309753|ref|ZP_04808908.1| flagellar basal-body rod protein flgg [Helicobacter pullorum MIT 98-5489] gi|239523754|gb|EEQ63620.1| flagellar basal-body rod protein flgg [Helicobacter pullorum MIT 98-5489] Length = 277 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 121/284 (42%), Gaps = 50/284 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ F + + RL +A+N++N +T GF+ V V+G +Q F+ Sbjct: 1 MQGGFYSSVGGMVTQINRLDVIANNIANANTTGFKRDDV----VIGDFMRLYEQHKEFLP 56 Query: 61 SG---------------------KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGI 98 +E+ + G + T DFAL +A+F +E+P GI Sbjct: 57 IEDQTKDAAKFYNRSLNRVPQIVEEFTDRSAGGVVQTENTFDFALSRENAYFMIETPEGI 116 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 +RDG F + ++G LV+ G Y VL I+ PQ + + G + E+ G I Sbjct: 117 RFSRDGSFVLNEEGRLVNKEG-YAVLPREY--IESPQYIDFVD-GFQVEVDSDGN-IYNR 171 Query: 159 GLYSVDMSQGF-------VRREN----SGISPNIPPTPLEDLSGV-------TVKRGFLE 200 L + ++ + V EN + N+ P E ++ + V++GFLE Sbjct: 172 SLTNEELDEALLGGNIAVVSFENPKFLQKVGDNLYKYPEERMNEMEVLERSGAVRQGFLE 231 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 SN N +YEM +I + + + ++ + + EAI +A+ Sbjct: 232 KSNINVVYEMTGLIETNRLVEAYSKVLKTHMDDLNTEAITRLAA 275 >gi|313497764|gb|ADR59130.1| FlgG [Pseudomonas putida BIRD-1] Length = 261 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+ +++N++N T GF+ + +F++++ IK Sbjct: 11 GLSAQ---DTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K +++ GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 VGTGVRIVGTQKSFVA---GSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+A+G L+ A I +P + F VG+ G +S Q I Sbjct: 125 DGQIVTANGY--ALEPA---IVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ F+ SG +P + TP + G T+++ LE+SN +++ E+ MI Sbjct: 180 NPAGLQAIG-DNLFLETAASG-APQV-GTPGLNGFGTTLQQ-TLENSNVSTVEELVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|167034941|ref|YP_001670172.1| flagellar basal body rod protein FlgG [Pseudomonas putida GB-1] gi|166861429|gb|ABY99836.1| flagellar basal-body rod protein FlgG [Pseudomonas putida GB-1] Length = 261 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+ +++N++N T GF+ + +F++++ IK Sbjct: 11 GLSAQ---DTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K +++ GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 VGTGVRIVGTQKSFVA---GSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+A+G L+ A V +P + F VG+ G +S Q I Sbjct: 125 DGQIVTANGY--ALEPAVV---VPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ F+ SG +P + L T ++ LE+SN +++ E+ MI Sbjct: 180 NPAGLQAIG-DNLFLETAASG-APQVGTPGLNGFG--TTQQQTLENSNVSTVEELVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|296126376|ref|YP_003633628.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] gi|296018192|gb|ADG71429.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] Length = 282 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 48/256 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR--TIKVK-FSEVVGAI------------KNDI 52 G + +A + RL VA+N++N D GF+ T+ K F E++ A D+ Sbjct: 8 GASGMMAEQARLDVVANNLANVDKPGFKRDTVSFKSFPEMMAARTEDDGVVIFPLGSTDV 67 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + + +G E + E GS TG +LD AL +FA+E+P G TR+G F + Sbjct: 68 RPYVGRMGTGVEVNEVFTEWEQGSLRETGNQLDIALGDKGFFAVETPHGERYTRNGSFLI 127 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKG----------- 152 D LV+ G Y V+ IQI K FN+ E+G +S Q G Sbjct: 128 DKDHYLVTKHG-YKVMGENGY-IQI--KTNNFNIDEEGRVSINRRYQDGNTFVQFNDNEW 183 Query: 153 ---KVIATMGLYSVDMSQGFVRRENSG--ISPNIPPTPLEDLSGV---TVKRGFLEDSNA 204 +++ T+ + D ++ ++++E + +I GV V FLE SN Sbjct: 184 EDEEILDTLKIVRFD-NERYLKKEGESFWVDTDISGPAYIAQKGVDRPKVLSRFLEMSNV 242 Query: 205 NSMYEMGQMIHLTQKF 220 N + EM +MI + + + Sbjct: 243 NPVNEMVRMIEVQRAY 258 >gi|327478811|gb|AEA82121.1| flagellar basal-body rod protein FlgG [Pseudomonas stutzeri DSM 4166] Length = 261 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 37/248 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GLAAQ ++ ++TVA+N++N +T GF++ + F ++ GA ++I+ S + Sbjct: 11 GLAAQ---DKAMATVANNLANVNTNGFKSDRAVFEDLFYVIEKQPGAQADEINTVPSGIQ 67 Query: 60 ------ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 +G + + E GS +TG +D A+ G +F +E+P G I T +G+F++ +G Sbjct: 68 LGSGVRVAGTQKVFTE-GSIQTTGQPMDLAIVGRGFFQVEAPNGDIFYTENGQFQLNAEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI----------SQKGKV--IATMGL 160 +V+A G P+ + I++P+ F VG G + S+ G++ + Sbjct: 127 MMVNAQG-LPL----NPAIEVPEGSTGFTVGSDGIVTAVLAGDTLPSELGQITLVNFTNP 181 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ G + RE + P E+ G +K+G LE SN + M MI + + + Sbjct: 182 GGLEALGGNLYRETVASGEPVEGVPGEEGLG-QLKQGVLEGSNVQVVEAMVAMIAIQRAY 240 Query: 221 NSITTLID 228 + ++D Sbjct: 241 EANAKVLD 248 >gi|161621182|ref|YP_001595068.1| flagellar hook protein FlgE [Brucella canis ATCC 23365] gi|254702383|ref|ZP_05164211.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] gi|260568714|ref|ZP_05839183.1| flagellar hook protein FlgE [Brucella suis bv. 4 str. 40] gi|261752946|ref|ZP_05996655.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] gi|161337993|gb|ABX64297.1| flagellar basal body FlaE domain protein [Brucella canis ATCC 23365] gi|260155379|gb|EEW90460.1| flagellar hook protein FlgE [Brucella suis bv. 4 str. 40] gi|261742699|gb|EEY30625.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] Length = 396 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVHYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|327480022|gb|AEA83332.1| flagellar basal body rod protein FlgG [Pseudomonas stutzeri DSM 4166] Length = 261 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---DQKISFVASGKE 64 GL+AQ + L+T+++N++N T GF+ + +F +++ I+ + S + SG + Sbjct: 11 GLSAQ---DMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSSQDSELPSGLQ 67 Query: 65 YLSK----------EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + GS +T LD A+ G +F + P G + TRDG F ++ DG Sbjct: 68 LGTGVRITGTQKIFTTGSLQTTEQPLDMAINGRGFFQVLLPDGTVSYTRDGSFHLSSDGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 LV+++G L+ A I +P + + F VGE G +S Q I Sbjct: 128 LVTSNGY--ALEPA---IVVPPETQTFTVGEDGTVSVTTVGNPQPQIIGNIQTADFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ S F+ SG +P + L L TV + LE+SN + + E+ MI + Sbjct: 183 GLQAMG-SNLFLETAASG-APQVSTPGLNGLG--TVLQNTLENSNVSVVEELVNMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|260431748|ref|ZP_05785719.1| flagellar basal-body rod protein FlgG [Silicibacter lacuscaerulensis ITI-1157] gi|260415576|gb|EEX08835.1| flagellar basal-body rod protein FlgG [Silicibacter lacuscaerulensis ITI-1157] Length = 261 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 44/244 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI--SF 58 G++AQ + R+ T+++N++N +T G+ + +F+++ G + N D + + Sbjct: 10 GMSAQ---QMRVETISNNLANMNTTGYNARRAEFADLHYQQMARAGTV-NASDGTVLPTG 65 Query: 59 VASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + G V G+ +TG++LD A+EG + + P G TRDG K + + Sbjct: 66 IQLGLGVRPAAVTVQLAQGALSATGSDLDIAIEGRGYLEVTLPNGQSAYTRDGSLKRSAE 125 Query: 112 GSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVD 164 G +V++ G +PV VP I IP ++ GE+ + +G+++ L S Sbjct: 126 GLIVTSDG-FPV-----VPEITIPDDARSISINAAGEVYAYFDDTAEGQLLGEFTLASFS 179 Query: 165 MSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 ++G F E SG +P I TP ED G T+++G+LEDS+ +++ E+ ++I Sbjct: 180 NAKGLEAIGSNLFKETEASG-AP-IVGTPGEDGLG-TLRQGYLEDSSVDAVREVTELIEA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRGY 240 >gi|222053732|ref|YP_002536094.1| flagellar basal-body rod protein FlgG [Geobacter sp. FRC-32] gi|221563021|gb|ACM18993.1| flagellar basal-body rod protein FlgG [Geobacter sp. FRC-32] Length = 262 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + + VA+N++N +T GF+ + F +++ GA + Q + + Sbjct: 11 GMQAQ---QLNIDVVANNLANVNTTGFKKSRADFHDLMYQSMKTSGAPSTNATQIPTGIQ 67 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 G V G+ TG ELD A+EGD +F ++ P G TR G FK G Sbjct: 68 VGLGSKPAAVTKIFTTGNVTQTGNELDVAIEGDGFFQIQMPDGSTEYTRAGAFKKDSQGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGLYSVD--- 164 +V++ G YP+L + IP +G G +S Q G+ + T+ L + Sbjct: 128 VVTSEG-YPLLP----EVVIPNNTTSITIGNDGTVSVIQSGQTSPTSVGTIQLATFSNPA 182 Query: 165 --MSQG---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQ 218 SQG F E+SG + T +G+ T+ +G+LE SN + EM MI + Q Sbjct: 183 GLSSQGHNLFKETESSGAA----TTGTSGQNGIGTLSQGYLEMSNVSVAEEMVNMI-VGQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + + ML+ N+ Sbjct: 238 RAYEINSKAVQAADEMLQTANNL 260 >gi|163856436|ref|YP_001630734.1| flagellar basal body rod protein FlgF [Bordetella petrii DSM 12804] gi|163260164|emb|CAP42466.1| flagellar basal-body rod protein FlgF [Bordetella petrii] Length = 249 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 31/244 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKE 64 +G AA+ A Q + + +NM+N T GFR + V + ++S V + G Sbjct: 9 MGGAARAAEHQ--AVLNNNMANVSTPGFREQLAMYRSVPVLDGTSLPTRVSTVTATPGSN 66 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 + ++G+ +TG LD AL G W A+++P+G TR G +V +G L +A G+ PVL Sbjct: 67 F---QLGNMETTGRALDVALAGPGWLAIQTPQGEAYTRAGDLQVGVNGLLQTAQGQ-PVL 122 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKG--------------KVIATMGLYSVDMSQGFV 170 + I +P+ + G I+ G K++ V G Sbjct: 123 SDQNGVIDVPEL-ATLTIASDGTITALGAGDPPNNILNLGRLKMVNPPETAMVRGDDGVF 181 Query: 171 RRENSGISPNIPPTP-LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 R G P +P P L +SGV LE SNA+ + M MI ++F +I E Sbjct: 182 RMAQGGGQP-LPADPALRLMSGV------LESSNASPIKAMVGMIDNARRFEMQMQVISE 234 Query: 230 NEKS 233 +K+ Sbjct: 235 ADKN 238 >gi|239817164|ref|YP_002946074.1| flagellar basal body rod protein FlgF [Variovorax paradoxus S110] gi|239803741|gb|ACS20808.1| flagellar basal-body rod protein FlgF [Variovorax paradoxus S110] Length = 248 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 100/228 (43%), Gaps = 33/228 (14%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLSK 68 A+ A+EQ+ S VA+NM+N T GFR F V + + VA+ G ++ Sbjct: 12 AKQAMEQQAS-VANNMANASTPGFRAQINSFRAVPVTDGAEATTRAYVVATTPGADF--- 67 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A+ GD W A+++P G TR G +V +G L + G PV A Sbjct: 68 SHGPLTETGRALDVAIHGDGWLAVQTPDGGEAYTRVGNLQVNAEGQLTT-MGSLPVAGDA 126 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV-----------DMSQG----FVRR 172 + +P + + G ++ +G +G+ V D+ +G F R Sbjct: 127 GA-LTVPPGSTVA-IAANGLVTARGAGDPAIGIAEVGRLKLVNPPVADLVRGADGLFRMR 184 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 E G++P P + VTV G +E SN N + M MI + F Sbjct: 185 E--GLAPAEPD------AAVTVTTGAVEGSNVNGVEAMVAMIANARSF 224 >gi|291280521|ref|YP_003497356.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] gi|290755223|dbj|BAI81600.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] Length = 254 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 19/232 (8%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKISF-------V 59 + LA ++L +++N++N +T ++ F + + K DI + + V Sbjct: 10 SGMLAQNRKLEIISNNLANINTTSYKREDAIFRDYLYHDKRTPQDIIKASEYNKTINNTV 69 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + Y G+ TG D ALE + +FA+E+P GI TRDG F + D LV+ Sbjct: 70 SLDSIYTDFSPGNLRQTGNRFDLALENKNTFFAVETPFGIRFTRDGHFTLDKDRRLVNQD 129 Query: 119 GKYPVLDM---ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 G +PVL + I +P D + E GEI G ++ + + VD +++ Sbjct: 130 G-FPVLSRNFENNEGIILP--DGEVTITENGEIMVDGVILDQLFIAEVD-DPSKMQKMGR 185 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + I P E + V++G+LE SN N + EM MI + F + +I Sbjct: 186 NLYAAIGFMPDES-TNPGVRQGYLEGSNVNPVKEMVSMIESMRGFETYQKVI 236 >gi|260762610|ref|ZP_05874944.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] gi|260673033|gb|EEX59854.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] Length = 243 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 45/232 (19%) Query: 22 VADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKI----SFVASGKEYLSKE-- 69 +A+N++N +T GF+ + +F SE + N +Q I + V G + + Sbjct: 2 IANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALVGLGVQTAAVRNL 61 Query: 70 --VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDM 126 GSF TG D AL G WF ++SP G + TR G F DG LV+ G PV Sbjct: 62 HIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQLVTLDGN-PVEPA 120 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ----------------G 168 ++P P E+ I+ G+V A + + VD+ Q G Sbjct: 121 ITIP---PDAIEV-------TITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGLEPLGG 170 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + RE + P + G ++K+G+LE SN + + E+ +I + + Sbjct: 171 NLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITAQRAY 221 >gi|222147589|ref|YP_002548546.1| flagellar hook protein FlgE [Agrobacterium vitis S4] gi|221734577|gb|ACM35540.1| flagellar hook protein [Agrobacterium vitis S4] Length = 418 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S N ++ A +LSTV DN++N+DT G++ + FS +V V + Sbjct: 6 SMNTAVSGLQAQASKLSTVGDNVANSDTTGYKRVSTAFSSLVVGSSGSGTYNSGGVQTTT 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 E GS+ S+ +E D A++GD +F ++ G + LTR G FK D+G +V+++G Y Sbjct: 66 VNSISEEGSYQSSTSETDLAIKGDGYFVVQDEAGSVFLTRAGDFKADDNGYMVNSAG-YT 124 Query: 123 VL 124 +L Sbjct: 125 LL 126 >gi|241203124|ref|YP_002974220.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857014|gb|ACS54681.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 432 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 22/117 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTVADN++N +T G++ + FS +V G ++ + Q +S Sbjct: 16 AQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVS------ 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ GD +F ++ P G +LTR G F D+G+LV+A+G Sbjct: 70 -----DQGDISYTTSSTDLAISGDGFFIVQGPDGTPVLTRAGDFTKDDEGNLVNAAG 121 >gi|150020364|ref|YP_001305718.1| flagellar basal-body rod protein FlgG [Thermosipho melanesiensis BI429] gi|149792885|gb|ABR30333.1| flagellar basal-body rod protein FlgG [Thermosipho melanesiensis BI429] Length = 261 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 31/232 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISFVASGKE 64 A + +L T+++N++N DT G++ +K +F +++ +N I +V G + Sbjct: 14 AQQFKLDTLSNNIANVDTAGYKKVKTEFQDLLYDYSKNAGAATAQNSIHPTGLYVGHGTK 73 Query: 65 YLSKEV-----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 LS G+ TG LD A+ GD +F ++ G I TRDG+FK+ +G +++++ Sbjct: 74 -LSATTRIFTQGNLERTGNSLDIAISGDGFFQIQLQDGRIAYTRDGQFKIDGNGRIITSN 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGF-VRR 172 G ++ S I +PQ N+ G ++ Q G + + T+ L G Sbjct: 133 G-----NLLSPNIVVPQNAVAINISPDGIVTAELQDGTLQNLGTITLVRFINPSGLKAIG 187 Query: 173 ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +N + P+E +G ++ +G++E SN + + EM MI + + Sbjct: 188 DNLYLETPASGAPVEGTAGQDGFGSILQGYVEKSNVDIVKEMVDMISAMRAY 239 >gi|56421866|ref|YP_149184.1| flagellar hook-basal body protein [Geobacillus kaustophilus HTA426] gi|56381708|dbj|BAD77616.1| flagellar hook-basal body protein [Geobacillus kaustophilus HTA426] Length = 273 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 34/259 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVASGKEY------ 65 AL+QRL T++ N++N++TVGF+ + F+E++ + + D+ G Y Sbjct: 14 ALQQRLDTISHNIANSNTVGFKRREASFAELLTQQIDRLPNDEAPRQTPEGVRYGNGARL 73 Query: 66 ----LSKEVGSFISTGTELDFAL-EGDAWFALE-----SPRGIILTRDGRFKVTD-DGSL 114 L + G+ + TG LDFAL + + WF + I TR G F + +G L Sbjct: 74 ASTMLITKQGALVETGRRLDFALTDENQWFRVRLADQNGAETIGYTRAGNFSLAPMNGQL 133 Query: 115 -VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---GKVIA--TMGLYSVDMSQG 168 ++ S VLD + PI +P + G ++ G+V+A +G+ + Q Sbjct: 134 ALTTSDGLFVLDERNAPIVLPADAHDVQMSPTGTLTATNTDGRVVARVNLGVTMIRRPQL 193 Query: 169 F-VRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIHLTQKF-- 220 R N PN+P E+L+G ++VK+G LE +N + EM ++ ++ + Sbjct: 194 LEARGGNVYALPNVPGAA-EELNGSLRGQISVKQGALEQANVDLGEEMVGLMATSRAYQL 252 Query: 221 NSITTLIDENEKSMLEAIR 239 N+ I E ++ +R Sbjct: 253 NARAVSISEQMLGLINGMR 271 >gi|308071138|ref|YP_003872743.1| flagellar basal body rod protein [Paenibacillus polymyxa E681] gi|305860417|gb|ADM72205.1| Flagellar basal body rod protein [Paenibacillus polymyxa E681] Length = 275 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 43/258 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + + +++QRL +ADN++N +TVG+++ + F +V+ ++ Q +++ Sbjct: 1 MNNSMIGAMVSMASVQQRLDLIADNIANINTVGYKSKQGSFEDVLANVQ---QQPSTYLQ 57 Query: 61 SGKE--------YLSK--------EVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 +G+ Y K E G TG D A++G+A F ++ TRDG Sbjct: 58 NGRAMPLGYNLGYGVKTAAIMKNMEQGPLKETGLPTDLAIQGNAMFEVQGNGQKAWTRDG 117 Query: 105 RFKVTDDGS------LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE--ISQKGKVIA 156 F D + L +A G Y VLD VP+ P ++ + GE I G Sbjct: 118 SFHFVPDPNDSATMMLTTAEG-YSVLDNNDVPVTAPAGSKVA-ISSDGELLIRANGTGAP 175 Query: 157 TMG----LYSVDMSQGFVRREN------SGISP----NIPPTPLEDLSGVTVKRGFLEDS 202 T+G L V +G +R++ +G++ + V+V+ G+LE+S Sbjct: 176 TVGQRIKLMDVQRPEGLEQRDDNLFVLLNGVTEANVFGAAGVAGAVPADVSVRSGYLEES 235 Query: 203 NANSMYEMGQMIHLTQKF 220 N + EM M+ + + + Sbjct: 236 NVDLAGEMTDMMQVQRMY 253 >gi|313200562|ref|YP_004039220.1| flagellar basal-body rod protein flgf [Methylovorus sp. MP688] gi|312439878|gb|ADQ83984.1| flagellar basal-body rod protein FlgF [Methylovorus sp. MP688] Length = 246 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 17/236 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ LEQ+ +T A N++N + GF+ +V V + + + +FV Sbjct: 12 AKHILEQQ-ATTAHNLANATSTGFKA-QVDSFRAVPIVSEGLPTR-AFVIDTTVATDFTP 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ I T +LD A++G W A++ G TR+G KV ++G L +A G + D Sbjct: 69 GTIIGTSRDLDIAIQGRGWIAVQRLDGSEAYTRNGSLKVNENGILQTADGLTVLGDGG-- 126 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSVDMSQGFVRRENSGISPNI 181 PI IP DE +G+ G +S +V + + L + D S + R G+ Sbjct: 127 PITIP-PDERIAIGKDGTVSTVSRVTVPSPTNIVGRIKLVNPDEST--LVRGTDGLFSTQ 183 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P + + + V G LE SN N + M MI L ++F + L++ E + +A Sbjct: 184 NGQPAQADANIQVASGALEGSNVNVVDAMVNMISLARQFETQMKLLENAENNANKA 239 >gi|224437224|ref|ZP_03658201.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313143684|ref|ZP_07805877.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313128715|gb|EFR46332.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] Length = 277 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 103/257 (40%), Gaps = 72/257 (28%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKNDIDQKISF 58 G+ Q RL +++N++N +T GF+ V + + I++ + F Sbjct: 11 GMVTQF---NRLDLISNNLANLNTTGFKRDDVVIGDYLRLFETHKEQLPIEDHTRKAAKF 67 Query: 59 VAS--------GKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVT 109 + +EY + VGS T LDFAL+ D A+F +++P GI TRDG F + Sbjct: 68 LNRTMNRVPIISEEYTDRSVGSLAQTDNPLDFALQRDNAFFVIKTPDGIRYTRDGNFNID 127 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT-MGLYSVDMSQG 168 +DG LV+ G + G SQ+G +I T M L S + Sbjct: 128 NDGHLVNKDGHLV-------------------LSRDGLDSQEGIIIPTGMYLESDNNGNL 168 Query: 169 FVRRENSG------------------------ISPNIPPTPLEDL-------SGVTVKRG 197 ++R N+ + N+ P + L + + +G Sbjct: 169 YLRNINNDAIAEQINIGALAVVGFENPRYLKKVGKNLYEYPQDRLDERDIMQNSAMIAQG 228 Query: 198 FLEDSNANSMYEMGQMI 214 FLE SN N++ EM +I Sbjct: 229 FLEKSNVNAVLEMSSLI 245 >gi|239628977|ref|ZP_04672008.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519123|gb|EEQ58989.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 255 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 118/262 (45%), Gaps = 29/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S+ ++A A +Q L A+NM+N T G+++++ F++++ + D+ + Sbjct: 1 MNISYYTAVSAMNAFQQDLDVTANNMANVGTNGYKSMRSDFNDLL-YTQMDMRPEAQVGH 59 Query: 59 -VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKV--TDDG 112 V + + + G F TG LDFA+ G A+FA+ E TRDG F++ T+DG Sbjct: 60 GVKNNGPGTTFQQGIFRKTGRALDFAVSGKAFFAIQTSEDEEEPAYTRDGAFQISSTEDG 119 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQ 167 + ++ S VLD PI++ K E G G+ + +GL+ + + Sbjct: 120 NYLTTSDGSYVLDWDGEPIELEYK-----AAEDGRGDDTGELDLDSIADRIGLFVCENPE 174 Query: 168 GFVRR--------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G + E SG +I ED +V LE SNA+ EM ++ TQ+ Sbjct: 175 GLIHAGSNLFRTGEASGEWMSIEDLD-EDQEKSSVMTRTLEMSNADMSTEMVNLMQ-TQR 232 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + I M E I N+ Sbjct: 233 AFQLNSRIVSTADQMEEMINNL 254 >gi|229825259|ref|ZP_04451328.1| hypothetical protein GCWU000182_00612 [Abiotrophia defectiva ATCC 49176] gi|229790631|gb|EEP26745.1| hypothetical protein GCWU000182_00612 [Abiotrophia defectiva ATCC 49176] Length = 258 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 27/247 (10%) Query: 16 EQRLSTVADNMSNTDTVGF-----------RTIKVKFSEVVGAIKNDIDQKISF-VASGK 63 ++R+ + +N++N T GF R + +K +V A + ++S V G+ Sbjct: 16 QRRMDIMTNNLANATTAGFKMESSSSQSFDRVLGIKIRDVSEAFNDHSIGQMSLGVKVGE 75 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL--------ESPRGIILTRDGRFKVTDDGSLV 115 + G+ T + D AL G+ +FA+ ES + TRDG F++T DG + Sbjct: 76 VFTDYSQGALRDTAGKYDLALSGEGFFAVRYVDKNGNESTK---YTRDGNFRLTKDGHVT 132 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 G L S +++P E +VG G +S +VI + + + + ++ + Sbjct: 133 DVYGNQ--LRTESGVLRVPLDSEDISVGIDGTVSVNNQVIDKIKIVDFE-NYDYIEKFGD 189 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + + E S V +G++E SN NS+ EM +I +T+ + + +I ++ M Sbjct: 190 NLYQTVEGAT-EKESEAQVLQGYIEQSNVNSVREMVNLITITRAYEAGQKMIQSSDSIME 248 Query: 236 EAIRNIA 242 A+ ++ Sbjct: 249 SAVNSVG 255 >gi|320536024|ref|ZP_08036083.1| putative flagellar basal-body rod protein FlgF [Treponema phagedenis F0421] gi|320147123|gb|EFW38680.1| putative flagellar basal-body rod protein FlgF [Treponema phagedenis F0421] Length = 271 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 40/264 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV-------GAIKNDIDQKIS 57 G+ AQ +Q+L +++N++N DT ++ TI F E++ G IKN + Sbjct: 11 GMNAQ---QQQLDVISNNLANVDTTSYKRDVTINKNFPELLLRRTNDDGVIKNPFGSSDA 67 Query: 58 FVASGKEYLSKEV---------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 GK L EV GS T + D ALEG +FA+++P+ TR+G F V Sbjct: 68 APIIGKLGLGVEVNEVFTEFEQGSLKQTHSPSDIALEGKGFFAVQTPQREEYTRNGNFLV 127 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM--- 165 +G L++ G YPVL +I +D + + + GEI + +D Sbjct: 128 GVEGYLMTKEG-YPVLGENG---RIFLQDMEYKINQNGEIYARPITEPDTDAVFLDRLKI 183 Query: 166 ----SQGFVRRENSGISPNIPPT-PLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHL 216 + +++++ S + P + P G VTV+ GF+E SN N + EM +MI + Sbjct: 184 VTFENDRYLQKKGSSFYLDTPVSGPAIAAEGPDRPVTVQ-GFIEASNVNVVNEMVRMIEV 242 Query: 217 TQKFNSITTLIDENEKSMLEAIRN 240 + + + I ++E +M+ + N Sbjct: 243 NRAYEANQKTI-QSEDTMMAKLWN 265 >gi|226939373|ref|YP_002794446.1| FlgF1 [Laribacter hongkongensis HLHK9] gi|226714299|gb|ACO73437.1| FlgF1 [Laribacter hongkongensis HLHK9] Length = 247 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 30/243 (12%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A + L+Q+ T A+N++N T GF+ F + + D ++ + Sbjct: 12 AKHVELQQQ--TTANNLANAHTPGFKAELNAFRAL--PVVGDGTPTRAYSVDHTTGHDES 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G I+TG + DFA+ G WFA++ P+G TR G F + ++G + + G+ V + Sbjct: 68 QGPMITTGNDQDFAVRGRGWFAVQDPQGNEAYTRAGGFVLDENGIMRTRDGRVIVGEGG- 126 Query: 129 VPIQIPQKDEIFNVGEKGEIS--QKGKV---------IATMGLYSVDM---SQGFVRREN 174 PI +P ++ +GE G +S Q ++ I +G D+ G RR + Sbjct: 127 -PITVPPNSQVM-IGEDGTVSAVQTDQIPRTVQVVDRIKLVGGEPRDLFKGEDGLFRRRD 184 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 I+ E GV V G LE SN N + + QMI ++F L+ +++ Sbjct: 185 GQIA--------EADDGVRVATGMLEGSNVNPVDALTQMISHGRQFEFNVKLMQNADQNA 236 Query: 235 LEA 237 A Sbjct: 237 RRA 239 >gi|323498419|ref|ZP_08103415.1| flagellar basal body rod protein FlgF [Vibrio sinaloensis DSM 21326] gi|323316492|gb|EGA69507.1| flagellar basal body rod protein FlgF [Vibrio sinaloensis DSM 21326] Length = 249 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L A+N++N T GFR D+ Q S A G+ S+ Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLAQARSMQAYGEGLPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 + GS I+TG +LD +EG+ W A+ G LTR+G KV +G LVS +G V Sbjct: 63 GHNFQQGSVITTGRDLDVTIEGNGWIAVLDKSGKEGLTRNGNLKVDVNGLLVSGNGNL-V 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-------SQGFVRRENSG 176 + PI +P +G G IS + + VD +Q + N Sbjct: 122 IGETGGPITLPIPLSKVEIGTDGTISVVPQGAPADAIEVVDRIKLTNTNNQSLFKDVNGL 181 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P E + V + G +E SN N++ EM +I L ++F Sbjct: 182 FRAKDPNAAYEADADVKLLTGAIEGSNVNAIGEMTSLIDLQRQF 225 >gi|300870897|ref|YP_003785768.1| flagellar hook-basal body complex protein FlhO [Brachyspira pilosicoli 95/1000] gi|300688596|gb|ADK31267.1| flagellar hook-basal body complex protein, FlhO [Brachyspira pilosicoli 95/1000] Length = 282 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 25/162 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR----TIKVKFSEVVGAI------------KND 51 G + +A + RL VA+N++N D GF+ T K F E++ A D Sbjct: 8 GASGMIAEQYRLDVVANNLANVDKPGFKRDTATFKA-FPEMMAARTEDDGVVIFPLGSTD 66 Query: 52 IDQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I + + +G E + E GS TG +LD AL +FA+E+P G TR+G F Sbjct: 67 IRPYVGRLGTGVEVNEVFTEWEQGSLRETGNQLDIALGDKGFFAVETPHGERYTRNGSFL 126 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 + D LV+ G Y V+ IQI K FN+ E+G IS Sbjct: 127 IDKDNYLVTKHG-YKVMGENGY-IQI--KSNNFNIDEEGRIS 164 >gi|242278484|ref|YP_002990613.1| flagellar basal body rod protein FlgG [Desulfovibrio salexigens DSM 2638] gi|242121378|gb|ACS79074.1| flagellar basal-body rod protein FlgG [Desulfovibrio salexigens DSM 2638] Length = 260 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------------SEVVGAI 48 M S +A + + +++N++N +T GF+ +V+F SE G Sbjct: 1 MMRSLWTAATGMVAQQTHIDVLSNNLANVNTQGFKKSRVEFEDLMYQTMRIAGSETEGGN 60 Query: 49 KNDIDQKISF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 + +I S ++ S+ GSF STG LD A+EG+ +F ++ TR G Sbjct: 61 RLPTGMQIGMGVKEVSIHKFFSQ--GSFESTGNPLDIAIEGNGFFLVDRNGEDAYTRSGA 118 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQ-----IPQKDEIFNVGEKG-EISQKG----KVI 155 FK+ DG LV+++G YP+ +VP + + + I + + G E+S I Sbjct: 119 FKLDSDGRLVTSNG-YPLQPEFTVPAEAVNVVVSEDGHIAALDKNGTELSSADITIYDFI 177 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL +V + +V E SG + I TP ED G T+ +G+LE SN + EM +I Sbjct: 178 NEAGLNAVGKNL-YVETEASGAA--IQGTPGEDNFG-TLAQGYLEGSNVELVDEMVGLIV 233 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ SML+ N+ Sbjct: 234 GQRAYETNSKAITTSD-SMLQTAINV 258 >gi|253998487|ref|YP_003050550.1| flagellar basal-body rod protein FlgF [Methylovorus sp. SIP3-4] gi|253985166|gb|ACT50023.1| flagellar basal-body rod protein FlgF [Methylovorus sp. SIP3-4] Length = 246 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 17/236 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ LEQ+ +T A N++N + GF+ +V V + + + +FV Sbjct: 12 AKHILEQQ-ATTAHNLANATSTGFKA-QVDSFRAVPIVSEGLPTR-AFVIDTTVATDFTP 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ I T +LD A++G W A++ G TR+G KV ++G L +A G + D Sbjct: 69 GTIIGTSRDLDIAIQGRGWIAVQRLDGSEAYTRNGSLKVNENGILQTADGLTVLGDGG-- 126 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSVDMSQGFVRRENSGISPNI 181 PI IP DE +G G +S +V + + L + D S + R G+ Sbjct: 127 PITIP-PDERIAIGRDGTVSTVSRVTVPSPTNIVGRIKLVNPDEST--LVRGTDGLFSTQ 183 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P + + + V G LE SN N + M MI L ++F + L++ E + +A Sbjct: 184 NGQPAQADANIQVASGALEGSNVNVVDAMVNMISLARQFETQMKLLENAENNANKA 239 >gi|78777302|ref|YP_393617.1| flagellar basal body rod protein [Sulfurimonas denitrificans DSM 1251] gi|78497842|gb|ABB44382.1| Flagellar basal body rod protein [Sulfurimonas denitrificans DSM 1251] Length = 276 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 38/249 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISF 58 MQ+ + A + RL T+A+N++N +TVGF+ + + + K D+ + Sbjct: 1 MQSGYYSSAAGMVTQFNRLDTIANNLANVNTVGFKEDNLIVGDFMRLYKEARDELPNANH 60 Query: 59 VASGKEYLSK---------------EVGSFISTGTELDFALEGDAWFAL-ESPRGIILTR 102 ++L++ +G + LD AL + F L ++P GI LTR Sbjct: 61 TKEAAQFLNRAMNKAPQVVDAYTDFSLGVMQKSNNSLDMALSKEGLFFLVKTPEGIRLTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG-EISQKGKVIA----T 157 DG F D+G LV+ G Y VL I ++ IFN G+ EI + G+++ + Sbjct: 121 DGTFTKDDEGKLVTKQG-YEVLPSDYF---ISKQPIIFNQGDSAIEIDKNGQILTNIPNS 176 Query: 158 MGLYSVD---MSQ----GFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANS 206 M L ++ ++Q F+++E G+ +E L V +GF+E SN N+ Sbjct: 177 MTLNQLNRLFIAQPDNIDFLKKEGDGLYRYDGAGGVEGLVSFDGSEAVLQGFIEKSNVNA 236 Query: 207 MYEMGQMIH 215 + M Q+I Sbjct: 237 VKMMTQLIE 245 >gi|229917023|ref|YP_002885669.1| flagellar basal body rod protein [Exiguobacterium sp. AT1b] gi|229468452|gb|ACQ70224.1| flagellar basal body rod protein [Exiguobacterium sp. AT1b] Length = 257 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 27/245 (11%) Query: 14 ALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 AL+++ +++N+ N T GF+ + F E++ A ++ D S V LS V Sbjct: 14 ALQRQQEILSNNLGNVRTPGFKASDGVVRSFPEMLLAQVSNPDNAKSRVKGEVGTLSMGV 73 Query: 71 -----------GSFISTGTELDFALE------GDAWFALESPRGIILTRDGRFKVTDDGS 113 GS +G+ D L+ G FA+E + T +GRF + + Sbjct: 74 YLQETMPRFSAGSITESGSPTDLYLKAPTDFTGAPMFAVEQGGETLYTTNGRFSIDEALF 133 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 L SA G Y +L IQ+P + F VG+ G I+ G+ +AT+G Y +D + Sbjct: 134 LRSADGGY-ILSDEGERIQLPSSE--FQVGKDGVITSLGQNVATLGAYQIDDLTTLEQVG 190 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N P P + V V +GF+E++N N M ++ ++F + ++ +KS Sbjct: 191 NDWRVTGDAPAPAQ----VEVLQGFIEEANVNLDQTMADLMMTYRQFEANQKVVQAYDKS 246 Query: 234 MLEAI 238 AI Sbjct: 247 AERAI 251 >gi|269103189|ref|ZP_06155886.1| flagellar basal-body rod protein FlgF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163087|gb|EEZ41583.1| flagellar basal-body rod protein FlgF [Photobacterium damselae subsp. damselae CIP 102761] Length = 249 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 13/223 (5%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L A+N++N T GFR ++ + + A + ++ +A Y + GS I+TG Sbjct: 19 LQVRANNLANVSTTGFRA-DLEQARSMQAYGEGVPDRVFTMAERPGYNFTQ-GSVITTGR 76 Query: 79 ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A+EGD W A++ G TR G K+ G L +++G+ VL PI IP Sbjct: 77 DLDVAVEGDGWLAVQDASGNEAYTRAGHLKIDQTGMLQNSNGQL-VLGQNDSPIFIPLPI 135 Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP--------PTPLEDL 189 +G G IS + + +D + V+ +N + + P + Sbjct: 136 SKIEIGRDGTISVLPQGAPPEAMAQIDRIK-LVKTDNHQLFKDADGLFKFKGGQEPQQAD 194 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + + + G LE SN N++ EM +I L + F L+ E+ Sbjct: 195 ASIRLLNGTLEGSNVNAVGEMTALIDLQRHFEMQVKLMKTAEE 237 >gi|153940763|ref|YP_001391938.1| flagellar basal body rod protein FlgG [Clostridium botulinum F str. Langeland] gi|152936659|gb|ABS42157.1| flagellar basal body rod protein [Clostridium botulinum F str. Langeland] gi|295319958|gb|ADG00336.1| flagellar basal body rod protein [Clostridium botulinum F str. 230613] Length = 263 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 41/241 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KNDIDQKIS 57 GL AQ + +L ++++N++N +TVG++ V F E+V + +I Sbjct: 11 GLIAQ---QNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRPEIQTGTG 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 A+ + + G ++TG + D A++G +F + P G R G F V +G LV Sbjct: 68 VKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMPDGNYAYERSGNFVVDRNGMLVD 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEIF-----------NVGEKGEISQK-----GKVIATMGL 160 +G + + +Q P +I N+ E G IS K K++ + + Sbjct: 128 ENG-----NRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGMNKMVGKINI 182 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMYEMGQMIHLTQ 218 Y+ S FV + G + IP + + V++ +GFLE+SN ++ EM +MI +TQ Sbjct: 183 YNAVGSDAFV---SIGRNLYIPQEGVNVFTNNDVSILQGFLENSNVDAGKEMTEMI-ITQ 238 Query: 219 K 219 + Sbjct: 239 R 239 >gi|254496888|ref|ZP_05109736.1| flagellar basal body rod protein FlgF [Legionella drancourtii LLAP12] gi|254353907|gb|EET12594.1| flagellar basal body rod protein FlgF [Legionella drancourtii LLAP12] Length = 247 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 98/234 (41%), Gaps = 30/234 (12%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 R +A+N++N T GFRT + + SFV G I+TG Sbjct: 18 RQEIIANNLANAATPGFRTDLYQAQTMYAQAAGSNSSGNSFVVQNTNSFDLSGGDLITTG 77 Query: 78 TELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 LD A+ G+ W A+ G T+ G V +G LV+ASGK + + PI IP Sbjct: 78 RNLDIAINGNGWLAVRDSTGKEAYTKTGSLHVDANGQLVTASGKAVIGNGG--PISIPPA 135 Query: 137 DEIFNVGEKGEIS--------QKGKVIATMGLYS------VDMSQGFVRRENSGISPNIP 182 I ++G G IS Q V+ + + S V + G + + G++P Sbjct: 136 QSI-DIGTDGTISIVPLGDTAQSPAVVDRVKMVSLPKDNIVKNADGLFQLKTGGVAPFD- 193 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF----NSITTLIDENEK 232 S + + G LE SN + +M MI + F N ++T+ D ++K Sbjct: 194 -------SNIRLISGALEGSNVQPVEQMVAMITAGRDFETHMNLMSTVSDNSQK 240 >gi|300114797|ref|YP_003761372.1| flagellar basal-body rod protein FlgG [Nitrosococcus watsonii C-113] gi|299540734|gb|ADJ29051.1| flagellar basal-body rod protein FlgG [Nitrosococcus watsonii C-113] Length = 261 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GA--IKNDIDQKISF 58 GL AQ + R++T+++N++N +T GF+ + F +++ GA +N + Sbjct: 11 GLDAQ---QTRMATISNNLANVNTTGFKRDRAVFEDLLYQTVRQPGAQSSQNTLLPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G ++ E G TG LD A++G +F + P G + TRDG F++ +G Sbjct: 68 LGTGVRTVATEKLFTQGGLTQTGNSLDMAIQGRGFFQVLMPDGSLAYTRDGTFQIDANGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATM 158 LV++SG YPV I IPQ VG G +S Q G + I Sbjct: 128 LVTSSG-YPV----QPGITIPQSALSVTVGSDGIVSVLMPGDGTPVQAGNLQLADFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 GL + F SG++ T + L+G+ T+ +G LE +N N + E+ MI Sbjct: 183 GLQPTGNNL-FKETAASGVA----QTGIPGLNGIGTLVQGALEGANVNVVEELVNMIETQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|260893868|ref|YP_003239965.1| fagellar hook-basal body protein [Ammonifex degensii KC4] gi|260866009|gb|ACX53115.1| fagellar hook-basal body protein [Ammonifex degensii KC4] Length = 266 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 27/237 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ + R+ +A+N++N +T GF+ + F +++ + V G + Sbjct: 8 GVSGLRVHQIRMDVIANNIANINTTGFKAARANFQDILSQTLGRSAVNTTQVGLGVSLAA 67 Query: 68 KE----VGSFISTGTELDFALEGDAWFALE-------SPRGIILTRDGRFKVTDDGSLVS 116 + G+ +TG LD A+EG+ +F ++ S + TRDG F + G +V+ Sbjct: 68 IDNIMTQGALQTTGRALDLAIEGNGFFVVKPVDSSGNSVNHPLYTRDGTFYIDKSGYIVN 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEI--FNVGEKGEI----SQKGKVIATMGLYSVDMSQGFV 170 A G Y + ++ IQI D+I ++G G I S K+ +GL + + Sbjct: 128 AQG-YRLQSTSNDNIQIADPDKIVSISIGSDGVISVVKSDGTKITYNIGLVTFKNPESLQ 186 Query: 171 RRENS--GISPNI--PPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 R + ++PN+ P TP G ++ GFLE SN + E MI +TQ+ Sbjct: 187 RVGANLWDVTPNVTDPATPTPGAPGTDGRGYIRSGFLEMSNVDLAQEFTNMI-ITQR 242 >gi|149375033|ref|ZP_01892806.1| Flagellar basal body rod protein [Marinobacter algicola DG893] gi|149360922|gb|EDM49373.1| Flagellar basal body rod protein [Marinobacter algicola DG893] Length = 250 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 123/267 (46%), Gaps = 43/267 (16%) Query: 1 MQTSFNIGL--AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS 57 M + +G+ A Q L QR A+N++N T GF K F++ + + + Sbjct: 1 MDKALYLGMSGAKQNMLSQRAH--ANNLANVSTTGF---KADFAQARSMPVFGEHHPTRA 55 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + + + G+ + TG +LD A+EGD W A+++ +G + TR G ++ +G + Sbjct: 56 YAMAERPGTDLSAGALMDTGRKLDVAVEGDGWLAVQNQQGEEVFTRSGSMQIDVNGLMRL 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG----LYSVDMSQ----- 167 +SG+ + + P+ +P D + +G G IS V+ G L VD + Sbjct: 116 SSGEMVMGNGG--PVALPPFDNV-QIGADGTIS----VVPVGGPPDQLVEVDRLKLVNPP 168 Query: 168 ---------GFVRRE-NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GF+RR+ + + PP + + V GFLE SN N++ EM + L+ Sbjct: 169 RDALEKGVDGFIRRKADQALDGPEPPD-----ATMRVASGFLESSNVNAVEEMISNLQLS 223 Query: 218 QKFN---SITTLIDENEKSMLEAIRNI 241 +++ I T +EN ++ ++N+ Sbjct: 224 RQYEMQVKIMTTANENAEASARLLQNL 250 >gi|323495376|ref|ZP_08100453.1| flagellar basal body rod protein FlgF [Vibrio brasiliensis LMG 20546] gi|323310299|gb|EGA63486.1| flagellar basal body rod protein FlgF [Vibrio brasiliensis LMG 20546] Length = 249 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 37/225 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L A+N++N T GFR D+ Q S A G+ S+ Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLAQARSMQAYGEGLPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 + GS I+TG +LD ++G W ++ G LTR+G KV +G LVS +G V Sbjct: 63 GHNFQQGSVITTGRDLDVTIQGQGWISVLDKTGQEGLTRNGNLKVDVNGLLVSGNGNL-V 121 Query: 124 LDMASVPIQIP---QKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENS 175 L PI +P K EI N G + Q +++ + L S + +Q + N Sbjct: 122 LGETGAPITLPIPVSKVEIGNDGTISVVPQGAPADAIEIVDRIKLTSTN-NQSLFKDVNG 180 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P E + V + G +E SN N++ EM +I L ++F Sbjct: 181 LFRAKDPNAAYEADADVKLLTGAIEGSNVNAIGEMTSLIDLQRQF 225 >gi|23500854|ref|NP_700294.1| flagellar hook protein FlgE [Brucella suis 1330] gi|38257619|sp|Q8FUS9|FLGE_BRUSU RecName: Full=Flagellar hook protein FlgE gi|23464518|gb|AAN34299.1| flagellar hook protein FlgE [Brucella suis 1330] Length = 396 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|21242725|ref|NP_642307.1| flagellar basal body rod protein FlgG [Xanthomonas axonopodis pv. citri str. 306] gi|78047584|ref|YP_363759.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624042|ref|ZP_06702805.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665577|ref|ZP_06730858.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325927973|ref|ZP_08189194.1| flagellar basal-body rod protein FlgG [Xanthomonas perforans 91-118] gi|21108201|gb|AAM36843.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas axonopodis pv. citri str. 306] gi|78036014|emb|CAJ23705.1| flagella basal body rod protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601661|gb|EFF45635.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604675|gb|EFF48045.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541658|gb|EGD13179.1| flagellar basal-body rod protein FlgG [Xanthomonas perforans 91-118] Length = 261 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 42/262 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + R+S +++N++NT+T GF+ + F +++ G+ Sbjct: 11 GLDAQ---QTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G +S + GS TG LD + G +F ++ P G TRDG F++ G Sbjct: 68 LGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 LV+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 128 LVTNSG-YPL----QPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPS 182 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQ 218 G FV SG + N P L+G+ T +G LE SN N++ E+ MI TQ Sbjct: 183 GLQAKGENLFVETTASGPAQNGTP----GLNGLGTTVQGALEGSNVNTVEELVSMIE-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + + SML + N Sbjct: 238 RAYEMNAKAISTTDSMLGYLNN 259 >gi|187778772|ref|ZP_02995245.1| hypothetical protein CLOSPO_02367 [Clostridium sporogenes ATCC 15579] gi|187772397|gb|EDU36199.1| hypothetical protein CLOSPO_02367 [Clostridium sporogenes ATCC 15579] Length = 266 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 41/241 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KNDIDQKIS 57 GL AQ + +L ++++N++N +TVG++ V F E+V + +I Sbjct: 14 GLIAQ---QNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRPEIQTGTG 70 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 A+ + + G ++TG + D A++G +F + P G R G F + +G LV Sbjct: 71 VKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMPDGNYAYERSGNFVIDRNGMLVD 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIF-----------NVGEKGEISQK-----GKVIATMGL 160 +G + + +Q P +I N+ E G IS K K+I + + Sbjct: 131 ENG-----NRLEIQLQQPAGSQILNRIGGFNKNNINIAEDGSISAKDVDGINKMIGKINI 185 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDL--SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 Y+ S FV + G + IP + + V++ +GFLE+SN ++ EM +MI +TQ Sbjct: 186 YNAVGSDAFV---SIGRNLYIPQEGVNVFVNNDVSMLQGFLENSNVDAGKEMTEMI-ITQ 241 Query: 219 K 219 + Sbjct: 242 R 242 >gi|86356330|ref|YP_468222.1| flagellar hook protein FlgE [Rhizobium etli CFN 42] gi|86280432|gb|ABC89495.1| flagellar hook protein [Rhizobium etli CFN 42] Length = 434 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 22/117 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTV+DN++N +T G++ + FS +V G ++ + Q +S Sbjct: 16 AQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVS------ 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ GD +F ++ P G +LTR G F+ D+G+LV+A+G Sbjct: 70 -----DQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAAG 121 >gi|306845419|ref|ZP_07477993.1| flagellar hook protein FlgE [Brucella sp. BO1] gi|306274162|gb|EFM55978.1| flagellar hook protein FlgE [Brucella sp. BO1] Length = 396 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|300693340|ref|YP_003749313.1| flgg: flagellar basal-body rod protein [Ralstonia solanacearum PSI07] gi|299075377|emb|CBJ34672.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum PSI07] Length = 260 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 114/254 (44%), Gaps = 39/254 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-----VAS 61 A + +L +++N++N +T GF+ + F +++ GA Q+ + + + Sbjct: 14 AQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGA---QSSQQTTLPSGMQIGT 70 Query: 62 GKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 G ++ E G+ TG D A+ G+ +F ++ P G + TRDG F++ G LV+ Sbjct: 71 GTRIVATERLHTQGNLQQTGNSTDAAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS-------QKGKVIATMGLYSVDM 165 +SG YPV +VP KD + V G ++ Q I GL S+ Sbjct: 131 SSG-YPVQPAITVPQNATSLTIAKDGVVTVTTPGSVNSTQVGTFQLANFINPAGLRSMGE 189 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTV-KRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + E SG + P +G+ V + ++E SN N + EM MI TQ+ I Sbjct: 190 NL-YAETEASGTANLAAP----GANGIGVLNQNYVETSNVNVVEEMVNMIQ-TQRAYEIN 243 Query: 225 TLIDENEKSMLEAI 238 + + MLE + Sbjct: 244 SKAVQTSDQMLEKL 257 >gi|157147100|ref|YP_001454419.1| flagellar basal body rod protein FlgG [Citrobacter koseri ATCC BAA-895] gi|157084305|gb|ABV13983.1| hypothetical protein CKO_02877 [Citrobacter koseri ATCC BAA-895] Length = 261 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 115/246 (46%), Gaps = 49/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----NDIDQK-------- 55 GLAAQ A +++ +++N++N +T GF+ + F+++ + +DQ Sbjct: 11 GLAAQDA---KMTAISNNLANVNTTGFKRDRAMFADLFYQNQRTPGGQLDQNNIAPTGIQ 67 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + KE+ VGS +TG D A+ G +F +E+ G I TR G F+ T Sbjct: 68 YGTGVKIVGTQKEFT---VGSIQNTGQTFDVAITGQGFFQVETADGDIAYTRAGNFQKTP 124 Query: 111 DGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS----------QKGKV----- 154 DG L +A G + VP I++P+ + +G+ G I+ + G++ Sbjct: 125 DGVLTNAQG------LPLVPQIELPENVKDLQIGKDGTITATVAGETDPVELGQLTLVNF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + GL ++ G + RE + + P ED G +++G LE SN + EM MI Sbjct: 179 VNPAGLEAIG---GNLYRETAASGEAVEGVPGEDALG-QLEQGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKF 220 + + + Sbjct: 235 TVQRAY 240 >gi|254255089|ref|ZP_04948406.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] gi|124899734|gb|EAY71577.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] Length = 261 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 46/261 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK---------- 63 A + +L T+A+N++N +TVGF+ + F ++ + +I+ A+G Sbjct: 14 AQDAKLQTIANNLANVNTVGFKRDRAVFEDLFYRTEQQPGAQIADNATGPGVQMGNGTRL 73 Query: 64 --EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + G+ +TG LD A+ GD + +E G TR G+ + D+G L +A G Sbjct: 74 VGTQKTFTAGNLQTTGQPLDVAIVGDGFLQVEMANGETGYTRAGQLRRNDEGRLTNAQG- 132 Query: 121 YPVLDMASVP-IQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVD 164 + VP I IP +GE G +S Q + GL +V Sbjct: 133 -----LPLVPTIDIPADATSVTIGENGTVSVTTGSSAVPTEVGRLQLANFVNPAGLLAVG 187 Query: 165 MSQGFVRRENSGISPNIPPT---PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + FV SG PP+ P D GV V++G LE SN ++ EM +MI Q+ Sbjct: 188 GNL-FVETGASG-----PPSEGEPGADGLGV-VRQGALEGSNVQAVEEMVEMI-TAQRTY 239 Query: 222 SITTLIDENEKSMLEAIRNIA 242 ++T + SM++ + +A Sbjct: 240 EMSTKVLSAADSMMQYLAQVA 260 >gi|299068734|emb|CBJ39973.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum CMR15] Length = 260 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 39/254 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-----VAS 61 A + +L +++N++N +T GF+ + F +++ GA Q+ + + + Sbjct: 14 AQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGA---QSSQQTTLPSGMQIGT 70 Query: 62 GKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 G ++ E G+ TG D A+ G+ +F ++ P G + TRDG F++ G LV+ Sbjct: 71 GTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS-------QKGKVIATMGLYSVDM 165 +SG YPV +VP KD V G ++ Q I GL S+ Sbjct: 131 SSG-YPVQPAVTVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGE 189 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTV-KRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + E SG + P +GV V + ++E SN N + EM MI TQ+ I Sbjct: 190 NL-YAETEASGTANLAAP----GANGVGVLNQNYVETSNVNVVEEMVNMIQ-TQRAYEIN 243 Query: 225 TLIDENEKSMLEAI 238 + + MLE + Sbjct: 244 SKAVQTSDQMLEKL 257 >gi|254699262|ref|ZP_05161090.1| flagellar hook protein FlgE [Brucella suis bv. 5 str. 513] gi|254706497|ref|ZP_05168325.1| flagellar hook protein FlgE [Brucella pinnipedialis M163/99/10] gi|254711218|ref|ZP_05173029.1| flagellar hook protein FlgE [Brucella pinnipedialis B2/94] gi|254711818|ref|ZP_05173629.1| flagellar hook protein FlgE [Brucella ceti M644/93/1] gi|254714887|ref|ZP_05176698.1| flagellar hook protein FlgE [Brucella ceti M13/05/1] gi|256015898|ref|YP_003105907.1| flagellar hook protein [Brucella microti CCM 4915] gi|256030153|ref|ZP_05443767.1| flagellar hook protein FlgE [Brucella pinnipedialis M292/94/1] gi|256158332|ref|ZP_05456236.1| flagellar hook protein FlgE [Brucella ceti M490/95/1] gi|256252734|ref|ZP_05458270.1| flagellar hook protein FlgE [Brucella ceti B1/94] gi|260166795|ref|ZP_05753606.1| flagellar hook protein FlgE [Brucella sp. F5/99] gi|261216577|ref|ZP_05930858.1| flagellar hook protein flgE [Brucella ceti M13/05/1] gi|261219813|ref|ZP_05934094.1| flagellar hook protein flgE [Brucella ceti B1/94] gi|261313950|ref|ZP_05953147.1| flagellar hook protein flgE [Brucella pinnipedialis M163/99/10] gi|261318810|ref|ZP_05958007.1| flagellar hook protein flgE [Brucella pinnipedialis B2/94] gi|261319447|ref|ZP_05958644.1| flagellar hook protein flgE [Brucella ceti M644/93/1] gi|261749702|ref|ZP_05993411.1| flagellar hook protein flgE [Brucella suis bv. 5 str. 513] gi|261756173|ref|ZP_05999882.1| trypsin inhibitor Kunitz [Brucella sp. F5/99] gi|265987183|ref|ZP_06099740.1| flagellar hook protein flgE [Brucella pinnipedialis M292/94/1] gi|265996846|ref|ZP_06109403.1| flagellar hook protein flgE [Brucella ceti M490/95/1] gi|255998558|gb|ACU50245.1| flagellar hook protein [Brucella microti CCM 4915] gi|260918397|gb|EEX85050.1| flagellar hook protein flgE [Brucella ceti B1/94] gi|260921666|gb|EEX88234.1| flagellar hook protein flgE [Brucella ceti M13/05/1] gi|261292137|gb|EEX95633.1| flagellar hook protein flgE [Brucella ceti M644/93/1] gi|261298033|gb|EEY01530.1| flagellar hook protein flgE [Brucella pinnipedialis B2/94] gi|261302976|gb|EEY06473.1| flagellar hook protein flgE [Brucella pinnipedialis M163/99/10] gi|261736157|gb|EEY24153.1| trypsin inhibitor Kunitz [Brucella sp. F5/99] gi|261739455|gb|EEY27381.1| flagellar hook protein flgE [Brucella suis bv. 5 str. 513] gi|262551143|gb|EEZ07304.1| flagellar hook protein flgE [Brucella ceti M490/95/1] gi|264659380|gb|EEZ29641.1| flagellar hook protein flgE [Brucella pinnipedialis M292/94/1] Length = 396 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|225628428|ref|ZP_03786462.1| flagellar hook protein FlgE [Brucella ceti str. Cudo] gi|225616274|gb|EEH13322.1| flagellar hook protein FlgE [Brucella ceti str. Cudo] Length = 456 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 70 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 129 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 130 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 178 Query: 117 ASGKY 121 ++G Y Sbjct: 179 SAGYY 183 >gi|163850063|ref|YP_001638106.1| flagellar basal body rod protein FlgG [Methylobacterium extorquens PA1] gi|218528666|ref|YP_002419482.1| flagellar basal body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240137197|ref|YP_002961666.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254559209|ref|YP_003066304.1| cell-distal portion of basal-body rod biosynthesis protein [Methylobacterium extorquens DM4] gi|163661668|gb|ABY29035.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens PA1] gi|218520969|gb|ACK81554.1| flagellar basal-body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240007163|gb|ACS38389.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254266487|emb|CAX22251.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens DM4] Length = 262 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 43/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQK------ 55 G++AQ + L +A+N++N +T GF+ + +F++++ + N Q+ Sbjct: 10 GMSAQ---QLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGVPNQAGQEAVPEGA 66 Query: 56 ---ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + A+ L ++ GS +TG +LD A+ G +F + SP G I TR G F + Sbjct: 67 MLGLGVRAAAIRNLHRQ-GSLANTGNQLDLAVNGRGYFQITSPAGEIQYTRAGSFNKNNA 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--GKVI------ATMGLYSV 163 G LV+ G Y V D A I IPQ + E G++ K G+V T+ ++ Sbjct: 126 GQLVTMEG-YAV-DPA---ILIPQNTTQVTINESGQVFAKIDGQVALQNVGQLTLANFAN 180 Query: 164 D-----MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 D + G R + +P + P D+S +++G+LE SN + + E+ +I + Sbjct: 181 DSGLEPLGNGLYRETPASGAP-VVGNP-GDVSYGKLQQGYLEGSNVDPVKEITSLITAQR 238 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 F + +I DE ++ + IR Sbjct: 239 AFEMNSKVIQAADEMAGTVSKGIR 262 >gi|62317957|ref|YP_223810.1| flagellar hook protein FlgE [Brucella abortus bv. 1 str. 9-941] gi|83269934|ref|YP_419225.1| flagellar hook protein FlgE [Brucella melitensis biovar Abortus 2308] gi|189023208|ref|YP_001932949.1| flagellar hook protein FlgE [Brucella abortus S19] gi|225686885|ref|YP_002734857.1| flagellar hook protein FlgE [Brucella melitensis ATCC 23457] gi|254691611|ref|ZP_05154865.1| flagellar hook protein FlgE [Brucella abortus bv. 6 str. 870] gi|254731634|ref|ZP_05190212.1| flagellar hook protein FlgE [Brucella abortus bv. 4 str. 292] gi|256112177|ref|ZP_05453098.1| flagellar hook protein FlgE [Brucella melitensis bv. 3 str. Ether] gi|256256798|ref|ZP_05462334.1| flagellar hook protein FlgE [Brucella abortus bv. 9 str. C68] gi|256261978|ref|ZP_05464510.1| trypsin inhibitor Kunitz [Brucella melitensis bv. 2 str. 63/9] gi|260544142|ref|ZP_05819963.1| trypsin inhibitor Kunitz [Brucella abortus NCTC 8038] gi|260757242|ref|ZP_05869590.1| flagellar hook protein flgE [Brucella abortus bv. 6 str. 870] gi|260759393|ref|ZP_05871741.1| flagellar hook protein flgE [Brucella abortus bv. 4 str. 292] gi|260883046|ref|ZP_05894660.1| flagellar hook protein flgE [Brucella abortus bv. 9 str. C68] gi|265993603|ref|ZP_06106160.1| flagellar hook protein flgE [Brucella melitensis bv. 3 str. Ether] gi|297250151|ref|ZP_06933852.1| flagellar hook protein flgE [Brucella abortus bv. 5 str. B3196] gi|68845076|sp|O52070|FLGE_BRUAB RecName: Full=Flagellar hook protein flgE gi|12330680|gb|AAG52877.1| FlgE [Brucella abortus] gi|62198150|gb|AAX76449.1| FlgE, flagellar hook protein [Brucella abortus bv. 1 str. 9-941] gi|82940208|emb|CAJ13264.1| Flagellar basal body rod protein:Trypsin inhibitor Kunitz [Brucella melitensis biovar Abortus 2308] gi|189021782|gb|ACD74503.1| Trypsin inhibitor Kunitz [Brucella abortus S19] gi|225642990|gb|ACO02903.1| flagellar basal body FlaE domain protein [Brucella melitensis ATCC 23457] gi|260097413|gb|EEW81287.1| trypsin inhibitor Kunitz [Brucella abortus NCTC 8038] gi|260669711|gb|EEX56651.1| flagellar hook protein flgE [Brucella abortus bv. 4 str. 292] gi|260677350|gb|EEX64171.1| flagellar hook protein flgE [Brucella abortus bv. 6 str. 870] gi|260872574|gb|EEX79643.1| flagellar hook protein flgE [Brucella abortus bv. 9 str. C68] gi|262764473|gb|EEZ10505.1| flagellar hook protein flgE [Brucella melitensis bv. 3 str. Ether] gi|263091462|gb|EEZ15998.1| trypsin inhibitor Kunitz [Brucella melitensis bv. 2 str. 63/9] gi|297174020|gb|EFH33384.1| flagellar hook protein flgE [Brucella abortus bv. 5 str. B3196] gi|326411303|gb|ADZ68367.1| flagellar hook protein FlgE [Brucella melitensis M28] gi|326554592|gb|ADZ89231.1| flagellar hook protein FlgE [Brucella melitensis M5-90] Length = 396 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|83747652|ref|ZP_00944688.1| FlgG [Ralstonia solanacearum UW551] gi|207728348|ref|YP_002256742.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum MolK2] gi|207739735|ref|YP_002258128.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum IPO1609] gi|300696915|ref|YP_003747576.1| FlgG: flagellar basal-body rod protein [Ralstonia solanacearum CFBP2957] gi|83725704|gb|EAP72846.1| FlgG [Ralstonia solanacearum UW551] gi|206591594|emb|CAQ57206.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum MolK2] gi|206593117|emb|CAQ60023.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum IPO1609] gi|299073639|emb|CBJ53159.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum CFBP2957] Length = 260 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 39/254 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-----VAS 61 A + +L +++N++N +T GF+ + F +++ GA Q+ + + + Sbjct: 14 AQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGA---QSSQQTTLPSGMQIGT 70 Query: 62 GKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 G ++ E G+ TG D A+ G+ +F ++ P G + TRDG F++ G LV+ Sbjct: 71 GTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS-------QKGKVIATMGLYSVDM 165 +SG YPV +VP KD V G ++ Q I GL S+ Sbjct: 131 SSG-YPVQPAVTVPQNATSLTIAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGE 189 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTV-KRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + E SG + P +GV V + ++E SN N + EM MI TQ+ I Sbjct: 190 NL-YAETEASGTANLAAP----GANGVGVLNQNYVETSNVNVVEEMVNMIQ-TQRAYEIN 243 Query: 225 TLIDENEKSMLEAI 238 + + MLE + Sbjct: 244 SKAVQTSDQMLEKL 257 >gi|308071139|ref|YP_003872744.1| flagellar basal body rod protein [Paenibacillus polymyxa E681] gi|305860418|gb|ADM72206.1| Flagellar basal body rod protein [Paenibacillus polymyxa E681] Length = 294 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 13/204 (6%) Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 AI+++I+ ++ A+G+ + G FI+ E+ + E A+F + G + TRDG Sbjct: 94 AIQSNIN--VNDPATGQPMAFDQAGKFINANGEVTYRPE--AFFTVRDSNGNVRYTRDGH 149 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKVIAT-MGLYS 162 F+V G+L+S++G VLD PIQ+ V E+GE+ SQ + + T +G+ Sbjct: 150 FQVNGAGALLSSTGS-AVLDTNGNPIQLTGAVSELKVNERGELVDSQSNQTLGTTLGISV 208 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDL----SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +D +R N N + V+V++G+LE SN ++ M M+ + Sbjct: 209 IDRPYQLIREGNGNFRLNDTDGATARMMTANDAVSVRQGYLEVSNVDASQSMVDMMAALR 268 Query: 219 KFNSITTLIDENEKSMLEAIRNIA 242 + + +I +KS+ +A+ + Sbjct: 269 AYEANQKVIQFYDKSLDKAVNEVG 292 >gi|256059804|ref|ZP_05449999.1| flagellar hook protein FlgE [Brucella neotomae 5K33] gi|261323784|ref|ZP_05962981.1| flagellar hook protein flgE [Brucella neotomae 5K33] gi|261299764|gb|EEY03261.1| flagellar hook protein flgE [Brucella neotomae 5K33] Length = 396 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|17988503|ref|NP_541136.1| flagellar hook protein FlgE [Brucella melitensis bv. 1 str. 16M] gi|256042866|ref|ZP_05445812.1| flagellar hook protein FlgE [Brucella melitensis bv. 1 str. Rev.1] gi|260564103|ref|ZP_05834588.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. 16M] gi|265989301|ref|ZP_06101858.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. Rev.1] gi|38257707|sp|Q8YDL6|FLGE_BRUME RecName: Full=Flagellar hook protein flgE gi|17984295|gb|AAL53400.1| flagellar hook protein flge [Brucella melitensis bv. 1 str. 16M] gi|260151746|gb|EEW86839.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. 16M] gi|262999970|gb|EEZ12660.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. Rev.1] Length = 396 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|85712256|ref|ZP_01043307.1| Flagella basal body rod protein [Idiomarina baltica OS145] gi|85693883|gb|EAQ31830.1| Flagella basal body rod protein [Idiomarina baltica OS145] Length = 262 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 48/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDID------ 53 GL AQ ++ +S +++N++N TVGF+ + F +++ G D++ Sbjct: 11 GLDAQ---QRDISVISNNLANASTVGFKKSRAIFEDLLYQNINQPGGQSAQDVELPNGLM 67 Query: 54 --QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 VA+ K + G+ +T LD + G +F + P G + TR+G+F V + Sbjct: 68 LGAGTKVVATQKSHTQ---GNVQTTDNSLDVMINGKGFFQVLMPDGTLSYTRNGQFSVNE 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VIATMGLYSVD 164 +G+LV++ YP+ IQIP+ ++ ++GE++ Q G VI + L S Sbjct: 125 EGTLVTSGNGYPIEPQ----IQIPEDAISLSISQEGEVTVRQPGNAQNAVIGQLNLASFI 180 Query: 165 MSQGF------VRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 G + +E + + P E + GV V++G LE SN N E+ +I Sbjct: 181 NPAGLEPIGQNLYKETA-----VSGAPQESVPGVDGVGNVRQGMLETSNVNVTEELVNLI 235 Query: 215 HLTQKF 220 + + Sbjct: 236 EAQRGY 241 >gi|254695093|ref|ZP_05156921.1| flagellar hook protein FlgE [Brucella abortus bv. 3 str. Tulya] gi|261215444|ref|ZP_05929725.1| flagellar hook protein flgE [Brucella abortus bv. 3 str. Tulya] gi|260917051|gb|EEX83912.1| flagellar hook protein flgE [Brucella abortus bv. 3 str. Tulya] Length = 396 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|288940411|ref|YP_003442651.1| flagellar basal-body rod protein FlgG [Allochromatium vinosum DSM 180] gi|288895783|gb|ADC61619.1| flagellar basal-body rod protein FlgG [Allochromatium vinosum DSM 180] Length = 263 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 117/262 (44%), Gaps = 42/262 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + R+S V++N++N +T GF+ + F +++ GA Sbjct: 11 GLDAQ---QTRMSVVSNNLANVNTTGFKKGRAVFEDLIYHSCRQHGAQATQETQLPSGLT 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 I + VA+ K + G++I TG LD A+EG +F + P G I TRDG F++ Sbjct: 68 IGTGVRTVATQKLFAQ---GNYIQTGNSLDMAIEGQGFFQILMPGGEIGYTRDGSFQLNA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKV-IATMGLYSVD 164 DG +V ++G L A V IP E +G+ G +S Q G+V I + L + Sbjct: 125 DGEVVMSNGY--ALQPALV---IPADAESITIGKDGTVSIKQPNQVGEVQIGQIQLANFI 179 Query: 165 MSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G + RE + P E+ G V+ LE SN N E+ MI TQ Sbjct: 180 NPAGLQPIGENLFRETTASGAPQQSNPGENGFGSLVQCS-LETSNVNMAEELVNMIE-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + + + SML+ + N Sbjct: 238 RAYEVNSKAISAADSMLQFVNN 259 >gi|308050022|ref|YP_003913588.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] gi|307632212|gb|ADN76514.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] Length = 261 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 124/268 (46%), Gaps = 35/268 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAI---KN 50 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ GA+ +N Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVSFNDLFYQTQRQPGAMADQQN 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + + +++V G I+T LD A+ G +F +E P G TRDG+F Sbjct: 61 ELPSGLQLGTGVRITGTQKVFTTGDIITTNQPLDLAIMGQGFFQVEQPNGDFAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK------GKVIATMG 159 DG +V++ G M VP ++IP+ VG G ++ + + + + Sbjct: 121 YRNADGLVVTSEG------MPLVPAVEIPEDALTVTVGSDGIVTAQIAGDAVPQELGQIT 174 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L + G + RE + I P + G +K+G LE +N N + EM +M Sbjct: 175 LANFTNPAGLEAFGNNLYRETAASGVAIEGIPGDAAIG-QLKQGTLEGANVNVVEEMVEM 233 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I TQ+ + + + ML+ + + Sbjct: 234 IS-TQRAYEMNAKVVSSTDDMLKYLNQV 260 >gi|187778771|ref|ZP_02995244.1| hypothetical protein CLOSPO_02366 [Clostridium sporogenes ATCC 15579] gi|187772396|gb|EDU36198.1| hypothetical protein CLOSPO_02366 [Clostridium sporogenes ATCC 15579] Length = 255 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 38/258 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S ++ ++LE + T++ N+SN TVG+++ + F + + + D+K Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 56 ISFVASGKEYLSK--EVGSFIS------TGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I V G +K EV + + TG DFALEG +F +E+ TRDG F Sbjct: 61 IKNVIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK-------GEISQKGKVIATMGL 160 V G LV+ SG Y V+ M ++ IF VG K G IS G + + Sbjct: 121 VDTRGYLVNDSG-YNVMGMNR---NTGAREAIF-VGNKTIGTDASGNISLNGVPSYSFQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + ++ N P ++++G+ V++ LE SN N EM M+ + F Sbjct: 176 ADFNDYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSF 230 Query: 221 NSITTLIDENEKSMLEAI 238 E + M++AI Sbjct: 231 --------ETNQKMVQAI 240 >gi|237817502|ref|ZP_04596493.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] gi|237787337|gb|EEP61554.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] Length = 456 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 70 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 129 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 130 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 178 Query: 117 ASGKY 121 ++G Y Sbjct: 179 SAGYY 183 >gi|254720773|ref|ZP_05182584.1| flagellar hook protein FlgE [Brucella sp. 83/13] gi|265985831|ref|ZP_06098566.1| flagellar hook protein flgE [Brucella sp. 83/13] gi|306840136|ref|ZP_07472921.1| flagellar hook protein FlgE [Brucella sp. NF 2653] gi|264664423|gb|EEZ34684.1| flagellar hook protein flgE [Brucella sp. 83/13] gi|306404781|gb|EFM61075.1| flagellar hook protein FlgE [Brucella sp. NF 2653] Length = 396 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|319764541|ref|YP_004128478.1| flagellar basal-body rod protein flgg [Alicycliphilus denitrificans BC] gi|317119102|gb|ADV01591.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans BC] Length = 260 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQ------ 54 G++AQ + +L ++ N++N T GF+ F ++ VGA + +Q Sbjct: 11 GMSAQ---QTQLDVISHNLANVSTTGFKRNSAVFEDLIYQNLRQVGAQTTEENQLPTGLH 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + VA+ + + GS + LD A+ G+ +F ++ P G I TRDG F++ Sbjct: 68 LGLGVRTVATSRHFTQ---GSLQQSSNSLDVAINGNGFFEVQLPDGTIGYTRDGSFQLDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----I 155 G +V+ SG PV + I +PQ ++ E G +S Q G++ I Sbjct: 125 QGRMVT-SGGLPVAN----GITVPQGATSISISETGVVSATIAGNAQPQQLGQLAMSSFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL V + + +E++ P P + GV +K+GFLE SN N + E+ MI Sbjct: 180 NAAGLQPVGQN---MYKESAASGPPQQGQPGTNGLGV-IKQGFLETSNVNVVEELVTMIQ 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|158321570|ref|YP_001514077.1| flagellar basal body rod protein [Alkaliphilus oremlandii OhILAs] gi|158141769|gb|ABW20081.1| flagellar basal body rod protein [Alkaliphilus oremlandii OhILAs] Length = 357 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 24/199 (12%) Query: 56 ISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 I + GK + V G+ TG+ L+FA++G +F +++P G + TR+G F + + Sbjct: 169 IGTINGGKRFERTHVNFLQGTLEETGSPLNFAIDGTGFFRVQTPEGPMYTRNGSFSLGPN 228 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM------GLYSVDM 165 G+LV+A G Y +L PI + ++ F V E G++ G+++ + L S+D Sbjct: 229 GNLVTAEG-YLLLGQNG-PINVGNQE--FQVKENGQVIVAGQLVNQISMTDISNLNSLDK 284 Query: 166 --SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 ++ RE + TP V +GFLE SN +++ EM +MI + + + Sbjct: 285 FGQSYYIVRE----GLEVEETPFTG----EVLQGFLEGSNISTIDEMVKMISTMRSYEAS 336 Query: 224 TTLIDENEKSMLEAIRNIA 242 + ++ ++ + +A+ +I Sbjct: 337 SKMVKAYDEMLQKAVNDIG 355 >gi|2832235|gb|AAC01569.1| flagellar hook [Brucella abortus] Length = 396 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|254473478|ref|ZP_05086875.1| flagellar hook protein FlgE [Pseudovibrio sp. JE062] gi|211957594|gb|EEA92797.1| flagellar hook protein FlgE [Pseudovibrio sp. JE062] Length = 397 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 N ++ A +LSTVADN+SN +TVG++ K FS +VG+ + V + Sbjct: 8 NTSVSGMNAQSNKLSTVADNISNANTVGYKRYKTAFSSLVGS-GGTSGHESGIVNTTVVQ 66 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 ++ G+F T D A+ G +F ++ +G TR G F + +G +V+ SG Y +L Sbjct: 67 TVRQQGAFNFTSRGTDLAINGKGFFQVQDSQGSTYYTRAGDFVLDKNGQMVN-SGGYKLL 125 Query: 125 DMASVPIQIPQKDEIFNVGEKGEI 148 P+ + ++ +GE+ Sbjct: 126 SAGGAPVTVDLNTPVWQASSEGEL 149 >gi|77457729|ref|YP_347234.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens Pf0-1] gi|77381732|gb|ABA73245.1| flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1] Length = 261 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+T+++N++N T GF+ + +F +++ IK Sbjct: 11 GLSAQ---DTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A++G +F + P G TRDG F + Sbjct: 68 VGTGVRIVGTQKNFTA---GSLQTTEQPLDMAIDGRGFFQILQPDGTTSYTRDGTFHLDS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 +G +V+ASG L+ A I IP + F VG G +S Q I Sbjct: 125 NGQIVNASGF--ALEPA---IVIPNNAQTFTVGRDGTVSITVAGNPAAQVIGNLQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL +V + F+ SG +P + TP + G T++ LE SN +++ EM MI Sbjct: 180 NPAGLQAVG-NNLFLETAASG-APQV-GTPGLNGFGTTLQN-TLETSNVSTVEEMVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|330818583|ref|YP_004362288.1| flagellar basal-body rod protein FlgG [Burkholderia gladioli BSR3] gi|327370976|gb|AEA62332.1| flagellar basal-body rod protein FlgG [Burkholderia gladioli BSR3] Length = 262 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 120/276 (43%), Gaps = 47/276 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LT 101 Q + VA+ + Y G+ TG D A++G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GALTQTGNSRDIAIDGSGFFQVLMPDGTTAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKV----I 155 RDG F + G LV++SG Y VL I +PQ + +G G ++Q G I Sbjct: 116 RDGSFHPNNQGQLVTSSG-YQVLPA----ITVPQNAQSLTIGTDGVVTVTQPGSTNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 M + + +G F +SG+ PN+ TP + +G ++ +G++E SN N + Sbjct: 171 GAMQIATFINPEGLQALGQNLFAETTSSGV-PNV-TTPGLNGAG-SLNQGYVESSNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|149908757|ref|ZP_01897418.1| putative flagellar basal-body rod protein [Moritella sp. PE36] gi|149808299|gb|EDM68238.1| putative flagellar basal-body rod protein [Moritella sp. PE36] Length = 261 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 24/159 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 GLAAQ + ++S +A+N++N +T GF+ +V FS++ IK N+I + Sbjct: 11 GLAAQ---DVKMSIIANNLANVNTTGFKKDRVAFSDLFYDIKRQPGALADQNNEIPTGVQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +++V GSF TG ELD A+ G +F +E G I TR+G+F + D Sbjct: 68 VGNGVRVTGTQKVFTPGSFADTGQELDMAIIGKGFFQVEQVSGEIAYTRNGQFTLNSDSQ 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK 151 +V++ G + VP IQIP +G G I+ + Sbjct: 128 IVNSDG------LPLVPSIQIPADATSITIGSDGTITAQ 160 >gi|327193059|gb|EGE59971.1| flagellar hook protein [Rhizobium etli CNPAF512] Length = 434 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 22/117 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTV+DN++N +T G++ + FS +V G ++ + Q +S Sbjct: 16 AQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVS------ 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ GD +F ++ P G +LTR G F+ D+G+LV+A+G Sbjct: 70 -----DQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAAG 121 >gi|225159023|ref|ZP_03725333.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] gi|224802402|gb|EEG20664.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] Length = 261 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 9/101 (8%) Query: 71 GSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 GS +TG D A+ G+ +F ++ P +TRDG FK D+G LV+ASG VLD AS Sbjct: 79 GSISTTGVSTDLAISGEGYFIVQDPNSGAQYITRDGSFKFDDNGYLVNASG-LRVLDSAS 137 Query: 129 VPIQIP----QKDEIFNVGEKGEISQKG--KVIATMGLYSV 163 PIQIP Q I + G + G +AT+GL V Sbjct: 138 APIQIPTTGVQSKSISSNGAVSYVDTAGVTHTVATVGLAQV 178 >gi|294852968|ref|ZP_06793640.1| flagellar hook protein FlgE [Brucella sp. NVSL 07-0026] gi|294818623|gb|EFG35623.1| flagellar hook protein FlgE [Brucella sp. NVSL 07-0026] Length = 396 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|291562041|emb|CBL40857.1| fagellar hook-basal body proteins [butyrate-producing bacterium SS3/4] Length = 265 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 37/231 (16%) Query: 13 LALEQRLSTVADNMSNTDTVGFR-------TIKVKFSEVVGAIKNDIDQKISFVASGKE- 64 L + L+T+++NM N T G++ T K + G + +++ V+ K Sbjct: 13 LTQSRNLNTISNNMVNIQTPGYKNETMVSSTFKEEMLYRTGQYSKENPTQLATVSKIKTA 72 Query: 65 ---YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV-SASGK 120 Y + + G T DFAL G+ +F +++ +GI TR+G F V DG LV + +G+ Sbjct: 73 KQVYTNYDQGGLEQTDGIYDFALNGNGFFCIQTSQGIRYTRNGSFSVDKDGYLVLNQAGR 132 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIATMGLYS----VDM- 165 VL+ P+QI K+E F V KG I+ + G T+ Y VD Sbjct: 133 --VLNKEGQPVQI--KNENFTVDSKGHITAAITNQSDGEESGSQEVTIEDYGTLKVVDFP 188 Query: 166 SQGFVRRENSGI--SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 QG + E++G+ + TP + TV+ LE SN + + +M M+ Sbjct: 189 DQGQLHAEDNGLFSTAQAETTPAD----TTVQWKMLEKSNVDMVEQMTAMM 235 >gi|220930463|ref|YP_002507372.1| hypothetical protein Ccel_3100 [Clostridium cellulolyticum H10] gi|220000791|gb|ACL77392.1| protein of unknown function DUF1078 domain protein [Clostridium cellulolyticum H10] Length = 270 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 129/264 (48%), Gaps = 36/264 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISFVAS 61 G+ AQ + + +++N++N +T G++ + +F +++ + ND + ++ Sbjct: 11 GMKAQ---QFNVDVISNNLANVNTTGYKKERAEFKDLLYQTMDRAYVLNDAGKPVNLQVG 67 Query: 62 GKEYLSKEVGSFIS-----TGTELDFALEGDAWFALESPRGII-LTRDGRFK--VTDDG- 112 +S V +F + T + LDFA++G+ +F + P+G + TRDG FK +T+DG Sbjct: 68 HGTVVSSTVRNFENGTPEQTSSNLDFAIDGEGFFTIMGPQGTVQYTRDGSFKLSITEDGM 127 Query: 113 -SLVSASGKYPVLDMASVPIQIPQKDEI--FNVGEKGEISQKGK------VIATMGL--- 160 L +A G Y VLD + I + I +V +GE+S K + T+G+ Sbjct: 128 KKLTTADG-YAVLDNSGEEILFDPEVNISELSVSPRGEMSYKDAEGVSVPMDQTIGMVIF 186 Query: 161 ---YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 Y+++ + NS + + E+ + +K+GFLE SN + EM ++I + Sbjct: 187 PNKYALEAVGNNLYSSNSATGEPVQVSEDENAKSI-MKQGFLESSNVQVVDEMVKLI-VA 244 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ +++ ++ ML+ N+ Sbjct: 245 QRAYEVSSKAIQSSDDMLQIANNL 268 >gi|107023952|ref|YP_622279.1| flagellar basal body rod protein FlgF [Burkholderia cenocepacia AU 1054] gi|116691039|ref|YP_836662.1| flagellar basal body rod protein FlgF [Burkholderia cenocepacia HI2424] gi|170734373|ref|YP_001766320.1| flagellar basal body rod protein FlgF [Burkholderia cenocepacia MC0-3] gi|254246966|ref|ZP_04940287.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|105894141|gb|ABF77306.1| Flagellar basal-body rod FlgF [Burkholderia cenocepacia AU 1054] gi|116649128|gb|ABK09769.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia HI2424] gi|124871742|gb|EAY63458.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|169817615|gb|ACA92198.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia MC0-3] Length = 252 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 28/242 (11%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVAS--GK 63 A +L+Q+ + VA+N++N T GFR + V G+ + + +AS G Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSNIDPTTTRTYVLASTPGA 70 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 +Y G TG LD A++G W ++++ G TR G V ++G LV+AS P Sbjct: 71 DYAP---GPITRTGNPLDVAVQGPGWLSVQTADGSEAYTRAGNLHVDENGQLVNAS-NLP 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRREN 174 V+ PI +P E+ +G+ G +S ++ M L + D + + R N Sbjct: 127 VIGNGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDAAT--LTRGN 182 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENE 231 G+ P + V V LE SN N + M MI + F + LI D+NE Sbjct: 183 DGLFRTADGNPADVDPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNE 242 Query: 232 KS 233 ++ Sbjct: 243 QT 244 >gi|77165836|ref|YP_344361.1| hypothetical protein Noc_2373 [Nitrosococcus oceani ATCC 19707] gi|254434083|ref|ZP_05047591.1| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27] gi|76884150|gb|ABA58831.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090416|gb|EDZ67687.1| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27] Length = 261 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GA--IKNDIDQKISF 58 GL AQ + R++T+++N++N +T GF+ + F +++ GA +N + Sbjct: 11 GLDAQ---QTRMATISNNLANVNTTGFKRDRAVFEDLLYQTVRQPGAQSSQNTLLPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G ++ E G TG LD A++G +F + P G + TRDG F++ +G Sbjct: 68 LGTGVRTVATEKLFTQGGLTQTGNSLDMAIQGRGFFQILMPDGSLAYTRDGTFQIDANGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATM 158 LV++SG YPV I IP+ VG G +S Q G + I Sbjct: 128 LVTSSG-YPV----QPGITIPESALSVTVGSDGIVSVLMAGDGTPIQAGNLQLADFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 GL + F +SG++ T + L+G+ T+ +G LE +N N + E+ MI Sbjct: 183 GLQPTGNNL-FKETASSGVA----QTGIPGLNGIGTLVQGALEGANVNVVEELVNMIETQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|15596279|ref|NP_249773.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PAO1] gi|107100527|ref|ZP_01364445.1| hypothetical protein PaerPA_01001552 [Pseudomonas aeruginosa PACS2] gi|116049011|ref|YP_792187.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa UCBPP-PA14] gi|152984786|ref|YP_001349648.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PA7] gi|218892954|ref|YP_002441823.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa LESB58] gi|254234218|ref|ZP_04927541.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa C3719] gi|254239440|ref|ZP_04932762.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 2192] gi|296390554|ref|ZP_06880029.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PAb1] gi|313106037|ref|ZP_07792296.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 39016] gi|9946998|gb|AAG04471.1|AE004539_13 flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PAO1] gi|115584232|gb|ABJ10247.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa UCBPP-PA14] gi|126166149|gb|EAZ51660.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa C3719] gi|126192818|gb|EAZ56881.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 2192] gi|150959944|gb|ABR81969.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PA7] gi|218773182|emb|CAW28994.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa LESB58] gi|310878798|gb|EFQ37392.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 39016] Length = 261 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+T+++N++N T GF+ + +F +++ I+ Sbjct: 11 GLSAQ---DMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 LGTGVRVVGTQKIFTP---GSLQTTEQPLDMAVNGRGFFQVLLPDGTVSYTRDGSFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+++G L+ A I +P + + F VG+ G +S Q I Sbjct: 125 DGQIVTSNGF--ALEPA---IVVPNETQTFTVGQDGTVSVTTTGNAQPQVIGNIQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ + F+ +SG +P + L L TV + LE+SN N + E+ MI Sbjct: 180 NPAGLQAIGNNL-FLETGSSG-APQVGTPGLNGLG--TVAQNTLENSNVNVVEELVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|332298513|ref|YP_004440435.1| flagellar basal-body rod protein FlgF [Treponema brennaborense DSM 12168] gi|332181616|gb|AEE17304.1| flagellar basal-body rod protein FlgF [Treponema brennaborense DSM 12168] Length = 265 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 43/269 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKND------ 51 M + IG + A + RL +++N++N DT ++ T+ F E++ ND Sbjct: 1 MVRGWYIGSSGMNAQQNRLDAISNNLANADTTAYKRDVTVSKSFPELLMRRMNDDGVYRT 60 Query: 52 ---------IDQKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 I KI V + + Y E GSF T ++ D AL G+ +FA+++P G T Sbjct: 61 PFGSADAAPIVGKIGLGVETNELYTDFEQGSFKQTSSKADMALSGEGFFAVQTPAGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKVIATMG 159 R+G F + +G L + G YPVL I D+ F V G I + ++I Sbjct: 121 RNGNFMIGKEGILETKEG-YPVLGENGY---IRVNDDSFTVNPDGMIYSADDMELIDRFK 176 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV----------KRGFLEDSNANSMYE 209 + D ++ ++++ S + N D+SG +G+ E SN N + E Sbjct: 177 VVRFD-NERYLQKMGSSLYKNT------DISGEAYIAEGKERPAFIQGYTETSNVNVVNE 229 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 M MI + + + + I + E +M+ + Sbjct: 230 MVSMIEVNRAYEANQKTI-QTEDTMMSTL 257 >gi|170722889|ref|YP_001750577.1| flagellar basal body rod protein FlgG [Pseudomonas putida W619] gi|169760892|gb|ACA74208.1| flagellar basal-body rod protein FlgG [Pseudomonas putida W619] Length = 261 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+ +++N++N T GF+ + +F +++ IK Sbjct: 11 GLSAQ---DTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 VGTGVRIVGTQKNF---QTGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+A+G L+ A V +P + F VG+ G +S Q I Sbjct: 125 DGQIVTANGF--ALEPAVV---VPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ F+ SG +P + TP + G T+++ LE+SN +++ E+ MI Sbjct: 180 NPAGLQAIG-DNLFLETAASG-APQV-GTPGLNGFGTTLQQ-TLENSNVSTVEELVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|303328380|ref|ZP_07358818.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] gi|302861710|gb|EFL84646.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] Length = 261 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 25/256 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDID 53 M S G +A + + +++N++N +T GF+ + +F + + G+I + Sbjct: 1 MMRSLYTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDLMYQTMKIAGSITEGDN 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + G V G F +TG LD A+EGD +F ++ ++ TR G FK Sbjct: 61 RLPVGIQVGMGVRPTAVHKFFTQGDFQNTGNALDVAVEGDGFFQVDVNGELMYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI--ATMGLYSVDM 165 + DG++V+A+G Y + +VP + + I + G + +G+ I A + LY+ Sbjct: 121 LNQDGTVVTANG-YILQPEFAVPAET-KNISISSTGHIAALDSEGQEIAGAEIPLYTFIN 178 Query: 166 SQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G R + +P P D G T+ +GFLE SN + EM MI + Q+ Sbjct: 179 PAGLDARGRNLYTPTEASGAETEGVPGTDNVG-TLAQGFLEMSNVEVVDEMVNMI-VGQR 236 Query: 220 FNSITTLIDENEKSML 235 + + + SML Sbjct: 237 AYEVNSKAIQTSDSML 252 >gi|148546709|ref|YP_001266811.1| flagellar basal body rod protein FlgG [Pseudomonas putida F1] gi|148510767|gb|ABQ77627.1| flagellar basal-body rod protein FlgG [Pseudomonas putida F1] Length = 261 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 49/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+ +++N++N T GF+ + +F +++ IK Sbjct: 11 GLSAQ---DTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 VGTGVRIVGTQKNF---QTGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---------------QKGKV 154 DG +V+A G +A P I +P + F VG+ G +S Q Sbjct: 125 DGQIVNADG------LALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 I GL ++ + F+ SG +P + TP + G T+++ LE+SN +++ E+ MI Sbjct: 179 INPAGLQAMG-NNLFLETAASG-APQV-GTPGLNGFGTTLQQ-TLENSNVSTVEELVNMI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 TTQRAY 240 >gi|313682110|ref|YP_004059848.1| flagellar basal-body rod protein flgg [Sulfuricurvum kujiense DSM 16994] gi|313154970|gb|ADR33648.1| flagellar basal-body rod protein FlgG [Sulfuricurvum kujiense DSM 16994] Length = 262 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 125/257 (48%), Gaps = 40/257 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S L+++ ++ T A+N++N +T+G++ + +F++++ G +D Sbjct: 1 MMQSLYTSSTGMLSMQTQIDTTANNIANVNTMGYKKSRAEFADLMYKVMTYAGTSTSDTT 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + + + G + GS T LD A+ G +F LE P G + +R+G F Sbjct: 61 KSPTGIEVGLGVRPTSINKIFTEGSLKQTDNSLDLAITGKGFFKLELPNGTEVYSRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKG--EISQKGKVIATM----- 158 K+ ++G++V++ G Y + VP + IP+ ++G G ++Q G+ AT Sbjct: 121 KIDENGTIVNSDG-YKL-----VPEVVIPEDATNISIGTDGIVSVTQSGQAQATQVGQIS 174 Query: 159 --------GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 GL+++ FV ++SG P I TP E+ G +++GF+E SN + E+ Sbjct: 175 LTSFINPAGLHAMG-DNLFVETDSSG-QP-IEGTPGENGIG-NIRQGFVELSNVQLVVEL 230 Query: 211 GQMIHLTQKFNSITTLI 227 +I + +++ + +I Sbjct: 231 TDLITGQRAYDANSKVI 247 >gi|146277708|ref|YP_001167867.1| flagellar basal body FlaE domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555949|gb|ABP70562.1| flagellar basal body FlaE domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 423 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 26/155 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S N L+ A + ++ + N++N T+GFR + +F++V + I + + V SG Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSIAR--TAVGSGV 59 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDG 112 + L + GS ++TG LD A+EG +FA E G I TR G F + D G Sbjct: 60 QTLRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNDKG 119 Query: 113 SLVSASGK----YPV---------LDMASVPIQIP 134 V+ASG+ +PV + +VP+ IP Sbjct: 120 VAVNASGQKLLAWPVSVEGDALSQVPGTAVPLTIP 154 >gi|109899401|ref|YP_662656.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas atlantica T6c] gi|109701682|gb|ABG41602.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas atlantica T6c] Length = 247 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 27/228 (11%) Query: 9 LAAQLALEQRLSTV--ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +AA A + L T A+N++NT T GFR +++ + + A + ++ F + Sbjct: 7 IAASGAKQDLLGTAVRANNLANTQTTGFRA-QLEQARSMPAFGEGLPTRV-FSMTENPAN 64 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 + E G+ I T ELD A++G+ W ++ G +R+G +++ DG L +SG + + Sbjct: 65 NFEGGAMIQTERELDVAIQGEGWLSVLDANGAEAYSRNGSLQISADGQLQDSSGNSILGE 124 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMG--------LYSVDMSQGFVRR 172 V + IP + N+ G IS + + V+ +G L ++D + R Sbjct: 125 FGPVFLPIPLSN--INIAGDGTISVRPQGAPETVLEEVGRLKLVNPALDNIDRGNDGLFR 182 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G PT V+++ G LE SN N + EM MI L + + Sbjct: 183 QKDGELAQFDPT-------VSIRNGMLEGSNVNPVEEMVDMISLQRHY 223 >gi|307546966|ref|YP_003899445.1| flagellar basal body rod protein FlgG [Halomonas elongata DSM 2581] gi|307218990|emb|CBV44260.1| flagellar basal body rod protein FlgG [Halomonas elongata DSM 2581] Length = 260 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 41/248 (16%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF---VASGKEYLS 67 +L +++N++N +T GF+ + F +++ GA +N++ ++ V +G ++ Sbjct: 18 KLDVISNNLANVNTNGFKRSRAVFEDLLYQNLRQPGA-QNNVQNRLPSGMQVGTGVRPVA 76 Query: 68 KE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 E G +TG D A+ G +F + P G TRDG F++ ++G +V+A+G YP Sbjct: 77 TERLHTQGGLENTGNSRDLAINGKGFFQVRMPDGTTAYTRDGSFQLDENGQMVTANG-YP 135 Query: 123 VLDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-----IATMGLYSVDMSQ 167 L+ A I IPQ ++GE G E ++ G++ + GL S+ Sbjct: 136 -LEPA---IIIPQNALSVSIGEDGIVSITEPGSSESNEVGQISVSSFVNPTGLESIG--- 188 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G + RE + P P + +G + +G++E SN N + EM MI TQ+ I + Sbjct: 189 GNLYRETTASGPRNEGIPGMNGAG-RLSQGYVETSNVNVVEEMVGMIQ-TQRAYEINSKA 246 Query: 228 DENEKSML 235 + ML Sbjct: 247 VQTSDEML 254 >gi|296103609|ref|YP_003613755.1| Flagellar basal-body rod protein, FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058068|gb|ADF62806.1| Flagellar basal-body rod protein, FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 260 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAI---KNDIDQKIS 57 GL AQ + + +++N++N +T GF+ + F +++ GA +N + + Sbjct: 11 GLEAQ---QLNMDVISNNLANVNTNGFKRQRAVFQDLLYQNMRQPGAQSTEQNTLPSGLQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + ++ V G TG E D A+EG+ +F ++ P G TRDG F + DG Sbjct: 68 LGTGVRPVSTQRVHTQGGMNQTGDEYDVAIEGEGFFQVQMPDGSTAYTRDGHFSKSPDGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIATM----- 158 LV+A G YP+ I IPQ N+G G +S Q G++ T Sbjct: 128 LVNAEG-YPI----QPGIVIPQDATKLNIGSDGIVSVKVPGQAEEQQIGQLTLTTFVNNA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL S+ + + S +PN +E S T+K+ ++E SN N E+ MI + + Sbjct: 183 GLESIGGN--LYKETQSSGAPNELNPGME--SAGTLKQSYVEISNVNVAEELVTMIQVQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|83312594|ref|YP_422858.1| flagellar basal body rod protein FlgG [Magnetospirillum magneticum AMB-1] gi|82947435|dbj|BAE52299.1| Flagellar basal body rod protein [Magnetospirillum magneticum AMB-1] Length = 261 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 123/265 (46%), Gaps = 34/265 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 S NI LA + + +++N++N +T F + +F+++ VG+ +D Sbjct: 3 SLNIAATGMLAQQTNVEVISNNIANMNTTAFTRRRPEFADLLYQNLRRVGSQSSDTG--- 59 Query: 57 SFVASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 + V +G + Y E GS ST LD A++G +F ++ P G TRDG Sbjct: 60 TIVPTGVQLGLGVKTTAVYRITEQGSVQSTDNTLDMAIQGKGYFQIKLPSGETAYTRDGS 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 F+++ +G++V+ G Y V+ ++P + + ++ V + G++ + K T+ Sbjct: 120 FQLSPEGTIVTHEG-YQVIPQVTIPSDAVGVTVDSTGQVI-VKQDGQVQSQIKGQLTLAT 177 Query: 161 YSVDMS----QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 ++ D G + E + TP + G T+ +GFLE SN N + E+ +I Sbjct: 178 FANDAGLEARGGNLFMETPASGQPVVQTPGKPGFG-TILQGFLETSNVNVVAEVTNLIGA 236 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ ML I + Sbjct: 237 QRAYEMNSKVIQASDE-MLSTINQM 260 >gi|253996318|ref|YP_003048382.1| flagellar basal-body rod protein FlgF [Methylotenera mobilis JLW8] gi|253982997|gb|ACT47855.1| flagellar basal-body rod protein FlgF [Methylotenera mobilis JLW8] Length = 246 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 23/239 (9%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV---ASGKEYLS 67 A+ LE++ +T + N++N + GF++ ++ V + + + +FV SG ++ S Sbjct: 12 AKHILEKQ-ATTSHNLANATSTGFKS-QIDSFRAVPVLSTGLPTR-AFVVDSTSGSDFNS 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G+ ST LD A++GD W A++ G TR+G K + +G L +A+G + D Sbjct: 69 ---GAIQSTNRNLDIAVKGDGWLAVQRADGSEAYTRNGSLKTSPNGLLQTANGLTIMGDG 125 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRRENSGIS 178 PI IP D ++G+ G +S +I + L V+ Q + R + G+ Sbjct: 126 G--PITIP-PDVAVSIGKDGTVSTVNNLTLPGPSNIIGRIKL--VNPPQANLVRADDGLF 180 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P + V+V +G LE SN N + M MI L+++F + LI E + +A Sbjct: 181 TTKDGNPATADANVSVVQGALESSNVNVVDAMVTMISLSRQFETQMKLIQTAENNANKA 239 >gi|186477699|ref|YP_001859169.1| flagellar basal body rod protein FlgG [Burkholderia phymatum STM815] gi|184194158|gb|ACC72123.1| flagellar basal-body rod protein FlgG [Burkholderia phymatum STM815] Length = 262 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ T+++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQAQMDTISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDM 165 + G LV++SG Y VL I IPQ +G G +S AT + S+ + Sbjct: 121 QTNSQGQLVTSSG-YQVLPA----ITIPQNATSLTIGSDGVVSVTTAGSTATTQIGSLQI 175 Query: 166 ----------SQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 ++G F +SG +PN+ TP + +G T+ +G++E SN N + E+ Sbjct: 176 ATFINPTGLDAKGENLFAETTSSG-TPNV-ATPGLNGAG-TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|83717394|ref|YP_438390.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis E264] gi|167614838|ref|ZP_02383473.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis Bt4] gi|257141423|ref|ZP_05589685.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis E264] gi|83651219|gb|ABC35283.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis E264] Length = 241 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 12/207 (5%) Query: 19 LSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 ++ A+NM+N T GFR +++ S+ V D +S A+ L+ E G TG Sbjct: 19 IAVHANNMANAQTDGFRAELEMAESQAVRGYGYDSRHLLSPRANA---LNGEAGVVADTG 75 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ELD A+ G +F +++ G TR G F++ DG+L + +G+ PV+ PI +P+ Sbjct: 76 RELDAAINGSGYFTVDTQGGEAYTRAGNFEIDADGAL-TVNGR-PVIGEGG-PIVLPEFT 132 Query: 138 EIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + +GE G IS +V A L VD + + +G+ PL V Sbjct: 133 SL-RIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAGLLVARDGQPLPASDEVK 191 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKF 220 V G LE SN + + EM + L + F Sbjct: 192 VLGGHLERSNVSPVEEMIATMSLNRAF 218 >gi|302872713|ref|YP_003841349.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] gi|302575572|gb|ADL43363.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] Length = 255 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 24/251 (9%) Query: 10 AAQLALEQRLSTV-ADNMSNTDTVGFR----TIKVKFSEVVGAIKNDI---DQKISFVAS 61 A+ + L Q+L + A+N++N +T GF+ ++ + +V I + + D I +++ Sbjct: 9 ASGMILNQKLMDITANNVANVNTTGFKRDVAQVESFRNMLVYRIYDKVSSPDNAIGYMSL 68 Query: 62 GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESP-----RGIILTRDGRFKVTDD 111 G + +S+ V G +I T L+ A+ G+ +FA+E P + I+ TR+G F + Sbjct: 69 GAD-VSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAIEVPGNQGAQQILYTRNGAFTLNSQ 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G LV+ G Y + + I Q + E+G + Q G+ + + + Q + Sbjct: 128 GELVTLDGFYVLGQNGRI---ILQNGGQVRIDEQGNVYQDGRFVDRLRVVDFQDKQLLRK 184 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N+ + + SG V+ G+LE SN NS+ EM MI++ + + + + Sbjct: 185 VGNNLFEADATAQQIP-FSGRIVQ-GYLEGSNVNSVQEMVNMINVLRAYEANQKAFTIQD 242 Query: 232 KSMLEAIRNIA 242 +++ +A+ IA Sbjct: 243 ETLQKAVSEIA 253 >gi|170750088|ref|YP_001756348.1| hypothetical protein Mrad2831_3689 [Methylobacterium radiotolerans JCM 2831] gi|170656610|gb|ACB25665.1| protein of unknown function DUF1078 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 263 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 23/241 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ ++ N++NT TVGF++ + +F++++ + + S + L+ + G+ STG Sbjct: 21 LNNISGNIANTQTVGFKSTETRFADMLAETGDSTQLAGGVLPSTRNSLNIQ-GTMQSTGV 79 Query: 79 ELDFALEGDAWFALESPRGII----------LTRDGRFKVTDDGSLVSASGKYPVLD-MA 127 + A+ G+ +F ++ G TR G F G L + +G Y A Sbjct: 80 STNLAISGNGYFIVKKNTGTPDSPAFGGDTGYTRRGDFAPDASGYLSNGAGYYLFAGPSA 139 Query: 128 SVPIQIPQKDEIFN---VGEKGEISQKGKVIATMGLYSVDMSQGFVRREN-------SGI 177 + P+Q+P V G ++ +T+ L ++ ++Q F ++N + + Sbjct: 140 TTPVQVPTGASTLASLAVSPAGTLTGTAADGSTLALGTLQLAQ-FGMQDNLASLDGGTYV 198 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + TP L+G TV G +E SNA + +MI Q + + T ++ ++ + +A Sbjct: 199 ATGQSGTPSYGLNGATVTAGSVEQSNAGISDQFSKMIETQQAYTANTKVMSTTDQMLQDA 258 Query: 238 I 238 I Sbjct: 259 I 259 >gi|52785608|ref|YP_091437.1| flagellar basal body rod protein FlgG [Bacillus licheniformis ATCC 14580] gi|163119437|ref|YP_079022.2| flagellar basal body rod protein FlgG [Bacillus licheniformis ATCC 14580] gi|319645990|ref|ZP_08000220.1| FlgE protein [Bacillus sp. BT1B_CT2] gi|52348110|gb|AAU40744.1| FlgE [Bacillus licheniformis ATCC 14580] gi|145902944|gb|AAU23384.2| flagellar hook protein [Bacillus licheniformis ATCC 14580] gi|317391740|gb|EFV72537.1| FlgE protein [Bacillus sp. BT1B_CT2] Length = 263 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 27/168 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L VA+N+SN +T G++ +V F ++V Q++S + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVVANNISNINTAGYKKSRVTFKDIV-------SQQLSGAS 53 Query: 61 S---------GKEY-LSKEVGSF---------ISTGTELDFALEGDAWFALESPRGIILT 101 S G++ L +GS +TG +LD + GD +F + S + T Sbjct: 54 SSTANRGSVNGQQVGLGATIGSIDIIHTNAAPSTTGRQLDMTITGDGYFRVGSGDEVYYT 113 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 R G F +D+G LV+ G + VL + I IPQ + F++ G +S Sbjct: 114 RSGNFYRSDEGDLVTVDGLF-VLTANNGRINIPQDAQSFSIAPDGTVS 160 >gi|89068731|ref|ZP_01156117.1| hypothetical protein OG2516_06821 [Oceanicola granulosus HTCC2516] gi|89045694|gb|EAR51756.1| hypothetical protein OG2516_06821 [Oceanicola granulosus HTCC2516] Length = 261 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 37/260 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND----- 51 + I LA + + +++N++N +T GF++ + F +++ GA+ + Sbjct: 3 ALGIATTGMLAQQTNVDVISNNIANANTTGFKSSRAAFQDLIYQNVAREGALTAEDGTVR 62 Query: 52 ---IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 +D + G L+ + G I+TG +LD A++G +FA+ P G TRDG F+ Sbjct: 63 PTGVDIGLGVQTVGTVRLNTQ-GGLIATGNDLDLAIDGPGYFAVNLPDGSQGYTRDGGFR 121 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG-------------EKGEISQKGKV 154 V +G LV+ G +D V ++ K EI G E G+++ Sbjct: 122 VNAEGQLVNLQGHE--IDPGLVIPELTTKVEINESGVVMAYVENDPAPVELGQLTLT-TF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + GL V + F++ E SG P +P P E G+ +++G LE SN N + ++ +I Sbjct: 179 MNDSGLRPVGNNL-FLQSEASG-EP-VPAVPGEPGIGI-IRQGHLEGSNVNIIQQITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + I+ ++ M Sbjct: 235 AAQRAYEMNSKAIETADQMM 254 >gi|157373207|ref|YP_001471807.1| flagellar hook protein FlgE [Shewanella sediminis HAW-EB3] gi|157315581|gb|ABV34679.1| flagellar basal body FlaE [Shewanella sediminis HAW-EB3] Length = 398 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N+ TVG+R + +FS A+ N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGYRGGRSEFS----AVYNGGQAGGVNVMSTS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGK-- 120 + S GS + TG ELD ++GD +F L G L +R G F DG + +G Sbjct: 58 QNFSMG-GSLVYTGRELDMGIQGDGFFVLSGQDGSTLYSRAGMFSQDADGYITDPAGNRL 116 Query: 121 --YPV 123 YPV Sbjct: 117 QGYPV 121 >gi|83955138|ref|ZP_00963794.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. NAS-14.1] gi|83840467|gb|EAP79640.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. NAS-14.1] Length = 261 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 55/267 (20%) Query: 7 IGLAA--QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND------ 51 +G+AA LA + + +A+N++N +T GF++ + F ++V G++ ++ Sbjct: 4 LGIAATGMLAQQTNVDVIANNIANANTTGFKSGRAAFQDLVYQSFASAGSLTSEEGTARP 63 Query: 52 IDQKISFVASGKEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 + I + + G I T +LD A+EG +F + P G TRDG F+++ Sbjct: 64 VGTDIGLGVQAAGVIRHNIQGGLIQTENQLDLAIEGRGYFTVNRPDGTQAFTRDGNFQLS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ 167 +G LV+ +G Y V VP + + EI+Q+G V+A + V++ Q Sbjct: 124 AEGQLVTLNG-YEVEPAIIVP----------ELTRQVEINQEGVVMAYVENAPEPVELGQ 172 Query: 168 -GFVRREN-SGISP-----------------NIPPTPLEDLSGVTVKR-GFLEDSNANSM 207 F N +G+ P N+P TP GV + R G+LE SN N + Sbjct: 173 LNFATFLNEAGLKPVGDNLMEQTAASGEPVQNVPGTP-----GVGITRQGYLEQSNVNII 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM 234 ++ +I + + + I+ ++ M Sbjct: 228 QQITDLISAQRAYEMNSKAIETADQIM 254 >gi|261253613|ref|ZP_05946186.1| flagellar basal-body rod protein FlgF [Vibrio orientalis CIP 102891] gi|260937004|gb|EEX92993.1| flagellar basal-body rod protein FlgF [Vibrio orientalis CIP 102891] Length = 249 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 37/225 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L A+N++N T GFR D+ Q S A G+ S+ Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLAQARSMQAYGEGVPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 + GS I+TG +LD ++GD W ++ G LTR+G V +G L + +G + V Sbjct: 63 GHNFQQGSVITTGRDLDVTIQGDGWISVLDQTGKEGLTRNGNLNVDVNGLLTNGNG-HLV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI-- 181 L PI +P +G G IS + + VD + R N + +I Sbjct: 122 LGETGAPITLPIPVSKVEIGNDGTISVVPQGAPADAIEVVDRIK-LTRTNNQSLFKDING 180 Query: 182 ------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P T E + V + G +E SN N++ EM +I L ++F Sbjct: 181 LFRAKDPNTAYEADADVKLLTGAIEGSNVNAIGEMTSLIDLQRQF 225 >gi|254251192|ref|ZP_04944510.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] gi|124893801|gb|EAY67681.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] Length = 252 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 104/240 (43%), Gaps = 24/240 (10%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVAS--GK 63 A +L+Q+ + VA+N++N T GFR + V G+ + + +AS G Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSTVDPATTRTYVLASTPGA 70 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYP 122 ++ G TG LD A++G W +++ P G TR G V +G LV+AS P Sbjct: 71 DFAP---GPISRTGNPLDVAVQGPGWLSVQLPDGGEAYTRAGNLHVDQNGQLVNAS-NLP 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSG 176 V+ PI +P E+ +G+ G +S V L V+ + R N G Sbjct: 127 VVGNGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQLKLVNPDPATLTRGNDG 184 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 + P + V V LE SN N + M MI + F + LI D+NE+S Sbjct: 185 LFRTADGNPADADPNVVVVPNSLEGSNVNPVNAMVSMIDNARAFQLQSKLIETADQNEQS 244 >gi|312621331|ref|YP_004022944.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] gi|312201798|gb|ADQ45125.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] Length = 255 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 122/252 (48%), Gaps = 26/252 (10%) Query: 10 AAQLALEQRL-STVADNMSNTDTVGFR----TIKVKFSEVVGAIKNDI---DQKISFVAS 61 A+ + L Q+L A+N++N T GF+ I+ + +V I + + D I +++ Sbjct: 9 ASGMILNQKLMDLTANNVANVSTTGFKRDVAQIESFRNMLVYRIYDKVTSPDNAIGYMSL 68 Query: 62 GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESPRG-----IILTRDGRFKVTDD 111 G + +S+ V G +I T L+ A++GD +F +E P I TR+G F + Sbjct: 69 GAD-VSRIVSDFSQGLYIKTDEPLNLAIKGDGFFTIEVPENQGAQQIFYTRNGAFTLNSR 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS-QGFV 170 G LV+ +G Y + + +Q + I E+G + Q G+++ + + VD + + Sbjct: 128 GELVTLNGFYVLGQNGRIVLQNGGQVRI---DEQGNVYQNGRIVDRLRV--VDFQDKSLL 182 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R+ + + SG V +G+LE SN NS+ EM MI++ + + + Sbjct: 183 RKVGNNLYEADATVQQIPFSG-KVLQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFVIQ 241 Query: 231 EKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 242 DETLQKAVNEIA 253 >gi|326319098|ref|YP_004236770.1| flagellar basal-body rod protein FlgF [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375934|gb|ADX48203.1| flagellar basal-body rod protein FlgF [Acidovorax avenae subsp. avenae ATCC 19860] Length = 246 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 9/225 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR + +A+N++N T GFR F V ++ D + F + G Sbjct: 14 AAAQRQAVLANNLANASTNGFRAEMSTFRSV--PVQGDGSKTRVFALEATSGHVETPGPV 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G+AWFA++ G TR+G F+V +G L +++G VL PI Sbjct: 72 QRTGRNLDAMAVGNAWFAVQGLDGTEAYTRNGSFEVNAEGQLRTSNG-LTVLSDGGGPID 130 Query: 133 IPQKDEIFNVGEKGEISQK--GKVIATMGL--YSVDMSQGFVRRENSGISPNIPPTPLED 188 +P ++ +G G I+ + G+ +G + + ++R + + P+ + Sbjct: 131 VPPGADV-TLGSDGTITARVAGQQPTPIGRLKLATPTPEDPLKRGDDALFRTASGDPMPN 189 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + G LE SN N++ M MI +++F + L+ E + Sbjct: 190 DPNARLLSGALEGSNVNAVESMVGMIAASRQFEAQMRLLQTTENN 234 >gi|58039417|ref|YP_191381.1| flagellar basal body rod protein FlgG [Gluconobacter oxydans 621H] gi|58001831|gb|AAW60725.1| Flagellar basal-body rod protein FlgG [Gluconobacter oxydans 621H] Length = 263 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/264 (23%), Positives = 124/264 (46%), Gaps = 41/264 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISF-- 58 G+ AQ + + T+++N++N T G++ + +F ++ VGA +D I Sbjct: 10 GMQAQ---QTNVETISNNIANMSTTGYKRSRAEFQDLIYQNIRRVGASSSDTGTTIPAGA 66 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 V + Y + GS T LD A++G +F ++ P G + TRDG F + ++G Sbjct: 67 QVGLGVKTAAIYRINDQGSLEQTSNSLDLAVQGRGYFQVQLPSGQLAYTRDGTFSMDNNG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIA---TMGLYSVD 164 SLV+A G + S I IP + +V + G++S Q + +G+++ + Sbjct: 127 SLVTADGY-----LISPTITIPNNAQSISVDQSGQVSVQIAGQNNTTLVGQLQLGIFTNE 181 Query: 165 -----MSQG-FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 M Q F + SG + P E + ++ +G++E+SN N + E+ +I + Sbjct: 182 NGLAAMGQNLFTQTTASGDAMMGNP---EAVGYGSIMQGYVENSNVNVVTEITDLITAQR 238 Query: 219 KFNSITTLIDENEKSMLEAIRNIA 242 + + +I ++ M++ + N+ Sbjct: 239 AYEMNSKVITASDD-MMKTVTNLG 261 >gi|315125986|ref|YP_004067989.1| flagellar basal-body rod FlgG [Pseudoalteromonas sp. SM9913] gi|315014500|gb|ADT67838.1| flagellar basal-body rod FlgG [Pseudoalteromonas sp. SM9913] Length = 261 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 120/242 (49%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GLAAQ + R++T+++N++N T GF+ + F ++ GA ++++Q S + Sbjct: 11 GLAAQ---DLRMTTISNNLANVSTAGFKKDRAVFEDLFYQVQKQPGAQVDELNQLPSGIQ 67 Query: 61 SG---------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 G K++ GSF +T +LD A+ G +F +ESP G ++ TR+G+F++ Sbjct: 68 VGTGVRINGTQKQFTE---GSFETTSNQLDVAIAGQGFFQIESPDGELLFTRNGQFQLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMS 166 + LV+++G L +A I +P+ ++G G ++ + + + + +V+ + Sbjct: 125 ESLLVNSNG----LPLAQ-NIALPEGTTKVSIGTDGTVTAVVGKDAQAVELGQMLTVNFA 179 Query: 167 Q--------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G + RE + + P ED G +++ +E SN + + EM MI + + Sbjct: 180 NPAGLQSLGGNLYRETAASGEPVEGIPGEDAFG-GLQQFTIEGSNVSVVDEMVSMIAVQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|195953934|ref|YP_002122224.1| flagellar basal body rod protein [Hydrogenobaculum sp. Y04AAS1] gi|195933546|gb|ACG58246.1| flagellar basal body rod protein [Hydrogenobaculum sp. Y04AAS1] Length = 253 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 25/236 (10%) Query: 9 LAAQLALEQR-LSTVADNMSNTDTVGFRT--------IKVKFSEVVGAIKNDIDQKISFV 59 LA+ ++LEQR L VA+N++N DT GF+ ++ G ++ + Sbjct: 11 LASGMSLEQRRLDVVANNIANADTPGFKKDFLSALAYYTPDATKEPGNAPDNPSNNYVYP 70 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 K Y + G T LD A+ G +F + + +G I R G F++ +G LV+ Sbjct: 71 IMEKIYTNYTEGPIKKTDNPLDLAINGKGFFKVMNDKGEIFYQRRGDFQLDKNGYLVNHY 130 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEI-------SQKGKVIATMGLYSVDMSQGFVR 171 G VL + PIQIP ++ +G + ++ + T+GL VD++ Sbjct: 131 GM-KVLGPKNQPIQIPPIATSIHISPQGNVFITTQGTNETPSQVGTIGL--VDLTNPEKA 187 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + + N P + T+ +G LE SN N + EM Q+I L++ + L+ Sbjct: 188 GNDLYTAQNATPD-----TTSTLIQGALEGSNVNPVREMVQLIDLSKAYQVYGNLV 238 >gi|302874614|ref|YP_003843247.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|307690775|ref|ZP_07633221.1| flagellar basal body rod protein FlgG [Clostridium cellulovorans 743B] gi|302577471|gb|ADL51483.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] Length = 255 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 17/242 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------FVASGKEYLS 67 A + +L T+++N++N +T G+R ++ FS++V N + S + +G S Sbjct: 14 AQQNKLDTISNNIANVNTTGYRALQSNFSDLVYDSYNRLGTPNSGKDTELLIGTGTRLAS 73 Query: 68 ---KEV-GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 +V GS + T +FAL+G +F + + G TR+G FK+ +G L G Y Sbjct: 74 TIRNDVQGSLLETKVSTEFALDGPGFFKITTADGTEAYTRNGSFKIDSNGDLCDDKGNYL 133 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDMSQGFVRRENSGISPNI 181 ++ P++ + F V G I+ K G+ T+G + + G + S + Sbjct: 134 SIEFNGQPVKFNPNN--FAVNPDGTITVKEGEAARTVGRIPIFNAIGNDSFSSIADSLYV 191 Query: 182 PPTPLEDL--SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P ++ + + +G+LE+SN + EM MI +TQ+ +++ + M + Sbjct: 192 PKDGVQVYRENNTDILQGYLENSNVDMSKEMTDMI-VTQRAFELSSKVLSTGDQMWGIVN 250 Query: 240 NI 241 NI Sbjct: 251 NI 252 >gi|148266116|ref|YP_001232822.1| flagellar basal body rod protein FlgG [Geobacter uraniireducens Rf4] gi|146399616|gb|ABQ28249.1| flagellar basal-body rod protein FlgG [Geobacter uraniireducens Rf4] Length = 262 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + + VA+N++N +T GF+ + F +++ GA + Q + + Sbjct: 11 GMQAQ---QLNIDVVANNLANVNTTGFKKSRADFQDLMYQNLKTSGAPSTNATQIPTGIQ 67 Query: 61 SG----KEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 G +SK G+ TG E+D A+EG+ +F ++ P G +R G FK G Sbjct: 68 VGLGSKAAAVSKIFTAGNITQTGNEMDLAIEGEGFFQIQMPDGSTNYSRAGSFKKDSQGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VIATMGLYSVDMSQ 167 +V++ G YP+L + IP VG G +S Q G+ + T+ L + Sbjct: 128 MVNSDG-YPLLP----EVIIPNNATKITVGNDGTVSVMQSGQNTPTSVGTIQLATFSNPA 182 Query: 168 GFVRRENSGISPN----IPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 G ++ P T +G+ T+ +GFLE SN + M EM MI + Q+ Sbjct: 183 GLSSLGHNLYQPTDSSGAATTGTSGQNGIGTLSQGFLEMSNVSVMEEMVNMI-VGQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + + ML+ N+ Sbjct: 242 INSKAVQAADEMLQTANNL 260 >gi|291613039|ref|YP_003523196.1| flagellar basal-body rod protein FlgF [Sideroxydans lithotrophicus ES-1] gi|291583151|gb|ADE10809.1| flagellar basal-body rod protein FlgF [Sideroxydans lithotrophicus ES-1] Length = 247 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 15/226 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q+ ++V+ N++N +T GFR F V + + +FV G ST Sbjct: 17 QQQASVSQNLANINTPGFRASIDAFRSV--PLVGEGLPTRTFVVDSTAGADFTPGVIQST 74 Query: 77 GTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G LD A++G W A++ G TR+G F+V +G L + SG + D S PI IP Sbjct: 75 GRSLDVAVDGKGWIAVQDANGNEAYTRNGSFQVLPNGILQTNSGLNVMGD--SGPITIPP 132 Query: 136 KDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 E+ ++ + G IS QK V+ L + + + R + P + Sbjct: 133 DTEV-SIAKDGTISTVPTTNQKNGVVVVGRLKLTNPPEDQLVRGEDALFRMKDGNPADAD 191 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEK 232 + VTV G LE SN N + M MI L ++F+ L+ D+N K Sbjct: 192 AKVTVVSGSLESSNVNMVESMVNMISLARQFDQQMKLLQTADDNAK 237 >gi|190890382|ref|YP_001976924.1| flagellar hook protein [Rhizobium etli CIAT 652] gi|190695661|gb|ACE89746.1| flagellar hook protein [Rhizobium etli CIAT 652] Length = 433 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 22/117 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTV+DN++N +T G++ + FS +V G ++ + Q +S Sbjct: 16 AQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVS------ 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ GD +F ++ P G +LTR G F D+G+LV+A+G Sbjct: 70 -----DQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFTKDDEGNLVNAAG 121 >gi|119477952|ref|ZP_01618052.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] gi|119448865|gb|EAW30107.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] Length = 275 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 29/188 (15%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ I TG +LD A+ GD W A+++P G TR G KV +G L++A+ PVL Sbjct: 98 GALIETGRDLDMAVVGDGWIAVQAPDGSEAYTRMGSLKVDPNGQLLTAT-DLPVLGDGG- 155 Query: 130 PIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS------QGFVRRENS 175 PI +P D+I +G G I+ + ++ + L D + G +RR + Sbjct: 156 PISLPPADKI-TLGADGTITIRPTGQPPEVLSIVDRIKLVKPDYADLDKGVDGLMRRLDG 214 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 G E + + ++ GF+E SN N + E+ ++ L ++F + +++EN Sbjct: 215 GQQ--------EPDASIRLQSGFVESSNVNPVDELTAIMALARQFEINVKMMKVMEENSD 266 Query: 233 SMLEAIRN 240 + + +R+ Sbjct: 267 AARQVLRS 274 >gi|258404726|ref|YP_003197468.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] gi|257796953|gb|ACV67890.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] Length = 243 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 23/232 (9%) Query: 8 GLAAQL---ALEQ-RLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFVASG 62 GLAA L ALE+ RL +++N++N D GF+ ++ F +++ A + S + Sbjct: 6 GLAAPLSGAALERTRLQVLSNNLANIDNAGFKQDRLLFETQLDNAQAGRTGEGTSRLQMT 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 + G TG LD A++G +F + + G TR G F + DG+LV+ +G+ Sbjct: 66 STHTDFSQGGLQHTGRPLDLAIKGGGFFKVATDDGFAYTRHGSFVLQPDGALVTPTGEQV 125 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVR------RENS 175 V + V + D + E+G + + G + LY+VD Q + R Sbjct: 126 VGETGPVNL----TDSNVRISEEGSVFGENGVEQGQLDLYTVDDLQQLEKQGANLWRRPE 181 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G+S + ++ T+ +G LE SN +++ ++I + F S I Sbjct: 182 GVSERV-------VAESTLHQGQLESSNVSAIEMTTELIQAERGFQSFQKAI 226 >gi|23015788|ref|ZP_00055555.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 261 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 123/265 (46%), Gaps = 34/265 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 S NI LA + + +++N++N +T F + +F+++ VG+ +D Sbjct: 3 SLNIAATGMLAQQTNVEVISNNIANMNTTAFTRRRPEFADLLYQNLRRVGSQSSDTG--- 59 Query: 57 SFVASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 + V +G + Y E GS ST LD A++G +F ++ P G TRDG Sbjct: 60 TIVPTGVQLGLGVKTTAVYRITEQGSVQSTDNTLDMAVQGKGYFQIKLPSGETAYTRDGS 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 F+++ +G++V+ G Y V+ ++P + + ++ V + G++ + K T+ Sbjct: 120 FQLSPEGTIVTHEG-YQVIPQVTIPSDAVGVTVDSTGQVI-VKQDGQVQSQIKGQLTLAT 177 Query: 161 YSVDMS----QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 ++ D G + E + TP + G T+ +GFLE SN N + E+ +I Sbjct: 178 FANDAGLEARGGNLFMETPASGQPVVQTPGKPGFG-TILQGFLETSNVNVVAEVTNLIGA 236 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ ML I + Sbjct: 237 QRAYEMNSKVIQASDE-MLSTINQM 260 >gi|297183134|gb|ADI19277.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0200_39L23] Length = 262 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKIS---F 58 G+AAQ ++ + T A+N++N +T G++ KV F +++ + + + ++ Sbjct: 11 GMAAQ---QRNIDTTANNLANVNTSGYKKSKVHFQDLLYHNERTAGVPSSVSTQVPVGLH 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G +++ E G+ +TG +LD +++G +F + P GI+ +RDG F + G Sbjct: 68 VGHGVKFIGTEKIHTQGNLENTGNDLDISIDGHGFFQILQPNGIVGYSRDGHFNIDGMGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 LV+ G +LD I IPQ VG G ++ + I ++ L Sbjct: 128 LVTNDGM--LLDPE---INIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSVQLARFQNPA 182 Query: 168 GFVR-RENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 G +N +S + D G ++ +GFLE SN + + EM MI +Q+ Sbjct: 183 GLTPIGKNLYVSTPASGNAIVDAPGANSMGSLTQGFLERSNVSLVEEMVNMI-TSQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 + + ++ ML+ N+ Sbjct: 242 VNSKAIQSADEMLKNTNNL 260 >gi|227820858|ref|YP_002824828.1| flagellar basal body rod protein FlgG [Sinorhizobium fredii NGR234] gi|227339857|gb|ACP24075.1| flagellar basal-body rod protein FlgG [Sinorhizobium fredii NGR234] Length = 262 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 33/236 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T G++ + +FS+++ + N +Q I + V Sbjct: 13 AQQLNLE----VIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIVPEGAIV 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GS ++T +LD AL G WF +E+P G + TR G F G L Sbjct: 69 GLGVQTAAVRNLHVQGSLVNTSNDLDLALVGRGWFQVETPNGETVYTRSGAFNTNATGQL 128 Query: 115 VSASGKYPVLDMASVP-----IQIPQKDEIF-NVGEKGEISQKGKVIATMGLYSVDMS-Q 167 V+ G Y V+ +VP I + ++ +G+ E + G++ + + Q Sbjct: 129 VTIDG-YTVVPGITVPQDATEITVSASGQVLVRIGDATETQEIGQLTIANFVNEAGLEPQ 187 Query: 168 G---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G F + SG P I TP D +K+G+LE SN + + E+ +I + + Sbjct: 188 GENLFKQTAASG-EP-IVGTP-ADPGFAQIKQGYLESSNVDPVKEITDLISAQRAY 240 >gi|289208114|ref|YP_003460180.1| fagellar hook-basal body protein [Thioalkalivibrio sp. K90mix] gi|288943745|gb|ADC71444.1| fagellar hook-basal body protein [Thioalkalivibrio sp. K90mix] Length = 408 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKISFVA 60 FNIGL+ + + L T +N+SN T GF+ + +F +V G + S + Sbjct: 3 FNIGLSGLNSAQADLQTTGNNVSNAGTTGFKRSRAEFGDVFAQSFGGVSQTATGGGSRLM 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + S+ F G LD A++G+ +F + + TR G F+V DG+LV+ G+ Sbjct: 63 AVTQQFSQGRTEFTENG--LDLAIDGEGFFVMNDGGNRVYTRAGEFQVNRDGNLVNNQGQ 120 Query: 121 ----YPVLDMASVPIQIPQKDEIFNVGEKGEI 148 YP PI D FN G+ G++ Sbjct: 121 QLQGYP-------PINPGSTDTDFNTGQLGDL 145 >gi|319409187|emb|CBI82831.1| Flagellar basal-body rod protein flgG [Bartonella schoenbuchensis R1] Length = 264 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 113/243 (46%), Gaps = 42/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKI----S 57 G+AAQ + L +A+N++N +T GF+ + +F++++ + N ++Q I + Sbjct: 12 GMAAQ---QTNLDVIANNLANINTTGFKRARAEFADLMYVADRAVGVPNMLNQAIVPEGA 68 Query: 58 FVASG-KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + G + ++V G+F+ TG LD A+ G+ WF ++ P G + TR G F +++ G Sbjct: 69 MIGMGVRTAAVRKVNMQGAFVQTGNALDLAINGNGWFEVQDPNGNVFYTRSGAFNLSETG 128 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IAT 157 + + G ++ I IP + V G + + G++ + Sbjct: 129 QIETLDG-----NLVQPAITIPIGSKNITVSPDGTVYYQTDMDPTPVEAGRLNLVNFVNA 183 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 +GL +V + + RE +P P +D G + + LE SN + + E+ ++I Sbjct: 184 VGLEAVGDN---LFRETPASGAPVPGFPKDDGYG-GIMQAMLESSNVDPVKEITELIAAQ 239 Query: 218 QKF 220 + + Sbjct: 240 RSY 242 >gi|323527712|ref|YP_004229865.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1001] gi|323384714|gb|ADX56805.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1001] Length = 252 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 17/232 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSK 68 ALEQ+ + VA+N++N T GFR F V G+ ND + +FV S Sbjct: 15 ALEQQ-AIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR-TFVLSSTPGADY 72 Query: 69 EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A+EG W ++++ G TR G + +G LV+A+ + VL Sbjct: 73 TPGPIQQTGNPLDVAIEGPGWLSVQTADGGEAYTRAGNLHIDQNGQLVNATNQV-VLGNG 131 Query: 128 SVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 P+ +P +I +G G ++ V+ L V+ + R + G+ Sbjct: 132 G-PVSVPPGAQI-TIGRDGTVTALTPGDPPTAVVTIDQLKLVNPDPQTLTRGDDGLFRTA 189 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P + V V LE SN N + M MI ++F T L++ +K+ Sbjct: 190 DGNPADADPTVAVAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLESADKN 241 >gi|70729006|ref|YP_258740.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens Pf-5] gi|68343305|gb|AAY90911.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens Pf-5] Length = 261 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 54/266 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+ +++N++N T GF+ + +F +++ IK Sbjct: 11 GLSAQ---DTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDSELPTGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G TRDG F + Sbjct: 68 VGTGVRIVGTQKNFTA---GSLQTTEQPLDLAINGRGFFQILQPDGTTAYTRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+ASG L+ A V +P + F VG+ G +S Q I Sbjct: 125 DGQIVTASGF--ALEPAVV---VPNDAQTFTVGQDGTVSITIAGNPASQVIGNLQTADFI 179 Query: 156 ATMGLYSVDMSQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 GL +QG F+ SG +P I TP + G T++ LE SN +++ EM Sbjct: 180 NPAGL----QAQGNNLFLETAASG-APQI-GTPGLNGFGTTLQN-TLEASNVSTVEEMVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ + + + ML I Sbjct: 233 MIT-TQRAYEMNSKVISTADQMLSFI 257 >gi|163782718|ref|ZP_02177714.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] gi|159881839|gb|EDP75347.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] Length = 262 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 43/237 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKIS-FV 59 G+ AQ + L ++ NM+N +T+GF+ ++ F +++ GA + + S F Sbjct: 11 GMTAQ---QTNLDVISHNMANVNTIGFKKMRPTFQDLIYQTVREPGAPTSPTTRSPSGFQ 67 Query: 60 ASGKEYLSKEVGSFI-----STGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 Y++ G F TG LD A++GD +F + P G I TR+G+F++ DG Sbjct: 68 IGLGTYIADTYGIFTQGNINQTGNTLDLAIQGDGFFKVVLPDGTIAYTRNGQFRLDRDGR 127 Query: 114 LVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLY 161 +V++ G YP+ S+P I I D V +G S + K + GL Sbjct: 128 IVNSDG-YPLDPEISIPPDALSIGI-AADGTVTVLRQGATSVEEVGRIELAKFVNPAGLR 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 V + +++ + SG PL D G T+ +G+LE SN N + EM +I Sbjct: 186 RVGNNL-YIQTDASG-------EPLIDNPGNQGIGTLLQGYLESSNVNIVEEMVNLI 234 >gi|149927800|ref|ZP_01916051.1| flagellar basal body rod protein FlgG [Limnobacter sp. MED105] gi|149823422|gb|EDM82653.1| flagellar basal body rod protein FlgG [Limnobacter sp. MED105] Length = 260 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + +L +++N++NT T GF+ + F +++ GA + Q S Sbjct: 11 GLDAQ---QTQLDVISNNLANTATNGFKRSRAVFEDLLYQTLRQPGAQTTEQTQVPSGLQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G + +S G+ TG LD A+ G +F ++ P G TRDG ++ +G+ Sbjct: 68 IGTGVKPVSTVRNFAQGNLQQTGNTLDVAINGQGFFQVQMPDGTTSYTRDGSIQIDANGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 LV+++G YPVL P+ IPQ + ++ + G +S Q + Sbjct: 128 LVTSNG-YPVLG----PVTIPQGVQEISISQDGVVSAVVQGQVQPQELGQIQLASFVNPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEMGQMIHLT 217 GL+S M Q + P + +GV V +GF+E SN N + E+ +I Sbjct: 183 GLFS--MGQNLYSET---AASGAPTQAVAGTNGVGFVSQGFVETSNVNVVEELVGLIQAQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|330826757|ref|YP_004390060.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans K601] gi|329312129|gb|AEB86544.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans K601] Length = 260 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQ------ 54 G++AQ + +L ++ N++N T GF+ F ++ VGA + +Q Sbjct: 11 GMSAQ---QTQLDVISHNLANVSTTGFKRNSAVFEDLIYQNLRQVGAQTTEENQLPTGLH 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + VA+ + + GS + LD A+ G+ +F ++ P G I TRDG F++ Sbjct: 68 LGLGVRTVATSRNFTQ---GSLQQSSNSLDVAINGNGFFEVQLPDGTIGYTRDGSFQLDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----I 155 G +V+ SG PV + I +PQ ++ E G +S Q G++ I Sbjct: 125 QGRMVT-SGGLPVAN----GITVPQGATSISISETGVVSATIAGNAQPQQLGQLAMSSFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL V + + +E++ P P + GV +K+GFLE SN N + E+ MI Sbjct: 180 NAAGLQPVGQN---MYKESAASGPPQQGQPGTNGLGV-IKQGFLETSNVNVVEELVTMIQ 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|71281915|ref|YP_268223.1| flagellar basal-body rod protein FlgF [Colwellia psychrerythraea 34H] gi|71147655|gb|AAZ28128.1| flagellar basal-body rod protein FlgF [Colwellia psychrerythraea 34H] Length = 247 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 23/217 (10%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q LS A+N++N T GF+ + + + A + ++ F + + + + GS + T Sbjct: 17 QALSINANNLANAKTTGFKA-DLAQARSMQAFGEGLPSRV-FSMTERASQNFDSGSILHT 74 Query: 77 GTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP- 134 G LD A+EG+ +FA+++ G TR G F++T+ G+L + G+ + + + + +P Sbjct: 75 GRSLDMAIEGEGFFAVQAEDGQEAYTRGGHFRLTETGALETNDGELVIGENGPITLPLPI 134 Query: 135 -----QKDEIFNVGEKGEISQKGKVIATMGLYSVDM------SQGFVRRENSGISPNIPP 183 +D V G S + + + L + D + G R +N G Sbjct: 135 NNIQISRDGTIMVQPAGAPSSVQEEVGRIKLVNPDTRLVDKGNDGLFRAKNGG------- 187 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + D++ V V G LE SN N + EM MI L ++F Sbjct: 188 QLIADVN-VNVLGGALESSNVNPINEMTDMIALQRQF 223 >gi|70729005|ref|YP_258739.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens Pf-5] gi|68343304|gb|AAY90910.1| flagellar basal-body rod protein FlgF [Pseudomonas fluorescens Pf-5] Length = 246 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 25/244 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A+Q AL Q+ A+N++N T GF+ + + V G D +F S + Sbjct: 12 ASQNALAQKAH--ANNLANISTNGFQRDLEQARAMPVFG----DSFPARAFAMSERPATD 65 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 GS + TG +LD A+ G+ W A++SP G R G V G L + +G PV+ Sbjct: 66 FSAGSMVETGRDLDVAVSGNGWIAVQSPDGSESYVRTGSLNVDALGVLRAGNG-MPVMGN 124 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD---MSQGFVRRENSGISPNIP- 182 PI +P + +I VG+ G IS + + VD + ++ G+ +I Sbjct: 125 GG-PIAVPPEQKI-EVGQDGTISIRAMGEGPRVMAEVDRIKLVNPDIKNLTKGLDGSIKT 182 Query: 183 ----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID---ENEKSML 235 P P + + V + GFLE SN N++ EM ++ L+++F +++ E++++M Sbjct: 183 KDGQPAPAD--ANVQLVSGFLESSNVNAVEEMTAVLALSRQFELHVKMMNSAKEDDQAMA 240 Query: 236 EAIR 239 ++ Sbjct: 241 RVLQ 244 >gi|332525065|ref|ZP_08401245.1| flagellar basal-body rod protein FlgF [Rubrivivax benzoatilyticus JA2] gi|332108354|gb|EGJ09578.1| flagellar basal-body rod protein FlgF [Rubrivivax benzoatilyticus JA2] Length = 240 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 23/237 (9%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 +R +A+N++N T GFR F V ++ D + + G T Sbjct: 17 ERQDVLANNLANASTTGFRAELQAFRAV--PVRGDGASTRVYALESTVGHDDQSGPLQVT 74 Query: 77 GTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G LD A+ G +W A++S G TR G +V+ +G LV+ SG PVL PI +P Sbjct: 75 GRNLDVAMRGKSWLAVQSLDGTEAYTRAGSMEVSAEGVLVTPSG-LPVLGDGG-PITVP- 131 Query: 136 KDEIFNVGEKGEISQK---GKVIATMGLYSVDMSQGFVR------RENSGISPNIPPTPL 186 + +G G +S GK A L V R R G P P L Sbjct: 132 ANATLTIGADGTVSAAANGGKPQAIGRLKLVTPEAPLTRGTDGLFRAADGDLPADPAARL 191 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +D G LE SN + + M QMI ++F ++ E+ A + +A+ Sbjct: 192 QD--------GALEGSNVSPVETMVQMISAARQFEQQIKMLQTAEQKEQGATKLLAT 240 >gi|238028847|ref|YP_002913078.1| flagellar basal body rod protein FlgG [Burkholderia glumae BGR1] gi|237878041|gb|ACR30374.1| Flagellar basal-body rod protein [Burkholderia glumae BGR1] Length = 262 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 121/276 (43%), Gaps = 47/276 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LT 101 Q + VA+ + Y G+ TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GNLQQTGNSRDVAINGQGFFQVLMPDGTTAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKV----I 155 RDG F+ + G LV+++G Y VL I +PQ + +G G ++Q G I Sbjct: 116 RDGSFQANNQGQLVTSAG-YQVLP----AITVPQNAQSLTIGADGVVTVTQPGSTNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 +M L + +G F +SG +PN+ TP + +G ++ +G++E SN N + Sbjct: 171 GSMQLATFINPEGLNALGQNLFAETTSSG-APNV-TTPGLNGAG-SLNQGYVESSNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|300311353|ref|YP_003775445.1| flagellar basal body rod protein FlgF [Herbaspirillum seropedicae SmR1] gi|300074138|gb|ADJ63537.1| flagellar basal body rod FlgF protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 26/240 (10%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF--SEVVGAIKNDIDQKISFVASGKEYLSK 68 A+ LEQ+ +T ++N++N T GFR F + VVG D +FV Sbjct: 12 AKHTLEQQ-ATASNNLANATTTGFRAQLNTFRAAPVVG----DGLPTRTFVVDSTAGNDF 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A++G W A+++ G TR+G FK+ ++G L + SG+ + D Sbjct: 67 SQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQSGQTVLGDGG 126 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS----------VDMSQGFVRRENSGI 177 PI IP D + G +S I T G+ + V+ + ++R + G+ Sbjct: 127 --PITIP-PDATVAIAADGTVS----AIPTNGIPNAVNVLGRIKLVNPDEKNMKRGDDGL 179 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 I D + V + G LE SN N + M MI+L+++F +I E +A Sbjct: 180 FRTITGAAQPD-ANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKMIQTAESDATKA 238 >gi|126730134|ref|ZP_01745946.1| flagellar basal-body rod protein FlgG [Sagittula stellata E-37] gi|126709514|gb|EBA08568.1| flagellar basal-body rod protein FlgG [Sagittula stellata E-37] Length = 261 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++AQ + R+ +++N+SN T G+ + +F+++ + + + AS L Sbjct: 10 GMSAQ---QMRVEVISNNLSNMSTTGYNARRAEFADL---HYQQMARAGTVNASNGTVLP 63 Query: 68 KEV-----------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 + G+ +TG +LD A+EG+ + + P G TRDG K T Sbjct: 64 TGIQLGLGVRPAAVSVQLSQGALSATGGDLDVAIEGNGYLEVTLPSGQAAYTRDGGLKRT 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 +G +V++ G +PV + I IP ++ GE+ + +++ L Sbjct: 124 GEGLIVTSDG-HPV----APEITIPDDARRISINADGEVYAYFAGQAQAQLLGQFTLAGF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 ++G FV E SG P I TP +D G T+++G+LEDS+ +++ E+ +I Sbjct: 179 ANAKGLEAIGSNLFVETEASG--PAIQSTPGQDGLG-TLRQGYLEDSSVDAVKEITDLIE 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRGY 240 >gi|327398888|ref|YP_004339757.1| flagellar basal-body rod protein FlgG [Hippea maritima DSM 10411] gi|327181517|gb|AEA33698.1| flagellar basal-body rod protein FlgG [Hippea maritima DSM 10411] Length = 262 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 39/257 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---------VGAIKNDIDQKISFVASGKE 64 A + + T+A+N++N +TVGF+ + F ++ V + N ++ + G + Sbjct: 14 AQQLNVDTIANNLANVNTVGFKRSRADFEDLLYQMVRQPGVASTANTVEPTGIQIGLGVK 73 Query: 65 YLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + G+F TG LD A+ G +F ++ P G TR G FK+ ++G +V++ G Sbjct: 74 PAAVVKNFSQGNFKETGNPLDIAIAGHGFFQIQMPDGTTAYTRSGAFKIDNNGRIVNSEG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI----------SQKGKV-----IATMGLYSVD 164 YP++ I IP N+G G + SQ G++ + GL ++ Sbjct: 134 -YPLIPQ----ITIPNDTVAINIGNDGTVSVLEAGQQTPSQIGQIQLAYFVNPAGLKAIG 188 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + +E + P + G T+++G LE SN + + EM +MI + + + Sbjct: 189 HN---LYQETTASGTATVDNPGSNGLG-TLEQGVLEMSNVSVVQEMVEMIAAQRAYETNA 244 Query: 225 TLIDENEKSMLEAIRNI 241 I +++ ML+ N+ Sbjct: 245 KAIQTSDE-MLQTANNV 260 >gi|195953027|ref|YP_002121317.1| protein of unknown function DUF1078 domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932639|gb|ACG57339.1| protein of unknown function DUF1078 domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 583 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 12/131 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-----K 55 M SF ++ A LS +++NMSN DT+G++ + F VV + I+ K Sbjct: 1 MLPSFYNAISGLDAFNNYLSIISNNMSNADTIGYKAVNPIFENVVANVNVGINTLTDTLK 60 Query: 56 ISFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPR---GIILTRDGRFKV 108 + +G L+ ++G+F TG D A++G+ F L+ P + TR+G+F + Sbjct: 61 STIYGAGVIVDSTQLNWQLGNFEQTGNNTDLAIQGNGLFILQDPANAGNVFYTRNGQFTI 120 Query: 109 TDDGSLVSASG 119 + G +V+ G Sbjct: 121 SQQGYMVNPDG 131 >gi|85710166|ref|ZP_01041231.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] gi|85688876|gb|EAQ28880.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] Length = 263 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 117/260 (45%), Gaps = 40/260 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVG-------AIKNDID 53 GL AQ A R+ +A+N++N T GF+ + +F+ V G A ++ Sbjct: 12 GLEAQDA---RMRVIANNLANIGTTGFKRDRAEFATLAYQEMRVAGQQSTQQTAFATGLN 68 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDD 111 +G + + G+ TG LD AL+G +F +E P G I TR G F ++ + Sbjct: 69 LGTGVQVTGTSRIEAQ-GTLNQTGNSLDLALDGPGFFQVELPGGGDIAYTRAGNFTLSPE 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGLYSVDM 165 G LV+ G Y + + PIQ+PQ + + G +S Q G+ I + + S Sbjct: 128 GQLVTTQG-YAL----TPPIQVPQGAQNITIAPDGTVSAVQPGQTAPIQIGQLQVASFVN 182 Query: 166 SQGFVRRENSGISPNIPPTPLE-DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G ++ + P++ L+G +++G LE SN N + E+ +MI + + Sbjct: 183 PAGLRAIGDNFLVETAASGPVDAGLAGQFGRGNIRQGMLETSNVNVVEELVEMIEAQRAY 242 Query: 221 NSITTLIDENEKSMLEAIRN 240 + ++ S+ E +RN Sbjct: 243 EINSKMV----SSVDEMLRN 258 >gi|330830302|ref|YP_004393254.1| flagellar basal-body rod protein FlgF [Aeromonas veronii B565] gi|328805438|gb|AEB50637.1| Flagellar basal-body rod protein FlgF [Aeromonas veronii B565] Length = 248 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 29/239 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ +N++N +T GF++ + + + A + ++ F + + + + G ++TG Sbjct: 19 LAVRGNNLANANTTGFKS-DFEQARSMQAFGEGLPSRV-FAMAERPGQNLQHGMLMTTGR 76 Query: 79 ELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++G W A++ P+ G TR G +V G+L +++G V+D PI +P Sbjct: 77 DLDVAVDGPGWIAVQDPKGGEAYTRMGNLQVNATGNLQTSTG-LNVVDDGGQPIVLPMPM 135 Query: 138 EIFNVGEKGEIS--------------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 E + G IS Q+ K++ G RR++ N P Sbjct: 136 EKLEINRDGTISGRPEGAAANLPEDFQRIKLVNPAADAVEKGQDGLFRRKD---GQNEPA 192 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLEAIR 239 + + V + G LE SN N + EM +I L ++F + I +EN+++ + +R Sbjct: 193 S-----ANVGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEENDEAQTQLLR 246 >gi|308273544|emb|CBX30146.1| Flagellar basal-body rod protein flgG [uncultured Desulfobacterium sp.] Length = 260 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 29/251 (11%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEYL 66 A + + +++N++N +TVGF+ + F +++ G+ DQ + G + Sbjct: 14 AQKMMIDVISNNLANVNTVGFKKSRPDFQDLMYQTMSQGGSTTTSGDQIPGGIQVGMGTM 73 Query: 67 SKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 V G F T ELD ++EG +F + S + TR G FK+ DG++ + +G+ Sbjct: 74 PVSVQKMFMQGDFKETKNELDLSIEGKGFFKVISNDEEVYTRAGNFKMDKDGNICTPNGE 133 Query: 121 --YPVLDMAS--VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF------V 170 P + + S + I I + + G G+ G V+ + L+S G + Sbjct: 134 KLQPAMTIPSDTMTISIDKSGTVTAFGPSGQ----GTVVGVIELHSFTNPAGLFSMGHNL 189 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R+ I P D G T+ +GF+E SN + + EM MI + Q+ +++ + Sbjct: 190 YRKTDASGDAIAAAPGSDGMG-TIAQGFIEMSNVDVVEEMVAMI-MAQRAYEVSSKSIQT 247 Query: 231 EKSMLEAIRNI 241 +ML+ NI Sbjct: 248 ADNMLQMANNI 258 >gi|237751806|ref|ZP_04582286.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] gi|229373172|gb|EEO23563.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] Length = 285 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 41/254 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 MQT + + RL +++N++N +T GF+ V + + ++ Sbjct: 1 MQTGYYGATGGMITQFNRLDVISNNLANLNTNGFKRDDVVIGDFLRMVQGHQDTLPIPDE 60 Query: 52 -------IDQKISFVAS-GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 I++ ++ V + +EY VG+ T LDFAL+ + +FA+++P GI TR Sbjct: 61 TKAAAKFINRTMTRVPTIAEEYTDFSVGAMEQTENTLDFALKAPNTFFAVQTPNGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQ---IPQKDEIFNVGEKGEISQK-------G 152 +G F ++DDG LV+ G + VL + + + + NV G +S K Sbjct: 121 NGSFSISDDGYLVTQEG-FHVLSRDGIDNEGGILMNANMQINVDTNGNVSFKELGNEGMA 179 Query: 153 KVIATMGLYSVDMSQGFVRRENSG---ISPNIPP--TPLEDLSGVT-------VKRGFLE 200 IA L V ++ G I P T E L+G V +GFLE Sbjct: 180 DNIAGGSLAIVTFDNPKFLKKIGGSLYIEERKEPDNTDSEGLAGANLVYNSGAVTQGFLE 239 Query: 201 DSNANSMYEMGQMI 214 SN N++ EM MI Sbjct: 240 KSNVNAVLEMTGMI 253 >gi|167835112|ref|ZP_02461995.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis MSMB43] Length = 253 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 104/239 (43%), Gaps = 20/239 (8%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKE 64 AAQ +LEQ+ S VA+N++N T GFR F V G+ D ++ S Sbjct: 12 AAQ-SLEQQ-SVVANNLANASTTGFRAQLATFRAVPMNFDDGSGNVDPATTRTYTLSSTP 69 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPV 123 G TG LD A++G W ++ P G TR G V +G LV+A+ PV Sbjct: 70 GADFAPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQLVTAN-NLPV 128 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGI 177 + P+ +P ++ +G G +S +A + L V+ ++R + G+ Sbjct: 129 VGNGG-PLAVPPNAQL-TIGADGTVSALMPGDPPTAVAMIDQLKLVNPDPATMKRGDDGL 186 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + + V V LE SN N + M MI + F T LI D+NE++ Sbjct: 187 FRTADGNPADADAAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSADQNEQA 245 >gi|83594175|ref|YP_427927.1| flagellar basal body rod protein FlgG [Rhodospirillum rubrum ATCC 11170] gi|83577089|gb|ABC23640.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 261 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 53/254 (20%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 + NIG LA + + +++N++N +T + + +F +++ G+ +D + Sbjct: 3 ALNIGATGMLAQQTNVEVISNNIANMNTTAYTRRRAEFHDLLYQNLRRAGSNSSDTGTIV 62 Query: 57 SF-------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 V + Y E GS ST LD A++G +F ++ P G TRDG F++ Sbjct: 63 PTGVQLGLGVKTAAVYRITEQGSVTSTNNALDLAIQGKGYFQIDLPSGETAYTRDGAFQL 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 + +G +V+ G Y V + + IP E + GE+ LY +D Sbjct: 123 SPNGEIVTHDG-YRVTGLGA----IPTNAESITINPTGEV-----------LYKIDGQTA 166 Query: 169 FVR--RENSGISPN------IPPTPLEDLSGV--------------TVKRGFLEDSNANS 206 V + + I PN I L + +G T+ +G+LE SN N Sbjct: 167 LVNAGQIQTAIFPNDAGLNAIGDNYLTETAGSGAPTVGVPGSVGFGTILQGYLESSNVNV 226 Query: 207 MYEMGQMIHLTQKF 220 + E+ ++I + + Sbjct: 227 VSEITELISAQRAY 240 >gi|325923276|ref|ZP_08184949.1| flagellar basal-body rod protein FlgG [Xanthomonas gardneri ATCC 19865] gi|325546203|gb|EGD17384.1| flagellar basal-body rod protein FlgG [Xanthomonas gardneri ATCC 19865] Length = 261 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 119/262 (45%), Gaps = 42/262 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + R+S +++N++NT+T GF+ + F +++ G+ Sbjct: 11 GLDAQ---QTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G +S + GS TG LD + G +F ++ P G TRDG F++ G Sbjct: 68 LGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-MGLYSVD------ 164 +V+ SG YP+ IQ+P+ + +G G IS G+ A +G ++ Sbjct: 128 VVTNSG-YPL----QPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPS 182 Query: 165 --MSQG---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQ 218 S+G FV SG + N P L+G+ T +G LE SN N++ E+ MI TQ Sbjct: 183 GLQSKGENLFVETTASGPAQNGTP----GLNGLGTTVQGALEGSNVNTVEELVSMIE-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + + SML + N Sbjct: 238 RAYEMNAKAISTTDSMLGYLNN 259 >gi|289666050|ref|ZP_06487631.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670510|ref|ZP_06491585.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 261 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 40/261 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + R+S +++N++NT+T GF+ + F +++ G+ Sbjct: 11 GLDAQ---QTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G +S + GS TG LD + G +F ++ P G TRDG F++ G Sbjct: 68 LGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 LV+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 128 LVTNSG-YPL----QPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPS 182 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G FV SG + N TP + G TV+ G LE SN N++ E+ MI TQ+ Sbjct: 183 GLQAKGENLFVETTASGPAQN--GTPGLNGLGNTVQ-GALEGSNVNTVEELVSMIE-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRN 240 + SML + N Sbjct: 239 AYEMNAKAISTTDSMLGYLNN 259 >gi|330809230|ref|YP_004353692.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377338|gb|AEA68688.1| Flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 257 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISF 58 M S +I + A + + ++++N++N T+G++ +V F ++V + ++D Sbjct: 1 MIDSLSIASSGLTANQAWIDSISNNVANMQTIGYKRSQVDFHDMVREVGTRDDGGGMTES 60 Query: 59 VASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + +G + + S GT LD A++GD +F + P G + TR GRF + + Sbjct: 61 LLTGAGIQASQPSQVFSPGTVRESGNALDLAIQGDGFFEVALPTGELAYTRAGRFHLDSE 120 Query: 112 GSLVSASGKYPVLDMASVP----IQIPQKDEI-FNVGEKGEISQKGKV-IATMGLYSV-- 163 G L G+ D+ P + I Q E+ + E GEI G+V +A Sbjct: 121 GQLAMPDGQTLTADLRVPPDARNLVIKQNGEVQATITETGEIINVGQVQLAKFASAEALT 180 Query: 164 DMSQGFVR-RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +S G R + SG + I P D GV ++ G++E SN N + EM ++ L Q+ Sbjct: 181 KLSDGLYRPTQASGEA--IYAEPGRDGQGVLLQ-GYVEMSNVNLIDEMSGLV-LAQRAYQ 236 Query: 223 ITTLIDENEKSMLEAIRNI 241 + + + +LE I N+ Sbjct: 237 MNARLLQASDQILETINNL 255 >gi|26991074|ref|NP_746499.1| flagellar basal body rod protein FlgG [Pseudomonas putida KT2440] gi|24986108|gb|AAN69963.1|AE016634_12 flagellar basal-body rod protein FlgG [Pseudomonas putida KT2440] Length = 261 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+ +++N++N T GF+ + +F++++ IK Sbjct: 11 GLSAQ---DTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K +++ GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 VGTGVRIVGTQKSFVA---GSLQTTDNPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+ +G L+ A I +P + F VG+ G +S Q I Sbjct: 125 DGQIVTDNGY--ALEPA---IVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ F+ SG +P + TP + G T+++ LE+SN +++ E+ MI Sbjct: 180 NPAGLQAIG-DNLFLETAASG-APQV-GTPGLNGFGTTLQQ-TLENSNVSTVEELVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|15964415|ref|NP_384768.1| flagellar basal body rod protein FlgG [Sinorhizobium meliloti 1021] gi|307311557|ref|ZP_07591198.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti BL225C] gi|307318912|ref|ZP_07598343.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti AK83] gi|17380480|sp|Q52946|FLGG_RHIME RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|15073592|emb|CAC45234.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021] gi|306895326|gb|EFN26081.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti AK83] gi|306899574|gb|EFN30203.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti BL225C] Length = 262 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 35/237 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T G++ + +FS+++ + N +Q I + + Sbjct: 13 AQQLNLE----VIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIVPEGAII 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GS ++TG + D AL G WF +E+P G + TR G F G L Sbjct: 69 GLGVQTSAVRNLHIQGSLVNTGNDYDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQL 128 Query: 115 VSASGKYPVLDMASVP------IQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSV 163 V+ G Y V+ +VP + + +G E+ + G++ + GL Sbjct: 129 VTIDG-YTVVPGVTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQLTIANFVNEAGLEP- 186 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 M + R+ + P I TP D VK+ +LE SN + + E+ +I + + Sbjct: 187 -MGENLFRQTPASGDP-IVGTP-ADPGFAQVKQNYLESSNVDPVKEITDLISAQRAY 240 >gi|254712013|ref|ZP_05173824.1| flagellar basal body rod protein FlgG [Brucella ceti M644/93/1] gi|254715082|ref|ZP_05176893.1| flagellar basal body rod protein FlgG [Brucella ceti M13/05/1] gi|261216792|ref|ZP_05931073.1| flagellar basal-body rod protein FlgG [Brucella ceti M13/05/1] gi|261319659|ref|ZP_05958856.1| flagellar basal-body rod protein FlgG [Brucella ceti M644/93/1] gi|260921881|gb|EEX88449.1| flagellar basal-body rod protein FlgG [Brucella ceti M13/05/1] gi|261292349|gb|EEX95845.1| flagellar basal-body rod protein FlgG [Brucella ceti M644/93/1] Length = 241 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 20/136 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T GF+ + +F SE + N +Q I + V Sbjct: 13 AQQLNLE----VIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALV 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GSF TG D AL G WF ++SP G + TR G F DG L Sbjct: 69 GLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQL 128 Query: 115 VSASGKYPVLDMASVP 130 V+ G PV ++P Sbjct: 129 VTLDGN-PVEPAITIP 143 >gi|306841276|ref|ZP_07473987.1| flagellar hook protein FlgE [Brucella sp. BO2] gi|306288678|gb|EFM60009.1| flagellar hook protein FlgE [Brucella sp. BO2] Length = 383 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 22/119 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 3 AQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS------ 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G ST + D A++G+ +F ++ P G LTR G F +G LV+++G Y Sbjct: 57 -----DQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAGYY 110 >gi|83944162|ref|ZP_00956618.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. EE-36] gi|83845029|gb|EAP82910.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. EE-36] Length = 261 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 55/267 (20%) Query: 7 IGLAA--QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND------ 51 +G+AA LA + + +A+N++N +T GF++ + F ++V G++ ++ Sbjct: 4 LGIAATGMLAQQTNVDVIANNIANANTTGFKSGRAAFQDLVYQSFASAGSLTSEEGTARP 63 Query: 52 IDQKISFVASGKEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 + I + + G I T +LD A+EG +F + P G TRDG F+++ Sbjct: 64 VGTDIGLGVQAAGVIRHNIQGGLIQTENQLDLAIEGRGYFTVNRPDGTQAFTRDGNFQLS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ 167 +G LV+ +G Y V VP + + EI+Q+G V+A + V++ Q Sbjct: 124 AEGQLVTLNG-YEVEPAIIVP----------ELTRQVEINQEGVVMAYVENDPEPVELGQ 172 Query: 168 -GFVRREN-SGISP-----------------NIPPTPLEDLSGVTVKR-GFLEDSNANSM 207 F N +G+ P N+P TP GV + R G+LE SN N + Sbjct: 173 LNFATFLNEAGLKPVGDNLMEQTAASGEPVQNVPGTP-----GVGITRQGYLEQSNVNII 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM 234 ++ +I + + + I+ ++ M Sbjct: 228 QQITDLISAQRAYEMNSKAIETADQIM 254 >gi|154249603|ref|YP_001410428.1| hypothetical protein Fnod_0921 [Fervidobacterium nodosum Rt17-B1] gi|154153539|gb|ABS60771.1| protein of unknown function DUF1078 domain protein [Fervidobacterium nodosum Rt17-B1] Length = 250 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 110/241 (45%), Gaps = 25/241 (10%) Query: 18 RLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKNDIDQKISFVAS----GKEYLSKE 69 ++ T+++N++N +T G++ T K F++ + IK + + + V + + E Sbjct: 18 KIDTLSNNLANVETNGYKADTPTFKAYFNKEIDRIKPEPENRRVEVKKIGNLEQAVILDE 77 Query: 70 VGSFISTG------TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 V + S G A+ GD +FA+ I TR+G F +G LV+ G Y + Sbjct: 78 VRTNFSQGILEQTNVPSHIAINGDGFFAVRKANEIFYTRNGEFIRDSNGRLVNTQGNY-L 136 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 L+ I +P E F++ E G I G VI + +Y++ + +G N+P Sbjct: 137 LNQNGQEIVVP---ETFSIDEAGNILDGNGNVIDRIAVYALSNPRKIGDTLFAGQPQNLP 193 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 L G++E SN N + EM +MI + + + + I +++ + + I N+ Sbjct: 194 EDSFRILP------GYIEKSNVNVVREMVKMIEAHRHYEATSKAIVVHDELLNKVINNVG 247 Query: 243 S 243 + Sbjct: 248 A 248 >gi|325274797|ref|ZP_08140825.1| flagellar basal body rod protein FlgG [Pseudomonas sp. TJI-51] gi|324100065|gb|EGB97883.1| flagellar basal body rod protein FlgG [Pseudomonas sp. TJI-51] Length = 261 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 109/245 (44%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+ +++N++N T GF+ + +F++++ +K Sbjct: 11 GLSAQ---DTNLTVISNNLANVSTTGFKRDRAEFADLLYQVKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K +++ GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 VGTGVRIVGTQKSFVA---GSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+A+G L+ A I +P + F VG G +S Q I Sbjct: 125 DGQIVTANGY--ALEPA---IVVPNDAQTFTVGTDGTVSITTAGNPAAQVIGNIQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ F+ SG +P + L T ++ LE+SN +++ E+ MI Sbjct: 180 NPAGLQAIG-DNLFLETAASG-APQVGTPGLNGFG--TTQQQTLENSNVSTVEELVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|330808197|ref|YP_004352659.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376305|gb|AEA67655.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 261 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+T+++N++N T GF+ + +F +++ +K Sbjct: 11 GLSAQ---DTNLTTISNNLANVSTTGFKRDRAEFQDLLYQVKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A++G +F + P G TRDG F + Sbjct: 68 VGTGVRIVGTQKNFTA---GSLQTTEQPLDMAIDGRGFFQILQPDGTTSYTRDGTFHLDS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 +G +V+ASG L+ A I IP + F VG G +S Q I Sbjct: 125 NGQIVNASGF--ALEPA---IIIPNDAQTFTVGRDGTVSITVAGNPASQVIGNLQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL +V + F+ SG +P + TP + G T++ LE SN +++ EM MI Sbjct: 180 NPAGLQAVG-NNLFLETAASG-APQV-GTPGLNGFGTTLQN-TLETSNVSTVEEMVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|21231395|ref|NP_637312.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768552|ref|YP_243314.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. 8004] gi|188991639|ref|YP_001903649.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. B100] gi|325916945|ref|ZP_08179189.1| flagellar basal-body rod protein FlgG [Xanthomonas vesicatoria ATCC 35937] gi|21113060|gb|AAM41236.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573884|gb|AAY49294.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Xanthomonas campestris pv. campestris str. 8004] gi|167733399|emb|CAP51600.1| unnamed protein product [Xanthomonas campestris pv. campestris] gi|325536848|gb|EGD08600.1| flagellar basal-body rod protein FlgG [Xanthomonas vesicatoria ATCC 35937] Length = 261 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 42/262 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + R+S +++N++NT+T GF+ + F +++ G+ Sbjct: 11 GLDAQ---QTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G +S + GS TG LD + G +F ++ P G TRDG F++ G Sbjct: 68 LGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 128 VVTNSG-YPL----QPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPS 182 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQ 218 G FV SG + N P L+G+ T +G LE SN N++ E+ MI TQ Sbjct: 183 GLQAKGENLFVETTASGPAQNGTP----GLNGLGTTVQGALEGSNVNTVEELVSMIE-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + + SML + N Sbjct: 238 RAYEMNAKAISTTDSMLGYLNN 259 >gi|94495409|ref|ZP_01301989.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] gi|94424797|gb|EAT09818.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] Length = 262 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 43/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKN-DIDQKI----- 56 GL AQ ++ +A+N++N +T GF+ + F ++V A N D + K Sbjct: 12 GLDAQ---NTKMRVIANNLANVNTTGFKKDRADFETLAYQQIVQAGANSDAENKFATGLN 68 Query: 57 --SFVA-SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 S VA G ++ + G+ T LD A+EG +F ++ P G I +R G F VT +G Sbjct: 69 LGSGVALQGTSKINSQ-GTLTQTSNALDMAIEGSGYFQVQQPDGSIAYSRAGNFSVTAEG 127 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-IATM--- 158 ++V+ G P++ I +PQ ++G G E SQ G++ +A+ Sbjct: 128 TIVTGDG-LPLIPQ----ITVPQGATSVSIGNDGTVSATLQGESEPSQLGQIELASFMNP 182 Query: 159 -GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL S+ + V SG +P + LE GV ++ G+LE SN N + E+ MI Sbjct: 183 SGLQSIGGNL-LVETAASG-TPQVGVAGLEG-RGV-IRSGYLETSNVNIVEELVDMIETQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +NI Sbjct: 239 RAYEVNSKMIKATDEMLQYVNQNI 262 >gi|17548568|ref|NP_521908.1| flagellar basal-body rod protein FlgG [Ralstonia solanacearum GMI1000] gi|17430816|emb|CAD17498.1| probable flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum GMI1000] Length = 260 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 115/253 (45%), Gaps = 37/253 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-----VAS 61 A + +L +++N++N +T GF+ + F +++ GA Q+ + + + Sbjct: 14 AQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGA---QSSQQTTLPSGMQIGT 70 Query: 62 GKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 G ++ E G+ TG D A+ G+ +F ++ P G + TRDG F++ G LV+ Sbjct: 71 GTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS-------QKGKVIATMGLYSVDM 165 +SG YPV +VP KD V G ++ Q I GL S+ Sbjct: 131 SSG-YPVQPAITVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQLANFINPAGLRSMGE 189 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + + E SG + N+ P + GV + + ++E SN N + EM MI TQ+ I + Sbjct: 190 NL-YAETEASGTA-NL-AAPGSNGIGV-LNQNYVETSNVNVVEEMVNMIQ-TQRAYEINS 244 Query: 226 LIDENEKSMLEAI 238 + MLE + Sbjct: 245 KAVQTSDQMLEKL 257 >gi|312126441|ref|YP_003991315.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] gi|311776460|gb|ADQ05946.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] Length = 255 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 36/257 (14%) Query: 10 AAQLALEQRLSTV-ADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------DQKISFVAS 61 A+ + L Q+L + A+N+ N T GF+ + + I D I +++ Sbjct: 9 ASGMILNQKLMDITANNVGNVSTTGFKRDVAQVESFRNMLAYRIYDKPSSPDNAIGYMSL 68 Query: 62 GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESPRG-----IILTRDGRFKVTDD 111 G + +S+ V G +I T L+ A+ G+ +FA+E P I+ TR+G F + Sbjct: 69 GSD-VSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAVEMPNNQGAQQILYTRNGAFTLNSR 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G LV+ G Y + + +Q + I E+G + Q G+ + + + Q +R Sbjct: 128 GELVTLDGFYVLGQNGRIVLQNGGQVRI---DEQGNVYQDGRFVDRLRVVDFQDKQ-LLR 183 Query: 172 R------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + E +S +IP SG ++ G+LE SN NS+ EM MI++ + + + Sbjct: 184 KVGNNLFEADALSQSIP------FSGKIIQ-GYLEGSNVNSVQEMVNMINVLRAYEANQK 236 Query: 226 LIDENEKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 237 AFVIQDETLQKAVNEIA 253 >gi|332994162|gb|AEF04217.1| flagellar hook protein FlgE [Alteromonas sp. SN2] Length = 458 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 42/161 (26%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIK 49 SFNI L+ A ++ L A+N++N +TVGF+ + +F +V G + Sbjct: 2 SFNIALSGVAAAQKDLDVTANNIANVNTVGFKESRAEFGDVYATSLLAGSKTKVGDGVLT 61 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRF 106 D+ Q+ S GS T T LD A+ G+ +FA E+ R TR G+F Sbjct: 62 QDVAQQFS------------QGSLQFTNTALDLAITGNGFFATVPDETSRDFSFTRAGQF 109 Query: 107 KVTDDGSLVSASGK----YPVLDMASV---------PIQIP 134 K+ DD +V+++G +PV ++ P+QIP Sbjct: 110 KLDDDNYVVNSNGDLLLGFPVNSDSTSSSVALSTTEPVQIP 150 >gi|257457573|ref|ZP_05622740.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] gi|257444959|gb|EEV20035.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] Length = 271 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 37/258 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV-------GAIKN-----DIDQKISF 58 A +++L +A N++N DT ++ F E++ G +KN D+ I Sbjct: 14 AQQKQLDVIAQNLANADTTSYKRDVATHKNFPELLIRRLNDDGVVKNPFGSSDVAPIIGK 73 Query: 59 VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + G E + E GS T T D ALEG +F +E+P G TR+G F V +G L Sbjct: 74 LGLGVELNEIFTEFEQGSLKQTNTASDLALEGKGFFCVETPYGERYTRNGNFTVGVEGYL 133 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--------GKVIATMGLYSVDMS 166 ++ G YPVL +I +D+ + V + GE+ + + + + + + Sbjct: 134 MTKEG-YPVLGENG---RIFLQDQEYKVNQNGEVYARPMTEPDSDSTLADRLKIVTFEND 189 Query: 167 QGFVRRENSGISPNIPPT----PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + ++++ S + P + E V +GF+E SN + EM +MI + + + + Sbjct: 190 R-YLKKHGSSFYLDTPVSGPAIAAEGGDRPVVVQGFVEASNIKVVNEMVRMIEVNRAYEA 248 Query: 223 ITTLIDENEKSMLEAIRN 240 I ++E +M+ + N Sbjct: 249 NQKTI-QSEDTMMSKLWN 265 >gi|327480021|gb|AEA83331.1| flagellar basal body rod protein FlgF [Pseudomonas stutzeri DSM 4166] Length = 246 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 32/215 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 A+N++N T GFR + + +V G D + S + G+ TG +L Sbjct: 23 ANNLANISTTGFRRDFEQARSMQVFG----DSHPARVYAMSERPGTDFTPGTLQETGRDL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+EG W A+++P G R G + G L +A G PV+ PI IP ++++ Sbjct: 79 DVAVEGQGWIAVQAPDGSEAYVRTGSLNIDVLGMLRTADG-MPVMGNGG-PIAIPPEEKV 136 Query: 140 FNVGEKGEISQKG-----KVIAT---MGLYSVDMSQ------GFVRRENSGISPNIPPTP 185 +VG G IS + ++ T + L + D Q G +R ++ P Sbjct: 137 -DVGHDGTISIRALGEDPNIVVTVDRIKLVNPDPQQLEKGADGLIRLKSG--------QP 187 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +E V V GFLE SN N++ EM ++ L+++F Sbjct: 188 VEADGNVRVVSGFLETSNVNAVSEMTSILALSRQF 222 >gi|323975930|gb|EGB71024.1| fagellar hook-basal body protein [Escherichia coli TW10509] Length = 400 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F + +S I TR G F+ DG +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKDGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDSGTL 127 >gi|283850807|ref|ZP_06368093.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. FW1012B] gi|283573730|gb|EFC21704.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. FW1012B] Length = 260 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 108/226 (47%), Gaps = 38/226 (16%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKF------------SEVVGAIKNDIDQKISF-- 58 +A++ ++ T+++N++N +TVGF+ + +F +E VG + ++ Sbjct: 13 VAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTQQVAGTETVGGNRLPTGLQVGLGV 72 Query: 59 -VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ ++ G +TG +LD A++G+ +F ++ + TR G FK+ DG++V+A Sbjct: 73 KPTTVHKFFTQ--GDLQNTGNQLDIAIQGEGFFKVDVNGRDLYTRAGSFKLNQDGTIVTA 130 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-----LYSVDMSQG---- 168 +G YP+ SVP + + E G +S + A G LY+ S G Sbjct: 131 NG-YPLQPAFSVPA----GTKSITITENGHLSCLDQNGAAQGETDIPLYTFINSPGLTAE 185 Query: 169 ----FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + SG + + P D + T+ +GFLE SN + EM Sbjct: 186 GRNLYSTTQASGDAQEVTP---GDQNAGTLAQGFLEMSNVELVDEM 228 >gi|203288202|ref|YP_002223217.1| flagellar hook-basal body complex protein [Borrelia recurrentis A1] gi|201085422|gb|ACH94996.1| flagellar hook-basal body complex protein [Borrelia recurrentis A1] Length = 291 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 60/262 (22%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A RL +A+N++N D G++ +++ F E++ ND D F Sbjct: 19 SGMIAQRHRLEVIANNLANIDLTGYKKDLSVQKAFPEMLIRRTND-DGLYKFPKGYLETA 77 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y S E GS TG LD AL + +F +++P G TR+G F + Sbjct: 78 PVVGKLGTGVEENEIYTSFEQGSLKITGNPLDLALTEEGFFVVQTPEGERYTRNGSFTLG 137 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG----------------- 152 +G L++ G YPV+ I KD F + E+G+I Sbjct: 138 REGILITKDG-YPVIGEKGY---IHIKDNNFKITEQGQIFHNSTFESNPKRLVSESENSW 193 Query: 153 ---KVIATMGLYSVDMSQGFVRR---------ENSGISPNIPPTPLEDLSGVTVKRGFLE 200 +++ + + + + ++ F+++ E SG + NIP S ++ G LE Sbjct: 194 ENYELLDNLKIVNFEKAR-FLKKQGSSLWYSTEISGQAKNIPIN-----SRPKIESGVLE 247 Query: 201 DSNANSMYEMGQMIHLTQKFNS 222 SN N++ EM MI + + + + Sbjct: 248 CSNVNAINEMVSMITVNRVYEA 269 >gi|255261552|ref|ZP_05340894.1| flagellar basal-body rod protein FlgG [Thalassiobium sp. R2A62] gi|255103887|gb|EET46561.1| flagellar basal-body rod protein FlgG [Thalassiobium sp. R2A62] Length = 261 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 122/263 (46%), Gaps = 47/263 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+AAQ + R+ +++N++N +T G+ + +F+++ I + + A+ L Sbjct: 10 GMAAQ---QMRVEVISNNLANMNTTGYNARRAEFADLH---YQQIARPGTINAADGTVLP 63 Query: 68 KEV-----------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 V G+ +TG +LD A+EG+ + + P G TRDG K T Sbjct: 64 TGVQLGLGVRPTAVSMILSQGALSATGGDLDVAIEGEGYLEVTLPNGNAAYTRDGGLKRT 123 Query: 110 DDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYS 162 DG +V++ G +PV VP I IP+ ++ +GEI + +++ L Sbjct: 124 GDGLIVTSDG-FPV-----VPDITIPRDARSISINAEGEIYGYFTDRVEPELLGQFTLSG 177 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G + E S P+I P +D GV +++G+LEDS+ + + E+ +I Sbjct: 178 FTNPRGLEAIGNNLFLETSASGPSIVTEPGQDGLGV-LRQGYLEDSSVDPVKEVTDLIEA 236 Query: 217 TQKF---NSITTLIDENEKSMLE 236 + + + + T D+ SM++ Sbjct: 237 QRGYELNSKVITAADQMLSSMVQ 259 >gi|83589650|ref|YP_429659.1| hypothetical protein Moth_0798 [Moorella thermoacetica ATCC 39073] gi|83572564|gb|ABC19116.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 280 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 21/183 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G + A + ++ ++A++++N +T G++ ++V FS++V G S V+ Sbjct: 9 GASGMRAQQVQVDSLANDIANVNTTGYKQVRVGFSDLVYRPVMEAGMPVEQPQAPGSTVS 68 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G + G+ + TG L+ A++G+ +FA+ + G LTRDG F DG+ Sbjct: 69 LGTGVKVASIVKDFSQGALVQTGEPLNLAIQGEGFFAVVNGAGERFLTRDGNFHRDADGN 128 Query: 114 LVSASGKY---PVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKV--IATMGLYSVDMS 166 +V+ G Y P + VP+ +P + E NV G I+ G+V + + LY+V Sbjct: 129 VVNDGGYYLAIPAGNNQDVPLNLPPEAENINVAADGTITATVNGQVQPLGQIYLYTVSNP 188 Query: 167 QGF 169 G Sbjct: 189 AGL 191 >gi|84624090|ref|YP_451462.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898985|ref|YP_201214.2| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae KACC10331] gi|166712060|ref|ZP_02243267.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzicola BLS256] gi|188576758|ref|YP_001913687.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576950|ref|YP_001913879.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368030|dbj|BAE69188.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521210|gb|ACD59155.1| flagellar basal-body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521402|gb|ACD59347.1| flagellar basal-body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] Length = 261 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 39/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + R+S +++N++NT+T GF+ + F +++ G+ Sbjct: 11 GLDAQ---QTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G +S + GS TG LD + G +F ++ P G TRDG F++ G Sbjct: 68 LGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-MGLYSVD------ 164 LV+ SG YP+ IQ+P+ + +G G IS G+ A +G ++ Sbjct: 128 LVTNSG-YPL----QPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPS 182 Query: 165 --MSQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 S+G FV SG + N TP + G TV+ G LE SN N++ E+ MI + Sbjct: 183 GLQSKGENLFVETTASGPAQN--GTPGLNGLGNTVQ-GALEGSNVNTVEELVSMIETQRA 239 Query: 220 F 220 + Sbjct: 240 Y 240 >gi|327254554|gb|EGE66170.1| hypothetical protein ECSTEC7V_0308 [Escherichia coli STEC_7v] Length = 400 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F + +S I TR G F+ DG +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKDGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDSGTL 127 >gi|254511992|ref|ZP_05124059.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium KLH11] gi|221535703|gb|EEE38691.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium KLH11] Length = 261 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 39/247 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND----I 52 + I A + R+ T+++N++N +T G+ T + +F+++ GA+ + Sbjct: 3 ALKIAATGMTAQQMRVETISNNLANMNTTGYNTRRAEFADLHYQQVARAGAVSASDGTVL 62 Query: 53 DQKISF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 I V + E G +TG++LD A+EG + + P G TRDG K Sbjct: 63 PTGIQLGLGVRPAAVTVQLEQGGLSATGSDLDVAIEGRGYLEVTLPNGQSAYTRDGSLKR 122 Query: 109 TDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEI------SQKGKVIATMGLY 161 + +G +V++ G A P I IP ++ GE+ + +G+++ + Sbjct: 123 SAEGLIVTSDG------FAVAPEITIPDDARSISINAAGEVYAYFDDTAEGQLLGEFTMA 176 Query: 162 SVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 S ++G F E SG +P + P ED G T+++G+LEDS+ +++ E+ ++ Sbjct: 177 SFSNAKGLEAVGSNLFKETEASG-AP-VVGRPGEDGLG-TLRQGYLEDSSVDAVREVTEL 233 Query: 214 IHLTQKF 220 I + + Sbjct: 234 IEAQRGY 240 >gi|197122909|ref|YP_002134860.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter sp. K] gi|220917701|ref|YP_002493005.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter dehalogenans 2CP-1] gi|196172758|gb|ACG73731.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter sp. K] gi|219955555|gb|ACL65939.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter dehalogenans 2CP-1] Length = 266 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 33/254 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVA-------- 60 A + R+ +A+N++NT T GF+ + +F +++ GA D + A Sbjct: 19 AQQLRMDVIANNLANTGTTGFKRQRAEFEDLLSETIHGAEAPDPRGGTAPAALQVGLGVR 78 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 +G + G ++TG LD A+EGD +F ++ P G + TR G F+V G LV+A G Sbjct: 79 TGSTVRNFGQGELLTTGNALDLAIEGDGFFRVQRPDGSLAYTRAGNFRVDAAGRLVTARG 138 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYS------VDMSQ 167 + V+D I P + V G + + + + + L + ++ + Sbjct: 139 E--VVDPE---ITFPPETTRVTVDADGTVRAQVAGREAPQELGRLELCTFPNPGGLEAAG 193 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G + + + + P E +G T+ +GFLE +N ++ EM MI TQ+ + + + Sbjct: 194 GNLLLQTAASGEAVDARPGEQGAG-TLAQGFLEGANVKAVEEMIDMIA-TQRAYELNSRV 251 Query: 228 DENEKSMLEAIRNI 241 + ML+ + ++ Sbjct: 252 VQTADQMLQRLTSL 265 >gi|23092317|gb|AAN08642.1| FlgG [Aeromonas hydrophila] Length = 262 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 48/249 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + ++ ++N++N TVGF+ + + +++ N + S Sbjct: 11 GLDAQ---QTNIAVTSNNLANASTVGFKKSRAIYEDLLYQNINQPGGRSSADTELPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F + D+G+ Sbjct: 68 LGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLNDEGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQ 167 +V+ YP+ IQIP+ + VGE G++S + K V+ + + Sbjct: 128 IVTPGNGYPL----QPEIQIPENAQSVTVGEDGQVSVQLKGDGASQVVGQINTSDFVNAS 183 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI- 214 G FV ++SG P++ +G +K+G LE SN N E+ +I Sbjct: 184 GLQPMGENMFVETQSSG-------APIQGTAGADGLGVIKQGMLETSNVNVTEELVNLIQ 236 Query: 215 -HLTQKFNS 222 H + NS Sbjct: 237 AHRVYEMNS 245 >gi|322378390|ref|ZP_08052845.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS1] gi|322380258|ref|ZP_08054478.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS5] gi|321147295|gb|EFX41975.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS5] gi|321149203|gb|EFX43648.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS1] Length = 286 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 44/260 (16%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---------QKISFVASG------ 62 +L +++N++N +T GF+ V + + +N D Q ++ Sbjct: 33 KLDQISNNLANLNTPGFKRDDVVVGDFLRLYQNYRDKLPLHDQTKQAAKYLNRNLNRVPI 92 Query: 63 --KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + Y +G T ELDFAL + +A+FA+++P+G+ TRDG F + G L + G Sbjct: 93 ITERYTDYSLGPMQKTDNELDFALSDSNAYFAVQTPQGVAFTRDGSFTIDSQGFLSTKEG 152 Query: 120 KYPVLDMASVPIQ-----IPQKDEIFNVG-----EKGEISQKGKVIATMGLYSVDMSQGF 169 Y VL + Q +P N +G+ G +A +G SQ Sbjct: 153 -YHVLSRGGIENQAGIQMLPGSSVSVNPNGAIFFRQGDEEVPGGNLAIVGF----ESQKL 207 Query: 170 VRRENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 +++ I N+ P E +L+ V++ FLE SN N++ EM ++I + + Sbjct: 208 LKK----IGNNLYTYPQEKMAERVELNAPIVRQHFLEKSNVNAVLEMTRLIEANRLVDMY 263 Query: 224 TTLIDENEKSM-LEAIRNIA 242 + ++ + M EAI +A Sbjct: 264 SKVLKTHMDDMHTEAINKLA 283 >gi|302878277|ref|YP_003846841.1| flagellar basal-body rod protein FlgF [Gallionella capsiferriformans ES-2] gi|302581066|gb|ADL55077.1| flagellar basal-body rod protein FlgF [Gallionella capsiferriformans ES-2] Length = 247 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 26/219 (11%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q+ + V++N++NT+T GFR F V + + + +FV +F T Sbjct: 17 QQQAAVSENLANTNTPGFRATLNTF-RAVPLVGEGLPTR-AFVVDSTAGFDFTPAAFQPT 74 Query: 77 GTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP- 134 G LD A+ G W A++ P G TR+G F+++ G L + +G + D S PI IP Sbjct: 75 GRSLDVAVNGTGWLAVQGPDGKEAYTRNGSFQISSSGVLQTRNGLNVLSD--SGPITIPP 132 Query: 135 ------QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ------GFVRRENSGISPNIP 182 KD + +G + V+ + L + D+++ G R ++ +P Sbjct: 133 GTQLTFAKDGTISTVPEGNQATSVVVVGRLKLVNPDVAKLERSGDGMFRMKDGSTAPADA 192 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 T + G LE SN +++ M MI L +KF+ Sbjct: 193 KT--------EIAPGNLEGSNVSTVEMMVNMISLARKFD 223 >gi|157959900|ref|YP_001499934.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] gi|157844900|gb|ABV85399.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] Length = 261 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 32/246 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----NDIDQKI 56 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ ++ +D++ Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 57 SFVASGKEYLSKEV---------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 A + V G ++T +LD A+EG +F +E G + TRDG+F Sbjct: 61 QLPAGLQLGTGTRVAGTQKVFTPGDMLTTNQQLDLAIEGQGFFQIEEANGDVSFTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK------GKVIATMG 159 DG +V++ G P+ VP IQIP + + G +S + + + + Sbjct: 121 YRDSDGLMVTSQG-LPL-----VPNIQIPDEALTVTIASDGIVSAQMAGQADSQELGQIT 174 Query: 160 LYSVDMSQGF-VRRENSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L + G R N +E ++G V++G LE +N N + EM +MI Sbjct: 175 LVNFTNPAGLEARGSNLYRETGASGAAIEGIAGDEALGQVRQGALEGANVNVVEEMVEMI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 STQRAY 240 >gi|58426792|gb|AAW75829.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas oryzae pv. oryzae KACC10331] Length = 341 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 39/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISF----- 58 GL AQ + R+S +++N++NT+T GF+ + F ++ V A + Sbjct: 91 GLDAQ---QTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQ 147 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G +S + GS TG LD + G +F ++ P G TRDG F++ G Sbjct: 148 LGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGQ 207 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-MGLYSVD------ 164 LV+ SG YP+ IQ+P+ + +G G IS G+ A +G ++ Sbjct: 208 LVTNSG-YPLQPG----IQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPS 262 Query: 165 --MSQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 S+G FV SG + N TP + G TV+ G LE SN N++ E+ MI + Sbjct: 263 GLQSKGENLFVETTASGPAQNG--TPGLNGLGNTVQ-GALEGSNVNTVEELVSMIETQRA 319 Query: 220 F 220 + Sbjct: 320 Y 320 >gi|107023951|ref|YP_622278.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia AU 1054] gi|105894140|gb|ABF77305.1| Flagellar basal-body rod FlgG [Burkholderia cenocepacia AU 1054] Length = 262 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 120/276 (43%), Gaps = 47/276 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A A + ++ +++N++NT T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAAAGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y G TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GGLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----I 155 RDG F+ G LV++SG Y VL I +PQ + +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVLPA----ITVPQNAQSLTIGKDGVVSVTQPGSSNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 ++ + + G F +SG +PN+ P + +GV + +G++E SN N + Sbjct: 171 GSLQIATFINPTGLEAKGENLFAETTSSG-APNV-SQPGLNGAGV-LNQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|238796905|ref|ZP_04640409.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC 43969] gi|238719165|gb|EEQ10977.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC 43969] Length = 251 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 29/242 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA AL R V++N++N T GFR F V ++ Q + V Y Sbjct: 11 AANAAL-NRQGVVSNNLANASTTGFRAQLSAFRAV--PVEGPSVQTRTLVTESTPYHDDS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 +G+ TG LD AL D W A+E P G TR G ++ +G L+ G PV+ Sbjct: 68 MGAINQTGRNLDVALPQDGWLAVELPDGGEGYTRAGNIEIDSEG-LLKVRG-LPVIGDGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSV------DMSQG----FVRRE 173 PI +P + E+ + G I+ +G +A +G + D+S G F E Sbjct: 126 -PINVPPQSEL-TIAPDGTITARGAGEEPSALAQVGRLKMVNAKLQDLSHGDDGLFHIAE 183 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDEN 230 SPN L + + G LE SN + + M MI + F+ + + +D+N Sbjct: 184 ---TSPNAGLAALPADQNLQLVPGALESSNVSPVKSMVDMIATARGFDMNMKVISAVDDN 240 Query: 231 EK 232 +K Sbjct: 241 DK 242 >gi|2275161|gb|AAB81413.1| FlgG [Sinorhizobium meliloti] Length = 262 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 35/237 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T G++ + +FS+++ + N +Q I + + Sbjct: 13 AQQLNLE----VIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIVPEGAII 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GS ++TG + D AL G WF +E+P G + TR G F G L Sbjct: 69 GLGVQTSAVRNLHIQGSLVNTGNDYDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQL 128 Query: 115 VSASGKYPVLDMASVP------IQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSV 163 V+ G Y V+ +VP + + +G E+ + G++ + GL Sbjct: 129 VTIDG-YTVVPGVTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQLTIANFVNEAGLEP- 186 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 M + R+ + P I TP D +K+ +LE SN + + E+ +I + + Sbjct: 187 -MGENLFRQTPASGDP-IVGTP-ADPGFAQIKQNYLESSNVDPVKEITDLISAQRAY 240 >gi|238782794|ref|ZP_04626823.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] gi|238716217|gb|EEQ08200.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] Length = 260 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 44/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GA-------IKNDID 53 GL AQ + + +++N++N T GF+ + F +++ GA I + + Sbjct: 11 GLEAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSTEQTTIPSGLQ 67 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 E L + GS T D A++G+ +F ++ G TRDG F++ +G Sbjct: 68 LGTGVRPVSTERLHSQ-GSLNQTSNSKDLAIQGNGFFQIQLADGTTAFTRDGSFQIDQNG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IAT 157 LV++SG YPV I +P E VG G +S Q G++ I Sbjct: 127 QLVTSSG-YPV----QPAITLPPDAETLTVGNDGIVSVTVQGQTAPQQVGQITLSTFIND 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL S+ + R S +PN TP + SG T+++G++E SN N E+ MI T Sbjct: 182 SGLESI--GENLYRETQSSGAPN-ETTPGLNGSG-TLRQGYVETSNVNVAEELVNMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + ML+ + + Sbjct: 237 QRAYEINSKAVSTSDQMLQRLTQL 260 >gi|212637785|ref|YP_002314310.1| flagellar hook protein FlgE [Shewanella piezotolerans WP3] gi|212559269|gb|ACJ31723.1| Flagellar basal body rod protein FlaE [Shewanella piezotolerans WP3] Length = 402 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N+ TVGFR+ + +FS AI N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFS----AIYNGGQAGGVNVMSTS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + S GS + TG +LD ++GD +F L S G + R G F DG + +G Sbjct: 58 QNFSMG-GSLVYTGRQLDMGIQGDGFFVLSSQDGNTMYARAGMFNQDADGFVTDPAGN 114 >gi|261409669|ref|YP_003245910.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261286132|gb|ACX68103.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 293 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 131/290 (45%), Gaps = 65/290 (22%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV-----GAIKNDIDQKI----- 56 + + EQR +TV N++N +T G++ +++ F EV+ G +++ +K+ Sbjct: 10 SGMMTQEQRHNTVTQNIANVNTTGYKATNSVQRSFPEVLVSMIGGNESSNVGRKLGKFNT 69 Query: 57 -----------------------------SFV----ASGKEYLSKEVGSFISTGTELDFA 83 SF A+G+ Y G ++ E+ + Sbjct: 70 GVYAEESISLYTEGALRETNKTTDFALVSSFTVQNPATGQAYPFDASGRYVDENGEVIYR 129 Query: 84 LEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 EG +F +++ G + TR+G F+V+ +G+L+S SG Y VLD + PI + F V Sbjct: 130 PEG--FFTVQNENGDVRYTRNGSFRVSPEGNLLSESG-YQVLDNNNRPIVLTGPASDFTV 186 Query: 143 GEKGEI---SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP-------TPLEDLSGV 192 E+GEI + +G I +G+ V G + RE G+ P TP ++ GV Sbjct: 187 NEQGEIMDAAGRGTGI-ILGVSIVSQPHGLI-REGHGVFRMADPDGEVRFMTPADN--GV 242 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V++GF+E SN + M ++ + + + ++ ++++ +A+ I Sbjct: 243 -VRQGFIEGSNVDPTQSMVELTAALRAYETNQKIVQYYDRTLEKAVNEIG 291 >gi|49082998|gb|AAT50899.1| PA1082 [synthetic construct] Length = 262 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 49/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ L+T+++N++N T GF+ + +F +++ I+ Sbjct: 11 GLSAQ---GMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 LGTGVRVVGTQKIFTP---GSLQTTEQPLDMAVNGRGFFQVLLPDGTVSYTRDGSFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---------------QKGKV 154 DG +V+++G A P I +P + + F VG+ G +S Q Sbjct: 125 DGQIVTSNG------FALEPVIVVPNETQTFTVGQDGTVSVTTTGNAQPQVIGNIQTADF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 I GL ++ + F+ +SG +P + L L TV + LE+SN N + E+ MI Sbjct: 179 INPAGLQAIGNNL-FLETGSSG-APQVGTPGLNGLG--TVAQNTLENSNVNVVEELVNMI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 TTQRAY 240 >gi|332531619|ref|ZP_08407516.1| flagellar basal-body rod protein FlgF [Hylemonella gracilis ATCC 19624] gi|332038982|gb|EGI75411.1| flagellar basal-body rod protein FlgF [Hylemonella gracilis ATCC 19624] Length = 246 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 9/212 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A + R S +++N++N T GFR + V ++ + F G Sbjct: 14 AAQHRQSVLSNNLANVSTNGFRAELSTYRAV--PLRGEGATTRVFALEATAGQRDAPGPS 71 Query: 74 ISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 + TG +LD + +WFA++ G TR+G F+V+ G L +++G P+L PI Sbjct: 72 MRTGRDLDAMPQQSSWFAVQGLDGGEAYTRNGSFEVSPQGVLQTSNG-LPLLSDGGSPIT 130 Query: 133 IPQKDEIFNVGEKGEISQK--GKVIATMGL--YSVDMSQGFVRRENSGISPNIPPTPLED 188 +P+ + + ++G G IS + G+ T+G + Q ++R + G+ + L Sbjct: 131 VPE-NAVVSLGSDGTISAQSAGQPPTTLGRIKLATPTEQDRLKRGDDGLFRPVSGGQLPS 189 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + G LE SN N++ M MI ++F Sbjct: 190 DTNARMDVGVLEGSNVNAVETMVGMIQTARQF 221 >gi|146281773|ref|YP_001171926.1| flagellar basal body rod protein FlgG [Pseudomonas stutzeri A1501] gi|145569978|gb|ABP79084.1| flagellar basal-body rod protein FlgG [Pseudomonas stutzeri A1501] Length = 261 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---DQKISFVASGKE 64 GL+AQ + L+T+++N++N T GF+ + +F +++ I+ + S + SG + Sbjct: 11 GLSAQ---DMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSSQDSELPSGLQ 67 Query: 65 YLSK----------EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + GS +T LD A+ G +F + P G + TRDG F + DG Sbjct: 68 LGTGVRVTGTQKIFTTGSLQTTEQPLDMAINGRGFFQVLLPDGTVSYTRDGSFHLDSDGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 +V+++G L+ A I +P + + F VGE G +S Q I Sbjct: 128 VVTSNGY--ALEPA---IVVPAETQTFTVGEDGTVSVTTLGNAQPQIIGNIQTADFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ S F+ SG +P + L L TV + LE+SN + + E+ MI + Sbjct: 183 GLQAMG-SNLFLETAASG-APQVSTPGLNGLG--TVLQNTLENSNVSVVEELVNMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|238923132|ref|YP_002936645.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] gi|238874804|gb|ACR74511.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] gi|291523979|emb|CBK89566.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629] Length = 266 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 26/173 (15%) Query: 17 QRLSTVADNMSNTDTVGFR-------------TIKVKFSEVVGAIKNDIDQKISFVASGK 63 +R+ +A+N++N+DT GF+ IK+K + G KN + V G+ Sbjct: 17 KRMDVLANNLANSDTYGFKKEGTTSHSFKNELAIKIKDTSNYGLHKN-LGSMTYGVHLGE 75 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-----ESPRGIILTRDGRFKVTDDGSLVSAS 118 Y + GSF T D A+ G +FA+ + TRDG FKV DG LV+A Sbjct: 76 TYTDWDEGSFKVTDNPTDLAIGGKGFFAVAFTDKSGQTSVKYTRDGAFKVNADGYLVTAD 135 Query: 119 GKYPVL-------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 G + + D +E F+V G I+Q +++ T+G+ VD Sbjct: 136 GDHVLNATGALSGDGGEANWVKVDPNEKFSVNSLGYITQNNQLVGTIGVVDVD 188 >gi|120613060|ref|YP_972738.1| Fis family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591524|gb|ABM34964.1| transcriptional regulator, Fis family [Acidovorax citrulli AAC00-1] Length = 246 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 11/224 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR + +A+N++N T GFR F V ++ D + F + G Sbjct: 14 AAAQRQAVLANNLANASTNGFRAEMSTFRSV--PVQGDGSKTRVFALEATSGHVETPGPV 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G+AWFA++ G TR+G F+V +G L +++G VL PI Sbjct: 72 QRTGRNLDAMAVGNAWFAVQGLDGTEAYTRNGSFEVNAEGQLRTSNG-LTVLSDGGGPID 130 Query: 133 IPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 +P ++ +G G ++ Q+ I + L + + ++R + + P+ Sbjct: 131 VPPGADV-TLGSDGTLTARVAGQQATPIGRLKL-ATPTPEDPLKRGDDALFRTASGDPIP 188 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + + G LE SN N++ M MI +++F + L+ E Sbjct: 189 NDPNARLLSGALEGSNVNAVESMVGMIAASRQFEAQMRLLQTAE 232 >gi|254698190|ref|ZP_05160018.1| flagellar hook protein FlgE [Brucella abortus bv. 2 str. 86/8/59] gi|260762637|ref|ZP_05874969.1| flagellar hook protein flgE [Brucella abortus bv. 2 str. 86/8/59] gi|260673058|gb|EEX59879.1| flagellar hook protein flgE [Brucella abortus bv. 2 str. 86/8/59] Length = 396 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D ++G+ +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLTIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|149188067|ref|ZP_01866362.1| flagellar basal body rod protein FlgF [Vibrio shilonii AK1] gi|148838055|gb|EDL54997.1| flagellar basal body rod protein FlgF [Vibrio shilonii AK1] Length = 249 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 39/226 (17%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L A+N++N T GFR D+ Q S A G+ S+ Sbjct: 17 QALQLRANNLANASTPGFRA--------------DLAQARSMQAYGEGMPSRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 E GS ++TG +LD +EG W ++ G LTR+G +V +G LV+ +G V Sbjct: 63 GHNFEQGSVVTTGRDLDVTIEGQGWISVLDKNGKEGLTRNGSLRVDQNGLLVNGNGNL-V 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENS 175 L PI +P +G G +S + +++ + L + D F ++ + Sbjct: 122 LGERGTPITVPIPLRKIEIGRDGTVSVIPQDAPADEMEIVDRIKLTNTDNRSLF--KDTN 179 Query: 176 GISPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ N P S V + G +E SN N++ EM +I L ++F Sbjct: 180 GLFRNKDPQLGYTASANVQLMTGAIEGSNVNAVGEMTSLIDLQRQF 225 >gi|73539451|ref|YP_299818.1| flagellar basal body rod protein FlgF [Ralstonia eutropha JMP134] gi|72122788|gb|AAZ64974.1| Protein of unknown function DUF1078 [Ralstonia eutropha JMP134] Length = 247 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 14/218 (6%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ L+Q+ + V++N++N T FR +V V + + + +F + Sbjct: 12 AKQILDQQ-AAVSNNLANVSTPAFRA-QVNMYRAVPVVGQESPTR-AFTLASTPGADMRA 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G TG LD AL+G+ W +++ G TR G ++ DG + ++SG PV+ Sbjct: 69 GPLTYTGRPLDVALQGNGWLVVQARDGSEAYTRAGSLQIAQDGQVQTSSG-LPVMGDGG- 126 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS------VDMSQGFVRRENSGISPNIP- 182 P+ +P ++ +G G I+ +G A+ GL V+ + R + G+ P Sbjct: 127 PLSVPPGSQV-TIGSDGTITARGPGEASAGLAQVGKLRVVNPPADSIARGDDGLFRLRPG 185 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 PLE V V G +E SN N M MI ++F Sbjct: 186 AQPLEADPTVRVVSGAIEGSNVNPTEAMVDMIANARRF 223 >gi|114562343|ref|YP_749856.1| flagellar basal body rod protein FlgF [Shewanella frigidimarina NCIMB 400] gi|114333636|gb|ABI71018.1| flagellar basal-body rod protein FlgF [Shewanella frigidimarina NCIMB 400] Length = 247 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 27/217 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF+ V+ + + + S + S + G +TG Sbjct: 19 LAVSANNLANANTDGFKADMVQARSMQAFGEGLPTRVFSMMESPGSNFNG--GPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP--- 134 +LD A++GD W A+++ G TR G K+ G L+++S + PV+ AS PI +P Sbjct: 77 DLDIAVKGDGWLAVQAADGSEGYTRAGSLKIDSTGMLLNSSNR-PVMG-ASGPIVLPIPV 134 Query: 135 -----QKDEIFNVGEKGEISQKGKVIATMGLYS------VDMSQGFVRRENSGISPNIPP 183 + I +V +G ++ + +A + L + + G R G +PN P Sbjct: 135 EKIEISANGIISVRPQGATAEVIEEVARIKLVNPGNENLMRGEDGLFRLIAGGNAPNDP- 193 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 GV V+ G +E SN NS++EM MI + +++ Sbjct: 194 -------GVQVESGAVEGSNVNSVHEMVAMIDIQRQY 223 >gi|222530299|ref|YP_002574181.1| flagellar basal body rod protein [Caldicellulosiruptor bescii DSM 6725] gi|222457146|gb|ACM61408.1| flagellar basal body rod protein [Caldicellulosiruptor bescii DSM 6725] Length = 255 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 122/252 (48%), Gaps = 26/252 (10%) Query: 10 AAQLALEQRLSTV-ADNMSNTDTVGFR----TIKVKFSEVVGAIKNDI---DQKISFVAS 61 A+ + L Q+L + A+N++N T GF+ ++ + +V I + + D I +++ Sbjct: 9 ASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKVSSPDNAIGYMSL 68 Query: 62 GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESPRG-----IILTRDGRFKVTDD 111 G + +S+ V G +I T L+ A++GD +F +E P I TR+G F + Sbjct: 69 GAD-VSRIVSDFSQGLYIKTDEPLNLAIKGDGFFTIEVPENQGAQQIFYTRNGAFTLNSR 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS-QGFV 170 G LV+ +G Y + + +Q + I E+G + Q G+++ + + VD + + Sbjct: 128 GELVTLNGFYVLGQNGRIVLQNGGQVRI---DEQGNVYQNGRIVDRLRV--VDFQDKSLL 182 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R+ + + SG V +G+LE SN NS+ EM MI + + + + Sbjct: 183 RKVGNNLFEADAAVQQIPFSG-KVLQGYLEGSNVNSVQEMVNMISVLRAYEANQKAFVIQ 241 Query: 231 EKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 242 DETLQKAVNEIA 253 >gi|217076897|ref|YP_002334613.1| flagellar basal-body rod protein FlgG [Thermosipho africanus TCF52B] gi|217036750|gb|ACJ75272.1| flagellar basal-body rod protein FlgG [Thermosipho africanus TCF52B] Length = 261 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 31/232 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISFVASGKE 64 A + +L T+++N++N DT G++ +K +F +++ +N + +V G + Sbjct: 14 AQQFKLDTLSNNIANVDTAGYKKVKSEFQDLLYDYSKNAGAATAQNSLHPTGLYVGHGTK 73 Query: 65 YLSKEV-----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 LS G+ TG LD A+ GD +F ++ G I TRDG+FK+ +G +++++ Sbjct: 74 -LSATTRIFTQGNLERTGNSLDLAISGDGFFQIQLQDGRIAYTRDGQFKIDGNGRIITSN 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGF-VRR 172 G ++ S I +PQ ++ G ++ Q G + + T+ L G Sbjct: 133 G-----NLLSPNIVVPQNAVSLSISPDGIVTAELQDGTLQNLGTITLVRFINPSGLKAIG 187 Query: 173 ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +N + TP+E +G ++ +G++E SN + + EM MI + + Sbjct: 188 DNLFLETPASGTPVEGTAGQDGFGSILQGYVEKSNVDIVKEMVDMISAMRAY 239 >gi|84514831|ref|ZP_01002194.1| Flagellar distal rod protein [Loktanella vestfoldensis SKA53] gi|84510990|gb|EAQ07444.1| Flagellar distal rod protein [Loktanella vestfoldensis SKA53] Length = 261 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 120/262 (45%), Gaps = 42/262 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL AQ + R+ +A+N++N +TVGF++ +V F ++ +K Sbjct: 11 GLNAQ---QTRMQVIANNLANLNTVGFKSDRVNFESLLYQVKRSGGDQTSEGTALTSALA 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K Y G ++T D A+EG +F + P G + TR+G F + Sbjct: 68 LGTGVRAVNTQKLYTQ---GGMVNTDNSFDLAIEGQGFFQVLMPDGRVGYTRNGSFSRSA 124 Query: 111 DGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 DG++ +ASG Y V +P + I Q D + +V + GE ++ + + + + S Sbjct: 125 DGTMTTASG-YVVQPEIRIPADATEVNISQ-DGLVSVRQAGE--EEAQEVGQLTIASFAN 180 Query: 166 SQG-------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +G FV + + +P + + L + +G LE SN N + ++ +MI TQ Sbjct: 181 PRGLQPIGESFVTQTLASGAPTVAAPQAQGLG--KLMQGALEGSNVNVVQQLVEMIE-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + +++ + M+ I N Sbjct: 238 RAYEVSSKAISSSDEMMRYISN 259 >gi|317050615|ref|YP_004111731.1| flagellar basal-body rod protein FlgG [Desulfurispirillum indicum S5] gi|316945699|gb|ADU65175.1| flagellar basal-body rod protein FlgG [Desulfurispirillum indicum S5] Length = 262 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 40/238 (16%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------------GAIKNDIDQKISF-- 58 +A + + +++N++N +T GF+ +V+F +++ I + +++ Sbjct: 13 MAQQTHIDNISNNLANVNTGGFKKSRVEFQDLMYQTIKPAGASTAAGITRPVGEQLGLGV 72 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSA 117 +G + + GS I TG +LD +E D +F ++ P G TR+G F ++G +V+ Sbjct: 73 KVAGITKMHTQ-GSIIQTGNQLDMTIEKDGYFQIQMPDGTTGYTRNGAFTKNNNGEIVTV 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATMGLYS 162 G + IQIP VG G +S + K I GL S Sbjct: 132 EGF-----LLEPGIQIPDDAVEIYVGRDGTVSVQIGNQNQMQELGQITTAKFINPAGLES 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V G + +E S P ED G + +GFLE SN + EM MI + + Sbjct: 187 VG---GNIFKETSASGAPQVGIPGEDSFGA-IAQGFLEQSNVQLVEEMVNMISAQRAY 240 >gi|302390533|ref|YP_003826354.1| flagellar basal-body rod protein FlgG [Thermosediminibacter oceani DSM 16646] gi|302201161|gb|ADL08731.1| flagellar basal-body rod protein FlgG [Thermosediminibacter oceani DSM 16646] Length = 268 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 35/262 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------KNDIDQKISF 58 + LA + + +++N++N +T G++ +V+F +++ N + ++ Sbjct: 10 SGMLAQQLNVDVISNNLANVNTTGYKKSRVEFKDLLYETLRRPDVFQPGQGNPVGLQVGH 69 Query: 59 ---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT---DD 111 AS + ++ G+ TG D A+EG+ +F +E P G TRDG FKV+ DD Sbjct: 70 GVRPASTTRFFTE--GNLQQTGNTFDLAIEGEGFFVVERPDGSRAFTRDGSFKVSIDGDD 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---GKV--IATMGLYSVDMS 166 LV++ G Y VLD I IP+ N+ G I+ + G + I T+ L Sbjct: 128 RYLVTSEGYY-VLDTDEDYISIPEDLTDINISANGTITGRDADGNIEEIGTIALARFLNP 186 Query: 167 QGFVRRENSGISP-------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 +G + N+ + P E G T+ +GFLE SN + EM +I + Q+ Sbjct: 187 EGLLAVGNNLFEQTAASGEYQLKEDPNEPGFG-TILQGFLEMSNVQVVDEMVNLI-VAQR 244 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I T + ML N+ Sbjct: 245 AYEINTKAIQTADEMLGQANNL 266 >gi|299538000|ref|ZP_07051286.1| flagellar basal-body rod protein [Lysinibacillus fusiformis ZC1] gi|298726582|gb|EFI67171.1| flagellar basal-body rod protein [Lysinibacillus fusiformis ZC1] Length = 277 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 49/268 (18%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVASGKEYLSKEVGSF 73 ++R + +N+SN +T GF+ + + + I + + +G EY+S +VG+ Sbjct: 16 QRRTELLTNNLSNANTPGFKADQSTIRSFPDMLMSSIGKTNAPAHQQAGAEYMS-QVGA- 73 Query: 74 ISTGTEL-------------------DFAL------------EGDAWFALESPRG-IILT 101 ++TGT L D AL G +F LE P G T Sbjct: 74 LNTGTYLQETLPNYIQGQIYNTDFTTDMALINGNLPQNEDGVTGSIFFRLEHPAGGEAYT 133 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL- 160 R+G F + G LV+ G Y VL+ A IQ+P D F + E G I + +A +G+ Sbjct: 134 RNGNFTLDGQGYLVNGQGLY-VLNDAGQRIQLPNDD--FRLDESGAIFVNNQQVARVGVS 190 Query: 161 --YSVDMSQ----GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + +M Q G +R EN N+P + T+++ FLE SN +S M ++ Sbjct: 191 FATNPNMLQKQDNGLIRTENG---ENLPTAYGANGVSFTLRQNFLEGSNVDSGRTMTDLM 247 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + F + ++ ++SM +A+ I Sbjct: 248 TAYRAFEANQKVLQAYDRSMEKAVNEIG 275 >gi|152997581|ref|YP_001342416.1| flagellar basal-body rod protein FlgF [Marinomonas sp. MWYL1] gi|150838505|gb|ABR72481.1| flagellar basal-body rod protein FlgF [Marinomonas sp. MWYL1] Length = 247 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 16/215 (7%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 A+N++N T GFR+ + + +V G D + + G I TG L Sbjct: 23 ANNLANVSTTGFRSDFEQARSMQVYG----DYHPSRVYAMTENPATRYTQGDMIQTGRNL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ GD + A+ G TR G F++ G LV+ G PV + PI +P D I Sbjct: 79 DVAVAGDGFIAVYDESGQEAYTRAGDFQINAAGQLVTGRG-LPVAGVGG-PIFLPPADSI 136 Query: 140 FNVGEKGEIS---QKG---KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 N+ G IS Q G +V + V+ + +R+E G+ L+ V Sbjct: 137 -NITADGSISIVPQGGANNEVAVLNQIKLVNPDKQNLRKEEDGLIHTRDGQALDADPNVQ 195 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + GF+E SN N++ EM +++L ++F ++D Sbjct: 196 LVSGFIEGSNVNAVEEMTHIMNLARRFEMNVKMMD 230 >gi|330501139|ref|YP_004378008.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina NK-01] gi|328915425|gb|AEB56256.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina NK-01] Length = 261 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 35/247 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 GLAAQ ++ +S VA+N++N +T GF++ +V F ++ AI+ N + I Sbjct: 11 GLAAQ---DKAMSAVANNLANVNTNGFKSDRVVFEDLFYAIELQPGAQADEVNTVPSGIQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V GS +TG +D A+ G +F +E+P G I T +G+ ++ +G Sbjct: 68 LGSGVRVAGTQKVFTEGSIQTTGQPMDLAIIGAGFFQVEAPNGDIYYTENGQLQLNAEGM 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI----------SQKGKV--IATMGLY 161 +V++ G P+ + I++P F VG G + S+ G++ + Sbjct: 128 IVNSQG-LPL----TPAIEVPAGSSRFTVGSDGIVTAVLAGDTLPSELGQITLVNFTNPG 182 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 ++ G + RE + P D G +K+G LE SN + M MI + + + Sbjct: 183 GLEALGGNLYRETVASGEPVEGVPGADGLG-NLKQGVLEGSNVQVVEAMVAMISIQRAYE 241 Query: 222 SITTLID 228 + ++D Sbjct: 242 ANAKVLD 248 >gi|310659662|ref|YP_003937383.1| flagellar component of cell-distal portion of basal-body rod [Clostridium sticklandii DSM 519] gi|308826440|emb|CBH22478.1| flagellar component of cell-distal portion of basal-body rod [Clostridium sticklandii] Length = 266 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 48/248 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKND----------ID 53 G+ AQ + + T+++N++N +T GF+ K +F +++ ++ ND I Sbjct: 10 GMRAQ---QLNMDTISNNLANVNTTGFKKQKTEFKDLLYTSMKSVSNDPELGEPVNLQIG 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTD 110 + VA+ + + + G+ T D ALEG +F +E+P G + TRDG FK + Sbjct: 67 HGVRPVATSRLFTN---GNLEKTENPTDVALEGPGFFVVENPTGNPEQLFTRDGNFKFSV 123 Query: 111 DG---SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 DG +LV++ G Y VL I++ F++ E G ++ + + + L + + Q Sbjct: 124 DGDVMTLVTSQG-YTVLSTDDDVIEVESTMRNFSISEGGMVTAQDEAGEIVELGEIQIVQ 182 Query: 168 GFVRRE--------------NSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEMGQ 212 F+ E NSG P ED S T + +GFLE SN + EM + Sbjct: 183 -FINPEGLQAMGNNFFSLTANSG-----EPVIEEDESKDTKLYQGFLETSNVQLVDEMVR 236 Query: 213 MIHLTQKF 220 MI + + Sbjct: 237 MIMAQRAY 244 >gi|289208116|ref|YP_003460182.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. K90mix] gi|288943747|gb|ADC71446.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. K90mix] Length = 262 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 115/258 (44%), Gaps = 45/258 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ R+STV++N++N +T GF+ + F +++ GA DQ++ Sbjct: 11 GLDAQ---HTRMSTVSNNLANVNTTGFKKDRAVFEDLIYQTVRQPGAQATQ-DQQLPSGL 66 Query: 59 -VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 + +G +S E G+ T LD A+EG +F + P G I TRDG F++ DG Sbjct: 67 QIGTGVRAVSTEKMFTQGNLQQTDNSLDVAIEGRGFFQVLMPNGDIGYTRDGSFQLNADG 126 Query: 113 SLVSASGKYPVLDMASVP---------------IQIPQKDEIFNVGEKGEISQKGKVIAT 157 +V ++G YP+ VP QIP + E +G Q + Sbjct: 127 EVVMSNG-YPLQPGLFVPPDTQSLAIGKDGTVTAQIPGQAEPVELGNI----QLADFVNP 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHL 216 GL ++ + F SG++ P L+G T+ +G LE SN N E+ MI Sbjct: 182 AGLQAIGENL-FQETAASGVAQQAQP----GLNGTGTLVQGSLETSNVNIAEELVNMIET 236 Query: 217 TQKFNSITTLIDENEKSM 234 + + + I ++S+ Sbjct: 237 QRAYEVNSKAISAADQSL 254 >gi|167576663|ref|ZP_02369537.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis TXDOH] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 12/207 (5%) Query: 19 LSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 ++ A+NM+N T GFR +++ S+ V D ++ A+ L+ E G TG Sbjct: 19 IAVHANNMANAQTDGFRAELEMAESQAVRGYGYDSRHLLNPRANA---LNGEAGVVADTG 75 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ELD A+ G +F +++ G TR G F++ DG+L + +G+ PV+ PI +P+ Sbjct: 76 RELDAAINGSGYFTVDTQGGEAYTRAGNFEIDADGAL-TVNGR-PVIGEGG-PIVLPEFT 132 Query: 138 EIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + +GE G IS +V A L VD + + +G+ PL + V Sbjct: 133 SL-RIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAGLLVARDGQPLPVSNEVK 191 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKF 220 V G LE SN + + EM + L + F Sbjct: 192 VLGGHLERSNVSPVEEMIATMSLNRAF 218 >gi|260774939|ref|ZP_05883840.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC BAA-450] gi|260609194|gb|EEX35352.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC BAA-450] Length = 249 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 13/213 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 Q + A+N++N T GFR + + + A + + ++ F + + + + GS I+T Sbjct: 17 QAMQLRANNLANVSTTGFRA-DLAQARSMQAYGDGMPSRV-FSMTERPGHNFQQGSVITT 74 Query: 77 GTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G +LD ++ W ++ G LTR+G KV +G L + +G VL PI IP Sbjct: 75 GRDLDVTIQDQGWISVLDNTGKEGLTRNGNMKVDVNGMLTTGNGNL-VLGETGAPITIPI 133 Query: 136 KDEIFNVGEKGEIS--QKG------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 VG G IS +G +++ + L S + +Q + N P E Sbjct: 134 PISKIEVGTDGTISVVPQGAPADAIEIVDRIKLTSTN-NQSLYKDVNGLFRSKDPNAAYE 192 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +GV + G LE SN N++ EM +I L ++F Sbjct: 193 MDAGVKLLTGALEGSNVNAIGEMTNLIDLQRQF 225 >gi|119503646|ref|ZP_01625729.1| hypothetical protein MGP2080_03865 [marine gamma proteobacterium HTCC2080] gi|119460708|gb|EAW41800.1| hypothetical protein MGP2080_03865 [marine gamma proteobacterium HTCC2080] Length = 261 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 35/239 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISF-- 58 GL AQ + +++T+++N++N T GF+ +V F ++ VGA ++ D + Sbjct: 11 GLDAQ---QTKMATISNNLANAGTNGFKRGRVIFEDLLYQNVRQVGA-QSSQDTVLPSGL 66 Query: 59 -VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 V +G ++ E G+ T LD A++G + + P G TRDG F++ D G Sbjct: 67 QVGTGARVVATERLFTQGNLSQTDNPLDLAIQGRGFVEVLMPDGSQGFTRDGSFQINDQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-MGLYS----VDM 165 +V+A+G Y V PI IPQ ++ G +S Q G AT +G+ V+ Sbjct: 127 VMVTAAG-YQV----QPPITIPQDALSISIAPDGTVSVQQPGTPQATQVGVIQLTDFVNP 181 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S R EN + PL G+ T+++GF+E SN N + E+ MI + + Sbjct: 182 SGLQARGENLFLETGASGAPLPGNPGLNGLGTLQQGFVEGSNVNVVEELVNMIETQRAY 240 >gi|188587424|ref|YP_001918969.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352111|gb|ACB86381.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 280 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 120/266 (45%), Gaps = 43/266 (16%) Query: 16 EQRLSTV-ADNMSNTDTVGFR---TIKVKFSEVVGAIKND-----------IDQKISFVA 60 +QR+ V ++NM+N +T G + ++K +FS ++ + ND +D + Sbjct: 15 QQRVQEVKSNNMANLNTTGHKRDMSVKSEFSNMLISRINDPENIGPPQSPQVDNRPYIGE 74 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF-----KV 108 G L E G TG LD LEGD +F + P G TR G + Sbjct: 75 LGTGVLLDETVKDFSQGPLKETGNTLDLGLEGDGFFTVNGPDGEEYFTRSGALTLSYDET 134 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVD 164 +++ +LV+ G PVL + IQ+ + +I V E G I Q + ++I + L + + Sbjct: 135 SEEATLVTLQGD-PVLGEEGI-IQLSGEKDI-TVTENGAIYQGQDDEAELIDNLALVNFE 191 Query: 165 MSQGFVR--------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 QG R E SG +P ED ++V +G +E SN NS+ EM MI+ Sbjct: 192 NPQGLARYGDNLLEQTEESG-APQELDLDGEDFGILSVHQGKIESSNVNSVDEMTGMINA 250 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 + + S I ++ ++ A+ +I Sbjct: 251 LRAYESNQRAIQGHDDTLERAVNDIG 276 >gi|297538897|ref|YP_003674666.1| flagellar basal-body rod protein FlgF [Methylotenera sp. 301] gi|297258244|gb|ADI30089.1| flagellar basal-body rod protein FlgF [Methylotenera sp. 301] Length = 246 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 13/234 (5%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ LEQ+ +T A N++N + GF+ +V V I + + +FV Sbjct: 12 AKHILEQQ-ATTAHNLANVTSTGFKA-QVDSFRAVPVISEGLATR-AFVVDSTVGADFNP 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ ST +LD A++G W +++ G TR+G KV+++G L +A+G + D Sbjct: 69 GAIQSTNRDLDVAIQGKGWLSIQRADGSEGYTRNGSLKVSENGILQTATGLTVLGDGG-- 126 Query: 130 PIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 PI IP D +VG+ G +S + G L V+ + + R G+ Sbjct: 127 PISIP-PDVAVSVGKDGTVSTVANGAKPGASNVLGRLKLVNPPEADLVRAEDGLFVTSNG 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P E + V V G LE SN N + M MI L ++F + L+ E + +A Sbjct: 186 NPAEVDANVHVVGGALESSNVNVIDAMVSMISLARQFETQMKLMQSAENNANKA 239 >gi|254460299|ref|ZP_05073715.1| flagellar proximal rod protein FlgF [Rhodobacterales bacterium HTCC2083] gi|206676888|gb|EDZ41375.1| flagellar proximal rod protein FlgF [Rhodobacteraceae bacterium HTCC2083] Length = 253 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 22/235 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +I L + + L+ + NM+N + G+R V E D + F Sbjct: 1 MDRNIHIALNSMRNISSDLTVNSQNMANVNVPGYRADLVVTREAQALQSFDEFRSRVFSR 60 Query: 61 SGKEYL-SKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 GK L S E G+ +TG +D A+ G+ +F + G L+R G F + ++ Sbjct: 61 QGKGTLFSAEQGAMQNTGEPMDAAIRGEGYFMIAPATGGDPALSRRGDFGFDLERFIIDG 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----------GKVIATMGLYSVDMS 166 +G +LD PIQ+P+ I V E G+I + G +IAT V +S Sbjct: 121 AGSR-LLDTDMNPIQLPEARRIV-VEETGQIQVELFGAPEGTFVPGPIIATTSAADVKLS 178 Query: 167 QGFVRRENSGISP-NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + +S I P N P P D + +GFLE SN N++ + + I +KF Sbjct: 179 KSI----DSHIRPSNGDPLPEPD-QRARISQGFLESSNVNTITALVKNIESQRKF 228 >gi|118581835|ref|YP_903085.1| hypothetical protein Ppro_3435 [Pelobacter propionicus DSM 2379] gi|118504545|gb|ABL01028.1| protein of unknown function DUF1078 domain protein [Pelobacter propionicus DSM 2379] Length = 259 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 19/152 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDID-------QKISFV 59 G+ LA + ++ + +N++N +TVGF+ + FS+++ I ND QK+ + Sbjct: 10 GVTGLLANAEDINVIGNNLANVNTVGFKGSRTLFSDLLSTNIGNDSQIGRGTQIQKVDNI 69 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 S + + E+ S D A++G ++F LES G +TR G F++ +DG LV+ Sbjct: 70 ISQSSFDTTEITS--------DLAIQGSSFFLLESTTGSRYVTRAGAFRMNEDGYLVNPD 121 Query: 119 GKYPVLDMASVPIQI-PQKDEIFNVGEKGEIS 149 G Y VLD A I + P I ++ +GEI+ Sbjct: 122 G-YFVLDEAGARILLDPAGTTITSIDSEGEIT 152 >gi|120554034|ref|YP_958385.1| flagellar basal body rod protein FlgF [Marinobacter aquaeolei VT8] gi|120323883|gb|ABM18198.1| flagellar basal-body rod protein FlgF [Marinobacter aquaeolei VT8] Length = 250 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 121/278 (43%), Gaps = 65/278 (23%) Query: 1 MQTSFNIGL--AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 M + IG+ A Q L QR A+N++N +T GF K D Q S Sbjct: 1 MDKALYIGMSGAKQNMLAQRAH--ANNLANVNTTGF--------------KKDFAQARSM 44 Query: 59 VASGKEYLSKEV------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 G+ + ++ G+ + TG +LD A++G W A+++ G + TR G Sbjct: 45 PVFGEHHPTRAYAMTERPGTDLSPGALMETGRKLDVAVDGGGWLAVQNNLGEEVFTRTGS 104 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG----LY 161 +V +G + ASG+ VL P+ +P D + VG G IS ++ G L Sbjct: 105 LQVDVNGLVRLASGEL-VLGNGG-PVALPPFDNL-QVGSDGTIS----IVPVGGPPDQLV 157 Query: 162 SVDMSQ--------------GFVRRE-NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 VD + GF+RR+ + + PP + + V GFLE SN N+ Sbjct: 158 EVDRLKLVNPPADALEKGLDGFIRRKPDQALDGPEPPD-----AAMRVATGFLESSNVNA 212 Query: 207 MYEMGQMIHLTQKFN---SITTLIDENEKSMLEAIRNI 241 + EM + L++++ + T +EN ++ ++N+ Sbjct: 213 VEEMISNLQLSRQYEMQVKVMTTANENSEATARLLQNL 250 >gi|332305616|ref|YP_004433467.1| flagellar basal-body rod protein FlgF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172945|gb|AEE22199.1| flagellar basal-body rod protein FlgF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 247 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 27/228 (11%) Query: 9 LAAQLALEQRLSTV--ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +AA A + L T A+N++NT T GFR +++ + + A + + ++ F + Sbjct: 7 IAASGAKQDLLGTAVRANNLANTQTTGFRA-QLEQARSMPAFGDGLPTRV-FSMTENPAN 64 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 + E G+ I T LD A++G+ W ++ G +R+G +++ DG L +SG V + Sbjct: 65 NFEGGAMIQTERNLDVAIQGEGWLSVLDANGAEAYSRNGSLQISADGQLQDSSGNSIVGE 124 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMG--------LYSVDMSQGFVRR 172 V + IP + N+ G IS + + V+ +G L +V+ + R Sbjct: 125 FGPVFLPIPLSN--INIAGDGTISVRPQGAPETVLEEVGRLKLVNPDLDNVERGNDGLFR 182 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G PT V+++ G LE SN N + EM MI L + + Sbjct: 183 QKDGELAQFDPT-------VSIRNGMLEGSNVNPVEEMVDMISLQRHY 223 >gi|329928728|ref|ZP_08282577.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] gi|328937509|gb|EGG33927.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] Length = 296 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 65/290 (22%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV--------------------- 45 + + EQR +TV N++N +T G++ +++ F EV+ Sbjct: 13 SGMMTQEQRHNTVTQNIANVNTTGYKATNSVQRSFPEVLVSMIGGNESSNAGRKLGKFNT 72 Query: 46 -------------GAIK-----NDIDQKISFV----ASGKEYLSKEVGSFISTGTELDFA 83 GA++ D SF A+G+ Y G ++ E+ + Sbjct: 73 GVYAEESISLYTEGALRETNKTTDFALVSSFTVQNPATGQAYPFDASGRYVDENGEVIYR 132 Query: 84 LEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 EG +F +++ G + TR+G F+V+ +G+L+S SG Y VLD + PI + F V Sbjct: 133 PEG--FFTVQNENGDVRYTRNGSFRVSPEGNLLSESG-YQVLDNNNRPIVLTGPASDFTV 189 Query: 143 GEKGEI---SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP-------TPLEDLSGV 192 E+GEI + +G I +G+ V G + RE G+ P TP ++ GV Sbjct: 190 NEQGEIMDAAGRGTGI-ILGVSIVSQPHGLI-REGHGVFRMADPDGEVRFMTPADN--GV 245 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V++GF+E SN + M ++ + + + ++ ++++ +A+ I Sbjct: 246 -VRQGFIEGSNVDPTQSMVELTAALRAYETNQKIVQYYDRTLEKAVNEIG 294 >gi|221069320|ref|ZP_03545425.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni KF-1] gi|220714343|gb|EED69711.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni KF-1] Length = 260 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 40/237 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ---------KIS 57 A + +L ++ N++N T G++ F +++ G+ + +Q + Sbjct: 14 AQQTQLDVISHNLANVSTTGYKRANAVFEDLIYQNLRQSGSQTTEQNQLPTGLHLGLGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ + +L GS + LD A+ G+ +F + P G I TRDG F+V G LV+ Sbjct: 74 TVATSRNFLQ---GSLQQSSNALDVAINGNGFFEVNMPDGTIAYTRDGSFEVDSQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVDMSQGFV---- 170 +SG PV + I IPQ ++ G +S G+ A + ++ MSQ F+ Sbjct: 131 SSG-LPVAN----GITIPQGATKVSISHDGVVSVTMPGQA-APQQVGNIAMSQ-FINAAG 183 Query: 171 ---RRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 R +N + P + G T+++G+LE SN N + E+ MI + + Sbjct: 184 LEPRGQNLYVETASSGQPQQGTPGTNGLGTIQQGYLEASNVNVVQELVTMIQTQRAY 240 >gi|30248322|ref|NP_840392.1| flagellar hook protein FlgE [Nitrosomonas europaea ATCC 19718] gi|30138208|emb|CAD84216.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 410 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 7/118 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFVA 60 F GL+ A +L +N++N +TVGF+ + +F++V +G +N I A Sbjct: 3 FQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFADVYANALGGGRNQIGIGTQLAA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +E+ G+ T LD A+ G+ +F +++ I TR+G+F + DG LV+AS Sbjct: 63 VAQEF---NQGNVTPTNNPLDVAITGNGFFRMDNNGSISFTRNGQFHLDKDGFLVNAS 117 >gi|295678057|ref|YP_003606581.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1002] gi|295437900|gb|ADG17070.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1002] Length = 252 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 24/237 (10%) Query: 14 ALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 ALEQ+ + VA+N++N T GFR + + F + G+ ND + +FV S Sbjct: 15 ALEQQ-AIVANNLANASTTGFRAQLETYRAVPMSFGD--GSTINDNTTR-TFVLSSTPGA 70 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G TG LD A++G W ++++ G TR G + ++G LV+A+ + VL Sbjct: 71 DFTPGPIQQTGNPLDVAIQGAGWLSVQTADGNEAYTRAGNLHIDENGQLVNATNQV-VLG 129 Query: 126 MASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISP 179 P+ +P +I +G+ G ++ V+ L V+ + R + G+ Sbjct: 130 NGG-PVSVPPGAQI-TIGKDGTVTALTPGDPPTAVVTIDQLKLVNPDPQSITRGDDGLFR 187 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + VT+ LE SN N + M MI ++F T L+ D+N++S Sbjct: 188 TADGNPADADPTVTLAPASLEGSNVNPVSAMVSMITNARQFQMQTQLLQNADKNDQS 244 >gi|104782840|ref|YP_609338.1| flagellar basal body rod protein FlgG [Pseudomonas entomophila L48] gi|95111827|emb|CAK16551.1| Flagellar basal-body rod protein flgG [Pseudomonas entomophila L48] Length = 261 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 118/259 (45%), Gaps = 47/259 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+ +++N++N T GF+ + +F +++ IK Sbjct: 11 GLSAQ---DTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + G +T LD A+ G +F + P G + TRDG F + Sbjct: 68 VGTGVRVVGTQKNF---QTGGLQNTENPLDMAINGRGFFQILQPDGTVSYTRDGTFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+A G L+ A I +P + + F VG+ G +S Q I Sbjct: 125 DGQIVNADGF--ALEPA---IVVPPEAQTFTVGQDGTVSITTAGNPAAQVIGNLQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ + F+ SG +P I TP + G ++++ LE+SN +++ E+ MI Sbjct: 180 NPAGLQAIGNNL-FLETAASG-APQI-GTPGLNGFGTSLQK-TLENSNVSTVEELVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K + Sbjct: 236 TQRAYEMNSKVISAADKML 254 >gi|167579489|ref|ZP_02372363.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis TXDOH] Length = 253 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 19/238 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEY 65 A +LEQ+ S VA+N++N T GFR F V G+ D ++ S Sbjct: 12 ATQSLEQQ-SVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATTRTYTLSSTPG 70 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG LD A++G W ++ P G TR G V +G LV+A+ PV+ Sbjct: 71 ADFAPGPIERTGNPLDVAIQGPGWLSVMLPDGSEAYTRAGNLHVDQNGQLVTAN-NLPVV 129 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGIS 178 P+ +P ++ +G G +S +A + L V+ ++R + G+ Sbjct: 130 GNGG-PLAVPPNSQL-TIGADGTVSALMPGDPPTAVAMIDQLKLVNPDPATMKRGDDGLF 187 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F T LI D+NE++ Sbjct: 188 RTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSADQNEQA 245 >gi|120613059|ref|YP_972737.1| hypothetical protein Aave_4423 [Acidovorax citrulli AAC00-1] gi|120591523|gb|ABM34963.1| protein of unknown function DUF1078 domain protein [Acidovorax citrulli AAC00-1] Length = 425 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 SF GL+ A + L + N++N+ TVGF+ + +F+E+V G I ++ Sbjct: 2 SFQQGLSGLNAASKNLDVIGHNVANSGTVGFKASRAEFAEMVANAIGSAGGTNAGIGVEL 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 S VA +++ G+ TG LD A+ GD +F L+ P G TR G FK+ +G LV Sbjct: 62 SAVA--QQF---NQGNISVTGNSLDVAINGDGFFTLQQPDGSHAYTRAGNFKLDSNGQLV 116 Query: 116 SASGKYPVLDMASVPI 131 + + K V+ A PI Sbjct: 117 TNT-KAQVMGYALDPI 131 >gi|76808961|ref|YP_331880.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 1710b] gi|126452329|ref|YP_001064565.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 1106a] gi|167736704|ref|ZP_02409478.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 14] gi|167822319|ref|ZP_02453790.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 9] gi|167909128|ref|ZP_02496219.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 112] gi|226199728|ref|ZP_03795279.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei Pakistan 9] gi|242314788|ref|ZP_04813804.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1106b] gi|254196477|ref|ZP_04902901.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei S13] gi|254260132|ref|ZP_04951186.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1710a] gi|254295815|ref|ZP_04963272.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 406e] gi|14091669|gb|AAK53815.1|AF370881_1 flagellar basal-body rod protein [Burkholderia pseudomallei] gi|76578414|gb|ABA47889.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1710b] gi|126225971|gb|ABN89511.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1106a] gi|157805973|gb|EDO83143.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 406e] gi|169653220|gb|EDS85913.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei S13] gi|225928079|gb|EEH24115.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei Pakistan 9] gi|242138027|gb|EES24429.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1106b] gi|254218821|gb|EET08205.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1710a] Length = 253 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 19/238 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEY 65 A +LEQ+ S VA+N++N T GFR F V G+ D ++ S Sbjct: 12 ATQSLEQQ-SVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATTRTYTLSSTPG 70 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG LD A++G W ++ P G TR G V +G LV+A+ PV+ Sbjct: 71 ADFAPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQLVTAN-NLPVV 129 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGIS 178 P+ +P ++ +G G +S +A + L V+ ++R + G+ Sbjct: 130 GNGG-PLAVPPNAQL-TIGADGTVSALMPGDPPTAVAMIDRLKLVNPDPATMKRGDDGLF 187 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F T LI D+NE++ Sbjct: 188 RTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSADQNEQA 245 >gi|163803171|ref|ZP_02197054.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] gi|159173071|gb|EDP57904.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] Length = 261 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----IDQKISFVASGK 63 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ +DQ ++ + SG Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQ-VNELPSGV 66 Query: 64 EYLS-------KEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + S ++V G+ +T ELD A+ G +F +E+ G I+ TR+G+F + +G Sbjct: 67 QLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IAT 157 +V++ G P+ IQIP F+VG G ++ Q G++ I Sbjct: 127 LMVNSQG-LPL----EPQIQIPDDAISFSVGVDGTVTTTSADDPNPQQLGQISLAKFINP 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL +V G + RE + ED +G ++K+G LE SN + EM MI Sbjct: 182 AGLEAVG---GNLFRETAASGSADELIAGEDGAG-SIKQGALEGSNVQVVEEMVDMITTQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|53717915|ref|YP_106901.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei K96243] gi|53724566|ref|YP_104799.1| flagellar basal body rod protein FlgF [Burkholderia mallei ATCC 23344] gi|67641539|ref|ZP_00440316.1| flagellar basal-body rod protein FlgF [Burkholderia mallei GB8 horse 4] gi|121600078|ref|YP_994292.1| flagellar basal body rod protein FlgF [Burkholderia mallei SAVP1] gi|124385734|ref|YP_001028059.1| flagellar basal body rod protein FlgF [Burkholderia mallei NCTC 10229] gi|126438677|ref|YP_001057323.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 668] gi|126449756|ref|YP_001082866.1| flagellar basal body rod protein FlgF [Burkholderia mallei NCTC 10247] gi|134283591|ref|ZP_01770290.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 305] gi|167001538|ref|ZP_02267333.1| flagellar basal-body rod protein FlgF [Burkholderia mallei PRL-20] gi|167717661|ref|ZP_02400897.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei DM98] gi|167813803|ref|ZP_02445483.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 91] gi|167843909|ref|ZP_02469417.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei B7210] gi|167892411|ref|ZP_02479813.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 7894] gi|167900909|ref|ZP_02488114.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei NCTC 13177] gi|167917165|ref|ZP_02504256.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei BCC215] gi|217425035|ref|ZP_03456531.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 576] gi|237810462|ref|YP_002894913.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei MSHR346] gi|254174652|ref|ZP_04881313.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC 10399] gi|254182139|ref|ZP_04888736.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1655] gi|254188069|ref|ZP_04894581.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei Pasteur 52237] gi|254201897|ref|ZP_04908261.1| flagellar basal-body rod protein FlgF [Burkholderia mallei FMH] gi|254207231|ref|ZP_04913582.1| flagellar basal-body rod protein FlgF [Burkholderia mallei JHU] gi|254359733|ref|ZP_04976004.1| flagellar basal-body rod protein FlgF [Burkholderia mallei 2002721280] gi|52208329|emb|CAH34262.1| flagellar basal-body rod protein [Burkholderia pseudomallei K96243] gi|52427989|gb|AAU48582.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC 23344] gi|121228888|gb|ABM51406.1| flagellar basal-body rod protein FlgF [Burkholderia mallei SAVP1] gi|124293754|gb|ABN03023.1| flagellar basal-body rod protein FlgF [Burkholderia mallei NCTC 10229] gi|126218170|gb|ABN81676.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 668] gi|126242626|gb|ABO05719.1| flagellar basal-body rod protein FlgF [Burkholderia mallei NCTC 10247] gi|134245000|gb|EBA45095.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 305] gi|147747791|gb|EDK54867.1| flagellar basal-body rod protein FlgF [Burkholderia mallei FMH] gi|147752773|gb|EDK59839.1| flagellar basal-body rod protein FlgF [Burkholderia mallei JHU] gi|148028947|gb|EDK86879.1| flagellar basal-body rod protein FlgF [Burkholderia mallei 2002721280] gi|157935749|gb|EDO91419.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei Pasteur 52237] gi|160695697|gb|EDP85667.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC 10399] gi|184212677|gb|EDU09720.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1655] gi|217392055|gb|EEC32081.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 576] gi|237502787|gb|ACQ95105.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei MSHR346] gi|238522490|gb|EEP85934.1| flagellar basal-body rod protein FlgF [Burkholderia mallei GB8 horse 4] gi|243062739|gb|EES44925.1| flagellar basal-body rod protein FlgF [Burkholderia mallei PRL-20] Length = 253 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 19/238 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEY 65 A +LEQ+ S VA+N++N T GFR F V G+ D ++ S Sbjct: 12 ATQSLEQQ-SVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATTRTYTLSSTPG 70 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG LD A++G W ++ P G TR G V +G LV+A+ PV+ Sbjct: 71 ADFAPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQLVTAN-NLPVV 129 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGIS 178 P+ +P ++ +G G +S +A + L V+ ++R + G+ Sbjct: 130 GNGG-PLAVPPNAQL-TIGADGTVSALMPGDPPTAVAMIDQLKLVNPDPATMKRGDDGLF 187 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F T LI D+NE++ Sbjct: 188 RTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSADQNEQA 245 >gi|217976240|ref|YP_002360387.1| flagellar hook protein FlgE [Methylocella silvestris BL2] gi|217501616|gb|ACK49025.1| flagellar basal body FlaE domain protein [Methylocella silvestris BL2] Length = 414 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 5/113 (4%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+AAQ +LSTV+DN++N+DT G++ +F ++ S VA+ Y Sbjct: 13 GMAAQ---ANKLSTVSDNIANSDTTGYKQAMTEFENLISQAGTS-SYNASGVATVVRYNI 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 E G+ ST + D A++G+ +F + G + LTR G FK G+LV+A+G Sbjct: 69 SEHGNLKSTTSSTDLAIQGNGFFLVGDANGSVFLTRAGNFKPDATGNLVNAAG 121 >gi|52787553|ref|YP_093382.1| FlhP [Bacillus licheniformis ATCC 14580] gi|163119681|ref|YP_080952.2| flagellar hook-basal body protein [Bacillus licheniformis ATCC 14580] gi|52350055|gb|AAU42689.1| FlhP [Bacillus licheniformis ATCC 14580] gi|145903191|gb|AAU25314.2| flagellar hook-basal body protein [Bacillus licheniformis ATCC 14580] Length = 275 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 42/238 (17%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK----------- 63 L++++ ++ N++NTDT G++ FSE++ +++K + VA+ + Sbjct: 15 LQKQIDNISHNLANTDTTGYKAKNTSFSELIRQQIEQVNEKNNEVAASRKTPPGLRLGVG 74 Query: 64 ----EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVT------DDG 112 + L+ + GS TG +LD AL +F + + TRDG F +T + Sbjct: 75 AVMTDRLTHKQGSLKETGRDLDIALTSPYQYFQVNVGGEVQYTRDGAFYLTPAAGNANQM 134 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR- 171 LV+ G + VLD I+ Q+ + V E G ++ G + + G VR Sbjct: 135 QLVTKEG-HAVLDENGNAIRFNQRYKHIKVDESGSVTVSSD---NQGEAPLRFNLGIVRA 190 Query: 172 -------RENSG---ISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI 214 E S +S + T L +L+G +++K+GFLE SN + EM +I Sbjct: 191 VKPQALTEEGSNLFSVSDELRATALINLNGAGRQDISLKQGFLESSNVDVSKEMTDLI 248 >gi|304407726|ref|ZP_07389377.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] gi|304343209|gb|EFM09052.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] Length = 270 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 60/250 (24%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK----EY----- 65 L+Q+L +ADN++N +TVG++ F ++ + N Q +F G+ Y Sbjct: 15 LQQKLDILADNIANLNTVGYKRKDASFEDL---LTNAKQQPSAFKEPGRMSPMNYTQGWG 71 Query: 66 ---------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV-------- 108 LS+ G TG LD A+EG+A + + +P G TR+G F++ Sbjct: 72 VRLATIEPDLSQ--GPLQQTGNTLDIAIEGNALYEVRTPDGTAYTRNGSFQLSPLANGSS 129 Query: 109 ---TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK----------VI 155 T DG+L+ P++ A+ I++ + V G S GK ++ Sbjct: 130 VLATSDGNLLMGENDQPIVVPANHTIRVDADGTVQAVAGDGSASPVGKLKLLQATRPSLL 189 Query: 156 ATMG--LYSVDMS---QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 T+ LY+V + +R ++G S V++++G++E SN + EM Sbjct: 190 TTVADNLYAVAEGVNVEDVLRTVSAGAD-----------SKVSLRQGYVEQSNVDMTSEM 238 Query: 211 GQMIHLTQKF 220 +I++ + + Sbjct: 239 TDLINVQRAY 248 >gi|229591869|ref|YP_002873988.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens SBW25] gi|229363735|emb|CAY51140.1| flagellar basal-body rod protein [Pseudomonas fluorescens SBW25] Length = 261 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+T+++N++N T GF+ + +F +++ IK Sbjct: 11 GLSAQ---DTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKKQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + G+ TG LD A+ G +F + P G TRDG F + Sbjct: 68 LGTGVQIVGTQKNF---SAGNLQQTGQPLDMAINGRGFFQILQPDGTTSYTRDGTFHLDS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 +G +V+A+G L+ A V +P + F VG G +S Q I Sbjct: 125 NGQIVTANGF--ALEPAVV---VPADAKTFTVGNDGTVSITVAGNPASQVIGNLQTADFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ + F+ +SG +P I TP + G T++ LE SN +++ EM MI Sbjct: 180 NPAGLQAMG-NNLFLETASSG-APQI-GTPGLNGFGTTLQS-TLETSNVSTVEEMVNMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|254445900|ref|ZP_05059376.1| flagellar basal-body rod protein FlgG [Verrucomicrobiae bacterium DG1235] gi|198260208|gb|EDY84516.1| flagellar basal-body rod protein FlgG [Verrucomicrobiae bacterium DG1235] Length = 260 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 31/252 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIK--NDIDQKISFVASGKE 64 A + L+ +++N++N T GF+ KV+F ++ VGA N + I V +G + Sbjct: 14 AQQTNLNVISNNIANVSTTGFKKSKVEFQDMFYQVPKSVGADSGGNILPTGIQ-VGTGTQ 72 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 +S G TG +LD A+ GD +F + P + TRDG FKV G + ++ G Sbjct: 73 VVSTSKVFTQGQVSQTGEQLDVAIVGDGFFRVTGPDNETLYTRDGAFKVGPTGEVTNSQG 132 Query: 120 KYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKVIA-----TMGLYSVDMSQGF 169 +D A+ P + I + + + ++ +G++ + GL + + Sbjct: 133 -MTAIDFAAPPAGTTKVVINDTGGVTYLADDSDVLGRGQLQTARFRNSSGLLA--LGGNL 189 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 R ++ +P + P D SG T+++G+LE SN N + EM MI L Q+ I + + Sbjct: 190 FRETDASGAPTV-GNPGADGSG-TLQQGYLETSNVNIVEEMVNMI-LAQRAYEINSKSIQ 246 Query: 230 NEKSMLEAIRNI 241 SM++ + + Sbjct: 247 TSDSMMQQVAQL 258 >gi|332800000|ref|YP_004461499.1| flagellar basal-body rod protein FlgG [Tepidanaerobacter sp. Re1] gi|332697735|gb|AEE92192.1| flagellar basal-body rod protein FlgG [Tepidanaerobacter sp. Re1] Length = 270 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 122/266 (45%), Gaps = 40/266 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GA---IKN 50 G+ AQ + + ++N++N +T GF+ + +F +++ GA + Sbjct: 11 GMQAQ---QLNMDITSNNLANVNTAGFKKSRAEFKDLLYETLQRPDSPELLSGAAVPVGI 67 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 + + A+G+++ G+ TG D A+EG +F +E P G + TRDG FKV+ Sbjct: 68 QVGHGVRPSATGRDF---NEGNLQPTGNTFDVAIEGTGFFMVERPDGNLAFTRDGSFKVS 124 Query: 110 DDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLY 161 DG+ LV++ G Y VL I IP++ ++ G I+ + G + + +G+ Sbjct: 125 LDGTDRNLVTSEGYY-VLSGDESYITIPEEYTDISISSDGLITGQDEDGTIEELGQIGIV 183 Query: 162 SVDMSQGFVRRENS---GISPNIPPTPLEDLSGV---TVKRGFLEDSNANSMYEMGQMIH 215 QG + N+ + P+ED+S T+ +GFLE SN + EM +I Sbjct: 184 KFLNPQGLLAIGNNLFEATEASGEYVPMEDVSDPGYGTLLQGFLEMSNVQVVEEMVNLI- 242 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + Q+ + T + ML N+ Sbjct: 243 IAQRAYEVNTKAVQASDEMLAQANNL 268 >gi|285018207|ref|YP_003375918.1| flagellar basal-body rod protein flgg [Xanthomonas albilineans GPE PC73] gi|283473425|emb|CBA15930.1| probable flagellar basal-body rod protein flgg [Xanthomonas albilineans] Length = 261 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 44/239 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKN--------DIDQKIS 57 A + R+S V++N++NT T GF+ + F +++ GA + + + Sbjct: 14 AQQTRMSVVSNNLANTSTTGFKRDRASFEDLLYQQRRQPGGASSSQTQLPSGLQLGTGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 VA+ K++ E GS TG LD + G + ++ P G TRDG +V G LV+ Sbjct: 74 VVATSKDF---EQGSQQQTGRALDVMVNGRGFLEVQMPDGTSAYTRDGSLQVNAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIAT-----MGLY 161 SG Y + IQIP+ + +G G +S Q G + T GL Sbjct: 131 NSG-YAI----QPGIQIPEGAQSLTIGNDGTVSVQVPGSAAALQVGSLTLTDFINPSGLQ 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + +V SG P TP + G TV+ G LE SN N + E+ MI + + Sbjct: 186 ATGQNL-YVETAASG--PAQSGTPGLNGLGTTVQ-GALEGSNVNVVEELVSMIETQRAY 240 >gi|154710440|gb|ABS84283.1| FlgG-2 [Treponema paraluiscuniculi] Length = 271 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 39/246 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV-------GAIKN-----DI 52 G++AQ + RL +A N++N DT ++ + F E++ G +KN D+ Sbjct: 11 GMSAQ---QHRLDAIAQNLANVDTTSYKRDVAVHKSFPELLLRRVNDDGVVKNPFGSSDV 67 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + + G E + E GS T + D ALEG +F + +P+G TR+G F V Sbjct: 68 SPIVGKLGLGVEVNELFTEFEQGSLKQTQSPSDIALEGMGFFVIRTPQGEEYTRNGNFLV 127 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--------GKVIATMGL 160 +G L++ +G YPVL + P+ + ++ + + + GEI + G + + + Sbjct: 128 GVEGYLMTKNG-YPVLG-ENGPLFL--QERYYTINQNGEIYVRPIDRPDVDGFFLDRLKI 183 Query: 161 YSVDMSQGFVRRENSGISPNIP----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + + + +++++ + P P E +GF+E SN N + EM +MI + Sbjct: 184 VTFENVR-YLQKKGADTYMQTPVSGAPIAAEGPERPAAVQGFVEASNVNVVNEMVRMIEV 242 Query: 217 TQKFNS 222 + + + Sbjct: 243 NRAYEA 248 >gi|308050370|ref|YP_003913936.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] gi|307632560|gb|ADN76862.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] Length = 262 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 113/233 (48%), Gaps = 32/233 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKN---DIDQKIS 57 GL AQ + ++T+++N++N TVG++ + F +++ G I + ++ ++ Sbjct: 11 GLDAQ---QTDIATISNNLANASTVGYKKSRAIFEDLLYQTINQAGGISSQNTELPAGLT 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++ + G+ ++T LD +EG +F ++ P G I +R+G+F + D+G Sbjct: 68 LGAGTKVAATQRIFSQGNMLTTDNSLDLMIEGPGFFEIQLPDGTIAYSRNGQFALDDEGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQ 167 LV+ + + + IQ+P+ + V +GE+S + +VI + + + Sbjct: 128 LVTPGAGF----LLNPGIQVPEDAQSITVSGEGEVSVRVPGAAENQVIGQIEIANFVNPT 183 Query: 168 GFVR-RENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G +N + P++ + G+ T+++G LE SN N E+ MI Sbjct: 184 GLEPIGQNMFLETGASGAPIQGVPGLDGLGTLRQGALETSNVNVTEELVNMIE 236 >gi|15639945|ref|NP_219398.1| flagellar basal-body rod protein (flgG-2) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026184|ref|YP_001933956.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|3323282|gb|AAC65916.1| flagellar basal-body rod protein (flgG-2) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018759|gb|ACD71377.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|291060316|gb|ADD73051.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 271 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 116/246 (47%), Gaps = 39/246 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV-------GAIKN-----DI 52 G++AQ ++RL +A N++N DT ++ + F E++ G +KN D+ Sbjct: 11 GMSAQ---QRRLDAIAQNLANVDTTSYKRDVAVHKSFPELLLRRVNDDGVVKNPFGSSDV 67 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + + G E + E GS T + D ALEG +F + +P+G TR+G F V Sbjct: 68 SPIVGKLGLGVEVNELFTEFEQGSLKQTQSPSDIALEGMGFFVIRTPQGEEYTRNGNFLV 127 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--------GKVIATMGL 160 +G L++ +G YPVL + P+ + ++ + + + GEI + G + + + Sbjct: 128 GVEGYLMTKNG-YPVLG-ENGPLFL--QERYYTINQNGEIYVRPIDRPDVDGFFLDRLKI 183 Query: 161 YSVDMSQGFVRRENSGISPNIP----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + + + +++++ + P P E +GF+E SN N + EM +MI + Sbjct: 184 VTFENVR-YLQKKGADTYMQTPVSGAPIAAEGPERPAAVQGFVEASNVNVVNEMVRMIEV 242 Query: 217 TQKFNS 222 + + + Sbjct: 243 NRAYEA 248 >gi|37360908|dbj|BAC98362.1| flagellar basal-body rod protein [Burkholderia glumae] Length = 251 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 47/263 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQK----------- 55 A + ++ +++N++N T GF+ + F +++ GA N Q Sbjct: 3 AQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGA--NSTQQTELPSGLQLGTG 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSL 114 + VA+ + Y G+ TG D A+ G +F + P G TRDG F+ + G L Sbjct: 61 VQQVATERLYTQ---GNLQQTGNSRDVAINGQGFFQVLMPDGTTAYTRDGSFQANNQGQL 117 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKV----IATMGLYSVDMSQG 168 V+++G Y VL I +PQ + +G G ++Q G I +M L + +G Sbjct: 118 VTSAG-YQVLPA----ITVPQNAQSLTIGADGVVTVTQPGSTNAVQIGSMQLATFINPEG 172 Query: 169 --------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 F +SG +PN+ TP + +G ++ +G++E SN N E+ MI TQ+ Sbjct: 173 LNALGQNLFAETTSSG-APNV-TTPGLNGAG-SLNQGYVESSNVNVXQELVNMIQ-TQRA 228 Query: 221 NSITTLIDENEKSMLEAIRNIAS 243 I + ML+ + + S Sbjct: 229 YEINSKAVTTSDQMLQTVTQMKS 251 >gi|319648038|ref|ZP_08002255.1| FlhP protein [Bacillus sp. BT1B_CT2] gi|317389673|gb|EFV70483.1| FlhP protein [Bacillus sp. BT1B_CT2] Length = 271 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 42/238 (17%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK----------- 63 L++++ ++ N++NTDT G++ FSE++ +++K + VA+ + Sbjct: 11 LQKQIDNISHNLANTDTTGYKAKNTSFSELIRQQIEQVNEKNNEVAASRKTPPGLRLGVG 70 Query: 64 ----EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVT------DDG 112 + L+ + GS TG +LD AL +F + + TRDG F +T + Sbjct: 71 AVMTDRLTHKQGSLKETGRDLDIALTSPYQYFQVNVGGEVQYTRDGAFYLTPAAGNANQM 130 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR- 171 LV+ G + VLD I+ Q+ + V E G ++ G + + G VR Sbjct: 131 QLVTKEG-HAVLDENGNAIRFNQRYKHIKVDESGSVTVSSD---NQGEAPLRFNLGIVRA 186 Query: 172 -------RENSG---ISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI 214 E S +S + T L +L+G +++K+GFLE SN + EM +I Sbjct: 187 VKPQALTEEGSNLFSVSDELRATALINLNGAGRQDISLKQGFLESSNVDVSKEMTDLI 244 >gi|304310887|ref|YP_003810485.1| Flagellar basal-body rod protein [gamma proteobacterium HdN1] gi|301796620|emb|CBL44832.1| Flagellar basal-body rod protein [gamma proteobacterium HdN1] Length = 261 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GL+AQ + RLST+++N++N T GF+ F +++ ++ Sbjct: 11 GLSAQ---DLRLSTISNNLANVSTTGFKRDIAVFQDLLYQVQRQPGGQSSQDTQLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + + VA+ K++ G+ +TG LD A+ G +F + P G I TRDG F+++ Sbjct: 68 VGTGVKTVATKKQHTE---GTIQTTGQALDVAIMGRGFFQVLMPDGAIAYTRDGAFQLSA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 +G LV+A G L+ A I +P+ + +G G ++ Q + Sbjct: 125 EGDLVTAEGLS--LEPA---INVPEGSQSVTIGNDGTVTAVDGQTKQQIEIGNIQLADFV 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL SV + + RE P D +G T+++ LE SN N + E+ MI Sbjct: 180 NPAGLESVGSN---LYRETVASGAPTEAQPGTDGTG-TLQQNALEASNVNVVEELVNMIE 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|294013088|ref|YP_003546548.1| flagellar basal-body rod protein FlgG [Sphingobium japonicum UT26S] gi|292676418|dbj|BAI97936.1| flagellar basal-body rod protein FlgG [Sphingobium japonicum UT26S] Length = 262 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 45/244 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKN-DIDQKI----- 56 GL AQ ++ +A+N++N +T GF+ + F ++V A N D + K Sbjct: 12 GLDAQ---NTKMRVIANNLANVNTTGFKRDRADFETLAYQQIVAAGANSDSENKFATGLN 68 Query: 57 --SFVA-SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 S VA G ++ + G+ TG LD A+EG +F ++ P G I TR G F T +G Sbjct: 69 LGSGVALQGTSKINAQ-GTLNQTGNTLDMAIEGSGYFQVQQPDGSIAYTRAGNFTTTAEG 127 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATM--- 158 +V++ G P++ I +P+ +G G +S Q G++ +A+ Sbjct: 128 VVVTSDG-LPLIPQ----ITVPEGATSVTIGNDGTVSATLQGQTEPTQLGQIELASFMNP 182 Query: 159 -GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR-GFLEDSNANSMYEMGQMIHL 216 GL SV G + +E++ + P + L G V R G+LE SN N + E+ MI Sbjct: 183 GGLTSVG---GNLLKESA--ASGTPQVGVAGLDGRGVVRAGYLETSNVNVVEELVDMIET 237 Query: 217 TQKF 220 + + Sbjct: 238 QRAY 241 >gi|326319097|ref|YP_004236769.1| fagellar hook-basal body protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375933|gb|ADX48202.1| fagellar hook-basal body protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 425 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 SF GL+ A + L + N++N+ TVGF+ + +F+E+V G I ++ Sbjct: 2 SFQQGLSGLNAASKNLDVIGHNVANSGTVGFKASRAEFAEMVANAIGSAGGTNAGIGVEL 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 S VA +++ G+ TG LD A+ GD +F L+ P G TR G FK+ +G LV Sbjct: 62 SAVA--QQF---NQGNISVTGNSLDVAINGDGFFTLQQPDGSRAYTRAGNFKLDSNGQLV 116 Query: 116 SASGKYPVLDMASVPI 131 + + K V+ A PI Sbjct: 117 TNT-KAQVMGYALDPI 131 >gi|325529015|gb|EGD06028.1| flagellar basal body rod protein FlgF [Burkholderia sp. TJI49] Length = 252 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 28/242 (11%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVAS--GK 63 A +L+Q+ + VA+N++N T GFR + V G+ + + +AS G Sbjct: 12 ASQSLDQQ-AIVANNLANASTTGFRAQLATYRAVPMNFGDGSTVDPTTTRTYVLASTPGA 70 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 ++ G TG LD A++G W +++ G TR G V +G LV+AS P Sbjct: 71 DFAP---GPITRTGNPLDVAVQGAGWLSVQLADGSEAYTRAGNLHVDQNGQLVNAS-NLP 126 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVRREN 174 V+ PI +P E+ +G+ G +S ++ M L + D + + R N Sbjct: 127 VVGNGG-PISVPPNAEV-TIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT--LTRGN 182 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENE 231 G+ P + V V LE SN N + M MI + F + LI D+NE Sbjct: 183 DGLFRTADGNPADADPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNE 242 Query: 232 KS 233 +S Sbjct: 243 QS 244 >gi|323703177|ref|ZP_08114830.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] gi|323531836|gb|EGB21722.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] Length = 256 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 16/237 (6%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISFVASGKEYLSKE 69 R+ V +N++N +T GF+ +V F + + G + Q + V G ++ Sbjct: 18 RMDVVGNNIANVNTNGFKASRVNFQDAISQTMRSASGTPAINPSQIGTGVKVGGISINAG 77 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G +TG LD A++G+ +F L TR+G F + + +L+++ G V D + Sbjct: 78 QGPLQNTGRTLDLAIQGNGYFILTDGTNKYYTREGTFFIDINNNLINSDG-LQVCDTSGK 136 Query: 130 PIQIPQKD-EIFNVGEKGEISQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP---P 183 I + ++ ++GEI GK + +G+ + + G R N+ ++ P Sbjct: 137 AITLQTTPVNTISINDQGEIFVNGKTTSEGQVGIATCNNPAGLERVGNNLYKESLASGTP 196 Query: 184 TP-LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TP +G T+ G+LE SN + EM MI + + + +I ++ + E I+ Sbjct: 197 TPGTARAAGSTINSGYLEMSNVDLTEEMTNMITTQRGYQANARVITVSDTLLEELIQ 253 >gi|237755390|ref|ZP_04584017.1| flagellar basal body and hook protein FlgE [Sulfurihydrogenibium yellowstonense SS-5] gi|237692431|gb|EEP61412.1| flagellar basal body and hook protein FlgE [Sulfurihydrogenibium yellowstonense SS-5] Length = 413 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKI 56 M SF + +Q L+ ++DN++N +T+GF++ +V F +++ N+ + Sbjct: 1 MLQSFYTAITGLNGNQQWLNVISDNIANVNTIGFKSERVTFEDLIAHSLTTFANNTPKNT 60 Query: 57 -----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 SF+A + S+ GSF++T + D AL+G+ +F ++ +G + TR G+F++ Sbjct: 61 EIGGGSFIALTTKDFSQ--GSFMNTNSPTDLALDGEGFFMVKDNQGTVYYTRAGQFRLNA 118 Query: 111 DGSLVSASG 119 DG LV+ G Sbjct: 119 DGDLVNVDG 127 >gi|170737039|ref|YP_001778299.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia MC0-3] gi|169819227|gb|ACA93809.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia MC0-3] Length = 241 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 12/207 (5%) Query: 19 LSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 L+ A+N+SN T GFR + S+ D + ++ +++ E G TG Sbjct: 19 LNVRANNLSNAQTSGFRADLASVTSQAARGYGYDSRYHATLTST---HVNPEPGKISETG 75 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 LD A++G + A+E+ +G+ TR G + DG+L + +G VL PI +P+ D Sbjct: 76 RTLDVAIDGGGYLAVETAQGVAYTRAGALTLDGDGAL-TLNGN-AVLGEGG-PIVLPEHD 132 Query: 138 EIFNVGEKGEIS---QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + +G G IS K I G L V+ + + G+ + T VT Sbjct: 133 AL-TIGADGTISVVTAGEKDIQDAGRLLLVNPDPADLVKNAQGLIVSRTGTDYAADDSVT 191 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKF 220 VK G LE SN +++ EM Q + LT+ F Sbjct: 192 VKGGHLEASNVSAVEEMMQTMSLTRSF 218 >gi|83720527|ref|YP_440802.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis E264] gi|167617586|ref|ZP_02386217.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis Bt4] gi|257140547|ref|ZP_05588809.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis E264] gi|83654352|gb|ABC38415.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis E264] Length = 253 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 19/238 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEY 65 A +LEQ+ S VA+N++N T GFR F V G+ D ++ S Sbjct: 12 ATQSLEQQ-SVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATTRTYTLSSTPG 70 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG LD A++G W ++ P G TR G V +G LV+A+ PV+ Sbjct: 71 ADFAPGPIERTGNPLDVAIQGPGWLSVMLPDGSEAYTRAGNLHVDQNGQLVTAN-NLPVV 129 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGIS 178 P+ +P ++ +G G +S +A + L V+ ++R + G+ Sbjct: 130 GNGG-PLAVPPNAQL-TIGADGTVSALMPGDPPTAVAMIDQLKLVNPDPATMKRGDDGLF 187 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 P + V V LE SN N + M MI + F T LI D+NE++ Sbjct: 188 RTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKLIQSADQNEQA 245 >gi|188587423|ref|YP_001918968.1| flagellar basal-body rod protein FlgG [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352110|gb|ACB86380.1| flagellar basal-body rod protein FlgG [Natranaerobius thermophilus JW/NM-WN-LF] Length = 265 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 55/273 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S G + A ++ + V++N++N +T G++ + +F +++ A D Sbjct: 1 MFRSLWTGASGMNAQQKNMDVVSNNLANANTTGYKNSRAEFQDLIYATLERPDGPDDLGD 60 Query: 55 ---------KISFVASGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRD 103 +I A L GS T + D A+EGD +F +E G TRD Sbjct: 61 DGRSTPAGIQIGHGAKNSATLRDFSTGSMQETEQDFDLAIEGDGFFIIEGTEGEEYYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G FK+ +G+LV++ G L + S +IPQ E NV I+++G+VIAT+ Sbjct: 121 GSFKIDGEGNLVTSDG----LHVQSFDGEIPQ--EATNV----SITEEGRVIATLEDGET 170 Query: 164 DMSQGFVRRENSGISPNIPPTPLE----DLSGVT------------------VKRGFLED 201 D G + I+ I P LE +L T +++GFLE Sbjct: 171 D-EIGEIE-----IASFINPAGLEAQGSNLYSATAASGDASVGLPGENGRGQLQQGFLEG 224 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 SN N EM MI + + + + I ++ M Sbjct: 225 SNVNIAEEMVNMITAQRAYETNSKSIQSTDEMM 257 >gi|264676572|ref|YP_003276478.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni CNB-2] gi|299531284|ref|ZP_07044694.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni S44] gi|262207084|gb|ACY31182.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni CNB-2] gi|298720691|gb|EFI61638.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni S44] Length = 260 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 40/237 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ---------KIS 57 A + +L ++ N++N T G++ F +++ G+ + +Q + Sbjct: 14 AQQTQLDVISHNLANVSTTGYKRANAVFEDLIYQNLRQSGSQTTEQNQLPTGLHLGLGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ + +L GS + LD A+ G+ +F + P G I TRDG F+V G LV+ Sbjct: 74 TVATSRNFLQ---GSLQQSSNALDVAINGNGFFEVNMPDGTIAYTRDGSFEVDAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVDMSQGFV---- 170 +SG PV + I IPQ ++ G +S G+ A + ++ MSQ F+ Sbjct: 131 SSG-LPVAN----GITIPQGATKVSISHDGVVSVTMPGQA-APQQVGNIAMSQ-FINAAG 183 Query: 171 ---RRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 R +N + P + G T+++G+LE SN N + E+ MI + + Sbjct: 184 LEPRGQNLYVETASSGQPQQGTPGTNGLGTIQQGYLEASNVNVVQELVTMIQTQRAY 240 >gi|317179250|dbj|BAJ57038.1| flagellar basal-body rod protein [Helicobacter pylori F30] Length = 269 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 118/277 (42%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A A RL +++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMAAQFNRLDLISNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + ++ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGIHQISDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|220903671|ref|YP_002478983.1| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867970|gb|ACL48305.1| flagellar basal-body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 261 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 24/235 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S G +A + + +++N++N +T GF+ + +F +++ G+I + Sbjct: 1 MMRSLWTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDLMYQTMRMAGSITEGDN 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + G V G F +TG LD A+EGD +F ++ ++ TR G FK Sbjct: 61 RLPVGIQVGMGTRPTAVHKFFTQGDFQNTGNTLDVAIEGDGFFQVDVNGELMYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI--ATMGLYSVDM 165 + DG +V+A+G Y + +VP + + I + G + +G+ I A + LY+ Sbjct: 121 LNQDGVVVTANG-YILQPEFAVPPET-KNISISSSGHIAALDAQGQEIAGAEIPLYTFIN 178 Query: 166 SQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G R + +P + P D G T+ +GFLE SN + EM MI Sbjct: 179 YAGLDARGRNLFTPTEASGEAVEGIPGTDNVG-TLAQGFLEMSNVEVVDEMVNMI 232 >gi|157959901|ref|YP_001499935.1| flagellar basal-body rod protein FlgF [Shewanella pealeana ATCC 700345] gi|157844901|gb|ABV85400.1| flagellar basal-body rod protein FlgF [Shewanella pealeana ATCC 700345] Length = 241 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 10/215 (4%) Query: 23 ADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 A+N++N DT GF+ ++ ++V+ I + + ++ G + S++ G+ TG LD Sbjct: 20 ANNLANADTTGFKADLERVNAKVIAPIGDSLQTRVLAQTQGSGF-SRQSGTLNPTGRTLD 78 Query: 82 FALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ F++ + G TR G G L + G+ PV +A PI +P+ E+F Sbjct: 79 LAINNAGLFSVMTAEGEGYTRAGAMTADATGQL-TLDGR-PVAGLAG-PIVLPEYRELF- 134 Query: 142 VGEKGEI---SQKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 +G+ G I + VI +G L V+ + + G+ PL VTV G Sbjct: 135 IGDDGRINIIADADGVIEEVGQLKLVNPDIALMSKGLDGLLYPQDRQPLPASEEVTVSSG 194 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 FLE SN ++ E+ + L+++F L+ EK Sbjct: 195 FLEASNVQAVGELIAAMDLSRQFEVQVKLMKSAEK 229 >gi|86157777|ref|YP_464562.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C] gi|85774288|gb|ABC81125.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C] Length = 266 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 33/254 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKIS--------FVA 60 A + R+ +A+N++NT T GF+ + +F +++ GA D + V Sbjct: 19 AQQLRMDVIANNLANTGTTGFKRQRAEFEDLLSETVRGAEAPDPRGGTAPAPLQVGLGVR 78 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 +G + G ++TG LD A+EGD +F ++ P G + TR G F+V G LV+A G Sbjct: 79 TGSTVRNFGQGELLTTGNALDLAVEGDGFFRVQRPDGSLAYTRAGNFRVDAAGRLVTARG 138 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYS------VDMSQ 167 + V+D I P + V G + + + + + L + ++ + Sbjct: 139 E--VVDPE---ITFPPETTRVTVDADGTVRAQVAGREAPQELGRLELCTFPNPGGLEAAG 193 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G + + + + P E +G T+ +GFLE +N ++ EM MI TQ+ + + + Sbjct: 194 GNLLLQTAASGEAVDARPGEQGAG-TLAQGFLEGANVKAVEEMIDMIA-TQRAYELNSRV 251 Query: 228 DENEKSMLEAIRNI 241 + ML+ + ++ Sbjct: 252 VQTADQMLQRLTSL 265 >gi|28869143|ref|NP_791762.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato str. DC3000] gi|213967580|ref|ZP_03395728.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato T1] gi|301385715|ref|ZP_07234133.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tomato Max13] gi|302060072|ref|ZP_07251613.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tomato K40] gi|302134831|ref|ZP_07260821.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852383|gb|AAO55457.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato str. DC3000] gi|213927881|gb|EEB61428.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato T1] gi|331017023|gb|EGH97079.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 246 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 35/249 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ + + ++ SG Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVMPSRAYAMSERPGTDFSG 68 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 69 --------GAMVETGRELDIAIKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG-L 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIAT---MGLYSVDMSQGFVRRE 173 PV+ PI +P + +I +G G IS + +V+A + L D+ + + Sbjct: 120 PVMGNGG-PIAVPPQQQI-EIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--MEKG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ +E+ Sbjct: 176 PDGLIHTKSGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAEED 235 Query: 231 EKSMLEAIR 239 ++SM ++ Sbjct: 236 DQSMARVLQ 244 >gi|66046705|ref|YP_236546.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. syringae B728a] gi|63257412|gb|AAY38508.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Pseudomonas syringae pv. syringae B728a] gi|330899405|gb|EGH30824.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. japonica str. M301072PT] gi|330972415|gb|EGH72481.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975978|gb|EGH76044.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 246 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 41/252 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ ++ S Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVM--------PSRAYAMSE 60 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 61 RPGTDFSAGAMVQTGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG-L 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ----GFVR------ 171 PV+ PI +P + +I +G G IS I ++G M+Q VR Sbjct: 120 PVMGNGG-PIAVPPQQQI-EIGADGTIS-----IRSLGESPQVMAQVDRIKLVRPDLKTM 172 Query: 172 -RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI--- 227 + G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ Sbjct: 173 EKGPDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTA 232 Query: 228 DENEKSMLEAIR 239 +E+++SM ++ Sbjct: 233 EEDDQSMARVLQ 244 >gi|229591870|ref|YP_002873989.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens SBW25] gi|229363736|emb|CAY51141.1| flagellar basal-body rod protein [Pseudomonas fluorescens SBW25] Length = 246 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 38/230 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q AL Q+ A+N++N T GF + D++Q S G + ++ Sbjct: 12 ASQNALAQKAH--ANNLANISTNGF--------------QRDLEQARSMPVFGDSFPARA 55 Query: 70 V------------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G+ I TG +LD A+ G+ W A+++P G R V G L + Sbjct: 56 FALTERPGTDFSPGAMIETGRDLDVAVSGNGWMAVQTPDGSEAYVRSASMNVDALGVLRA 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD---MSQGFVRRE 173 +G P++ PI +P + +I VG G IS + + VD + Q ++ Sbjct: 116 GNG-MPIMGNGG-PIAVPPQQKI-EVGADGTISIRAMGEGPRVMAEVDRIKLVQPDLKNM 172 Query: 174 NSGISPNIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 N G+ I P + + VT+ GFL+ SN N++ EM ++ L+++F Sbjct: 173 NKGLDGTIHTKDGQPAQADATVTLTSGFLQASNVNAVEEMTAVLALSKQF 222 >gi|88704304|ref|ZP_01102018.1| Flagellar basal-body rod protein flgG [Congregibacter litoralis KT71] gi|88701355|gb|EAQ98460.1| Flagellar basal-body rod protein flgG [Congregibacter litoralis KT71] Length = 243 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 33/248 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVASGKEYLSKE 69 +ST+A+N++N T GF+ + F +++ + + S + +G ++ E Sbjct: 1 MSTIANNLANVGTTGFKRGRAIFEDLIYQNVRQVGSQSSQDTLLPSGLQIGTGTRVVATE 60 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ T LD A++G +F + P G TRDG F++ D G +V+++G Sbjct: 61 RLFTQGNLTKTDGALDIAIQGRGFFEILLPDGNQAFTRDGSFQINDQGIVVTSAGY---- 116 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-MGLYS----VDMSQGFVRREN--- 174 PI +PQ + G +S Q G AT +GL ++ + R EN Sbjct: 117 -QLQPPITVPQDALSVTIAADGTVSVQQPGTAAATQIGLVQLTDFINPAGLQARGENLFL 175 Query: 175 -SGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 SG S P L+G+ T+ +G++E SN N + E+ MI TQ+ + + Sbjct: 176 ESGAS-GAPQPGNPGLNGLGTLSQGYVESSNVNVVEELVNMIE-TQRAYEMNSRAISTAD 233 Query: 233 SMLEAIRN 240 ML+ I N Sbjct: 234 QMLQYISN 241 >gi|220934396|ref|YP_002513295.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. HL-EbGR7] gi|219995706|gb|ACL72308.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. HL-EbGR7] Length = 263 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 42/262 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKIS---F 58 GL AQ + R+S +++N++N +T GF+ + F +++ + D ++ Sbjct: 11 GLDAQ---QTRMSVISNNLANVNTTGFKKGRAVFQDLIYQTVRQAGAQAAQDTELPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G ++ E G+ T LD A+EG +F + P G I TRDG F++ DG Sbjct: 68 LGTGVRTVATEKMFTQGNVTQTENALDMAIEGRGFFQILMPDGNIAYTRDGSFQLNSDGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 LV+ SG Y V I IP+ V E G +S Q I Sbjct: 128 LVT-SGGYEV----DPGIVIPEGALSVTVAEDGTVSATVAGNVAPIVVGNLQLADFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL + + F+ SG +P P D G + +GFLE SN N++ E+ MI TQ Sbjct: 183 GLQPIGQNL-FIETAASG-APQ-AGNPGLDGRG-RLLQGFLESSNVNTVEELVNMIE-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + + + ML+ + N Sbjct: 238 RAYEMNSKAISTADQMLQYVNN 259 >gi|51894143|ref|YP_076834.1| flagellar basal body and hook proteins [Symbiobacterium thermophilum IAM 14863] gi|51857832|dbj|BAD41990.1| flagellar basal body and hook proteins [Symbiobacterium thermophilum IAM 14863] Length = 231 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 19/164 (11%) Query: 13 LALEQ-RLSTVADNMSNTDTVGFR---TIKVKFSEVV----GAIKNDIDQKISFVASGKE 64 +A+EQ R +ADN++N +T GF+ V+F ++ G + Q++ + +G Sbjct: 12 MAVEQLRTDVLADNIANMNTSGFKRATATSVEFDRMLIHRMGDPTDPRSQEVGTLGNGSR 71 Query: 65 Y----LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G TG LD ALEG WF + P G + TR+G F+ DG++ +A G Sbjct: 72 VDQVVVDERQGDIYETGRALDLALEGPGWFLAQRPDGSLYRTRNGAFRQMADGTITTAEG 131 Query: 120 KYPVLDMAS---VPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 Y VL A VP+ +P + F G I G I + L Sbjct: 132 -YRVLMEAPGGLVPLVVPGVEPTFQA--DGTILADGMPIGRLAL 172 >gi|260886211|ref|ZP_05897474.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|330839793|ref|YP_004414373.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|260863930|gb|EEX78430.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|329747557|gb|AEC00914.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] Length = 263 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 34/250 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASG---K 63 A + + VA N++N +T G + ++ +F ++V GA Q + +A G + Sbjct: 14 AQQDNMDVVAHNIANVNTFGSKKVRAEFQDLVYQNLRAAGAQSGADSQYPTGLAIGLGTR 73 Query: 64 EYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 ++ + G+ S+G D A++G+ +F +E P G I TRDG FK+ + LV+ G Sbjct: 74 TAATQRIFTQGNLQSSGNPTDVAIQGEGFFRIEMPDGTIAYTRDGSFKLDQNRRLVTTDG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGE--------KGEISQKGKV-----IATMGLYSVDMS 166 YP+ D ++ P D I G+ G ++ G++ + GL+++ + Sbjct: 134 -YPLADGITLDANAP-SDSIVIAGDGQVSCTPAGGNVTAVGQITLSRFVNPAGLFAIGKN 191 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + +E I P E+ +G T+ +G +E SN + EM MI + + S + Sbjct: 192 ---LFKETDASGNAIDSNPGEEGAG-TLTQGVVEMSNIQIVEEMVNMIVAQRAYESNSKA 247 Query: 227 IDENEKSMLE 236 I ++ SMLE Sbjct: 248 ITTSD-SMLE 256 >gi|218703525|ref|YP_002411044.1| lateral flagellar hook FlgE-like protein [Escherichia coli UMN026] gi|293403355|ref|ZP_06647446.1| flgE [Escherichia coli FVEC1412] gi|300900359|ref|ZP_07118535.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] gi|218430622|emb|CAR11488.1| Lateral flagellar hook protein (FlgE-like) [Escherichia coli UMN026] gi|291429208|gb|EFF02228.1| flgE [Escherichia coli FVEC1412] gi|300356127|gb|EFJ71997.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] Length = 400 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|109947349|ref|YP_664577.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis str. Sheeba] gi|109714570|emb|CAJ99578.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis str. Sheeba] Length = 269 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 36/256 (14%) Query: 18 RLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISFVASGKE---------- 64 RL V++N++N +T GF+ TI F + + + K AS K Sbjct: 18 RLDLVSNNLANLNTNGFKRDDTITSDFLRLYQQYQEQLPLKDQTKASAKYLNRNLNRVPI 77 Query: 65 ----YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 Y K +G+F T LDFAL + +FA+++ GI TRDG F + DG LV+ +G Sbjct: 78 LSEIYTDKSLGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTRDGHFSIDKDGFLVTLNG 137 Query: 120 KYPVLDMASVPIQ-----IPQKDEIFNVGEKGEI--SQKGKVIATMGLYSVDMSQGFVRR 172 + VL + + Q +P + V + G I S I L V S+ + Sbjct: 138 -FKVLSRSGLNEQGGIMLMPNTE--IEVDQNGGITFSDNEAQIQAGALALVSFSEP---K 191 Query: 173 ENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 I N+ E + V+ +++ LE SN N++ EM +I + + + + ++ Sbjct: 192 NLKKIGQNLYTYQGEGIHQVSDSNALRQYMLEKSNVNAVREMSALIEINRFLDMYSKVLK 251 Query: 229 ENEKSM-LEAIRNIAS 243 ++ M EAI +A+ Sbjct: 252 THQDDMNAEAINKLAT 267 >gi|168182722|ref|ZP_02617386.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|237796078|ref|YP_002863630.1| flagellar basal body rod protein FlgG [Clostridium botulinum Ba4 str. 657] gi|182674102|gb|EDT86063.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|229264182|gb|ACQ55215.1| flagellar basal body rod protein [Clostridium botulinum Ba4 str. 657] Length = 255 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 25/248 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S ++ ++LE + T++ N+SN TVG+++ + F + + + D+K Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 56 ISFVASGKEYLSK--EVGSFIS------TGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I + G +K EV + + TG DFALEG +F +E+ TRDG F Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 V G LV+ SG Y V+ + ++ IF VG K + I+ G+ S Sbjct: 121 VDTRGYLVNDSG-YNVM---GINRNTGAREAIF-VGNKTIGTDANGNISLNGVPSYSFQV 175 Query: 168 GFVRRENS--GISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS-- 222 NS I N+ ++++G+ V++ LE SN N EM M+ + F + Sbjct: 176 ADFNDYNSLKKIGDNLFEGNNPQNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSFETNQ 234 Query: 223 -ITTLIDE 229 I IDE Sbjct: 235 KIVQSIDE 242 >gi|312794500|ref|YP_004027423.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876698|ref|ZP_07736678.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796538|gb|EFR12887.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|312181640|gb|ADQ41810.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 255 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 120/251 (47%), Gaps = 24/251 (9%) Query: 10 AAQLALEQRLSTV-ADNMSNTDTVGFR----TIKVKFSEVVGAIKNDI---DQKISFVAS 61 A+ + L Q+L + A+N++N T GF+ ++ + +V I + + D I +++ Sbjct: 9 ASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKVSSPDNAIGYMSL 68 Query: 62 GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESP-----RGIILTRDGRFKVTDD 111 G + +S+ V G +I T L+ A+ G+ +FA+E P + I+ TR+G F + Sbjct: 69 GSD-VSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAIEVPGSQGAQQILYTRNGAFTLNSR 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G LV+ G Y + + +Q + I E+G I Q G+ + + + Q + Sbjct: 128 GELVTLDGFYVLGQNGRIVLQNGGQVRI---DEQGNIYQDGRFVDRLRIVDFQDKQLLRK 184 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N+ + + SG + +G+LE SN NS+ EM MI + + + + + Sbjct: 185 LGNNLFEADAGAQQIP-FSG-RILQGYLEGSNVNSVQEMVDMISVLRAYEANQKAFTIQD 242 Query: 232 KSMLEAIRNIA 242 +++ +A+ IA Sbjct: 243 ETLQKAVNEIA 253 >gi|147678415|ref|YP_001212630.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] gi|146274512|dbj|BAF60261.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] Length = 269 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 30/158 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G + + + R+ + +N++N +T+GF+ + F +V + Q I F + Sbjct: 1 MLRSLYAGASGLRSHQTRMDVIGNNIANVNTIGFKGSRANFQDV-------LYQTIRFGS 53 Query: 61 SGKEY----------LSKEV---------GSFISTGTELDFALEGDAWFALE---SPRGI 98 +G + L V G STG +LD A+ G+ WF ++ S + Sbjct: 54 AGSDNTGGVNKSQVGLGVTVASITNNTGPGGMQSTGRDLDLAINGNGWFMVKPDASQDEV 113 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 TR+G F + ++G LV+++G Y +LD++ IQ P + Sbjct: 114 YYTREGTFYIDNNGYLVNSNGYY-LLDVSGNTIQFPSE 150 >gi|226939374|ref|YP_002794447.1| Flagellar hook protein FlgE [Laribacter hongkongensis HLHK9] gi|226714300|gb|ACO73438.1| Flagellar hook protein FlgE [Laribacter hongkongensis HLHK9] Length = 526 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 68/118 (57%), Gaps = 12/118 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 +F GL+ A ++L + +N++N+ TVGF+ + +F+++ V A +N I Sbjct: 2 AFQHGLSGINAASKQLDAIGNNVANSSTVGFKGSRAEFADMFAANFYGVAATQNGIGVNT 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + +A +++ G+ +TG +LD A+ G+ +F +++ GI TR+G+F++ +G + Sbjct: 62 TLIA--QQFGQ---GNITTTGNQLDLAISGNGFFVMQNANGISYTRNGQFQIDREGYI 114 >gi|148380596|ref|YP_001255137.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 3502] gi|153932501|ref|YP_001384883.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. ATCC 19397] gi|153936688|ref|YP_001388352.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. Hall] gi|153938096|ref|YP_001391939.1| flagellar basal body rod protein FlgG [Clostridium botulinum F str. Langeland] gi|148290080|emb|CAL84199.1| putative flagellar basal-body rod protein [Clostridium botulinum A str. ATCC 3502] gi|152928545|gb|ABS34045.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 19397] gi|152932602|gb|ABS38101.1| flagellar basal body rod protein [Clostridium botulinum A str. Hall] gi|152933992|gb|ABS39490.1| flagellar basal body rod protein [Clostridium botulinum F str. Langeland] gi|295319959|gb|ADG00337.1| flagellar basal body rod protein [Clostridium botulinum F str. 230613] gi|322806968|emb|CBZ04538.1| flagellar basal-body rod protein FlgF [Clostridium botulinum H04402 065] Length = 255 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 33/252 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S ++ ++LE + T++ N+SN TVG+++ + F + + + D+K Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 56 ISFVASGKEYLSK--EVGSFIS------TGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I + G +K EV + + TG DFALEG +F +E+ TRDG F Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK-------GEISQKGKVIATMGL 160 V G LV+ SG Y V+ + ++ IF VG K G IS G + + Sbjct: 121 VDTRGYLVNDSG-YNVM---GINRNTGAREAIF-VGNKTIGTDASGNISLNGVPSYSFQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + ++ N P ++++G+ V++ LE SN N EM M+ + F Sbjct: 176 ADFNDYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSF 230 Query: 221 NS---ITTLIDE 229 + I IDE Sbjct: 231 ETNQKIVQSIDE 242 >gi|300817270|ref|ZP_07097488.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|307313519|ref|ZP_07593140.1| fagellar hook-basal body protein [Escherichia coli W] gi|300530246|gb|EFK51308.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|306906687|gb|EFN37198.1| fagellar hook-basal body protein [Escherichia coli W] gi|315059542|gb|ADT73869.1| flagellar hook protein [Escherichia coli W] gi|323171064|gb|EFZ56713.1| flgE [Escherichia coli LT-68] gi|323379899|gb|ADX52167.1| fagellar hook-basal body protein [Escherichia coli KO11] Length = 400 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|119953549|ref|YP_945759.1| flagellar basal body rod protein FlgG [Borrelia turicatae 91E135] gi|119862320|gb|AAX18088.1| flagellar basal-body rod protein FlgG [Borrelia turicatae 91E135] Length = 264 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 46/266 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------------VGAIKND 51 G+ AQ + + T+A+N+SN +T GF+ I+ +F ++ V + N Sbjct: 11 GMKAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQKRAGTPATEDTVSPLGNQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + A+ + + E G+ +T + D A+EGD ++ + P G TRDG FK+ Sbjct: 68 VGHGTKVSATHRIF---EQGNLQATNLKTDVAIEGDGFYKILLPDGTYGYTRDGSFKIDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVI 155 +G LV++ G Y +L S P + KD I + ++G IS K + + Sbjct: 125 NGDLVTSQG-YKLLPEISFPEEYI-KDSII-ISQEGIISVKVDGSPDPIELGQMEIARFV 181 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ + + +E G I TP G +++G LE SN + EM MI Sbjct: 182 NPAGLNAIGNN---IFKETIGSGEEISGTPGSSGMG-RLRQGILEMSNVSIAEEMVTMI- 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + Q+ I + + +ML N+ Sbjct: 237 VAQRAYEINSKAIQTSDNMLGIANNL 262 >gi|254227985|ref|ZP_04921415.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|151939481|gb|EDN58309.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] Length = 261 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 45/238 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----IDQKISFVASGK 63 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ +DQ ++ V SG Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQ-VNEVPSGI 66 Query: 64 EYLS-------KEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + S ++V G+ +T ELD A+ G +F +E+ G I+ TR+G+F V +G Sbjct: 67 QLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVG----------------EKGEISQKGKVIA 156 +V++ G P+ IQIP F+VG + G+I+ K I Sbjct: 127 LMVNSQG-LPL----EPQIQIPDNASSFSVGVDGTVTTTTADDPTPQQLGQIT-LAKFIN 180 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 GL +V G + RE P ED +G+ +K+G LE SN + EM MI Sbjct: 181 PAGLEAVG---GNLFRETEASGPADELIAGEDGAGL-IKQGALEGSNVQVVEEMVDMI 234 >gi|260853466|ref|YP_003227357.1| putative lateral flagellar hook protein [Escherichia coli O26:H11 str. 11368] gi|260866413|ref|YP_003232815.1| putative lateral flagellar hook protein [Escherichia coli O111:H- str. 11128] gi|257752115|dbj|BAI23617.1| predicted lateral flagellar hook protein [Escherichia coli O26:H11 str. 11368] gi|257762769|dbj|BAI34264.1| predicted lateral flagellar hook protein [Escherichia coli O111:H- str. 11128] gi|323158103|gb|EFZ44202.1| hypothetical protein ECEPECA14_0101 [Escherichia coli EPECa14] gi|323178494|gb|EFZ64072.1| hypothetical protein ECOK1180_3007 [Escherichia coli 1180] Length = 400 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F + +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|332296626|ref|YP_004438549.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] gi|332179729|gb|AEE15418.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] Length = 255 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 27/240 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ L+ + L VA+N+SN +T GF+ F++V + Q++SF Sbjct: 1 MDNSIFTAVSGALSSQSALDVVANNISNVNTTGFKESNPTFADV-------LSQELSFAT 53 Query: 61 SGKEYLSKEVGS-------------FISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 S L GS ++T DFA+ G +F + TRDG F Sbjct: 54 SRTNPLQIGAGSKLDSTSLSFTQGPVLTTNDPTDFAISGSGFFVVSDGTNTYYTRDGSFS 113 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEI-FNVGEKGEIS---QKGKVIATMGLYSV 163 + +G+LV+A G Y ++ I K+ + F V G + G+ + + V Sbjct: 114 LDSNGNLVTADGLYVQGTNGNINIDTTSKNFVNFTVKPDGSVYSNFSNGQSVLDGKIMVV 173 Query: 164 DM--SQGFVRRENSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D + + SP++ P+ +G ++ + LE SN + +M +I + + Sbjct: 174 DFINKNALINVGGNNFSPSVNSGNPVALSNGYSIIQNALEGSNTDLATQMANLIDYERTY 233 >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] gi|254040202|gb|ACT56998.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 15/137 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A R+S V+DN++N DTVG++ + FS +V ++ S+V+ G Sbjct: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSN-----SYVSGGL 60 Query: 64 EYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 E +K E GS + T + D A++G +F ++ + LTR G F + ++G L + + Sbjct: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120 Query: 119 G----KYPVLDMASVPI 131 G YP L AS P+ Sbjct: 121 GGVLLGYP-LKNASAPL 136 >gi|169826608|ref|YP_001696766.1| flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] gi|168991096|gb|ACA38636.1| Flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] Length = 280 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 59/273 (21%) Query: 16 EQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++R +++N++N +T GF R+ +G +Q+ +G EY+S Sbjct: 19 QRRTELLSNNLANANTPGFKADQSTIRSFPDMLMSSIGKTNAPANQQ-----AGAEYMS- 72 Query: 69 EVGSFISTGTEL-------------------DFAL------------EGDAWFALESPRG 97 +VG+ ++TGT L D AL G +F L P G Sbjct: 73 QVGA-LNTGTYLQETLPNYIQGQIYSTDFTTDMALIDGNLPQNEDGVTGSIFFRLAHPDG 131 Query: 98 -IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 TR+G F + G LV+ G Y VL+ A IQ+P D F + E G I + +A Sbjct: 132 GEAYTRNGNFTLDGQGYLVNGQGLY-VLNDAGQRIQLPNDD--FRLDESGAIYVNNQQVA 188 Query: 157 TMGL-YSVD------MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 +G+ Y+ + G +R EN N+P + T+++ FLE SN +S Sbjct: 189 RVGVSYAANPNMLQKQDNGLIRTENGA---NLPSAYGTNGVSFTLRQNFLEGSNVDSGRA 245 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + ++ ++SM +A+ I Sbjct: 246 MTDLMTAYRAFEANQKVLQAYDRSMEKAVNEIG 278 >gi|89098635|ref|ZP_01171517.1| flagellar hook protein [Bacillus sp. NRRL B-14911] gi|89086597|gb|EAR65716.1| flagellar hook protein [Bacillus sp. NRRL B-14911] Length = 270 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 32/258 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------V 59 G++ + +L + +N++N +T G++ +V F ++V + + V Sbjct: 14 GISGMKNFQTKLDVIGNNIANVNTFGYKKGRVTFKDMVSQTVSGATAGGAGVGGINPKQV 73 Query: 60 ASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 G + S + GS +TG LD ++GD +F ++ TR G F + G++V Sbjct: 74 GLGSQMSSIDTVDTQGSLQTTGRILDIGIQGDGYFRVQKGTNSYYTRAGNFYFDNSGNMV 133 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFN--VGEKGEIS--QKGKVIA--TMGLYSVDMSQG- 168 +ASG+ VL+ I IP +I N +G G IS Q G T+GL + G Sbjct: 134 TASGE-QVLNSNGTAINIPNISQIENLSIGADGSISFIQGGTSTTGPTIGLARFSNNGGL 192 Query: 169 -------FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + NSG + N+ P SG ++ G LE SN + E +MI + F Sbjct: 193 EKVGNNLYKSTANSGPAQNVLP----GTSGAGSLVSGSLEMSNVDLSEEFTEMIVAQRGF 248 Query: 221 NSITTLIDENEKSMLEAI 238 + T +I +++ + E + Sbjct: 249 QANTRIITTSDEILQELV 266 >gi|150019058|ref|YP_001311312.1| flagellar basal body rod protein FlgG [Clostridium beijerinckii NCIMB 8052] gi|149905523|gb|ABR36356.1| protein of unknown function DUF1078 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 255 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 40/243 (16%) Query: 5 FNIGLAAQL---ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 FNI A+ A +++L +++++ N T G+++ V F ++ + +D++ + Sbjct: 2 FNIFATAKSGMNAYQEKLDYLSNDLVNISTTGYKSTDVNFKDL---LTESLDRRGTPLVE 58 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 V G Y + + G+ ++TG + D A++G +FAL G I+ TRDG FK+ Sbjct: 59 KKAITGTGVKLGVNYANNKQGNLLTTGGKTDLAIDGKGYFALSKEDGSIVYTRDGNFKID 118 Query: 110 DDGSLVSASG-----KY--------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 +G+LV ++G +Y P LD + I KD ++ G++++ I Sbjct: 119 SNGALVDSNGTKVYVQYENGASEGNPALDREKMSI---DKDGGISMEVDGQVAK----IG 171 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 T+ +++ + F+ NS P+ + S +++G LE SN ++ ++ L Sbjct: 172 TIPIFTAIGDKSFIPIGNSYFVPS-SDAQVTLSSNYNIEQGMLEGSNVDAGETFSDIV-L 229 Query: 217 TQK 219 TQ+ Sbjct: 230 TQR 232 >gi|322806967|emb|CBZ04537.1| flagellar basal-body rod protein FlgG [Clostridium botulinum H04402 065] Length = 263 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 41/241 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KNDIDQKIS 57 GL AQ + +L ++++N++N +TVG++ V F E+V + +I Sbjct: 11 GLIAQ---QNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRPEIQTGTG 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 A+ + + G ++TG + D A++G +F + G R G F V +G LV Sbjct: 68 VKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMADGNYAYERSGNFVVDRNGMLVD 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEIF-----------NVGEKGEISQK-----GKVIATMGL 160 +G + + +Q P +I N+ E G IS K K++ + + Sbjct: 128 ENG-----NRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGINKMVGKINI 182 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMYEMGQMIHLTQ 218 Y+ S FV + G + IP + + V++ +GFLE+SN ++ EM +MI +TQ Sbjct: 183 YNAVGSDAFV---SIGRNLYIPQEGVNVFTNNDVSILQGFLENSNVDAGKEMTEMI-ITQ 238 Query: 219 K 219 + Sbjct: 239 R 239 >gi|225158947|ref|ZP_03725259.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] gi|224802442|gb|EEG20702.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] Length = 261 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 33/263 (12%) Query: 5 FNIGL---AAQL-ALEQRLSTVADNMSNTDTVGF--RTIKV--------------KFSEV 44 NIG+ AA L ALE+ V N+S++ T F RT++V F+ Sbjct: 1 MNIGIYQNAASLNALERWQDVVTQNISSSQTAAFKRRTVQVTGNYSGEFQLPRPTAFAPA 60 Query: 45 -VGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TR 102 GA + D + + +S G T ELD AL GD +F + G+IL TR Sbjct: 61 HPGATGSSGDTRRAVFPLTNINISLTPGEAQPTRGELDIALPGDGFFKVRDASGVILYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE----IFNVGEKGEISQKGKVIATM 158 G +++ + +LV+A G VL A PIQ+ + +FN + G ISQ +I + Sbjct: 121 AGSLQISPERTLVTAQG-MDVLSDADTPIQLETESTTSSLVFN--DDGTISQGETIIGRL 177 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G+ + + + + G+ P + + V +G++E SN + + EM +I +++ Sbjct: 178 GIVTF-ANPTLLTPISGGLFTAPPAAGPQQMDEPGVIQGYIESSNVSQLREMVDLITISR 236 Query: 219 KFNSITTLIDENEKSM---LEAI 238 + + +I + ++ LEA+ Sbjct: 237 AYEANQKMIQSRDDTIGKTLEAL 259 >gi|187918627|ref|YP_001884192.1| flagellar basal body rod protein FlgG [Borrelia hermsii DAH] gi|119861475|gb|AAX17270.1| flagellar basal-body rod protein FlgG [Borrelia hermsii DAH] Length = 265 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 120/264 (45%), Gaps = 42/264 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------------VGAIKND 51 G+ AQ + + T+A+N+SN +T GF+ I+ +F ++ V + N Sbjct: 11 GMKAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQRRAGTPATEDTVSPLGNQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + A+ + + E G+ +T D A+EG+ ++ + P G TRDG FK+ Sbjct: 68 VGHGTKVSATHRIF---EQGNLQATNLNTDVAIEGNGFYKILLPDGTYGYTRDGSFKIDA 124 Query: 111 DGSLVSASGKYPVLDMASVP-------IQIPQKDEI-FNVGEKGEISQKGKV-----IAT 157 +G+LV++ G Y +L S P I I Q+ I V E E + G++ + Sbjct: 125 NGALVTSQG-YKLLPDISFPEGYIKDSITISQEGIISVKVDESPEPIELGQMEIVRFVNP 183 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL ++ + + +E G I TP D G +++G LE SN + EM MI + Sbjct: 184 AGLNAIGNN---IFKETIGSGEEISGTPGSDGMG-RLRQGILEMSNVSIAEEMVTMI-VA 238 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + +ML N+ Sbjct: 239 QRAYEINSKAIQTSDNMLGIANNL 262 >gi|160896078|ref|YP_001561660.1| flagellar basal-body rod protein FlgF [Delftia acidovorans SPH-1] gi|160361662|gb|ABX33275.1| flagellar basal-body rod protein FlgF [Delftia acidovorans SPH-1] Length = 246 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 11/224 (4%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR S +A N++N T GFR F V ++ F G Sbjct: 14 AAAQRQSVLAHNLANAGTNGFRAEMSTFRSV--PLQGSGAGTRVFALEATSGYVDTPGPT 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G AWFA++ G TR+G F+V+ +G LV+++G+ VL PI Sbjct: 72 QRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQA-VLSDGGGPID 130 Query: 133 IPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 IP + I +G G ++ K + + L + VR N G+ PL Sbjct: 131 IPPESTI-TLGSDGTLTAKTGNQLPVAVGRVKLATPPEDTALVR-GNDGLFRTGDGDPLP 188 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + + G +E SN NS+ M MI ++F + L+ E Sbjct: 189 NDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAE 232 >gi|144897832|emb|CAM74696.1| flagellar basal body distal rod protein; FlgG [Magnetospirillum gryphiswaldense MSR-1] Length = 261 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 37/260 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 S NI LA + + +++N++N +T + + +FS++ VGA +D + Sbjct: 3 SLNIAATGMLAQQTNVEVISNNIANMNTTAYTKRRPEFSDLLYQNLRRVGAASSDAGTIV 62 Query: 57 SF-------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 V + Y E GS ST LD A++G + + P G TRDG F++ Sbjct: 63 PTGVQLGLGVKTTAVYRITEQGSVQSTDNTLDVAIQGKGYLQIRLPSGDTAYTRDGSFQL 122 Query: 109 TDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 ++ G +V+ G Y VL +VP I I ++ V G I Q V+ + L + Sbjct: 123 SEAGQIVTHEG-YTVLPGITVPNNAVGISINASGQVM-VKVDGSIDQT--VVGQLQLANF 178 Query: 164 DMSQGFVRRENS---------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G R ++ G+ P +P T+ +GFLE SN N + E+ +I Sbjct: 179 ANEAGLEARGDNLFLETPASGGVLAGNPGSPGYG----TLLQGFLETSNVNVVAEVTNLI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I +++ M Sbjct: 235 SAQRAYEMNSKVIQTSDEMM 254 >gi|145298492|ref|YP_001141333.1| flagellar basal body rod protein FlgF [Aeromonas salmonicida subsp. salmonicida A449] gi|142851264|gb|ABO89585.1| flagellar basal body rod protein FlgF [Aeromonas salmonicida subsp. salmonicida A449] Length = 248 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ +N++N +TVGF K+D +Q S A G+ S+ Sbjct: 19 LAVRGNNLANANTVGF--------------KSDFEQARSMQAFGEGLPSRVFAMTERPGQ 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G ++TG +LD A++G W A++ P+ G TR G +++ G+L +++G V+D Sbjct: 65 NLQHGMLMTTGRDLDVAVDGQGWIAVQDPKGGEAYTRMGNLQLSATGNLQTSTG-LNVVD 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEIS--------------QKGKVIATMGLYSVDMSQGFVR 171 PI +P E + G IS Q+ K++ +V+ Q + Sbjct: 124 DGGQPIVLPLPMEKIEINRDGTISGRPEGAAANLPEDFQRIKLVKPAA-DAVEKGQDGLF 182 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLID 228 R G + T V + G LE SN N + EM +I L ++F + I + Sbjct: 183 RRKDGQNEAASAT-------VGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAE 235 Query: 229 ENEKSMLEAIR 239 EN+++ + +R Sbjct: 236 ENDEAQTQLLR 246 >gi|116250500|ref|YP_766338.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae 3841] gi|115255148|emb|CAK06222.1| flagellar hook protein (agr_c_1012p) [Rhizobium leguminosarum bv. viciae 3841] Length = 433 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 22/117 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTVADN++N +T G++ + FS +V G ++ + Q +S Sbjct: 16 AQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVS------ 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ GD +F ++ G +LTR G F D+G+LV+A+G Sbjct: 70 -----DQGDISYTTSSTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAAG 121 >gi|222147375|ref|YP_002548332.1| flagellar hook protein FlgE [Agrobacterium vitis S4] gi|221734365|gb|ACM35328.1| flagellar hook protein [Agrobacterium vitis S4] Length = 411 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 15/118 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GL AQ +L+++ DN+SNT T G++ + FS +V S Sbjct: 13 GLTAQ---SNKLTSIGDNISNTSTTGYKGTETAFSSLVNG----------GTTSTTTQTV 59 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 + G ST +E D A++GD +F ++ G + LTR G F++ +DG LV++SG Y +L Sbjct: 60 SQSGDLESTSSETDLAIDGDGYFVVQDDEGDVFLTRQGDFEIDEDGYLVNSSG-YTLL 116 >gi|34497160|ref|NP_901375.1| flagellar basal-body rod protein FlgF [Chromobacterium violaceum ATCC 12472] gi|34103017|gb|AAQ59380.1| flagellar basal-body rod protein FlgF [Chromobacterium violaceum ATCC 12472] Length = 243 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 95/217 (43%), Gaps = 38/217 (17%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY------------LSKEV 70 A+N++N +T GFR DID +S G Y LS Sbjct: 23 ANNLANAETGGFRA--------------DIDTAVSQQVPGYGYDARLLSQNAPTALSDRN 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ + TG +LD AL+GD +FA+ +P G TR G DG+L S +G +PVL Sbjct: 69 GTVVETGRDLDIALQGDGFFAVSAPDGSEAYTRAGSMVAGPDGTL-SVNG-HPVLGDGG- 125 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATM------GLYSVDMSQGFVRRENSGISPNIPP 183 PI++P+ +V G IS A M L D + R + + P Sbjct: 126 PIRLPEGFLKVSVAADGTISVLNPDDAAMQPVDKLKLVKPDPREVGKRPDGLIAARQGGP 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P++D V V+ G LE SN +++ EM + L + F Sbjct: 186 LPVDD--SVRVQSGHLERSNVSAVEEMVSTMTLNRNF 220 >gi|294500931|ref|YP_003564631.1| flagellar hook protein FlgE [Bacillus megaterium QM B1551] gi|294350868|gb|ADE71197.1| flagellar hook protein FlgE [Bacillus megaterium QM B1551] Length = 264 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 13/161 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S G++ + +L + +N++N +T G++ + F ++V GA + Sbjct: 1 MLRSMYSGISGMKNFQTKLDVLGNNIANVNTYGYKKGRTTFQDLVSQQVAGATAPGANRG 60 Query: 51 DIDQKISFVAS--GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ K + S G + GS STG LD A+ GD +F + + TR G F + Sbjct: 61 GVNAKQVGLGSKIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVVNDGKSDYYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G+LV+ G Y V I IP + +++G G+++ Sbjct: 121 DSSGNLVTGDGLY-VQKTGGGNINIPSTSKSYSIGADGKVN 160 >gi|195952534|ref|YP_002120824.1| flagellar basal-body rod protein FlgG [Hydrogenobaculum sp. Y04AAS1] gi|195932146|gb|ACG56846.1| flagellar basal-body rod protein FlgG [Hydrogenobaculum sp. Y04AAS1] Length = 263 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--------DQKISFVAS 61 A A +Q L +++NM+N DTVG++ ++ F +++ D I + Sbjct: 10 AGMTAQQQNLDVISNNMANVDTVGYKQLQPVFDDLIYQTVKDPGMETSQNSQNPIGYQLG 69 Query: 62 GKEYLSKEVGSFI-----STGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 Y+ G F TG LD A++G+ +F + P G I TR+G+ ++ +G LV Sbjct: 70 LGAYIDGTYGIFTQGNVQQTGNPLDVAIQGNGFFQVAMPDGTIAYTRNGQLQLDANGDLV 129 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +A G + I +P N+G G ++ Sbjct: 130 TADGY-----LIQPQITVPPNATSVNIGPDGTVA 158 >gi|209547946|ref|YP_002279863.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533702|gb|ACI53637.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 433 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 22/117 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTVADN++N +T G++ + FS +V G +++ + Q +S Sbjct: 16 AQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGVQSSVRQAVS------ 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ GD +F ++ G +LTR G F D+G+LV+A+G Sbjct: 70 -----DQGDISYTTSGTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAAG 121 >gi|331671804|ref|ZP_08372600.1| LfgE [Escherichia coli TA280] gi|331070793|gb|EGI42152.1| LfgE [Escherichia coli TA280] Length = 400 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F + +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGDYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDAGTL 127 >gi|302185581|ref|ZP_07262254.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. syringae 642] gi|330953725|gb|EGH53985.1| flagellar basal body rod protein FlgF [Pseudomonas syringae Cit 7] Length = 246 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 35/249 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ ++ S Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVM--------PSRAYAMSE 60 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 61 RPGTDFSAGAMVQTGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG-L 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIAT---MGLYSVDMSQGFVRRE 173 PV+ PI +P + +I +G G IS + +V+A + L D+ + + Sbjct: 120 PVMGNGG-PIAVPPQQQI-EIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--MEKG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ +E+ Sbjct: 176 PDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAEED 235 Query: 231 EKSMLEAIR 239 ++SM ++ Sbjct: 236 DQSMARVLQ 244 >gi|149173758|ref|ZP_01852387.1| Flagellar biosynthesisprotein [Planctomyces maris DSM 8797] gi|148847288|gb|EDL61622.1| Flagellar biosynthesisprotein [Planctomyces maris DSM 8797] Length = 274 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 23/253 (9%) Query: 1 MQTSFNIGLAAQLALEQ--RLSTVADNMSNTDTVGF-RTIKV--------KFSEVVGAIK 49 +Q + + L+AQ A RL +++NM+N +T F R + + + + + Sbjct: 16 IQMIYGMYLSAQGAEANSVRLDVLSNNMANANTTSFKRDVPIFRVNPPHDQHEGALNPLP 75 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 D++ ++ E GS I+T +E D AL+G +F + + + LTR+G + Sbjct: 76 GDLENHSGGISLESITTDFEPGSLITTNSEFDLALKGQGFFQVGNAQESFLTRNGSLSID 135 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATMGLYSVDMS 166 D LV+A P+L I++P + + G ++ + + +G +V M Sbjct: 136 GDRRLVTADHGMPILTTDGREIKVPIEASHVAITPDGVVTPLDADDQPMGKLGQLAVVMP 195 Query: 167 QGFVRRENSGISPNIPPT-----PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 E I N+ T PLE + +GFLE S NS+ EM +++ ++ F Sbjct: 196 GAL--DELVKIGKNLYTTEGRVNPLE--GPANIAQGFLEASGTNSVEEMMELVTSSRMFE 251 Query: 222 SITTLIDENEKSM 234 S +I ++S+ Sbjct: 252 SNINMIKLQDESL 264 >gi|271500067|ref|YP_003333092.1| flagellar basal-body rod protein FlgF [Dickeya dadantii Ech586] gi|270343622|gb|ACZ76387.1| flagellar basal-body rod protein FlgF [Dickeya dadantii Ech586] Length = 251 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 23/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA LEQ+ T + NM+N T GFR V I+ ++ + V S + Sbjct: 11 AASQTLEQQAVT-SHNMANASTPGFRAQLAAMRAV--PIQGVTNETRTLVVSSTPGVDTT 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 GS TG +D AL D W A+ + G TR+G ++ +G L + G + D Sbjct: 68 PGSMDYTGRSMDVALSQDGWLAVRAADGSEAYTRNGNMEINSNGQL-TVQGNLVMGDGG- 125 Query: 129 VPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMG-LYSVDMSQGFVRRENSG---ISP 179 PI++P + ++ +G G I S + +G L V + V R + G +SP Sbjct: 126 -PIEVPPQTQL-TIGPDGTINALNPSDAANTVTQIGRLKLVKATANEVVRGDDGFFRVSP 183 Query: 180 NIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 + L++ + V V G LE SN N++ M +MI +++F + + +D+N + Sbjct: 184 AVQQQRGAVLQNDATVRVMPGVLEGSNVNTVESMVEMISNSRRFEMQMKVISSVDDNTQ 242 >gi|149189838|ref|ZP_01868118.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148836324|gb|EDL53281.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 261 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 115/242 (47%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV-------- 59 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ ++ V Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNQLPTGVQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 SG + + GS +TG +LD A+ G +F +E+ G I+ TR+G+F V +G Sbjct: 68 LGSGVRVVGTQKVFTQGSAQNTGQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATM 158 +V++ G P+ IQIP +VG G ++ K + Sbjct: 128 MVNSQG-LPL----EPQIQIPDNALTLSVGVDGTVTATTADGPAPQDLGQITLAKFVNPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + F E SG + + E+ +G ++K+G LE SN + EM MI + Sbjct: 183 GLEAIGGNL-FKETEASGQAEEL--IAGEEGAG-SIKQGALEGSNVQVVEEMVDMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|260429403|ref|ZP_05783380.1| flagellar basal-body rod protein FlgG [Citreicella sp. SE45] gi|260420026|gb|EEX13279.1| flagellar basal-body rod protein FlgG [Citreicella sp. SE45] Length = 261 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVA 60 G++AQ + R+ +++N+SN T G+ + +F+++ G I N D + + Sbjct: 10 GMSAQ---QMRVEVISNNLSNMSTTGYNARRAEFADLHYQQIARAGTI-NASDG--TMLP 63 Query: 61 SGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 +G + + E G+ TG +LD A+EG +F + P GI TRDG K Sbjct: 64 TGVQMGLGARPAAVTMKLEQGALSDTGGDLDIAIEGRGYFEVTLPSGIAGYTRDGALKRN 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 DG +V++ G PV S I IP ++ +GE+ + + +++ + Sbjct: 124 ADGMIVTSDG-LPV----SPEIVIPDDAISLSINAEGEVYAYFADAVQAQLLGQFTIVGF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +G F E SG P I T ++ G T ++G+LEDS+ + +YE+ ++I Sbjct: 179 TNPKGLEAIGGNLFTETEASG--PPIQTTAGQEGLG-TFRQGYLEDSSVDPVYEITELIE 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRGY 240 >gi|292492365|ref|YP_003527804.1| flagellar basal-body rod protein FlgG [Nitrosococcus halophilus Nc4] gi|291580960|gb|ADE15417.1| flagellar basal-body rod protein FlgG [Nitrosococcus halophilus Nc4] Length = 261 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKIS--F 58 GL AQ + R++ +++N++N +T GF+ + F +++ GA + Q S Sbjct: 11 GLDAQ---QTRMAVISNNLANVNTTGFKRGRAVFEDLLYQTVRQPGAQSSQNTQLPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G ++ E G T LD A++G +F + P G + TRDG F+V DG Sbjct: 68 LGTGVRTVATEKLFSQGGIAQTENPLDLAIQGRGFFQILMPDGSLAYTRDGTFQVDADGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATM 158 LV++SG YPV I IP+ VG G +S Q G V I Sbjct: 128 LVTSSG-YPV----EPRITIPEGALSVTVGSDGIVSVLVAGDTAPTQLGNVQLADFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 GL + + F +SG++ T + L+G T+ +G LE +N N + E+ MI Sbjct: 183 GLQPIGNNL-FKETASSGVA----QTGIPGLTGFGTLVQGALEGANVNVVEELVNMIETQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|203284669|ref|YP_002222409.1| flagellar hook-basal body complex protein [Borrelia duttonii Ly] gi|201084112|gb|ACH93703.1| flagellar hook-basal body complex protein [Borrelia duttonii Ly] Length = 282 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 114/262 (43%), Gaps = 60/262 (22%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A RL +A+N++N D G++ +++ F E++ ND D F Sbjct: 10 SGMIAQRHRLEVIANNLANIDLTGYKKDLSVQKAFPEMLIRRTND-DGLYKFPKGYLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y S E G TG LD AL + +F +++P G TR+G F + Sbjct: 69 PVVGKLGTGVEENEIYTSFEQGPLKITGNPLDLALTEEGFFVVQTPEGERYTRNGSFTLG 128 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG----------------- 152 +G L++ G YPV+ I KD F + E+G+I Sbjct: 129 REGILITKDG-YPVIGEKGY---IHIKDNNFKITEQGQIFHNSTFESNPKRLVSESENSW 184 Query: 153 ---KVIATMGLYSVDMSQGFVRR---------ENSGISPNIPPTPLEDLSGVTVKRGFLE 200 +++ + + + + ++ F+++ E SG + NIP S ++ G LE Sbjct: 185 ENYELLDNLKIVNFEKAR-FLKKQGSSLWYSTEISGQAKNIPIN-----SRPKIESGVLE 238 Query: 201 DSNANSMYEMGQMIHLTQKFNS 222 SN N++ EM MI + + + + Sbjct: 239 CSNVNAINEMVSMITVNRVYEA 260 >gi|59889780|emb|CAH19136.1| Lateral flagellar hook protein (FlgE-like) [Escherichia coli] gi|284920044|emb|CBG33101.1| lateral flagellar hook protein (FlgE-like) [Escherichia coli 042] Length = 400 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDSGTL 127 >gi|254488392|ref|ZP_05101597.1| flagellar basal-body rod protein FlgG [Roseobacter sp. GAI101] gi|214045261|gb|EEB85899.1| flagellar basal-body rod protein FlgG [Roseobacter sp. GAI101] Length = 261 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 44/258 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++AQ + R+ T+++N++N T G+ + +FS++ + + S AS L Sbjct: 10 GMSAQ---QMRVETISNNLANMSTTGYNARRAEFSDL---HYQQLARAGSVSASDGTVLP 63 Query: 68 KEV-----------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 V GS TG +LD A+EG + + P G TRDG K T Sbjct: 64 TGVQLGLGVRPAAVSMQLAQGSLSVTGGDLDLAIEGKGFLEVTLPSGQAAYTRDGGLKRT 123 Query: 110 DDGSLVSASGKYPVLDMASVP-----IQIPQKDEIF-----NVGEK--GEISQKGKVIAT 157 +G +V++ G +PV +P I I E+F N+ + G+ + G A Sbjct: 124 GEGLIVTSDG-FPVAPEIVIPEDARSISINASGEVFAYFDGNIAAQLLGQFTMSGFSNAK 182 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHL 216 GL ++ + FV E SG + + TP L+G+ T+++G+LEDS+ +++ E+ ++I Sbjct: 183 -GLEAIGGNL-FVETEASGAA--LVATP--GLNGLGTLRQGYLEDSSVDAVREITELIEA 236 Query: 217 TQKFNSITTLIDENEKSM 234 + + +I ++ M Sbjct: 237 QRGYEMNAKVISAADQMM 254 >gi|170758330|ref|YP_001787958.1| flagellar basal body rod protein FlgG [Clostridium botulinum A3 str. Loch Maree] gi|169405319|gb|ACA53730.1| flagellar basal body rod protein [Clostridium botulinum A3 str. Loch Maree] Length = 263 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 31/236 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KNDIDQKIS 57 GL AQ + +L ++++N++N +TVG++ V F E+V + +I Sbjct: 11 GLIAQ---QNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRQEIQTGTG 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVS 116 A+ + + G ++TG + D A++G +F + S R G F + +G LV Sbjct: 68 VKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMSDGNYAYERSGNFVIDRNGMLVD 127 Query: 117 ASG-KYPVLDMASVPIQIPQKDEIF-----NVGEKGEISQK-----GKVIATMGLYSVDM 165 +G + + + +QI + F N+ E G IS K K++ + +Y+ Sbjct: 128 ENGNRLEIQFQGTEGMQILNRIGGFSRNNINIAEDGSISVKDIDGINKMVGKINIYNAVG 187 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMYEMGQMIHLTQK 219 S FV + G + IP + + V++ +GFLE+SN ++ EM +MI +TQ+ Sbjct: 188 SDAFV---SIGRNLYIPQEGVNVFANNDVSILQGFLENSNVDAGKEMTEMI-ITQR 239 >gi|332533175|ref|ZP_08409044.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis ANT/505] gi|332037457|gb|EGI73911.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis ANT/505] Length = 455 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 29/155 (18%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 SFNI L A ++ L A+N++N +T GF+ + +F++V G KN + Sbjct: 2 SFNIALTGLAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSSGKTKNGDGVQT 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGS 113 + VA +++ GS T LD A+ G+ +FA+ S + + TR G FK+ D Sbjct: 62 TMVA--QQF---HQGSLQFTNNSLDLAITGEGYFAMTDDLSSQDLTYTRAGAFKLNQDNF 116 Query: 114 LVSASGK----YPV----LDMASV------PIQIP 134 +V A G +PV D SV PIQIP Sbjct: 117 MVDAKGNFLQAFPVDSSTGDTTSVSLSTTDPIQIP 151 >gi|293408367|ref|ZP_06652206.1| conserved hypothetical protein [Escherichia coli B354] gi|291471545|gb|EFF14028.1| conserved hypothetical protein [Escherichia coli B354] Length = 400 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDSGTL 127 >gi|71735751|ref|YP_275560.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627765|ref|ZP_06460719.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651644|ref|ZP_06482987.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aesculi str. 2250] gi|71556304|gb|AAZ35515.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325095|gb|EFW81164.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. glycinea str. B076] gi|320329354|gb|EFW85347.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. glycinea str. race 4] gi|330866424|gb|EGH01133.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880528|gb|EGH14677.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. glycinea str. race 4] gi|330889082|gb|EGH21743.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. mori str. 301020] gi|330986470|gb|EGH84573.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011044|gb|EGH91100.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 246 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 35/249 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ ++ S Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVM--------PSRAYAMSE 60 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 61 RPGTDFSAGAMVETGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG-L 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIAT---MGLYSVDMSQGFVRRE 173 PV+ PI +P + +I +G G IS + +V+A + L D+ + + Sbjct: 120 PVMGNGG-PIAVPPQQQI-EIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--MEKG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ +E+ Sbjct: 176 PDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAEED 235 Query: 231 EKSMLEAIR 239 ++SM ++ Sbjct: 236 DQSMARVLQ 244 >gi|229592130|ref|YP_002874249.1| flagellar hook protein FlgE [Pseudomonas fluorescens SBW25] gi|229363996|emb|CAY51545.1| putative flagellar hook protein [Pseudomonas fluorescens SBW25] Length = 434 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----NDIDQKISF 58 SFNIGL+ A ++L +N++N T GF++ + +FS++ A K N I ++ Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFSDIYAASKLGTGQNSIGNGVNL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSA 117 A +++ +V ++G LD A++G +F + G + TR G F+ DG + + Sbjct: 62 AAVSQQFTQGDVN---NSGGVLDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGYITNN 118 Query: 118 SG 119 +G Sbjct: 119 TG 120 >gi|168182721|ref|ZP_02617385.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|237796077|ref|YP_002863629.1| flagellar basal body rod protein FlgG [Clostridium botulinum Ba4 str. 657] gi|182674133|gb|EDT86094.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|229261217|gb|ACQ52250.1| flagellar basal body rod protein [Clostridium botulinum Ba4 str. 657] Length = 263 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 41/241 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KNDIDQKIS 57 GL AQ + +L ++++N++N +TVG++ V F E+V + +I Sbjct: 11 GLIAQ---QNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRPEIQTGTG 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVS 116 A+ + + G ++TG + D A++G +F + S R G F + +G LV Sbjct: 68 VKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMSDGNYAYERSGNFVIDRNGMLVD 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEIF-----------NVGEKGEISQK-----GKVIATMGL 160 +G + + +Q P +I N+ E G IS K K++ + + Sbjct: 128 ENG-----NRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGINKMVGKINI 182 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMYEMGQMIHLTQ 218 Y+ S FV + G + IP + + V++ +GFLE+SN ++ EM +MI +TQ Sbjct: 183 YNAVGSDAFV---SIGRNLYIPQEGVNVFANNDVSILQGFLENSNVDAGKEMTEMI-ITQ 238 Query: 219 K 219 + Sbjct: 239 R 239 >gi|330875985|gb|EGH10134.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 246 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 35/249 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ + + ++ SG Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVMPSRAYAMSERPGTDFSG 68 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 69 --------GAMVQTGRELDIAIKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG-L 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIAT---MGLYSVDMSQGFVRRE 173 PV+ PI +P + +I +G G IS + +V+A + L D+ + + Sbjct: 120 PVMGNGG-PIAVPPQQQI-EIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--MEKG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 G+ P + V V+ GFL+ SN N++ EM ++ L+++F ++ +E+ Sbjct: 176 PDGLIHTKSGQPAAADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAEED 235 Query: 231 EKSMLEAIR 239 ++SM ++ Sbjct: 236 DQSMARVLQ 244 >gi|306813303|ref|ZP_07447496.1| flagellar basal body FlaE domain-containing protein [Escherichia coli NC101] gi|305854066|gb|EFM54505.1| flagellar basal body FlaE domain-containing protein [Escherichia coli NC101] Length = 400 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|330967092|gb|EGH67352.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. actinidiae str. M302091] Length = 246 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 35/249 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ + + ++ SG Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVMPSRAYAMSERPGTDFSG 68 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 69 --------GAMVETGRELDIAIKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG-L 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIAT---MGLYSVDMSQGFVRRE 173 PV+ PI +P + +I +G G IS + +V+A + L D+ + + Sbjct: 120 PVMGNGG-PIAVPPQQQI-EIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--MEKG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 G+ P + V V+ GFL+ SN N++ EM ++ L+++F ++ +E+ Sbjct: 176 PDGLIHTKSGQPAAADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAEED 235 Query: 231 EKSMLEAIR 239 ++SM ++ Sbjct: 236 DQSMARVLQ 244 >gi|206890777|ref|YP_002249848.1| flagellar basal-body rod protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742715|gb|ACI21772.1| flagellar basal-body rod protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] Length = 262 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 18/137 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + L ++ N++N +T GF+ + +F +++ GA +D Q S + Sbjct: 11 GMYAQ---QLNLDVISHNLANVNTTGFKKGRAEFQDLLYQNVINPGAPSDDGTQYPSGIQ 67 Query: 61 SGKEYLSKEVGSF------ISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 G V F I+TG +LD A++GD +F + P G I TR G F++ DG Sbjct: 68 VGLGVRPVAVAKFFTPGDLINTGNDLDLAIDGDGFFQVTLPDGTIAYTRAGNFRIDKDGR 127 Query: 114 LVSASGKYPVLDMASVP 130 +V+ G YP+ +VP Sbjct: 128 IVTNDG-YPIEPGITVP 143 >gi|188494513|ref|ZP_03001783.1| Flagellar basal body protein FlgE [Escherichia coli 53638] gi|188489712|gb|EDU64815.1| Flagellar basal body protein FlgE [Escherichia coli 53638] Length = 400 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|331666546|ref|ZP_08367420.1| LfgE [Escherichia coli TA271] gi|331065770|gb|EGI37654.1| LfgE [Escherichia coli TA271] Length = 400 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|170758901|ref|YP_001787959.1| flagellar basal body rod protein FlgG [Clostridium botulinum A3 str. Loch Maree] gi|169405890|gb|ACA54301.1| flagellar basal body rod protein [Clostridium botulinum A3 str. Loch Maree] Length = 255 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 33/252 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S ++ ++LE + T++ N+SN TVG+++ + F + + + D+K Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 56 ISFVASGKEYLSK--EVGSFIS------TGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I + G +K EV + + TG DFALEG +F +E+ TRDG F Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK-------GEISQKGKVIATMGL 160 V G LV+ SG Y V+ + ++ IF VG K G IS G + + Sbjct: 121 VDTRGYLVNDSG-YNVM---GINRNTGAREAIF-VGNKTIGTDASGNISLNGVPSYSFQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + ++ N P ++++G+ V++ LE SN N EM M+ + F Sbjct: 176 ADFNDYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSF 230 Query: 221 NS---ITTLIDE 229 + I IDE Sbjct: 231 ETNQKIVQSIDE 242 >gi|170681389|ref|YP_001742373.1| lateral flagellar hook protein LfgE [Escherichia coli SMS-3-5] gi|170519107|gb|ACB17285.1| lateral flagellar hook protein LfgE [Escherichia coli SMS-3-5] Length = 400 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|307718427|ref|YP_003873959.1| flagellar hook-basal body complex protein [Spirochaeta thermophila DSM 6192] gi|306532152|gb|ADN01686.1| flagellar hook-basal body complex protein [Spirochaeta thermophila DSM 6192] Length = 280 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 109/255 (42%), Gaps = 47/255 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF------ 58 G+A+QL R+ +A+N++N D G++ I F E++ ND KI + Sbjct: 11 GMASQL---NRMDAIANNLANVDLTGYKRDTAIFKAFPELLIRRMNDRYFKIPWGSIDNT 67 Query: 59 ---------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 V + + Y E G T FALEG +F + +P+G TR+G F + Sbjct: 68 PVVGKLGTGVETNEVYTVFEQGPLKETKDPFHFALEGQGFFTVLTPQGERYTRNGSFILG 127 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK---------------- 153 +G LV+ G YPV+ + I+I K F V E G I Q + Sbjct: 128 PEGLLVTKEG-YPVVGENGL-IRI--KANNFVVDEDGRIFQNARFAEDPDRLVALEENEW 183 Query: 154 ----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS--GVTVKRGFLEDSNANSM 207 ++ + + +V + ++ +S E L V++GFLE SN N + Sbjct: 184 DETELVDRLKIVNVRRPRYLQKQGDSLWRTTRESGEAEILQEGRPKVRQGFLEGSNVNPV 243 Query: 208 YEMGQMIHLTQKFNS 222 EM QMI + + + + Sbjct: 244 TEMVQMIEVNRAYEA 258 >gi|34498340|ref|NP_902555.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] gi|34104194|gb|AAQ60553.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] Length = 416 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 9/123 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFV 59 F GL+ A +L ++ +N++N +TVGF++ + +F + + G N +S + Sbjct: 3 FQQGLSGINAASVQLDSIGNNVANANTVGFKSSRTEFGDLYAQSIFGTAANSPGNGVSVL 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 A + G+ +TG LD A+ + +F + P G +RDG+F+V G LV++ Sbjct: 63 A---VTANMSAGNTENTGRSLDLAINNNGFFIMNQPNGTQTYSRDGQFQVNSQGYLVNSY 119 Query: 119 GKY 121 G Y Sbjct: 120 GAY 122 >gi|145297456|ref|YP_001140297.1| lateral flagellar basal-body rod protein LfgG [Aeromonas salmonicida subsp. salmonicida A449] gi|142850228|gb|ABO88549.1| lateral flagellar basal-body rod protein LfgG [Aeromonas salmonicida subsp. salmonicida A449] Length = 261 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQK-------- 55 GL+AQ A +++++++N++N +TVGF+ +V F ++ ++ DQ+ Sbjct: 11 GLSAQDA---KMASISNNLANVNTVGFKRDRVAFEDLFYQVQRQPGAQQDQQNLSPIGIQ 67 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G F +T ELD A+ G +F +E P G TR+G++ Sbjct: 68 MGNGVRVVGTQKVFTP---GQFQNTNQELDMAVVGAGFFGVERPDGETAYTRNGQWHRNA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIAT--- 157 +G LV++ G P+L IQIP ++G G +S + G++ T Sbjct: 125 EGLLVNSDG-LPMLPQ----IQIPDNATKVSIGTDGTVSATLPGQQENVELGRITLTNFT 179 Query: 158 --MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ G + R I P E+ G +K+ LE SN N + EM MI Sbjct: 180 NPAGLEALG---GNLYRATGASGEAIEGVPGEEAMGA-IKQFTLESSNVNVVEEMVDMIT 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|256020228|ref|ZP_05434093.1| flagellar basal body FlaE domain-containing protein [Shigella sp. D9] gi|332281390|ref|ZP_08393803.1| lateral flagellar hook protein [Shigella sp. D9] gi|332103742|gb|EGJ07088.1| lateral flagellar hook protein [Shigella sp. D9] Length = 400 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|323191538|gb|EFZ76799.1| flgE [Escherichia coli RN587/1] Length = 400 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGDYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDSGTL 127 >gi|331645418|ref|ZP_08346522.1| LfgE [Escherichia coli M605] gi|331045580|gb|EGI17706.1| LfgE [Escherichia coli M605] Length = 400 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|301645413|ref|ZP_07245354.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|307136858|ref|ZP_07496214.1| flagellar basal body FlaE domain-containing protein [Escherichia coli H736] gi|331640713|ref|ZP_08341860.1| LfgE [Escherichia coli H736] gi|301076297|gb|EFK91103.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|315616827|gb|EFU97444.1| flgE [Escherichia coli 3431] gi|323181547|gb|EFZ66967.1| flgE [Escherichia coli 1357] gi|331040087|gb|EGI12295.1| LfgE [Escherichia coli H736] Length = 400 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|239815248|ref|YP_002944158.1| hypothetical protein Vapar_2263 [Variovorax paradoxus S110] gi|239801825|gb|ACS18892.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 259 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/243 (22%), Positives = 107/243 (44%), Gaps = 24/243 (9%) Query: 18 RLSTVADNMSNTDTVGF-RTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI-- 74 RL ++ NM+N T G+ R + GA + + + + +G+ S G+ + Sbjct: 18 RLERISMNMANATTPGYKREVASSLQVGAGAFSDALREARASTLAGRAAGSPAAGTLLVQ 77 Query: 75 ---------STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 STG LD AL +F + + G+ TR G +++ G LV+A G +PV+ Sbjct: 78 TDARPGSLKSTGQSLDVALTAAGFFEVSTDAGLAYTRQGSWQLDARGRLVTAQG-HPVMG 136 Query: 126 MASV-------PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 + P+ I ++F G + + + + + + F R + Sbjct: 137 VGGEIVLSRPNPV-IDASGQVFESKPGG--GAESTPVGQLKVVRFENTDDFQRMGGGLMR 193 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P + + + V +++GF+E+SN +SM EM Q+I + F S+ + ++ + A+ Sbjct: 194 TEQQPAQVAE-ADVQLRQGFVENSNVSSMQEMAQLIQSMRHFESMQRVALGYDEMIGGAV 252 Query: 239 RNI 241 R + Sbjct: 253 RKL 255 >gi|206558970|ref|YP_002229730.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia J2315] gi|198035007|emb|CAR50879.1| flagellar basal-body rod protein FlgG (distal rod protein) [Burkholderia cenocepacia J2315] Length = 262 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 47/276 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++NT T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y G TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GGLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----I 155 RDG F+ G LV++SG Y VL I +PQ + +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVLPA----ITVPQNAQSLTIGKDGVVSVTQPGSSNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 ++ + + G F +SG +PN+ P + +GV + +G++E SN N + Sbjct: 171 GSLQIATFINPAGLEAKGENLFAETTSSG-APNV-SQPGLNGAGV-LNQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|167905091|ref|ZP_02492296.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei NCTC 13177] Length = 241 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 12/207 (5%) Query: 19 LSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 ++ A+NM+N T GFR +++ S+ V D ++ A+ L+ E G + TG Sbjct: 19 IAVHANNMANAQTDGFRAELEMAESQPVRGYGYDSRHLLNPRANA---LNGEAGVVVDTG 75 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ELD A+ G +F +++ TR G F++ DG+L + +G+ PV+ PI +P+ Sbjct: 76 RELDAAINGGGYFTVDAQGSEAYTRAGNFEIDADGAL-TVNGR-PVIGEGG-PIVLPEFT 132 Query: 138 EIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + +GE G IS +V A L VD + + +G+ PL + V Sbjct: 133 SL-RIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAGLLVARDGQPLPASNEVK 191 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKF 220 V G LE SN + + EM + L + F Sbjct: 192 VLGGHLERSNVSPVEEMIATMSLNRAF 218 >gi|117619599|ref|YP_857341.1| flagellar basal body rod protein FlgG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561006|gb|ABK37954.1| flagellar basal-body rod protein FlgG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 262 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 111/245 (45%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + +S ++N++N TVG++ + F +++ G D ++ Sbjct: 11 GLDAQ---QTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADTERPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F + +G+ Sbjct: 68 LGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLNSEGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQ 167 +V+ YP+ IQIP+ + +GE G++S + K V+ + + Sbjct: 128 IVTPGNGYPL----QPEIQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDFVNAS 183 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G FV ++SG P++ ++G +K+G LE SN N E+ +I Sbjct: 184 GLQPMGENMFVETQSSG-------APVQGVAGTDGLGVIKQGMLETSNVNVTEELVNLIQ 236 Query: 216 LTQKF 220 + + Sbjct: 237 AQRVY 241 >gi|92114096|ref|YP_574024.1| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043] gi|91797186|gb|ABE59325.1| Flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043] Length = 260 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 39/253 (15%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF--VASGKEYLSK 68 +L +++N+SN T GF+ + F +++ GA + +D S V +G ++ Sbjct: 18 KLDVISNNLSNVSTNGFKRSRPVFEDLLYQNVRQPGAQASAVDTLPSGLQVGTGVRPVAT 77 Query: 69 E----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPV 123 E G +T D A+ G +FA++ P G TRDG F++ ++G +V+A G YP+ Sbjct: 78 ERLHTQGGLQNTDNSKDLAINGQGFFAVQMPDGTSAYTRDGSFQIDENGQMVTAGG-YPL 136 Query: 124 LDMASVPIQIPQ--------KDEIFNVGEKGEISQK-------GKVIATMGLYSVDMSQG 168 PI IP+ +D + +V + G+ + + K I GL S+ + Sbjct: 137 ----DPPIVIPENALSVSISQDGVVSVTQPGDTAAQEVGQLTLSKFINPAGLQSMGEN-- 190 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + +E P P + +G + +G++E SN N + EM MI TQ+ I + Sbjct: 191 -LYQETDASGPRNDLIPGMEGAG-RLYQGYVETSNVNVVEEMVSMIE-TQRAYEINSKAV 247 Query: 229 ENEKSMLEAIRNI 241 E ML + + Sbjct: 248 ETSDQMLSRLTQL 260 >gi|330961200|gb|EGH61460.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. maculicola str. ES4326] Length = 246 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 35/249 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ + + ++ SG Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVMPSRAYAMSERPGTDFSG 68 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 69 --------GAMVQTGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG-L 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIAT---MGLYSVDMSQGFVRRE 173 PV+ PI +P + +I +G G IS + +V+A + L D+ + + Sbjct: 120 PVMGNGG-PIAVPPQQQI-EIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--MEKG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ +E+ Sbjct: 176 PDGLIHTKTGRPADVDATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAEED 235 Query: 231 EKSMLEAIR 239 ++SM ++ Sbjct: 236 DQSMARVLQ 244 >gi|251772413|gb|EES52980.1| flagellar basal body rod protein [Leptospirillum ferrodiazotrophum] Length = 265 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/251 (21%), Positives = 93/251 (37%), Gaps = 68/251 (27%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------------------------GA 47 EQ + ++ N++N +T GFR +V F + G Sbjct: 16 EQMMDVLSSNLANVNTPGFRKDRVMFRSYLPHREYLHRTPPDRPGFNLTPFGTFPTPWGM 75 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 +DI + Y+ E G F STG LD AL G + + +P G +LTR+G Sbjct: 76 AGSDIPHS----GVDRIYVRYEEGEFQSTGNPLDVALSGKGFLTVRTPGGTLLTRNGHLT 131 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 V G L + G +P++ + I +P + + G++ KV+ + + + Sbjct: 132 VDSQGRLTTHEG-HPLVGVDGKEIHLPSGVDPIRIDSAGKVFSGEKVVGQLAISA----- 185 Query: 168 GFVRRENSGISPNIPPTPLEDLSGV----------------TVKRGFLEDSNANSMYEMG 211 P P+E L+ V V+ G +E SN EM Sbjct: 186 --------------PAGPMEHLTKVGDGLFFSPDGLVKGEAVVRNGGVEGSNVKGTSEMV 231 Query: 212 QMIHLTQKFNS 222 +MI + + + Sbjct: 232 RMIQGMRTYQT 242 >gi|206889889|ref|YP_002248123.1| flagellar hook protein FlgE [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741827|gb|ACI20884.1| flagellar hook protein FlgE [Thermodesulfovibrio yellowstonii DSM 11347] Length = 434 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 9/125 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M TS G++ A LS + DN++N +TVGF+ + F++++ GA + + Sbjct: 1 MLTSLFTGISGLNANGLALSVIGDNIANANTVGFKASRANFADILSQTLGGASAMQVGRG 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 + K + G+ +T LD A+EGD +F ++ P G TR G+F+V DG + Sbjct: 61 TMIIDIQKLFTQ---GTLETTSNPLDLAIEGDGFFVVQQPNGPTYYTRAGQFRVNKDGYI 117 Query: 115 VSASG 119 V +G Sbjct: 118 VDPNG 122 >gi|83721615|ref|YP_440803.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|167579490|ref|ZP_02372364.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis TXDOH] gi|167617587|ref|ZP_02386218.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis Bt4] gi|257140546|ref|ZP_05588808.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|83655440|gb|ABC39503.1| flagellar basal-body rod protein FlgG [Burkholderia thailandensis E264] Length = 262 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 45/274 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y GS TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GSLTQTGNSKDVAINGQGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VI 155 RDG F+ G LV++SG Y V+ I IPQ +G G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVIPA----ITIPQNATSLTIGSDGVVSVTQPGSNNAVQI 170 Query: 156 ATMGLYSVDMSQGF-VRREN------SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + + + G R EN S +PN+ L T+K+G++E SN N + Sbjct: 171 GALQIATFINPAGLDARGENLFAETTSSGAPNVSQPGLNGAG--TLKQGYVEASNVNVVQ 228 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E+ MI TQ+ I + ML+ + ++ Sbjct: 229 ELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMS 261 >gi|126445461|ref|YP_001061247.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 668] gi|167725931|ref|ZP_02409167.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei DM98] gi|254182893|ref|ZP_04889486.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1655] gi|254299685|ref|ZP_04967134.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 406e] gi|126224952|gb|ABN88457.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 668] gi|157809369|gb|EDO86539.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 406e] gi|184213427|gb|EDU10470.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1655] Length = 241 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 12/207 (5%) Query: 19 LSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 ++ A+NM+N T GFR +++ S+ V D ++ A+ L+ E G + TG Sbjct: 19 IAVHANNMANAQTDGFRAELEMAESQPVRGYGYDSRHLLNPRANA---LNGEAGVVVDTG 75 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ELD A+ G +F +++ TR G F++ DG+L + +G+ PV+ PI +P+ Sbjct: 76 RELDAAINGGGYFTVDAQGSEAYTRAGNFEIDADGAL-TVNGR-PVIGEGG-PIVLPEFT 132 Query: 138 EIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + +GE G IS +V A L VD + + +G+ PL + V Sbjct: 133 SL-RIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAGLLVARDGQPLPASNEVK 191 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKF 220 V G LE SN + + EM + L + F Sbjct: 192 VLGGHLERSNVSPVEEMIATMSLNRAF 218 >gi|326202442|ref|ZP_08192311.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] gi|325987560|gb|EGD48387.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] Length = 270 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 128/266 (48%), Gaps = 40/266 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY-L 66 G+ AQ + + +++N++N +T G++ + +F ++ + +D+ GK L Sbjct: 11 GMKAQ---QFNVDVISNNLANVNTTGYKKERAEFKDL---LYQTMDRAYVLNGGGKPVNL 64 Query: 67 SKEVGSFIS-------------TGTELDFALEGDAWFALESPRGII-LTRDGRFK--VTD 110 G+ +S TG+ LDFA++G+ +F + P+G + TRDG FK +T+ Sbjct: 65 QVGHGTVVSSTIRNFENGTPEQTGSTLDFAIDGEGFFTIMGPQGTVKYTRDGSFKLSITE 124 Query: 111 DG-SLVSASGKYPVLDMASVPIQI-PQ-KDEIFNVGEKGEISQKGK------VIATMGL- 160 DG ++ S Y VLD + I P+ K +V +GE+S K + T+G+ Sbjct: 125 DGMKKLTTSDGYAVLDNSGGEILFDPEVKTSELSVSPRGEMSYKNAEGVSVPMDQTIGMV 184 Query: 161 -----YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 Y+++ + NS + + E+ + +K+GFLE SN + EM ++I Sbjct: 185 TFPNKYALEAVGNNLYSSNSATGEPLQVSEDENAKSI-MKQGFLESSNVQVVDEMVKLI- 242 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + Q+ +++ ++ ML+ N+ Sbjct: 243 VAQRAYEVSSKAIQSSDDMLQIANNL 268 >gi|260779345|ref|ZP_05888237.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] gi|260605509|gb|EEX31804.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] Length = 261 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----IDQKISFVA--- 60 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ +DQ A Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGALVDQVNELPAGVQ 67 Query: 61 --SGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 SG + + G+ +T ELD A+ G +F +E+ G I+ TR+G+F V +G Sbjct: 68 LGSGVRVVGTQKVFTQGNTQNTSQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATM 158 +V++ G P+ IQIP+ +VG G +S K I Sbjct: 128 MVNSQG-LPL----EPQIQIPENALSVSVGVDGTVSATTADSTAPQELGQITLAKFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL +V G + RE ED G ++K+G LE SN + EM MI + Sbjct: 183 GLEAVG---GNLFRETEASGQADELIAGEDGVG-SIKQGSLEGSNVQVVEEMVDMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|226950051|ref|YP_002805142.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] gi|226842618|gb|ACO85284.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] Length = 255 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 33/252 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S ++ ++LE + T++ N+SN TVG+++ + F + + + D+K Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 56 ISFVASGKEYLSK--EVGSFIS------TGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I + G +K EV + + TG DFALEG +F +E+ TRDG F Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK-------GEISQKGKVIATMGL 160 V G LV+ SG Y V+ + ++ IF VG K G IS G + + Sbjct: 121 VDTRGYLVNDSG-YNVM---GINRNTGAREAIF-VGNKTIGTDASGNISLNGVPSYSFQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + ++ N P ++++G+ V++ LE SN N EM M+ + F Sbjct: 176 ADFNDYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSF 230 Query: 221 NS---ITTLIDE 229 + I IDE Sbjct: 231 ETNQKIVQSIDE 242 >gi|160896077|ref|YP_001561659.1| flagellar basal-body rod protein FlgG [Delftia acidovorans SPH-1] gi|160361661|gb|ABX33274.1| flagellar basal-body rod protein FlgG [Delftia acidovorans SPH-1] Length = 260 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 50/242 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ---------KIS 57 A + +L ++ N++N T G++ F +++ GA + +Q + Sbjct: 14 AQQTQLDVISHNLANVSTTGYKRASAVFEDLIYQNLRQSGAQTTEQNQLPTGLHLGLGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ + +L G+ + LD A++G+ +F + P G TRDG F+V G LV+ Sbjct: 74 TVATSRNFLQ---GALQQSNNALDVAIDGNGFFQVNMPDGTTAYTRDGSFQVDAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-------LYSVDMSQGF 169 ASG P+ + ++P K IS +G V TM + ++ MSQ F Sbjct: 131 ASG-MPIANGVTIP----------QGATKVSISPEGVVSVTMAGQAAPQQVGNIAMSQ-F 178 Query: 170 V-------RRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQ 218 + R +N P + GV +K+G+LE SN N + E+ MI + Sbjct: 179 INPAGLEPRGQNLFTETASSGQPQQGQPGVNGMGMIKQGYLEGSNVNVVQELVTMIQTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|332187894|ref|ZP_08389627.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17] gi|332012055|gb|EGI54127.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17] Length = 251 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 72/260 (27%), Positives = 110/260 (42%), Gaps = 53/260 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA-SGKEYL 66 G+ + +A + S +A+NM+N T+GFR +V F ID K A + Sbjct: 11 GMRSHMAAQ---SAIANNMANASTIGFRADRVVFDR--------IDLKGGGAAFEARMPT 59 Query: 67 SKEV-------GSFISTGTELDFALE-GDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 ++EV G+ TG LD A+ AW A+++P G TR G +VT G L + Sbjct: 60 AEEVTDADRAPGTVQHTGNPLDVAIATSSAWLAVQAPDGSEAYTRRGDLEVTASGVLQTG 119 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------QKGKVIATMGLYSVDMSQ- 167 G YPV+ PI +P + + V G +S + +VI M L +SQ Sbjct: 120 DG-YPVIGQNG-PITVPPYNSLA-VSPDGTVSIIPLGAGPDTQAQVIDRMKLADARVSQT 176 Query: 168 -----GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +R + G P +D+ TV+ G LE SN N + MI + + Sbjct: 177 VKGLDNLLRVKGGGALP-------QDMD-ATVQSGALEGSNVNMAQTLVDMIENQRSYEV 228 Query: 223 ITTL------IDENEKSMLE 236 L +DEN S++ Sbjct: 229 QANLMKEAKSMDENSASLMR 248 >gi|74101660|gb|AAZ99750.1| FlgGL [Aeromonas hydrophila] Length = 275 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQK-------- 55 GL+AQ A +++++++N++N +TVGF+ +V F ++ ++ DQ+ Sbjct: 25 GLSAQDA---KMASISNNLANVNTVGFKRDRVAFEDLFYQVQRQPGAQQDQQNLSPIGIQ 81 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G F +T ELD A+ G +F +E P G TR+G++ Sbjct: 82 MGNGVRVVGTQKVFTP---GQFQNTNQELDMAVVGAGFFGVERPDGETAYTRNGQWHRNA 138 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIAT--- 157 +G LV++ G P+L IQIP ++G G +S + G++ T Sbjct: 139 EGLLVNSDG-LPMLPQ----IQIPDNATKVSIGTDGTVSATLPGQQENVELGRITLTNFT 193 Query: 158 --MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ G + R I P E+ G +K+ LE SN N + EM MI Sbjct: 194 NPAGLEALG---GNLYRATGASGEAIEGVPGEEAMGA-IKQFTLESSNVNVVEEMVDMIT 249 Query: 216 LTQKF 220 + + Sbjct: 250 TQRAY 254 >gi|284041496|ref|YP_003391836.1| flagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945717|gb|ADB48461.1| flagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 245 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 18/229 (7%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL------SKEVG 71 R+ V+++++N T G++ ++V F +++ + DQ V +G S++ G Sbjct: 18 RIDGVSNDLANISTPGYKGVRVGFRDLL--YNSQGDQAGETVTAGAGSAASFIGRSQQQG 75 Query: 72 SFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 + ++T LD ++EG +F L + GI LTRDG F++ G + S+ G + S P Sbjct: 76 AVLTTDQPLDVSIEGSGFFQLRRADGGIALTRDGSFRLDPLGRVTSSDGL-----LLSPP 130 Query: 131 IQIPQKDEI--FNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 + +P+ I +G G + G+ I + L +V G ++ + Sbjct: 131 VTVPRNTPIDRIAIGADGTVRVNDGQQIGRIQLVTVTSPDGLRALGDNRFAVTPESGAAT 190 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 +G T+++G LE SN + M M++ + F + I ++ MLE Sbjct: 191 ATNGATLRQGTLEGSNVDMSDAMVDMMNAQRAFQLASRAIHMQDQ-MLE 238 >gi|259417939|ref|ZP_05741858.1| flagellar basal-body rod protein FlgG [Silicibacter sp. TrichCH4B] gi|259346845|gb|EEW58659.1| flagellar basal-body rod protein FlgG [Silicibacter sp. TrichCH4B] Length = 261 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFV- 59 G++AQ + R+ T+++N++N +T + + +F+++ G + N D + Sbjct: 10 GMSAQ---QLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTV-NASDGTVLPTG 65 Query: 60 ---------ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 A+ YL++ G+ TG ELD A++G+ +F + P G TRDG FK + Sbjct: 66 VQVGLGVRPAAVSVYLNQ--GALSQTGNELDVAIDGNGYFEVTLPSGETAYTRDGSFKRS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 +G +V+ G YPV S I IP+ ++ +GE+ + + +++ + L Sbjct: 124 AEGLIVTNDG-YPV----SPEITIPEDANSISINAEGEVYAYFNDTVEAELLGQLTLSGF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +G F + E SG PN P D G T+++ +LEDS+ +++ E+ ++I Sbjct: 179 TNPKGLEAVGSNLFKQTEASG-QPNTTE-PGADGVG-TLRQKYLEDSSVDAVREITELIE 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRGY 240 >gi|315122284|ref|YP_004062773.1| flagellar hook protein FlgE [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495686|gb|ADR52285.1| flagellar hook protein FlgE [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 422 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+T+ + G+ AQ R+S V+DN++N +T+G++ V FS +V Sbjct: 7 MKTAMS-GMDAQ---SNRVSAVSDNIANVNTIGYKRTAVSFSSLVFPPAAGCHTSGGVAV 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 S K+ +S + GS I T + D A++G+ +F ++ G LTR G F++ ++G L + +G Sbjct: 63 SEKDMISSQ-GSLIHTASNTDLAIQGEGFFVVKDKTGTHYLTRSGNFQINNEGFLQNTAG 121 >gi|116691038|ref|YP_836661.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia HI2424] gi|170734372|ref|YP_001766319.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia MC0-3] gi|254246967|ref|ZP_04940288.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|116649127|gb|ABK09768.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia HI2424] gi|124871743|gb|EAY63459.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|169817614|gb|ACA92197.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] Length = 262 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 47/276 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++NT T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y G TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GGLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----I 155 RDG F+ G LV++SG Y VL I +PQ + +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVLPA----ITVPQNAQSLTIGKDGVVSVTQPGSSNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 ++ + + G F +SG +PN+ P + +GV + +G++E SN N + Sbjct: 171 GSLQIATFINPTGLEAKGENLFAETTSSG-APNV-SQPGLNGAGV-LNQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|311992329|gb|ADQ26738.1| flagellar distal rod protein [Aeromonas hydrophila] Length = 261 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 111/245 (45%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + +S ++N++N TVG++ + F +++ G D ++ Sbjct: 10 GLDAQ---QTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADTERPSGLM 66 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F + +G+ Sbjct: 67 LGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLNSEGT 126 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQ 167 +V+ YP+ IQIP+ + +GE G++S + K V+ + + Sbjct: 127 IVTPGNGYPL----QPEIQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDFVNAS 182 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G FV ++SG P++ ++G +K+G LE SN N E+ +I Sbjct: 183 GLQPMGENMFVETQSSG-------APVQGVAGTDGLGVIKQGMLETSNVNVTEELVNLIQ 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRVY 240 >gi|188997539|ref|YP_001931790.1| protein of unknown function DUF1078 domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932606|gb|ACD67236.1| protein of unknown function DUF1078 domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 413 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKI 56 M SF + +Q L+ ++DN++N +T+GF++ +V F ++V N+ + Sbjct: 1 MLQSFYTAITGLNGNQQWLNVISDNIANVNTIGFKSERVTFEDLVAHSLTTFANNTPKNT 60 Query: 57 -----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 SFVA + S+ GSF++T + D AL+G+ +F ++ +G + TR G+F++ Sbjct: 61 EIGGGSFVALTTKDFSQ--GSFMNTNSPTDLALDGEGFFMVKDNQGTVYYTRAGQFRLDA 118 Query: 111 DGSLVSASG 119 +G LV+ G Sbjct: 119 NGDLVNVDG 127 >gi|241589579|ref|YP_002979604.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] gi|240868291|gb|ACS65950.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] Length = 401 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 10/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F GL+ A + LS++ N++N +TVG++ V+F +V VGA N I Q +S Sbjct: 3 FQQGLSGLDAASKNLSSIGSNVANVNTVGYKKSTVQFGDVYARSLVGATDNQIGQGVSVT 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G+ TG LD A+ G ++ + +S G + TR+G+F+ +G ++SA Sbjct: 63 RVSQSFTQ---GNVTVTGNPLDIAINGMGFYRMVDSSSGQVSYTRNGQFQTDKNGFVISA 119 Query: 118 SGK 120 +G+ Sbjct: 120 TGQ 122 >gi|308050372|ref|YP_003913938.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] gi|307632562|gb|ADN76864.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] Length = 468 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T ++N++N +T+GF+ + +F++V N + VA+ Sbjct: 2 SFNISLSGLNAAQKDLNTTSNNIANVNTIGFKESRAEFADVYNNSLFTNSKTNVGAGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 + G+ T LD A+ G+ +F S G TR G FK+ D +V + Sbjct: 62 AQIAQQFHQGALSFTNNALDLAINGNGFFVTNSELGGQDFSYTRAGAFKLNDSNFMVDSQ 121 Query: 119 GKY----PVLDMASV---------PIQIPQ 135 G Y PV SV P+QIPQ Sbjct: 122 GNYLMALPVNADGSVQSVSLSTTKPVQIPQ 151 >gi|88858143|ref|ZP_01132785.1| flagellar hook protein [Pseudoalteromonas tunicata D2] gi|88819760|gb|EAR29573.1| flagellar hook protein [Pseudoalteromonas tunicata D2] Length = 492 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 18/149 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L A+N++N +T GF+ + +F++V N Q V + Sbjct: 2 SFNIALSGLKAAQKDLDVTANNIANVNTYGFKESRAEFADVFSTSLFSNAKTQNGEGVLT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWF-ALESP--RGIILTRDGRFKVTDDGSLVSAS 118 GS + T LD A+ G+ +F +SP R TR G FK+ D LV+A Sbjct: 62 QVVAQQFHQGSLLFTSNALDMAINGNGFFVTTDSPLSRDFTYTRSGAFKLDADNRLVTAG 121 Query: 119 GKY----PVLDMASV---------PIQIP 134 G + PV + SV PIQIP Sbjct: 122 GDFLQGLPVNEDGSVKSVSLSTTAPIQIP 150 >gi|291288379|ref|YP_003505195.1| flagellar basal-body rod protein FlgG [Denitrovibrio acetiphilus DSM 12809] gi|290885539|gb|ADD69239.1| flagellar basal-body rod protein FlgG [Denitrovibrio acetiphilus DSM 12809] Length = 262 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 28/159 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY-- 65 G+ AQ + + T+++N++N + +G++ + F ++ I ++ + A+G + Sbjct: 11 GMTAQ---QTNIDTISNNLANVNNIGYKKSRAHFEDL---IYQELKPAGAISAAGMTHPT 64 Query: 66 -----LSKEV---------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 L +V GSF TG LD A+EGD +F P G I TR+G K Sbjct: 65 GIQVGLGSKVAAIEKVHTQGSFQYTGVSLDIAVEGDGYFQFTLPSGEIAYTRNGSLKTDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 DG+LV+++G Y L+ A + +P GE G IS Sbjct: 125 DGNLVNSNGYY--LEPA---VTVPDDVTDIAFGEDGTIS 158 >gi|120613061|ref|YP_972739.1| flagellar basal-body rod protein FlgG [Acidovorax citrulli AAC00-1] gi|326319099|ref|YP_004236771.1| flagellar basal-body rod protein FlgG [Acidovorax avenae subsp. avenae ATCC 19860] gi|120591525|gb|ABM34965.1| flagellar basal-body rod protein FlgG [Acidovorax citrulli AAC00-1] gi|323375935|gb|ADX48204.1| flagellar basal-body rod protein FlgG [Acidovorax avenae subsp. avenae ATCC 19860] Length = 260 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQ------ 54 G++AQ + +L ++ N++N T G++ F ++ VGA + +Q Sbjct: 11 GMSAQ---QTQLDVISHNLANVSTTGYKRNNAVFEDLIYQNLRQVGAQTTEQNQLPTGLH 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + VA+ + + GS + LD A+ G+ +F + P G TRDG F++ Sbjct: 68 LGLGVRTVATSRNFTQ---GSLAQSNNNLDVAINGNGFFQVTMPDGTTGYTRDGSFQLDS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIP----QKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G LV++SG PV + +VP D I + G + + I T+G+ S S Sbjct: 125 QGRLVTSSG-LPVANGITVPANATGISISTDGIVSATVPGTTAPQ--QIGTLGMASFINS 181 Query: 167 QGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G + +E++ TP + G+ +++GFLE SN N + E+ MI + + Sbjct: 182 AGLEPIGQNLFKESAASGQPQQGTPGTNGLGI-IRQGFLETSNVNVVEELVSMIQTQRAY 240 >gi|167626156|ref|YP_001676450.1| flagellar basal-body rod protein FlgF [Shewanella halifaxensis HAW-EB4] gi|167356178|gb|ABZ78791.1| flagellar basal-body rod protein FlgF [Shewanella halifaxensis HAW-EB4] Length = 244 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 20/220 (9%) Query: 23 ADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 A+N++N DT GF+ ++ + VV N + ++ + S++ G+ TG LD Sbjct: 23 ANNLANADTTGFKADLERVNAMVVTPTGNSLQTRV-LAQTQSNGFSQQTGAMNPTGRALD 81 Query: 82 FALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ FA+ + G TR G +G L + G+ PV + PI +P+ E+F Sbjct: 82 LAINDSGLFAVMTAEGEGYTRSGAITPDANGQL-TLDGR-PVAGLDG-PIVLPEYRELF- 137 Query: 142 VGEKGEIS---QKGKVIATMG---LYSVD---MSQGFVRRENSGISPNIPPTPLEDLSGV 192 VG+ G +S +G +I +G L + D MS+G G+ PL V Sbjct: 138 VGDDGRLSIIADEGGIIEEVGQLKLVNPDISAMSKGL-----DGLLYPADRQPLPASEQV 192 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 +V GFLE SN ++ E+ + L+++F L+ EK Sbjct: 193 SVSSGFLEASNVQAVGELIAAMDLSRQFEVQVKLMKSAEK 232 >gi|303248239|ref|ZP_07334502.1| flagellar basal-body rod protein FlgG [Desulfovibrio fructosovorans JJ] gi|302490377|gb|EFL50288.1| flagellar basal-body rod protein FlgG [Desulfovibrio fructosovorans JJ] Length = 260 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 38/242 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR------------TIKVKFSEVVGAI 48 M S +A++ ++ T+++N++N +TVGF+ T++V +E G Sbjct: 1 MMRSLWTATTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTLQVAGTETTGGN 60 Query: 49 KNDIDQKISF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 + ++ + ++ ++ G +TG +LD A++G +F ++ + TR G Sbjct: 61 RIPTGLQVGLGVKPTTVHKFFTQ--GDLQNTGNQLDIAIQGQGFFKVDVNGRELYTRAGS 118 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIAT--MGL 160 FK+ DG++VS SG YP+ SVP + + E G +S G +A + L Sbjct: 119 FKLNQDGTIVS-SGGYPLQPTFSVPTDT----KTITITENGHLSCLDLNGDTLAETDIPL 173 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 Y+ G + + SG + + P D + T+ +G+LE SN + EM Sbjct: 174 YTFINPSGMTAEGRNLYSTTQASGTANEVTP---GDQNAGTLAQGYLEMSNVELVDEMVG 230 Query: 213 MI 214 +I Sbjct: 231 LI 232 >gi|119503645|ref|ZP_01625728.1| hypothetical protein MGP2080_03860 [marine gamma proteobacterium HTCC2080] gi|119460707|gb|EAW41799.1| hypothetical protein MGP2080_03860 [marine gamma proteobacterium HTCC2080] Length = 244 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 99/234 (42%), Gaps = 42/234 (17%) Query: 9 LAAQLA--LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 LAAQ A ++Q + V N++N+ T GF K + + N D S L Sbjct: 7 LAAQSAREIQQAQAVVTHNLANSGTTGF---KADLYQAQSSYLNAAD-GTGTAGSNGSAL 62 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLD 125 G+ TG +LD A+ GD WF + + G + L+R G +V DG L A+GK ++ Sbjct: 63 DYSAGAIAQTGRDLDVAITGDGWFQVVANDGTLALSRRGDLRVGTDGILKDATGKT-IMG 121 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-------------------S 166 A P+ +P + ++G G IS I MG ++ + Sbjct: 122 NAG-PVSLPPYSSL-SIGTDGTIS-----IVPMGELPTNIVALDRLMLVNPPVEQLVKSA 174 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G VR E+ LE + V V G LE SN + + M +MI L + F Sbjct: 175 DGMVRVEDM--------NRLEPDANVRVAVGALETSNVSPVGAMVEMITLARSF 220 >gi|163758015|ref|ZP_02165103.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] gi|162284304|gb|EDQ34587.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] Length = 262 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 109/237 (45%), Gaps = 35/237 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T GF+ + +F++++ + N +Q I + + Sbjct: 13 AQQLNLE----VIANNVANINTTGFKRARAEFADLLYQVERNQGVPNASNQAIVPEGAHI 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GS + T + D AL G WF +E+P G TR G F DG L Sbjct: 69 GLGVQTSAVRNLHIQGSLVGTSNKFDLALVGRGWFQIETPDGETNYTRAGAFNTNADGEL 128 Query: 115 VSASGKYPVLDMASVP-----IQIPQKDEIF-NVGEKGEISQKGKV-----IATMGLYSV 163 V+ G Y V+ P + I + ++F +G + E+ + G++ + GL + Sbjct: 129 VTIDG-YTVVPGIVFPDEASEVVISRTGQVFARIGNEAEMQELGQLTLANFVNEAGLEPL 187 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + RE + P P +D +++G+LE SN + + E+ +I + + Sbjct: 188 GDN---LFRETTASGPANVGVP-DDPGFAHIQQGYLEGSNVDPIKEITDLISAQRAY 240 >gi|126462484|ref|YP_001043598.1| flagellar basal body FlaE domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104148|gb|ABN76826.1| flagellar basal body FlaE domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 423 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 17/135 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S N L+ A + ++ + N++N T+GFR + +F++V + I + + V SG Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISR--TAVGSGV 59 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDG 112 + L + GS ++TG LD A+EG +FA E G I TR G F + +G Sbjct: 60 QTLRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEG 119 Query: 113 SLVSASGK----YPV 123 ++ASG+ +PV Sbjct: 120 VAINASGQKLLAWPV 134 >gi|300936126|ref|ZP_07151065.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] gi|300458704|gb|EFK22197.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] Length = 400 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSMAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDTGTL 127 >gi|170021360|ref|YP_001726314.1| flagellar basal body FlaE domain-containing protein [Escherichia coli ATCC 8739] gi|169756288|gb|ACA78987.1| flagellar basal body FlaE domain protein [Escherichia coli ATCC 8739] Length = 400 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDSGTL 127 >gi|283834455|ref|ZP_06354196.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] gi|291070002|gb|EFE08111.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] Length = 400 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N+ TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANSGTVGYKSMTTQFSAMYAGT-----QAMGVSVAGS 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ D +F + +S I TR G F +G +V+ASG Sbjct: 57 AQSISTGGSMVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFVTDKNGYIVNASGDYL 116 Query: 121 --YPVLDMASV 129 YPV D ++ Sbjct: 117 QGYPVDDSGTL 127 >gi|182412221|ref|YP_001817287.1| flagellar basal-body rod protein FlgG [Opitutus terrae PB90-1] gi|177839435|gb|ACB73687.1| flagellar basal-body rod protein FlgG [Opitutus terrae PB90-1] Length = 261 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 116/255 (45%), Gaps = 42/255 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKI-----S 57 A + L+T+A+N++N +T GF+ K++F +++ N + + S Sbjct: 14 AQQLNLNTIANNLANVNTPGFKRSKIEFQDLLYQKPTRASGTDSGGGNIVPTGLEVGNGS 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ + ++ G STG +LD A++GD +F ++ P G TRDG FK+ G +V+ Sbjct: 74 RVAATSKVFTQ--GQLTSTGEKLDLAIQGDGFFEIQRPDGTFAYTRDGSFKLNAQGQVVT 131 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM------------GLYSVD 164 G PVL IP E + + G+++ G T GL SV Sbjct: 132 IDG-LPVLSGFQA---IPAGTEGVAISDNGQVTLTGANGTTTFRLSVTRFANPSGLRSVG 187 Query: 165 MSQGFVRRENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 G + E + +P I P E G + +G++E SN N + EM +I + Q+ I Sbjct: 188 ---GNLYEETAASGTPEI-GQPGEQGYG-QIMQGYIESSNVNIVEEMVNLI-VAQRAYEI 241 Query: 224 TTLIDENEKSMLEAI 238 + + ML+ + Sbjct: 242 NSKSIQTSDEMLQNV 256 >gi|82702455|ref|YP_412021.1| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC 25196] gi|82410520|gb|ABB74629.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 260 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 44/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + ++ +A+N++N T GF+ + F +++ GA + Q S + Sbjct: 11 GLDAQ---QTQMDVIANNLANVSTNGFKRSRAVFEDLLYQTLRQPGAQSSQQTQLPSGLQ 67 Query: 61 SG-------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 G E++ + G+ TG D A++G +F + P G TRDG F+ +G Sbjct: 68 LGTGVRPVATEHIFTQ-GNLQQTGNSKDVAIQGQGFFQVLRPDGSTAYTRDGSFQTDFEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIAT 157 LV++SG + I IP + VG G +S Q I Sbjct: 127 QLVTSSGYH-----VQPAITIPPNAQSITVGRDGIVSVTTQDSTTPVQVGNLQLATFINP 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL SV + +V +SG +PN+ P D +G+ + +G++E SN N + E+ MI T Sbjct: 182 AGLQSVGENL-YVETASSG-TPNV-TNPGTDGAGL-LNQGYVETSNVNVVEELVNMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + ML+ + + Sbjct: 237 QRAYEINSKSVQTSDQMLQRLTQL 260 >gi|332284019|ref|YP_004415930.1| hypothetical protein PT7_0766 [Pusillimonas sp. T7-7] gi|330427972|gb|AEC19306.1| hypothetical protein PT7_0766 [Pusillimonas sp. T7-7] Length = 412 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 11/136 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A Q L + +N++N+ TVGF+ F++V + + + + VAS + Sbjct: 3 FGQGLSGLNAAAQNLDVIGNNIANSGTVGFKAGTASFADVYASSRVGLGTQ---VASINQ 59 Query: 65 YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGK-- 120 + +GS +TG + D A++G F + P G +L TR+G+F DG LV+A G Sbjct: 60 RFT--IGSVSNTGNQFDMAIDGASGLFRVTDPSGSVLYTRNGQFSPDKDGYLVNAQGHRL 117 Query: 121 --YPVLDMASVPIQIP 134 Y VPI++P Sbjct: 118 TGYEEGGTNLVPIRVP 133 >gi|115353116|ref|YP_774955.1| flagellar basal body rod protein FlgG [Burkholderia ambifaria AMMD] gi|170703098|ref|ZP_02893918.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria IOP40-10] gi|171321840|ref|ZP_02910741.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MEX-5] gi|172061970|ref|YP_001809622.1| flagellar basal body rod protein FlgG [Burkholderia ambifaria MC40-6] gi|115283104|gb|ABI88621.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria AMMD] gi|170131995|gb|EDT00503.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria IOP40-10] gi|171092878|gb|EDT38130.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MEX-5] gi|171994487|gb|ACB65406.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MC40-6] Length = 262 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 119/276 (43%), Gaps = 47/276 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++NT T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y G TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GGLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----I 155 RDG F+ G LV++SG Y +L I +PQ + +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQILPA----ITVPQNAQSLTIGKDGVVSVTQPGSSNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 ++ + + G F +SG +PN+ P + +GV + +G++E SN N + Sbjct: 171 GSLQIATFINPAGLEAKGENLFAETTSSG-APNV-AQPGLNGAGV-LNQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|157692308|ref|YP_001486770.1| flagellar basal body rod protein FlgG [Bacillus pumilus SAFR-032] gi|157681066|gb|ABV62210.1| flagellar basal body rod protein [Bacillus pumilus SAFR-032] Length = 263 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 25/261 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND-- 51 M S G++ + +L VA+N++N +T G++ ++ F ++V G N+ Sbjct: 1 MLRSLYSGISGMKNFQSKLDVVANNVANVNTHGYKKSRITFKDMVSQTIGSSGGPTNNSG 60 Query: 52 -IDQKISFVASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 I+ K + S + K GS +T DF + GD +F +ES ++ TR G F Sbjct: 61 SINSKQIGLGSSLSSIDKIMSAGSSQNTNEPYDFYINGDGFFRIESQGEVLYTRTGNFDT 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVD 164 +GSLV+ G Y +L M I IP +VG G IS + + + L S Sbjct: 121 DSEGSLVTPDGNY-LLGMNGQKITIPDGVSSVSVGPDGTISVVENNVSRTVGQISLVSFR 179 Query: 165 MSQG-------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + G R+ S +P+ P P E +GV ++ G LE SN + E +MI Sbjct: 180 NAGGLDKVGDNLYRQTLSSGAPSNPIVPGEQGTGV-IQTGKLEMSNVDLTDEFTEMIIAQ 238 Query: 218 QKFNSITTLIDENEKSMLEAI 238 + F S I +++ + E + Sbjct: 239 RGFQSNAKTITTSDEILQELV 259 >gi|148558720|ref|YP_001258004.1| flagellar hook protein FlgE [Brucella ovis ATCC 25840] gi|148370005|gb|ABQ62877.1| flagellar hook protein FlgE [Brucella ovis ATCC 25840] Length = 377 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 21/115 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A RLSTVADN++N TVG++ + +FS +V L Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLV--------------------LP 49 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 G + S D A++G+ +F ++ P G LTR G F +G LV+++G Y Sbjct: 50 STAGQYNSGSVLTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAGYY 104 >gi|332558508|ref|ZP_08412830.1| FlgE [Rhodobacter sphaeroides WS8N] gi|12057218|gb|AAF14370.2|AF133240_4 flagellar hook protein FlgE [Rhodobacter sphaeroides] gi|332276220|gb|EGJ21535.1| FlgE [Rhodobacter sphaeroides WS8N] Length = 423 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 17/135 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S N L+ A + ++ + N++N T+GFR + +F++V + I + + V SG Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISR--TAVGSGV 59 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDG 112 + L + GS ++TG LD A+EG +FA E G I TR G F + +G Sbjct: 60 QTLRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEG 119 Query: 113 SLVSASGK----YPV 123 ++ASG+ +PV Sbjct: 120 VAINASGQKLLAWPV 134 >gi|332140546|ref|YP_004426284.1| flagellar hook protein FlgE [Alteromonas macleodii str. 'Deep ecotype'] gi|327550568|gb|AEA97286.1| flagellar hook protein FlgE [Alteromonas macleodii str. 'Deep ecotype'] Length = 461 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 27/138 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L A+N++N +TVGF+ + +F +V A S +A GK Sbjct: 2 SFNIALSGVSAAQKDLDVTANNIANVNTVGFKESRAEFGDVYAA---------SLLAGGK 52 Query: 64 E-----YLSKEV------GSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVT 109 L++EV GS T T LD A+ G+ +FA + R TR G+FK+ Sbjct: 53 TKVGDGVLTQEVAQQFSQGSLQFTNTSLDLAITGNGFFATVPEITSRDFSFTRAGQFKLD 112 Query: 110 DDGSLVSASGK----YPV 123 D +V+++G +PV Sbjct: 113 SDNFVVNSNGDNLLGFPV 130 >gi|89069818|ref|ZP_01157153.1| flagellar basal-body rod protein FlgG [Oceanicola granulosus HTCC2516] gi|89044619|gb|EAR50735.1| flagellar basal-body rod protein FlgG [Oceanicola granulosus HTCC2516] Length = 261 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI--SF 58 G++AQ + R+ +++N++N +T G+ + +F+++ G I N D + + Sbjct: 10 GMSAQ---QMRVEVISNNLANMNTTGYNARRAEFADLHYQQMMRPGTI-NASDGTVLPTG 65 Query: 59 VASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 V G V GS STG +LD A+EG + + P G TRDG K + D Sbjct: 66 VQLGLGVRPTSVSMMLAQGSLSSTGGDLDIAIEGSGYLEVALPDGRPGYTRDGGLKRSGD 125 Query: 112 GSLVSASGKYPVLDMASVP-----IQIPQKDEIFNV-GEKGEISQKGKV-IATM----GL 160 G +V+A G +PV ++P I I + E++ ++ E G+ IA GL Sbjct: 126 GLIVTADG-FPVAPEITIPRDALSISINPEGEVYAYFSDRVEAQLLGQFDIAGFSNPRGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +V S FV E SG P TP +D G T+++GFLEDS+ +++ E+ +I + + Sbjct: 185 EAVG-SNLFVETEASG--PANVTTPGQDGLG-TLRQGFLEDSSVDAVKEVTDLIEAQRGY 240 >gi|295697723|ref|YP_003590961.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295413325|gb|ADG07817.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 265 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 32/224 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------V 59 G + A ++ +A++ +N +T G+++ + FS+++ A+ +I V Sbjct: 7 GASGMSAASHWVNAMANDAANMNTTGYKSEDLAFSDLL-AVHYAPGVRIPAPDTPPGLPV 65 Query: 60 ASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD---- 111 SG ++ G TG +LD A EG+ +F + P G+ TRDG F+V+ D Sbjct: 66 GSGVRAAARVSDWSQGPLQETGRKLDVAWEGEGFFVVSGPEGMRYTRDGSFQVSVDPAGQ 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEISQKGKV------IATMGLYSVD 164 +LV+A G VLD PI + D +G G I+ G V IA +G D Sbjct: 126 ATLVTADGHV-VLDEYGAPIDLTGVDLSTLAIGPDGRIT--GSVAGTPTDIAVLGRVVFD 182 Query: 165 MSQGFVRRENS--GISPNIPPTP---LEDLSGVTVKRGFLEDSN 203 Q ++ N+ +P TP + L +++G+LE SN Sbjct: 183 HPQRLIKAGNNLYDAGTEVPLTPADIADPLRFGRLRQGYLEASN 226 >gi|257095357|ref|YP_003168998.1| flagellar basal-body rod protein FlgG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047881|gb|ACV37069.1| flagellar basal-body rod protein FlgG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 260 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ------ 54 GL AQ + ++ +A+N++N T GF+ + F++++ GA + Q Sbjct: 11 GLTAQ---QVQIDIIANNLANVSTNGFKQARGIFADLLYQTLRQPGAQSSQTTQIPDGLQ 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 ++ V++G+ + GS TG LD A++G +F + P G TRDG F+ + Sbjct: 68 IGLGVTPVSTGRIFTQ---GSLQQTGNALDMAIDGAGFFQVLLPDGTTAYTRDGSFQKDN 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATM- 158 G +V+A+G YP+ I IP + V G +S Q G + +AT Sbjct: 125 QGQIVTANG-YPLQPA----ITIPAQALTVTVATDGVVSITLPTTTAPVQIGTIQVATFV 179 Query: 159 ---GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL SV + ++ +SG + P TP + SGV V+ ++E SN N E+ MI Sbjct: 180 NNGGLQSVGENL-YLETASSGTA--TPNTPGTNGSGVVVQN-YVEASNVNVAQELVLMIQ 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|212637787|ref|YP_002314312.1| flagellar basal body rod protein [Shewanella piezotolerans WP3] gi|212559271|gb|ACJ31725.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 261 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 115/246 (46%), Gaps = 32/246 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ + +N Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + + +++V G ++T +LD A+EG +F +E G + +RDG+F Sbjct: 61 ELPSGLQLGTGTRVVGTQKVFTSGDMLTTNQQLDLAIEGQGFFQIEESNGDLSFSRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK------GKVIATMG 159 +G +V++ G P+ VP I+IP++ + G +S + + + + Sbjct: 121 YRNSEGLMVTSQG-LPL-----VPNIEIPEEALTITIATDGIVSAQMAGQADAQELGQIT 174 Query: 160 LYSVDMSQGFVRREN-----SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 L + G R N +G S D + +++G LE +N N + EM +MI Sbjct: 175 LVNFTNPAGLEARGNNLYRETGASGAAIEGVAGDQALGQIRQGALEGANVNVVEEMVEMI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 STQRAY 240 >gi|77463652|ref|YP_353156.1| flagellar hook protein FlgE [Rhodobacter sphaeroides 2.4.1] gi|77388070|gb|ABA79255.1| flagellar hook protein FlgE [Rhodobacter sphaeroides 2.4.1] Length = 423 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 17/135 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S N L+ A + ++ + N++N T+GFR + +F++V + I + + V SG Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISR--TAVGSGV 59 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDG 112 + L + GS ++TG LD A+EG +FA E G I TR G F + +G Sbjct: 60 QTLRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEG 119 Query: 113 SLVSASGK----YPV 123 ++ASG+ +PV Sbjct: 120 VAINASGQKLLAWPV 134 >gi|315586347|gb|ADU40728.1| flagellar basal-body rod protein [Helicobacter pylori 35A] Length = 269 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEKTHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + ++ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGIHQISDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 +EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 HEMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|221639495|ref|YP_002525757.1| Flagellar hook protein FlgE [Rhodobacter sphaeroides KD131] gi|221160276|gb|ACM01256.1| Flagellar hook protein FlgE [Rhodobacter sphaeroides KD131] Length = 423 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 17/135 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S N L+ A + ++ + N++N T+GFR + +F++V + I + + V SG Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISR--TAVGSGV 59 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDG 112 + L + GS ++TG LD A+EG +FA E G I TR G F + +G Sbjct: 60 QTLRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEG 119 Query: 113 SLVSASGK----YPV 123 ++ASG+ +PV Sbjct: 120 VAINASGQKLLAWPV 134 >gi|325529016|gb|EGD06029.1| flagellar basal body rod protein FlgG [Burkholderia sp. TJI49] Length = 262 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 115/275 (41%), Gaps = 45/275 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAGFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y GS TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GSLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----I 155 RDG F+ G LV++SG Y +L I +PQ +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQILPA----ITVPQNATSLTIGKDGVVSVTQPGSSNAVQI 170 Query: 156 ATMGLYSVDMSQGF-VRREN------SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 ++ + + G R EN S +PN+ L T+ +G++E SN N + Sbjct: 171 GSLQIATFINPAGLEARGENLFSETTSSGAPNVSQPGLNGAG--TLNQGYVEASNVNVVQ 228 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 229 ELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|330501137|ref|YP_004378006.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina NK-01] gi|328915423|gb|AEB56254.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina NK-01] Length = 395 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI + A+ ++L+T++ N++N T GF++ + +F G+I D V + Sbjct: 2 SFNIAMTGLSAVNEQLNTISHNIANAGTTGFKSSRTEF----GSIYADSQAMGVEVLATT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK-- 120 + +S+ GS ++TG LD A+ G +F G + TR G F D ++V+A+G+ Sbjct: 58 QSISQG-GSLVTTGRSLDLAISGGGFFVTRGGNGDVSYTRAGVFGADKDNNIVNAAGQTL 116 Query: 121 --YPV 123 YPV Sbjct: 117 QGYPV 121 >gi|88811802|ref|ZP_01127056.1| hypothetical protein NB231_05335 [Nitrococcus mobilis Nb-231] gi|88791193|gb|EAR22306.1| hypothetical protein NB231_05335 [Nitrococcus mobilis Nb-231] Length = 246 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 25 NMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EVGS 72 N++N +T GFR D+D +S +G Y S+ G Sbjct: 25 NLANANTPGFRA--------------DLDALLSRPVAGPGYPSRVYSVETALGSSFAPGH 70 Query: 73 FISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPI 131 I+TG LD AL G W A+++ G TR G ++T G L + +G+ VL P+ Sbjct: 71 LITTGRSLDVALNGAGWLAVQARDGTEAYTRRGDLRITAGGLLQTGAGQL-VLGNGG-PV 128 Query: 132 QIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPPTP 185 IP ++ ++G+ G I+ Q A + L V+ +R+ G+ T Sbjct: 129 AIPPAKQV-SIGQDGTITVIPIGQPDNAPAVVDRLRLVNPPSAALRKGEDGLFRLEGGTA 187 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI------DENEKSMLEA 237 +GV+V G LE SN N++ + MI ++F + L+ DE + +L A Sbjct: 188 ATADAGVSVVSGALESSNVNTVDALVNMIGNARRFEAYVKLMESAKSNDETGQRLLRA 245 >gi|293605004|ref|ZP_06687400.1| flagellar basal-body rod protein FlgF [Achromobacter piechaudii ATCC 43553] gi|292816609|gb|EFF75694.1| flagellar basal-body rod protein FlgF [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 9/130 (6%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLS 67 AA++ +Q + +++NM+N +T GFR + V + ++S VAS G + Sbjct: 12 AARITEQQ--AAISNNMANVNTTGFREQIALYRSVPVTDGVSLPTRVSTVASTPGNSF-- 67 Query: 68 KEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 E+G+ +TG +LD AL + W A+++P+G TR G +V +G L ++ G+ PVL Sbjct: 68 -EMGNMQTTGRDLDVALSSERGWIAVQTPQGEAYTRGGSLQVGINGLLQTSLGQ-PVLSD 125 Query: 127 ASVPIQIPQK 136 PI +P + Sbjct: 126 QGGPIDVPDQ 135 >gi|251789169|ref|YP_003003890.1| flagellar basal body rod protein [Dickeya zeae Ech1591] gi|247537790|gb|ACT06411.1| flagellar basal body rod protein [Dickeya zeae Ech1591] Length = 251 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 23/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA LEQ+ T + NM+N T GFR V I+ ++ + V S + Sbjct: 11 AASQTLEQQAVT-SHNMANASTPGFRAQLAAMRAV--PIQGVTNETRTLVISSTPGVDTT 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 GS TG +D AL D W A+ + G TR+G ++ +G L + G+ + D Sbjct: 68 PGSMDYTGRSMDVALSQDGWLAVRAADGSEAYTRNGNMEINSNGQL-AVQGRLVMGDGG- 125 Query: 129 VPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMG-LYSVDMSQGFVRRENSG---ISP 179 PI++P + ++ +G G I S + +G L V + V R + G +SP Sbjct: 126 -PIEVPPQTQL-TIGPDGTINALNPSDAANTVTQIGRLKLVKATANEVTRGDDGFFRVSP 183 Query: 180 NIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 L++ + V V G LE SN N++ M +MI +++F + + +D+N + Sbjct: 184 AAQQQRGAVLQNDATVRVMPGVLEGSNVNTVESMVEMISNSRRFEMQMKVISNVDDNTQ 242 >gi|110677663|ref|YP_680670.1| flagellar basal body rod protein FlgG [Roseobacter denitrificans OCh 114] gi|109453779|gb|ABG29984.1| flagellar basal-body rod protein FlgG [Roseobacter denitrificans OCh 114] Length = 261 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 46/259 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVA 60 G++AQ + R+ T+++N+SN T G+ + +F+++ G + N D + + Sbjct: 10 GMSAQ---QMRVETISNNLSNMSTTGYNARRAEFADLHYQQMSRPGTV-NATDGTV--LP 63 Query: 61 SGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 +G + + + GS +TG +LD A+EG + + P G TRDG K Sbjct: 64 TGVQLGLGVRPSAVSVQLQQGSLSATGGDLDLAIEGTGFLEVTLPSGQTAYTRDGGLKRD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 +G +V++ G YPV I IP ++ GE+ + +++ L Sbjct: 124 AEGLIVTSDG-YPV----EPEIVIPDDARSISINTSGEVFAYFSDATDAELLGQFNLAGF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 ++G F E SG + I TP ED G TV++G+LE S+ +++ E+ ++I Sbjct: 179 TNAKGLEALGGNLFAETEASGAA--IVSTPGEDGLG-TVRQGYLESSSVDAVREITELIE 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + +I ++ M Sbjct: 236 AQRGYEMNAKVISAADQMM 254 >gi|170755952|ref|YP_001782255.1| flagellar basal body rod protein FlgG [Clostridium botulinum B1 str. Okra] gi|169121164|gb|ACA45000.1| flagellar basal body rod protein [Clostridium botulinum B1 str. Okra] Length = 255 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 33/252 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S ++ ++LE + T++ N+SN TVG+++ + F + + + D+K Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTDLAFKKFEDVLMENYDKKLGNKN 60 Query: 56 ISFVASGKEYLSK--EVGSFIS------TGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I + G +K EV + + TG DFALEG +F +E+ TRDG F Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK-------GEISQKGKVIATMGL 160 V G LV+ SG Y V+ + ++ IF VG K G IS G + + Sbjct: 121 VDTRGYLVNDSG-YNVM---GINRNTGAREAIF-VGSKTIGTDASGNISLNGVPSYSFQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + ++ N P ++++G+ V++ LE SN N EM M+ + F Sbjct: 176 ADFNDYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSF 230 Query: 221 NS---ITTLIDE 229 + I IDE Sbjct: 231 ETNQKIVQSIDE 242 >gi|148546706|ref|YP_001266808.1| flagellar basal body FlaE domain-containing protein [Pseudomonas putida F1] gi|148510764|gb|ABQ77624.1| flagellar basal body FlaE domain protein [Pseudomonas putida F1] Length = 584 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 9/114 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKIS 57 SFNIGL+ A ++L +N++N +T GF+ + +F++V +G KN + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKASRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 A +++ +V +TG LD ++G +F L + TR G F+ + D Sbjct: 62 LAAISQQFTQGDVN---TTGNALDMGIQGQGFFVLSDNGSKVYTRAGSFQPSKD 112 >gi|124268253|ref|YP_001022257.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] gi|124261028|gb|ABM96022.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] Length = 242 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 17/225 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR T+A+N++N T GFR F V ++ D + G Sbjct: 14 ATMQRQETLANNLANASTTGFRAELQAFRAV--PVRGDGASTRVYSLETTTGYDPTPGPM 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 +TG LD A++G+AW A++ G TR G +V +G+L ++ G + D PI Sbjct: 72 AATGRALDVAMQGNAWLAVQGLDGTEAYTRMGSLQVDAEGTLKTSGGLTVLGDGG--PIA 129 Query: 133 IPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVDMSQGFVRRENSGI----SPNIPPTPL 186 +P + G +S Q + ++G + + ++R + G+ ++P P Sbjct: 130 LPANSSP-QIAADGTVSVKQANGGVTSVGRLKLVTPEAALQRGDDGLFRAADGDLPVDP- 187 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 V G LE SN N + M MI ++F S ++ E Sbjct: 188 ----NARVAEGTLEGSNVNPIENMVAMIAAARQFESQMKMLQTAE 228 >gi|320354341|ref|YP_004195680.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122843|gb|ADW18389.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 244 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 12/220 (5%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-ISFVASGKEYLS 67 L+ +A EQ +S VA N++N T GF+ ++ F+ ++ + D + I+F K + Sbjct: 9 LSGAVAREQAMSNVAANLANVSTTGFKKDRISFAAILRGAQQASDARGINFARIRKIGVD 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G T LD A++G +F + TR GR + D+G + + G VL Sbjct: 69 FSQGGMQPTDRPLDVAIDGPGFFKVRKGGETFYTRSGRLMLDDNGMVKTEDG-LNVLGAG 127 Query: 128 SVPIQIPQ---KDEIFNVGEKGEISQKGKVIAT-MGLYSVDMSQGFVRRENSGIS-PNIP 182 + P+QI KD + + E G+IS G + + +++V + N+ + Sbjct: 128 NEPLQIDTALGKDIV--IAESGDISVAGTLTGNRIQVFAVPDQDKLKKAGNALYALEEGG 185 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 PL D V +G LE SN N + EM M+ + F + Sbjct: 186 DQPLADYR---VLQGSLETSNVNMIEEMTAMVDTQRTFEA 222 >gi|308063216|gb|ADO05103.1| flagellar basal-body rod protein [Helicobacter pylori Sat464] Length = 269 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A +A RL ++N++N +T GF+ + F + + + + Sbjct: 1 MQNGYYAATGAMVAQFNRLDLTSNNLANLNTNGFKRDDAVTGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSM 207 G + L S + + I N+ E + + ++++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISDSGSLRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|85706167|ref|ZP_01037262.1| flagellar basal-body rod protein FlgG [Roseovarius sp. 217] gi|85669331|gb|EAQ24197.1| flagellar basal-body rod protein FlgG [Roseovarius sp. 217] Length = 261 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI--SF 58 G+AAQ + R+ T+++N++N T G+ + +F+++ G I N D + + Sbjct: 10 GMAAQ---QMRVETISNNLANMSTTGYNARRAEFADLHYQQLARAGTI-NATDGTVLPTG 65 Query: 59 VASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 V G + GS T +LD A+EG+ + + P G TRDG K + D Sbjct: 66 VQLGLGVRPAAISVQLAQGSLSQTNGDLDVAIEGNGYLEVTLPSGQAAYTRDGALKRSAD 125 Query: 112 GSLVSASGKYPVLDMASVP-----IQIPQKDEIFN-VGEKGEISQKGKV-IATM----GL 160 G +V++ G +PV ++P I I + E+F + E Q G++ +A GL Sbjct: 126 GIIVNSEG-FPVAPEITIPEDARSITINAEGEVFAFFQDNAEAQQLGQLDLAGFSNPKGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ S FV E SG P T +D G T+++G+LEDS+ + + E+ ++I + + Sbjct: 185 EAIG-SNLFVETEASG--PANVTTAGQDGLG-TLRQGYLEDSSVDPVREITELIEAQRGY 240 >gi|78067835|ref|YP_370604.1| flagellar basal body rod protein FlgG [Burkholderia sp. 383] gi|77968580|gb|ABB09960.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 262 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 114/275 (41%), Gaps = 45/275 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++NT T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y G TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GGLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKV----I 155 RDG F+ G LV++SG Y VL I IPQ +G+ G ++Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVLP----AITIPQNATSLTIGKDGVVTVTQAGSTNSVQI 170 Query: 156 ATMGLYSVDMSQGF-VRREN------SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 ++ + + G R EN S +PN+ L T+ + ++E SN N + Sbjct: 171 GSLQVATFINPAGLEARGENLFSETTSSGAPNVSQPGLNGAG--TLSQNYVESSNVNVVQ 228 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 229 ELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|262273528|ref|ZP_06051342.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] gi|262222506|gb|EEY73817.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] Length = 243 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 +A+N++N +T GFR + ++ V I+ + + G + G+ T LD Sbjct: 22 LANNLANVNTDGFRA-DIGLAKSV-EIQGKGLETRTLTGIGSTWSDFTPGALKRTDNPLD 79 Query: 82 FALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF 140 A+ G+ +FA++ G TR G F + ++G L+ G PVL PI IP+ +++ Sbjct: 80 VAIRGNGFFAVQVGEDGEAYTRAGAFHLNENGDLML--GDRPVLGDGG-PIAIPEHEKLM 136 Query: 141 NVGEKGEIS---QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 +G+ G IS + +G L V +R+ G+ P++ GVTV Sbjct: 137 -IGQDGTISVVTAGSAAVQEVGKLKLVKPEPNQLRKGEDGLFRTYNGEPVDADQGVTVAV 195 Query: 197 GFLEDSNANSMYEMGQMIHLTQKF 220 G+LE SN N++ + + I L++ F Sbjct: 196 GYLESSNVNAIDALVKNIDLSRNF 219 >gi|225181584|ref|ZP_03735025.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] gi|225167692|gb|EEG76502.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] Length = 259 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 30/224 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGS- 72 A +Q++ A N++N +T G++ FS++V + A+G+ + VGS Sbjct: 15 AQQQKIDVTAHNIANVNTTGYKKKTTLFSDLVYQSIERRGNAVEPAAAGEHPKTVGVGSK 74 Query: 73 ------------FISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 ++ T +LD A+ GD +F + P G+ TRDG F +G++V++ G Sbjct: 75 VAAIRSDLRPGTYLQTDRDLDMAIVGDGYFQITLPGGGMAYTRDGSFSRDSEGNIVNSQG 134 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRREN 174 V Q+P+ NV +G +S + G V+ + L D G + + Sbjct: 135 YRVVFP------QLPEGQYEVNVAPEGAVSAVYEDGTVVPLGMLQLAYFDNPHGLEQLGD 188 Query: 175 SGISPNIPPTPLEDLS----GVTVKRGFLEDSNANSMYEMGQMI 214 + + P + L+ G V +G+LE SN + EM Q+I Sbjct: 189 NLLQAT-PASGAALLAFPGEGSRVSQGYLESSNVDLAAEMTQLI 231 >gi|91794993|ref|YP_564644.1| flagellar basal-body rod FlgG [Shewanella denitrificans OS217] gi|91716995|gb|ABE56921.1| Flagellar basal-body rod FlgG [Shewanella denitrificans OS217] Length = 261 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 76/137 (55%), Gaps = 18/137 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GLAAQ + +++T+A+N++N +T GF+ +V F+++ G ++++Q S Sbjct: 11 GLAAQ---DTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDELNQLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + G +T +LD A+EG+ +F +E P G + TRDG+F + +G Sbjct: 68 LGTGTRVAGTQKVFTTGDVHNTSQQLDLAIEGNGFFQVEEPNGDLAYTRDGQFYRSSEGM 127 Query: 114 LVSASGKYPVLDMASVP 130 +V++ G P++ +P Sbjct: 128 MVTSQG-LPLVPNIVIP 143 >gi|83816512|ref|YP_446741.1| flagellar basal-body rod protein FlgG [Salinibacter ruber DSM 13855] gi|294508677|ref|YP_003572736.1| flagellar basal-body rod protein FlgG [Salinibacter ruber M8] gi|83757906|gb|ABC46019.1| flagellar basal-body rod protein FlgG [Salinibacter ruber DSM 13855] gi|294345006|emb|CBH25784.1| flagellar basal-body rod protein FlgG [Salinibacter ruber M8] Length = 262 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 53/269 (19%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------------GAIKND-- 51 +G+ AQ + + +A+N+SN +T G++ +V F +++ GA + Sbjct: 11 LGMQAQ---QTSIDNIANNLSNANTTGYKRSRVVFQDLLYENVQASAEGQTDGAEPAELQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 I + VA+ + + GSF TG LD A+ GD +F ++ P G + TRDG F ++ Sbjct: 68 IGSGTTAVATVRNF---SQGSFSKTGNSLDLAINGDGFFQVQQPDGSLAYTRDGTFTLSS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS--VDMSQG 168 +G++V+ +G V +VP P EI I Q+G V A + S V++ Q Sbjct: 125 EGNIVTQTG-LKVQPNINVP---PNAVEI-------SIDQEGTVKARLQGESEMVELGQM 173 Query: 169 FVRR--ENSGISPN--------------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + R ++G+ P TP G V++GFLE N + EM Sbjct: 174 ELARFPNSAGLRPQGGNLYEQTESSGEPFIGTPGRGGLG-NVRQGFLEKGNVKVVQEMTS 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + + ++ +++ M++ N+ Sbjct: 233 LIQAQRTYELNSRMVTTSDE-MMQTANNV 260 >gi|301166803|emb|CBW26380.1| putative flagellar hook protein [Bacteriovorax marinus SJ] Length = 414 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 8/126 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISF 58 + NI L ++L V DN++N T GF+ + +FSE++ GA D + Sbjct: 6 NLNITANTSKQLGRKLEMVGDNINNAGTNGFKGSRAEFSEMLNTASMGADGGDQVGAGAI 65 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + + K LS+ G+ + + D A++G FA+ +P G TRDG F+ DG LV++ Sbjct: 66 IDASKRDLSQ--GTLAHSNSATDLAIDGTGLFAVNTPFGQAYTRDGSFRFDKDGYLVTSD 123 Query: 119 GKYPVL 124 G + VL Sbjct: 124 G-HKVL 128 >gi|134095097|ref|YP_001100172.1| flagellar hook protein FlgE [Herminiimonas arsenicoxydans] gi|133739000|emb|CAL62048.1| Flagellar hook protein FlgE [Herminiimonas arsenicoxydans] Length = 418 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 SF GL+ A + L + +N++N+ TVGF+ +V+F+++ GA + I +I Sbjct: 2 SFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAAQIGIGTQI 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + VA + S+ G+ ++ LD A+ GD +F + S I R+G+F+++ +G + S Sbjct: 62 ARVA---QLFSQ--GNITASNNPLDMAINGDGFFRMSSGGTISYARNGQFELSKEGFIQS 116 Query: 117 ASG 119 ASG Sbjct: 117 ASG 119 >gi|330830301|ref|YP_004393253.1| flagellar basal body rod protein FlgG [Aeromonas veronii B565] gi|328805437|gb|AEB50636.1| Flagellar basal body rod protein FlgG [Aeromonas veronii B565] Length = 262 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + +S ++N++N TVGF+ + F +++ N + S Sbjct: 11 GLDAQ---QTNISVTSNNLANASTVGFKKSRAIFEDLLYQNINQPGGRSSADTELPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F + D+G+ Sbjct: 68 LGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLNDEGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V+ YP+ IQIP+ + VGE G++S Sbjct: 128 IVTPGNGYPL----QPEIQIPENAQSVTVGEDGQVS 159 >gi|149912834|ref|ZP_01901368.1| flagellar basal-body rod protein FlgG [Roseobacter sp. AzwK-3b] gi|149813240|gb|EDM73066.1| flagellar basal-body rod protein FlgG [Roseobacter sp. AzwK-3b] Length = 261 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 115/247 (46%), Gaps = 39/247 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + I A + R+ T+++N++N T G+ T + +FS++ + + + AS Sbjct: 3 ALKIAATGMTAQQLRVETISNNLANMSTTGYNTRRAEFSDL---HYQQMARPGTVNASDG 59 Query: 64 EYLSKEV-----------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 L V GS +T +LD A++G+ + + P G TRDG Sbjct: 60 TVLPTGVQLGLGVRPAAVSIHLAQGSLSATNGDLDLAIDGNGYLEVTLPSGQSAYTRDGA 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNV-GEKGEISQKGKVIATMG 159 K + DG +V++ G + ++ ++P I I E+F E E Q G++ T+ Sbjct: 120 LKRSADGLIVTSDG-FSLVPEITIPADVRSISINAAGEVFAYFAETTEAQQIGEI--TLA 176 Query: 160 LYS------VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 +S + F+ E SG P++ TP +D G T+++G+LEDS+ + + E+ ++ Sbjct: 177 GFSNPKGLEAAGNNLFLETEASG--PSLVSTPGQDGLG-TLRQGYLEDSSVDPVREVTEL 233 Query: 214 IHLTQKF 220 I + + Sbjct: 234 IEAQRGY 240 >gi|296274032|ref|YP_003656663.1| flagellar basal-body rod protein FlgG [Arcobacter nitrofigilis DSM 7299] gi|296098206|gb|ADG94156.1| flagellar basal-body rod protein FlgG [Arcobacter nitrofigilis DSM 7299] Length = 263 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 34/246 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF-VASGKE 64 A + ++ ++N+SN +T GF+ + +F +++ G+ D V SG Sbjct: 14 AQQHQIDVTSNNISNVNTAGFKKDRAEFEDLMYQRLNYTGGSTSQDTRNPTGIDVGSGVR 73 Query: 65 ----YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S E G TG +LD A+EG +F + P G TR+G+FKV DGS+V+ +G Sbjct: 74 ISGIQKSFEEGDLEPTGNDLDIAIEGKGFFRVTLPNGETAYTRNGQFKVNSDGSIVNGNG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYS-------VDMS 166 +LD I IP N+ G I +Q+ + + + L M Sbjct: 134 Y--LLDPE---IVIPDNLTKINISNDGLITATDPTTQEEQEVGQITLSDFVNPAGLAPMG 188 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + R + P I P E+ G +++GF+E SN + EM +I + + + + Sbjct: 189 ESLFRATTASGDP-IDANPTEEQFG-NLRQGFVEMSNVKLVSEMVDLITAQRAYEANSKA 246 Query: 227 IDENEK 232 I +K Sbjct: 247 IQTADK 252 >gi|295097201|emb|CBK86291.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 260 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 35/239 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +++N++N +T GF+ + F +++ GA ++ S + Sbjct: 11 GLEAQ---QTNMDVISNNLANVNTNGFKRQRAVFQDLLYQTMRQPGAQASEQTTLPSGLQ 67 Query: 61 SG---KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G + ++ V G TG + D A+EG +F ++ P G TRDG F ++G Sbjct: 68 LGTGVRPVSTQRVHTQGGLNMTGNDTDVAIEGKGFFQVQLPDGSTAYTRDGHFDKNENGQ 127 Query: 114 LVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEI--SQKGKV-IATM----GLY 161 LV+A G +P+L VP +QI D I +V G+ Q G++ +AT GL Sbjct: 128 LVNAEG-HPILPGVVVPQDAKEMQI-SPDGIVSVTLPGQAQPQQVGQLTLATFVNDAGLE 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + R S +PN LED T+K+ ++E SN N E+ MI + + + Sbjct: 186 SIGGN--LYRETQSSGAPNELNPGLEDAG--TLKQKYIETSNVNVAEELVNMIQVQRAY 240 >gi|49089306|gb|AAT51668.1| PA1081 [synthetic construct] Length = 250 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 47/236 (19%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK- 68 A+Q L R A+N++N T GFR D +Q S SG + ++ Sbjct: 12 ASQNTLAMRAH--ANNLANISTSGFR--------------RDFEQARSMQVSGDSFPARV 55 Query: 69 -----------EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 GS TG ELD A++GD + A+++P G R + G L + Sbjct: 56 FAMSERPGTDFSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRT 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQG 168 G PVL PI +P ++++ +G+ G IS + V+ + L + ++ Q Sbjct: 116 GDG-LPVLGNGG-PIAVPPEEKV-EIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQ- 171 Query: 169 FVRRENSGISPNIP----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + G+ P PL D + V V GFLE SN N++ EM ++ L+++F Sbjct: 172 -MEKGTDGLLHYKPQPGEQAPLAD-ANVKVVSGFLESSNVNAVEEMTAILSLSRQF 225 >gi|296134367|ref|YP_003641614.1| fagellar hook-basal body protein [Thermincola sp. JR] gi|296032945|gb|ADG83713.1| fagellar hook-basal body protein [Thermincola potens JR] Length = 362 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 39/171 (22%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L QLA++ ++A+N++N +T G++ +V+F +++ + A GK+ L Sbjct: 13 LGQQLAMD----SIANNLANVNTTGYKKSRVEFQDLLYS---------EMRAPGKKTLRG 59 Query: 69 EV----------------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 E+ G T LD A+EG+A+FA+ P G + TRDG Sbjct: 60 EIIPTGFQTGNGVRPAGTPVIFGQGIIQQTDNPLDLAIEGNAFFAVRRPDGSLAYTRDGS 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQI--PQKDEIFNVGEKGEISQKGKV 154 FK+ G+LV+A G VLD P+ PQ +I N G E G++ Sbjct: 120 FKLDAKGTLVTADGS-KVLDENLNPLTFDSPQSLKIDNAGAILEQQAVGRI 169 >gi|226939372|ref|YP_002794445.1| flgG [Laribacter hongkongensis HLHK9] gi|226714298|gb|ACO73436.1| flgG [Laribacter hongkongensis HLHK9] Length = 260 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 36/231 (15%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV-------GA--IKNDIDQKISFVASGKEYLSK 68 RL + +N++N +T GF+ + F +++ GA +N + V +G ++ Sbjct: 18 RLDVITNNLANVNTTGFKKGRAVFEDLMYQTIRQPGAQSSQNTMLPTGLLVGTGAAPVAV 77 Query: 69 E----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 + G+ T LD A+ G +F ++ P G I TRDG FK+ D G LV++ G Sbjct: 78 DRQFSPGNLQQTNNALDMAINGRGFFTIQMPDGTIGYTRDGTFKLDDQGQLVTSQGF--- 134 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQG--------F 169 + I +PQ + +V + G +S + + I M L QG + Sbjct: 135 --LVDPQITVPQGAKSISVSKDGIVSVVLPGQTQPQQIGQMQLADFINPQGLEPIGGNLY 192 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + SG +P + P D +G +++ FLE SN N E+ +MI + + Sbjct: 193 LETAASG-APTV-ANPTNDGTGA-IQQTFLEASNVNVTEELVEMIQAQRAY 240 >gi|294679031|ref|YP_003579646.1| flagellar basal-body rod protein FlgG [Rhodobacter capsulatus SB 1003] gi|294477851|gb|ADE87239.1| flagellar basal-body rod protein FlgG [Rhodobacter capsulatus SB 1003] Length = 261 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 49/267 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAI-KNDIDQKISFV 59 G++AQ + R+ +++N++N T G+ + +F++++ G I ND + V Sbjct: 10 GMSAQ---QMRVEVISNNLANMSTTGYNARRAEFADLMYQQATRPGTITANDGTIVPAGV 66 Query: 60 ASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G S V G STG +LD A++G + + P G TRDG K + DG Sbjct: 67 QIGLGVRSTAVSITLAQGPLASTGGDLDLAIDGYGFLEVTLPSGASAYTRDGGLKRSADG 126 Query: 113 SLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDM 165 +V++ G YPV VP I +P ++ GE+ + +++ + L Sbjct: 127 QIVTSDG-YPV-----VPGITLPDDATTISINAAGEVYAYFTNQVQPQLLGQITLAGFTN 180 Query: 166 SQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 +G F+ E SG +P + P D GV +K+G+LE+S+ +++ E+ ++I Sbjct: 181 EKGLEAIGSNLFLETEASG-APTV-AAPGTDGLGV-IKQGYLEESSVDAVREITELIKAQ 237 Query: 218 QKFN---SITTLIDENEKSMLEAIRNI 241 + + + T DE ML+A + Sbjct: 238 RGYEMNAKVITAADE----MLQATTQV 260 >gi|188579867|ref|YP_001923312.1| flagellar basal body rod protein FlgG [Methylobacterium populi BJ001] gi|179343365|gb|ACB78777.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] Length = 262 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 43/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQK----- 55 G++AQ + L +A+N++N +T GF+ + +F++++ GA N Q+ Sbjct: 10 GMSAQ---QLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGA-PNQAGQEAVPEG 65 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + A+ L ++ GS +TG +LD A+ G +F + SP G I TR G F + Sbjct: 66 AMLGLGVRAAAIRNLHRQ-GSLANTGNQLDLAVNGRGYFQITSPAGEINYTRAGSFNKNN 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--GKV----IATMGLYSVD 164 G LV+ G Y V D A I IP + E G++ K G+V I + L + Sbjct: 125 AGQLVTMEG-YAV-DPA---ILIPANTTQVTINESGQVFAKTDGQVALQNIGQLTLANFA 179 Query: 165 MSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G + RE + P D+S +++G+LE SN + + E+ +I + Sbjct: 180 NESGLEPLGNGLYRETPASGAPVVGNP-GDVSYGKLQQGYLEGSNVDPVKEITSLITAQR 238 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 F + +I DE ++ + IR Sbjct: 239 AFEMNSKVIQAADEMAGTVSKGIR 262 >gi|56419762|ref|YP_147080.1| flagellar basal body rod protein FlgG [Geobacillus kaustophilus HTA426] gi|56379604|dbj|BAD75512.1| flagellar hook protein [Geobacillus kaustophilus HTA426] Length = 263 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 31/259 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------------GAIKNDIDQK 55 G+ A + +L + +N++N +T GF+ + F +++ GA + + K Sbjct: 4 GIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAGRGGTNPK 63 Query: 56 ISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVT 109 V G + + + GS +TG LD A+ GD +F + G + TR G F + Sbjct: 64 Q--VGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFVVGDASGNNRMYTRAGNFYLD 121 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVD 164 G +V+A G+Y +L + + +QIP + ++G G++ S I T+ L Sbjct: 122 SQGYIVNADGQY-LLGVGNSRLQIPTDAKSLSIGADGKVTIVDASGTLSTIGTIQLAKFA 180 Query: 165 MSQGFVRRENS----GISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQK 219 + G + N+ + P T +G T+ G LE SN + E +MI + Sbjct: 181 NNDGLEKAGNNLFRETTNSGTPTTGAPGANGTGTIVSGALEMSNVDLAEEFTEMIVAQRG 240 Query: 220 FNSITTLIDENEKSMLEAI 238 F + T +I +++ + E + Sbjct: 241 FQANTRIITTSDEILQELV 259 >gi|117619148|ref|YP_857342.1| flagellar basal-body rod protein FlgF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560555|gb|ABK37503.1| flagellar basal-body rod protein FlgF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 248 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 113/239 (47%), Gaps = 29/239 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ ++N++N +T GF++ + + + A + ++ F + + + + G ++TG Sbjct: 19 LAVRSNNLANANTTGFKS-DFEQARSMQAFGEGLPTRV-FAMAERPGQNLQHGMLMTTGR 76 Query: 79 ELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++G W A++ P+ G TR G +++ G+L +++G V+D PI +P Sbjct: 77 DLDVAVDGQGWIAVQDPKGGEAYTRMGNLQLSATGNLQTSTG-LNVVDDGGQPIVLPLPM 135 Query: 138 EIFNVGEKGEIS--------------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 E + G IS Q+ K++ + +V+ Q + R G + Sbjct: 136 EKIEINRDGTISGRPEGAAANLPENFQRIKLV-NPAVDAVEKGQDGLFRRKDGQNEAASA 194 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLEAIR 239 T V + G LE SN N + EM +I L ++F + I +EN+++ + +R Sbjct: 195 T-------VGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEENDEAQTQLLR 246 >gi|311992327|gb|ADQ26737.1| proximal rod protein [Aeromonas hydrophila] Length = 247 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 113/239 (47%), Gaps = 29/239 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ ++N++N +T GF++ + + + A + ++ F + + + + G ++TG Sbjct: 18 LAVRSNNLANANTTGFKS-DFEQARSMQAFGEGLPTRV-FAMAERPGQNLQHGMLMTTGR 75 Query: 79 ELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++G W A++ P+ G TR G +++ G+L +++G V+D PI +P Sbjct: 76 DLDVAVDGQGWIAVQDPKGGEAYTRMGNLQLSATGNLQTSTG-LNVVDDGGQPIVLPLPM 134 Query: 138 EIFNVGEKGEIS--------------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 E + G IS Q+ K++ + +V+ Q + R G + Sbjct: 135 EKIEINRDGTISGRPEGAAANLPENFQRIKLV-NPAVDAVEKGQDGLFRRKDGQNEAASA 193 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLEAIR 239 T V + G LE SN N + EM +I L ++F + I +EN+++ + +R Sbjct: 194 T-------VGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEENDEAQTQLLR 245 >gi|241766922|ref|ZP_04764728.1| flagellar basal-body rod protein FlgG [Acidovorax delafieldii 2AN] gi|241362626|gb|EER58474.1| flagellar basal-body rod protein FlgG [Acidovorax delafieldii 2AN] Length = 259 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 40/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQ------ 54 G++AQ + +L ++ N++N T G++ F ++ VGA ++ Q Sbjct: 11 GMSAQ---QTQLDVISHNLANVSTTGYKRNNAVFEDLIYQNLRQVGANSSEQSQLPTGLH 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 ++ VA+ +++ G+ +G + D A+ G +F + P G TRDG F + Sbjct: 68 LGLGVNVVATNRDF---RQGALQQSGKDFDLAINGAGFFQVSMPDGTTAYTRDGSFTIDK 124 Query: 111 DGSLVSASGKYPVLD-----MASVPIQIPQKDEIFNVGEKGEISQKGKV-----IATMGL 160 DG +V++SG YP+ D +V I E+ G+ G++ I GL Sbjct: 125 DGQMVNSSG-YPLTDGITKVAGAVKASIAANGEVTFTDSAGKAVGTGRLTLASFINPAGL 183 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQK 219 V + + +E+ I+ P T +G +K+GFLE SN N + E+ MI + Sbjct: 184 EPVGQN---LYKES--IASGNPQTGSPTSAGFGELKQGFLETSNVNVVEELVTMIQTQRA 238 Query: 220 F 220 + Sbjct: 239 Y 239 >gi|145297454|ref|YP_001140295.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] gi|142850226|gb|ABO88547.1| lateral flagellar hook protein LfgE [Aeromonas salmonicida subsp. salmonicida A449] Length = 397 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+IGL+ A+ Q LS +++N++N T GF++ + +F+ + G N++ Q Sbjct: 2 SFSIGLSGLRAVNQELSVISNNVANASTAGFKSSRAEFAAIYGVEMNNVSQNF------- 54 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G + TG LD A+ G +F L+ G TR G F+ L +A+G Sbjct: 55 ----DRNGDVMRTGKGLDLAISGSGFFVLKDSNGQTSYTRAGMFQRDASNYLTTANG 107 >gi|121607561|ref|YP_995368.1| flagellar basal body FlaE domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552201|gb|ABM56350.1| flagellar basal body FlaE domain protein [Verminephrobacter eiseniae EF01-2] Length = 426 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + N++N +TVGF++ + +F+E+V + D + + Sbjct: 3 FQQGLSGLNAASKSLDVIGHNVANANTVGFKSGRAEFAEMVASAIGSADGLNAGIGVDVA 62 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK- 120 +S++ GS TG LD A+ G +F L P G TR G FK+ DG++++ Sbjct: 63 AVSQQFGQGSLTITGNNLDVAINGAGFFTLTLPDGTPAYTRSGNFKLDKDGNMITNDAAR 122 Query: 121 ---YPV 123 YPV Sbjct: 123 VMGYPV 128 >gi|317180747|dbj|BAJ58533.1| flagellar basal-body rod protein [Helicobacter pylori F32] Length = 269 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + ++ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 +EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 HEMSTLIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|150395485|ref|YP_001325952.1| flagellar basal body rod protein FlgG [Sinorhizobium medicae WSM419] gi|150027000|gb|ABR59117.1| flagellar basal-body rod protein FlgG [Sinorhizobium medicae WSM419] Length = 262 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 20/136 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFV 59 A QL LE +A+N++N +T G++ + +FS+++ + N +Q I + + Sbjct: 13 AQQLNLE----VIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQAIVPEGAII 68 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G + + GS ++TG + D AL G WF +E+P G + TR G F G L Sbjct: 69 GLGVQTSAVRNLHIQGSLVNTGNDYDLALVGRGWFQIETPDGETVYTRSGAFNTNATGQL 128 Query: 115 VSASGKYPVLDMASVP 130 V+ G Y V+ +VP Sbjct: 129 VTIDG-YTVVPGVTVP 143 >gi|239907792|ref|YP_002954533.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] gi|239797658|dbj|BAH76647.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] Length = 260 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 110/226 (48%), Gaps = 30/226 (13%) Query: 13 LALEQRLSTVADNMSNTDTVGFR------------TIKVKFSEVVGAIKNDIDQKISF-- 58 +A++ ++ T+++N++N +TVGF+ T++V +E VG + ++ Sbjct: 13 VAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTLQVAGTETVGGNRLPTGLQVGLGV 72 Query: 59 -VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ ++ G +TG +LD A++G+ +F ++ + TR G FK+ DG++V+A Sbjct: 73 KPTTVHKFFTQ--GDMQNTGNQLDIAIQGEGFFKVDVNGRELYTRAGSFKLNQDGTIVTA 130 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT-MGLYSVDMSQG-------- 168 +G YP+ SVP + N + ++ AT + LY+ + G Sbjct: 131 NG-YPLQPAFSVPTETKTITITENGHLSCLDANSAELAATDIPLYTFINNAGLTAEGRNL 189 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + SG + + P + + T+ +GFLE SN + EM +I Sbjct: 190 YSTSQASGAANEVTP---GNQNAGTLAQGFLEMSNVELVDEMVGLI 232 >gi|218674739|ref|ZP_03524408.1| flagellar hook protein FlgE [Rhizobium etli GR56] Length = 433 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 22/117 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGK 63 A RLSTVADN++N +T G++ + FS +V G ++ + Q +S Sbjct: 16 AQANRLSTVADNIANVNTSGYKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVS------ 69 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ GD +F ++ G +LTR G F+ D+G+LV+++G Sbjct: 70 -----DQGDISYTTSTTDLAISGDGFFIVQGADGTPVLTRAGDFQKDDEGNLVNSAG 121 >gi|192360677|ref|YP_001982399.1| flagellar basal-body rod protein FlgF [Cellvibrio japonicus Ueda107] gi|190686842|gb|ACE84520.1| flagellar basal-body rod protein FlgF [Cellvibrio japonicus Ueda107] Length = 295 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 28/167 (16%) Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G I+TG ELD A++G + A+++P G TR G + G L +A+G PV+ A Sbjct: 117 AGPMITTGNELDVAIQGTGFIAIQAPDGTEAYTRAGNMTIDAAGMLRTANG-LPVMGAAG 175 Query: 129 VPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVD---MSQG----FVRRE 173 PI IP+ + + VG G IS G +A + L + D + +G F +R+ Sbjct: 176 -PINIPENERV-AVGADGTISMVGLGQGPEAMVEVARIKLVNPDVKNLEKGDDGLFRQRD 233 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P + VT++ G LE SN N++ E Q++ L +++ Sbjct: 234 GLNAQPAV---------DVTLRAGMLEASNVNAVTEFTQIMSLARQY 271 >gi|315649859|ref|ZP_07902942.1| fagellar hook-basal body protein [Paenibacillus vortex V453] gi|315274833|gb|EFU38214.1| fagellar hook-basal body protein [Paenibacillus vortex V453] Length = 281 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 63/286 (22%) Query: 13 LALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV------------------------ 45 + EQR +TV N++N +T G++ +++ F EV+ Sbjct: 1 MTQEQRHNTVTQNIANVNTAGYKATNSVQRSFPEVLVSMIGGNDSSNAGRKLGKFNTGVY 60 Query: 46 ----------GAIK-----NDIDQKISFV----ASGKEYLSKEVGSFISTGTELDFALEG 86 GA++ D SF A+G++Y G ++ E+ + EG Sbjct: 61 AEESISLYTEGALRETGKNTDFALVSSFTVQNPATGQDYPFDASGRYVDENGEVIYRPEG 120 Query: 87 DAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 +F ++ G TR+G F+V+ +G+L+S SG Y VLD + PI + F V E+ Sbjct: 121 --FFTVQDENGDTRYTRNGSFRVSPEGNLLSESG-YQVLDNNNRPIILTGSASDFTVNEQ 177 Query: 146 GEI---SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKR 196 GEI + G I +G+ V G +R N + P TP ++ GV V++ Sbjct: 178 GEIMDAAGNGTGI-ILGVSIVSQPHGLIREGNGVFRMSDPDGEVRFMTPADN--GV-VRQ 233 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 GF+E SN + M ++ + + + ++ ++++ +A+ I Sbjct: 234 GFIEGSNVDPTQSMVELTAALRAYETNQKIVQYYDRTLEKAVNEIG 279 >gi|23092316|gb|AAN08641.1| FlgF [Aeromonas hydrophila] Length = 248 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 37/243 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ +N++N +T+GF K+D +Q S A G+ S+ Sbjct: 19 LAVRGNNLANANTIGF--------------KSDFEQARSMQAFGEGLPSRVFAMTERPGQ 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G ++TG +LD A++G W A++ P+ G TR G +++ G+L +++G V+D Sbjct: 65 NLQHGMLMTTGRDLDVAVDGQGWIAVQDPKGGEAYTRMGNLQLSATGNLQTSTG-LNVVD 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIAT------MGLYSVDMSQGFVRRENSGISP 179 PI +P E + G IS + + A + V + V + G+ Sbjct: 124 DGGQPIVLPLPMEKIEINRDGTISGRPEGAAANLPEDFQRIQLVKPAADAVEKGQDGLFR 183 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKSMLE 236 + V + G LE SN N + EM +I L ++F + I +EN+++ + Sbjct: 184 RKDGQTEAASANVGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEENDEAQTQ 243 Query: 237 AIR 239 +R Sbjct: 244 LLR 246 >gi|239815263|ref|YP_002944173.1| hypothetical protein Vapar_2278 [Variovorax paradoxus S110] gi|239801840|gb|ACS18907.1| protein of unknown function DUF1078 domain protein [Variovorax paradoxus S110] Length = 395 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 9/125 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S +G+ L + L +A+N +N +T GF++ ++F+++ G+ + Sbjct: 1 MLESIYVGMTGLLGYSRGLRVIANNTANINTPGFKSSSLQFADMFYSGGNLGGGSTSQNR 60 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 DQ +++ LS + G TG +LD A++G FAL+ G TR G+FK D Sbjct: 61 DQVGFGLSTAGTSLSFKQGELRQTGNDLDMAVDGQGLFALQDANGKTTYTRAGQFKFDAD 120 Query: 112 GSLVS 116 G+LVS Sbjct: 121 GTLVS 125 >gi|77457728|ref|YP_347233.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens Pf0-1] gi|77381731|gb|ABA73244.1| flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1] Length = 246 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 22/222 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A+Q AL Q+ A+N++N T GF+ + + V G D +F S + Sbjct: 12 ASQNALAQKAH--ANNLANISTNGFQRDLEQARSMPVFG----DSFPARAFAMSERPATD 65 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 GS + TG +LD A+ G+ + A+++P G R G + G L + +G PV+ Sbjct: 66 FTPGSLVQTGRDLDVAVSGNGFIAVQNPNGGESYVRTGSLNIDALGVLRAGNG-MPVMGN 124 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD---MSQGFVRRENSGISPNI-- 181 PI +P + ++ VGE G IS + + VD + ++ N G+ +I Sbjct: 125 GG-PIAVPPEQQV-EVGEDGTISIRAMGEGPRVMAEVDRIKLVNPDIKNMNKGLDGSIYT 182 Query: 182 ---PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P P + + V + GFLE SN N++ EM ++ L ++F Sbjct: 183 KDGQPAPAD--ANVKLVSGFLESSNVNAVEEMTSVLALAKQF 222 >gi|312962296|ref|ZP_07776787.1| flagellar basal-body rod protein F [Pseudomonas fluorescens WH6] gi|311283223|gb|EFQ61813.1| flagellar basal-body rod protein F [Pseudomonas fluorescens WH6] Length = 246 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 38/230 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q AL Q+ A+N++N T GF + D++Q S G + ++ Sbjct: 12 ASQNALAQKAH--ANNLANISTNGF--------------QRDLEQARSMPVFGDSFPARA 55 Query: 70 V------------GSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVS 116 G+ I TG +LD A+ GD W A+++P G R V G L + Sbjct: 56 FAMTERPATDFSPGAMIETGRDLDVAVNGDGWMAVQTPDGGEAYVRSASMNVDALGVLRA 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD---MSQGFVRRE 173 +G P++ PI +P + +I VG G IS + + VD + Q ++ Sbjct: 116 GNG-MPIMGNGG-PIAVPPQQKI-EVGADGTISIRAMGEGPRVMAEVDRIKLVQPDLKNM 172 Query: 174 NSGISPNIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 N G+ I P + V + GFL+ SN N++ EM ++ L+++F Sbjct: 173 NKGLDGTIHTKDGKPAVADASVKLTSGFLQASNVNAVEEMTAVLALSKQF 222 >gi|289523333|ref|ZP_06440187.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503025|gb|EFD24189.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 256 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 36/252 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-RTIKVKFS---------EVVGAIKNDIDQKISFV 59 +A L E+ + ++N++N DT GF R I V S E VG + + I Sbjct: 10 SAMLVQEKVIDVASNNLANVDTAGFKRRISVNKSFPEVMIERREAVGPFERQVYWPIG-S 68 Query: 60 ASGKEYLSKEV-----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 AS LS+ G +ST LD A+ G +F+L G I +R G F + +G Sbjct: 69 ASLNVVLSETTVDLSEGQVVSTDNPLDVAISGRGFFSLRDGAGNIFYSRAGNFTLDANGF 128 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL-------YSVDMS 166 +V+ G +L VPI + + + E+G + G+++ + L Y + + Sbjct: 129 IVNQEG-LTLLGDGGVPINVGDVSSV-AIDERGTVVADGEILGAIQLFEFANPTYLRNYA 186 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---I 223 + + + P + TP+ + G LE SN N +YEM ++I + + + Sbjct: 187 KNLFQANEAAGEPVLVETPM-------LVPGALEKSNVNVVYEMVRLIEGQRAYEASART 239 Query: 224 TTLIDENEKSML 235 T+ DE SM+ Sbjct: 240 LTMQDEQTGSMI 251 >gi|294084416|ref|YP_003551174.1| flagellar basal-body rod protein FlgG [Candidatus Puniceispirillum marinum IMCC1322] gi|292663989|gb|ADE39090.1| flagellar basal-body rod protein FlgG [Candidatus Puniceispirillum marinum IMCC1322] Length = 262 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 40/261 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--------DIDQKISF- 58 GL AQ + R+ +A+N++N +T GF+ + F ++ ++ D D +F Sbjct: 12 GLNAQ---QTRMQVIANNLANVNTTGFKRDRANFETLLYQVRRSAGEETSADTDLTSAFA 68 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V +G ++ + GS I T LD A+EG +F + P G I TR+G F +G+ Sbjct: 69 VGTGARIVNTQKMMSQGSMIQTDNSLDLAIEGSGFFQVLLPDGQIGYTRNGSFSTNAEGT 128 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 L + SG Y + +P Q D I +V GEI + + M + + +G Sbjct: 129 LTTPSG-YVLQPEIQIPGNASQINISGDGIVSVIVAGEIEPQN--VGQMTIADFNNRRGL 185 Query: 170 ------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF--- 220 E + I P E G V+ G LE SN N + E+ MI + + Sbjct: 186 QPIGESFSIETAASGAAIIANPQEQGFGKLVQ-GSLEASNVNVVQELVNMIETQRAYEVS 244 Query: 221 -NSITTLIDENEKSMLEAIRN 240 SIT+ +DE ML I N Sbjct: 245 SKSITS-VDE----MLRFISN 260 >gi|149201611|ref|ZP_01878585.1| Flagellar distal rod protein [Roseovarius sp. TM1035] gi|149144659|gb|EDM32688.1| Flagellar distal rod protein [Roseovarius sp. TM1035] Length = 262 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI--SF 58 GL AQ A R+ +++N++N +T GF+ + F ++ GA ++ ++ + Sbjct: 12 GLNAQQA---RIQVISNNLANVNTTGFKRDRANFETLLYQTLRPAGAQTSEATEQTAPTT 68 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G +S E GS +T LD A++G +F + P G I TR+G F DG Sbjct: 69 LGTGVRLVSTEKMYTQGSLTTTDNALDLAIDGKGFFQVLMPDGRIGYTRNGTFSQNADGV 128 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQ 167 L ++SG + IQIP + ++ G IS + + + + L + Sbjct: 129 LTTSSGY-----VVQPEIQIPPEATSISISRDGIISVTLPDAVEAEEVGQLTLAQFANPR 183 Query: 168 G-------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G FV + +P + PLED G V+ G LE SN N + E+ +MI + + Sbjct: 184 GLEPVGETFVVESTASGAP-VVGNPLEDGMGDLVQ-GALETSNVNVVQELVEMIEAQRAY 241 >gi|170722892|ref|YP_001750580.1| flagellar hook protein FlgE [Pseudomonas putida W619] gi|169760895|gb|ACA74211.1| flagellar basal body FlaE domain protein [Pseudomonas putida W619] Length = 451 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKIS 57 SFNIGL+ A ++L +N++N +T GF++ + +F++V +G KN + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 A +++ +V +TG LD ++G +F L + TR G F+ + +V++ Sbjct: 62 LAAISQQFSQGDVN---NTGNVLDMGIQGQGFFVLSDNGSRVYTRAGAFQADKNNFVVTS 118 Query: 118 SG 119 G Sbjct: 119 DG 120 >gi|284041497|ref|YP_003391837.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945718|gb|ADB48462.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF---RTIKVKFSEVVGAIKNDIDQKIS 57 M+ I + +A + R +A++++N T G+ R + F +++ + N Q I Sbjct: 1 MERGLYIAASGMIAEQMRQDAIANDLANASTPGYKADRITQASFGDLLLSNSN-TGQVIG 59 Query: 58 FVASGKEYLSKEVGSFISTGTE-----LDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + +G Y +V T LD A+ G+ WF +++P G+ TR+G+F + G Sbjct: 60 PLGTGA-YADSKVTDLRPQATRVTEEPLDLAIVGEGWFGVQTPEGVRYTRNGQFSASPQG 118 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEI 139 L+ G+ PVL P+Q+ + + Sbjct: 119 QLIDQLGR-PVLGPGGQPVQLDARGHV 144 >gi|167626157|ref|YP_001676451.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] gi|167356179|gb|ABZ78792.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] Length = 261 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/246 (21%), Positives = 114/246 (46%), Gaps = 32/246 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ + +N Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + + +++V G ++T +LD A+EG +F +E G + +RDG+F Sbjct: 61 ELPSGLQLGTGTRVVGTQKVFTPGDMLTTNQQLDMAIEGQGFFQIEEANGELSYSRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK------GKVIATMG 159 +G +V++ G + VP I+IP++ + G +S + + + + Sbjct: 121 YRNSEGLMVTSQG------LPLVPNIEIPEEALTVTIASDGIVSAQMAGQTDAQELGQIT 174 Query: 160 LYSVDMSQGFVRREN-----SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 L + G R N +G S D + +++G LE +N N + EM +MI Sbjct: 175 LVNFTNPAGLEARGNNLYRETGASGAAVEGIAGDQALGQIRQGALEGANVNVVEEMVEMI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 STQRAY 240 >gi|91792665|ref|YP_562316.1| flagellar basal body rod protein FlgF [Shewanella denitrificans OS217] gi|91714667|gb|ABE54593.1| Flagellar basal-body rod FlgF [Shewanella denitrificans OS217] Length = 247 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 51/229 (22%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ A+N++N +T GF K+D+ Q S A G+ S+ Sbjct: 19 LAVRANNLANANTDGF--------------KSDLTQARSMQAFGEGLPSRVFAMTEIATS 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G+ +TG +LD A++GD W A+++P G TR G K + G L++ S PV+ Sbjct: 65 DFKAGALKTTGRDLDIAVKGDGWIAVQAPDGSEAYTRSGGLKFDNTGLLLN-SRNNPVMG 123 Query: 126 MASVPIQIP--------QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ------GFVR 171 S PI +P D I ++ +G ++ + +A + L + D SQ G R Sbjct: 124 -NSGPIVLPLPIDKLQISPDGIISIRPQGATAEVIEEVARIKLVNPDNSQMMRGEDGLFR 182 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + ++ P V V+ G +E SN N + EM +I + +++ Sbjct: 183 LTSGDVAAKDP--------SVQVESGAIEASNVNPVEEMVALISIQRQY 223 >gi|146305251|ref|YP_001185716.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp] gi|145573452|gb|ABP82984.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp] Length = 243 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 35/230 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-------- 70 L+ A+N++N +T GFR D++Q + G Y S+ + Sbjct: 19 LTVRANNLANVNTPGFRA--------------DLEQAQAVAVEGYGYDSRHLAQVKNNGV 64 Query: 71 ----GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G+ ++TG +LD A++G FA+E G TR+G +V D L + +G+ VL Sbjct: 65 SLAPGALMATGRDLDVAIQGQGLFAVEGDDGAERYTRNGALQVDADLRL-TLNGR-AVLG 122 Query: 126 MASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM--GLYSVDMSQGFVRRENSGISPNI 181 PI +P+ D + ++G G +S +G + + VD++ G + ++ SG+ Sbjct: 123 EGG-PIVLPEYDSL-HIGRDGTVSVIPRGDFLTAEVDRIRVVDVAAGDLIKDASGLLARS 180 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 P ED+ + G+LE SN ++ ++ + L + F + ++ E Sbjct: 181 DGQPAEDMEAPVLVSGYLEASNVGAIDQLVATMSLNRLFETQVKMMKAAE 230 >gi|167567751|ref|ZP_02360667.1| flagellar basal-body rod protein FlgF [Burkholderia oklahomensis EO147] gi|167574702|ref|ZP_02367576.1| flagellar basal-body rod protein FlgF [Burkholderia oklahomensis C6786] Length = 242 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 19/211 (9%) Query: 19 LSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 L A+N++N T GFR ++ + V D I A+ LS + G T Sbjct: 19 LEVHANNIANAQTDGFRAELEAARTRPVAGYGYDSRHLIELQAN---VLSADAGVVEETD 75 Query: 78 TELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 ELD A++G +F ++ P G TR G F++ DG+L + +G+ PV+ P+ +P Sbjct: 76 RELDAAIQGRGYFTVQGPNGGNAYTRAGNFQIDADGAL-TVNGR-PVIGEGG-PVVLPDF 132 Query: 137 DEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISP-NIPPTPLEDL 189 + +GE G +S + + + + L D S+ V+ E + P N P P D Sbjct: 133 TSV-RIGEDGTLSITVAGDTEVQAVDRLELVDADASE-LVKNETGLLVPRNGAPLPASD- 189 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V V G LE SN + + EM + L + F Sbjct: 190 -DVRVLGGHLERSNVSPVDEMTSTMALNRAF 219 >gi|153011508|ref|YP_001372722.1| flagellar hook protein FlgE [Ochrobactrum anthropi ATCC 49188] gi|151563396|gb|ABS16893.1| flagellar basal body FlaE domain protein [Ochrobactrum anthropi ATCC 49188] Length = 426 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLS VADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 39 GVSGMNAQANRLSAVADNIANASTVGYKRAETQFSSLVLPSTGGQYNSGSVLTDVRYGIS 98 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++G+ +F ++ G LTR G F +G+LV+ Sbjct: 99 -----------DQGGIRSTSSTTDLAIDGNGYFVVQGADGSTFLTRAGSFVPDKNGNLVN 147 Query: 117 ASGKY 121 ++G Y Sbjct: 148 SAGYY 152 >gi|114562344|ref|YP_749857.1| flagellar basal body rod protein FlgG [Shewanella frigidimarina NCIMB 400] gi|114333637|gb|ABI71019.1| flagellar basal-body rod protein FlgG [Shewanella frigidimarina NCIMB 400] Length = 262 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 41/233 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---------IDQKIS 57 A + ++ +++N++N TVGF+ + F +++ G I +D I Sbjct: 14 AQQTNIAVISNNVANASTVGFKKSRAVFEDLLYQTVNQAGGISSDNSKLPNGLNIGAGTK 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 VA+ K + G+ ++T LD +EG +F ++ P G TR+G+F + D G +V+ Sbjct: 74 VVATQKMFTQ---GNMLTTDNSLDLMIEGSGFFEVQMPDGTAAYTRNGQFSLDDTGQIVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRENS 175 Y V PI IP V GE+S Q A+ + + M+ F+ + Sbjct: 131 PGSGYVV----QPPITIPDDSTSITVSASGEVSVQTPGTAASQVIGQLTMTD-FINP--A 183 Query: 176 GISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G+ P TP++ L G+ ++++G LE SN N E+ +I Sbjct: 184 GLDPLGQNLYTETGASGTPIQGTASLDGLGSIRQGALETSNVNVTEELVNLIQ 236 >gi|70731823|ref|YP_261565.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf-5] gi|68346122|gb|AAY93728.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf-5] Length = 447 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 20/127 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A ++L +N++N T GF++ + +F++V A K + SG Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADVYSATK---------LGSGT 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + + V G +TG LD ++G +F L + + TR G FK +G Sbjct: 53 QVIGNGVRLANVSQQFTNGDINNTGNVLDMGIQGQGFFVLSTNGSLTYTRAGTFKTDKEG 112 Query: 113 SLVSASG 119 + ++ G Sbjct: 113 YITNSDG 119 >gi|51246533|ref|YP_066417.1| flagellar hook basal body protein (FlgG) [Desulfotalea psychrophila LSv54] gi|50877570|emb|CAG37410.1| probable flagellar hook basal body protein (FlgG) [Desulfotalea psychrophila LSv54] Length = 261 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 115/265 (43%), Gaps = 33/265 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 S G A + + +A+N++N +T GF+ F +++ G+ + + Sbjct: 4 SLWTGTTGMQAQQLNIDIIANNLANVNTTGFKKSSADFQDLLYQTMKVPGSQTSPDTESP 63 Query: 57 SFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 + + G V G I T ELD A++G +F +E+P G I TR G FK Sbjct: 64 TGILVGLGVKPAAVTKVFTQGDLIQTENELDVAIQGRGFFQIEAPDGNIKYTRAGAFKRD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSV 163 +G + S+ G YP++ I IP + ++GE G +S K I T+ L Sbjct: 124 SNGRMTSSDG-YPLIP----EITIPSGAKQVSIGETGIVSVKLDSDSTETEIGTIELAGF 178 Query: 164 DMSQGFVR-----RENSGISPNIP-PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 G E +G S P E+ G +++ +LE SN N + EM MI T Sbjct: 179 TNPAGLAAIGKNLFEETGASGTATIGIPGEEGYGTLIQQ-YLEGSNVNLVAEMAAMIS-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 Q+ I + + + M++ + ++A Sbjct: 237 QRAYEINSSMVKTSDQMMQTVNDLA 261 >gi|226225711|ref|YP_002759817.1| flagellar basal-body rod protein FlgG [Gemmatimonas aurantiaca T-27] gi|226088902|dbj|BAH37347.1| flagellar basal-body rod protein FlgG [Gemmatimonas aurantiaca T-27] Length = 262 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 21/164 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF----------SEVVGAIKN 50 M + +A + R +A N++N +T GF+ + F +V+G Sbjct: 1 MDPALRAAATGMMAQQTRTEVIAHNLANVNTPGFKRSRAHFEDLLYQTVQGQQVLGENDT 60 Query: 51 DIDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 I I V G E G TG LD A+EG+ +F ++ P G +RDG Sbjct: 61 QITPAIQ-VGRGTRLAGVQRLHEQGPIEETGRNLDIAIEGEGFFQIQLPSGETAYSRDGS 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +++D G LV+++G Y + P++IP F V G +S Sbjct: 120 LQISDQGVLVTSAG-YAL----QPPVRIPDDASEFTVSATGVVS 158 >gi|296283228|ref|ZP_06861226.1| flagellar basal body rod protein FlgG [Citromicrobium bathyomarinum JL354] Length = 261 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 37/246 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 S +I LA + + +++N++N +T GF+ + +F +++ GA + + Sbjct: 3 SLSIAGTGMLAQQTNVDVISNNIANMNTTGFKRQRAQFQDLLYQQVSRPGASSAGPEARA 62 Query: 57 -------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 + V +G Y E G+ + T D A++G +F ++ P G I TRDG F++ Sbjct: 63 PTGIQIGAGVRTGGVYRIAEQGALVQTDNRFDLAIQGLGYFQVQMPTGEIGYTRDGTFQL 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----------GKV-IAT 157 +D G LV++ G + I IPQ V GE+ K G++ +AT Sbjct: 123 SDQGELVTSQGL-----VVEPGITIPQGAVDVAVSRTGEVQIKIAGETEMQTVGQIELAT 177 Query: 158 MGLYSVDMSQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + ++G F+ SG P I P E G +V +GF+E SN N + E+ +I Sbjct: 178 FVNEAGLEAKGDNLFLATAASG-EPTI-AAPGEPGFG-SVAQGFVEASNVNPVAEITALI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 TAQRAY 240 >gi|304409978|ref|ZP_07391597.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|307302309|ref|ZP_07582067.1| fagellar hook-basal body protein [Shewanella baltica BA175] gi|304351387|gb|EFM15786.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|306914347|gb|EFN44768.1| fagellar hook-basal body protein [Shewanella baltica BA175] Length = 453 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 26/153 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N I G Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANANTIGFKESRAEFADV---YANSIFSNAKTAVGGG 58 Query: 64 EYLSK-----EVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLV 115 S+ GS T LD A++G +F S G + TR G FKV + +V Sbjct: 59 VATSQVAQQFHQGSLQLTSNSLDMAIKGGGFFVTSSELGTLDHSFTRAGAFKVDSNNYMV 118 Query: 116 SASGKY----PV----------LDMASVPIQIP 134 ++G Y PV L A P+QIP Sbjct: 119 DSAGNYLQTFPVDKDGNSTSVSLTTAK-PVQIP 150 >gi|163856435|ref|YP_001630733.1| hypothetical protein Bpet2124 [Bordetella petrii DSM 12804] gi|163260163|emb|CAP42465.1| flgE [Bordetella petrii] Length = 413 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K+S + + Sbjct: 3 FGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKVSAI---NQ 59 Query: 65 YLSKEVGSFISTGTELDFALEG-DAWFALESPR-GIILTRDGRFKVTDDGSLVSASG--- 119 S VG+ TG E D A++G +F L P G+ +R+G F V D LV+A G Sbjct: 60 RFS--VGNVTVTGGEYDIAIDGPKGFFRLTDPSGGVFYSRNGEFLVDKDFYLVNAQGYRL 117 Query: 120 -KYPVLDMASVPI--QIPQKD 137 Y + S P+ ++PQ + Sbjct: 118 TGYAAGAVGSAPVDLRLPQGN 138 >gi|332704823|ref|ZP_08424911.1| flagellar basal-body rod protein FlgG [Desulfovibrio africanus str. Walvis Bay] gi|332554972|gb|EGJ52016.1| flagellar basal-body rod protein FlgG [Desulfovibrio africanus str. Walvis Bay] Length = 260 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 43/236 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------------VGAIKND 51 G+ AQ + + T+++N++N +T+GF+ + +F ++ V + Sbjct: 11 GMVAQ---QMNIDTISNNLANVNTIGFKKSRAEFEDLMYQTMKIAGTRTEGGNVTPVGIQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 + + + K + G F +T LD A+EGD +F ++ TR G FK+ ++ Sbjct: 68 MGMGVRPMTVHKFFTQ---GDFQNTSNPLDIAIEGDGFFLVDFNGTEAFTRAGAFKLDNE 124 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGLYSVDMS 166 G +V+A+G Y + +VP P+ + + E+G ++ ++G +++ + LY+ + Sbjct: 125 GRMVTANG-YLLQPEFTVP---PETVNVV-ISEQGHLAALDRQGNELSSTDLQLYTFQNN 179 Query: 167 QG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G F+ E SG P TP E+ G T+ +GFLE SN + EM MI Sbjct: 180 AGLNAIGRNLFIETEASG--PATAGTPGEENVG-TLAQGFLEGSNVELVDEMVGMI 232 >gi|219685570|ref|ZP_03540386.1| flagellar basal-body rod protein FlgG [Borrelia garinii Far04] gi|219672848|gb|EED29871.1| flagellar basal-body rod protein FlgG [Borrelia garinii Far04] Length = 265 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 117/263 (44%), Gaps = 40/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPNGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATM 158 LV++ G Y VL P + Q + E+G +S K + + Sbjct: 128 LVTSQG-YKVLPNIFFPEEYIQNS--ITISEQGIVSVKIDNSNEPIELGQIEISRFVNPA 184 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + + +E +G I P + G+ +++G LE SN + EM MI + Q Sbjct: 185 GLSAIGSN---LFKETAGSGQEITGIPGSEGMGI-LRQGILEMSNVSIAEEMVTMI-VAQ 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + + +ML N+ Sbjct: 240 RAYEINSKAIQTSDNMLGIANNL 262 >gi|319944135|ref|ZP_08018413.1| flagellar hook protein FlgE [Lautropia mirabilis ATCC 51599] gi|319742629|gb|EFV95038.1| flagellar hook protein FlgE [Lautropia mirabilis ATCC 51599] Length = 417 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 17/132 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 +F GL+ A + L T+ N++N TVGF+ + +F++V V + I ++ Sbjct: 2 AFQQGLSGLNAAARHLDTIGHNVANASTVGFKASRAEFADVYATTVYGVSNVSPGIGTEV 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +A + S+ G+ +T LD + G +F + G I TR+G+FK+ G +V Sbjct: 62 GAIA---QQFSQ--GALTTTNNSLDLGINGGGFFRMSDNGGAITYTREGQFKLDKSGYIV 116 Query: 116 SASGK----YPV 123 +ASGK YPV Sbjct: 117 NASGKRLTGYPV 128 >gi|53717916|ref|YP_106902.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei K96243] gi|53724567|ref|YP_104800.1| flagellar basal body rod protein FlgG [Burkholderia mallei ATCC 23344] gi|67641540|ref|ZP_00440317.1| flagellar basal-body rod protein FlgG [Burkholderia mallei GB8 horse 4] gi|76808723|ref|YP_331881.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 1710b] gi|121598854|ref|YP_994293.1| flagellar basal body rod protein FlgG [Burkholderia mallei SAVP1] gi|124386502|ref|YP_001028058.1| flagellar basal body rod protein FlgG [Burkholderia mallei NCTC 10229] gi|126439033|ref|YP_001057324.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 668] gi|126450732|ref|YP_001082865.1| flagellar basal body rod protein FlgG [Burkholderia mallei NCTC 10247] gi|126454438|ref|YP_001064566.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 1106a] gi|134283616|ref|ZP_01770315.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|167001539|ref|ZP_02267334.1| flagellar basal-body rod protein FlgG [Burkholderia mallei PRL-20] gi|167717662|ref|ZP_02400898.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei DM98] gi|167736705|ref|ZP_02409479.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 14] gi|167813804|ref|ZP_02445484.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 91] gi|167822320|ref|ZP_02453791.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 9] gi|167843910|ref|ZP_02469418.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei B7210] gi|167892412|ref|ZP_02479814.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 7894] gi|167900910|ref|ZP_02488115.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei NCTC 13177] gi|167917166|ref|ZP_02504257.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei BCC215] gi|217425015|ref|ZP_03456511.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 576] gi|226199816|ref|ZP_03795367.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei Pakistan 9] gi|237810463|ref|YP_002894914.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei MSHR346] gi|242317698|ref|ZP_04816714.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106b] gi|254175110|ref|ZP_04881771.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 10399] gi|254182138|ref|ZP_04888735.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|254196575|ref|ZP_04902999.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei S13] gi|254201898|ref|ZP_04908262.1| flagellar basal-body rod protein FlgG [Burkholderia mallei FMH] gi|254207232|ref|ZP_04913583.1| flagellar basal-body rod protein FlgG [Burkholderia mallei JHU] gi|254261052|ref|ZP_04952106.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710a] gi|254295816|ref|ZP_04963273.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|254359734|ref|ZP_04976005.1| flagellar basal-body rod protein FlgG [Burkholderia mallei 2002721280] gi|52208330|emb|CAH34263.1| flagellar basal-body rod protein [Burkholderia pseudomallei K96243] gi|52427990|gb|AAU48583.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 23344] gi|76578176|gb|ABA47651.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710b] gi|121227664|gb|ABM50182.1| flagellar basal-body rod protein FlgG [Burkholderia mallei SAVP1] gi|124294522|gb|ABN03791.1| flagellar basal-body rod protein FlgG [Burkholderia mallei NCTC 10229] gi|126218526|gb|ABN82032.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 668] gi|126228080|gb|ABN91620.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106a] gi|126243602|gb|ABO06695.1| flagellar basal-body rod protein FlgG [Burkholderia mallei NCTC 10247] gi|134245025|gb|EBA45120.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|147747792|gb|EDK54868.1| flagellar basal-body rod protein FlgG [Burkholderia mallei FMH] gi|147752774|gb|EDK59840.1| flagellar basal-body rod protein FlgG [Burkholderia mallei JHU] gi|148028948|gb|EDK86880.1| flagellar basal-body rod protein FlgG [Burkholderia mallei 2002721280] gi|157806194|gb|EDO83364.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|160696155|gb|EDP86125.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 10399] gi|169653318|gb|EDS86011.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei S13] gi|184212676|gb|EDU09719.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|217392035|gb|EEC32061.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 576] gi|225928167|gb|EEH24203.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei Pakistan 9] gi|237504504|gb|ACQ96822.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei MSHR346] gi|238522491|gb|EEP85935.1| flagellar basal-body rod protein FlgG [Burkholderia mallei GB8 horse 4] gi|242140937|gb|EES27339.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106b] gi|243062740|gb|EES44926.1| flagellar basal-body rod protein FlgG [Burkholderia mallei PRL-20] gi|254219741|gb|EET09125.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710a] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 114/275 (41%), Gaps = 47/275 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y GS TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GSLQQTGNSKDVAINGQGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VI 155 RDG F+ G LV++SG Y V+ I IPQ +G G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVIPA----ITIPQNANSLTIGSDGVVSVTQPGSNNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 + + + G F +SG +PN+ L T+K+G++E SN N + Sbjct: 171 GALQIATFINPAGLDAKGENLFAETTSSG-APNVSQPGLNGAG--TLKQGYVESSNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E+ MI TQ+ I + ML+ + ++ Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMS 261 >gi|237752808|ref|ZP_04583288.1| flagellar basal-body rod protein distal rod protein [Helicobacter winghamensis ATCC BAA-430] gi|229376297|gb|EEO26388.1| flagellar basal-body rod protein distal rod protein [Helicobacter winghamensis ATCC BAA-430] Length = 263 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 46/235 (19%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 L + ++ ++N+SN +T G+R + +F+++ G+ ++ + + G Sbjct: 13 LGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETTLSPTGIEVGLGV 72 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 V G+F T LD A+ G+ +F +E P G I TRDG FK D+G++V+A Sbjct: 73 RPTAVQKIFSQGNFKETEQNLDVAITGNGFFQIELPDGTIAYTRDGSFKRDDEGNVVNAQ 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-----IATMGLYSV 163 G V + I IP N+G+ G E++Q G++ I GL+++ Sbjct: 133 GYLLVPN-----ITIPDDATQINIGKDGTVTVVQGNETEVNQLGQIETVNFINPAGLHAL 187 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 +N ++ N P+ G+ + +GF+E SN + EM +I Sbjct: 188 G--------DNLYLNTNASGDPIVGTPGLNGFGQLAQGFVETSNVKLVEEMTDLI 234 >gi|224531677|ref|ZP_03672309.1| flagellar basal-body rod protein FlgG [Borrelia valaisiana VS116] gi|224511142|gb|EEF81548.1| flagellar basal-body rod protein FlgG [Borrelia valaisiana VS116] Length = 265 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 44/265 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQDRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATHRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVL-----------------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 LV++ G Y VL D V ++I +E +G+ EIS + + Sbjct: 128 LVTSQG-YKVLPNIFFPEEYIQNSITISDQGIVSVKIDNNNEPIELGQI-EIS---RFVN 182 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 GL ++ + + +E +G I P + G +K+G LE SN + EM MI + Sbjct: 183 PAGLSAIGSN---LFKETAGSGQEIAGIPGTEGMG-RLKQGILEMSNVSIAEEMVTMI-V 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + +ML N+ Sbjct: 238 AQRAYEINSKAIQTSDNMLGIANNL 262 >gi|160939651|ref|ZP_02086999.1| hypothetical protein CLOBOL_04543 [Clostridium bolteae ATCC BAA-613] gi|158437442|gb|EDP15206.1| hypothetical protein CLOBOL_04543 [Clostridium bolteae ATCC BAA-613] Length = 244 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 31/175 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------------GAIKNDIDQKISFVA 60 A ++ L ++NM+N T G+++++ F++++ ++ND Sbjct: 3 AFQKDLDVTSNNMANISTNGYKSMRSSFNDLLYTQMDMRPQAQVGHGVRND--------G 54 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKV--TDDGSLV 115 G + + G F T ELDFA+ G+A+FA+ E TRDG F++ TDDG+ + Sbjct: 55 PGTTF---QQGIFRKTDRELDFAISGNAFFAIQTSEDEEEPAYTRDGAFQISSTDDGNYL 111 Query: 116 SASGKYPVLDMASVPIQIPQK-DEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 + S VLD PI++ K E + GE+ G ++ +GL+ + +G Sbjct: 112 TTSDGSYVLDQDGEPIELEYKTSEDGGDNDAGELDLDG-LVERIGLFVCENPEGL 165 >gi|330445350|ref|ZP_08309002.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489541|dbj|GAA03499.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 27/161 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ + +ST+++N++N TVGF+ + F ++ +I+Q Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGFKKGRAVFEDL---FYQNINQPGGQSTQDTTLPT 64 Query: 56 -ISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + A K +++V G+ +T +D +EGD +F + P G I TR+G+F + Sbjct: 65 GLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPDGNIGYTRNGQFTINA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG LV++ YPV I +P+ VG GE+S + Sbjct: 125 DGQLVTSGSGYPV----QPEIVVPEDAVGITVGTDGEVSAR 161 >gi|300871597|ref|YP_003786470.1| flagellar basal-body rod protein FlgG [Brachyspira pilosicoli 95/1000] gi|300689298|gb|ADK31969.1| flagellar basal-body rod protein, FlgG [Brachyspira pilosicoli 95/1000] Length = 264 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 23/160 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDID----QKISFVA 60 ++ + T+A+N++N +T+G++ ++ F +++ A ++ + Q V Sbjct: 14 GMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDTVTPVGLQTGLGVK 73 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS +TG +LD ALEG+ +F + P G + TRDG FKV +G LV+++G Sbjct: 74 SAATQKMFDQGSLQATGNKLDLALEGEGFFQVLMPDGSVSYTRDGSFKVDANGQLVTSNG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 Y ++ P E F V EK IS++G V T+G Sbjct: 134 -YKLVPEIIFP-------ENFLV-EKINISREGVVSVTIG 164 >gi|238796906|ref|ZP_04640410.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] gi|238719166|gb|EEQ10978.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] Length = 260 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---IDQKIS 57 GL AQ + + +++N++N T GF+ + F +++ GA ++ I + Sbjct: 11 GLEAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQTTIPTGLQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + ++ + G+ T D A++G +F ++ G +RDG F+ +G Sbjct: 68 LGTGVRPVATERIHSQGNLTQTNNSKDLAIQGHGFFQVQMADGTTAYSRDGSFQFDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIATM----- 158 LV++SG YPV I IPQ + VG G +S Q G++ + Sbjct: 128 LVTSSG-YPV----QPAITIPQDADTLTVGNDGIVSVTVPGQTAPQQVGQLTVSTFINDS 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL S+ + R S +PN L G T+K+G++E SN N E+ MI TQ Sbjct: 183 GLESI--GENLYRETQSSGAPNETTPGLN--GGGTLKQGYIETSNVNVAEELVNMIQ-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + ML+ + + Sbjct: 238 RAYEINSKAVSTSDQMLQRLTQL 260 >gi|94312669|ref|YP_585878.1| flagellar hook protein [Cupriavidus metallidurans CH34] gi|93356521|gb|ABF10609.1| flagellar hook protein [Cupriavidus metallidurans CH34] Length = 415 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 11/125 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F G++ A L + +N++N +TVGF+ +F++V K + +++ V Sbjct: 3 FGQGVSGLNAAASNLDVIGNNIANANTVGFKQSTAQFADVYAGSKIGLGTRVNSVVQ--- 59 Query: 65 YLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 S G+ STG LD A+ G+ +F L S G + +R+G+F+ DDG LV+ASG Sbjct: 60 --SFTNGNISSTGRNLDVAISNGNGFFRLASTDGGVYYSRNGQFQRLDDGRLVNASGLQV 117 Query: 120 -KYPV 123 YP Sbjct: 118 TGYPA 122 >gi|323341367|ref|ZP_08081611.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] gi|323091244|gb|EFZ33872.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] Length = 256 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 23/242 (9%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDI--DQKISFVASG------- 62 A + + V++N++N DT+G++ + F E++ G N++ Q VA Sbjct: 16 AYQHEMDVVSNNLANVDTLGYKDKRTTFQELLNNGTNANEVGLSQNAGNVAINAGLNVQQ 75 Query: 63 -KEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGK 120 E LS+ G+F ST D A++G+ +F + + + LTRDG F+ DG+LV++ G Sbjct: 76 VNENLSQ--GAFKSTAGTYDLAIDGEGYFGVRDGANNLYLTRDGSFRRDADGNLVTSKG- 132 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSG 176 V ++VP KD ++ G +S + G+++ S+DM+ + Sbjct: 133 MKVEVQSNVPSSQWPKDGEVSISTSGYVSIGNVRVGRILLFRPQNSIDMND--IGNNLYR 190 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 N+ + + + +G +E SN + M +MI +TQ+ + + ++ ML+ Sbjct: 191 CDGNLISSANNNAGFGQINQGLVELSNVDVADTMSKMI-ITQRAYQMNSKALQSTDEMLQ 249 Query: 237 AI 238 I Sbjct: 250 TI 251 >gi|261856359|ref|YP_003263642.1| flagellar basal-body rod protein FlgF [Halothiobacillus neapolitanus c2] gi|261836828|gb|ACX96595.1| flagellar basal-body rod protein FlgF [Halothiobacillus neapolitanus c2] Length = 247 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 100/244 (40%), Gaps = 51/244 (20%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK- 68 A Q L Q ST A+N++N T GF K D+D S G Y S+ Sbjct: 12 AKQTLLAQ--STNANNLANVSTQGF--------------KADLDAFQSMPVYGPGYASRV 55 Query: 69 -----------EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 G ++TG LD AL+G + A+++P G TR G ++ +G L + Sbjct: 56 YAQDERSGTDFAQGPLMTTGRSLDVALKGQGFMAVQAPDGSTAYTRRGDLHISPNGQLQT 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS- 175 +G PVL PI IP +I +G+ G IS +I G + +R N Sbjct: 116 GTGA-PVLGNQG-PIAIPPASKIDILGD-GTIS----IIPLGGDVNAPAQIDRIRLVNPP 168 Query: 176 ------------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + PN P P D + V V G LE SN N + M +MI + F Sbjct: 169 LADLQKRGDGLFALKPNT-PVPQPD-AAVQVASGVLEGSNVNPVDSMVKMIEYGRLFEMQ 226 Query: 224 TTLI 227 T +I Sbjct: 227 TKMI 230 >gi|167626155|ref|YP_001676449.1| flagellar hook protein FlgE [Shewanella halifaxensis HAW-EB4] gi|167356177|gb|ABZ78790.1| flagellar basal body FlaE domain protein [Shewanella halifaxensis HAW-EB4] Length = 402 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 18/129 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----NDIDQKISFV 59 SFNI L+ A Q L+T+++N++N+ TVGFR+ + +FS + + N ++ +F Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFSAIYNGGQAGGVNVMNTSQNFS 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 A GS TG +LD ++G+ +F L G R G F DG + + Sbjct: 62 AG---------GSLTYTGRQLDMGIQGEGFFMLSGQDGSTTYARAGMFNQNADGFITDPA 112 Query: 119 GK----YPV 123 G YPV Sbjct: 113 GSRLQGYPV 121 >gi|87119674|ref|ZP_01075571.1| Flagella basal body rod protein [Marinomonas sp. MED121] gi|86165150|gb|EAQ66418.1| Flagella basal body rod protein [Marinomonas sp. MED121] Length = 261 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 42/232 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ---------KIS 57 A++++LS +++N++N T GF+ + F +++ G +++ Q + Sbjct: 14 AMDKQLSVISNNLANVSTTGFKKDRAVFEDLLYHTVQQPGGLQSQNTQLPSGLQMGAGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 A+ K++ G + T +LD A++G +F + P G + TRDG+F++ +G LV+ Sbjct: 74 VSATQKDF---SEGDYNVTDRDLDVAIQGQGFFQILMPDGNMGYTRDGQFQLNSEGDLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSVDMSQGFVRRE 173 +SG + + IPQ +G+ G +S Q +G S+ GF+ E Sbjct: 131 SSGF-----LVEPQVTIPQDAMSVTIGDDGTVSIVRQGASESEGVGQLSL---AGFINPE 182 Query: 174 N-SGISPNI------PPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 S I N+ P+ D+ G + V++ +E SN NS+ E+ +I Sbjct: 183 GLSSIGQNLFVETSASGAPIIDVPGTSALGNVRQNMVETSNVNSVEELVSLI 234 >gi|15615012|ref|NP_243315.1| flagellar basal body rod protein FlgG [Bacillus halodurans C-125] gi|10175069|dbj|BAB06168.1| flagellar hook protein [Bacillus halodurans C-125] Length = 263 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 17/156 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ + +L + +N++N +T G++ + F ++V GA + ++ + Sbjct: 8 GISGMRNFQTKLDVIGNNIANVNTFGYKKGRTTFQDMVSQQLAGATAPGANRGGVNPRQ- 66 Query: 58 FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 V G + S GS +T ELD + GD +F ++ TR G F G+ Sbjct: 67 -VGLGMQLASIDNVHTQGSLQNTNRELDLGISGDGFFQVQDGDTFYYTRSGNFYFDQQGT 125 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V+A G ++D PI +P + F++G+ G ++ Sbjct: 126 IVNAQG-LRLMDTNGNPITVPTTAQSFSIGQDGTVT 160 >gi|221199741|ref|ZP_03572784.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2M] gi|221208654|ref|ZP_03581654.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2] gi|221171465|gb|EEE03912.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2] gi|221179980|gb|EEE12384.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2M] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 47/276 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y GS TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GSLTQTGNSKDVAINGSGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----I 155 RDG F+ G LV++SG Y +L I +PQ +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQILPA----ITVPQNATSLTIGKDGVVSVTQPGSSNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 ++ + + G F +SG +PN+ L T+ +G++E SN N + Sbjct: 171 GSLQIATFINPAGLEAKGENLFAETTSSG-APNVSQPGLNGAG--TLNQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|168180937|ref|ZP_02615601.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] gi|182668349|gb|EDT80328.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] Length = 255 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 25/248 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S ++ ++LE + T++ N+SN TVG+++ + F + + + D+K Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 56 ISFVASGKEYLSK--EVGSFIS------TGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I + G +K EV + + TG DFALEG +F +E+ TRDG F Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 V G LV+ SG Y V+ + ++ IF VG K + I G+ S Sbjct: 121 VDTRGYLVNDSG-YNVM---GINRNTGAREAIF-VGNKTIGTDASGNIILNGVPSYSFQV 175 Query: 168 GFVRRENS--GISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS-- 222 NS I N+ ++++G+ V++ LE SN N EM M+ + F + Sbjct: 176 ADFNDYNSLKKIGDNLFEGNNPQNINGI-VRQNSLEKSNVNVTNEMVTMLTTMRSFETNQ 234 Query: 223 -ITTLIDE 229 I IDE Sbjct: 235 KIVQSIDE 242 >gi|197120123|ref|YP_002140550.1| flagellar basal body rod protein FlgG [Geobacter bemidjiensis Bem] gi|197089483|gb|ACH40754.1| flagellar basal body rod protein FlgG [Geobacter bemidjiensis Bem] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 38/230 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEYL 66 A + + VA+N++N T GF+ + F +++ GA + + + G Sbjct: 14 AQQLNIDVVANNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNATTIPTGIQVGLGVR 73 Query: 67 SKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 V G+ I+TG ELD A++GD + ++ G TR G FK G +V++ G Sbjct: 74 PGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQSDGSTAYTRAGAFKRDGQGRVVTSDG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIA----TMGLYSVDMSQG----- 168 + PV+ + IP VG G +S Q G+ A T+ L S G Sbjct: 134 Q-PVIP----EVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQLASFSNPAGLNAIG 188 Query: 169 ---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 F+ ++SG + T +G+ T+++GFLE+SN + M EM MI Sbjct: 189 KNLFLPTDSSGAA----TTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMI 234 >gi|254462012|ref|ZP_05075428.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium HTCC2083] gi|206678601|gb|EDZ43088.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium HTCC2083] Length = 261 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 120/248 (48%), Gaps = 52/248 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVA 60 G++AQ + R+ +++N++N T G+ T + +F+++ G I N D + + Sbjct: 10 GMSAQ---QMRVEVISNNLANMSTTGYNTRRAEFADLHYQQMSRAGTI-NASDGTV--LP 63 Query: 61 SGKE------------YLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 +G + YL++ GS +T ++LD A++G + + P G TRDG K Sbjct: 64 TGVQLGLGVRPSSVSVYLAQ--GSLSATNSDLDVAIDGQGYLKVTMPSGASAYTRDGALK 121 Query: 108 VTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 +G +V+ G YP+ VP I IP + ++ GE+ + + +++ L Sbjct: 122 RNAEGLIVTNDG-YPI-----VPEIVIPPEARSVSINGDGEVFAYFNETAQAQLLGQFTL 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 ++G F+ E SG P+ TP D G T+++G+LEDS+ +++ E+ + Sbjct: 176 AGFTNAKGLEAIGSNLFMETEASG--PSQVTTPGTDGLG-TLRQGYLEDSSVDAVREVTE 232 Query: 213 MIHLTQKF 220 +I + + Sbjct: 233 LIEAQRGY 240 >gi|32266589|ref|NP_860621.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] gi|32262640|gb|AAP77687.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] Length = 277 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 22/140 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 MQ+ + + RL +++N++N +T GF+ V + + + +Q Sbjct: 1 MQSGYYNTTGGMVTQFNRLDLISNNLANLNTTGFKRDDVVIGDYLRLFETHKEQLPIEDH 60 Query: 55 -------------KISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIIL 100 ++ ++ +EY + +GS T LDFAL+ +A+F +++P GI Sbjct: 61 TRKAAKFLNRTMDRVPIIS--EEYTDRSIGSLAQTDNTLDFALQHQNAFFVVKTPDGIRY 118 Query: 101 TRDGRFKVTDDGSLVSASGK 120 TRDG F + DG +VS G Sbjct: 119 TRDGNFHIDADGHIVSKEGH 138 >gi|134297196|ref|YP_001120931.1| flagellar basal body rod protein FlgG [Burkholderia vietnamiensis G4] gi|134140353|gb|ABO56096.1| flagellar basal-body rod protein FlgG [Burkholderia vietnamiensis G4] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 47/271 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++NT T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y G TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GGLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VI 155 RDG F+ G LV++SG Y +L I +PQ + +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQILPA----ITVPQNAQSLTIGKDGVVSVTQPGSNNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 ++ + + G F +SG +PN+ P + +GV + +G++E SN N + Sbjct: 171 GSLQIATFINPAGLEAKGENLFAETTSSG-APNV-SQPGLNGAGV-LNQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E+ MI TQ+ I + ML+ + Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTV 257 >gi|126175146|ref|YP_001051295.1| flagellar hook protein FlgE [Shewanella baltica OS155] gi|125998351|gb|ABN62426.1| flagellar basal body FlaE domain protein [Shewanella baltica OS155] Length = 460 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 26/153 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N I G Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANANTIGFKESRAEFADV---YANSIFSNAKTAVGGG 58 Query: 64 EYLSK-----EVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLV 115 S+ GS T LD A++G +F S G + TR G FKV + +V Sbjct: 59 VATSQVAQQFHQGSLQLTNNSLDMAIKGGGFFVTSSELGTLDHAFTRAGAFKVDSNNYMV 118 Query: 116 SASGKY----PV----------LDMASVPIQIP 134 ++G Y PV L A P+QIP Sbjct: 119 DSAGNYLQTFPVDKDGNSTSVSLTTAK-PVQIP 150 >gi|224417699|ref|ZP_03655705.1| flagellar basal body rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253827048|ref|ZP_04869933.1| flagellar distal rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253510454|gb|EES89113.1| flagellar distal rod protein FlgG [Helicobacter canadensis MIT 98-5491] Length = 263 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 46/235 (19%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 L + ++ ++N+SN +T G+R + +F+++ G+ ++ + + G Sbjct: 13 LGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETTLSPTGIEVGLGV 72 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 V G+F T LD A+ G+ +F +E P G I TRDG FK+ D+G++V++ Sbjct: 73 RPTSVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQ 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-----IATMGLYSV 163 G V + I IP N+G G E+++ G++ I GL+++ Sbjct: 133 GYLLVPN-----ITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVNFINPAGLHAL 187 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 +N ++ N P+ G+ +++GF+E SN + EM +I Sbjct: 188 G--------DNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLI 234 >gi|146295640|ref|YP_001179411.1| flagellar basal body rod protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409216|gb|ABP66220.1| flagellar basal body rod protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 257 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 123/257 (47%), Gaps = 34/257 (13%) Query: 10 AAQLALEQRL-STVADNMSNTDTVGF-RTI-------KVKFSEVVGAIKNDIDQKISFVA 60 A+ + L Q+L A+N++N T GF R I ++ ++ N ID I +++ Sbjct: 9 ASGMILNQKLMDLTANNIANVSTTGFKRDIAQVESFRRMMTHKIYDDSSNSIDNAIGYMS 68 Query: 61 SGKEYLSKEV-----GSFISTGTELDFALEGDAWFALES--PRG----IILTRDGRFKVT 109 G + +S+ V G +I T L+ A+ G +FA+E P+ + TR+G F + Sbjct: 69 LGAD-VSRIVSDFSQGLYIKTDEPLNLAIRGSGFFAVEKVDPQTGQAQVYYTRNGAFTLN 127 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 +G LV+ G + VL I + + +I + E+G I Q G+ + + L VD Sbjct: 128 SNGELVTLEG-FRVLGQNG-RIVLQNQGQI-RIDEQGNIYQDGRFVDRLRL--VDFQDKT 182 Query: 170 VRRENSGISPNIPPTPLED----LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + R+ I N+ + SG V +G+LE SN NS+ EM MI++ + + + Sbjct: 183 LLRK---IGNNLFEADAQSQQIAFSG-RVLQGYLEGSNVNSVQEMVNMINVLRAYEANQK 238 Query: 226 LIDENEKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 239 AFIAQDETLQKAVNEIA 255 >gi|237653581|ref|YP_002889895.1| flagellar basal body rod protein FlgG [Thauera sp. MZ1T] gi|237624828|gb|ACR01518.1| flagellar basal-body rod protein FlgG [Thauera sp. MZ1T] Length = 260 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 40/240 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + L +++N++N T GF+ + F +++ GA Q S Sbjct: 11 GLDAQ---QTSLDVISNNLANVSTNGFKRQRAIFEDLLYQTIRQPGAQSTQQTQISSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G + ++ E G+ TG LD A++G+ +F + P G TRDG F++ G+ Sbjct: 68 IGTGVKPVATERIFTQGTLQQTGGSLDVAVQGNGFFQVAMPDGTTAYTRDGAFQLDSQGN 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGLYSVDMSQ 167 +V+ASG Y + D I IP +G+ G +S Q G+ I + L + S Sbjct: 128 VVTASG-YTLAD----NINIPADALSITIGKDGTVSVLQAGQTAPVEIGAIQLATFINSG 182 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G F +SG++ P P + +GV + +G++E SN N E+ MI +TQ+ Sbjct: 183 GLQAAGENLFYETASSGVA--TPTQPGTNGAGV-LNQGYVEVSNVNVAEELVSMI-VTQR 238 >gi|315185553|gb|EFU19322.1| fagellar hook-basal body protein [Spirochaeta thermophila DSM 6578] Length = 269 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 48/274 (17%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF------- 58 +A+QL R+ +A+N++N D G++ I F E++ ND K+ + Sbjct: 1 MASQL---NRMDAIANNLANVDLTGYKRDTAIFKAFPELLIRRMNDKYFKVPWGSIDNTP 57 Query: 59 --------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 V + + Y E G T FALEG +F + +P+G TR+G F + Sbjct: 58 VVGKLGTGVETNEVYTVFEQGPLKETKDPFHFALEGQGFFTVLTPQGERYTRNGSFILGP 117 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK----------------- 153 +G LV+ G YPV+ + I K F V E G I Q + Sbjct: 118 EGLLVTKEG-YPVVGENGL---IHIKANNFVVDEDGRIFQNARFAEDPDRLVALEENEWD 173 Query: 154 ---VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMY 208 ++ + + +V + ++ +S E L V++GFLE SN N + Sbjct: 174 ETELVDRLKIVNVRRPRYLQKQGDSLWRTTRESGEAEILQDGRPKVRQGFLEGSNVNPVT 233 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 EM QMI + + + + I E + S+L + N A Sbjct: 234 EMVQMIEVNRAYEANQKTI-ETQDSLLGRLINEA 266 >gi|260774940|ref|ZP_05883841.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] gi|260609195|gb|EEX35353.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 118/260 (45%), Gaps = 48/260 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N TVG++ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I +R+G+F V D+G Sbjct: 68 LGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVNDEGV 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V++ YP+ I IP+ +G GE+S Q +V+ + +VD Sbjct: 128 VVTSGAGYPL----EPEIAIPEDAISITIGTDGEVSVRVRGQQDNQVVGQIA--TVD--- 178 Query: 168 GFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 FV G+ P N+ PT P E + G +++ LE SN N E+ MI Sbjct: 179 -FVNP--GGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 236 EAQRVYEMNSKVISAVDKMM 255 >gi|307293785|ref|ZP_07573629.1| flagellar basal-body rod protein FlgG [Sphingobium chlorophenolicum L-1] gi|306879936|gb|EFN11153.1| flagellar basal-body rod protein FlgG [Sphingobium chlorophenolicum L-1] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 39/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKN-DIDQKI----- 56 GL AQ ++ +A+N++N +T F+ + F ++V A N D + K Sbjct: 12 GLDAQ---NTKMRVIANNLANVNTTAFKRDRADFETLAYQQIVAAGANSDSENKFATGLN 68 Query: 57 --SFVA-SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 S VA G ++ + G+ TG LD A+EG +F ++ P G I TR G F T +G Sbjct: 69 LGSGVALQGTSKINAQ-GTLNQTGNTLDMAIEGSGYFQVQQPDGSIAYTRAGNFTTTAEG 127 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV--IATMGL 160 +V++ G P++ I +P+ +G G +S Q G+V + M Sbjct: 128 VVVTSDG-LPLIPQ----ITVPEGATSITIGNDGTVSATLQGQTEPTQLGQVELASFMNP 182 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR-GFLEDSNANSMYEMGQMIHLTQK 219 + + G + +E + + P + L G V R G+LE SN N + E+ MI + Sbjct: 183 GGLQSTGGNLLKETA--ASGTPQVGVAGLDGRGVVRSGYLETSNVNVVEELVDMIETQRA 240 Query: 220 F 220 + Sbjct: 241 Y 241 >gi|226950050|ref|YP_002805141.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] gi|226841546|gb|ACO84212.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] Length = 263 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 41/241 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KNDIDQKIS 57 GL AQ + +L ++++N++N +TVG++ V F E+V + +I Sbjct: 11 GLIAQ---QNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRPEIQTGTG 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 A+ + + G+ ++TG + D A++G +F + G R G F + +G LV Sbjct: 68 VKATNWIRDTHQQGALLTTGNKTDLAIDGQGFFRVIMADGDYAYERSGNFLIDRNGMLVD 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEIF-----------NVGEKGEISQK-----GKVIATMGL 160 +G LD + +Q P+ +I N+ E G IS + KV+ + + Sbjct: 128 ENGN--ALD---IQLQQPEGVQILNRIGGFDANNINIAEDGSISVRDTDGLNKVVGKINI 182 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDL--SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 Y+ + F+ + G + +P + + V++ +GFLE+SN ++ EM +MI +TQ Sbjct: 183 YNAVGADAFL---SIGRNLYLPRDGVNVFVNNDVSILQGFLENSNVDAGKEMTEMI-ITQ 238 Query: 219 K 219 + Sbjct: 239 R 239 >gi|224825166|ref|ZP_03698272.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] gi|224602837|gb|EEG09014.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] Length = 260 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 38/232 (16%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---------VASGKEYLS- 67 +L V++N++N++T GF+ F ++ +++ V +G ++ Sbjct: 18 QLDVVSNNLANSNTKGFKKGHAVFEDLYYQTLRQPGSQLTNGNSLPTGLQVGTGSTVVAT 77 Query: 68 ---KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 G+ ST LD A+ GD +F ++ P G I TR+G F+ ++G +V++SG + Sbjct: 78 ARIHSQGNLESTEQPLDLAINGDGFFRVQQPDGTIAYTRNGEFRRNENGDIVNSSGY--L 135 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVDMSQG 168 LD A I IP + E G + Q I GL S+ + Sbjct: 136 LDPA---INIPANATGITISEAGVVQYTQPNSTAPTTAGTIQLTTFINPQGLQSIGQNL- 191 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +++ + SG + P D G +V+ GFLEDSN N E+ MI + F Sbjct: 192 YLQTQASGDPQDGDPN--TDGRG-SVRSGFLEDSNVNVTEELVNMITAQRSF 240 >gi|146307867|ref|YP_001188332.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina ymp] gi|145576068|gb|ABP85600.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] Length = 261 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 28/159 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+T+++N++N T GF+ + +F +++ I+ Sbjct: 11 GLSAQ---DMNLTTISNNLANVATTGFKRDRAEFEDLLYQIRRQPGGQSSQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + + GS +T LD A+ G +F + P G + TRDG F + Sbjct: 68 LGTGVRVVGTQKIFTA---GSLQTTEQPLDMAINGRGFFQILQPDGTVSYTRDGSFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 DG +V++ G L+ A I +P + F VGE G +S Sbjct: 125 DGQIVTSQGF--ALEPA---IVLPNEVRTFTVGEDGTVS 158 >gi|126668559|ref|ZP_01739513.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] gi|126626964|gb|EAZ97607.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] Length = 250 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/284 (25%), Positives = 117/284 (41%), Gaps = 77/284 (27%) Query: 1 MQTSFNIGL--AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 M + IG+ A Q L QR A+N++N T GF K D Q S Sbjct: 1 MDKALYIGMSGAKQNMLAQRAH--ANNLANVTTTGF--------------KKDFAQARSM 44 Query: 59 VASGKEYLSKEV------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 G + ++ G+ + TG +LD A+EGD+W A+++ G + TR G Sbjct: 45 PVFGGHHPTRAYAMTERPGTDLSSGALMETGRKLDVAIEGDSWLAVQNNLGEEVFTRSGS 104 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG----LY 161 ++ +G L A+G+ VL P+ +P D + +G G +S ++ G L Sbjct: 105 LQIDVNGLLRLANGEM-VLGNGG-PVALPPFDNV-EIGADGTVS----IVPVGGPPDQLV 157 Query: 162 SVDM--------------SQGFVRRENSGISPNIPPTPLEDLSG-------VTVKRGFLE 200 VD GF+RR+ P + L G V GFLE Sbjct: 158 EVDRLKLVTPPTQALEKGPDGFIRRK-----------PDQALGGGEPADANARVSGGFLE 206 Query: 201 DSNANSMYEMGQMIHLTQKFN---SITTLIDENEKSMLEAIRNI 241 SN N++ EM + L++++ + + EN ++ ++N+ Sbjct: 207 SSNVNAVAEMISNLQLSRQYEMQVKVMSTAKENSEAAARLLQNL 250 >gi|114330361|ref|YP_746583.1| flagellar hook protein FlgE [Nitrosomonas eutropha C91] gi|114307375|gb|ABI58618.1| flagellar basal body FlaE domain protein [Nitrosomonas eutropha C91] Length = 419 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFVA 60 F GL+ A +L +N++N +TVGF+ + +FS+V +G KN I A Sbjct: 3 FQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFSDVFANSLGGGKNQIGIGTQVAA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +E+ G+ S+ LD A+ G+ +F + I TR+G+F + DG LV+A+ Sbjct: 63 IAQEFAQ---GNVTSSDNPLDVAITGNGFFRTNNNGTISYTRNGQFHLDKDGFLVNAN-S 118 Query: 121 YPVLDMAS 128 Y V A+ Sbjct: 119 YNVTGFAA 126 >gi|148380595|ref|YP_001255136.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 3502] gi|153933262|ref|YP_001384882.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. ATCC 19397] gi|153935902|ref|YP_001388351.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. Hall] gi|168180938|ref|ZP_02615602.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] gi|148290079|emb|CAL84198.1| putative flagellar basal-body rod protein [Clostridium botulinum A str. ATCC 3502] gi|152929306|gb|ABS34806.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 19397] gi|152931816|gb|ABS37315.1| flagellar basal body rod protein [Clostridium botulinum A str. Hall] gi|182668229|gb|EDT80208.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] Length = 263 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 41/241 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KNDIDQKIS 57 GL AQ + +L ++++N++N +TVG++ V F E+V + +I Sbjct: 11 GLIAQ---QNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRPEIQTGTG 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 A+ + + G+ ++TG + D A++G +F + G R G F + +G LV Sbjct: 68 VKATNWIRDTHQQGALLTTGNKTDLAIDGQGFFRVIMADGDYAYERSGNFLIDRNGMLVD 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEIF-----------NVGEKGEISQK-----GKVIATMGL 160 +G LD + +Q P+ +I N+ E G IS + KV+ + + Sbjct: 128 ENGN--ALD---IQLQQPEGMQILNRIGGFDANNINIAEDGSISVRDTDGLNKVVGKINI 182 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDL--SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 Y+ + F+ + G + +P + + V++ +GFLE+SN ++ EM +MI +TQ Sbjct: 183 YNAVGADAFL---SIGRNLYLPRDGVNVFVNNDVSILQGFLENSNVDAGKEMTEMI-ITQ 238 Query: 219 K 219 + Sbjct: 239 R 239 >gi|219684180|ref|ZP_03539124.1| flagellar basal-body rod protein FlgG [Borrelia garinii PBr] gi|219672169|gb|EED29222.1| flagellar basal-body rod protein FlgG [Borrelia garinii PBr] Length = 265 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 117/263 (44%), Gaps = 40/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILMPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATM 158 LV++ G Y VL P + Q + E+G +S K + + Sbjct: 128 LVTSQG-YKVLPNIFFPEEYIQNS--ITISEQGIVSVKTDNSNEPIELGQIEISRFVNPA 184 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + + +E +G I P + G+ +++G LE SN + EM MI + Q Sbjct: 185 GLSAIGSN---LFKETAGSGQEITGIPGSEGMGI-LRQGILEMSNVSIAEEMVTMI-VAQ 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + + +ML N+ Sbjct: 240 RAYEINSKAIQTSDNMLGIANNL 262 >gi|222100100|ref|YP_002534668.1| Flagellar basal-body rod protein FlgF [Thermotoga neapolitana DSM 4359] gi|221572490|gb|ACM23302.1| Flagellar basal-body rod protein FlgF [Thermotoga neapolitana DSM 4359] Length = 252 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 26/218 (11%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDIDQKISFVASGK-EY--LSKE 69 +L +A++++N DT G++ + F E+ + I++++ V G EY + E Sbjct: 21 KLDRIANDLANVDTAGYKQDREAFRAYLRREIFRQEPDPIEKRVEKVPIGPLEYAVVLDE 80 Query: 70 VGSFISTG------TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 V S +S G A++G+ +F +E TR+G F+V G +V+ G Y + Sbjct: 81 VRSDLSQGPLEETKVPYHLAIDGEGFFRIEFNGQEYFTRNGEFEVGSGGYIVTNYGGY-L 139 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 LD I+ F V +G + + G VI +G+Y+V+ Q F +G + Sbjct: 140 LDENGERIEYFDG---FTVDGEGYVRDENGNVITRIGVYTVENPQKFGNTLFTGEN---- 192 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P+P E+ + +G++E SN N++ M MI + + Sbjct: 193 PSPTENFR---ILQGYVEKSNVNALKAMVDMISAMRHY 227 >gi|323492336|ref|ZP_08097489.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] gi|323313383|gb|EGA66494.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] Length = 261 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ N++ + Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNELPSGVQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V G+ +T + D A+ G +F +E+ G I+ TR+G+F V +G Sbjct: 68 LGSGVRVVGTQKVFTQGNTQNTSQQYDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATM 158 +V++ G P+ IQIP +VG G ++ Q G++ I Sbjct: 128 MVNSQG-LPL----EPQIQIPDNALSLSVGVDGTVTATTVDSSTPEQLGQITLAKFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL +V G + RE T ED G+ +K+G LE SN + EM MI + Sbjct: 183 GLEAVG---GNLFRETEASGQADELTAGEDGVGI-IKQGALEGSNVQVVEEMVDMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|237750021|ref|ZP_04580501.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] gi|229374432|gb|EEO24823.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] Length = 262 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 45/273 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L + ++ T ++N++N +TVGF+ + +F+++ Q + F Sbjct: 1 MMRSLYTATTGMLGQQLQIDTTSNNIANVNTVGFKRQRAEFNDL-------FYQTLQFAG 53 Query: 61 SGKEYLSK-----EVGSFISTG-------------TE--LDFALEGDAWFALESPRG-II 99 + + EVG + TG TE LD A+ G +F ++ P G I Sbjct: 54 TQTSETTLTPTGIEVGVGVRTGAINRIYSQGSPKETENPLDVAIMGKGFFPIQLPDGNIA 113 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGK 153 TR G FK+ D G++V++ G Y V +VP P+ I N+G G +S + + Sbjct: 114 YTRSGNFKLDDQGNIVTSEG-YLVQPQITVP---PEAQSI-NIGADGTVSVTLGNNGQAE 168 Query: 154 VIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMY 208 V+ + L + G +N ++ N P+E ++G ++ GFLE SN + Sbjct: 169 VLGQIQLVNFVNPAGLHGLGDNLYMNTNASGEPIEGIAGQDGLGQIRAGFLELSNVRLVS 228 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + + I + SML+ + + Sbjct: 229 EMTDLITGQRAYEANSKSI-QTADSMLQTVNGL 260 >gi|205375363|ref|ZP_03228153.1| flagellar hook-basal body complex protein [Bacillus coahuilensis m4-4] Length = 279 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 115/259 (44%), Gaps = 40/259 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M N+ L+Q L ++ N++N DT G++ +FSE++ KN ++ Sbjct: 1 MNRIMNVATNTMAQLQQHLDVISHNVANVDTNGYKAQNARFSEMLVQQFDNQKNPANEIG 60 Query: 57 SFVASGKEY----------LSKEVGSFISTGTELDFALEGDA-WFALESPRG----IILT 101 +G ++ G+ STG LDF L+ +F + + G + + Sbjct: 61 RLTPNGLRLGVGAGIGQIQMNTSQGALQSTGRSLDFILQNQTHYFKVLNQSGGQSEVNYS 120 Query: 102 RDGRFKVT---DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI 155 R G F ++ DD ++++ + P+L+ PI IP F + G + + +G+ Sbjct: 121 RSGAFYLSPLNDDTAMLTDANGNPILNSDDQPITIPGDATSFYPDQNGVLVVETPRGQER 180 Query: 156 ATMGLYSVDMSQGFVRRENS---GISPNI------PPTPLEDLSG-----VTVKRGFLED 201 +G+ S+ Q F+ + G+ N T L DL+G ++VK+GF+E Sbjct: 181 IELGVVSIQKPQ-FLESKGGNLVGLPTNFNQLDVDANTILTDLNGANRAEISVKQGFIEK 239 Query: 202 SNANSMYEMGQMIHLTQKF 220 SN + E+ MI++ + + Sbjct: 240 SNVDLSKELTDMINVQRSY 258 >gi|242309754|ref|ZP_04808909.1| flagellar basal body rod protein FlgG [Helicobacter pullorum MIT 98-5489] gi|239523755|gb|EEQ63621.1| flagellar basal body rod protein FlgG [Helicobacter pullorum MIT 98-5489] Length = 263 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 46/235 (19%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 L + ++ ++N+SN +T G+R + +F+++ G+ ++ + + G Sbjct: 13 LGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETTLSPTGIEVGLGV 72 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 V G+F T LD A+ G+ +F +E P G I TRDG FK+ D+G++V++ Sbjct: 73 RPTSVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQ 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-----IATMGLYSV 163 G V + I IP N+G G E+++ G++ I GL+++ Sbjct: 133 GYLLVPN-----ITIPDDATQVNIGTDGTVTVVQGNETEVNELGQIETVNFINPAGLHAL 187 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 +N ++ N P+ G+ +++GF+E SN + EM +I Sbjct: 188 G--------DNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLI 234 >gi|297616912|ref|YP_003702071.1| flagellar basal-body rod protein FlgG [Syntrophothermus lipocalidus DSM 12680] gi|297144749|gb|ADI01506.1| flagellar basal-body rod protein FlgG [Syntrophothermus lipocalidus DSM 12680] Length = 261 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 36/256 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASG---KE 64 A + + +A N++N +T G++ +V+F +++ + ND + S + G K Sbjct: 13 FAQQLNIDNIAHNIANVNTTGYKKSRVEFQDLIYQMLRRPVANDTTVQPSGLWVGLGVKP 72 Query: 65 YLSKEV---GSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASG 119 ++ + G+ T LD A++G A+F ++SP + TRDG FK+ +G+LV+ G Sbjct: 73 SATQTIFSQGNLTPTDNPLDVAIQGQAFFRVQSPTNEEYLYTRDGSFKLDSEGNLVTTDG 132 Query: 120 KYPV---------LDMASVP-----IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 Y V D+ P ++P +DE G+ + K GL + Sbjct: 133 YYVVGVDTIDPEGYDVTIAPDGTVTYKMPGQDEPVEAGQ----VELAKFTNPAGLEKIG- 187 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 G + R + I P D + V++ G+LE +N + EM +I Q+ I + Sbjct: 188 --GNLYRPTASSGEAIDWDPEADTT-VSLHAGYLEAANIQIVEEMVNLI-TAQRAYEINS 243 Query: 226 LIDENEKSMLEAIRNI 241 + ++ ML N+ Sbjct: 244 KVIQSADEMLGMAANL 259 >gi|167576662|ref|ZP_02369536.1| flagellar hook protein flgE [Burkholderia thailandensis TXDOH] Length = 395 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 6/113 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L+T++ N++N++T GF+ + F+ +V + +++ S Sbjct: 2 SFNIALSGINAINSQLNTISHNIANSNTYGFKAGRANFATMVAGTQ----ANGTYIGSTT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 + + G F+ TG LD A++G+ +F + G + TR G FK DG +V Sbjct: 58 QSVGTR-GGFLPTGRALDGAIDGNGFFVTKDSDGSTLFTRVGYFKRDADGYIV 109 >gi|163783988|ref|ZP_02178953.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] gi|159880748|gb|EDP74287.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] Length = 327 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 71/131 (54%), Gaps = 12/131 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKI 56 M SF G A A ++ LS ++DN++N +T+GF+ + F +++ + N+ + + Sbjct: 1 MIQSFYTGNAGLNANQKWLSVISDNIANVNTIGFKAERANFEDLIASSITSFANNAPKNM 60 Query: 57 -----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 SF+ S + S+ G+ +T D AL+G+ +F ++ +G+ TR G+F+ Sbjct: 61 EIGGGSFIGSTTKDFSQ--GALKNTNIATDLALDGEGFFMVQDKQGVTYYTRAGQFRTDA 118 Query: 111 DGSLVSASGKY 121 +G L++ +G Y Sbjct: 119 NGDLINLNGMY 129 >gi|238785495|ref|ZP_04629478.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] gi|238713597|gb|EEQ05626.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] Length = 260 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLAKTDNTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+ASG +PV ++P +D I +V +G+ + Q G++ T G Sbjct: 125 NGQLVTASG-FPVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L S M + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LES--MGENLYQETASSGAPN-DTTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLTQL 260 >gi|167909129|ref|ZP_02496220.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 112] Length = 262 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 114/275 (41%), Gaps = 47/275 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y GS TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GSLQQTGNSKDVAINGPGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VI 155 RDG F+ G LV++SG Y V+ I IPQ +G G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVIPA----ITIPQNANSLTIGSDGVVSVTQPGSNNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 + + + G F +SG +PN+ L T+K+G++E SN N + Sbjct: 171 GALQIATFINPAGLDAKGENLFAETTSSG-APNVSQPGLNGAG--TLKQGYVESSNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E+ MI TQ+ I + ML+ + ++ Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMS 261 >gi|126176154|ref|YP_001052303.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|304412506|ref|ZP_07394112.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|307307165|ref|ZP_07586903.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] gi|125999359|gb|ABN63434.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|304349148|gb|EFM13560.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|306910404|gb|EFN40835.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] Length = 261 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 115/246 (46%), Gaps = 32/246 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------N 50 MQ++ + A + +++ +A+N++N +T GF+ +V F+++ ++ N Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + A + ++++ G +T +LD A+EG +F +E P G + TRDG+F Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIEGHGFFQVEEPNGDLAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK--GKV----IATMG 159 + +G +V++ G + VP I IP+ + G ++ K G+ + + Sbjct: 121 YRSSEGMMVTSQG------LPLVPNIVIPEDALTVTIANDGVVTAKMAGEAEPQDLGQIT 174 Query: 160 LYSVDMSQGF-VRRENSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L + G R +N +E ++G +++G LE +N N + EM +MI Sbjct: 175 LVNFTNPAGLEARGDNLYRETAASGVAVEGVAGDQALGALRQGALEGANVNVVEEMVEMI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 STQRAY 240 >gi|312882658|ref|ZP_07742395.1| flagellar basal body rod protein FlgF [Vibrio caribbenthicus ATCC BAA-2122] gi|309369619|gb|EFP97134.1| flagellar basal body rod protein FlgF [Vibrio caribbenthicus ATCC BAA-2122] Length = 248 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 40/226 (17%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L A+N++N T GFR D++Q S A G+ ++ Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLEQARSMQAYGEGLPTRVFSMTERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 GS I+TG +LD +EG W ++ G LTR+G K+ +G L+ SG+ V Sbjct: 63 GQNFRQGSVITTGRDLDVTIEGLGWISVLDKTGKEGLTRNGNLKIDSNGLLL--SGENLV 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS--QKG------KVIATMGLYSVDMSQGFVRRENS 175 L S PI +P +G G IS +G +++ + L + D F ++ + Sbjct: 121 LGEGSDPITLPIPLSKVEIGSDGTISVVPQGAPADAIEIVDRIKLTNTDNRSLF--KDIN 178 Query: 176 GISPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ + P ++ G V + +G +E SN +++ EM +I L ++F Sbjct: 179 GLFRSKDPNAQYEIDGNVKLLKGAIEGSNVSAIGEMTSLIDLQRQF 224 >gi|307823532|ref|ZP_07653761.1| flagellar basal-body rod protein FlgF [Methylobacter tundripaludum SV96] gi|307735517|gb|EFO06365.1| flagellar basal-body rod protein FlgF [Methylobacter tundripaludum SV96] Length = 246 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 40/231 (17%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EV 70 A+N++NT T GF K+D++Q S SG + ++ Sbjct: 23 ANNLANTQTSGF--------------KSDLEQFRSRPVSGAGFPTRVYAMNEKPGVDLST 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ +TG +LD A+ G+ + A++ G TR G +VT +G L + +G VL Sbjct: 69 GAMQTTGGDLDVAINGEGYLAVQGADGKEAYTRAGDLRVTPEGFLQTGAG-LKVLGQDG- 126 Query: 130 PIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQ---GFVRRENSGISPNIP 182 PI IP E ++G G IS G + + + M + G + + N G+ Sbjct: 127 PINIP-PSEKLSIGSDGTISIIPLGSGNATTQVEIGRIKMVKLEAGNLEKSNDGLLHAKD 185 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 P+ + V + +G LE SN N++ M MI L + F T ++ DEN Sbjct: 186 GKPVVANADVKLAQGVLEGSNVNAISAMVDMIELARNFELQTKVMKSFDEN 236 >gi|241766920|ref|ZP_04764726.1| flagellar basal body FlaE domain protein [Acidovorax delafieldii 2AN] gi|241362624|gb|EER58472.1| flagellar basal body FlaE domain protein [Acidovorax delafieldii 2AN] Length = 425 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 21/194 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A + L + N++N +T GF+ + +F+E+V + + + Sbjct: 2 SFQQGLSGLNASSKNLDVIGHNIANANTTGFKASRAEFAEMVASAIGSAGGNNAGIGVET 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++++ G+ TG LD A+ G+ +F L+ P G TR G FK+ G++V+ Sbjct: 62 ANVAQQFTQGNLTITGNSLDVAINGNGFFTLQQPDGSPAYTRAGNFKLDKTGNMVTNDNA 121 Query: 121 ----YPV-----LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 YPV L + P+ + +F E Q K++A L ++ Sbjct: 122 KVMGYPVDPLTGLRSGTAPVPM-----VFPTAEPIPAKQTTKIMAGFNLD----ARAPDA 172 Query: 172 RENSGISPNIPPTP 185 N +P IP TP Sbjct: 173 AGNPAATPPIPATP 186 >gi|239995125|ref|ZP_04715649.1| flagellar hook protein FlgE [Alteromonas macleodii ATCC 27126] Length = 461 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 27/138 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L A+N++N +TVGF+ + +F +V A S ++ GK Sbjct: 2 SFNIALSGVSAAQKDLDVTANNIANVNTVGFKESRAEFGDVYAA---------SLLSGGK 52 Query: 64 E-----YLSKEV------GSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVT 109 L++EV GS T T LD A+ G+ +FA + R TR G+FK+ Sbjct: 53 TKVGDGVLTQEVAQQFSQGSLQFTNTSLDLAITGNGFFATVPEITSRDFSFTRAGQFKLD 112 Query: 110 DDGSLVSASGK----YPV 123 D +V+++G +PV Sbjct: 113 SDNFVVNSNGDNLLGFPV 130 >gi|119775450|ref|YP_928190.1| flagellar hook protein FlgE [Shewanella amazonensis SB2B] gi|119767950|gb|ABM00521.1| flagellar hook protein FlgE [Shewanella amazonensis SB2B] Length = 453 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 18/149 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T GF+ + +F++V A N Q V + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYAASIFSNSKTQVGGGVTT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWF---ALESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F A S R TR G FKV + LV ++ Sbjct: 62 TQVAQQFHQGSLQFTSNALDLAISGGGFFVTSADPSARDYSFTRAGAFKVDSNNYLVDSA 121 Query: 119 GK----YPVLDMA---------SVPIQIP 134 G +PV + P+QIP Sbjct: 122 GNFLQTFPVDKFGNSTSVSLTTTRPVQIP 150 >gi|313141242|ref|ZP_07803435.1| flagellar basal-body rod protein distal rod protein [Helicobacter canadensis MIT 98-5491] gi|313130273|gb|EFR47890.1| flagellar basal-body rod protein distal rod protein [Helicobacter canadensis MIT 98-5491] Length = 262 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 46/235 (19%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 L + ++ ++N+SN +T G+R + +F+++ G+ ++ + + G Sbjct: 12 LGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETTLSPTGIEVGLGV 71 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 V G+F T LD A+ G+ +F +E P G I TRDG FK+ D+G++V++ Sbjct: 72 RPTSVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFKLDDEGNVVNSQ 131 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-----IATMGLYSV 163 G V + I IP N+G G E+++ G++ I GL+++ Sbjct: 132 GYLLVPN-----ITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETVNFINPAGLHAL 186 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 +N ++ N P+ G+ +++GF+E SN + EM +I Sbjct: 187 G--------DNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLI 233 >gi|320107042|ref|YP_004182632.1| flagellar basal-body rod protein FlgG [Terriglobus saanensis SP1PR4] gi|319925563|gb|ADV82638.1| flagellar basal-body rod protein FlgG [Terriglobus saanensis SP1PR4] Length = 262 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 33/245 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-V 59 G++AQ A L T+A+N++N+ T GFR +++F ++V G+ + + Sbjct: 11 GMSAQQA---NLDTIANNLANSATSGFRRRRLQFEDMVYQNLVTPGSAETTQTTSAGLQI 67 Query: 60 ASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSL 114 G + ++ EV G F TG + D A++G +F + P G + TR G F G L Sbjct: 68 GLGTKSVASEVIMTQGDFNQTGNQYDLAIQGQGFFQVIRPDGTLAYTRAGSFPPNGQGQL 127 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQG 168 + +G D+ + I IP + G + S G + T+ L + G Sbjct: 128 ATVNG-----DLLTPAISIPANATSVTISAYGVVTAAVPGSTTGTQLGTIQLATFPNPGG 182 Query: 169 FVRRENSGISPNIPP-TPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + P + + DL G T+++ +LE+SN + + E QM+ + + S Sbjct: 183 LNSLGGNLFQPTLASGNAITDLPGGNSGMGTLQQTYLENSNVDVVEEFVQMVMAQRAYES 242 Query: 223 ITTLI 227 + +I Sbjct: 243 NSKVI 247 >gi|34558103|ref|NP_907918.1| flagellar basal-body rod protein FlgG [Wolinella succinogenes DSM 1740] gi|34483821|emb|CAE10818.1| FLAGELLAR BASAL-BODY ROD PROTEIN FLGG [Wolinella succinogenes] Length = 277 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 55/258 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV--------------------K 40 MQ+ + + RL +++N++N +T GF+ V + Sbjct: 1 MQSGYYSSTGGIVTQFHRLDMISNNLANANTTGFKRDDVVIGDFLRLYEQQKEPLPLEDQ 60 Query: 41 FSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGII 99 E + +D+ S V +EY + +G + DFAL+ + A+F +E+P GI Sbjct: 61 TREAAKFLNRAMDRVPSIV---EEYTDRSIGGITPSENRFDFALQSENAYFMIETPEGIR 117 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV--GEKGEISQKGKV--- 154 TRDG F + +G LV+ G A +P + Q + ++ G E + G + Sbjct: 118 YTRDGSFTLNSEGRLVTKEG------FAVLPREFVQSRQYIDIPDGVVIEADRNGNLYSR 171 Query: 155 ---------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--------SGVTVKRG 197 I +G ++ + E +G N+ P E + SG V+ G Sbjct: 172 TLNNDELGDIIPLGNIAIASFENPKYLEKTG--KNLYEYPQERMGERNLATNSGALVQ-G 228 Query: 198 FLEDSNANSMYEMGQMIH 215 +LE SN N+++EM +I Sbjct: 229 YLEKSNVNAVWEMTGLIE 246 >gi|121534936|ref|ZP_01666755.1| flagellar basal-body rod protein FlgG [Thermosinus carboxydivorans Nor1] gi|121306535|gb|EAX47458.1| flagellar basal-body rod protein FlgG [Thermosinus carboxydivorans Nor1] Length = 262 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 48/266 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKN---------D 51 G+ AQ A + +++N++N +T GF+ + F +++ GA Sbjct: 11 GMVAQQA---NVDVISNNLANVNTTGFKKSRTDFQDLMYQTIRQAGAATGADTQLPTGIQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 I + VA+ K Y G+F TG LD A+EGD +F + P G + TRDG FK Sbjct: 68 IGHGVRQVATQKIYTQ---GNFQQTGNPLDLAIEGDGFFQITLPDGTLAYTRDGAFKKDA 124 Query: 111 DGSLVSASGKYPVLDMASVP---------------IQIPQKDEIFNVGEKGEISQKGKVI 155 G +V++ G YP+ +P +IP + + ++G+ Q + I Sbjct: 125 QGRIVTSEG-YPLEPQIIIPENATELLISADGRVTAKIPGQTDPQDLGQ----IQIVRFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL S+ + + +E + + P D +G V++ +LE SN + EM MI Sbjct: 180 NPAGLDSIGRN---LLKETAASGAPVVLNPGTDGAGTLVQQ-YLEMSNVQVVEEMVNMI- 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + Q+ I ML + N+ Sbjct: 235 VAQRAYEINAKAITTADDMLGQVANL 260 >gi|170694393|ref|ZP_02885547.1| flagellar basal-body rod protein FlgF [Burkholderia graminis C4D1M] gi|170140816|gb|EDT08990.1| flagellar basal-body rod protein FlgF [Burkholderia graminis C4D1M] Length = 252 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 11/142 (7%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSK 68 ALEQ+ + VA+N++N T GFR F V G+ ND + +FV S Sbjct: 15 ALEQQ-AIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR-TFVLSSTPGADY 72 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A+EG W A+++ G TR G V +G LV+A+ + VL Sbjct: 73 TPGPIQQTGNPLDVAIEGPGWLAVQTADGNEAYTRAGNLHVDQNGQLVNATNQV-VLGNG 131 Query: 128 SVPIQIPQKDEIFNVGEKGEIS 149 PI +P +I +G G ++ Sbjct: 132 G-PISVPPGAQI-TIGHDGTVT 151 >gi|251778946|ref|ZP_04821866.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083261|gb|EES49151.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 256 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 18/130 (13%) Query: 5 FNIGLAAQL---ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 FNI AQ A +++L +++++ NT T G+++ V+FS++ + +D+K + Sbjct: 2 FNIFANAQSGMSAYQEKLDYLSNDLVNTSTTGYKSTDVQFSDL---LTESLDRKGTPLVN 58 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 V G +Y G+ ++TG + D A++G +FA G I TRDG K+ Sbjct: 59 KDAINGTGVKLGMDYRKDTQGNLLTTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKID 118 Query: 110 DDGSLVSASG 119 +G+LV A G Sbjct: 119 SNGTLVDARG 128 >gi|167034944|ref|YP_001670175.1| flagellar hook protein FlgE [Pseudomonas putida GB-1] gi|166861432|gb|ABY99839.1| flagellar basal body FlaE domain protein [Pseudomonas putida GB-1] Length = 440 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 SFNIGL+ A + L+ +N++N T GF++ + +F++ A KN + + Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKNTVGTGV 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 A + + G+ TG LD A++G+ +F + I TR G F DG +V+ Sbjct: 62 KTAAVSQLFTP---GNINGTGQALDMAIDGNGFFVMSDNGSKIYTRAGAFYSDKDGYVVN 118 Query: 117 ASG 119 ASG Sbjct: 119 ASG 121 >gi|312962294|ref|ZP_07776785.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6] gi|311283221|gb|EFQ61811.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6] Length = 207 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 28/159 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + L+T+++N++N T GF+ + +F +++ IK Sbjct: 11 GLSAQ---DTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKKQPGAQSTQDSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + G+ TG LD A+ G +F + P G TRDG F + Sbjct: 68 LGTGVQIVGTQKNF---SAGNLQQTGQPLDMAINGRGFFQILQPDGTTSYTRDGTFHLDS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +G +V+A+G L+ A + +P + F VG G +S Sbjct: 125 NGQIVTANGFS--LEPAVI---VPADAKTFTVGNDGTVS 158 >gi|254251193|ref|ZP_04944511.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] gi|124893802|gb|EAY67682.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] Length = 262 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 115/275 (41%), Gaps = 47/275 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++NT T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y G TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GGLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VI 155 RDG F+ G LV++SG Y +L I +PQ +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQILPA----ITVPQNATSLTIGKDGVVSVTQPGSNNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 ++ + + G F +SG +PN+ L T+ +G++E SN N + Sbjct: 171 GSLQIATFINPAGLEAKGENLFAETTSSG-APNVSQPGLNGAG--TLNQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E+ MI TQ+ I + ML+ + ++ Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMS 261 >gi|103488389|ref|YP_617950.1| flagellar basal body rod protein FlgG [Sphingopyxis alaskensis RB2256] gi|98978466|gb|ABF54617.1| Flagellar basal-body rod FlgG [Sphingopyxis alaskensis RB2256] Length = 261 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 31/245 (12%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEV-------VGA-------IKNDIDQKISFVASGK 63 R+ +A+N++N +T GF+ + F + GA ++ +G Sbjct: 19 RMQVIANNLANVNTTGFKRDRASFETLSYQLMTQAGAPSTAENRYATGLNLGTGVALNGT 78 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 + + G+F +TG LD A++G +F +E P G I TR G F DG++V+ GK P Sbjct: 79 ARIDTQ-GTFQTTGNGLDVAIDGAGYFQVELPDGRIGYTRAGNFGRAPDGTIVTPDGK-P 136 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI- 181 + + IQIP+ ++G G +S + L +++++ I N+ Sbjct: 137 L----TPAIQIPEDAGNVSIGLDGTVSATAADGTALELGRIEIARFSNPAGLQAIGGNML 192 Query: 182 -----PPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 PL +G T++ G LE SN N + E+ MI + + + +I ++ Sbjct: 193 VETQASGAPLVGGAGEEGRGTLRGGMLEGSNVNVVEELVDMIETQRAYEVNSKMISATDE 252 Query: 233 SMLEA 237 M A Sbjct: 253 MMKNA 257 >gi|312136040|ref|YP_004003378.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] gi|311776091|gb|ADQ05578.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] Length = 255 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 115/251 (45%), Gaps = 24/251 (9%) Query: 10 AAQLALEQRLSTV-ADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------DQKISFVAS 61 A+ + L Q+L + A+N++N T GF+ + + I D I +++ Sbjct: 9 ASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKTSSPDNAIGYMSL 68 Query: 62 GKEYLSKEV-----GSFISTGTELDFALEGDAWFALESP-----RGIILTRDGRFKVTDD 111 G + +S+ V G +I T L+ A+ G+ +F +E P + ++ TR+G F + Sbjct: 69 GSD-VSRIVSDFSQGLYIKTDEPLNLAIRGNGFFTVEVPESEGGQQVLYTRNGAFTLNSR 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G LV+ G Y + + +Q + + ++G I Q G+ + + + Q + Sbjct: 128 GELVTIDGFYVLGQNGRIVLQNHGQ---IRIDDQGNIYQNGRFVDRLRIVDFQDKQLLRK 184 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N+ + + SG + +G+LE SN NS+ EM MI++ + + + + Sbjct: 185 VGNNLFEADAGAQQIP-FSG-KILQGYLEGSNVNSVQEMVNMINVLRAYEANQKAFTIQD 242 Query: 232 KSMLEAIRNIA 242 +++ +AI IA Sbjct: 243 ETLQKAISEIA 253 >gi|169831888|ref|YP_001717870.1| flagellar basal body rod protein [Candidatus Desulforudis audaxviator MP104C] gi|169638732|gb|ACA60238.1| flagellar basal body rod protein [Candidatus Desulforudis audaxviator MP104C] Length = 246 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 16/232 (6%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK-----EYLS 67 LA + RL VA N++N +T GFR F+ + +++++ + + L Sbjct: 13 LAGQTRLDAVAHNIANVNTTGFRRQVPVFAPYLQTAVGRHEKRVTPIGTTSLGTVPTALV 72 Query: 68 KEV--GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 ++ G + TG +D ALEG+ +F +E + TR G FKV G LV+ +G PVL Sbjct: 73 TDLTGGPVVQTGRTMDLALEGEGFFTVEREGQQLYTRAGSFKVDASGILVTRAGD-PVLG 131 Query: 126 MASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 P+++ F V G + S G+ + + L ++ + +VR + + Sbjct: 132 ERG-PLKVGHDG--FTVSADGRVFSSTGEELDRLRLTALPGRETWVRTPDGYLMTGEATA 188 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P + V +G+LE SN + E+ ++ L + + + + +++E Sbjct: 189 PAIN---TRVHQGYLEGSNVHLAVELVDLL-LASRLYAANQRVARTQDTLVE 236 >gi|86356312|ref|YP_468204.1| flagellar basal body rod protein FlgG [Rhizobium etli CFN 42] gi|86280414|gb|ABC89477.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 262 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 112/250 (44%), Gaps = 44/250 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI---------SF 58 A + L +A+N++N +T GF+ + +F++++ + N +Q + Sbjct: 13 AQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQAVVPEGANIGLGV 72 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSA 117 S L + G TG +LD AL G +F ++S G L TR G F D G LV+ Sbjct: 73 QTSAVRNLHLQ-GELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTI 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRRENS 175 G Y VL I IPQ + GE+S K G+ T+ L + ++ FV + Sbjct: 132 DG-YEVLP----GITIPQGSTELTISRSGEVSAKLPGQTDPTV-LGQLTLAD-FVNE--A 182 Query: 176 GISP---NI---PPTPLEDLSG-------VTVKRGFLEDSNANSMYEMGQMIHLTQKF-- 220 G+ P N+ P E + G +K+G+LE SN + + E+ ++I + + Sbjct: 183 GLQPIGDNLFQETPASGEAVVGNPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYEM 242 Query: 221 -NSITTLIDE 229 + + T DE Sbjct: 243 NSKVITTADE 252 >gi|330502736|ref|YP_004379605.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina NK-01] gi|328917022|gb|AEB57853.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina NK-01] Length = 261 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------- 58 GL+AQ + L+T+++N++N T GF+ + +F +++ I+ + S Sbjct: 11 GLSAQ---DMNLTTISNNLANVATTGFKRDRAEFEDLLYQIRRQPGGQTSQDSELPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G + + GS +T LD A+ G +F + P G + TRDG F + DG Sbjct: 68 LGTGVRVVGTQKIFTAGSLQTTEQPLDLAVNGRGFFQILQPDGTVSYTRDGSFHLNSDGQ 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMS 166 +V++ G A P I +P + F VGE G +S + +VI + L Sbjct: 128 IVTSQG------FALEPAIVLPAEVRTFTVGEDGTVSVTTAGNAQAQVIGNIQLADFVNP 181 Query: 167 QG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G F+ +SG +P + L L T + LE+SN + + E+ MI + Sbjct: 182 AGLEAIGNNLFLETGSSG-APQVGNPGLNGLG--TTLQNTLENSNVSVVEELVNMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|120598232|ref|YP_962806.1| flagellar hook protein FlgE [Shewanella sp. W3-18-1] gi|120558325|gb|ABM24252.1| flagellar basal body FlaE domain protein [Shewanella sp. W3-18-1] Length = 453 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +TVGF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTVGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV +V +S Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTSSELGTLDFSYTRAGAFKVDASNYMVDSS 121 Query: 119 GKY----PV----------LDMASVPIQIP 134 G Y PV L A P+QIP Sbjct: 122 GNYLQTFPVDKEGNSTSVSLTTAK-PVQIP 150 >gi|317177169|dbj|BAJ54958.1| flagellar basal-body rod protein [Helicobacter pylori F16] Length = 269 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYHGEGVHQVSDSSALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|94969950|ref|YP_591998.1| flagellar basal-body rod FlgG [Candidatus Koribacter versatilis Ellin345] gi|94552000|gb|ABF41924.1| Flagellar basal-body rod FlgG [Candidatus Koribacter versatilis Ellin345] Length = 263 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 117/265 (44%), Gaps = 43/265 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVASG-- 62 G+ AQ + L +A+N+SN T GFR +++F +++ + + + VASG Sbjct: 11 GMTAQ---QLNLDNIANNLSNASTAGFRARRLQFQDLMYQNMVVPGSAATQQTTVASGLQ 67 Query: 63 ---------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 E L + G F STG LD A++G +F + P G TR G+F + G Sbjct: 68 VGLGTRPTASETLQTQ-GEFESTGNPLDIAIQGQGFFQVLLPDGTTGYTRSGQFHLDAQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIATM------------ 158 ++V++ G + + IP + ++G G ++Q G+ A Sbjct: 127 NVVTSDG-----NQLQPSLTIPADAQTISIGADGTVTVTQPGQTQAQQVGSIQVASFANP 181 Query: 159 -GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL S+ + F+ SG P I TP T+++G LE +N + + E QMI L Sbjct: 182 GGLNSIGKNL-FLATTASG-DPTI-GTPGGAEGAGTLQQGVLEQANVSVVDEFIQMI-LA 237 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 Q+ + + ML+ + +A Sbjct: 238 QRSYEANSKVVTAANEMLQNLNTMA 262 >gi|94500243|ref|ZP_01306776.1| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65] gi|94427542|gb|EAT12519.1| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65] Length = 261 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 33/238 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKISFVASGKE 64 GL AQ + L+T+++N++N T GF+ + F +++ I+ + + S + SG + Sbjct: 11 GLNAQ---DHGLTTISNNLANVSTTGFKKDRAVFEDLIYQIQRQPGALSSQDSRLPSGLQ 67 Query: 65 YLS----------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + GS T LD A+ G +F + P G I TRDG F + +G+ Sbjct: 68 LGTGVKVAGTQKIHTTGSLEETSQPLDLAINGRGFFQIALPDGQIAYTRDGTFHMDAEGN 127 Query: 114 LVSASGKYPVLDMASVPIQIP----QKDEIFNVGEKGEISQK--GKV-----IATMGLYS 162 +V++ G Y + ++P Q +D I +V + G+ + + G++ I GL + Sbjct: 128 IVNSQG-YLLEPNITIPDQTNTMTISRDGIVSVTQFGDTTPQEIGQIDVVDFINPTGLQA 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + F+ SG +P I ED G ++++GFLE+SN + EM +MI + + + Sbjct: 187 VGGNL-FLETAASG-APEIG-VASEDGFG-SIEQGFLENSNVKVVEEMVKMITVQRAY 240 >gi|261837791|gb|ACX97557.1| flagellar basal-body rod protein [Helicobacter pylori 51] Length = 269 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ GI TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + ++ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 REMSTLIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|269866427|ref|XP_002652270.1| flagellar hook protein flgE [Enterocytozoon bieneusi H348] gi|220062840|gb|EED41785.1| flagellar hook protein flgE [Enterocytozoon bieneusi H348] Length = 140 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----NDIDQKISF 58 SFNIGL+ A ++L +N++N T GF++ + +F+++ A K N I ++ Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVNL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSA 117 A +++ +V ++G LD A++G +F + G + TR G F+ DG + + Sbjct: 62 AAVSQQFTQGDVN---NSGGVLDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGYITNN 118 Query: 118 SG 119 +G Sbjct: 119 TG 120 >gi|188589304|ref|YP_001920228.1| flagellar basal body rod protein FlgG [Clostridium botulinum E3 str. Alaska E43] gi|188499585|gb|ACD52721.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E3 str. Alaska E43] Length = 256 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 18/130 (13%) Query: 5 FNIGLAAQL---ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 FNI AQ A +++L +++++ NT T G+++ V+FS++ + +D+K + Sbjct: 2 FNIFANAQSGMNAYQEKLDYLSNDLVNTSTTGYKSTDVQFSDL---LTESLDRKGTPLVN 58 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 V G +Y G+ ++TG + D A++G +FA G I TRDG K+ Sbjct: 59 KDAINGTGVKLGMDYRKDTQGNLLTTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKID 118 Query: 110 DDGSLVSASG 119 +G+LV A G Sbjct: 119 SNGTLVDARG 128 >gi|325529014|gb|EGD06027.1| flagellar hook protein FlgE [Burkholderia sp. TJI49] Length = 413 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 16/141 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I +AS + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTLASVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---- 119 + + G+ +T + LD A+ G+ +F + + + TRDG F+ +G +V+A G Sbjct: 66 QQFGQ--GAINATSSSLDVAINGNGFFQMSNNGAMTYTRDGTFQRDKNGYIVNAQGLNLM 123 Query: 120 -----KYPVLDMA-SVPIQIP 134 K V++ A +VP+Q P Sbjct: 124 GYAADKNGVINTAQTVPLQAP 144 >gi|146341904|ref|YP_001206952.1| flagellar basal body rod protein FlgG [Bradyrhizobium sp. ORS278] gi|146194710|emb|CAL78735.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bradyrhizobium sp. ORS278] Length = 262 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 50/261 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGA----------IKN 50 G+AAQ E + +++N++N T GF+ F ++ VGA + Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGFKKQTAAFQDLIYEHVRRVGAQSSDQGTILPVGI 66 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 DI + V + + S G+ TG +LD A+ G+ +F + P G TRDG F++ Sbjct: 67 DIGGGVKTVGTPR---SMTQGTLSQTGNDLDLAISGEGFFKILMPDGTYQYTRDGTFQMD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKV 154 + G +V+A G PV I IPQ V +G++S Q + Sbjct: 124 NQGRIVTAQGN-PVQPT----ISIPQNASGITVNSQGQVSVTLPGSTTSNIIGQLQVTRF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQM 213 I GL V +Q F +SG P + + G+ ++ +G LE +N + + EM ++ Sbjct: 179 INKAGLQPVGNNQ-FTDTPSSG----APQDGIANQDGLGSITQGSLEQANVDVVSEMSEL 233 Query: 214 IHLTQKFNSITTLIDENEKSM 234 I + + +I ++ M Sbjct: 234 IAAQRAYEMNAKVISAADQMM 254 >gi|163845457|ref|YP_001623112.1| flagellar hook protein FlgE [Brucella suis ATCC 23445] gi|163676180|gb|ABY40290.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 396 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 22/125 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N VG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASMVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 + G ST + D A++ + +F ++ P G LTR G F +G LV+ Sbjct: 70 -----------DQGGIRSTSSTTDLAIDDNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVN 118 Query: 117 ASGKY 121 ++G Y Sbjct: 119 SAGYY 123 >gi|161526184|ref|YP_001581196.1| flagellar basal body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|189349100|ref|YP_001944728.1| flagellar basal body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|221215573|ref|ZP_03588536.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD1] gi|160343613|gb|ABX16699.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|189333122|dbj|BAG42192.1| flagellar basal-body rod protein [Burkholderia multivorans ATCC 17616] gi|221164561|gb|EED97044.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD1] Length = 262 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 47/276 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y GS TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GSLTQTGNSKDVAINGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----I 155 RDG F+ G LV++SG Y +L I +PQ +G+ G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQILPA----ITVPQNATSLTIGKDGVVSVTQPGSSNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 ++ + + G F +SG +PN+ L T+ +G++E SN N + Sbjct: 171 GSLQIATFINPAGLEAKGENLFAETTSSG-APNVSQPGLNGAG--TLNQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ MI TQ+ I + ML+ + + S Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMKS 262 >gi|89092137|ref|ZP_01165092.1| flagellar basal-body rod protein FlgF [Oceanospirillum sp. MED92] gi|89083872|gb|EAR63089.1| flagellar basal-body rod protein FlgF [Oceanospirillum sp. MED92] Length = 247 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 14/180 (7%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ I TG +LD ++ GD W + P G TR G ++ LV+ SG PV+ + Sbjct: 69 GTLIDTGRKLDVSVTGDGWLTVIRPDGTEGYTRAGSLQINAASQLVTGSG-LPVMGNGGI 127 Query: 130 PIQIPQKDEI-------FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 PI +P + I V GE + + V + L + D + F + G+ Sbjct: 128 PIVLPPFENIEIATNGTITVRPLGENATELLVADQLKLVNPDPASVF--KGPDGLMITGD 185 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKSMLEAIR 239 PLE V V+ G+LE SN N++ E+ +I +++F ++ +EN +S +R Sbjct: 186 QVPLEPDPAVQVRSGYLEASNVNAVSELTGIITSSRQFEMQIKMMKTAEENSESAAAILR 245 >gi|92114097|ref|YP_574025.1| flagellar basal-body rod FlgF [Chromohalobacter salexigens DSM 3043] gi|91797187|gb|ABE59326.1| Flagellar basal-body rod FlgF [Chromohalobacter salexigens DSM 3043] Length = 253 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 27/250 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISFVASG 62 + G A A++Q+ S V N+SN T GFR ++ V G + ++ SG Sbjct: 6 YTAGSGASQAMQQQ-SVVNHNLSNVSTPGFRAELDAMRAVPVQGDGRLATRTSVAATTSG 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 ++ G +TG LD A++GDA+ A++ P+ G TR G +V DG +++ G+ Sbjct: 65 TDF---SPGYMNATGRRLDVAMQGDAFLAIQDPQGGEAYTRRGDLQVDADG-MLTVKGE- 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG---LYSVDMS------Q 167 PV+ PI +P D F++G G IS IA +G L + D+ Sbjct: 120 PVMGEQG-PIVVP-PDAEFSIGADGSISVLEAGANPDEIAPVGRLKLVTPDLQALTRGDD 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G+ R + P PL++ ++ G LE SN ++ M MI ++++ +I Sbjct: 178 GWFRLPPGDDAEIAAPQPLDE--DARLQSGVLEGSNVSATDAMVAMIDGARRYDMQMKVI 235 Query: 228 DENEKSMLEA 237 + +++ A Sbjct: 236 ESADQNAQRA 245 >gi|268317780|ref|YP_003291499.1| flagellar basal body rod protein [Rhodothermus marinus DSM 4252] gi|262335314|gb|ACY49111.1| flagellar basal body rod protein [Rhodothermus marinus DSM 4252] Length = 242 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/227 (21%), Positives = 108/227 (47%), Gaps = 16/227 (7%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK--EYLSKEVGSFISTGTE 79 +A+N++N +T G++ + V A+ +D + S + + ++ G+ TG+ Sbjct: 22 LANNLANVNTAGYKQERF----FVEALNERLDAERSPRSDRRLTQWNDLTQGALEHTGSP 77 Query: 80 LDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI--PQ 135 LD A+EGD +F + + TR G+F++ +G L + G +++ PIQ+ + Sbjct: 78 LDVAIEGDGFFVVTDAATGATFYTRAGQFRLDGEGYLRTIDGL--LVEGEDGPIQLLPHE 135 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP-NIPPTPLEDLSGVTV 194 ++ ++ + G + + +A + + + R E + + + P P+E + Sbjct: 136 RNRTLSISQDGVLRADEREVARLRIVRFARPEALQRVEGARFAATDQEPLPVETPH---L 192 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + GFLE SN N + M +MI +F + +I ++ + + R++ Sbjct: 193 RPGFLESSNVNPVLAMTEMIEHFHRFETQQKVIQTTDQLLGQITRDL 239 >gi|15895408|ref|NP_348757.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum ATCC 824] gi|15025131|gb|AAK80097.1|AE007715_2 Flagellar basal body rod protein [Clostridium acetobutylicum ATCC 824] gi|325509554|gb|ADZ21190.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum EA 2018] Length = 256 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 113/251 (45%), Gaps = 21/251 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISFV 59 G++ A +++L ++++N++N+ T G+++ V FS+++ + ND + + + Sbjct: 8 GVSGMAAEQEKLDSISNNLANSSTTGYKSETVGFSDLLYETLNRKGYPVTNDDNNR--YT 65 Query: 60 ASG---KEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 SG E++ GS + ++ A++G +F + +P G R G F V +G + Sbjct: 66 GSGVKANEWIRNNAQGSLTPSDSKTALAIDGSGYFKVTTPDGTEAYERAGSFTVNANGRI 125 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMG---LYSVDMSQGFV 170 V +G Y +D + P + V + G IS Q G+ +G +Y V + + Sbjct: 126 VDPNGNYLNIDYSVDPSTVKFTASNVAVAQDGTISIQNGQTTTNVGKINIYDVTGNDSMI 185 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 S P + V + + +LE+SN + EM MI + Q+ I + E Sbjct: 186 SVGKSLFVPKAGAQMFVNNKSV-IYQNYLENSNVDLGTEMTDMI-VAQRAYQINSKSLET 243 Query: 231 EKSMLEAIRNI 241 +M + N+ Sbjct: 244 GDNMWSIVNNM 254 >gi|295696121|ref|YP_003589359.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295411723|gb|ADG06215.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 265 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/270 (22%), Positives = 118/270 (43%), Gaps = 36/270 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S ++ + ++ + +N++N +TVGF+ +V F +++ G Sbjct: 1 MMRSLYSAVSGMRGFQTKMDVIGNNIANVNTVGFKASRVMFHDLISQTLSGATAPGDTTG 60 Query: 51 DIDQKISFVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRGII--LTRDGRF 106 + + + G + + G+ + TG D A++G+ +F ++ G TR G F Sbjct: 61 GSNPQQVGLGVGLASIDTPMTPGAPMMTGVPTDLAIDGNGFFVVQLSDGATQAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLY 161 + + +LV++ G + VLD PIQ+P + ++ + G ++ + A +GL Sbjct: 121 HIDSNRNLVTSEGLF-VLDTGGAPIQLPDNTKSVSIDKNGNVNCLLDDGTTQTAAQIGLA 179 Query: 162 SVDMSQG--------FVRRENSGISPNIPPTPLEDLSGV--TVKRGFLEDSNANSMYEMG 211 + +G FV NSG + P GV ++ G LE SN + E Sbjct: 180 NFANPEGLQKIGNNLFVETTNSGTADVQAPN-----QGVFGSITSGALEMSNVDLTNEFT 234 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +MI + F + I +++ ML+ + N+ Sbjct: 235 EMIIAQRAFQANARTITSDDQ-MLQEVVNL 263 >gi|148976396|ref|ZP_01813102.1| flagellar basal body rod protein FlgG [Vibrionales bacterium SWAT-3] gi|145964219|gb|EDK29475.1| flagellar basal body rod protein FlgG [Vibrionales bacterium SWAT-3] Length = 262 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N T+GF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F +E P G +R+G+F + DG+ Sbjct: 68 LGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQFTLNGDGA 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V++ YP+ I IP+ VG GE+S Sbjct: 128 IVTSGQGYPL----QPEIVIPEDAISVTVGNDGEVS 159 >gi|146305250|ref|YP_001185715.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina ymp] gi|145573451|gb|ABP82983.1| flagellar basal body FlaE domain protein [Pseudomonas mendocina ymp] Length = 395 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI + A+ ++L+T++ N++N T GF++ + +F G+I D V + Sbjct: 2 SFNIAMTGLSAVNEQLNTISHNIANAGTTGFKSSRTEF----GSIYADSQAMGVEVLATT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + +S+ GS ++TG LD A+ G +F G + TR G F D +V+A+G Sbjct: 58 QSISQG-GSLVTTGRSLDLAISGGGFFVTRGSNGDVSYTRAGVFGADKDNYIVNAAGLKL 116 Query: 120 -KYPV 123 YPV Sbjct: 117 QGYPV 121 >gi|89895707|ref|YP_519194.1| hypothetical protein DSY2961 [Desulfitobacterium hafniense Y51] gi|89335155|dbj|BAE84750.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 251 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 22/249 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV---GAIKNDIDQKISFVAS 61 G A LA + + +ADN++N T G++ + F E++ + +N+I Sbjct: 8 GAAGMLAAQTQSEIIADNVANIRTPGYKGEESSNKAFPEMLMMRTSTENEIPGNTLIGGI 67 Query: 62 GKEYLSKEV------GSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSL 114 G + ++ G +T D AL + F +++P G TR+G+ ++ +G L Sbjct: 68 GTGVVVDQITRMNVRGVLQTTDIPTDLALTAEEVFLVVDTPNGERYTRNGQLQLNSEGML 127 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 +A G YPVL PI K+ F V +G I+ +G + + L V + G +R Sbjct: 128 QTADG-YPVLGEEG-PIGPLSKN--FQVDAQGGITDQGVTMDRLRLVQVP-AVGLLREGQ 182 Query: 175 SGISPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 S + N P++D +G V +G LE SN N +M +MI + + + + +I ++ + Sbjct: 183 SLYASN---QPVQDFAGNEAVLQGTLEGSNVNLPGQMVKMITVMRAYEANQKVIQTHDAT 239 Query: 234 MLEAIRNIA 242 + +A+ I Sbjct: 240 LEKAVNEIG 248 >gi|294501851|ref|YP_003565551.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium QM B1551] gi|294351788|gb|ADE72117.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium QM B1551] Length = 274 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/283 (21%), Positives = 124/283 (43%), Gaps = 63/283 (22%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGF--------------------------RTIK 38 F A L+ +++ + +N++N +T GF R+I Sbjct: 5 FYTAAAGMLSQQRQTDLLTNNIANANTPGFKADQGTLKAFPDMLLQRMESEDLPTDRSIS 64 Query: 39 VKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS-----TGTELDFAL--------E 85 V+ + +GAI + Y+ + V +F T D AL E Sbjct: 65 VQNKKDIGAINTGV------------YMQETVPNFTQGDLQQTSQSTDIALMEQNMPTKE 112 Query: 86 GDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGE 144 G +F ++SP TR+ F + +G L +++G Y VL+ + PIQ+ K E F V Sbjct: 113 GGLFFVVQSPDNTPQYTRNSNFTLDQEGFLTTSTGAY-VLNTNNQPIQL--KSENFTVDS 169 Query: 145 KGEISQKGKVIATMGL-YSVDMSQGFVRRENSGISPNIPPTPL---EDLSGVT--VKRGF 198 +G +++ + +A + + Y+ D+ +++ +G+ + PL + G++ +K+GF Sbjct: 170 QGNVTENNQQVAQIDIAYASDLQT--IKKAGNGLYETLNNQPLPSARNNPGISYQLKQGF 227 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +E SN ++ M ++ + F + ++ ++SM +A I Sbjct: 228 VERSNVDAAQNMTDLLTAYRAFEANQKIMQAYDRSMDKAANEI 270 >gi|313903629|ref|ZP_07837019.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] gi|313466182|gb|EFR61706.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] Length = 272 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 109/251 (43%), Gaps = 33/251 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGF---RTIKVKFSEVVGAIKNDIDQKISFVAS--G 62 G+ A++ ++RL A +++N +T G+ R + F E+ + + +D + V G Sbjct: 34 GMLARVLQQERL---AGDLANVNTPGYKASRNVTEAFPEL---LLSRLDGTGAPVVGPLG 87 Query: 63 KEYLSKEVGS------FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + E G+ +++TG D ALEGD +F + P G TR G F V G L + Sbjct: 88 TGTVVAEPGADMRPGPWVTTGRPQDLALEGDGFFVVMGPGGPAYTRAGNFTVGSQGYLQA 147 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR----- 171 G PVLD P+ + F V G++ V+ T+ + G R Sbjct: 148 PDGS-PVLDTTGQPLLV--GSAQFTVRPDGQVVVGDAVLGTIARVTFANPAGLRRVGDNL 204 Query: 172 -RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + P +P + V++G LE SN + + + M+ + F + + Sbjct: 205 WQATAESGPAVP-------AATPVRQGVLEQSNVDPVQVVVAMLANFRAFEAAQRAVQAQ 257 Query: 231 EKSMLEAIRNI 241 ++++ AI+ + Sbjct: 258 DQTLGLAIQEV 268 >gi|262273529|ref|ZP_06051343.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] gi|262222507|gb|EEY73818.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] Length = 401 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S NIGL+ A +++T++ N+SN TVG+++ + +F +V + V++ + Sbjct: 2 SINIGLSGLRATSDQINTISHNISNVGTVGYKSSRTEFQDVYAPQFGGGEFGGVEVSNVR 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + G+ STG D A+ G+ +F ++ + TR+G F + DG LV+A G Sbjct: 62 QSFTS--GAATSTGRNSDLAINGEGFFMVQQNGQRMYTRNGIFNLDSDGYLVTADG 115 >gi|317492426|ref|ZP_07950855.1| flagellar basal-body rod protein FlgG [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919765|gb|EFV41095.1| flagellar basal-body rod protein FlgG [Enterobacteriaceae bacterium 9_2_54FAA] Length = 260 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 123/266 (46%), Gaps = 48/266 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLEAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTLRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F ++ P G + TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTDNSRDVAIKGQGFFQVQQPDGTLAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGE--ISQKGKVIATM-----G 159 +G LV++SG + V+ ++P + +D I +V ++G+ +Q G++ T G Sbjct: 125 NGQLVTSSG-FQVVPAITIPANATKLTIGRDGIVSVNQQGQTATTQVGQLTLTTFINDAG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 L SV + + E+SG P E G+ + +G++E SN N E+ MI Sbjct: 184 LESVGENL-YQETESSG-------APTESTPGLNGAGMLYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 TQ+ I + ML+ + + Sbjct: 236 -TQRAYEINSKAVTTSDQMLQRLTQL 260 >gi|28897555|ref|NP_797160.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus RIMD 2210633] gi|91225875|ref|ZP_01260844.1| polar flagellar FlgG [Vibrio alginolyticus 12G01] gi|153839683|ref|ZP_01992350.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|254230138|ref|ZP_04923533.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|260364613|ref|ZP_05777215.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|260878282|ref|ZP_05890637.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|260898112|ref|ZP_05906608.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|260901956|ref|ZP_05910351.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|262394937|ref|YP_003286791.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|269965422|ref|ZP_06179541.1| flagellar basal-body rod protein FlgG [Vibrio alginolyticus 40B] gi|5361010|gb|AAD42917.1|U12817_11 polar flagellar FlgG homolog [Vibrio parahaemolyticus] gi|28805767|dbj|BAC59044.1| polar flagellar FlgG [Vibrio parahaemolyticus RIMD 2210633] gi|91189525|gb|EAS75801.1| polar flagellar FlgG [Vibrio alginolyticus 12G01] gi|149746793|gb|EDM57781.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|151937331|gb|EDN56194.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|262338531|gb|ACY52326.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|269829901|gb|EEZ84131.1| flagellar basal-body rod protein FlgG [Vibrio alginolyticus 40B] gi|308086113|gb|EFO35808.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|308090170|gb|EFO39865.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|308106768|gb|EFO44308.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|308115105|gb|EFO52645.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|328473451|gb|EGF44299.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus 10329] Length = 262 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 38/255 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + ++T+++N++N TVG++ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I TR+G+F + +G+ Sbjct: 68 LGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQFTLNGEGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 LV++ YPV I IP+ VG GE+S Q +V+ + + Sbjct: 128 LVTSGSGYPV----EPEIVIPEDAISITVGTDGEVSVRVRGQQDNQVVGQLTITDFVNPG 183 Query: 168 GFVRRENSGISPNIPP----TPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 G E G + +P P E + G+ +++ LE SN N E+ MI + Sbjct: 184 GL---EPIGQNLYLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNVTEELVNMIEAQRV 240 Query: 220 FNSITTLIDENEKSM 234 + + +I +K M Sbjct: 241 YEMNSKVISSVDKMM 255 >gi|302878278|ref|YP_003846842.1| flagellar basal-body rod protein FlgG [Gallionella capsiferriformans ES-2] gi|302581067|gb|ADL55078.1| flagellar basal-body rod protein FlgG [Gallionella capsiferriformans ES-2] Length = 260 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 37/247 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + ++ T+A+N++N T GF+ + F +++ GA + Q S Sbjct: 11 GLDAQ---QTQMDTIANNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQSSQQTQIPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ TG +LD A+ G +F + P G TRDG F+ G Sbjct: 68 IGTGVRPVAAERIHTQGNLQQTGNQLDVAINGSGFFQVLMPDGSTGYTRDGSFQRDAQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATMGLYSVD-MS 166 +V+ASG +PV S+P +D + +V + G + Q G + T + M+ Sbjct: 128 MVTASG-FPVQPAISLPANAITVTIGRDGVVSVTQPGVAAPVQVGSMQVTTFINPAGLMA 186 Query: 167 QG---FVRRENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF-- 220 QG + +SG S N+P T + SG+ + + ++E SN N + EM MI + + Sbjct: 187 QGENLYQETASSGTPSTNVPGT---NGSGL-LSQNYVETSNVNVVEEMVNMIQTQRAYEI 242 Query: 221 --NSITT 225 SITT Sbjct: 243 NSKSITT 249 >gi|27464953|gb|AAN63050.1| flagellar component FlgF [Vibrio vulnificus] Length = 193 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 63/147 (42%), Gaps = 30/147 (20%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------ 70 Q L A+N++N T GFR D+ Q S A G E L V Sbjct: 17 QALQLRANNLANVSTTGFRA--------------DLAQARSMQAYG-EGLPTRVFSMTER 61 Query: 71 -------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 GS I+TG +LD +EG+ W + G LTR+G KV +G L +ASG + Sbjct: 62 PGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASG-HL 120 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEIS 149 VL PI IP +G G IS Sbjct: 121 VLGEGGAPITIPLPVSKIEIGRDGTIS 147 >gi|225871945|ref|YP_002753399.1| flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] gi|225791437|gb|ACO31527.1| flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] Length = 262 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 43/250 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 G++AQ + L T+A+N++N+ TVGFR +++F +++ GA ++ Q +S Sbjct: 11 GMSAQ---QMNLDTIANNLANSSTVGFRERQLQFQDMIYQNLVTPGAAQS--QQAVSAGL 65 Query: 59 -VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 + G + + E+ G T LD A++G +F ++ P G + TR G F + + G Sbjct: 66 QIGLGTKSAATELIMTQGDLNQTNNPLDLAIQGQGFFQVQRPDGTLAYTRAGNFYLNNQG 125 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATM--- 158 +V G D+ I +PQ + + G ++ Q G++ +AT Sbjct: 126 QVVDPQG-----DLLIPNITVPQNATAVTITQYGVVNATLPGQQNPQQLGQIQLATFVNP 180 Query: 159 -GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL S S ++ +SG + P + L T+++G+LE+SN + + QM+ Sbjct: 181 GGLESTG-SNDYLATLSSGNAVLGNPGGQQGLG--TLQQGYLENSNVDVVGAFVQMVLAQ 237 Query: 218 QKFNSITTLI 227 + + S + +I Sbjct: 238 RAYESNSKVI 247 >gi|127512279|ref|YP_001093476.1| flagellar hook protein FlgE [Shewanella loihica PV-4] gi|126637574|gb|ABO23217.1| flagellar basal body FlaE domain protein [Shewanella loihica PV-4] Length = 453 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 11/126 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQKISF 58 SFNI L+ A ++ L+T A+N++N +T GF+ + +F++V + K + ++ Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVTT 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLV 115 +++ + GS T LD A+ G +F S G + TR G FKV D LV Sbjct: 62 AQVAQQF---QQGSLQFTSNALDMAINGGGFFVTSSEVGSQDLSYTRAGAFKVDADSYLV 118 Query: 116 SASGKY 121 +++G Y Sbjct: 119 NSAGNY 124 >gi|325274800|ref|ZP_08140828.1| flagellar hook protein FlgE [Pseudomonas sp. TJI-51] gi|324100068|gb|EGB97886.1| flagellar hook protein FlgE [Pseudomonas sp. TJI-51] Length = 440 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 18/127 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A + L+ +N++N T GF++ + +F++ I ++GK Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFAD-------QYSNSIRGTSAGK 54 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + V G+ +TG LD A++G+ +FAL I TR G F +G Sbjct: 55 SVIGTGVKTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDNGSKIYTRAGAFYSDKEG 114 Query: 113 SLVSASG 119 +V+A G Sbjct: 115 YVVNAGG 121 >gi|295707199|ref|YP_003600274.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium DSM 319] gi|294804858|gb|ADF41924.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium DSM 319] Length = 274 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/272 (23%), Positives = 131/272 (48%), Gaps = 41/272 (15%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKND---IDQKIS 57 F A L+ +++ + +N++N +T GF+ T+K ++ ++++ D+ IS Sbjct: 5 FYTAAAGMLSQQRQTDLLTNNIANANTPGFKADQGTLKAFPDMLLQRMESEDLPTDRSIS 64 Query: 58 FVASGKE--------YLSKEVGSFIS-----TGTELDFAL--------EGDAWFALESPR 96 V + KE Y+ + V SF T + AL EG +F ++SP Sbjct: 65 -VQNKKEIGAINTGVYMQETVPSFTQGDLQQTSQSTNIALMEQNMPTKEGGLFFVVQSPD 123 Query: 97 GII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 TR+ F + +G L +++G Y VL+ + PIQ+ K E F V +G +++ + + Sbjct: 124 NTPQYTRNSNFTLDQEGFLTTSTGAY-VLNTNNQPIQL--KSENFTVDSQGNVTENNQQV 180 Query: 156 ATMGL-YSVDMSQGFVRRENSGISPNIPPTPL---EDLSGVT--VKRGFLEDSNANSMYE 209 A + + Y+ D+ +++ +G+ + PL + G++ +K+GF+E SN ++ Sbjct: 181 AQIDIAYASDLQT--IKKVGNGLYETLNNQPLPSARNNPGISYQLKQGFVERSNVDAAQS 238 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M ++ + F + ++ ++SM +A I Sbjct: 239 MTDLLTAYRAFEANQKIMQAYDRSMDKAANEI 270 >gi|260767767|ref|ZP_05876702.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260617276|gb|EEX42460.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315179401|gb|ADT86315.1| flagellar basal body rod protein FlgG [Vibrio furnissii NCTC 11218] Length = 262 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 118/260 (45%), Gaps = 48/260 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + ++T+++N++N TVGF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNIATISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I +R+G+F + D+G Sbjct: 68 LGAGSKVVATQKVHTHGNAQTTTNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLNDEGV 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V++ YP+ I IP VG GE+S Q +V+ + +VD Sbjct: 128 IVTSGSGYPL----QPEIVIPDDAISITVGNDGEVSVRVRGQQDNQVLGQ--ITTVD--- 178 Query: 168 GFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 F+ G+ P N+ PT P E + G+ V++ LE SN N E+ MI Sbjct: 179 -FINP--GGLEPIGQNLYLPTGASGDPQEGVPGLDGLGNVRQSMLESSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 236 EAQRVYEMNSKVISAVDKMM 255 >gi|126444045|ref|YP_001061246.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|134280998|ref|ZP_01767708.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei 305] gi|167725930|ref|ZP_02409166.1| flagellar hook protein FlgE [Burkholderia pseudomallei DM98] gi|167905090|ref|ZP_02492295.1| flagellar hook protein FlgE [Burkholderia pseudomallei NCTC 13177] gi|254182894|ref|ZP_04889487.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1655] gi|254299686|ref|ZP_04967135.1| flagellar hook protein FlgE [Burkholderia pseudomallei 406e] gi|125657218|gb|ABN48706.1| flagellar hook protein FlgE [Burkholderia pseudomallei] gi|126223536|gb|ABN87041.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|134248020|gb|EBA48104.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei 305] gi|157809637|gb|EDO86807.1| flagellar hook protein FlgE [Burkholderia pseudomallei 406e] gi|184213428|gb|EDU10471.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1655] Length = 395 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L+T++ N++N +T GF+ + F+ +V + +++ S Sbjct: 2 SFNIALSGINAINSQLNTISHNIANANTYGFKAGRANFATMVAGTQ----ANGTYIGSIT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + + G F+ TG LD A++G+ +F + G ++ TR G F+ DG +V G+ Sbjct: 58 QSVGTR-GGFLPTGRALDGAIDGNGFFVTKDSDGSMLFTRFGYFQRDADGYIVDGFGR 114 >gi|313497761|gb|ADR59127.1| FlgE [Pseudomonas putida BIRD-1] Length = 440 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 18/127 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A + L+ +N++N T GF++ + +F++ I ++GK Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFAD-------QYSNSIRGTSAGK 54 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + V G+ +TG LD A++G+ +FAL I TR G F G Sbjct: 55 TVIGTGVKTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDNGSKIYTRAGAFYSDKAG 114 Query: 113 SLVSASG 119 +V+ASG Sbjct: 115 YVVNASG 121 >gi|152988763|ref|YP_001349649.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PA7] gi|150963921|gb|ABR85946.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa PA7] Length = 249 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 27/226 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A+Q L R A+N++N T GFR + + +V G + ++ F S + Sbjct: 12 ASQNTLAMRAH--ANNLANISTSGFRRDFEQARSMQVFG---DSFPARV-FAMSERPGTD 65 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 GS TG ELD A++GD + A+++P G R + G L + G PVL Sbjct: 66 FSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDAVGMLRTGDG-LPVLGN 124 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGIS 178 PI +P ++++ +G+ G IS + V+ + L + ++ Q + + G+ Sbjct: 125 GG-PIAVPPEEKV-EIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQ--MEKGTDGLL 180 Query: 179 PNIP----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P PL D + V V GFLE SN N++ EM ++ L+++F Sbjct: 181 HYKPQPGEQVPLAD-ANVKVVSGFLESSNVNAVEEMTAILSLSRQF 225 >gi|312962588|ref|ZP_07777078.1| flagellar hook protein FlgE [Pseudomonas fluorescens WH6] gi|311283168|gb|EFQ61759.1| flagellar hook protein FlgE [Pseudomonas fluorescens WH6] Length = 437 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----NDIDQKISF 58 SFNIGL+ A ++L +N++N T GF++ + +F+++ A K N I ++ Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVNL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSA 117 A +++ +V +G LD A++G +F + G + TR G F+ DG + + Sbjct: 62 AAVSQQFTQGDVN---GSGGILDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGFITNN 118 Query: 118 SG 119 +G Sbjct: 119 TG 120 >gi|222824502|ref|YP_002576076.1| flagellar hook protein FlgE [Campylobacter lari RM2100] gi|222539723|gb|ACM64824.1| flagellar hook protein FlgE [Campylobacter lari RM2100] Length = 541 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKI 56 M T+F G+ + + A N+SN +TVGF+ V F +V V + Q Sbjct: 1 MFTAFYNGVNGVKSQSYGIDNTAHNISNVNTVGFKYSDVAFKDVFYSTVTTQSYNKGQTG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +G E G ++T E D A+ G +F + + GI TR+G F+ +G+LV Sbjct: 61 YGSVAGATNDVFEQGPLVATDHEFDVAIAGKGFFGVSNGNGIYYTRNGAFRPDANGNLVD 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNV 142 A+G Y + M +I D + N+ Sbjct: 121 ANGNYVLGTMNPSLQEIQLSDRVSNI 146 >gi|309779449|ref|ZP_07674210.1| flagellar basal-body rod protein FlgG [Ralstonia sp. 5_7_47FAA] gi|308921690|gb|EFP67326.1| flagellar basal-body rod protein FlgG [Ralstonia sp. 5_7_47FAA] Length = 260 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 21/134 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-----VAS 61 A + +L +++N++N +T GF+ + F +++ GA Q+ + + + Sbjct: 14 AQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGA---QSSQQTTLPSGMQIGT 70 Query: 62 GKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 G ++ E G+ TG D A+ G+ +F ++ P G + TRDG F++ G LV+ Sbjct: 71 GTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSFQINAQGQLVT 130 Query: 117 ASGKYPVLDMASVP 130 +SG YPV +VP Sbjct: 131 SSG-YPVQPAVTVP 143 >gi|113969606|ref|YP_733399.1| flagellar hook protein FlgE [Shewanella sp. MR-4] gi|113884290|gb|ABI38342.1| flagellar basal body FlaE domain protein [Shewanella sp. MR-4] Length = 453 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 20/150 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDSA 121 Query: 119 GKY----PV----------LDMASVPIQIP 134 G Y PV L A P+QIP Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTAK-PVQIP 150 >gi|152980177|ref|YP_001353111.1| flagellar hook protein FlgE [Janthinobacterium sp. Marseille] gi|151280254|gb|ABR88664.1| FlgE flagellar hook protein [Janthinobacterium sp. Marseille] Length = 416 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 SF GL+ A + L + +N++N+ TVGF+ +V+F+++ GA + I ++ Sbjct: 2 SFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAAQIGIGVQV 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + VA + S+ G+ + LD A+ GD +F + S I R+G+F++T +G + + Sbjct: 62 ARVA---QLFSQ--GNIAVSNNPLDMAINGDGFFRMSSGGSITYGRNGQFELTKEGYIQN 116 Query: 117 ASG 119 ASG Sbjct: 117 ASG 119 >gi|261253612|ref|ZP_05946185.1| flagellar basal-body rod protein FlgG [Vibrio orientalis CIP 102891] gi|260937003|gb|EEX92992.1| flagellar basal-body rod protein FlgG [Vibrio orientalis CIP 102891] Length = 262 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 115/258 (44%), Gaps = 44/258 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N TVG++ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I +R+G+F V D+G Sbjct: 68 LGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVNDEGV 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V++ Y + I IP+ + +G GE+S Q +V+ + +VD Sbjct: 128 IVTSGAGYAL----EPEIAIPEDAQSITIGTDGEVSVRIRGQQDNQVVGQ--IATVD--- 178 Query: 168 GFVRR-------ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHL 216 FV +N ++ P E + G V++ LE SN N E+ MI Sbjct: 179 -FVNPGGLEPIGQNLYMATGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTEELVNMIEA 237 Query: 217 TQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 238 QRVYEMNSKVISAVDKMM 255 >gi|260431756|ref|ZP_05785727.1| flagellar hook protein FlgE [Silicibacter lacuscaerulensis ITI-1157] gi|260415584|gb|EEX08843.1| flagellar hook protein FlgE [Silicibacter lacuscaerulensis ITI-1157] Length = 439 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 20/145 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+AA A RL+T++DN++N+ T G++ ++ F +V A Q S+ A Sbjct: 11 ISSSLNAGVAALKANANRLATISDNIANSSTFGYKRVETDFHSMVTA-----GQGGSYSA 65 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI-------ILTRDGRFKVT 109 G S+ + GS ++T D A++G + I +LT G F+ Sbjct: 66 GGVRTTSQRLIDQRGSLVTTNNSTDLAVQGRGLLPVRPSSQIGTPSNEMLLTTTGSFRTN 125 Query: 110 DDGSLVSASG----KYPVLDMASVP 130 +G LV+ SG +P S+P Sbjct: 126 AEGYLVTESGLVLLGWPANSDGSIP 150 >gi|86157813|ref|YP_464598.1| hypothetical protein Adeh_1387 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774324|gb|ABC81161.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 428 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 15/111 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISFVASGKEYLSKEVGS 72 LS V DN++N +TVGF++ + F + + G+ + + +++ V ++ L++ G+ Sbjct: 21 LSVVGDNIANANTVGFKSGRAAFEDALSQTVIGGSGQVGLGARLAGV---QKILTQ--GA 75 Query: 73 FISTGTELDFALEGDAWFALESPR----GIILTRDGRFKVTDDGSLVSASG 119 STG D AL+G+ +F + G TRDG+F V DDG LV+ G Sbjct: 76 LASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGYLVNLEG 126 >gi|217033353|ref|ZP_03438784.1| hypothetical protein HP9810_9g106 [Helicobacter pylori 98-10] gi|216944294|gb|EEC23719.1| hypothetical protein HP9810_9g106 [Helicobacter pylori 98-10] Length = 269 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAGIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|259907636|ref|YP_002647992.1| Flagellar basal-body rod protein, FlgG [Erwinia pyrifoliae Ep1/96] gi|224963258|emb|CAX54742.1| Flagellar basal-body rod protein, FlgG [Erwinia pyrifoliae Ep1/96] gi|283477478|emb|CAY73394.1| Flagellar basal-body rod protein flgG [Erwinia pyrifoliae DSM 12163] Length = 260 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +++N++N + GF+ + F +++ GA ++ Sbjct: 11 GLEAQ---QTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQTTLPTGMQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + ++ VA+ + + GS TG + D A++G +F ++ P G TRDG F + + Sbjct: 68 LGTGVATVATQRMHTQ---GSLTQTGRDYDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNE 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----I 155 +G +V+A G PV I +P + VGE G ++ Q G++ I Sbjct: 125 NGQMVTAEGN-PV----QPDITVPADAQKLTVGEDGIVTATVPGQAAPQQIGQLTLANFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL S+ + +V + SG +PN TP D +G +K ++E SN N E+ MI Sbjct: 180 NDAGLESLGGNL-YVETQASG-APN-EATPGMDGAG-RLKHQYIETSNVNVAEELVTMIQ 235 Query: 216 LTQKF 220 + + + Sbjct: 236 VQRAY 240 >gi|188527163|ref|YP_001909850.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori Shi470] gi|188143403|gb|ACD47820.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori Shi470] Length = 269 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 117/277 (42%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A A RL ++N++N +T GF+ + F + + + + Sbjct: 1 MQNGYYAATGAMAAQFNRLDLTSNNLANLNTNGFKRDDAVTGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSM 207 G + L S + + I N+ E + + ++++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISDSGSLRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAA 267 >gi|26991077|ref|NP_746502.1| flagellar hook protein FlgE [Pseudomonas putida KT2440] gi|24986112|gb|AAN69966.1|AE016635_2 flagellar hook protein FlgE [Pseudomonas putida KT2440] Length = 440 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 18/127 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A + L+ +N++N T GF++ + +F++ I ++GK Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFAD-------QYSNSIRGTSAGK 54 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + V G+ +TG LD A++G+ +FAL I TR G F G Sbjct: 55 TVIGTGVKTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDNGSKIYTRAGAFYSDKAG 114 Query: 113 SLVSASG 119 +V+ASG Sbjct: 115 YVVNASG 121 >gi|295678056|ref|YP_003606580.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1002] gi|295437899|gb|ADG17069.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1002] Length = 262 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGAGFFQVQMPDGQTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG Y V+ I IP +G G + S + + TM L Sbjct: 121 QTNAQGQLVTSSG-YQVIPA----ITIPANATSLTIGSDGSVSITVAGSSNTQQLGTMQL 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G F +SG +PN+ L T+ +G++E SN N + E+ Sbjct: 176 ATFINPAGLDSKGENLFAETASSG-APNVAQPGLNGAG--TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|146293690|ref|YP_001184114.1| flagellar hook protein FlgE [Shewanella putrefaciens CN-32] gi|145565380|gb|ABP76315.1| flagellar basal body FlaE domain protein [Shewanella putrefaciens CN-32] gi|319427089|gb|ADV55163.1| flagellar hook-basal body protein [Shewanella putrefaciens 200] Length = 453 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV +V +S Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTSSELGTLDFSYTRAGAFKVDASNYMVDSS 121 Query: 119 GKY----PV----------LDMASVPIQIP 134 G Y PV L A P+QIP Sbjct: 122 GNYLQTFPVDKEGNSTSVSLTTAK-PVQIP 150 >gi|170737040|ref|YP_001778300.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] gi|169819228|gb|ACA93810.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] Length = 261 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 37/249 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL------- 66 A + +L +A+N++N +TVGF+ + F ++ + ++S A+G Sbjct: 14 AQDAKLQAIANNLANVNTVGFKRDRAVFEDMFYRAERQPGAQVSDNATGPGVQLGNGTRI 73 Query: 67 --SKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 +++V G+ TG LD A+ G+ + +E P G + TR G+ ++ D G L +A G Sbjct: 74 AGTQKVFTTGALQETGQPLDVAVVGNGFLQVEMPNGEVGYTRAGQLRLNDQGRLTNAQG- 132 Query: 121 YPVLDMASVP-IQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSVDMSQGFVRREN-- 174 + VP I IP + + E G +S GK +A +G + ++Q FV Sbjct: 133 -----LPLVPGIDIPPEAVGITISENGTVSVSTGAGKTLAEVG--QLQLAQ-FVNPAGLL 184 Query: 175 --------SGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 ++ P +G+ T+K+G LE SN ++ EM +MI + + T Sbjct: 185 ALGGNLYAETVASGAPTESEPGQNGIGTIKQGALEGSNVLAVEEMVEMIAAQRTYEMNTK 244 Query: 226 LIDENEKSM 234 ++ + M Sbjct: 245 VLSAADNMM 253 >gi|284801027|ref|YP_003412892.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5578] gi|284994169|ref|YP_003415937.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5923] gi|284056589|gb|ADB67530.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5578] gi|284059636|gb|ADB70575.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5923] Length = 411 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 28/164 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVAS---G 62 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + G Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGSKIG 73 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGK 120 GS STG D AL+G +F G I+ TRDG F V+D+ L + GK Sbjct: 74 AILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGK 133 Query: 121 Y----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 Y VL+ PIQIP I GE ++ G + Sbjct: 134 YVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|114046838|ref|YP_737388.1| flagellar hook protein FlgE [Shewanella sp. MR-7] gi|113888280|gb|ABI42331.1| flagellar basal body FlaE domain protein [Shewanella sp. MR-7] Length = 453 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 20/150 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDSA 121 Query: 119 GKY----PV----------LDMASVPIQIP 134 G Y PV L A P+QIP Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTAK-PVQIP 150 >gi|206890142|ref|YP_002249849.1| flagellar hook basal-body protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742080|gb|ACI21137.1| flagellar hook basal-body protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] Length = 239 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 27/217 (12%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISFVASGKE 64 E LS +++N++N +T G++ K F+ + I D + F G + Sbjct: 16 ENELSAISNNLANINTTGYK--KQSFASRLYPLLSGKPSQSNVIYQDARAQTYF---GTQ 70 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 Y+ G+ T D ++G+ +F + I+ TR+G F D LV+ +G VL Sbjct: 71 YIDTSQGALKQTHNPFDLGIQGEGFFVVRQGNKILYTREGSFTRDKDNYLVTQTG-LRVL 129 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 D + PI I G+ G I G I + L ++ + + G+ Sbjct: 130 DENNNPIIIDGTK--IEYGKDGTILVDGNPIGRIKLVKLNNLRHVGQSLYEGVEAG---- 183 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + + +G++E+SN N M EM QMI + F+ Sbjct: 184 ----QANGQILQGWIENSNVNPMSEMVQMIQAIRNFD 216 >gi|83718065|ref|YP_438389.1| flagellar hook protein flgE [Burkholderia thailandensis E264] gi|167614837|ref|ZP_02383472.1| flagellar hook protein flgE [Burkholderia thailandensis Bt4] gi|257141422|ref|ZP_05589684.1| flagellar hook protein flgE [Burkholderia thailandensis E264] gi|83651890|gb|ABC35954.1| flagellar hook protein flgE [Burkholderia thailandensis E264] Length = 395 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L+T++ N++N +T GF+ + F+ +V + +++ S Sbjct: 2 SFNIALSGINAINSQLNTISHNIANANTYGFKAGRANFATMVAGTQ----ANGTYIGSIT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + + G F+ TG LD A++G+ +F + G ++ TR G F+ DG +V G+ Sbjct: 58 QSVGTR-GGFLPTGRALDGAIDGNGFFVTKDSDGSMLFTRFGYFQRDADGYIVDGFGR 114 >gi|16799780|ref|NP_470048.1| flagellar hook protein FlgE [Listeria innocua Clip11262] gi|16802739|ref|NP_464224.1| flagellar hook protein FlgE [Listeria monocytogenes EGD-e] gi|47095263|ref|ZP_00232874.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 1/2a F6854] gi|116872086|ref|YP_848867.1| flagellar hook protein FlgE [Listeria welshimeri serovar 6b str. SLCC5334] gi|224498779|ref|ZP_03667128.1| flagellar hook protein FlgE [Listeria monocytogenes Finland 1988] gi|224501998|ref|ZP_03670305.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-561] gi|254829354|ref|ZP_05234041.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N3-165] gi|254900067|ref|ZP_05259991.1| flagellar hook protein FlgE [Listeria monocytogenes J0161] gi|254911380|ref|ZP_05261392.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935707|ref|ZP_05267404.1| flagellar hook protein FlgE [Listeria monocytogenes F6900] gi|255027496|ref|ZP_05299482.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-003] gi|16410086|emb|CAC98775.1| lmo0697 [Listeria monocytogenes EGD-e] gi|16413157|emb|CAC95937.1| lin0705 [Listeria innocua Clip11262] gi|47016334|gb|EAL07256.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 1/2a F6854] gi|116740964|emb|CAK20084.1| flagellar hook protein FlgE, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|258601767|gb|EEW15092.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N3-165] gi|258608290|gb|EEW20898.1| flagellar hook protein FlgE [Listeria monocytogenes F6900] gi|293589317|gb|EFF97651.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313620066|gb|EFR91579.1| flagellar hook protein FlgE [Listeria innocua FSL S4-378] Length = 411 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 28/164 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVAS---G 62 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + G Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGSKIG 73 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGK 120 GS STG D AL+G +F G I+ TRDG F V+D+ L + GK Sbjct: 74 AILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGK 133 Query: 121 Y----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 Y VL+ PIQIP I GE ++ G + Sbjct: 134 YVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|299066528|emb|CBJ37718.1| Flagellar basal-body rod protein (Distal rod protein) [Ralstonia solanacearum CMR15] Length = 263 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 43/242 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M + +G A + L T+A+N++N +T GF+ +V F+++V G I+ D + Sbjct: 1 MFDALYVGATGMQAQQLNLDTIANNLANVNTTGFKKSRVSFTDLVAQEAGRIQPTSDASL 60 Query: 57 SFVAS--------GKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGR 105 +++ G ++K + G+ TG+ D A++G+ + + P G TR G Sbjct: 61 GPLSALPGLGAGVGISSVAKLFDTGNMQQTGSSFDVAIQGEGFLEVALPDGSRAFTRGGT 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP---------------IQIPQKDEIFNVGEKGEISQ 150 KV DG LV+ +G Y V SVP I +P + + G+ E++ Sbjct: 121 LKVNSDGMLVTQAG-YVVKPGISVPSNAKDLTIAADGHVRISVPNQSSPIDAGQL-ELAH 178 Query: 151 KGKVIATMGLYSVDMSQG--FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 A+ G+ ++QG R ++ P + ++L T +GFLE SN + Sbjct: 179 ----FASPGML---LAQGDNLYRASDTSGEPVVGKAGQDNLG--TFAQGFLEGSNVKMID 229 Query: 209 EM 210 EM Sbjct: 230 EM 231 >gi|239817163|ref|YP_002946073.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] gi|239803740|gb|ACS20807.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] Length = 260 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 123/258 (47%), Gaps = 32/258 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISF-- 58 GL AQ + +L V++N++N T GF+ + F ++ VG +D + S Sbjct: 11 GLDAQ---QTQLDVVSNNLANVGTTGFKRSRAVFEDLMYQNLRQVGGQTSDQTRLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V +G ++ E G+ T D A+ G +F + P G TRDG F+ DG Sbjct: 68 VGTGVHVVATERIHSQGNLTKTDKPTDVAINGGGFFQVLMPDGTTAYTRDGSFQTDRDGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKV-IATMGLYSVDMS 166 LV+ASG +PV ++P +D I ++ + G+ + Q G++ +AT + S Sbjct: 128 LVTASG-FPVQPAITLPANATSLTIGRDGIVSITQAGQTNTVQVGQLQLATFLNPAGLQS 186 Query: 167 QG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 +G + + SG +PN P D +G+ + +G++E SN N + E+ MI TQ+ I Sbjct: 187 KGENLYAETDASG-APN-QVNPGIDGAGI-LSQGYVEASNVNVVEELVNMIA-TQRAYEI 242 Query: 224 TTLIDENEKSMLEAIRNI 241 + + ML+ + + Sbjct: 243 NSKAVQTSDQMLQRLAQL 260 >gi|254830312|ref|ZP_05234967.1| flagellar hook protein FlgE [Listeria monocytogenes 10403S] Length = 411 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 28/164 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVAS---G 62 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + G Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGSKIG 73 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGK 120 GS STG D AL+G +F G I+ TRDG F V+D+ L + GK Sbjct: 74 AILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGK 133 Query: 121 Y----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 Y VL+ PIQIP I GE ++ G + Sbjct: 134 YVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|117919772|ref|YP_868964.1| flagellar hook protein FlgE [Shewanella sp. ANA-3] gi|117612104|gb|ABK47558.1| GCN5-related N-acetyltransferase [Shewanella sp. ANA-3] Length = 453 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 20/150 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDSA 121 Query: 119 GKY----PV----------LDMASVPIQIP 134 G Y PV L A P+QIP Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTAK-PVQIP 150 >gi|308184156|ref|YP_003928289.1| flagellar basal-body rod protein [Helicobacter pylori SJM180] gi|308060076|gb|ADO01972.1| flagellar basal-body rod protein [Helicobacter pylori SJM180] Length = 269 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLENQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGTFEGTHNPLDFALTSPNIYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPNAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +K+ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGESVHQVSDSGALKQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|295706277|ref|YP_003599352.1| flagellar hook protein FlgE [Bacillus megaterium DSM 319] gi|294803936|gb|ADF41002.1| flagellar hook protein FlgE [Bacillus megaterium DSM 319] Length = 263 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 13/161 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S G++ + +L + +N++N +T G++ + F ++V GA + Sbjct: 1 MLRSMYSGISGMKNFQTKLDVLGNNIANVNTYGYKKGRTTFQDLVSQQVAGATAPGANRG 60 Query: 51 DIDQKISFVAS--GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ K + S G + GS STG LD A+ GD +F + TR G F + Sbjct: 61 GVNAKQVGLGSQIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVVRDGVTNYYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G+LV+ G Y V I IP + +++G G+++ Sbjct: 121 DSSGNLVTGDGLY-VQKTGGGNINIPSTSKSYSIGADGKVN 160 >gi|209521591|ref|ZP_03270289.1| flagellar basal-body rod protein FlgG [Burkholderia sp. H160] gi|209497974|gb|EDZ98131.1| flagellar basal-body rod protein FlgG [Burkholderia sp. H160] Length = 262 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGAGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG Y V+ I IP +G G + S + + TM L Sbjct: 121 QTNAQGQLVTSSG-YQVIP----AITIPTNATSLTIGSDGSVSITVAGSSNTQQLGTMQL 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G F +SG +PN+ L T+ +G++E SN N + E+ Sbjct: 176 ATFINPAGLDAKGENLFAETASSG-APNVSQPGLNGAG--TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|315281358|ref|ZP_07869998.1| flagellar hook protein FlgE [Listeria marthii FSL S4-120] gi|313614997|gb|EFR88501.1| flagellar hook protein FlgE [Listeria marthii FSL S4-120] Length = 411 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 28/164 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVAS---G 62 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + G Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGSKIG 73 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGK 120 GS STG D AL+G +F G I+ TRDG F V+D+ L + GK Sbjct: 74 AILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGK 133 Query: 121 Y----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 Y VL+ PIQIP I GE ++ G + Sbjct: 134 YVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|302037628|ref|YP_003797950.1| flagellar basal-body rod protein FlgG [Candidatus Nitrospira defluvii] gi|300605692|emb|CBK42025.1| Flagellar basal-body rod protein FlgG [Candidatus Nitrospira defluvii] Length = 263 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 41/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------- 58 G+ AQ + + T+A+N++N +T F+ + +F +++ I+ S Sbjct: 11 GMTAQ---QLNVDTIANNLANVNTNAFKRSRAEFGDLLYQIQRLPGTNASNVGVFPVGVQ 67 Query: 59 -------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTD 110 + KE++ G+ TG +LD A++G +F + P G I+ TR+G FK + Sbjct: 68 VGGGVRPITVAKEWVQ---GNMRQTGNDLDLAIDGAGFFQVTRPDGTIMYTRNGSFKRDN 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVD 164 G+LV+ G D + I IP +VG+ G +S + + + L D Sbjct: 125 VGNLVTGDG-----DQLNPVITIPSGALKIDVGQDGTVSVLLPGVTQASQVGQIQLVRFD 179 Query: 165 MSQGFVRRENSGISPNIPPTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G V + + P + T+++GFLE SN N EM MI + Q Sbjct: 180 NPSGLVAMGGNLFLDSFASGPAQQGTGGFSTGFGTLQQGFLESSNVNLAEEMVNMI-IAQ 238 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + + M++ N+ Sbjct: 239 RSYEINSKTIQASDEMMQIANNL 261 >gi|15596278|ref|NP_249772.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PAO1] gi|107100526|ref|ZP_01364444.1| hypothetical protein PaerPA_01001551 [Pseudomonas aeruginosa PACS2] gi|116049010|ref|YP_792188.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa UCBPP-PA14] gi|218892955|ref|YP_002441824.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa LESB58] gi|254234217|ref|ZP_04927540.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa C3719] gi|254239439|ref|ZP_04932761.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 2192] gi|296390555|ref|ZP_06880030.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PAb1] gi|313106036|ref|ZP_07792295.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 39016] gi|9946997|gb|AAG04470.1|AE004539_12 flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa PAO1] gi|115584231|gb|ABJ10246.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa UCBPP-PA14] gi|126166148|gb|EAZ51659.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa C3719] gi|126192817|gb|EAZ56880.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 2192] gi|218773183|emb|CAW28995.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa LESB58] gi|310878797|gb|EFQ37391.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 39016] Length = 249 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 27/226 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A+Q L R A+N++N T GFR + + +V G D F S + Sbjct: 12 ASQNTLAMRAH--ANNLANISTSGFRRDFEQARSMQVFG----DSFPARVFAMSERPGTD 65 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 GS TG ELD A++GD + A+++P G R + G L + G PVL Sbjct: 66 FSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDG-LPVLGN 124 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGIS 178 PI +P ++++ +G+ G IS + V+ + L + ++ Q + + G+ Sbjct: 125 GG-PIAVPPEEKV-EIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQ--MEKGTDGLL 180 Query: 179 PNIP----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P PL D + V V GFLE SN N++ EM ++ L+++F Sbjct: 181 HYKPQPGEQAPLAD-ANVKVVSGFLESSNVNAVEEMTAILSLSRQF 225 >gi|261839205|gb|ACX98970.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 52] Length = 269 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + ++ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|313624712|gb|EFR94667.1| flagellar hook protein FlgE [Listeria innocua FSL J1-023] Length = 411 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 28/164 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVAS---G 62 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + G Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGSKIG 73 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGK 120 GS STG D AL+G +F G I+ TRDG F V+D+ L + GK Sbjct: 74 AILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGK 133 Query: 121 Y----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 Y VL+ PIQIP I GE ++ G + Sbjct: 134 YVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|323527711|ref|YP_004229864.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1001] gi|323384713|gb|ADX56804.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1001] Length = 262 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/266 (24%), Positives = 112/266 (42%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG Y V+ I +P +G G + S + + TM L Sbjct: 121 QTNAQGQLVTSSG-YQVIP----AITVPTNATSLTIGSDGAVSITVAGSTNTQQLGTMQL 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G F +SG +PN+ L T+ +G++E SN N + E+ Sbjct: 176 ATFINPAGLDAKGENLFAETASSG-APNVAQPGLNGAG--TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|89075497|ref|ZP_01161908.1| putative polar flagellar FlgG [Photobacterium sp. SKA34] gi|89048769|gb|EAR54340.1| putative polar flagellar FlgG [Photobacterium sp. SKA34] Length = 262 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 27/161 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ + +ST+++N++N TVGF+ + F ++ +I+Q Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGFKKGRAVFEDL---FYQNINQPGGQSTQDTTLPT 64 Query: 56 -ISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + A K +++V G+ +T +D +EGD +F + P G I TR+G+F + Sbjct: 65 GLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPDGNIGYTRNGQFTINS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +G LV++ YPV I +P+ VG GE+S + Sbjct: 125 EGQLVTSGSGYPV----QPEIVVPEDAVGITVGTDGEVSAR 161 >gi|90408062|ref|ZP_01216233.1| Flagellar basal body rod protein FlgG [Psychromonas sp. CNPT3] gi|90310819|gb|EAS38933.1| Flagellar basal body rod protein FlgG [Psychromonas sp. CNPT3] Length = 262 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 GL AQ + ++T+++N++N TVGF+ + F +++ A +N Sbjct: 11 GLDAQ---QTNVATISNNLANASTVGFKKSRAIFEDLLYQNINQPGANATQNTKLPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G + ++ + G+ ++T LD ++G +F +E P G TR+G+F++ +DG Sbjct: 68 IGAGAKVVAVQKNFSQGNALTTKNSLDIMIDGRGFFEIEMPDGSSGYTRNGQFQLNEDGI 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V+ Y ++ IQIP +VG +GE+S Sbjct: 128 IVTPGSGYALMPQ----IQIPNDALSISVGSEGEVS 159 >gi|150020363|ref|YP_001305717.1| hypothetical protein Tmel_0465 [Thermosipho melanesiensis BI429] gi|149792884|gb|ABR30332.1| protein of unknown function DUF1078 domain protein [Thermosipho melanesiensis BI429] Length = 233 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 110/249 (44%), Gaps = 58/249 (23%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--VASGKEYLSKEVGSFIS 75 +L T+++N+SN DT G+++ + F Q SF + +E K++GSF Sbjct: 18 KLDTLSNNISNVDTAGYKSDSLAFKAYFEK------QLYSFNPMPQKEEVEVKKIGSFEQ 71 Query: 76 ------------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 TG LDFA++G +F +E+ + TR G FK ++G L++ Sbjct: 72 ALILDQVKTNYSQGTLEYTGHSLDFAIDGKGFFVVENAGKRMYTRAGNFKANEEGYLITP 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS--QG-FVRREN 174 G Y VL I++ G + +K V+A V + +G VR+EN Sbjct: 132 EG-YYVLGKNDQKIKLD-----------GNVLEKLLVVALKNPRKVGYTFFKGEEVRKEN 179 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + +G++E SN N + EM +MI T+ + +++ + +++ + Sbjct: 180 -----------------FRILQGYVEKSNVNIVREMVKMIEATRHYETLSKAVTVHDELL 222 Query: 235 LEAIRNIAS 243 ++I + S Sbjct: 223 NKSINSAGS 231 >gi|221199739|ref|ZP_03572782.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2M] gi|221208656|ref|ZP_03581656.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2] gi|221171467|gb|EEE03914.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2] gi|221179978|gb|EEE12382.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2M] Length = 413 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 16/141 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I +AS + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---- 119 + + G+ +T + LD A+ G+ +F + + I TRDG F+ +G +V++ G Sbjct: 66 QQFGQ--GTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLM 123 Query: 120 -----KYPVLDMA-SVPIQIP 134 K V++ A +VP+Q P Sbjct: 124 GYAADKNGVINTAQTVPLQAP 144 >gi|108562780|ref|YP_627096.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1] gi|107836553|gb|ABF84422.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1] Length = 269 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPDAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGIHQVSDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|238782793|ref|ZP_04626822.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC 43970] gi|238716216|gb|EEQ08199.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC 43970] Length = 251 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA AL R ++N++N T GFR F V I + + V Y Sbjct: 11 AANAAL-NRQGVTSNNLANASTTGFRAQLSAFRAV--PINGPSVETRTLVTESTPYHDDS 67 Query: 70 VGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 +G+ TG LD AL D W A+E G TR G + +G L+ +G+ + D Sbjct: 68 MGTINQTGRNLDVALPQDGWLAVELLGGGEAYTRAGNIDIDSEG-LLRVNGRAVLGDGG- 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRENSGI----- 177 PI +P + E+ + G I+ G +A +G L V+ +R + G+ Sbjct: 126 -PINVPPQAEL-TIAPDGTITALGAGEEPSALAQVGRLKLVNARLQDLRHGDDGLFHIAE 183 Query: 178 -SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 SPN L + + G LE SN + + M MI + F+ + + +D+NEK Sbjct: 184 TSPNAGLMALPADQSLQLAPGALESSNVSPVKSMVDMIATARGFDMNIKVISAVDDNEK 242 >gi|307637047|gb|ADN79497.1| flagellar basal-body rod protein [Helicobacter pylori 908] gi|325995639|gb|ADZ51044.1| Flagellar basal-body rod protein [Helicobacter pylori 2018] gi|325997235|gb|ADZ49443.1| Flagellar basal-body rod protein [Helicobacter pylori 2017] Length = 269 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQEYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPNAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGIHQVSDSGALRQSMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|150388209|ref|YP_001318258.1| flagellar basal body rod protein [Alkaliphilus metalliredigens QYMF] gi|149948071|gb|ABR46599.1| flagellar basal body rod protein [Alkaliphilus metalliredigens QYMF] Length = 363 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 14/180 (7%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ T LD AL G +F + +P G + TR+G F ++++G LV+ G + ++ Sbjct: 188 GAVAETANPLDVALNGQGFFRILTPNGEMYTRNGNFTMSNEGQLVTTEGHEVEGNAGAIT 247 Query: 131 IQIPQ--KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 Q E + +KGEI G V+ + + +++ + + S G + Sbjct: 248 FNEAQLMAAENIQITDKGEILLDGVVVDQIQIVNINNVKDLRKHGQSYYYGEEGFELELA 307 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P E V +G+LE+SN NS+ EM +MI + + + ++ ++ + +A+ I Sbjct: 308 PFEGE------VLQGYLEESNINSIQEMVEMISTFRDYEANQKVVQAYDEILQKAVGEIG 361 >gi|114330363|ref|YP_746585.1| flagellar basal body rod protein FlgG [Nitrosomonas eutropha C91] gi|114307377|gb|ABI58620.1| flagellar basal-body rod protein FlgG [Nitrosomonas eutropha C91] Length = 260 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 52/268 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + ++ +A+N++N T GF+ ++ F +++ GA ++ Sbjct: 11 GLDAQ---QTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIRQPGAQSSERTRLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + VA+ +L G+ TG D A++G+ +F + P G + TRDG F+ Sbjct: 68 LGTGVRPVATENIFLQ---GNLQQTGNTRDVAIQGEGFFQILLPDGTLAYTRDGAFQSDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG LV+ASG +P+ I IP +G G +S Q I Sbjct: 125 DGQLVTASG-FPL----QPSITIPPNTLSITIGRDGTVSVLTPGSATPLPVGNIQLTSFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQM 213 GL + ++ +SG+ +P IP T +G+ + +GF+E SN N + E+ +M Sbjct: 180 NPAGLQRFGENL-YLETMSSGVPNPGIPGT-----NGIGLLNQGFVETSNVNVVEELVEM 233 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I TQ+ I + + ML + + Sbjct: 234 IQ-TQRAYEINSRSIQTSDQMLSRLTQL 260 >gi|317406200|gb|EFV86449.1| flagellar basal-body rod protein FlgF [Achromobacter xylosoxidans C54] Length = 253 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 21/238 (8%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + + + +++NM+N +T GFR + V + ++S VAS + E+G+ Sbjct: 15 ITEHQAALSNNMANVNTPGFREQIALYRSVPVNDGVSLPTRVSTVASTPRN-NFEMGNMQ 73 Query: 75 STGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG +LD AL + W A+++P+G TR G +V +G L ++ G+ PV+ + I + Sbjct: 74 TTGRDLDVALASSNGWIAVQTPQGEAYTRAGSLQVGVNGLLQTSLGQ-PVMSDQNGIIDV 132 Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYS--------------VDMSQGFVRRENSGISP 179 P + + G I+ G A + + V G R P Sbjct: 133 PDQ-AALTITSDGTITAIGAGDAPNNILNLGRIKLANPPEAQLVHGDDGVFRLAPVNGQP 191 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 PP P + + V G LE SN N M M MI ++F ++ + +++ A Sbjct: 192 -APPVPAD--PSLRVLSGVLEGSNTNPMAAMVGMIENARRFEQQMQVVQQADRNAERA 246 >gi|161526186|ref|YP_001581198.1| flagellar hook protein FlgE [Burkholderia multivorans ATCC 17616] gi|189349098|ref|YP_001944726.1| flagellar hook protein FlgE [Burkholderia multivorans ATCC 17616] gi|160343615|gb|ABX16701.1| flagellar basal body FlaE domain protein [Burkholderia multivorans ATCC 17616] gi|189333120|dbj|BAG42190.1| flagellar hook protein [Burkholderia multivorans ATCC 17616] Length = 414 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 16/141 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I +AS + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---- 119 + + G+ +T + LD A+ G+ +F + + I TRDG F+ +G +V++ G Sbjct: 66 QQFGQ--GTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLM 123 Query: 120 -----KYPVLDMA-SVPIQIP 134 K V++ A +VP+Q P Sbjct: 124 GYAADKNGVINTAQTVPLQAP 144 >gi|4378858|gb|AAD19726.1| flagellar hook protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 412 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 24/172 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKISFV 59 +F L A + LS ++N++N+ + GF+ F E+V A +I Q Sbjct: 2 AFYTSLTGLNAAQTDLSVPSNNIANSGSYGFKKTTTDFGELVADSPLASGQNIGQGTRLR 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR----GIILTRDGRFKVTDDGSLV 115 A+ +++ S GS +T LD + GD +F ++SPR I LTRDG F + ++V Sbjct: 62 ATIQDFTS---GSMKTTNRALDMMVNGDGFFLVKSPRPPSGTISLTRDGSFLTDKNNNVV 118 Query: 116 SASGKYPVLDMASVPIQI---PQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 ++ G Y +Q+ I+N GE G + G+V+ + L S + Sbjct: 119 TSDGHY---------LQVYATTNSGNIYNNGETGS-ATGGRVVKNLTLPSYE 160 >gi|54294165|ref|YP_126580.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Lens] gi|54297184|ref|YP_123553.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Paris] gi|148358808|ref|YP_001250015.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Corby] gi|296106853|ref|YP_003618553.1| flagellar basal-body rod protein FlgG [Legionella pneumophila 2300/99 Alcoy] gi|53750969|emb|CAH12380.1| flagellar biosynthesis protein FlgG [Legionella pneumophila str. Paris] gi|53753997|emb|CAH15468.1| flagellar biosynthesis protein FlgG [Legionella pneumophila str. Lens] gi|148280581|gb|ABQ54669.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Corby] gi|295648754|gb|ADG24601.1| flagellar basal-body rod protein FlgG [Legionella pneumophila 2300/99 Alcoy] gi|307609979|emb|CBW99508.1| flagellar biosynthesis protein FlgG [Legionella pneumophila 130b] Length = 261 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 116/267 (43%), Gaps = 56/267 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ------ 54 GL AQ ++ ++T+A+N++N +T F+ + F +++ GA + Q Sbjct: 11 GLEAQ---DKNIATIANNLANVNTTAFKKGRALFEDLIYQNLRQAGAQSSQNSQIPTGIN 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 + VA+ K + GS +T LD A+EG +F + P G TRDG FK Sbjct: 68 MGTGVHLVATEKIF---SQGSLQNTQNALDVAIEGRGFFTVLMPDGTQAYTRDGSFKTDS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 G +V+++G YP+ ++P PQ +I +G G +S Q I Sbjct: 125 TGQIVNSNG-YPLQPNITIP---PQTTKI-TIGTDGTVSALVAGNNAPSVIGNIQLTDFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMG 211 GL + + + SG TP+ D G T+ +G LE SN N + E+ Sbjct: 180 NPAGLQPIGQNL-YTETVASG-------TPITDNPGNSGLGTLLQGSLEASNVNVVEELV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 MI Q+ IT + SML+ + Sbjct: 232 NMIQ-AQRSYEITAKSIQTVDSMLQYL 257 >gi|295700205|ref|YP_003608098.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] gi|295439418|gb|ADG18587.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] Length = 383 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 8/132 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 S+ GL+ A L + +N++N TVGF+ FS++ +GA N I ++ Sbjct: 2 SYQTGLSGLHAASNDLDVIGNNIANAHTVGFKQGTAVFSDMYANAMLGATNNQIGIGVAT 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A +++ G+ TG LD + G+ +F L + +R+G+F+ DG+++S+ Sbjct: 62 SAIVRDF---SEGTPTQTGNPLDLDIRGNGFFLLSQNGTPVYSRNGQFQQDSDGNIISSG 118 Query: 119 GKYPVLDMASVP 130 P++ A P Sbjct: 119 NGLPLMGYAEGP 130 >gi|157373206|ref|YP_001471806.1| flagellar basal-body rod protein FlgF [Shewanella sediminis HAW-EB3] gi|157315580|gb|ABV34678.1| flagellar basal-body rod protein FlgF [Shewanella sediminis HAW-EB3] Length = 244 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 10/215 (4%) Query: 23 ADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 A+N++N +T GF+ ++ + V+ A+ N + ++ + S + G+ TG LD Sbjct: 23 ANNLANAETTGFKADLERVNATVIPAMGNTLQTRV-MAQTQSSGFSHQSGALNPTGRTLD 81 Query: 82 FALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ F++ + +G TR G V D ++ G+ PV + PI +P+ E+F Sbjct: 82 LAIREQGLFSVMTEQGEAYTRSGTL-VPDTNGQLTIDGR-PVAGIDG-PIVLPEYRELF- 137 Query: 142 VGEKGEIS---QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 VG+ G IS +G + +G L V+ + + G+ + PL+ V V G Sbjct: 138 VGDDGRISVLAAEGGITEEVGQLKLVNPELDTMEKGLDGLFYSRDGQPLQANEQVKVDSG 197 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 FLE SN ++ E+ + L+++F L+ EK Sbjct: 198 FLESSNVKAVSELIASMDLSRQFEVQVKLMKSAEK 232 >gi|152997582|ref|YP_001342417.1| hypothetical protein Mmwyl1_3580 [Marinomonas sp. MWYL1] gi|150838506|gb|ABR72482.1| protein of unknown function DUF1078 domain protein [Marinomonas sp. MWYL1] Length = 565 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGA-IKNDIDQKISF 58 FN L+ A LS +N++N DT GF+ +++F + V+GA N+I +S Sbjct: 3 FNTALSGIKASADYLSVTGNNIANADTTGFKKSRIEFDDLYNTSVLGAGSGNNIGSGVSV 62 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +E+ S G+ T LD A++G +F +++ TR G FK+ ++G LV+ S Sbjct: 63 SKVSQEFSS---GNLSYTDNNLDLAIDGSGFFVIDAGIANAYTRAGNFKLDENGFLVTNS 119 Query: 119 GK 120 G Sbjct: 120 GN 121 >gi|300024588|ref|YP_003757199.1| flagellar hook-basal body protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526409|gb|ADJ24878.1| flagellar hook-basal body protein [Hyphomicrobium denitrificans ATCC 51888] Length = 417 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 11/122 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISF 58 M TS + G+A Q R+ TVADN++N +T G++ +F+ +V G + + + +S Sbjct: 7 MTTSIS-GMAVQ---SDRMGTVADNIANVNTTGYKEASAEFATLVAEGHVASYVPGSVST 62 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 +A + ++ + G T + D A+ G+ +F ++SP G LTR G F ++ +G LV+A Sbjct: 63 IA--RRAVTHQ-GDLSYTNSPTDLAVSGNGFFMVQSPSGTPYLTRAGSF-ISTNGELVNA 118 Query: 118 SG 119 +G Sbjct: 119 AG 120 >gi|221215571|ref|ZP_03588534.1| flagellar hook protein FlgE [Burkholderia multivorans CGD1] gi|221164559|gb|EED97042.1| flagellar hook protein FlgE [Burkholderia multivorans CGD1] Length = 413 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 16/141 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I +AS + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---- 119 + + G+ +T + LD A+ G+ +F + + I TRDG F+ +G +V++ G Sbjct: 66 QQFGQ--GTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLM 123 Query: 120 -----KYPVLDMA-SVPIQIP 134 K V++ A +VP+Q P Sbjct: 124 GYAADKNGVINTAQTVPLQAP 144 >gi|209964690|ref|YP_002297605.1| flagellar basal body rod protein FlgG [Rhodospirillum centenum SW] gi|209958156|gb|ACI98792.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] Length = 261 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 15/131 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 S +IG LA + + +++N++N T GF+ + +F ++ VG+ +D + Sbjct: 3 SLSIGATGMLAQQLNVEVISNNIANMTTTGFKRQRAEFQDLLYQNMRRVGSTSSDAGTVV 62 Query: 57 -------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 + V + Y E G+ TG LD A+ G +F +E P G TR G F++ Sbjct: 63 PSGVQIGAGVKTAAVYRINEQGNISVTGNALDLAINGQGYFQVELPDGQTAYTRAGSFQL 122 Query: 109 TDDGSLVSASG 119 +G++V+A G Sbjct: 123 NAEGTIVTADG 133 >gi|83589649|ref|YP_429658.1| hypothetical protein Moth_0797 [Moorella thermoacetica ATCC 39073] gi|83572563|gb|ABC19115.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 253 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 28/249 (11%) Query: 13 LALEQRLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKNDIDQKISF------VASG 62 L E R +++N++N T GF+ T++ F E++ + + +Q I V Sbjct: 13 LVQEMRQDVISNNLANATTGGFKSAVATVR-SFPEML-LQRLEKNQAIPIGPFSPGVMVD 70 Query: 63 KEYLSKEVGSFISTGTELDFALE------GDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 Y + E G TG D AL A+F + +P G TR+G+F+V G LV+ Sbjct: 71 NIYTNTEPGPLTETGHATDLALVQPGVGVSPAFFVVRTPGGEAYTRNGQFQVDPGGWLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 A G YPV I + D F V G I G+V+ + + + + ++R+ Sbjct: 131 AEG-YPVQGQNG-DIYVGTTD--FKVDAGGRILVNGQVVDQLRVVTF-ANPALLQRQGDT 185 Query: 177 I--SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + +P P + VK+G+LE+SN + E+ M+ + + + + +I ++++ Sbjct: 186 LFTAPGAQALPAANFQ---VKQGWLEESNVDLARELVDMLAVLRSYEANQKVIQTEDQTL 242 Query: 235 LEAIRNIAS 243 +++ + S Sbjct: 243 AKSVNEVGS 251 >gi|77463651|ref|YP_353155.1| flagellar proximal rod protein FlgF [Rhodobacter sphaeroides 2.4.1] gi|77388069|gb|ABA79254.1| flagellar proximal rod protein FlgF [Rhodobacter sphaeroides 2.4.1] Length = 251 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 18/210 (8%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASGKEYLSKEVGSFISTGTELD 81 A N++N GFR + D +F G S G TG +D Sbjct: 23 AQNLANQTVPGFRRDLTNEGDARFLKAMDAASARAFQTERGPHLFSSAPGLLNQTGEPMD 82 Query: 82 FALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP------ 134 A+ + WF ++ G L+R G ++T DG L++ +G+ +LD A PI++P Sbjct: 83 VAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNGAGEA-MLDPAMQPIELPPVRALI 141 Query: 135 --QKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 + I + G Q+ G +IAT V + + R +G P PP Sbjct: 142 VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTLRKDPDGRIRAGGEPLPPPD-----Q 196 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V +G LE SN N+M E+ I L + F Sbjct: 197 RARVLQGVLEGSNVNTMEELVSSIELQRTF 226 >gi|329929265|ref|ZP_08283018.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] gi|328936634|gb|EGG33077.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] Length = 274 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 48/278 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++ + Q +S V Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDI-------LSQTMSGVT 53 Query: 61 SGKEYLSKEV--------------------GSFISTGTELDFALEGDAWFAL---ESPRG 97 G + S V GS ++T D ++GD +F + E Sbjct: 54 PGTDDPSGGVNAKQIGLGVSIGSIDTLHTPGSAMTTNNPTDLRIDGDGFFMVKLSEDQEV 113 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----G 152 LTR G F V +LV++ G VLD A PIQ+ ++ F + + G I QK Sbjct: 114 PFLTRAGDFHVDVARNLVTSDGML-VLDSAGDPIQLDEEVTAFTIAQNGAIIQKMSDGTT 172 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV------------TVKRGFLE 200 + A +G+ + +G + + + P DL+ V + G LE Sbjct: 173 EEGAIIGVAKIPNPEGLEKIGGNMYRVTLNAVPDGDLAAVMFDGNNAEEGTGAIIAGQLE 232 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 SN + E +MI + F + + +I +++ + E + Sbjct: 233 MSNVDLTGEFSEMIVAQRGFQANSRIITTSDEVLQEVV 270 >gi|307731361|ref|YP_003908585.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1003] gi|307585896|gb|ADN59294.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1003] Length = 262 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/266 (24%), Positives = 112/266 (42%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG Y V+ I +P +G G + S + + TM L Sbjct: 121 QTNAQGQLVTSSG-YQVIP----AITVPSNATSLTIGSDGAVSISVAGSTNTQQLGTMQL 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G F +SG +PN+ L T+ +G++E SN N + E+ Sbjct: 176 ATFINPAGLDAKGENLFAETASSG-APNVAQPGLNGAG--TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|145298493|ref|YP_001141334.1| flagellar basal body rod protein FlgG [Aeromonas salmonicida subsp. salmonicida A449] gi|142851265|gb|ABO89586.1| flagellar basal body rod protein FlgG [Aeromonas salmonicida subsp. salmonicida A449] Length = 262 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + +S ++N++N TVG++ + F +++ N + S Sbjct: 11 GLDAQ---QTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADTELPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F + D+G+ Sbjct: 68 LGAGAKVVATQKNHGQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLNDEGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKG----KVIATMGLYSVDMSQ 167 +V+ YP+ IQIP+ + V G++S KG +V+ + L + Sbjct: 128 IVTPGNGYPL----QPEIQIPENAQSVTVSTDGQVSIQLKGDGASQVVGQINLSDFVNAS 183 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G F+ ++SG P+ ++G +K+G LE SN N E+ +I Sbjct: 184 GLQPMGENMFLETQSSG-------APIGGVAGADGLGVIKQGMLETSNVNVTEELVNLIQ 236 Query: 216 LTQKF 220 + + Sbjct: 237 AQRVY 241 >gi|311694362|gb|ADP97235.1| flagellar basal-body rod FlgF [marine bacterium HP15] Length = 250 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 65/278 (23%) Query: 1 MQTSFNIGL--AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 M + IG+ A Q L Q+ A+N++N T GF K D Q S Sbjct: 1 MDKALYIGMSGAKQNMLAQQAH--ANNLANVSTTGF--------------KKDFAQARSM 44 Query: 59 VASGKEYLSK------------EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGR 105 G+ + ++ G+ + TG +LD A+EG+ W A+++ +G + TR G Sbjct: 45 PVYGEHHPTRAYAMTERPGTDLSAGALMETGRKLDVAVEGEGWLAIQNDQGEEVFTRSGS 104 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG----LY 161 +V +G + A+G+ VL P+ +P D + +G G +S ++ G L Sbjct: 105 LQVDVNGLVRLANGEL-VLGNGG-PVALPPFDNV-EIGADGTVS----IVPVGGPPDQLV 157 Query: 162 SVDMSQ--------------GFVRRE-NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 VD + G +RR+ + + PP + V GFLE SN N+ Sbjct: 158 EVDRLKLVSPPPEALEKGLDGHMRRKPDQALDGPEPPD-----ANQRVASGFLESSNVNA 212 Query: 207 MYEMGQMIHLTQKFN---SITTLIDENEKSMLEAIRNI 241 + EM + L++++ + T +EN ++ ++N+ Sbjct: 213 VEEMISNLQLSRQYEMQVKVMTTANENSEATARLLQNL 250 >gi|269836597|ref|YP_003318825.1| hypothetical protein Sthe_0565 [Sphaerobacter thermophilus DSM 20745] gi|269785860|gb|ACZ38003.1| protein of unknown function DUF1078 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 259 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 22/154 (14%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEV---------VGAIKNDIDQKISFVASGKEYL 66 + RL VA+N++N T GF+ +V ++ G + + + V G Sbjct: 16 QARLDAVANNVANLGTTGFKAARVDMVDMPPQPLEVARAGGAADPVTEIGEGVTIGGISR 75 Query: 67 SKEVGSFISTGTELDFALEG-DAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPVL 124 E G+ TG LD A+ G + +F L +P G L TRDG+F+ G LV+ +G Sbjct: 76 VFEPGTPRPTGNPLDVAILGPNTFFVLTTPDGQTLYTRDGQFRPDSTGQLVTPAG----- 130 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 D S PI +P + E++ +G+++AT+ Sbjct: 131 DRLSPPITLPPGASVT------EVTPEGRILATL 158 >gi|258622490|ref|ZP_05717512.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM573] gi|258625232|ref|ZP_05720144.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM603] gi|258582479|gb|EEW07316.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM603] gi|258585190|gb|EEW09917.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM573] Length = 261 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G+AAQ + +++ +++N++N +T GF+ +V F ++ I+ N++ + Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTAGFKRDRVVFEDLFYNIQRQPGAQVDQVNELPTGVQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V G+ +T ELD A+ G +F +E+ G I+ TR+G+F V +G Sbjct: 68 LGSGVRVVGTQKVFTQGNAQNTAQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATM 158 +V++ G P+ IQIP ++G G +S Q G++ I Sbjct: 128 MVNSQG-LPL----EPQIQIPDNVVSLSIGVDGTVSATTAGDPAPQQLGQITLAKFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL +V + F + SG++ + +D +G ++K+G LE SN + EM MI + Sbjct: 183 GLEAVGGNL-FRETDASGLAEEL--VAGQDGTG-SIKQGALEGSNVQVVEEMVDMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|148256792|ref|YP_001241377.1| flagellar basal body rod protein FlgG [Bradyrhizobium sp. BTAi1] gi|146408965|gb|ABQ37471.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bradyrhizobium sp. BTAi1] Length = 262 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 50/261 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGA----------IKN 50 G+AAQ E + +++N++N T GF+ F ++ VGA + Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGFKKQTAAFQDLIYDHVRRVGAQSSDQGTILPVGI 66 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 DI + V + + S G+ TG LD A+ G+ +F + P G TRDG F++ Sbjct: 67 DIGGGVKTVGTPR---SMTQGTLSQTGNSLDLAISGEGFFKILMPDGTFQYTRDGTFQMD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKV 154 + G +V+A G PV I IPQ V +G++S Q + Sbjct: 124 NQGRIVTAQGN-PVQPT----ISIPQNASGITVNAQGQVSVTLPGSTTSNIVGQLQLTRF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQM 213 I GL V +Q F +SG P + + G+ ++ +G LE +N + + EM ++ Sbjct: 179 INKAGLQPVGNNQ-FTDTPSSG----APQDGVANQDGLGSITQGSLEQANVDVVSEMSEL 233 Query: 214 IHLTQKFNSITTLIDENEKSM 234 I + + +I ++ M Sbjct: 234 IAAQRAYEMNAKVISAADQMM 254 >gi|312884832|ref|ZP_07744524.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] gi|309367484|gb|EFP95044.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] Length = 261 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 G+AAQ + +++ +++N++N +TVGF+ +V F ++ GA +++++ S V Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYTIQRQPGAQVDEVNELPSGVQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 SG + + G+ +T +LD A+ G +F +E+ G I+ TR+G+F+V +G Sbjct: 68 LGSGVRVVGTQKVFTQGNTQNTNQDLDLAVMGKGFFQIENSDGQIMYTRNGQFQVNSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATM 158 +V++ G P+ IQIP +VG G ++ Q G++ I Sbjct: 128 MVNSQG-LPL----EPQIQIPDDALSISVGVDGTVTTTSAIDPTPQQVGQITLARFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL +V F + E SG++ + + ED G ++K+ LE SN + EM MI + Sbjct: 183 GLEAVG-GNLFRQTEASGLAEELIAS--EDGVG-SIKQRALEGSNVQVVEEMVDMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|302874613|ref|YP_003843246.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|307690776|ref|ZP_07633222.1| flagellar basal body rod protein FlgG [Clostridium cellulovorans 743B] gi|302577470|gb|ADL51482.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] Length = 254 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 117/251 (46%), Gaps = 23/251 (9%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV----------GAIKNDIDQK 55 L+ ++ E R++++++N++N +TVG+++ I F +V+ ++N++ Sbjct: 9 LSGMISKEARMNSISNNLANANTVGYKSDDLILKSFDQVLLENRGKKNGEAHVRNELGGL 68 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 V + Y G+ ST ++ D A+ GD +F +E TRDG F V G +V Sbjct: 69 SLGVELDETYTDYNQGTLESTDSQTDLAILGDGFFTVERNGNKFYTRDGNFSVDPQGYMV 128 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMS--QGFVRR 172 ++ G Y + + + +I + +V + G ++ G L VD + VR Sbjct: 129 NSKGDYLLGNNGN---RIYVANGKIDVKDNGVLTVDNGNTKVAYNLDVVDFADKNTLVRN 185 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ++ S P + VK+ LE SN N + M +M+ + ++F + +I ++ Sbjct: 186 GDNLYSGGNPTAATK----FNVKQRALEKSNVNVVNGMIEMMSVYREFETNQKVIQTLDE 241 Query: 233 SMLEAIRNIAS 243 ++ +++ + S Sbjct: 242 TLGKSVNQLGS 252 >gi|310764858|gb|ADP09808.1| Flagellar basal-body rod protein, FlgG [Erwinia sp. Ejp617] Length = 260 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +++N++N + GF+ + F +++ GA ++ Sbjct: 11 GLEAQ---QTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQTTLPTGMQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + ++ VA+ + + GS TG + D A++G +F ++ P G TRDG F + + Sbjct: 68 LGTGVATVATQRMHTQ---GSLTQTGRDYDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNE 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----I 155 +G +V+A G D I +P + VGE G ++ Q G++ I Sbjct: 125 NGQMVTAEGNPLQPD-----ITVPADAQKLTVGEDGIVTATVPGQAAPQQIGQLTLANFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL S+ + +V + SG +PN TP D +G +K ++E SN N E+ MI Sbjct: 180 NDAGLESLGGNL-YVETQASG-APN-EATPGMDGAG-RLKHQYIETSNVNVAEELVTMIQ 235 Query: 216 LTQKF 220 + + + Sbjct: 236 VQRAY 240 >gi|33592479|ref|NP_880123.1| flagellar hook protein FlgE [Bordetella pertussis Tohama I] gi|33572125|emb|CAE41667.1| flagellar hook protein FlgE [Bordetella pertussis Tohama I] gi|332381896|gb|AEE66743.1| flagellar hook protein FlgE [Bordetella pertussis CS] Length = 473 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 13/141 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K+S + Sbjct: 3 FGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQ--- 59 Query: 65 YLSKEVGSFISTGTELDFALEGDAWF--ALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 VG+ +TG E D A++G F + G+ +R+G F V + +V+A G Sbjct: 60 --RFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRL 117 Query: 120 -KYPVLDMASVPI--QIPQKD 137 YP + + P+ Q+PQ + Sbjct: 118 TGYPAGGVGAQPVDLQLPQGN 138 >gi|262276415|ref|ZP_06054224.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] gi|262220223|gb|EEY71539.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] Length = 262 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N TVGF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++ V G+ +T LD +EGD +F + P G I R+G+F + D+G Sbjct: 68 LGAGSKVVATQRVHTNGNVQTTNNALDLMIEGDGFFQILLPDGNIGYQRNGQFTLNDEGV 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V++ YP+ VP P ++ VG GE+S + + + + F+ Sbjct: 128 IVTSGAGYPLEPEIVVP---PDAIQV-TVGTDGEVSARLRGQQENAILGQITTVDFINP- 182 Query: 174 NSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P N+ PT P E + G+ +V++ LE SN N E+ MI + + Sbjct: 183 -GGLEPIGQNLYLPTGASGDPQEGVPGLDGLGSVRQSMLETSNVNVTEELVNMIEAQRVY 241 >gi|317010632|gb|ADU84379.1| flagellar basal-body rod protein [Helicobacter pylori SouthAfrica7] Length = 269 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 117/278 (42%), Gaps = 46/278 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ TI F + + + + Sbjct: 1 MQNGYYAVAGAMATQFNRLDLTSNNLANLNTNGFKRDDTITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y K +G+F T LDFAL + +FA+++ GI TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDKSLGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVP----IQIPQKDEIFNVGEKGEISQKGKV---- 154 DG F V DG LV+ +G + VL + + I + EI E+ Q G + Sbjct: 121 DGHFSVDKDGFLVTLNG-FKVLSRSGLNEQGGIMLMPNAEI-------EVDQNGGITFRD 172 Query: 155 ----IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANS 206 I L V S+ + I N+ E + V+ +++ LE SN N+ Sbjct: 173 NEAPIQAGALALVSFSEP---KNLKKIGQNLYAYQGEGIHQVSDSGALRQYMLEKSNVNA 229 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + EM +I + + + + ++ ++ M EAI +A+ Sbjct: 230 VREMSTLIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|167835113|ref|ZP_02461996.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis MSMB43] Length = 262 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 114/275 (41%), Gaps = 47/275 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y GS TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GSLQQTGNSKDVAINGQGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VI 155 RDG F+ G LV++SG Y V+ I +PQ +G G +S Q G I Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVIPA----ITMPQNATSLTIGSDGVVSVTQPGSNNAVQI 170 Query: 156 ATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 + + + G F +SG +PN+ L T+K+G++E SN N + Sbjct: 171 GALQIATFINPAGLDAKGENLFAETTSSG-APNVSQPGLNGAG--TLKQGYVESSNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E+ MI TQ+ I + ML+ + ++ Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMS 261 >gi|323495375|ref|ZP_08100452.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] gi|323310298|gb|EGA63485.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] Length = 262 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 48/260 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N TVG++ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I TR+G+F V D+G Sbjct: 68 LGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQFTVNDEGV 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V++ Y + I IP+ +G GE+S Q +V+ + +VD Sbjct: 128 IVTSGAGYAL----EPEIAIPEDAISVTIGTDGEVSVRVRGQQDNQVVGQIA--TVD--- 178 Query: 168 GFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 FV G+ P N+ PT P E + G V++ LE SN N E+ MI Sbjct: 179 -FVNP--GGLEPIGQNLYLPTGASGDPQEGVPGFDGFGEVRQSMLETSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 236 EAQRVYEMNSKVISAVDKMM 255 >gi|308061706|gb|ADO03594.1| flagellar basal-body rod protein [Helicobacter pylori Cuz20] Length = 269 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTDGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSM 207 G + L S + + I N+ E + + ++++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISDSGSLRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +AS Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|15611401|ref|NP_223052.1| flagellar basal-body rod protein [Helicobacter pylori J99] gi|4154843|gb|AAD05896.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99] Length = 269 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQEYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPNAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSDSGALRQSMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSTLIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|319764539|ref|YP_004128476.1| flagellar hook-basal body protein [Alicycliphilus denitrificans BC] gi|330826755|ref|YP_004390058.1| flagellar hook-basal body protein [Alicycliphilus denitrificans K601] gi|317119100|gb|ADV01589.1| flagellar hook-basal body protein [Alicycliphilus denitrificans BC] gi|329312127|gb|AEB86542.1| flagellar hook-basal body protein [Alicycliphilus denitrificans K601] Length = 426 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 21/170 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + N++N++TVGF+ + +F+ +V I ++G Sbjct: 3 FQQGLSGLNASSKNLDVIGHNIANSNTVGFKASRTEFASMVAT-------AIGTASTGNA 55 Query: 65 YLSKEVGSFIS---------TGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 + +VG+ TG LD A+ G+ +F ++ P G TR G FK+ D G++ Sbjct: 56 GIGVQVGAVAQQFTQGNITVTGNNLDVAINGNGFFKIQQPDGSFAYTRAGNFKLDDKGNV 115 Query: 115 VSASG----KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 ++ +G YP+ + + +F G Q + AT L Sbjct: 116 ITNNGGKVMGYPMDPITQTRTASTPQPLVFPTGAPIPAKQTTSIKATFNL 165 >gi|299822273|ref|ZP_07054159.1| flagellar hook protein FlgE [Listeria grayi DSM 20601] gi|299815802|gb|EFI83040.1| flagellar hook protein FlgE [Listeria grayi DSM 20601] Length = 411 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 32/179 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ +N + S + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKRQSVVFNDLL--YQNTLGSVTSGLY 58 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGR 105 +G +S GS +TG D AL+G+ +F G + TRDG Sbjct: 59 AGTNPMSFGSGTKIGAVITDYTAGSPTATGRNKDAALQGNGFFIAGDRSGGNAVYTRDGS 118 Query: 106 FKVTDDGSLVSASGKY----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 F V+ D L + SGKY V+D PIQIP I GE ++ K+ Sbjct: 119 FAVSSDNFLTTQSGKYVMGYATDKNGNVIDGNLRPIQIPLNSAI-----PGEATKNAKL 172 >gi|182680548|ref|YP_001834694.1| flagellar basal body rod protein FlgG [Beijerinckia indica subsp. indica ATCC 9039] gi|182636431|gb|ACB97205.1| flagellar basal-body rod protein FlgG [Beijerinckia indica subsp. indica ATCC 9039] Length = 262 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 44/244 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-GKEYL 66 G+AAQ + + +A+N++N +T F+ + +F++++ +++ VA+ G+ + Sbjct: 10 GMAAQ---DLNVQVIANNIANMNTTAFKRARAEFTDLLYQA-----ERLQGVANRGQSNM 61 Query: 67 SKE------------------VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 E G+ +TG +LD AL G WF + SP G + TR G F Sbjct: 62 IPEGAQLGLGVRTAAIRNLHVQGTLTNTGNKLDLALNGRGWFQVTSPEGETLYTRAGAFS 121 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIP----QKDEIFNVGEKGEIS--QKGKVIAT---- 157 G LV+ G Y V ++P + + +V G+ S Q G++ T Sbjct: 122 TNATGQLVTTDG-YLVNPNITIPTDATDVAVNQSGVVSVTRNGQTSAQQIGQLTLTNFAN 180 Query: 158 -MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 GL + R+ + +P + TP D+ T+ +G+LE SN + + E+ +I Sbjct: 181 EAGL--TPLGSNLYRQTEASGTP-VSGTP-GDIGFATINQGYLETSNVDPVKEITDLISA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRAY 240 >gi|88811801|ref|ZP_01127055.1| flagellar hook protein [Nitrococcus mobilis Nb-231] gi|88791192|gb|EAR22305.1| flagellar hook protein [Nitrococcus mobilis Nb-231] Length = 400 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SF L A L +N++N+ T GF++ + +F+++ VG + I Q + Sbjct: 2 SFETALTGLNAASADLDVTGNNVANSATTGFKSSRAEFADIYALSNVGTAQTSIGQGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A +++ G F TG LD A+ G +FAL + +R+G F++ DG +V A Sbjct: 62 AAVTQQFTQ---GQFDFTGNTLDLAVNGTGFFALNANGTTAYSRNGAFQLDRDGFIVDAD 118 Query: 119 GK 120 G Sbjct: 119 GH 120 >gi|238796904|ref|ZP_04640408.1| Flagellar basal body FlaE domain protein [Yersinia mollaretii ATCC 43969] gi|238719164|gb|EEQ10976.1| Flagellar basal body FlaE domain protein [Yersinia mollaretii ATCC 43969] Length = 407 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 75/143 (52%), Gaps = 18/143 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F+ GL+ A Q L V +N++N+ TVGF++ + F++V + + ++S V + Sbjct: 3 FSQGLSGLNAASQALDVVGNNIANSQTVGFKSGSIAFADVFAGSQVGMGVQVSSV--NQN 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------- 116 + +GS S+ LD ++G+ +F L + G + +R+G+FK ++G +++ Sbjct: 61 FSDGVLGSGASS---LDMGIQGNGFFRLTNEAGRVFYSRNGQFKQDENGFIINNQGMFLT 117 Query: 117 ---ASGKYPVLDMASV--PIQIP 134 ASG P + + PIQIP Sbjct: 118 GYQASGTPPAIQPGAAVGPIQIP 140 >gi|332994160|gb|AEF04215.1| flagellar basal body rod protein FlgG [Alteromonas sp. SN2] Length = 262 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/260 (21%), Positives = 117/260 (45%), Gaps = 43/260 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVASGKE 64 A + ++ V++N++N TVGF+ + F +++ N + S + SG + Sbjct: 14 AAQTDVAVVSNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADTELPSGLMLGSGSK 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 +S + G+ ++T LD +++G +F + P G I +R+G+F + D G +V++ Sbjct: 74 VVSTQKAHTQGNLLTTDNALDMSIQGRGYFEILQPDGTIAYSRNGQFSMNDQGQIVTSGA 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQG----- 168 + + + IP+ + + + GEIS + +V+ M L G Sbjct: 134 GF----LLQPEVAIPEDAQQITISQDGEISVSIRGQAEPQVLGQMNLSDFINPTGLQPIG 189 Query: 169 ---FVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 +V +SG P++ + G+ T+ +G LE SN N E+ +I + + Sbjct: 190 QNLYVETASSG-------APIQGVPGLQGIGTIAQGTLETSNVNVTEELVNLIESQRLYE 242 Query: 222 SITTLIDENEKSMLEAIRNI 241 + +I ++ + + I+ + Sbjct: 243 MNSKVISSVDQMLGQVIQQL 262 >gi|224370760|ref|YP_002604924.1| flagellar basal body rod protein FlgG [Desulfobacterium autotrophicum HRM2] gi|223693477|gb|ACN16760.1| FlgG2 [Desulfobacterium autotrophicum HRM2] Length = 260 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 38/221 (17%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFVASGKEYLS 67 VA+N++N+ T GF+ + F +++ G I I + SG + + Sbjct: 22 VANNLANSSTAGFKKSRANFQDLMYQTMLVAGATTPGGGQIPTGIQVGMGVRPSGVQKIF 81 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 + G + TG ELDF ++GD +F + + TR G F + +G + + SG D Sbjct: 82 TQ-GDYSQTGNELDFVIQGDGFFRVLHGDEELYTRAGNFTLDSEGFITTNSG-----DRL 135 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGK---VIAT-----------MGLYSVDMSQGFVRRE 173 I IP + + ++ + G ++ G ++AT GL++V + + R+ Sbjct: 136 QPEISIPVEATLISLQDNGTLTVTGADDTILATEQVNLSSFVNPAGLFAVGEN---LFRQ 192 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G P P + G TV FLE SN + + EM MI Sbjct: 193 TEGSGPATEGIPGDAPLG-TVANNFLEMSNVSVVEEMVNMI 232 >gi|33596140|ref|NP_883783.1| flagellar hook protein FlgE [Bordetella parapertussis 12822] gi|33573143|emb|CAE36790.1| flagellar hook protein FlgE [Bordetella parapertussis] Length = 473 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 13/141 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K+S + Sbjct: 3 FGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQ--- 59 Query: 65 YLSKEVGSFISTGTELDFALEGDAWF--ALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 VG+ +TG E D A++G F + G+ +R+G F V + +V+A G Sbjct: 60 --RFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRL 117 Query: 120 -KYPVLDMASVPI--QIPQKD 137 YP + + P+ Q+PQ + Sbjct: 118 TGYPAGGVGAQPVDLQLPQGN 138 >gi|197122873|ref|YP_002134824.1| hypothetical protein AnaeK_2470 [Anaeromyxobacter sp. K] gi|196172722|gb|ACG73695.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter sp. K] Length = 428 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 15/111 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISFVASGKEYLSKEVGS 72 LS V DN++N +TVGF++ + F + + G + + +++ V ++ L++ G+ Sbjct: 21 LSVVGDNIANANTVGFKSGRAAFEDALSQSVIGGTGQIGLGSRLAGV---QKILTQ--GA 75 Query: 73 FISTGTELDFALEGDAWFALESPR----GIILTRDGRFKVTDDGSLVSASG 119 STG D AL+G+ +F + G TRDG+F V DDG LV+ G Sbjct: 76 LASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGYLVNLEG 126 >gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] gi|254040055|gb|ACT56851.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 71 GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASGK--YP--VLD 125 G + TG LD AL G WF +E+P + ++ TR G F + G LV+A G P V+ Sbjct: 85 GEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIP 144 Query: 126 MASVPIQIPQKDEIFNV-GEKGEISQKGKV-----IATMGLYSVDMSQGFVRRENSGISP 179 + I++ + +I V G+ + G++ I GL ++ + R + P Sbjct: 145 EETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNI--GDNLLARTSVSGDP 202 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 I P +D+ VK+G+LE SN +++ E+ +MI + + + +I+ Sbjct: 203 -IISNP-DDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIE 249 >gi|220917665|ref|YP_002492969.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955519|gb|ACL65903.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 428 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 15/111 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISFVASGKEYLSKEVGS 72 LS V DN++N +TVGF++ + F + + G + + +++ V ++ L++ G+ Sbjct: 21 LSVVGDNIANANTVGFKSGRAAFEDALSQSVIGGTGQIGLGSRLAGV---QKILTQ--GA 75 Query: 73 FISTGTELDFALEGDAWFALESPR----GIILTRDGRFKVTDDGSLVSASG 119 STG D AL+G+ +F + G TRDG+F V DDG LV+ G Sbjct: 76 LASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGYLVNLEG 126 >gi|328958264|ref|YP_004375650.1| putative flagellar basal-body rod protein [Carnobacterium sp. 17-4] gi|328674588|gb|AEB30634.1| putative flagellar basal-body rod protein [Carnobacterium sp. 17-4] Length = 252 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/262 (22%), Positives = 125/262 (47%), Gaps = 39/262 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV----KFSEVVGAIKNDID--- 53 + +FNI L+++ ++ N++N +T G+++ ++ + SEV + N +D Sbjct: 8 LNNNFNI-------LQKKQENISANVANINTSGYKSQEIIQSTRASEV---MSNHLDGPF 57 Query: 54 ----QKISFVASGKEY--LSKEV--GSFISTGTELDFALEGDAWFALESPR-GIILTRDG 104 Q I G + +++ G +T + D A++GD +F +E+P G TR+G Sbjct: 58 LNQQQDIGDFTFGNQIDEIAQNFSQGGLKATASPTDIAIQGDGFFTVEAPNGGNYYTRNG 117 Query: 105 RFKVTDDGSLVSASGKYPVLDMA----SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 F V D G LV+ G Y VL S PIQ+ + F++ +G IS G ++ + Sbjct: 118 NFAVNDTGELVTQEG-YRVLGTTAGGQSSPIQVNGTE--FSIDNRGNISGTG---MSLMV 171 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + G R +G + + G +++ +LE SN ++ E+ ++ ++++F Sbjct: 172 TEFEDTAGLTR---TGDTLFTGQGGTVQIGGTVMQQSYLEASNVQTVDEITNLMQVSREF 228 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 + + ++++ +A+ + Sbjct: 229 EANQKALSAADETLRKAVNEVG 250 >gi|332673202|gb|AEE70019.1| flagellar basal-body rod protein [Helicobacter pylori 83] Length = 269 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAA 267 >gi|229189870|ref|ZP_04316880.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 10876] gi|228593544|gb|EEK51353.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 10876] Length = 267 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 41/241 (17%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------------KGKVIATM 158 D L ++SG Y V+D+ + I+IP+ E F V GEI + K VIA + Sbjct: 123 DRYLQTSSGAY-VMDVNNERIRIPENVEFF-VSNNGEIYREVNDGTLQKPDIKRIVIAQL 180 Query: 159 GLYSVDMSQG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 +VD V+REN + NI P + +G+ VK LE+SN + EM + Sbjct: 181 QTKTVDAETNARLVQRENKSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADL 237 Query: 214 I 214 + Sbjct: 238 M 238 >gi|15595119|ref|NP_212908.1| flagellar basal body rod protein FlgG [Borrelia burgdorferi B31] gi|195941595|ref|ZP_03086977.1| flagellar basal body rod protein FlgG [Borrelia burgdorferi 80a] gi|216264940|ref|ZP_03436932.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 156a] gi|221217835|ref|ZP_03589302.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 72a] gi|223889350|ref|ZP_03623936.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 64b] gi|224532949|ref|ZP_03673558.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi WI91-23] gi|224533277|ref|ZP_03673871.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi CA-11.2a] gi|225548956|ref|ZP_03769933.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 94a] gi|225549893|ref|ZP_03770854.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 118a] gi|226320636|ref|ZP_03796195.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 29805] gi|226321474|ref|ZP_03797001.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi Bol26] gi|3913655|sp|O51715|FLGG_BORBU RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|2688724|gb|AAC67132.1| flagellar basal-body rod protein (flgG) [Borrelia burgdorferi B31] gi|215981413|gb|EEC22220.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 156a] gi|221192141|gb|EEE18361.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 72a] gi|223885036|gb|EEF56140.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 64b] gi|224512113|gb|EEF82505.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi WI91-23] gi|224513442|gb|EEF83799.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi CA-11.2a] gi|225369352|gb|EEG98804.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 118a] gi|225370559|gb|EEG99995.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 94a] gi|226233270|gb|EEH32022.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi Bol26] gi|226233959|gb|EEH32681.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 29805] gi|312149206|gb|ADQ29277.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi N40] Length = 265 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 40/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATM 158 LV++ G Y VL P + Q + E+G +S K + I Sbjct: 128 LVTSQG-YKVLPNILFPEEYIQNS--ITISEEGIVSVKIDTSNEPIELGQIEISRFINPA 184 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + + +E +G I P + G +++G LE SN + EM MI + Q Sbjct: 185 GLSAIGSN---LFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVTMI-VAQ 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + + +ML N+ Sbjct: 240 RAYEINSKAIQTSDNMLGIANNL 262 >gi|296282279|ref|ZP_06860277.1| hypothetical protein CbatJ_01595 [Citromicrobium bathyomarinum JL354] Length = 269 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 3/108 (2%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE--VGSF 73 + L T+A N++N++T GF+ + +F+E+V + I + S E +++ +G Sbjct: 14 QSSLGTIAHNIANSETYGFKRGRTEFAEIVAGSALSNPRTIQGIGSSVEAITQNFSLGPI 73 Query: 74 ISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGK 120 TG+ LD A+ GD +F + G + TR G F + + G +V G Sbjct: 74 EQTGSALDMAITGDGFFTMRGENGGTLYTRAGSFTINESGGIVDNDGN 121 >gi|15606190|ref|NP_213567.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] gi|2983377|gb|AAC06963.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] Length = 262 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 43/237 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKIS-FV 59 G+ AQ + L ++ NM+N +TVG++ ++ F +++ GA + + S F Sbjct: 11 GMTAQ---QTNLDVISHNMANVNTVGYKKMRATFQDLLYQTVEEPGAPTSPTTRSPSGFQ 67 Query: 60 ASGKEYLSKEVGSFIS-----TGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 Y+S G F T +LD A++GD +F + P G I TR+G+F++ +G Sbjct: 68 IGLGTYVSDTYGIFTQGNLTKTDNQLDIAIQGDGFFKIVLPDGTIAYTRNGQFRLDSEGR 127 Query: 114 LVSASGKYPV-------LDMASVPIQIPQKDEIFNVGEKGEISQKGKV-----IATMGLY 161 +V++ G YP+ D SV I + G E+ + G++ + GL Sbjct: 128 IVNSDG-YPLDPEITIPADAISVSIAADGTVSVLRQGAT-EVEEVGRIELAKFVNPAGLR 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 + + +++ SG P+ D G T+ +G+LE SN N + EM +I Sbjct: 186 RIG-NNLYIQTTASG-------EPIIDNPGNQGLGTLLQGYLESSNVNIVEEMVNLI 234 >gi|224534580|ref|ZP_03675156.1| flagellar basal-body rod protein FlgG [Borrelia spielmanii A14S] gi|224514257|gb|EEF84575.1| flagellar basal-body rod protein FlgG [Borrelia spielmanii A14S] Length = 265 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 116/263 (44%), Gaps = 40/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDIAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATM 158 LV++ G Y VL P + Q + E+G +S K + + Sbjct: 128 LVTSQG-YKVLPNIFFPEEYIQNS--ITISEQGIVSVKIDNSNEPIELGQIEISRFVNPA 184 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + + +E +G I P + G +++G LE SN + EM MI + Q Sbjct: 185 GLNAIGSN---LFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVTMI-VAQ 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + + +ML N+ Sbjct: 240 RAYEINSKAIQTSDNMLGIANNL 262 >gi|218778846|ref|YP_002430164.1| flagellar basal body rod protein FlgG [Desulfatibacillum alkenivorans AK-01] gi|218760230|gb|ACL02696.1| Flagellar basal-body rod protein FlgG [Desulfatibacillum alkenivorans AK-01] Length = 260 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 37/255 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQKISFVASGKEYL 66 A + + V++N++N +T F+ + F + V GA Q + + G Sbjct: 14 AQQLNIDVVSNNLANINTTAFKRSRPDFQDLMYQTIRVAGATTTGGTQLPTGLQVGMGSK 73 Query: 67 SKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 V G + TG +LD+A+EG+ +F + S + TR G FK+ +G + +A+G+ Sbjct: 74 PTGVQKIFVQGDYSQTGNDLDWAIEGNGFFKVLSNNEEVYTRAGSFKIDSEGYITTAAGE 133 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV---IATM-----------GLYSVDMS 166 + A +P + +V G+++ G +AT GLYS+ + Sbjct: 134 RLQPEFA-----VPADAVLISVDSGGKLTAFGPANEEVATYDITLYDFANPAGLYSMGRN 188 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + E SG + TP ++ G T+ +GFLE SN N + EM MI + + + + Sbjct: 189 L-YKTTEASG--EEVEGTPGDEGFG-TISQGFLEMSNVNVVEEMVTMIIAQRAYEANSKA 244 Query: 227 IDENEKSMLEAIRNI 241 I + SML+ N+ Sbjct: 245 I-QTADSMLQIANNV 258 >gi|24374756|ref|NP_718799.1| flagellar basal body rod protein FlgF [Shewanella oneidensis MR-1] gi|24349420|gb|AAN56243.1|AE015761_13 flagellar basal-body rod protein FlgF [Shewanella oneidensis MR-1] Length = 247 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 35/221 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ A+N++N +T GF K+D+ Q S A G+ ++ Sbjct: 19 LALRANNLANANTDGF--------------KSDMAQARSMQAFGEGLPTRVFAMVETPSA 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G STG +LD A++GD WFA+++ G TR G G L + G PV+ Sbjct: 65 NFRSGPIKSTGRDLDVAIKGDGWFAVQAQDGSEAYTRSGSLSFDSTGLLHNDRGN-PVMG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMG-LYSVDMSQGFVRRENSGISP 179 A PI +P E + + G IS + + V+ +G L V+ + R G+ Sbjct: 124 DAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVVEEVGRLKLVNPGNAQMMRGEDGLFR 182 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P V+V+ G +E SN NS+ EM +I L ++F Sbjct: 183 LVSGDPAPADPSVSVESGAVEGSNVNSVDEMVSLIDLQRQF 223 >gi|126462483|ref|YP_001043597.1| hypothetical protein Rsph17029_1715 [Rhodobacter sphaeroides ATCC 17029] gi|126104147|gb|ABN76825.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 251 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 18/210 (8%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASGKEYLSKEVGSFISTGTELD 81 A N++N GFR + D +F G S G TG +D Sbjct: 23 AQNLANQTVPGFRRDLTNEGDARFLKALDAASARAFQTERGPHLFSSAPGLLNQTGEPMD 82 Query: 82 FALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP------ 134 A+ + WF ++ G L+R G ++T DG L++ +G+ +LD A PI++P Sbjct: 83 VAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNGAGEA-MLDPAMQPIELPPVRALI 141 Query: 135 --QKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 + I + G Q+ G +IAT V + + R +G P PP Sbjct: 142 VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTLRKDPDGRIRAGGEPLPPPD-----Q 196 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V +G LE SN N+M E+ I L + F Sbjct: 197 RARVLQGVLEGSNVNTMEELVSSIELQRTF 226 >gi|317013797|gb|ADU81233.1| flagellar basal-body rod protein [Helicobacter pylori Gambia94/24] Length = 269 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 115/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQEYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPDAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGIHQVSDSGALRQSMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|254994099|ref|ZP_05276289.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-064] Length = 208 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 32/166 (19%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A +Q LS ++N++N +T G++ V F++++ +N + + +G +S GS Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLL--YQNTMGSVAGGLYAGTNPMSFGSGSK 71 Query: 74 I-------------STGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSAS 118 I +TG D AL+G +F G I+ TRDG F V+D+ L + Sbjct: 72 IGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQ 131 Query: 119 GKY----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 GKY VL+ PIQIP I GE ++ G + Sbjct: 132 GKYVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|187918628|ref|YP_001884193.1| flagellar basal-body rod protein FlgF [Borrelia hermsii DAH] gi|119861476|gb|AAX17271.1| flagellar basal-body rod protein FlgF [Borrelia hermsii DAH] Length = 282 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 23/158 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKND--------------- 51 + +A RL +++N++N D G++ ++ F E++ ND Sbjct: 10 SGMMAQRHRLDVISNNLANIDLAGYKKDLSVHKAFPEMLIRRLNDDGLYKLPKGYLETAP 69 Query: 52 -IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 + + + V + Y S E G TG LD AL + +F +++P G TR+G F + Sbjct: 70 VVGKLGTGVEENEIYTSFEQGPLKITGNPLDLALTDEGFFVVQTPEGERYTRNGSFTLGP 129 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 +G LV+ G YPV+ I KD F + ++G+I Sbjct: 130 EGMLVTKDG-YPVIGEKG---HIYLKDNNFKITDQGQI 163 >gi|332162901|ref|YP_004299478.1| Lateral flagellar hook protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667131|gb|ADZ43775.1| Lateral flagellar hook protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863351|emb|CBX73474.1| flagellar hook protein flgE [Yersinia enterocolitica W22703] Length = 397 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 10/153 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A+ ++L+T+++N++N+ T GF++ + +F+ + Q + SG Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSGTKGFKSGRTEFASMYAQ-----SQPLGVGVSGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--- 119 K+ GS TG +D A+ G+ +F +++ G TR G F +G LV+ASG Sbjct: 57 SQSIKKDGSIDRTGNAMDLAISGNGFFVVKNSSGDEAYTRAGMFTTDKNGVLVNASGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP +V I +I VG + + K Sbjct: 117 QGYPADAAGNVQTGIVSDLKISTVGLPAKATSK 149 >gi|319781665|ref|YP_004141141.1| flagellar hook-basal body protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167553|gb|ADV11091.1| flagellar hook-basal body protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 419 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 22/123 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N+DT G++ +FS +V G + I Q +S Sbjct: 10 GVSGMNAQANRLSTVADNIANSDTTGYKRSSAEFSTLVMPSTGGAYNSGGVTTTIRQAVS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G T + D A+ GD +F ++ P G LTR G F G LV+ Sbjct: 70 -----------DPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPYLTRAGAFVPDGQGRLVN 118 Query: 117 ASG 119 ++G Sbjct: 119 SAG 121 >gi|312882657|ref|ZP_07742394.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] gi|309369618|gb|EFP97133.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] Length = 262 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 48/260 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N TVGF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I +R+G+F V D+G Sbjct: 68 LGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVNDEGI 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V++ Y + I IP+ VG GE+S Q +V+ + +VD Sbjct: 128 IVTSGAGYTL----EPEIAIPEDAISITVGTDGEVSVRVRGQQNNQVVGQ--ITTVD--- 178 Query: 168 GFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 F+ G+ P N+ PT P E + G V++ LE SN N E+ MI Sbjct: 179 -FINP--GGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 236 EAQRVYEMNSKVISAVDKMM 255 >gi|254251191|ref|ZP_04944509.1| flagellar hook protein FlgE [Burkholderia dolosa AUO158] gi|124893800|gb|EAY67680.1| flagellar hook protein FlgE [Burkholderia dolosa AUO158] Length = 413 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 76/144 (52%), Gaps = 16/144 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I +AS + Sbjct: 6 GLSGLAGASSALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTLASVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS------- 116 + ++ G+ +T + LD A+ G+ +F + + I TRDG F+ +G +V+ Sbjct: 66 QQFAQ--GTINTTNSSLDVAINGNGFFQMSNNGVITYTRDGTFQRDKNGYIVNSQGMNLM 123 Query: 117 --ASGKYPVLDMA-SVPIQIPQKD 137 A+G V++ A +VP+Q P + Sbjct: 124 GYAAGANGVINTAQTVPLQAPTTN 147 >gi|312884833|ref|ZP_07744525.1| putative flagellar basal-body rod protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367485|gb|EFP95045.1| putative flagellar basal-body rod protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 243 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 11/203 (5%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N+SN DT GFR + S V +K + V + + G + TG LD Sbjct: 23 ANNLSNADTAGFRADMERVSSV--PLKGAGFDGRTMVVTNSASTRFDAGDMVKTGRALDA 80 Query: 83 ALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ G+ +FA+++P G TR G KV + G+ V+ +G + D P+ +P +I Sbjct: 81 AIMGEGYFAVQTPNGEEAYTRAGNLKVDEFGA-VTVNGFAVIGDGG--PLVLPDYQKI-Q 136 Query: 142 VGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 + E+G IS G + GL V + +++ G+ ++ P + V V Sbjct: 137 ISERGVISLTPPGGGAEVNAGGLKLVKPEPNQLEKQSDGLLHSVTGNPFDADPLVQVAPE 196 Query: 198 FLEDSNANSMYEMGQMIHLTQKF 220 +E SN +++ E+ ++ L++ F Sbjct: 197 HIEGSNVSAIDELVNVMSLSRNF 219 >gi|307131608|ref|YP_003883624.1| flagellar basal-body rod protein flgF [Dickeya dadantii 3937] gi|306529137|gb|ADM99067.1| Flagellar basal-body rod protein flgF [Dickeya dadantii 3937] Length = 251 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 20/224 (8%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA LEQ+ T + NM+N T GFR V I+ ++ + V S + Sbjct: 11 AASQTLEQQAVT-SHNMANASTPGFRAQLSAMRAV--PIQGVTNETRTLVISSTPGVDTT 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 GS TG +D AL D W A+ S G TR+G ++ +G L + G + D Sbjct: 68 PGSMDYTGRSMDVALSQDGWLAVRSADGSEAYTRNGNMEINANGQL-TIQGNLVMGDGG- 125 Query: 129 VPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGF-VRRENSG---ISP 179 PI +P + ++ +G G I S + +G + + G V R + G +SP Sbjct: 126 -PIDVPPQTQL-TIGPDGTINALNPSDAANTVTQIGRLKLVKATGTEVTRGDDGLFRVSP 183 Query: 180 NIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 L++ + V V G LE SN N++ M +MI +++F Sbjct: 184 AAQQQRGAALQNDATVRVMPGVLEGSNVNTVESMVEMISNSRRF 227 >gi|327478810|gb|AEA82120.1| flagellar basal-body rod protein FlgF [Pseudomonas stutzeri DSM 4166] Length = 234 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 40/232 (17%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-------- 70 L ++N++N +T GFR D+++ + G Y S+ + Sbjct: 11 LQVRSNNLANVNTPGFRA--------------DLERAQAVAVEGYGYDSRHMALIENNGV 56 Query: 71 ----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G ++TG ELDFA++G+ LE G TR G +V +G L + +G+ VL Sbjct: 57 SLAAGPMVATGRELDFAVKGNGLIVLEDGEGEAYTRQGSMQVDAEGRL-TLNGR-AVLGE 114 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG----LYSVDMSQGFVRRENSGI---SP 179 PI +P+ D + +G G +S M + VD+ + + +G+ Sbjct: 115 GG-PIVLPEYDRM-EIGNDGTVSIMAPGDWMMAEVDRIRLVDVPAANLMKNQAGLLVTRD 172 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 P P ED V + GFLE SN +++ E+ + L + F + ++ E Sbjct: 173 GEPAQPSED---VRLASGFLESSNVSAIDELASTMSLNRLFETQVKMMKAAE 221 >gi|77359722|ref|YP_339297.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis TAC125] gi|76874633|emb|CAI85854.1| flagellar biosynthesis; hook protein [Pseudoalteromonas haloplanktis TAC125] Length = 454 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 15/128 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 SFNI L+ A ++ L+ A+N++N +T GF+ + +F++V G KN + Sbjct: 2 SFNIALSGLAAAQKDLNVTANNIANVNTTGFKESRAEFADVYASSVFSSGKTKNGDGVQT 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGS 113 + VA +++ GS T LD A+ G+ +FA G TR G FK+ D Sbjct: 62 TMVA--QQF---HQGSLQFTNNSLDLAITGEGYFATSQDLGAQDFTYTRAGAFKLNKDNF 116 Query: 114 LVSASGKY 121 +V A+G + Sbjct: 117 VVDANGSF 124 >gi|318604252|emb|CBY25750.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica Y11] Length = 397 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 10/153 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A+ ++L+T+++N++N+ T GF++ + +F+ + Q + SG Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSGTKGFKSGRTEFASMYAQ-----SQPLGVGVSGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--- 119 K+ GS TG +D A+ G+ +F +++ G TR G F +G LV+ASG Sbjct: 57 SQSIKKDGSIDRTGNAMDLAISGNGFFVVKNSSGDEAYTRAGMFTTDKNGVLVNASGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP +V I +I VG + + K Sbjct: 117 QGYPADAAGNVQTGIVSDLKISTVGLPAKATSK 149 >gi|317012196|gb|ADU82804.1| flagellar basal-body rod protein [Helicobacter pylori Lithuania75] Length = 269 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPDAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +K+ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSNSGALKQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|262396033|ref|YP_003287886.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|262339627|gb|ACY53421.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] Length = 243 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 42/233 (18%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----IDQKISFVASGKEYLS------- 67 ++ +++N++N +TVGF+ +V F ++ +I+ +DQ ++ V SG + S Sbjct: 1 MTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQ-VNEVPSGIQLGSGVRVVGT 59 Query: 68 KEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 ++V G+ +T ELD A+ G +F +E+ G I+ TR+G+F V +G +V++ G P+ Sbjct: 60 QKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQG-LPL 118 Query: 124 LDMASVPIQIPQKDEIFNVG----------------EKGEISQKGKVIATMGLYSVDMSQ 167 IQIP F+VG + G+I+ K I GL +V Sbjct: 119 ----EPQIQIPDNASSFSVGVDGTVTTTTADDPTPQQLGQIT-LAKFINPAGLEAVG--- 170 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G + RE P ED +G+ +K+G LE SN + EM MI + + Sbjct: 171 GNLFRETEASGPADELIAGEDGAGL-IKQGALEGSNVQVVEEMVDMITTQRAY 222 >gi|126653432|ref|ZP_01725528.1| flagellar basal-body rod protein [Bacillus sp. B14905] gi|126589788|gb|EAZ83921.1| flagellar basal-body rod protein [Bacillus sp. B14905] Length = 210 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 14/168 (8%) Query: 83 ALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 + G +F L P G TR+G F + G LV+ G Y VL+ A IQ+P D F Sbjct: 47 GVSGSIFFRLAHPDGGEAYTRNGNFTLDGQGYLVNGQGLY-VLNDAGQRIQLPNDD--FR 103 Query: 142 VGEKGEISQKGKVIATMGL-YSVD------MSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 + E G I + +A +G+ Y+ + G +R EN G+ N+P + T+ Sbjct: 104 LDESGAIYVNNQQVARVGVSYAANPNMLQKQDNGLIRTEN-GV--NLPSAYGANGVSFTL 160 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 ++ FLE SN +S M ++ + F + ++ ++SM +A+ I Sbjct: 161 RQNFLEGSNVDSGRAMTDLMTAYRAFEANQKVLQAYDRSMEKAVNEIG 208 >gi|92116936|ref|YP_576665.1| flagellar basal body rod protein FlgG [Nitrobacter hamburgensis X14] gi|91799830|gb|ABE62205.1| Flagellar basal-body rod FlgG [Nitrobacter hamburgensis X14] Length = 262 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 25/158 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------I 52 G+AAQ E + +++N++N T G++ + F ++ VGA +D I Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASDQGTILPVGI 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 D G L + G+ TG +LD A+ G+ +F ++ P G TRDG F++ + Sbjct: 67 DLGGGVKTVGTPRLMSQ-GTLSQTGNDLDIAIRGEGFFKIQMPDGTYQYTRDGTFQMDNQ 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G +V+A G PV I IPQ + +G++S Sbjct: 126 GRIVNAQGN-PVQPT----ITIPQNSAGITINAQGQVS 158 >gi|167568109|ref|ZP_02361025.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis EO147] gi|167574227|ref|ZP_02367101.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis C6786] Length = 262 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 47/275 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQSQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y G+ TG D A+ G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GALQQTGNSKDVAINGQGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-M 158 RDG F+ G LV++SG Y V+ I IPQ +G G +S Q G A + Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVIPA----ITIPQNATSLTIGSDGVVSVTQPGSNNAVQI 170 Query: 159 GLYSVDM--------SQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 G V ++G F +SG PN+ L T+K+G++E SN N + Sbjct: 171 GALQVATFINPAGLDAKGENLFAETTSSG-QPNVSQPGLNGAG--TLKQGYVEASNVNVV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E+ MI TQ+ I + ML+ + ++ Sbjct: 228 QELVNMIQ-TQRAYEINSKAVTTSDQMLQTVTQMS 261 >gi|119469950|ref|ZP_01612755.1| flagellar hook protein E [Alteromonadales bacterium TW-7] gi|119446660|gb|EAW27933.1| flagellar hook protein E [Alteromonadales bacterium TW-7] Length = 454 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 15/128 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 SFNI L A ++ L A+N++N +T GF+ + +F++V G KN + Sbjct: 2 SFNIALTGIAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSSGRTKNGDGVQT 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGS 113 + VA +++ GS T LD A+ G+ +FA+ G TR G FK+ D Sbjct: 62 TMVA--QQF---HQGSLQFTNNSLDLAITGEGYFAMSQDLGAQDFTYTRAGAFKLDKDNF 116 Query: 114 LVSASGKY 121 +V A G Y Sbjct: 117 VVDAKGNY 124 >gi|88799022|ref|ZP_01114603.1| Flagellar basal body rod protein [Reinekea sp. MED297] gi|88778249|gb|EAR09443.1| Flagellar basal body rod protein [Reinekea sp. MED297] Length = 247 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 23/216 (10%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTE 79 ++ ++N++N T GF+ + + + + +F + + G+ I TG E Sbjct: 20 TSHSNNLANARTFGFKADWAQARAI--PVWGEHHPSRAFSMTERPASDFNDGALIETGNE 77 Query: 80 LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE 138 LD A+ GD +FA+ G TR G F VT G L++ +G+ + + PI +P ++ Sbjct: 78 LDTAITGDGFFAVLDAEGQEAYTRRGDFSVTPLGELINGAGESVIGEGG--PIVLPPYEK 135 Query: 139 IFNVGEKGEISQK------GKVIATMGLYSVDMSQGFVRRENSGI------SPNIPPTPL 186 + G+ G IS + ++IA L V+ + + G+ +P +P PL Sbjct: 136 VEIAGD-GTISIRPAGAGPNEMIAVDALKIVNPNFQDFEKGTDGLFRPVEGAPILPDDPL 194 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 ++V GF+E SN NS++E+ ++ L +++ + Sbjct: 195 -----LSVVSGFVEASNVNSVHELTNLLALNRQYET 225 >gi|34558104|ref|NP_907919.1| flagellar basal body rod protein FlgG [Wolinella succinogenes DSM 1740] gi|34483822|emb|CAE10819.1| FLAGELLAR BASAL-BODY ROD PROTEIN DISTAL ROD PROTEIN [Wolinella succinogenes] Length = 263 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 47/257 (18%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDIDQKISFVASGKEYLSKEV 70 ++ ++N++N +T+G++ + +F+ E G+ ++ + + G + Sbjct: 18 QIDVTSNNIANVNTIGYKKQRAEFADLFYQVMEYAGSSTSETTLSPTGIEVGLGVRPTAI 77 Query: 71 ------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 G+F TG LD A+ G+ +F ++ P G TR+G FK D+G++V++ G + Sbjct: 78 TKIFSQGNFKETGNNLDIAITGNGFFQIQLPDGTTAYTRNGAFKPDDEGNIVNSDGYRLI 137 Query: 124 LDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-IATM----GLYSVDMSQG 168 + I IP+ N+G G E++ G++ IAT GL+S+ Sbjct: 138 PE-----ITIPEDATQINIGVDGTVSVLQGNQTEVNTIGQIEIATFINPAGLHSLG---- 188 Query: 169 FVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 +N ++ N P+ D G+ +++GF+E SN + EM +I + + + + Sbjct: 189 ----DNLYLNTNASGDPIVDTPGLNGFGQLRQGFVELSNVKLVEEMTDLITGQRAYEANS 244 Query: 225 TLIDENEKSMLEAIRNI 241 I + SML+ + ++ Sbjct: 245 KSI-QTADSMLQTVNSL 260 >gi|225619854|ref|YP_002721111.1| flagellar basal body rod protein FlgG [Brachyspira hyodysenteriae WA1] gi|225214673|gb|ACN83407.1| flagellar basal body rod protein FlgG [Brachyspira hyodysenteriae WA1] Length = 264 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 14/120 (11%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDID----QKISFVA 60 ++ + T+A+N++N +T+G++ ++ F +++ A ++ + Q V Sbjct: 14 GMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDTVTPVGLQTGLGVK 73 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS +TG +LD ALEG+ +F + P G + TRDG FK+ +G LV+++G Sbjct: 74 SAATQKMFDQGSLQATGNKLDLALEGEGFFQVLMPDGSVSYTRDGSFKIDANGQLVTSNG 133 >gi|52841453|ref|YP_095252.1| flagellar basal body rod protein FlgG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628564|gb|AAU27305.1| flagellar basal body rod protein FlgG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 261 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 116/267 (43%), Gaps = 56/267 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ------ 54 GL AQ ++ ++T+A+N++N +T F+ + F +++ GA + Q Sbjct: 11 GLEAQ---DKNIATIANNLANVNTTAFKKGRALFEDLIYQNLRQAGAQSSQNSQIPTGIN 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 + VA+ K + GS +T LD A+EG +F + P G TRDG FK Sbjct: 68 MGTGVHLVATEKIF---SQGSLQNTQNALDVAIEGRGFFTVLMPDGTQSYTRDGSFKTDS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 G +V+++G YP+ ++P PQ +I +G G +S Q I Sbjct: 125 TGQIVNSNG-YPLQPNITIP---PQTTKI-TIGTDGTVSALVAGNNAPSVIGNIQLTDFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMG 211 GL + + + SG TP+ D G T+ +G LE SN N + E+ Sbjct: 180 NPAGLQPIGQNL-YTETVASG-------TPITDNPGNSGLGTLLQGSLEASNVNVVEELV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 MI Q+ IT + SML+ + Sbjct: 232 NMIQ-AQRSYEITAKSIQTVDSMLQYL 257 >gi|332533174|ref|ZP_08409043.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas haloplanktis ANT/505] gi|332037456|gb|EGI73910.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas haloplanktis ANT/505] Length = 244 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 21/237 (8%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 Q L+ A+N++N +T GF K F++ + A + ++ F + + G + Sbjct: 14 QGLALKANNLANANTTGF---KADFAQARSMQAFGEGLPTRV-FSMQERPGSNMVSGGIV 69 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG +LD A+ +AW A++ G T+ G VT G LV++ G+ + + V + + Sbjct: 70 QTGRDLDIAMSDNAWLAVQDASGNEAYTKVGTLNVTAQGMLVTSHGRQVIGEGGPVILPV 129 Query: 134 P------QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 P +D V +G + + I T+ + + SQ + + N G+ ++ Sbjct: 130 PVEKIGFSQDGAIQVRPQGAPANFLEEIDTLRVVEANSSQ--LEKGNDGLFRPKANVTVD 187 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL------IDENEKSMLEAI 238 + V V G LE SN N ++EM MI ++F L IDE + +L + Sbjct: 188 TSANVKVLSGSLEMSNVNPVHEMVDMISHQRQFELQVKLMKTAEEIDERQDQLLRIV 244 >gi|315636316|ref|ZP_07891566.1| flagellar distal rod protein FlgG [Arcobacter butzleri JV22] gi|315479405|gb|EFU70088.1| flagellar distal rod protein FlgG [Arcobacter butzleri JV22] Length = 239 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 37/218 (16%) Query: 18 RLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISFVAS---------GKEY 65 RL +++N++N +T+GF+ T + F+ + +++ QK+ S Y Sbjct: 18 RLDQISNNLANVNTLGFKQEGTTETTFNYYLHKMESQ--QKLMLKESVVTNNIPKIDSRY 75 Query: 66 LSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 + E+G + TG LDFAL E D +F +++ G I+ TRDG FK DG LV ++G V Sbjct: 76 TNAEMGPIVMTGNSLDFALNEPDTFFKIQNENGDIVYTRDGAFKNL-DGFLVDSNGN-NV 133 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 L+ + I I E G SQ +G+ + +N+ + NI Sbjct: 134 LNADNEAIVI----------EDGFESQ-------IGVAKTPYTNLEKMGDNTYLVKNIDE 176 Query: 184 TP-LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +E+ G V RG +E SN NS+ M ++I ++F Sbjct: 177 AEQIENNDGKIV-RGAVEQSNVNSVTAMVELIDAHRRF 213 >gi|208434303|ref|YP_002265969.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|208432232|gb|ACI27103.1| flagellar basal-body rod protein [Helicobacter pylori G27] Length = 269 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDE 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPVLSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPDAAIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +K+ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSDSGALKQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|220930464|ref|YP_002507373.1| hypothetical protein Ccel_3101 [Clostridium cellulolyticum H10] gi|220000792|gb|ACL77393.1| protein of unknown function DUF1078 domain protein [Clostridium cellulolyticum H10] Length = 265 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 34/257 (13%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKISFVAS-------- 61 LA +++L + +NM+N +T ++ V F E++ ND + A Sbjct: 13 LANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTNPSAVVGTMELSS 72 Query: 62 --GKEYLSKEVGSFISTGTELDFALEGDAWFALESPR----GII----------LTRDGR 105 G+ Y G + TG D A++ D + SP G+I T++G Sbjct: 73 DVGEVYTYYTQGQMVQTGDRYDLAIKDDNTGEVASPAFFTVGVINPQDNTVQEFYTKNGS 132 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F + + LV+ G Y VL PI + D F V KG I Q G V+ T+ + Sbjct: 133 FSLDANNQLVTGDG-YAVLGKKG-PITLKTGD--FTVDSKGNIMQNGAVVDTLRIAQFAD 188 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 S + N+ + N + + SG TV +GF E SN N + EM MI + + + + Sbjct: 189 STQLRKLGNNLVMNN--GGEVAEFSG-TVIQGFDEQSNVNVIDEMVDMITVMRAYEANQK 245 Query: 226 LIDENEKSMLEAIRNIA 242 ++ + ++ +A+ I Sbjct: 246 VLQAQDGTLEKAVNEIG 262 >gi|127512280|ref|YP_001093477.1| flagellar basal body rod protein FlgF [Shewanella loihica PV-4] gi|126637575|gb|ABO23218.1| flagellar basal-body rod protein FlgF [Shewanella loihica PV-4] Length = 247 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 49/228 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ A+N++N +T GF K+D++Q S A G+ ++ Sbjct: 19 LAVRANNLANANTDGF--------------KSDLEQARSMQAFGEGLPTRVFSMTENPSA 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 G +TG +LD A++GD W A+++ G TR G G L + G PV+ Sbjct: 65 NFAAGPIKTTGRDLDIAVKGDGWIAVQAVDGGEAYTRSGSLSFDTSGLLRNDRGN-PVMG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSV--DMSQGFVR------R 172 A PI +P E + + G IS + +VI +G + +Q +R R Sbjct: 124 DAG-PIVLPLPIEKVEIAQDGTISVRPLGSTAEVIEEVGRIKLVNPGNQNLMRGEDGLFR 182 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + SG+ N P P V V+ G +E SN N++ EM +I L ++F Sbjct: 183 QLSGV--NAPADP-----NVAVESGAIEGSNVNAVDEMVSLIDLQRQF 223 >gi|315127352|ref|YP_004069355.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas sp. SM9913] gi|315015866|gb|ADT69204.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas sp. SM9913] Length = 247 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 33/243 (13%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 Q L+ A+N++N +T GF++ F++ + A + ++ F + + G + Sbjct: 17 QGLALKANNLANANTTGFKS---DFAQARSMQAFGEGLPTRV-FAMQERPGSNMTSGGVV 72 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG LD A+ +AW +++ G T+ G +T +G L ++ G+ + + V + + Sbjct: 73 ETGRSLDIAMSDNAWLSVQDASGNEAYTKVGSLNITAEGMLTTSDGRQVIGEGGPVILPV 132 Query: 134 PQKDEIFNVGEKGEISQKGKV-IATMG-----------LYSVDMSQGFVRRENSGISPNI 181 P EK E S+ G + + G L VD + + + N G+ Sbjct: 133 PI--------EKIEFSKDGTIQVRPQGAPANFLEEVDRLKVVDANNATLEKGNDGLFRAK 184 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL------IDENEKSML 235 P +E + V V G LE SN N ++EM MI ++F L IDE ++ ++ Sbjct: 185 PGQIVETSANVQVLGGTLEKSNVNPVHEMVDMISHQRQFELQVKLMKTAEEIDERQEQLM 244 Query: 236 EAI 238 + Sbjct: 245 RIV 247 >gi|210134550|ref|YP_002300989.1| flagellar basal-body rod protein [Helicobacter pylori P12] gi|210132518|gb|ACJ07509.1| flagellar basal-body rod protein [Helicobacter pylori P12] Length = 269 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y K +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDKSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPDAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|319649558|ref|ZP_08003714.1| flagellar hook protein [Bacillus sp. 2_A_57_CT2] gi|317398720|gb|EFV79402.1| flagellar hook protein [Bacillus sp. 2_A_57_CT2] Length = 268 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 114/269 (42%), Gaps = 36/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ + +L + +N++N +T G++ +V F ++V G+ +N Sbjct: 1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTFGYKKGRVNFKDMVSQTISGATGSGENSG 60 Query: 53 DQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + S + GS +TG LD ++GD + ++ TR G + Sbjct: 61 GINPKQVGLGSQLSSIDTIDTQGSLQTTGRVLDIGIQGDGYLMVQRGNNTYYTRAGNLYL 120 Query: 109 TDDGSLVSASG-KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV---IATMGLYSVD 164 DD +LV+ASG K D A++ + I ++ IS G + I Sbjct: 121 DDDANLVTASGDKIKGADGAAIQLNGGDATVIKSL----SISNDGTINFLIDGNDTLQAA 176 Query: 165 MSQGFVRRENSG----ISPN-----------IPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 G R N+G I N +P TP ED +G+ V G LE SN + E Sbjct: 177 GPIGIARFNNNGGLEKIGDNLYKDTVNSGDAVPLTPGEDGAGILVS-GTLEMSNVDLSEE 235 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +MI + F + T +I +++ + E + Sbjct: 236 FTEMITAQRGFQANTRIITTSDEILQELV 264 >gi|150019059|ref|YP_001311313.1| flagellar basal body rod protein FlgG [Clostridium beijerinckii NCIMB 8052] gi|149905524|gb|ABR36357.1| flagellar basal body rod protein [Clostridium beijerinckii NCIMB 8052] Length = 256 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 24/238 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEV--------VG--A 47 M F ++ +AL+ V +N++N + G++ K F +V VG Sbjct: 1 MIRGFYTSVSGLIALQNDQEVVTNNIANVNNTGYKKRELTKSSFEDVMISNRQKLVGDKY 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 +KNDI V G+F ST + DFA++G +F ++ + TRDG FK Sbjct: 61 VKNDIGNLNMGVKVNDVETVFTQGAFKSTDSMTDFAIDGRGFFVAQNGNKEVYTRDGNFK 120 Query: 108 VTDDGSLVSASGKYPVLDM-----ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 + + G L++ G VL + A PI + D F++ I+ +G V A L + Sbjct: 121 INNQGYLITNDGS-QVLGINNSTGAREPIYVG--DSKFSIDGDNNINIEG-VGAVDKLLT 176 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D Q + E G + + P+ + + V V++ FLE SN + E+ +++ + ++F Sbjct: 177 ADF-QNYNNLEPIGDNYSTMDNPIYN-AKVNVRQNFLESSNVDPSTELVKLMEIKRQF 232 >gi|288553056|ref|YP_003424991.1| flagellar basal body rod protein FlgG [Bacillus pseudofirmus OF4] gi|288544216|gb|ADC48099.1| flagellar basal body rod protein FlgG [Bacillus pseudofirmus OF4] Length = 279 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 37/270 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M S G++ + +L + +N+SN +T GF+ + FS++V GA ++ + Sbjct: 11 MLRSMYSGISGMRNFQTKLDVIGNNISNVNTAGFKKGRTTFSDMVSQQIAGASGPVVNGR 70 Query: 56 ISF----VASGKEYLSKEV----GSFISTGTELDFALEGDAWFAL---ESPRGIILTRDG 104 V G + + + GS +T LD + G+ +F L E+ +R G Sbjct: 71 GGTNPRQVGLGSQLATIDTIHTQGSLQNTNRSLDLGISGNGYFRLSDSETGGTTYYSRAG 130 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVP---IQIPQKDEIFNVGEKG---EISQKGKVIA-- 156 F + +DG +V+A+G Y + D S P IQI + F++G+ G I G++ + Sbjct: 131 NFYLDEDGYIVNANGLYLLDD--SDPGSRIQIAPDSQSFSIGQAGVVNVIDSAGQLTSPG 188 Query: 157 TMGLYSVDMSQGFVRR--------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 T+ L +G + +NSG + PT D +G V G LE SN + Sbjct: 189 TISLAYFSNPEGLQKEGDNLYQVTDNSGAAQRTTPT--NDGTGALVA-GTLEMSNVDLSE 245 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E +MI + F + T +I +++ + E + Sbjct: 246 EFTEMIVAQRGFQANTRIITTSDEILQELV 275 >gi|260437439|ref|ZP_05791255.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] gi|292810071|gb|EFF69276.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] Length = 284 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 20/160 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + + +A + + +++N++N ++ G++ +F ++ N D Sbjct: 1 MMRALYTAASGMIAQQTNVDVISNNLANVNSTGYKASTAEFKSLLYQTLQSRSTSANGDD 60 Query: 54 QKI-SFVASGKE------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 + I + V +G + S+ GS I + + F LEGD F L +P G I+ TR+G Sbjct: 61 KPIPAQVGTGARTAAITTHFSQ--GSLIDSTSTFAFGLEGDGLFGLMNPDGEIVYTRNGD 118 Query: 106 F---KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 F K D G ++ +S YPV+D PIQ + ++ N+ Sbjct: 119 FTVGKTNDGGFMICSSDGYPVVDSDGNPIQFSGEYDVSNL 158 >gi|224825779|ref|ZP_03698883.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] gi|224602003|gb|EEG08182.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] Length = 262 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 40/251 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---------VASGKE 64 A + RL +A+N++N +TVGF+ ++ F ++ ++ ++ + +G Sbjct: 14 AQDARLGAIANNLANVNTVGFKRDRMVFEDLFYQVERQPGARVDANNASPSGVQLGNGTR 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 L + GS +TG LD A+ G + ++ G TR G+ +V DG LV+A G Sbjct: 74 LLGTQKVFTSGSITTTGQALDVAIVGQGFLQVQMSNGETGYTRAGQLQVNSDGQLVNAQG 133 Query: 120 KYPVLDMASVP-IQIPQKDEIFNVGEKGEIS--QKGKVIAT-------------MGLYSV 163 P+ VP I +P ++GE G +S Q G T GL + Sbjct: 134 -LPI-----VPAITVPATATSVSIGETGTVSITQSGSTAQTEIGQLTLANFVNPTGLLA- 186 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + + +P + P D G +K+G LE SN + EM MI + + Sbjct: 187 -LGDNLFQETTASGTPTV-GNPGSDALG-KLKQGALEGSNVQVVEEMVDMIAAQRTYEMN 243 Query: 224 TTLIDENEKSM 234 T ++ + M Sbjct: 244 TKVLSAADNMM 254 >gi|170742312|ref|YP_001770967.1| flagellar basal body FlaE domain-containing protein [Methylobacterium sp. 4-46] gi|168196586|gb|ACA18533.1| flagellar basal body FlaE domain protein [Methylobacterium sp. 4-46] Length = 456 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 16/134 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT+ + GL AQ L+ ++ N++N T G+R I F++++ ND Q VA Sbjct: 7 MQTAVS-GLQAQ---AFSLNNISGNIANAQTTGYRRIDTTFADLLAEQPND-RQTSGSVA 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----------ILTRDGRFKVT 109 + ++ + G+ STG + AL G +F + +P + TR G F V Sbjct: 62 ASSQFTNTLQGNIASTGITTNMALNGGGFFVVRTPSATSGGQPSFTSQDLYTRRGDFAVD 121 Query: 110 DDGSLVSASGKYPV 123 DG LV+ +G Y V Sbjct: 122 KDGYLVNGAGSYLV 135 >gi|290893994|ref|ZP_06556969.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-071] gi|290556440|gb|EFD89979.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-071] Length = 411 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 28/164 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVAS---G 62 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + G Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGSKIG 73 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGK 120 GS +TG D AL+G +F G I+ TRDG F V+D+ L + GK Sbjct: 74 AILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGK 133 Query: 121 Y----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 Y VL+ PIQIP I GE ++ G + Sbjct: 134 YVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|134280876|ref|ZP_01767586.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 305] gi|125657219|gb|ABN48707.1| flagellar basal body rod protein [Burkholderia pseudomallei] gi|134247898|gb|EBA47982.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 305] Length = 241 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 12/207 (5%) Query: 19 LSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 ++ A+NM+N T GF +++ S+ V D ++ A+ L+ E G + TG Sbjct: 19 IAVHANNMANAQTDGFLAELEMAESQPVRGYGYDSRHLLNPRANA---LNGEAGVVVDTG 75 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ELD A+ G +F +++ TR G F++ DG+L + +G+ PV+ PI +P+ Sbjct: 76 RELDAAINGGGYFTVDAQGSEAYTRAGNFEIDADGAL-TVNGR-PVIGEGG-PIVLPEFT 132 Query: 138 EIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + +GE G IS +V A L VD + + +G+ PL + V Sbjct: 133 SL-RIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAGLLVARDGQPLPASNEVK 191 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKF 220 V G LE SN + + EM + L + F Sbjct: 192 VLGGHLERSNVSPVEEMIATMSLNRAF 218 >gi|68164544|gb|AAY87273.1| predicted flagellar basal body rod protein [uncultured bacterium BAC17H8] Length = 262 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 33/238 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--------SF- 58 GL AQ + R+ +A+N++N +T GF+ + F ++ ++ ++ SF Sbjct: 12 GLNAQ---QTRMQIIANNLANVNTTGFKRDRANFETLLYQVRRVAGDQVTAEANLTSSFS 68 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V +G ++ + GS I+T LD ALEG +F + P G + TR+G F +G Sbjct: 69 VGTGARIVNTQKAHTQGSLITTDNSLDLALEGGGFFQVLLPDGRVGYTRNGAFSTNSEGV 128 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS-------QKGKVIATMGLYS 162 L ++SG Y + ++P + Q +D I +V G I Q GL Sbjct: 129 LTTSSG-YVLQPEIALPDGVSQINISRDGIVSVLVAGGIGAEAVGQLQIADFTNRGGLQP 187 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + S +V + SG +P I P +D V +G LE SN N + E+ +MI + + Sbjct: 188 IGESF-YVETDTSG-AP-IVGNP-QDAGLGRVIQGALESSNVNVVTELVEMIETQRAY 241 >gi|257095358|ref|YP_003168999.1| flagellar basal-body rod protein FlgF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047882|gb|ACV37070.1| flagellar basal-body rod protein FlgF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 249 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 18/210 (8%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 VA N++N TVG+R ++ +F V + + + + V + + +E G+ STG LD Sbjct: 22 VAQNLANATTVGYRAMENRF-RAVPILGSGLATRAFAVDASVANVFQE-GALTSTGRPLD 79 Query: 82 FALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM--ASVPIQIPQKDE 138 A+ G W A++ P G TR G K +G L ++SG LD+ PI +P + Sbjct: 80 VAVRGQGWIAVQGPDGREAYTRAGNLKADANGVLQTSSG----LDVLGEGGPIALPPDNN 135 Query: 139 IFNVGEKGEISQKGKV-------IATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 I + G +S ++ + +G + V+ + + R + G+ P Sbjct: 136 IA-IAADGTVSAIPRLGAGAINNVNVVGRIKLVNPPESDLVRGDDGLFRTRDGVPAVADE 194 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 VT+ LE SN NS+ M +MI L ++F Sbjct: 195 TVTLAPEALEGSNVNSVDAMVRMISLARQF 224 >gi|330808196|ref|YP_004352658.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376304|gb|AEA67654.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 245 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 22/222 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A+Q AL QR A+N++N T GF+ + + V G D +F S + Sbjct: 12 ASQNALAQRAH--ANNLANISTNGFQKDLEQARSMPVFG----DSFPARAFAMSERPATD 65 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G+ + TG +LD A+ G W A+++P G R G V G L + +G PV+ Sbjct: 66 FTPGALVETGRDLDVAVSGPGWMAVQNPDGGESYVRTGSLNVDALGVLRAGNG-MPVMGN 124 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKG-----KVIA---TMGLYSVDMSQGFVRRENSGIS 178 PI +P + +I +G+ G IS + +V+A + L + D+ + S + Sbjct: 125 GG-PIAVPPEQKI-EIGQDGTISIRAMGEGPRVMAEVDRIKLVNPDLKNMTKGLDGSIRT 182 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P P++ + V + GF E SN N++ EM ++ L ++F Sbjct: 183 KDGQPAPID--ANVQLVSGFQEASNVNAVDEMTSVLALAKQF 222 >gi|300722680|ref|YP_003711970.1| flagellar basal-body rod cell-distal protein [Xenorhabdus nematophila ATCC 19061] gi|297629187|emb|CBJ89783.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Xenorhabdus nematophila ATCC 19061] Length = 260 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 107/231 (46%), Gaps = 38/231 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF--VASGKEYLSKE 69 + +A+N++N T GF+ +V E++ GA+ ++ S + +G ++ E Sbjct: 19 MDVIANNLANVSTSGFKRQRVVSEELIYQTERQPGAMSSEQTNLPSGLQIGTGARPVATE 78 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVL 124 G+ T D A++G +F ++ P G TRDG F+V +G LV+A G + V+ Sbjct: 79 RLHSQGNLAQTNNTKDVAIKGQGFFQIQMPDGTTGYTRDGSFQVDQNGQLVTAGG-FQVV 137 Query: 125 DMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----GLYSVDMSQGFVRRE 173 +P + +D I +V +G+ + Q G++ T GL S+ E Sbjct: 138 PAIIIPDNATKIGIARDGIISVNVQGQNAPQQVGQLTLTTFINESGLESIG--------E 189 Query: 174 NSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKF 220 N + N P+E+ G+ + +G++E SN N E+ MI + + + Sbjct: 190 NLYLETNSSGVPVENAPGINGTGLLYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|255521910|ref|ZP_05389147.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-175] Length = 411 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 28/164 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVAS---G 62 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + G Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGSKIG 73 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGK 120 GS +TG D AL+G +F G I+ TRDG F V+D+ L + GK Sbjct: 74 AILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGK 133 Query: 121 Y----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 Y VL+ PIQIP I GE ++ G + Sbjct: 134 YVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|254508453|ref|ZP_05120573.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus 16] gi|219548663|gb|EED25668.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus 16] Length = 262 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N TVG++ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I TR+G+F V D+G+ Sbjct: 68 LGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQFTVNDEGA 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V++ Y + I IP+ VG GE+S Sbjct: 128 IVTSGSGYNL----QPEIVIPEDAISITVGTDGEVS 159 >gi|157164118|ref|YP_001467097.1| flagellar basal-body rod protein [Campylobacter concisus 13826] gi|112799948|gb|EAT97292.1| flagellar basal-body rod protein [Campylobacter concisus 13826] Length = 269 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 121/267 (45%), Gaps = 50/267 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVG------AIKND 51 MQ + A + RL+ +++N++N +T+G++ V F+ + +KN Sbjct: 1 MQNGYYQATAGMVTQFNRLNVISNNLANVNTIGYKRNDVVIGDFARIFKETQDELPLKNH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 F+ +EY G F + LDFA++ DA+F +++P G+ L++ Sbjct: 61 TKDGAKFLNRTLDRVPQVSEEYTDFSAGGFKYSSNTLDFAIKREDAFFLVDTPNGVKLSK 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA---TMG 159 +G F + DG +V+ G Y VL P E N G++G +G+V+ Sbjct: 121 NGSFSLDGDGYIVTKEG-YRVL---------PSGYEAQNPGQRGIQVPQGEVLTGDKNGN 170 Query: 160 LYSVD-------MSQGFVRRENSGISPNIPPTP-LEDLSGV----TVKRGFLEDSNANSM 207 LYS + ++Q R+ + N+ T +D++ + +V +G+ + SN N + Sbjct: 171 LYSNNNQFSKFYIAQPREIRDLKKVGDNLFETRNFDDITELDEADSVMQGYAQMSNVNPV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM 234 EM +I TQ+ L+D +K M Sbjct: 231 LEMVGLIE-TQR------LVDMYQKVM 250 >gi|296127366|ref|YP_003634618.1| flagellar basal-body rod protein FlgG [Brachyspira murdochii DSM 12563] gi|296019182|gb|ADG72419.1| flagellar basal-body rod protein FlgG [Brachyspira murdochii DSM 12563] Length = 264 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 14/120 (11%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF-----VA 60 ++ + T+A+N++N +T+G++ ++ F +++ D + + V Sbjct: 14 GMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDTVRPVGLQTGLGVK 73 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS +TG +LD ALEG+ +F + P G + TRDG FK+ +G +V+++G Sbjct: 74 SASTQKMFDQGSLQATGNKLDLALEGEGFFQVLMPDGSVSYTRDGSFKIDANGQMVTSNG 133 >gi|114762164|ref|ZP_01441632.1| flagellar basal-body rod protein FlgG [Pelagibaca bermudensis HTCC2601] gi|114545188|gb|EAU48191.1| flagellar basal-body rod protein FlgG [Roseovarius sp. HTCC2601] Length = 261 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++AQ + R+ +++N+SN T G+ + +F+++ + + + A+ L Sbjct: 10 GMSAQ---QMRVEVISNNLSNMSTTGYNARRAEFADLH---YQQVARAGTVSAADGTMLP 63 Query: 68 KEV-----------------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 V G+ TG +LD A+EG +F + P + TRDG K Sbjct: 64 TGVQLGLGARPAAVTMKLAQGALSQTGGDLDLAIEGRGYFEVTLPSDLAGYTRDGALKRD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 +G +V++ G PV + I IP ++ +GEI + + +++ + L Sbjct: 124 GEGLIVTSDG-LPV----APEIVIPDDATSLSINAEGEIYAYFNDAVEAQLLGQLTLVGF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +G F E SG P I T +D G T + G+LEDS+ + +YE+ ++I Sbjct: 179 TNPKGLEAIGGNLFTETEASG--PPIQTTAGQDGLG-TFRHGYLEDSSVDPVYEITELIE 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRGY 240 >gi|219670131|ref|YP_002460566.1| hypothetical protein Dhaf_4121 [Desulfitobacterium hafniense DCB-2] gi|219540391|gb|ACL22130.1| protein of unknown function DUF1078 domain protein [Desulfitobacterium hafniense DCB-2] Length = 251 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 22/249 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV---GAIKNDIDQKISFVAS 61 G A LA + + +ADN++N T G++ + F E++ +N+I Sbjct: 8 GAAGMLAAQTQSEIIADNVANIRTPGYKGEESSNKAFPEMLMMRTNTENEIPGNTLIGGI 67 Query: 62 GKEYLSKEV------GSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSL 114 G + ++ G +T D AL + F +++P G TR+G+ ++ +G L Sbjct: 68 GTGVVVDQITRMNVQGVLQTTDIPTDLALTAEEVFLVVDTPNGERYTRNGQLQLNSEGML 127 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 +A G YPVL PI K+ F V +G I+ +G + + L + + G +R Sbjct: 128 QTADG-YPVLGEEG-PIGPLSKN--FQVDAQGGITDQGVTMDRLRLVQIP-AVGLLREGQ 182 Query: 175 SGISPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 S + N P++D +G V +G LE SN N +M +MI + + + + +I ++ + Sbjct: 183 SLYASN---QPVQDFAGNEAVLQGTLEGSNVNLPGQMVKMITVMRAYEANQKVIQTHDAT 239 Query: 234 MLEAIRNIA 242 + +A+ I Sbjct: 240 LEKAVNEIG 248 >gi|46906948|ref|YP_013337.1| flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. F2365] gi|47091659|ref|ZP_00229455.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 4b H7858] gi|217965205|ref|YP_002350883.1| flagellar hook protein [Listeria monocytogenes HCC23] gi|226223328|ref|YP_002757435.1| flagellar hook protein FlgE [Listeria monocytogenes Clip81459] gi|254824023|ref|ZP_05229024.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-194] gi|254853099|ref|ZP_05242447.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-503] gi|254932023|ref|ZP_05265382.1| flagellar hook protein FlgE [Listeria monocytogenes HPB2262] gi|300764509|ref|ZP_07074502.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N1-017] gi|46880214|gb|AAT03514.1| putative flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. F2365] gi|47019978|gb|EAL10715.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 4b H7858] gi|217334475|gb|ACK40269.1| flagellar hook protein [Listeria monocytogenes HCC23] gi|225875790|emb|CAS04493.1| Putative flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606448|gb|EEW19056.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-503] gi|293583575|gb|EFF95607.1| flagellar hook protein FlgE [Listeria monocytogenes HPB2262] gi|293593251|gb|EFG01012.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-194] gi|300514863|gb|EFK41917.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N1-017] gi|307570236|emb|CAR83415.1| flagellar hook protein [Listeria monocytogenes L99] gi|332311122|gb|EGJ24217.1| Flagellar hook protein FlgE [Listeria monocytogenes str. Scott A] Length = 411 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 28/164 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVAS---G 62 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + G Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGSKIG 73 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGK 120 GS +TG D AL+G +F G I+ TRDG F V+D+ L + GK Sbjct: 74 AILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGK 133 Query: 121 Y----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 Y VL+ PIQIP I GE ++ G + Sbjct: 134 YVMGYATDKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 172 >gi|167585196|ref|ZP_02377584.1| flagellar basal-body rod protein FlgG [Burkholderia ubonensis Bu] Length = 262 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 118/277 (42%), Gaps = 49/277 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T G++ + F +++ GA N Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGYKGSRAVFEDLLYQTIRQPGA--NSTQ 58 Query: 54 QK-----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILT 101 Q + VA+ + Y GS TG D A++G +F + P G T Sbjct: 59 QTELPSGLQLGTGVQQVATERLYTQ---GSLQQTGNSKDLAIDGAGFFQVLMPDGTNAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QK 151 RDG F+ G LV++SG Y VL I +PQ +G+ G +S Q Sbjct: 116 RDGSFQTNAQGQLVTSSG-YQVLP----AITVPQNATALTIGKDGVVSVKQAGSNNAVQI 170 Query: 152 GKV-IATM----GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 G + IAT GL + + F +SG +PN+ L ++ +G++E SN N Sbjct: 171 GSIQIATFINPAGLEAKGENL-FAETTSSG-APNVSQPGLNGAG--SLNQGYVEASNVNV 226 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + E+ MI TQ+ I + ML+ + + S Sbjct: 227 VQELVNMIQ-TQRAYEINSKAVTTSDQMLQNVTQMKS 262 >gi|157961173|ref|YP_001501207.1| flagellar basal body rod protein FlgG [Shewanella pealeana ATCC 700345] gi|157846173|gb|ABV86672.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] Length = 262 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 32/233 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + +S +++N++N TVGF+ + F ++ + A + +S Sbjct: 11 GLDAQ---QTDISVISNNVANASTVGFKKSRAVFEDLLYQNVNQAGGISASNTKLPNGLS 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + K ++E+ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGSGTKVVATQEIFTQGNMLTTDNSLDLLVEGPGFFEVQLPDGTAAYTRNGQFSLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQ 167 +V+ Y V I IP+ V +GE+S K +V+ + + Sbjct: 128 IVTPGSGYVV----QPAITIPEDATSITVSAEGEVSVKTPGNAENQVVGQLAISDFINPS 183 Query: 168 GF-VRRENSGISPNIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G +N + TP++ L G+ +++G LE SN N E+ +I Sbjct: 184 GLDPMGQNLYMETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|149911701|ref|ZP_01900309.1| flagellar basal-body rod protein FlgF [Moritella sp. PE36] gi|149805231|gb|EDM65248.1| flagellar basal-body rod protein FlgF [Moritella sp. PE36] Length = 247 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 36/236 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFV--ASGKEYLSKEVGSFI 74 L+ A+N++N +T GF K F + + A + ++ + + G+++ G+ Sbjct: 19 LAVRANNLANVNTHGF---KADFEQARSMQAFGEGLPTRVFAITESPGQDFTG---GALQ 72 Query: 75 STGTELDFALEGDAWFA-LESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG LD AL+GD W + L+ TR G ++ G L+++SG+ PVL + PI I Sbjct: 73 QTGNALDVALQGDGWLSVLDDKNNEGYTRSGSLHMSATGELLTSSGR-PVLG-ENGPIII 130 Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYSVD-----------MSQGF--VRRENSGISPN 180 P E + G I + + L VD + +G+ + R+ G Sbjct: 131 PTPIEQIQIHADGRIEIRPQGAPANALEQVDQLKLVNPDVRNLVKGYDGLFRQADGTPAV 190 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 + P V V G LE SN +++ E+ MI+L ++F ++ +EN+K+ Sbjct: 191 VDPN-------VQVAGGVLETSNVSAVGELTGMINLQRQFEMQIKMMKTAEENDKA 239 >gi|149191155|ref|ZP_01869413.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148834993|gb|EDL51972.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 261 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 75/137 (54%), Gaps = 18/137 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFV- 59 G+AAQ A +++ +++N++N +TVGF+ +V F ++ G ++++ + + Sbjct: 11 GMAAQDA---KMTAISNNLANINTVGFKRDRVVFEDLFYSVDKQAGTETTELNEHPTGIQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 +G + E G+ +T + D A+ GD +F +E+ G ++ TR+G+F+ DG Sbjct: 68 LGNGVRVVGTEKVFTQGNVQNTNQQFDLAILGDGFFQIENSDGELLYTRNGQFQTNSDGQ 127 Query: 114 LVSASGKYPVLDMASVP 130 LV+ G YP++ +P Sbjct: 128 LVNTQG-YPLIPEIVIP 143 >gi|289433975|ref|YP_003463847.1| flagellar hook protein FlgE, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170219|emb|CBH26759.1| flagellar hook protein FlgE, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634374|gb|EFS00969.1| flagellar hook protein FlgE [Listeria seeligeri FSL N1-067] gi|313639059|gb|EFS04046.1| flagellar hook protein FlgE [Listeria seeligeri FSL S4-171] Length = 411 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 34/167 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDI---DQKISFVASGK-- 63 A +Q LS ++N++N +T G++ V F++++ G++ + +SF + K Sbjct: 14 AFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAGTNPMSFGSGAKIG 73 Query: 64 ----EYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 +Y + GS STG D AL+G +F G I+ TRDG F V+D+ L + Sbjct: 74 AILTDYTA---GSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQ 130 Query: 118 SGKY----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 GKY VL PIQIP I GE ++ G + Sbjct: 131 QGKYVMGYATDKNGNVLSGNLQPIQIPLNSAI-----PGEATKTGSL 172 >gi|167574701|ref|ZP_02367575.1| flagellar hook protein flgE [Burkholderia oklahomensis C6786] Length = 395 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 14/122 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVASG 62 SFNI L+ A+ +L+T++ N++NT T GF++ + F+ +V GA N +++ S Sbjct: 2 SFNIALSGINAVNNQLNTISHNIANTGTYGFKSGRANFATMVAGAQPNG-----TYIGS- 55 Query: 63 KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSAS 118 +++ V GS + TG LD A++ D +F + G +L TR G F+ DG +V Sbjct: 56 ---ITQNVGIGGSIMKTGRGLDAAIQQDGFFVTKDADGSLLYTRVGIFQRAADGYMVDGF 112 Query: 119 GK 120 G+ Sbjct: 113 GR 114 >gi|288870659|ref|ZP_06114878.2| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] gi|288866377|gb|EFC98675.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] Length = 248 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 35/230 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV--- 70 A + L A+NM+N T G++ ++ F +++ + D V G + E Sbjct: 3 AFQSELDVTANNMANVSTPGYKVLRSSFDDLL-YTQMDTKNANQMVGHGVKTNGAETVFE 61 Query: 71 -GSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKV--TDDGSLVSASGKYPV 123 G F T ELDFA+ G A+FA+ES TRDG F++ TD+G+ ++ + V Sbjct: 62 QGIFEKTERELDFAILGKAYFAVESENEDAEEPYYTRDGSFQISATDEGNYLTTRDGHYV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 L I++ K + G+K E+ G + +GLY+ + G V + N Sbjct: 122 LSRDGDRIELEYKTVEESNGKKQFTNELDLSG-LSEVIGLYTCENPDGLVP-----VGKN 175 Query: 181 IPPT--------PLEDL----SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + T P+ED+ +G + G LE S S Y +MI+L Q Sbjct: 176 LYSTGAASGEWIPIEDMDETQAGSRLLTGTLELS---STYVPTEMINLLQ 222 >gi|326404069|ref|YP_004284151.1| flagellar basal-body rod protein FlgG [Acidiphilium multivorum AIU301] gi|325050931|dbj|BAJ81269.1| flagellar basal-body rod protein FlgG [Acidiphilium multivorum AIU301] Length = 260 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 41/249 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISF 58 + +I A + + +++N++N T G++ +V F +++ A N D + Sbjct: 3 ALDIAATGMQAQQTNVEVISNNIANMTTTGYKAQRVAFQDLLYQDLRRAGSNSSDAG-TI 61 Query: 59 VASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 V SG + Y + G+ T LD A+ G+ WF + P G TRDG F Sbjct: 62 VPSGTQIGLGVKTAAIYRIDQQGNLQQTNNTLDMAISGNGWFQVTLPSGQTAYTRDGTFG 121 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIA-TMGLYSVD 164 ++ +G++V+A G + IQIP + G ++S G+ T+G + Sbjct: 122 LSPNGTIVTADGY-----VVQPGIQIPTNATNVTINASGQVQVSLPGQTAPQTVGQLQLA 176 Query: 165 M--------SQG---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQ 212 + +QG F++ SG P T G TV +GF+E+SN N + E+ Sbjct: 177 VFPNDAGLAAQGGNLFLQTAASG----NPVTGAPSAPGFGTVMQGFVENSNVNVVSEVTD 232 Query: 213 MIHLTQKFN 221 +I + ++ Sbjct: 233 LITAQRAYD 241 >gi|261886055|ref|ZP_06010094.1| flagellar basal body rod protein FlgG [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 262 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 30/227 (13%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEY 65 +A + ++ T + N++N +T+G++ + +F++++ G + + + G Sbjct: 13 VAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTTMSPTGMEVGLGV 72 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + G F TG LD + G+ +F ++ P G TR+G FK+ DGS+V++ Sbjct: 73 RPTAITKVFGQGYFKETGNNLDMVIAGNGFFQIQLPDGTTAYTRNGAFKLDGDGSIVNSD 132 Query: 119 GKYPVLDMASVPIQIPQ----KDEIFNVGEKG--EISQKGKV-----IATMGLYSVDMSQ 167 G Y +L ++P Q D +V + G E++Q G++ I GL+++ Sbjct: 133 G-YRLLPEMNIPADATQISVGVDGTVSVLQPGNQEMTQIGQIELANFINPSGLHAMG-DN 190 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 F+ SG +PNI + +K+GF+E SN + EM +I Sbjct: 191 NFLETAASG-APNIGNGGTDGFG--QIKQGFVEMSNVQLVEEMTDLI 234 >gi|167567750|ref|ZP_02360666.1| flagellar hook protein flgE [Burkholderia oklahomensis EO147] Length = 395 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 14/122 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVASG 62 SFNI L+ A+ +L+T++ N++NT T GF++ + F+ +V GA N +++ S Sbjct: 2 SFNIALSGINAVNNQLNTISHNIANTGTYGFKSGRANFATMVAGAQPNG-----TYIGS- 55 Query: 63 KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSAS 118 +++ V GS + TG LD A++ D +F + G +L TR G F+ DG +V Sbjct: 56 ---ITQNVGIGGSIMKTGRGLDAAIQQDGFFVTKDADGSLLYTRVGIFQRAADGYMVDGF 112 Query: 119 GK 120 G+ Sbjct: 113 GR 114 >gi|291540627|emb|CBL13738.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4] Length = 272 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 47/267 (17%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-- 70 +A + + +++N+SN +TVG++ K++F + + I + + ++ +S +V Sbjct: 13 IAQQSNVDNISNNLSNVNTVGYKQEKMEFKSL---LYQTIQTRTTSANGEEKPISAQVGL 69 Query: 71 -------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF--KVTDDGSL 114 GS +++ DFA+ GD +FA+ G TR G F V G+L Sbjct: 70 GTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFVWSVNAGGTL 129 Query: 115 VSASGK-YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT--MGLYSVDMSQ--GF 169 + + YPVLD + PI +P EK +S+ GK+ T G Y VDM+Q G Sbjct: 130 TLCTNEGYPVLDSNNQPINLPAGIS----AEKVIVSENGKMGYTNAAGTY-VDMNQTIGL 184 Query: 170 VRRENSG-----------ISP----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + N G ++P + + +L+ V + +LE SN EM +I Sbjct: 185 FQFNNPGGLEKTGTNLLAVTPASGNAMNESTTANLTKSKVLQKYLEGSNVQVADEMVNLI 244 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + Q+ + + MLE N+ Sbjct: 245 -IAQRAYQLNSKAITTSDEMLEQANNL 270 >gi|264676571|ref|YP_003276477.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni CNB-2] gi|262207083|gb|ACY31181.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni CNB-2] Length = 246 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 14/229 (6%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR + +A N++N T GFR F V ++ F G Sbjct: 14 AAAQRQAVLAHNLANAGTNGFRAEMSTFRSV--PLQGSGAGTRVFALEATSGYQDTPGPA 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G AWFA++ G TR+G F+++ +G LV+++G+ VL PI Sbjct: 72 QRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA-VLSDGGAPID 130 Query: 133 IPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 IP + I ++G G ++ K + + L + + + VR ++ G L Sbjct: 131 IPPESTI-SLGSDGTLTAKMGNQLPVAVGRVKLVTPPVDEPLVRGDD-GFFRAAQGDALP 188 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 + + G +E SN NS+ M MI +++F L+ + N+KS Sbjct: 189 NDETARLLSGSIEGSNVNSVETMVGMIAASRQFEQQMKLLQTAETNDKS 237 >gi|330501138|ref|YP_004378007.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina NK-01] gi|328915424|gb|AEB56255.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina NK-01] Length = 243 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 38/245 (15%) Query: 7 IGLAAQLALEQRLSTV---ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +G A A + +S++ A+N++N +T GFR D++Q + G Sbjct: 4 LGYTAMTAASRTMSSLTVRANNLANVNTPGFRA--------------DLEQAQAVAVEGY 49 Query: 64 EYLSKEV------------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 Y S+ + G ++TG +LD A++G FA+E G TR+G +V Sbjct: 50 GYDSRHLARVKNNGVNLAPGELMATGRDLDVAIQGRGLFAVEGDDGAERYTRNGALQV-- 107 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM--GLYSVDMS 166 D L VL PI +P+ D + ++G G +S +G + + VD+ Sbjct: 108 DAELRLTLNGRAVLGEGG-PIVLPEYDSL-HIGRDGTVSVIPRGDFVTAEVDRIRVVDVD 165 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + ++ SG+ I P E L + G+LE SN ++ ++ + L + F + + Sbjct: 166 AADLTKDASGLLTRIDGQPAEGLDAPVLASGYLEASNVGAIDQLVATMSLNRLFETQVKM 225 Query: 227 IDENE 231 + E Sbjct: 226 MKAAE 230 >gi|90579911|ref|ZP_01235719.1| putative polar flagellar FlgG [Vibrio angustum S14] gi|90438796|gb|EAS63979.1| putative polar flagellar FlgG [Vibrio angustum S14] Length = 262 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 27/161 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ + +ST+++N++N TVGF+ + F ++ +I+Q Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGFKKGRAVFEDL---FYQNINQPGGQSTQDTTLPT 64 Query: 56 -ISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + A K +++V G+ +T +D +EGD +F + P G I TR+G+F + Sbjct: 65 GLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPDGNIGYTRNGQFTINS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +G LV++ YPV I +P VG GE+S + Sbjct: 125 EGQLVTSGSGYPV----QPEIVVPDDAVGITVGTDGEVSAR 161 >gi|83646789|ref|YP_435224.1| flagellar basal body rod protein [Hahella chejuensis KCTC 2396] gi|83634832|gb|ABC30799.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 235 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 12/235 (5%) Query: 10 AAQLALE---QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 A QL L +RL T++ N+SN ++ ++ + A + + F K++ Sbjct: 7 AIQLTLNADLERLRTISQNLSNQGAPAYKRDQMIVEKFQAAYLSGAKLEPEFSLQ-KDFT 65 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G+F TG +D AL+G+ + S TR G+ ++ DG L +G+ L Sbjct: 66 Q---GAFKLTGNAMDIALDGEGFLMASSSDKTFFTRKGQMRLNPDGYLGLVTGER--LLG 120 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 S PI + D F V G + Q G V+ + + + + + +G+ N Sbjct: 121 RSGPIALNDAD--FVVQPDGSVVQDGVVLDKLAVVTFQHPEQ-LSYAGAGLFENPTKQAP 177 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + +G V + +LE SN N+M E+ +++ LT+ + ++ + S+ AI + Sbjct: 178 TEATGAQVMQSYLEMSNVNTMEEIVRLVELTRHYQLSHNVLKAYDGSIDSAISTL 232 >gi|15644291|ref|NP_229343.1| flagellar basal-body rod protein FlgF [Thermotoga maritima MSB8] gi|170288995|ref|YP_001739233.1| hypothetical protein TRQ2_1206 [Thermotoga sp. RQ2] gi|281412685|ref|YP_003346764.1| flagellar basal-body rod protein FlgF [Thermotoga naphthophila RKU-10] gi|4982110|gb|AAD36610.1|AE001800_20 flagellar basal-body rod protein FlgF [Thermotoga maritima MSB8] gi|170176498|gb|ACB09550.1| protein of unknown function DUF1078 domain protein [Thermotoga sp. RQ2] gi|281373788|gb|ADA67350.1| flagellar basal-body rod protein FlgF [Thermotoga naphthophila RKU-10] Length = 249 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 107/229 (46%), Gaps = 29/229 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDIDQKISFVAS 61 +G+ +A +L +A++++N DT G++ + F EV N ++ + V Sbjct: 10 MGMLVDMA---KLDRIANDLANVDTAGYKQDREAFRAYLRREVFRQEPNPVESRTKKVPI 66 Query: 62 GK-EYLS--KEVGSFISTG------TELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 G EY + EV + +S G A+ G+ +F +E G TR+G F V +G Sbjct: 67 GPLEYATVLDEVRTDLSQGPVEETDVPYHLAINGEGFFRIEFNGGEYYTRNGEFTVNSEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDMSQGFVR 171 +V+ G Y +LD ++ F V E+G + G ++ +G+Y+++ + F Sbjct: 127 YIVTNYGGY-LLDENGERVRFFDD---FTVDEEGYVRDAYGNIVTRIGVYNLENPEKFGN 182 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +G + P+P E+ + +G++E SN +++ M MI + + Sbjct: 183 TLFTGEN----PSPSENFR---IMQGYVEKSNVDALKAMVDMISAMRHY 224 >gi|260767925|ref|ZP_05876859.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260615955|gb|EEX41140.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315179628|gb|ADT86542.1| flagellar basal-body rod protein FlgG [Vibrio furnissii NCTC 11218] Length = 261 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 117/242 (48%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ N++ + Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNELPTGVQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V G+ +TG +LD A+ G +F +E+ G I+ +R+G+F V +G Sbjct: 68 LGSGVRVVGTQKVFTQGNTQNTGQDLDLAVMGQGFFQIENSDGQIMYSRNGQFHVNSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 +V++ G P+ IQ+P +VG G ++ K I Sbjct: 128 MVNSQG-LPL----QPQIQVPDDAISLSVGVDGTVTITTAADSTPQELGQITLAKFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + F E SG + + ED G ++K+G LE SN + EM MI + Sbjct: 183 GLEALGGNL-FRETEASGAADELIAG--EDGVG-SIKQGVLEGSNVQVVEEMVDMITTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|153834448|ref|ZP_01987115.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156973589|ref|YP_001444496.1| flagellar basal body rod protein FlgG [Vibrio harveyi ATCC BAA-1116] gi|269961601|ref|ZP_06175963.1| flagellar basal-body rod protein FlgG [Vibrio harveyi 1DA3] gi|148869144|gb|EDL68176.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156525183|gb|ABU70269.1| hypothetical protein VIBHAR_01292 [Vibrio harveyi ATCC BAA-1116] gi|269833642|gb|EEZ87739.1| flagellar basal-body rod protein FlgG [Vibrio harveyi 1DA3] Length = 262 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + ++T+++N++N TVG++ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I TR+G+F + +G+ Sbjct: 68 LGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQFTLDGEGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 LV++ YPV I IP+ VG GE+S Sbjct: 128 LVTSGSGYPV----EPEIVIPEDAISITVGTDGEVS 159 >gi|104782843|ref|YP_609341.1| flagellar hook protein FlgE [Pseudomonas entomophila L48] gi|95111830|emb|CAK16554.1| flagellar hook protein FlgE [Pseudomonas entomophila L48] Length = 463 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKIS 57 SFNIGL+ A ++L +N++N +T GF++ + +F++V +G KN + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTNGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 +++ +V +TG LD ++G +F L + +R G F+ D +V++ Sbjct: 62 LANVSQQFGQGDVN---NTGNVLDMGIQGQGFFVLSDNGSLSYSRAGAFQTNKDNFVVTS 118 Query: 118 SG 119 G Sbjct: 119 DG 120 >gi|331269338|ref|YP_004395830.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] gi|329125888|gb|AEB75833.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] Length = 263 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 41/252 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV----------GAIKNDIDQ 54 GL Q A++ +++N++N TVG++ I KF +V+ ++NDI + Sbjct: 11 GLINQEAIQ---DVISNNLANATTVGYKKDDLITRKFKDVMLHNYDKVVRGKNVRNDIGE 67 Query: 55 KISFVASGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGI----ILTRDGRFKVT 109 +S + E + G TG DFA++G+ +F + + + TRDG F + Sbjct: 68 -LSMGSKIDETCTNYSQGVLNDTGKSTDFAIQGNGFFVVSRNGRVNNQNLYTRDGHFHID 126 Query: 110 DDGSLVSASGKYPV----LDMASVPIQI-----PQKDEIFNVGEKGEISQKGKVIATMGL 160 +G LV++SG + + A+ PI + P K ++GEI G+ M + Sbjct: 127 RNGYLVNSSGDKVIGRNLANGANSPINVLVNNSPAK---MACNDRGEIYLNGRPAFKMQV 183 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + +++ S P + V VK+ LE SN N M E+ M+ + F Sbjct: 184 VNFGDYKSLRKIQDNLYSGTNP----RETDNVIVKQNCLEKSNVNVMAEVSDMMMTMRNF 239 Query: 221 NS---ITTLIDE 229 S I +DE Sbjct: 240 ESNQKIVQALDE 251 >gi|74317650|ref|YP_315390.1| flagellar basal body rod protein FlgG [Thiobacillus denitrificans ATCC 25259] gi|74057145|gb|AAZ97585.1| flagellar basal body rod protein FlgG [Thiobacillus denitrificans ATCC 25259] Length = 260 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 114/262 (43%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + ++ +++N++N T GF+ + F +++ GA ++ Q S Sbjct: 11 GLDAQ---QTQMDVISNNLANVSTSGFKRARAVFEDLLYQTIRQPGAQSSEQTQLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G + ++ E G+ TG D A++G+ +F + P G TRDG F +G Sbjct: 68 IGTGVKPVATERIFTQGNLQQTGNAKDVAIQGNGFFQVLMPDGTTSYTRDGSFMADANGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVI-ATMGLYSVDMSQGFV 170 LV+ASG Y V I IP + +G G +S Q G T+G + M FV Sbjct: 128 LVTASG-YAV----QPAITIPADTQTLTIGRDGTVSVTQPGSATPVTIGTLQLAM---FV 179 Query: 171 RR-------ENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQK 219 EN TP G + +G++E SN N + E+ MI TQ+ Sbjct: 180 NPAGLQSLGENLYAETAASGTPSSSAPGSNGAGLLNQGYVETSNVNVVEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + + ML+ + + Sbjct: 239 AYEINSKAIQTSDQMLQRLTQL 260 >gi|38570329|gb|AAR24612.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni] Length = 270 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNSAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLKNSNAIRKGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|329849714|ref|ZP_08264560.1| flagellar basal-body rod protein FlgG [Asticcacaulis biprosthecum C19] gi|328841625|gb|EGF91195.1| flagellar basal-body rod protein FlgG [Asticcacaulis biprosthecum C19] Length = 263 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 121/265 (45%), Gaps = 43/265 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI---- 56 G+AAQ + + +++N++N +TVGF+ + +F +++ G+ +D + Sbjct: 10 GMAAQ---QLNVEVISNNIANMNTVGFKKQRAEFQDLLYQNIERMGSQSSDAGTVVPTGI 66 Query: 57 ---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + V +G Y + GS T + D A+EG +F + P G TR G F V D G Sbjct: 67 QVGAGVKAGSVYRIMQQGSMTLTQNQYDVAIEGKGYFQILMPSGETAYTRAGNFSVDDQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKVIATM------------ 158 LV+ G + + IPQ ++ + G+I +Q+G+ T Sbjct: 127 RLVTEDGY-----LVQPSVTIPQDAIDVSISKTGQIQATQQGQTAPTTVGQLQTATFFNE 181 Query: 159 -GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL ++ F+ SG +PN+ TP D+ T+ +G+ E SN +++ E+ +I + Sbjct: 182 AGLDAIG-DNLFLESGASG-APNV-STP-GDVGFGTLLQGYTEASNVDAVGEITALI-VA 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 Q+ + + + ML+ IA Sbjct: 237 QRAYEMNSKVITTADQMLQTASQIA 261 >gi|297379576|gb|ADI34463.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori v225d] Length = 269 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + ++ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISNSSALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAA 267 >gi|294635610|ref|ZP_06714087.1| flagellar hook protein FlgE [Edwardsiella tarda ATCC 23685] gi|291091062|gb|EFE23623.1| flagellar hook protein FlgE [Edwardsiella tarda ATCC 23685] Length = 411 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 18/143 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F+ ++ A +L + +N++N+ TVGF++ V F+++ K + ++ + ++ Sbjct: 3 FSQAISGMNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSK--VGLGVTVASVNQD 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY-- 121 + + G+ +T LD A+ G +F ++ P G + TR+G+F G L +A G Y Sbjct: 61 F---KDGTTTTTNRGLDVAISGQGFFRMQDPNGSVYYTRNGQFSKDAKGFLTNAQGMYLT 117 Query: 122 --------PVLDMAS--VPIQIP 134 P + + VPIQIP Sbjct: 118 GYPASGTPPTIQQGADPVPIQIP 140 >gi|254779049|ref|YP_003057154.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Helicobacter pylori B38] gi|254000960|emb|CAX28904.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Helicobacter pylori B38] Length = 269 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPDAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +K+ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYIYQGEGVHQVSDSGALKQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|226315010|ref|YP_002774906.1| flagellar hook-basal body protein [Brevibacillus brevis NBRC 100599] gi|226097960|dbj|BAH46402.1| putative flagellar hook-basal body protein [Brevibacillus brevis NBRC 100599] Length = 276 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 109/252 (43%), Gaps = 36/252 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND------------ 51 S NI +A ++Q L A+N+SN DT+G++ FSE++ N+ Sbjct: 3 SLNISTSAMRGIQQALDNTANNLSNIDTIGYKRRVASFSELLTDSMNEQPATDNQNRNTP 62 Query: 52 IDQKISFVAS-GKEYLSKEVGSFISTGTELDFALEGDAWF----ALESPRGIIL------ 100 + +I A G L GS T D +EGD +F ++ I + Sbjct: 63 MGIRIGSGAHLGMTKLDLGQGSLKQTDVPTDVLIEGDGYFLVTRKIKDANNITVDEESRF 122 Query: 101 TRDGRFKVT---DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-KVIA 156 TR+G FK++ D G ++ S + + D I P+ + ++ G S G Sbjct: 123 TRNGSFKLSYDDDKGYVLHTSSGHILTDENGANIVFPEPVKNISISPDGTFSADGMPAPV 182 Query: 157 TMGLYSVD-------MSQGFVRRENS-GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 +G++ V+ + + E + G P T D +GVT+++G LE SN + Sbjct: 183 KIGVWDVENPDQLKQVGENLFDAELAFGAGPQSKYTSAYD-NGVTLRQGALESSNVSMTE 241 Query: 209 EMGQMIHLTQKF 220 EM Q++++ + + Sbjct: 242 EMSQLVNIQRAY 253 >gi|225850267|ref|YP_002730501.1| flagellar basal body and hook protein FlgE [Persephonella marina EX-H1] gi|225644919|gb|ACO03105.1| flagellar basal body and hook protein FlgE [Persephonella marina EX-H1] Length = 540 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 70/129 (54%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQKI 56 M SF G A A + LS ++DN++N +T+GF+ +V F +++ + N+ + + Sbjct: 1 MIQSFYTGNAGLNANKNWLSVISDNIANVNTIGFKAERVNFEDLISSSLTTFANNSPKNM 60 Query: 57 -----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 SFV S + S+ G+ ++T T D AL+G+ +F + + + TR G+F+ Sbjct: 61 EIGGGSFVGSTTKDFSQ--GALMNTNTPTDLALDGEGFFMVRDAQDVTYYTRAGQFRTDA 118 Query: 111 DGSLVSASG 119 +G L++ +G Sbjct: 119 NGDLINLNG 127 >gi|15645706|ref|NP_207883.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori 26695] gi|2314244|gb|AAD08138.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori 26695] Length = 269 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ GI TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPDAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAA 267 >gi|304321133|ref|YP_003854776.1| flagellar basal-body rod protein FlgG [Parvularcula bermudensis HTCC2503] gi|303300035|gb|ADM09634.1| flagellar basal-body rod protein FlgG [Parvularcula bermudensis HTCC2503] Length = 251 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 42/249 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEY- 65 A + R+ +A+N++N T + F++++ GAI + + + V +G + Sbjct: 3 AQQTRVDVIANNIANMSTTAYAARSAVFADLIYRQDVNPGAISS---TQGTIVPTGVQLG 59 Query: 66 ---------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 + G+ T +LD A+EG+ +F + P G +RDG+F+V DG +V Sbjct: 60 LGVQTQAVSMDMRQGALRQTTNDLDIAIEGNGFFEITLPNGEPAFSRDGKFEVDPDGLMV 119 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYS------V 163 ++ G + + D I IP++ + GE+ + +G+ I T+ L S + Sbjct: 120 NSDG-FALAD----GITIPREARQVTISADGEVFAFFDDAVEGQSIGTITLTSFVNPKGL 174 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF--- 220 + G + RE + I P +D G+ +++G+LE+S + + E+ +I + + Sbjct: 175 EAMGGNLYRETTASGTPINGQPGQDGLGL-LRQGYLEESGVDVVSEIADLIEAQRGYELN 233 Query: 221 NSITTLIDE 229 + + T DE Sbjct: 234 SKVLTAADE 242 >gi|222824020|ref|YP_002575594.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] gi|222539242|gb|ACM64343.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] Length = 269 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 123/275 (44%), Gaps = 40/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVG--AIKND 51 MQ + A + RL V +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGAMVTQFNRLDVVTNNLANVNTSGYKRDNVVIADFKRIFKETQDELPIQNH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + Y + VGS T LD AL D ++ +++ G I LT Sbjct: 61 TRDAARFVNTTIDRVPQVNHVYTNFSVGSMKMTHNPLDLALTREDTFYLIKTNNGEIRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ ++G LV+ G Y VL D + P I+I NV + G +S + I Sbjct: 121 QDGNFQLDEEGYLVNRQG-YRVLSSDYFNNPENDGIRIGNSTSFINVDKNGIVSASNQNI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL-SGVTVKRGFLEDSNANSMYEM---- 210 A + + VD + + ++ ++ + DL + +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDLRDLQKDGDNMYKVDL--NKVRDLPNSNAIRQGFTQGSNVNPVTEMVGLI 237 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T+ +D+ + EAI +AS Sbjct: 238 EANRMVEMYQKV--MTSHMDDLNQ---EAINKLAS 267 >gi|269792757|ref|YP_003317661.1| flagellar basal-body rod protein FlgG [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100392|gb|ACZ19379.1| flagellar basal-body rod protein FlgG [Thermanaerovibrio acidaminovorans DSM 6589] Length = 262 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 34/242 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GA-------IKNDID 53 G +A + L V+ N++N +T GF+ ++ F +++ GA + N I Sbjct: 8 GATGMIAQQTNLDVVSHNLANVNTAGFKKLRADFQDLMYQIDREPGAPVEPASMVPNGIQ 67 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 + SG + + G+ TG D A+EGD +F + P G + TRDG +++ +G Sbjct: 68 VGLGSRVSGTSRIMGQ-GNMQVTGNPTDVAIEGDGFFQVTMPDGTVAYTRDGAWRIDGNG 126 Query: 113 SLVSASGKYPVLDMASVP-----IQIPQKDEIF-------NVGEKGEISQKGKVIATMGL 160 +V+A G Y + +VP I I ++ N E G+I Q + + GL Sbjct: 127 QIVTADG-YLLEPAVTVPNNAKEIIISPTGQVSVLLPGDQNPQEIGQI-QLARFVNPGGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ + F+ SG I P E+ G T++R LE +N + EM MI + + Sbjct: 185 KALGKNL-FIETPASGAP--IVGNPGEEGLGTTIQR-TLEMANVQVVEEMVNMIVAQRAY 240 Query: 221 NS 222 + Sbjct: 241 EA 242 >gi|308050023|ref|YP_003913589.1| flagellar basal-body rod protein FlgF [Ferrimonas balearica DSM 9799] gi|307632213|gb|ADN76515.1| flagellar basal-body rod protein FlgF [Ferrimonas balearica DSM 9799] Length = 242 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 24/163 (14%) Query: 70 VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G +TG LD A++GD W +++ G TR G + DG V+ G+ VL + Sbjct: 68 AGELNATGRTLDVAIQGDGWLTVQTADGEAYTRAGAMVLDADG-FVTIDGR-AVLGLDG- 124 Query: 130 PIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSV---------DMSQGFVRRENSGI 177 PIQ+P+ E+ N+GE G IS +G +I +G + + G +R + I Sbjct: 125 PIQLPEYREL-NIGEDGTISLLPAEGGLIEEVGQLKLVNPEGNALEKGTDGLMRLRDGEI 183 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +P V + GFLE SN ++ E+ + L+++F Sbjct: 184 APQDEA--------VQLASGFLEGSNVTAVEELLASMSLSRQF 218 >gi|157373205|ref|YP_001471805.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] gi|157315579|gb|ABV34677.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] Length = 261 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 38/249 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ G ++++ Sbjct: 1 MQSALWVSKTGLTAQDVKMTTIANNLANVNTTGFKRDRVAFNDLFYQTQRQPGGQVDELN 60 Query: 54 QKIS---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRD 103 + S V + K + S G ++T +LD A+EG +F +E G + +RD Sbjct: 61 ELPSGLQLGTGTRVVGTQKIFTS---GDMLTTNQQLDLAIEGQGFFQIEEANGDLAYSRD 117 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK------GKVIA 156 G+F DG +V++ G + VP I+IP+ + G ++ + + + Sbjct: 118 GQFYRNSDGLMVTSQG------LPLVPNIEIPEDALTITIATDGIVTAQISGQAEAQELG 171 Query: 157 TMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMG 211 + L + G R +N +E ++G +++G LE +N N + EM Sbjct: 172 QITLVNFTNPTGLEARGDNLYRETGASGAAIEGVAGDQAIGQLRQGALEGANVNVVEEMV 231 Query: 212 QMIHLTQKF 220 +MI + + Sbjct: 232 EMISTQRAY 240 >gi|288940410|ref|YP_003442650.1| flagellar basal-body rod protein FlgF [Allochromatium vinosum DSM 180] gi|288895782|gb|ADC61618.1| flagellar basal-body rod protein FlgF [Allochromatium vinosum DSM 180] Length = 246 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 17/220 (7%) Query: 25 NMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL 84 N++N +T GFR + ++ + +V G + L G+ ST +LD A+ Sbjct: 25 NLANANTTGFR--QALAYAYTAPVRGPVYDSRDYVQVGNQVLDFCPGTLQSTERDLDVAI 82 Query: 85 EGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 +G+ + +++ G TR G ++ G L + G + D PI IP+ E ++G Sbjct: 83 QGEGFLVVQTEDGGEAYTRAGNLQIDATGVLRNERGLAVLGDGG--PITIPEY-ESLSIG 139 Query: 144 EKGEISQKGKVIATMGLYSVDM-------SQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 G I+ + A L +VD +Q +R E+ I + D +GV V Sbjct: 140 TDGTITIRPAGAAPNALAAVDRLRLVNPDTQNLLRGEDGLIRAQDGEPAVAD-AGVRVIS 198 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLID---ENEKS 233 G LE SN N++ + +MI L++ F + +++ NEK+ Sbjct: 199 GMLETSNVNTVASLTRMIELSRAFETHIKMMETASSNEKN 238 >gi|148980300|ref|ZP_01815987.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] gi|145961319|gb|EDK26629.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] Length = 250 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 124/258 (48%), Gaps = 40/258 (15%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFV-- 59 +AAQ A +++ +++N++N +TVGF+ +V F ++ G ++++ + + Sbjct: 1 MAAQDA---KMTAISNNLANINTVGFKRDRVVFEDLFYSVDKQAGTETTELNEHPTGIQL 57 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 +G + E G+ +T + D A+ GD +F +E+ G ++ TR+G+F+ DG L Sbjct: 58 GNGVRVVGTEKVFTQGNIQNTNQQFDLAILGDGFFQIENSDGELLYTRNGQFQTNSDGQL 117 Query: 115 VSASGKYPVLDMASVPIQIP----QKDEIFNVGEKGEISQK--GKVIATMGLYSVDMS-Q 167 V+ G YP++ +P + D + + G+++ + G++ + +S Q Sbjct: 118 VNTQG-YPLIPEVVIPPEATLVSITADGVVSATIPGQVNPEDLGQITIVKFMNPAGLSAQ 176 Query: 168 G---FVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G FV E SG +E ++G +K+G LE SN + EM MI TQ+ Sbjct: 177 GGNLFVETEGSG-------EAVELVAGTEGSGQLKQGALEGSNVQVVEEMVDMIA-TQRA 228 Query: 221 NSITTLIDENEKSMLEAI 238 ++ + ML+ I Sbjct: 229 YEMSAKMVSAADEMLQYI 246 >gi|323341368|ref|ZP_08081612.1| flagellar distal rod protein [Lactobacillus ruminis ATCC 25644] gi|323091245|gb|EFZ33873.1| flagellar distal rod protein [Lactobacillus ruminis ATCC 25644] Length = 234 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 36/237 (15%) Query: 15 LEQRLSTVADNMSNTDTVGFR-------TIK-VKFSEVVGAIKNDIDQKISFVASGKE-- 64 L++R ++ N++N +T G++ T+K V+ +G +KN+ + G + Sbjct: 15 LQKRQEAISANIANVNTNGYQEKKLFQSTLKNVQLHNFMGGLKNEQRVNVGNFTFGNQID 74 Query: 65 --YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKY 121 YL+ + GS T + DFA+ G +F + G I TR+G F G LV+ G Y Sbjct: 75 GSYLNTQSGSMHETDLKTDFAINGAGYFTVRMNNGQIGYTRNGNFTENRQGQLVTQEG-Y 133 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 VL IQ + + F +I + S +QG N+ + N Sbjct: 134 AVLGANGQAIQANEANPNF-------------MIVSFNNASALQNQG-----NTIYTSNT 175 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T + V +G LE SN ++ M +I +++F + ++ +++ +A+ Sbjct: 176 AGTQIRS----EVVQGMLEGSNTDTAQNMVDLIQTSREFEANQKVLSTANQTLSKAV 228 >gi|296447438|ref|ZP_06889363.1| flagellar basal-body rod protein FlgG [Methylosinus trichosporium OB3b] gi|296255058|gb|EFH02160.1| flagellar basal-body rod protein FlgG [Methylosinus trichosporium OB3b] Length = 262 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 114/260 (43%), Gaps = 44/260 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE---- 69 A +Q + +++N++N +T F+ + +F++++ + D Q +S G++ E Sbjct: 13 AQQQNIEVISNNIANINTTAFKRSRAEFTDLL--YQADRLQGVS--NRGRDATVPEGAQT 68 Query: 70 --------------VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 GS TG +LD AL G WF + P I+ TR G F +G L Sbjct: 69 GLGVRLTAIRSLQTQGSLAQTGNQLDLALNGRGWFQVTGPDSEILYTRSGSFSTNANGQL 128 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATMGLYS- 162 V+ G + S I IP +V + G ++ Q G++ IA S Sbjct: 129 VTGDGY-----LVSPTIIIPNNAVSVSVSQSGLVTAVIGGQTNPQQLGQLTIANFANESG 183 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF-- 220 ++ G + R+N + P + GV + + +LE SN +S+ E+ +I + F Sbjct: 184 LEALGGNLFRQNQASGTPVVGVPGDPGYGV-ISQYYLESSNVDSVKELVNLIAAQRAFEL 242 Query: 221 -NSITTLIDENEKSMLEAIR 239 + + + +DE ++ + IR Sbjct: 243 NSKVISAVDEMAGTVSKGIR 262 >gi|304392506|ref|ZP_07374446.1| flagellar basal-body rod protein FlgG [Ahrensia sp. R2A130] gi|303295136|gb|EFL89496.1| flagellar basal-body rod protein FlgG [Ahrensia sp. R2A130] Length = 262 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 33/244 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKN-----DI 52 + +I A ++ L +A N++N +T GF+ +V+F++++ I N ++ Sbjct: 3 ALSIAATGMQAQQKNLDVIAHNIANINTTGFKRGRVEFTDLIYDTERLNGIPNRANSANV 62 Query: 53 DQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 + F + + V G TG D AL G+ WF +E+ G + R G F Sbjct: 63 PEGAHFGLGVRTASVRNVHLQGQVAQTGNRFDLALTGNGWFQIENAAGETVYQRSGAFNT 122 Query: 109 TDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIF-NVGEKGEISQKGKVIATMGLYS 162 G LV+ G V +VP I I +F VG E + G++ ++ ++ Sbjct: 123 NGAGELVTQDG-LRVQPGITVPDNTTDIFINASGAVFARVGGAAEQQEIGQL--SLATFA 179 Query: 163 VDMS------QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 D+ F + + SG P + TP D T+++G+LE SN S+ E+ Q+I Sbjct: 180 NDVGLTPLGDNLFAQSDASG-EPQV-GTP-GDPGYATIRQGYLESSNVESVKEITQLIAA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRGY 240 >gi|94312671|ref|YP_585880.1| flagellar basal body distal rod protein [Cupriavidus metallidurans CH34] gi|93356523|gb|ABF10611.1| flagellar basal body distal rod protein [Cupriavidus metallidurans CH34] Length = 261 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 48/263 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + ++ +++N++N T GF+ + F E++ GA+ +D Sbjct: 11 GLDAQ---QTQMDVISNNLANVSTTGFKRSRAVFEEMMYQTIRQPGAMSSDQTVLPSGMQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 I + VA+ + + G+ TG D A+ G+ +F + P G TRDG F+V Sbjct: 68 IGTGVRPVATERIHTQ---GNPQQTGNAKDVAIIGNGFFQVTMPDGTTSYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV-IATMGLYSVDM-- 165 +G LV++SG V++ A I +P N+ G ++ Q G AT+G + Sbjct: 125 NGQLVTSSGF--VINPA---ITLPANYTSVNIARDGTVTVMQPGSTNAATVGQLQLATFP 179 Query: 166 ------SQG---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 S G +V+ + SG P T + L+G T++ ++E SN N + E+ MI Sbjct: 180 NPTGLESMGENLYVQTDASG----APNTTVPGLNGAGTLQNNYVEASNVNVVEELVSMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAI 238 TQ+ I + + ML+ + Sbjct: 236 -TQRAYEINSKAVQTSDQMLQRL 257 >gi|221069321|ref|ZP_03545426.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni KF-1] gi|220714344|gb|EED69712.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni KF-1] Length = 246 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 14/229 (6%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR + +A N++N T GFR F V ++ F G Sbjct: 14 AAAQRQAVLAHNLANAGTNGFRAEMSTFRSV--PLQGTGAGTRVFALEATSGYQDTPGPA 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G AWFA++ G TR+G F+++ +G LV+++G+ VL PI Sbjct: 72 QRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA-VLSDGGAPID 130 Query: 133 IPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 IP + I ++G G ++ K + + L + + + VR ++ G L Sbjct: 131 IPPESTI-SLGSDGTLTAKMGNQLPVAVGRVKLVTPPVDEPLVRGDD-GFFRAAQGDALP 188 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 + + G +E SN NS+ M MI +++F L+ + N+KS Sbjct: 189 NDETARLLSGSIEGSNVNSVETMVGMIAASRQFEQQMKLLQTAETNDKS 237 >gi|146294548|ref|YP_001184972.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] gi|145566238|gb|ABP77173.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] Length = 261 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 76/144 (52%), Gaps = 15/144 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------N 50 MQ++ + A + +++ +A+N++N +T GF+ +V F+++ ++ N Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + A + ++++ G +T +LD A++G +F +E P G + TRDG+F Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEEPNGDLAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP 130 + +G +V++ G P++ +P Sbjct: 121 YRSSEGMMVTSQG-LPLVPNIVIP 143 >gi|299531285|ref|ZP_07044695.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni S44] gi|298720692|gb|EFI61639.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni S44] Length = 246 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 14/229 (6%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A QR + +A N++N T GFR F V ++ F G Sbjct: 14 AAAQRQAVLAHNLANAGTNGFRAEMSTFRSV--PLQGTGAGTRVFALEATSGYQDTPGPA 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD G AWFA++ G TR+G F+++ +G LV+++G+ VL PI Sbjct: 72 QRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNGQA-VLSDGGAPID 130 Query: 133 IPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 IP + I ++G G ++ K + + L + + + VR ++ G L Sbjct: 131 IPPESTI-SLGSDGTLTAKMGNQLPVAVGRVKLVTPPVDEPLVRGDD-GFFRAAQGDALP 188 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKS 233 + + G +E SN NS+ M MI +++F L+ + N+KS Sbjct: 189 NDETARLLSGSIEGSNVNSVETMVGMIAASRQFEQQMKLLQTAETNDKS 237 >gi|163733143|ref|ZP_02140587.1| flagellar basal-body rod protein FlgG [Roseobacter litoralis Och 149] gi|161393678|gb|EDQ18003.1| flagellar basal-body rod protein FlgG [Roseobacter litoralis Och 149] Length = 246 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 113/249 (45%), Gaps = 43/249 (17%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY----- 65 R+ T+++N+SN T G+ + +F+++ G + N D + + +G + Sbjct: 2 RVETISNNLSNMSTTGYNARRAEFADLHYQQMSRPGTV-NATDGTV--LPTGVQLGLGVR 58 Query: 66 -----LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + GS +TG +LD A+EG + + P G TRDG K +G +V++ G Sbjct: 59 PSAVSVQLQQGSLAATGGDLDLAIEGIGFLEVTLPSGQAAYTRDGGLKRDAEGLIVTSDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQG----- 168 YPV I IP ++ GE+ + +++ + ++G Sbjct: 119 -YPV----EPEIVIPDDARSISINTSGEVFAYFSDATDAELLGQFNMAGFTNAKGLEALG 173 Query: 169 ---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 F E SG + I TP ED G TV++G+LE S+ +++ E+ ++I + + Sbjct: 174 GNLFAETEASGAA--IVSTPGEDGLG-TVRQGYLESSSVDAVREITELIEAQRGYEMNAK 230 Query: 226 LIDENEKSM 234 +I ++ M Sbjct: 231 VISAADQMM 239 >gi|297538896|ref|YP_003674665.1| fagellar hook-basal body protein [Methylotenera sp. 301] gi|297258243|gb|ADI30088.1| fagellar hook-basal body protein [Methylotenera sp. 301] Length = 422 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 16/198 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A ++L + +N++N +TVGF+ + +F++V N + Sbjct: 2 SFQQGLSGLNAASKQLEVIGNNVANANTVGFKQSRAEFADV---FANSLTGGGGTQIGIG 58 Query: 64 EYLSKEV-----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 LS G+ ST LD A+ G +F + + + +R+G+FK+ DG +V ++ Sbjct: 59 TNLSTVAQQFTQGNVTSTNNSLDIAINGGGFFRMTNNGAVTYSRNGQFKMDKDGYIVDSA 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 K+ + A+ QK ++ Q +GL ++D R+ ++ Sbjct: 119 SKH-LTGYAADTTGAIQKGAPVDLKINTADLQPKATAKIVGLVNLDS-----RKATPAVT 172 Query: 179 PNIP--PTPLEDLSGVTV 194 P P PT D + VTV Sbjct: 173 PFSPTDPTTYTDSTAVTV 190 >gi|163750568|ref|ZP_02157806.1| flagellar basal-body rod protein FlgG [Shewanella benthica KT99] gi|161329723|gb|EDQ00712.1| flagellar basal-body rod protein FlgG [Shewanella benthica KT99] Length = 262 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/240 (22%), Positives = 105/240 (43%), Gaps = 29/240 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKN 50 MQ + I A + +S +++N++N T+G++ + F ++ + A Sbjct: 1 MQAALWISKTGLDAQQTNISVISNNLANASTIGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + ++ A K +++V G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + D G +V++ Y V I IP V +GE+S K +V+ + + Sbjct: 121 TLDDTGQIVTSGSGYVV----QPAITIPDNATSITVSAEGEVSVKMPGTIENQVVGQLSM 176 Query: 161 YSVDMSQGF-VRRENSGISPNIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G +N + TP++ L G+ +++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPMGQNLYLETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIQ 236 >gi|317008999|gb|ADU79579.1| flagellar basal-body rod protein [Helicobacter pylori India7] Length = 269 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 44/276 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPDAEIEVNQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +K+ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSDSGALKQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIA 242 EM +I + + + + ++ ++ M EAI +A Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLA 266 >gi|170725957|ref|YP_001759983.1| flagellar basal body rod protein FlgG [Shewanella woodyi ATCC 51908] gi|169811304|gb|ACA85888.1| flagellar basal-body rod protein FlgG [Shewanella woodyi ATCC 51908] Length = 262 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + +S +++N++N TVG++ + F ++ V A + ++ Sbjct: 11 GLDAQ---QTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 VGAGTKVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEIQLPDGTAAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V++ Y V I IP+ V +GE+S K A + F+ Sbjct: 128 IVTSGSGYVV----QPAITIPENATGITVSAEGEVSVKTAGTAESQVVGQLTMSDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ V++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAVRQGALETSNVNVTEELVNLIE 236 >gi|120597307|ref|YP_961881.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] gi|120557400|gb|ABM23327.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] Length = 261 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 76/144 (52%), Gaps = 15/144 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------N 50 MQ++ + A + +++ +A+N++N +T GF+ +V F+++ ++ N Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + A + ++++ G +T +LD A++G +F +E P G + TRDG+F Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEEPNGDLAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP 130 + +G +V++ G P++ +P Sbjct: 121 YRSSEGMMVTSQG-LPLVPNIVIP 143 >gi|292489132|ref|YP_003532019.1| flagellar basal-body rod protein FlgF [Erwinia amylovora CFBP1430] gi|292900251|ref|YP_003539620.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291200099|emb|CBJ47225.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291554566|emb|CBA22179.1| Flagellar basal-body rod protein flgF [Erwinia amylovora CFBP1430] gi|312173290|emb|CBX81545.1| Flagellar basal-body rod protein flgF [Erwinia amylovora ATCC BAA-2158] Length = 245 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 7/153 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++A A R + ++NM+N T GFR F V ++ + + V Sbjct: 1 MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAV--PVEGETIATRALVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 Y +G TG LD AL + W A+ P G TR+G +V DG+L S +G Sbjct: 59 DSTPYHDGTMGPLNHTGRSLDVALPQNGWLAVAMPDGTEAYTRNGAIEVDRDGAL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 YP++ + P+ +P + + + G ++ G Sbjct: 118 -YPLMGDGA-PLTVPPQSAV-TIAPDGTLTALG 147 >gi|154175436|ref|YP_001408075.1| flagella basal body rod protein [Campylobacter curvus 525.92] gi|112802880|gb|EAU00224.1| flagella basal body rod protein [Campylobacter curvus 525.92] Length = 273 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 25/172 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVG------AIKND 51 MQ + A + RL+ +++N++N +T+GF+ V F + +KN Sbjct: 1 MQNGYYQATAGMVTQFSRLNVISNNLANVNTIGFKRNDVVIGDFERIFKETQDELPLKNH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 F+ +EY G F + LDFA++ D +F +++P G+ LT+ Sbjct: 61 TKDAAKFLNRTLDRVPQVSEEYTDFSAGGFKYSSNTLDFAIKREDMFFLVDTPNGVRLTK 120 Query: 103 DGRFKVTDDGSLVSASG------KYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 +G F + +DG +V+ G Y L IQ+P D +V + G I Sbjct: 121 NGSFNLDEDGFIVTKEGYRVLPNNYQTLAPEQRGIQVPL-DRSLSVDKNGNI 171 >gi|89902479|ref|YP_524950.1| flagellar basal-body rod FlgG [Rhodoferax ferrireducens T118] gi|89347216|gb|ABD71419.1| Flagellar basal-body rod FlgG [Rhodoferax ferrireducens T118] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 39/254 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK-----------IS 57 A + +L +++N++N T GF+ F +++ A N +Q + Sbjct: 14 AQQMQLDVISNNLANVSTNGFKRASAVFEDLMYQNLRQAGSNSSEQSQLPTGLQVGLGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ + + G+ +G +LD A++G+ +F + P G TRDG F+V+ G LV+ Sbjct: 74 TVATSRSFAQ---GNLQQSGNKLDVAIQGNGFFQVTMPDGTTNYTRDGSFQVSSTGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS---------- 166 A+G P+ + +VP I G+ +Q G+ S+ ++ Sbjct: 131 ATG-LPIANGVTVPA---NATSIAIAGDGTVTAQVPGTPTPQGIGSISLASFVNPAGLDP 186 Query: 167 --QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 Q + PN TP D G + +G++E SN N + E+ MI TQ+ + Sbjct: 187 KGQNLYAESTASGQPN-SGTPGADGMGA-LMQGYVETSNVNVVQELVTMIQ-TQRAYEMN 243 Query: 225 TLIDENEKSMLEAI 238 + + ML+ + Sbjct: 244 SKAIQTSDQMLQKL 257 >gi|289523332|ref|ZP_06440186.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503024|gb|EFD24188.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 262 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVASGKE 64 G +A + L +++N++N +T G++ I+ +F +++ I + + S + +G + Sbjct: 8 GATGMIAQQSNLDVISNNLANVNTTGYKKIRAEFEDLIYQIGREPGAPVEPDSMIPTGVQ 67 Query: 65 Y-LSKEV---------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 L + G+ T D A+EGD +F + P G + TRDG + V DG Sbjct: 68 VGLGTRLIGTSRIMSPGNLQVTDNPFDIAIEGDGFFQVTLPDGTMAYTRDGTWHVDGDGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKV----IATMGLYSVDMSQ 167 +V+++G + I IP+ V GE+ Q G V I + L Q Sbjct: 128 IVTSNGY-----LLEPQIAIPEDTVEITVSPTGEVYARQAGDVEPDEIGQIELARFVNPQ 182 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G F+ SG I P E+ G T+++G LE SN + EM MI Sbjct: 183 GLRAMGKNLFLETPASGFP--ILGQPGEEGFG-TLRQGALEMSNVQVVEEMVSMI 234 >gi|288962678|ref|YP_003452972.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288914944|dbj|BAI76428.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 261 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 51/246 (20%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKI---SFVASGKE 64 +A QL +E +++N++N +T ++ + +F +++ A K Q + V +G E Sbjct: 12 MAQQLNVE----VISNNIANINTTAYKRSRAEFQDLMYQAEKRQGSQSTDSGTIVPTGVE 67 Query: 65 Y----------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G+ STG ELD A+EG +F + P G + TR G FK++ +G+ Sbjct: 68 VGLGVRPTSVNRINTTGNLTSTGNELDLAIEGRGYFNVTQPGGETVYTRAGSFKLSPEGT 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQ-KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG--- 168 +V+A G P I +PQ E+ I++ G+V+A + + ++QG Sbjct: 128 IVTADG------FTVAPGITVPQGTREVV-------INRSGEVLAYVDGKTQPVNQGQLA 174 Query: 169 ---FVRREN-SGISPNI----PPT--PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 FV + N+ P + P E L+G T+++ +LE SN N + E+ ++I Sbjct: 175 MTVFVNESGLEALGDNLFRATPASGEPQEGLAGQAGFGTIRQKYLESSNVNVVQEITELI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 SAQRAY 240 >gi|225551864|ref|ZP_03772807.1| flagellar basal-body rod protein FlgG [Borrelia sp. SV1] gi|225371659|gb|EEH01086.1| flagellar basal-body rod protein FlgG [Borrelia sp. SV1] Length = 265 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 116/263 (44%), Gaps = 40/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATM 158 LV++ G Y VL P + Q + E+G +S K + + Sbjct: 128 LVTSQG-YKVLPNIFFPEEYIQNS--IAISEEGIVSVKIDNNNEPIELGQIEISRFVNPA 184 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + + +E +G I P + G +++G LE SN + EM MI + Q Sbjct: 185 GLSAIGSN---LFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVTMI-VAQ 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + + +ML N+ Sbjct: 240 RAYEINSKAIQTSDNMLGIANNL 262 >gi|224370761|ref|YP_002604925.1| FlgF [Desulfobacterium autotrophicum HRM2] gi|223693478|gb|ACN16761.1| FlgF [Desulfobacterium autotrophicum HRM2] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 26/222 (11%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVASGKEYLSKEVG 71 L E++L +++++N DT GF+ V F + A+ D+ Q +G ++ Sbjct: 13 LRQERKLEVTSNHLANVDTAGFKKDVVSFDSMFKAALNTDLTQ------AGVKH------ 60 Query: 72 SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPI 131 TG LD AL + +F +E+P G+ TR+G F + D LV +G VL PI Sbjct: 61 ----TGNPLDLALSDEGFFKVETPSGVRYTRNGVFSLNADNVLVDQNGD-AVLGQNG-PI 114 Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL-S 190 I + GEI G VI + + + D + +++E + T LE + Sbjct: 115 TITAG--TVEINGTGEIRGDGAVIDQLDIVTFD-TLDLLQKEGANNFVFTGDTNLEVAPA 171 Query: 191 GVTVKRGFLEDSNANSMYEMGQMI---HLTQKFNSITTLIDE 229 V V +G LE S+ ++ EM MI + + F + DE Sbjct: 172 NVGVVQGSLELSSVKAVEEMVNMIDHHRMYETFQKMMMTFDE 213 >gi|149191153|ref|ZP_01869411.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148834991|gb|EDL51970.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 408 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A L+T+++N++N T GF+ + +F+ V + + V + Sbjct: 2 SFSIALSGLNASNSELNTISNNIANVSTTGFKESRTEFASVYSGSE---AGGVEVVGVSQ 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + ++ G+ TG LD AL G+ +F LE +G + TR G F + DG + + SG Sbjct: 59 NF--EKSGTVTGTGRSLDMALSGNGFFVLEDSKGQTLYTRSGIFNMNADGVITANSG 113 >gi|292489131|ref|YP_003532018.1| flagellar basal-body rod protein FlgG [Erwinia amylovora CFBP1430] gi|292900250|ref|YP_003539619.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291200098|emb|CBJ47224.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291554565|emb|CBA22177.1| Flagellar basal-body rod protein flgG [Erwinia amylovora CFBP1430] gi|312173289|emb|CBX81544.1| Flagellar basal-body rod protein flgG [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +++N++N + GF+ + F +++ GA ++ Sbjct: 11 GLEAQ---QTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQTTLPTGMQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + ++ VA+ + + GS TG + D A++G +F ++ P G TRDG F + + Sbjct: 68 LGTGVATVATQRMHTQ---GSLTQTGRDYDMAIQGKGFFQVQLPDGTTAYTRDGSFSLNE 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----I 155 +G +V+A G PV I +P + VGE G ++ Q G++ I Sbjct: 125 NGQMVTAEGN-PV----QPDITVPADAQKLTVGEDGIVTATVPGQAAPQQIGQLTLANFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL S+ + + + SG +PN TP D +G +K ++E SN N E+ MI Sbjct: 180 NDAGLESLGGNL-YAETQASG-APN-EATPGMDGAG-RLKHQYIETSNVNVAEELVTMIQ 235 Query: 216 LTQKF 220 + + + Sbjct: 236 VQRAY 240 >gi|261341492|ref|ZP_05969350.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] gi|288316288|gb|EFC55226.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] Length = 261 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 49/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----NDIDQK-------- 55 GLAAQ A ++S +++N++N +T GF+ +V F+++ + +DQ Sbjct: 11 GLAAQDA---KMSAISNNLANVNTTGFKRDRVMFADLFYQNQRTPGGQLDQNNTSPTGIQ 67 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + + + KE+ G+ +TG +LD A+ G +F +E+ G I TR G F+ Sbjct: 68 FGTGVKILGTQKEF---STGNIQNTGQKLDVAITGQGFFQVETSDGDIAYTRAGNFQKNP 124 Query: 111 DGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS----------QKGKV----- 154 DG L +A G + VP I++P + +G+ G ++ + G++ Sbjct: 125 DGMLTNAQG------LPLVPQIELPDNVKDIQIGKDGTVTATVAGETDPVELGQITLVNF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + GL ++ G + RE + + E+ G +++G LE SN + EM MI Sbjct: 179 VNPAGLEAIG---GNLYRETAASGEAVEGVAGEEAFG-QLEQGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKF 220 + + + Sbjct: 235 TVQRAY 240 >gi|218887604|ref|YP_002436925.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758558|gb|ACL09457.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 30/238 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDID 53 M S +A + + +++N++N +T F+ + +F + + GA + Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISNNLANVNTTSFKKSRAEFEDLMYQNMRIAGAATEGDN 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + + G V G + +TG LD A+EGD +F ++ TR G FK Sbjct: 61 RIPTGIQVGMGVRPTTVHKFFTQGDYSNTGNSLDLAIEGDGFFLVQVNGEDAYTRAGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGLYS 162 + DG +V+A+G Y + +VP + V E G IS G +A + LY+ Sbjct: 121 LNQDGVVVTANG-YTLQPEFTVPAETKN----ITVTENGHISALDSNGAALAEADIPLYT 175 Query: 163 VDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G R + P+ + P E+ G T+ +GFLE SN + EM MI Sbjct: 176 FINPAGLEARGRNLYVPSEASGEAVEGVPGENQVG-TIAQGFLEMSNVEVVDEMVNMI 232 >gi|115523193|ref|YP_780104.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisA53] gi|115517140|gb|ABJ05124.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris BisA53] Length = 411 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 4/110 (3%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASGKEYLSKEVGS 72 A +LSTVADN++N +T G++ +FS ++ +K+ S V + Y + G+ Sbjct: 16 AQSNKLSTVADNIANVNTTGYKRASTEFSSLI--LKSGSGSYNSGSVETQVRYAISDPGT 73 Query: 73 FISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKY 121 T + D A++G+ +FA+ RG LTR G F +G+LV+A G Y Sbjct: 74 TQYTTSATDLAIQGNGFFAVADARGTPFLTRAGSFVPDGEGNLVNAGGYY 123 >gi|167464160|ref|ZP_02329249.1| flagellar basal body rod protein FlgG [Paenibacillus larvae subsp. larvae BRL-230010] Length = 270 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 34/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF----SEVVGAIKNDID--- 53 M S G++ + +L + +N++N +T+GF+ +V F S+ + D Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTIGFKGSRVMFQDLMSQTIRGATGPTDTQG 60 Query: 54 ----QKI---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR---GIILTRD 103 Q+I S VAS + L G+ ++T + D +EGD +FA+++ LTR Sbjct: 61 GVNGQQIGLGSTVAS-IDTLHTNTGA-MNTYVKTDMRIEGDGYFAVKTSSESDTYYLTRA 118 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KG---KVIATM 158 G FKV LV+A G VL+ PI+ + ++ G G I+Q KG + I + Sbjct: 119 GNFKVDAQRRLVTADGML-VLNSDGDPIEFSENMTDYSFGADGTITQILKGGEKETIGQI 177 Query: 159 GLYSVDMSQGFVRRENS--GISPNIP------PTPLEDLSGV-TVKRGFLEDSNANSMYE 209 G+ V G ++ + ++PN TP +G T+ G LE SN + E Sbjct: 178 GVVKVTNPSGLMKVGGNLFELTPNAHDGDPGISTPKNAETGTGTLMTGSLEMSNVDLTSE 237 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +MI + F + + +I +++ + E + Sbjct: 238 FTEMIVAQRGFQANSRIITTSDEVLQEVV 266 >gi|92114098|ref|YP_574026.1| flagellar basal body FlaE [Chromohalobacter salexigens DSM 3043] gi|91797188|gb|ABE59327.1| flagellar basal body FlaE [Chromohalobacter salexigens DSM 3043] Length = 387 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 7/131 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F+ L+ A +L T+ +N++N+ TVGF++ V+F+++ Q + +GK Sbjct: 3 FSQSLSGVNAASSQLDTIGNNIANSQTVGFKSSSVQFADIFAN-----SQGLGTRVAGK- 56 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 GS +TG LD A+ GD +F + +R+G+ ++ DG +A G + Sbjct: 57 LQDFGTGSLETTGRGLDLAIAGDGFFQFTQNEQLAYSRNGQLSMSADGYFENAQGA-RLT 115 Query: 125 DMASVPIQIPQ 135 D P+Q+ Q Sbjct: 116 DQQGEPLQVTQ 126 >gi|322382385|ref|ZP_08056292.1| FlgG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153738|gb|EFX46113.1| FlgG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 266 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 34/262 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF----SEVVGAIKNDID-------QKI 56 G++ + +L + +N++N +T+GF+ +V F S+ + D Q+I Sbjct: 4 GISGMRGFQTKLDVIGNNIANVNTIGFKGSRVMFQDLMSQTIRGATGPTDTQGGVNGQQI 63 Query: 57 ---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR---GIILTRDGRFKVTD 110 S VAS + L G+ ++T + D +EGD +FA+++ LTR G FKV Sbjct: 64 GLGSTVAS-IDTLHTNTGA-MNTYVKTDMRIEGDGYFAVKTSSESDTYYLTRAGNFKVDA 121 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KG---KVIATMGLYSVDM 165 LV+A G VL+ PI+ + ++ G G I+Q KG + I +G+ V Sbjct: 122 QRRLVTADGML-VLNSDGDPIEFSENMTDYSFGADGTITQILKGGEKETIGQIGVVKVTN 180 Query: 166 SQGFVRRENS--GISPNIP------PTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHL 216 G ++ + ++PN TP +G T+ G LE SN + E +MI Sbjct: 181 PSGLMKVGGNLFELTPNAHDGDPGISTPKNAETGTGTLMTGSLEMSNVDLTSEFTEMIVA 240 Query: 217 TQKFNSITTLIDENEKSMLEAI 238 + F + + +I +++ + E + Sbjct: 241 QRGFQANSRIITTSDEVLQEVV 262 >gi|317181698|dbj|BAJ59482.1| flagellar basal-body rod protein [Helicobacter pylori F57] Length = 269 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q EI + I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAGIEVNQNGEITFRDNEAPI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + ++ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|269138582|ref|YP_003295282.1| flagellar hook protein [Edwardsiella tarda EIB202] gi|267984242|gb|ACY84071.1| flagellar hook protein [Edwardsiella tarda EIB202] gi|304558592|gb|ADM41256.1| Flagellar hook protein FlgE [Edwardsiella tarda FL6-60] Length = 410 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 18/143 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F+ ++ A +L + +N++N+ TVGF++ V F+++ K + ++ + ++ Sbjct: 3 FSQAISGMNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSK--VGLGVTVASVNQD 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY-- 121 + + G+ +T LD A+ G +F ++ P G + TR+G+F G L +A G Y Sbjct: 61 F---KDGTTTTTNRGLDVAISGQGFFRMQDPNGSVYYTRNGQFSKDAKGFLTNAQGMYLT 117 Query: 122 --------PVLDMAS--VPIQIP 134 P + + VPIQIP Sbjct: 118 GYPAAGTPPTIQQGADPVPIQIP 140 >gi|27380939|ref|NP_772468.1| flagellar basal body rod protein FlgG [Bradyrhizobium japonicum USDA 110] gi|27354105|dbj|BAC51093.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 40/256 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGA----------IKN 50 G+AAQ E + +++N++N T GF+ F ++ VGA + Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGFKKQTAAFQDLIYEHVRRVGAQASDQGTIVPVGV 66 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 DI + V + + S G+ TG +LD A+ G+ +F + P G TRDG F++ Sbjct: 67 DIGGGVKTVGTPR---SMTQGTLSQTGNDLDLAISGEGFFKILMPDGTFQYTRDGTFQMD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 + G +V+A G PV I IP V E+G++ S V +GL Sbjct: 124 NQGRVVTAQGN-PVQPT----ITIPNNASGLTVNEQGQVSVTLPGSSTSAVQGQLGLTRF 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQ 218 G N+ + P +D + T + +G LE +N + + EM +I + Sbjct: 179 INKAGLQPVGNNQFTETPSSGPPQDGTANTEGYGKITQGSLEQANVDVVSEMSDLIAAQR 238 Query: 219 KFNSITTLIDENEKSM 234 + +I ++ M Sbjct: 239 AYEMNAKVISAADQMM 254 >gi|149203125|ref|ZP_01880096.1| flagellar basal-body rod protein FlgG [Roseovarius sp. TM1035] gi|149143671|gb|EDM31707.1| flagellar basal-body rod protein FlgG [Roseovarius sp. TM1035] Length = 261 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI--SF 58 G+AAQ + R+ T+++N++N T G+ + +F+++ G I N D + + Sbjct: 10 GMAAQ---QMRVETISNNLANMSTTGYNARRAEFADLHYQQLARAGTI-NAADGTVLPTG 65 Query: 59 VASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 V G + GS T +LD A++G + + P G TRDG K + D Sbjct: 66 VQLGLGVRPSAISVQLAQGSLTQTNGDLDLAIDGGGYLEVRLPSGQSGYTRDGALKRSAD 125 Query: 112 GSLVSASGKYPVLDMASVP-----IQIPQKDEIFN-VGEKGEISQKGKV-----IATMGL 160 G +V++ G +P+ ++P I I + E+F + E Q G++ GL Sbjct: 126 GVIVNSEG-FPIAPEITIPEDARSITINAEGEVFAFFQDTAEAQQLGQIDLVGFTNPKGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ + FV E SG P T +D G T+++G+LEDS+ + + E+ ++I + + Sbjct: 185 EAIGGNL-FVETEASG--PANVTTAGQDGLG-TLRQGYLEDSSVDPVREITELIEAQRGY 240 >gi|148980302|ref|ZP_01815989.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] gi|145961321|gb|EDK26631.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] Length = 408 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 16/122 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A L+T+++N++N T GF+ + +F+ V + A G Sbjct: 2 SFSIALSGLNASNSELNTISNNIANVSTTGFKESRTEFASVYSGSE----------AGGV 51 Query: 64 EYLS-----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 E + ++ G+ TG LD AL G+ +F LE +G + TR G F + DG + + Sbjct: 52 EVVGVSQNFEKSGTVTGTGRSLDMALSGNGFFVLEDSKGQTLYTRSGIFNMNADGVITAN 111 Query: 118 SG 119 SG Sbjct: 112 SG 113 >gi|157959902|ref|YP_001499936.1| flagellar hook protein FlgE [Shewanella pealeana ATCC 700345] gi|157844902|gb|ABV85401.1| flagellar basal body FlaE domain protein [Shewanella pealeana ATCC 700345] Length = 402 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N+ TVGFR+ + +FS AI N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFS----AIYNGGQAGGVNVMSTS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + S GS TG +LD ++G+ +F L G R G F DG + +G Sbjct: 58 QNFSMG-GSLTYTGRQLDMGIQGEGFFVLSGQDGSTSYARAGMFNQDADGYITDPAGN 114 >gi|330721006|gb|EGG99167.1| Flagellar basal-body rod protein FlgG [gamma proteobacterium IMCC2047] Length = 261 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 44/259 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL+AQ +Q L+++++N++N T G++ + F +++ GA + Q S + Sbjct: 11 GLSAQ---DQALASISNNLANVSTTGYKRERAVFQDLLYPVHTQPGAQSSQSTQLPSGLQ 67 Query: 61 SG---KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G K ++++ GS T LD A+ G +F + P G RDG+F++ DG Sbjct: 68 TGTGVKTVATQKLHTNGSLEVTDQPLDIAINGRGYFQVLLPDGETGYARDGQFQLNSDGV 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 +V++ G ++ I +P +G G IS Q + I Sbjct: 128 IVNSQG----FELQP-SITVPANTLNITIGSDGVISATVAGSSTPTQIGDIQLAEFINPT 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 GL ++ G + +E + + P T LSG T+++G LE+SN N + E+ MI T Sbjct: 183 GLQAIG---GNLYKETA--ASGTPTTGTPGLSGRGTIEQGVLENSNVNIVEELVDMI-TT 236 Query: 218 QKFNSITTLIDENEKSMLE 236 Q+ + T + ML+ Sbjct: 237 QRAYEMNTKVISTSDQMLQ 255 >gi|227820875|ref|YP_002824845.1| flagellar hook protein FlgE [Sinorhizobium fredii NGR234] gi|227339874|gb|ACP24092.1| putative flagellar hook protein FlgE [Sinorhizobium fredii NGR234] Length = 404 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 10/117 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE--- 64 G++ A RLSTVA+N++N+ T G++ +FS ++ N S+ + G E Sbjct: 10 GVSGMNAQANRLSTVAENIANSSTTGYKRASTEFSSMILPSSNG-----SYNSGGVETSV 64 Query: 65 -YLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 Y + GS T + D A++GD +F ++ G LTR G F D G+LV+A+G Sbjct: 65 RYSISDQGSTTYTTSASDLAIDGDGFFIVQGANGQEYLTRAGAFVQDDSGNLVNAAG 121 >gi|163758031|ref|ZP_02165119.1| flagellar hook protein E [Hoeflea phototrophica DFL-43] gi|162284320|gb|EDQ34603.1| flagellar hook protein E [Hoeflea phototrophica DFL-43] Length = 419 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 22/123 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G + A RL TVADNM+N +T G++ +FS ++ GA+ D+ IS Sbjct: 10 GASGMNAQANRLGTVADNMANANTTGYKRASAEFSSLILPGSAGSYNSGAVTTDVRYSIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G+ T ++ D AL+G +F + G+ LTR G F +G LV+ Sbjct: 70 -----------QAGALEFTSSKTDMALDGSGFFIVTDDNGLPFLTRAGSFVPDGEGFLVN 118 Query: 117 ASG 119 A+G Sbjct: 119 AAG 121 >gi|30248324|ref|NP_840394.1| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718] gi|30138210|emb|CAD84218.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 51/247 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + ++ +A+N++N T GF+ ++ F +++ GA ++ Sbjct: 11 GLDAQ---QTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIRQPGAQSSERTRLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + VA+ +L G+ TG D A++G+ +F + P G + TRDG F+ Sbjct: 68 LGTGVRPVATENIFLQ---GNLQQTGNTRDVAIQGEGFFQILLPDGTLAYTRDGAFQSDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVI 155 DG +V+ASG +P+ I IP +G G +S Q I Sbjct: 125 DGQMVTASG-FPL----QPSITIPPNTLNITIGRDGTVSVLTPGSALPVPVGNIQLTTFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQM 213 GL + ++ +SG+ +P IP T +G+ + +GF+E SN N + E+ +M Sbjct: 180 NPAGLQRFGENL-YLETMSSGVPNPGIPGT-----NGIGLLNQGFVETSNVNVVEELVEM 233 Query: 214 IHLTQKF 220 I + + Sbjct: 234 IQTQRAY 240 >gi|283784085|ref|YP_003363950.1| lateral flagellar hook protein [Citrobacter rodentium ICC168] gi|282947539|emb|CBG87091.1| lateral flagellar hook protein [Citrobacter rodentium ICC168] Length = 400 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ FS A+ D Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTDFS----AMYAD-SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 GS +STG LD A+ +F + +S I TR G F+ +G +V+ASG Sbjct: 57 AQSIARGGSMVSTGNALDLAINNGGFFVMCDSAGNITYTRAGSFETDKNGYIVNASGACL 116 Query: 121 --YPV 123 YPV Sbjct: 117 QGYPV 121 >gi|312148533|gb|ADQ31192.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi JD1] Length = 265 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 115/263 (43%), Gaps = 40/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIATM 158 LV+ G Y VL P + Q + E+G +S K + I Sbjct: 128 LVTNQG-YKVLPNILFPEEYIQNS--ITISEEGIVSVKIDTSNEPIELGQIEISRFINPA 184 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL ++ + + +E +G I P + G +++G LE SN + EM MI + Q Sbjct: 185 GLSAIGSN---LFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVTMI-VAQ 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + + +ML N+ Sbjct: 240 RAYEINSKAIQTSDNMLGIANNL 262 >gi|205355539|ref|ZP_03222310.1| putative flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346773|gb|EDZ33405.1| putative flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 270 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNSAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|13472592|ref|NP_104159.1| flagellar hook protein FlgE [Mesorhizobium loti MAFF303099] gi|14023338|dbj|BAB49945.1| flagellar hook protein; FlgE [Mesorhizobium loti MAFF303099] Length = 418 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLST ADN++N+DT G++ +FS ++ G + I Q +S Sbjct: 10 GVSGMNAQANRLSTTADNIANSDTTGYKRSSAEFSTLIMPSTGGAYNSGGVTTTIRQAVS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G T + D A+ GD +F ++ P G LTR G F G LV+ Sbjct: 70 -----------DPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPFLTRAGAFVPDAQGRLVN 118 Query: 117 ASG 119 A+G Sbjct: 119 AAG 121 >gi|158423059|ref|YP_001524351.1| putative flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] gi|158329948|dbj|BAF87433.1| putative flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] Length = 257 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 28/229 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GL AQ+ +++TVADN +N T G R + + + + VA+G + Sbjct: 19 GLRAQVV---KVATVADNTANARTPGHRKVAAETTSAPAG---------AGVATGLRHYI 66 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV-TDDGSLVSASG----KY 121 G+ +TG+ D + GD +F + +G +LTR G F G L +A+G Sbjct: 67 SSAGTASATGSPTDMMVSGDGFFMVSDGKGNTLLTRSGNFAFDAQSGQLKNAAGYALMAT 126 Query: 122 PVLDMASVPIQI-PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS-----QGFVRRENS 175 P A P+Q+ ++ VG G ++ + LY + ++ G Sbjct: 127 PNGGGAPTPVQLTAEQASSLKVGADGTLASTDADGRSQALYRIPLATTANPDGMTPVAGD 186 Query: 176 GISPNIPPTPLED-LSGV---TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P P +SG T++ G+LEDSN + EM ++ F Sbjct: 187 AFQPGSASGPARTFVSGQGPGTIRAGYLEDSNVDMATEMTDLVTSQASF 235 >gi|241589578|ref|YP_002979603.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] gi|240868290|gb|ACS65949.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] Length = 261 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 37/253 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---------IDQKIS 57 A + +L V++N++N +T GF+ + F +++ GA + I Sbjct: 14 AQQTQLDVVSNNLANVNTTGFKRSRAVFEDLLYQNAREPGAQSSQQTALPSGMQIGTGTR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ + + G+ TG D A+ G+ +F ++ P G + TRDG F+++ G LV+ Sbjct: 74 IVATSRLH---SQGNLSKTGNATDVAINGNGFFQVQRPDGTLAYTRDGNFQISAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS-------QKGKVIATMGLYSVDM 165 +SG Y V VP KD + V G ++ Q + GL S+ Sbjct: 131 SSG-YLVQPAMMVPRNATSLMIGKDGVVTVTTPGMVNRTQVGAFQLANFVNPAGLRSLGE 189 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + + E SG N+ P + G+ + + ++E SN N + EM Q+I TQ+ I + Sbjct: 190 NL-YAETEASG-GANL-AVPGGNGLGM-LHQNYVETSNVNVVEEMIQLIQ-TQRAYEINS 244 Query: 226 LIDENEKSMLEAI 238 + MLE I Sbjct: 245 KAVQTADRMLEKI 257 >gi|90408061|ref|ZP_01216232.1| flagellar basal-body rod protein FlgF [Psychromonas sp. CNPT3] gi|90310818|gb|EAS38932.1| flagellar basal-body rod protein FlgF [Psychromonas sp. CNPT3] Length = 248 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 20/226 (8%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLSKEVGSFIST 76 L+ A+N++N + GF++ + + + A + ++ +A G+ + E G T Sbjct: 19 LAIHANNLANANKTGFKS-SFEQARSMQAYGEGLPTRVFSLAENPGQNF---ESGILQMT 74 Query: 77 GTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 +LD +++G+ WF ++S G +TR G + +G L+ ++G VL PI IP Sbjct: 75 QRDLDISIKGEGWFMVDSKMGGQAMTRAGGLNINPEGFLIDSTGNK-VLSQKGAPIFIPL 133 Query: 136 KDEIFNVGEKG--EISQKG------KVIATMGLYSVDMSQGFVRRENSGISPNIPPT-PL 186 E FN+ + G EI +G + IA + L + ++ + R G+ I P+ Sbjct: 134 PVEKFNIRKDGMVEIRPEGAPADAMEEIAQIKLVNPNIRD--ILRGEDGLYRRIDGNDPI 191 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 D + V+++ G LE SN N E+ +I+L ++F+ ++ + E+ Sbjct: 192 VD-AKVSIESGSLEASNVNMSSELTGLINLQRQFDMQVKMMKKAEE 236 >gi|194014627|ref|ZP_03053244.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Bacillus pumilus ATCC 7061] gi|194013653|gb|EDW23218.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Bacillus pumilus ATCC 7061] Length = 263 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 25/261 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND-- 51 M S G++ + +L VA+N++N +T G++ ++ F ++V G N+ Sbjct: 1 MLRSLYSGISGMKNFQTKLDVVANNVANVNTHGYKKSRITFKDMVSQTISSSGGPTNNSG 60 Query: 52 -IDQKISFVASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 I+ K + S + K G+ +T + DF + GD +F +E ++ TR G F Sbjct: 61 SINSKQVGLGSSLSSIDKIMSAGASQNTDRDYDFYINGDGFFRIEKQGEVLYTRAGNFTR 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVD 164 +GSL ++ G Y VL M I IP +VG G IS + + + L S Sbjct: 121 DSEGSLTTSDGNY-VLGMNGQKITIPDGISSVSVGPDGTISVVENNVSRNVGQVSLVSFS 179 Query: 165 MSQG-------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + G R+ S +P+ P P E +G+ ++ G LE SN + E +MI Sbjct: 180 NAAGLDKVGENLYRQTLSSGAPSNPIVPGEQGTGI-IQTGRLEMSNVDLTDEFTEMIIAQ 238 Query: 218 QKFNSITTLIDENEKSMLEAI 238 + F S I +++ + E + Sbjct: 239 RGFQSNAKTITTSDEILQELV 259 >gi|260768782|ref|ZP_05877716.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|260616812|gb|EEX41997.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] Length = 397 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GF+ + +F V Q G Sbjct: 2 SFNIALSGLNASNQELNTISNNIANVSTTGFKESRTEFGSVYNG-----QQAGGVQVMGI 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + GS +TG LD AL G +F ++ G + TR G F + G+++S +G Sbjct: 57 SQNFEATGSMSATGRSLDMALTGSGFFVVQDKNGQLSYTRSGVFGLDSQGNVISNTG 113 >gi|317153844|ref|YP_004121892.1| flagellar basal-body rod protein FlgG [Desulfovibrio aespoeensis Aspo-2] gi|316944095|gb|ADU63146.1| flagellar basal-body rod protein FlgG [Desulfovibrio aespoeensis Aspo-2] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 35/267 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQ 54 M S +A++ + T+++N++N +T GF+ + +F ++ + + Sbjct: 1 MMRSLWTAATGMVAMQTHIDTLSNNLANVNTTGFKKSRAEFEDLMYQTLQIAGTETQSGG 60 Query: 55 KISF---VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 ++ V G +S G F +TG LD A+EG+ +F ++ + TRDG FK Sbjct: 61 RLPVGMQVGMGVRPVSVHKFFTQGDFKNTGNPLDIAIEGEGFFLVDMNGEDVYTRDGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD--- 164 + ++G +V+A G + IP + + E G IS K A + +D Sbjct: 121 LDNEGRVVTAGGH-----VLQPEFTIPPETVSVVITETGHISALDKDGAALAETDIDIYR 175 Query: 165 ---------MSQGFVR-RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + F R E SG + + TP ++ G T+ + FLE SN + EM +I Sbjct: 176 FQNPAGLTAIGRNFYRGSEASGDA--VAGTPGDENFG-TLAQAFLEGSNVEMVDEMVGLI 232 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + Q+ I + ML+ NI Sbjct: 233 -VGQRAYEINSKAITTSDGMLQTAINI 258 >gi|238762359|ref|ZP_04623330.1| Lateral flagellar hook protein (FlgE-like) [Yersinia kristensenii ATCC 33638] gi|238699344|gb|EEP92090.1| Lateral flagellar hook protein (FlgE-like) [Yersinia kristensenii ATCC 33638] Length = 397 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A+ ++L+T+++N++N+ T GF++ + +FS + Q + SG Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSATKGFKSGRTEFSSMYAQ-----SQPLGVGVSGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 ++ GS TG +D A+ G+ +F +++ G TR G F ++G LV+ASG Sbjct: 57 SQSIRKEGSIDRTGNAMDLAISGNGFFVVKNSNGDEAYTRAGMFTTDNNGLLVNASG 113 >gi|24374758|ref|NP_718801.1| flagellar hook protein FlgE [Shewanella oneidensis MR-1] gi|24349424|gb|AAN56245.1|AE015762_2 flagellar hook protein FlgE [Shewanella oneidensis MR-1] Length = 453 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 20/150 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDSA 121 Query: 119 GK----YPV----------LDMASVPIQIP 134 G +PV L A P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTAK-PVQIP 150 >gi|24374755|ref|NP_718798.1| flagellar basal body rod protein FlgG [Shewanella oneidensis MR-1] gi|24349419|gb|AAN56242.1|AE015761_12 flagellar basal-body rod protein FlgG [Shewanella oneidensis MR-1] Length = 262 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + +S +++N++N TVG++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTTAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y + PI IP+ V +GE+S K A + F+ Sbjct: 128 IVTPGSGY----VLQPPITIPEDATSITVSAEGEVSVKTPGAAENQVVGQLSMTDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|187478185|ref|YP_786209.1| flagellar hook protein [Bordetella avium 197N] gi|115422771|emb|CAJ49299.1| flagellar hook protein [Bordetella avium 197N] Length = 406 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 13/141 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A Q L + +N++N+ T+GF++ F++V + + K++ V + Sbjct: 3 FGQGLSGLQAASQNLDVIGNNIANSGTIGFKSGSTSFADVYANSRVGLGVKVAAV--NQR 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWF--ALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 + + G+ TG E D A++G F ++ I+ TR G F + + + +A G Sbjct: 61 FTA---GTVSGTGGEYDIAIDGAKGFFRVTDASDNIVYTRSGEFGIDKNFFITNAMGYRL 117 Query: 120 -KYPVLDMAS--VPIQIPQKD 137 YPV + + VP+Q+PQ + Sbjct: 118 TGYPVGGIGTNLVPLQVPQAN 138 >gi|315648129|ref|ZP_07901230.1| fagellar hook-basal body protein [Paenibacillus vortex V453] gi|315276775|gb|EFU40118.1| fagellar hook-basal body protein [Paenibacillus vortex V453] Length = 274 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/278 (23%), Positives = 114/278 (41%), Gaps = 48/278 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++ + Q +S V Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDI-------LSQTMSGVT 53 Query: 61 SGKEYLSKEV--------------------GSFISTGTELDFALEGDAWFAL---ESPRG 97 G + S V GS ++T D ++GD +F + E Sbjct: 54 PGTDDPSGGVNAKQIGLGVSIGSIDTMHTPGSAMTTHNPTDLRIDGDGFFMVKLSEDQEV 113 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----G 152 LTR G F V +LV++ G VLD A PIQ+ F + + G I QK Sbjct: 114 PFLTRAGDFHVDVARNLVTSDGML-VLDSAGDPIQLGDDVTAFTIAQNGAIIQKLSDGTT 172 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV------------TVKRGFLE 200 + A +G+ + +G + + + P D++ V + G LE Sbjct: 173 EAGAIIGVAKIPNPEGLEKIGGNMYRVTLNAVPDGDVAAVMFEGNDAEEGTGAIIAGQLE 232 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 SN + E +MI + F + + +I +++ + E + Sbjct: 233 MSNVDLTSEFSEMIVAQRGFQANSRIITTSDEVLQEVV 270 >gi|315180485|gb|ADT87399.1| flagellar hook protein E [Vibrio furnissii NCTC 11218] Length = 397 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GF+ + +F V Q G Sbjct: 2 SFNIALSGLNASNQELNTISNNIANVSTTGFKESRTEFGSVYNG-----QQAGGVQVMGI 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + GS +TG LD AL G +F ++ G + TR G F + G+++S +G Sbjct: 57 SQNFEATGSMSATGRSLDMALTGSGFFVVQDKNGQLSYTRSGVFGLDSQGNVISNTG 113 >gi|302185583|ref|ZP_07262256.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae 642] Length = 445 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 10/123 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIK-----NDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ +++F+ + +I+ + ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRIEFADQYAQSIRGTSGGTSVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 A +++ GS + TG LD A+ G+ +F L + + TR G F DG +V+ Sbjct: 62 TAAVSQQF---SQGSLTTGTGNSLDLAINGNGFFMLSNKGDSLYTRAGAFHTDKDGYVVN 118 Query: 117 ASG 119 +SG Sbjct: 119 SSG 121 >gi|328913715|gb|AEB65311.1| putative flagellar hook-basal body protein [Bacillus amyloliquefaciens LL3] Length = 274 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 39/269 (14%) Query: 9 LAAQLAL---EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---------- 55 LAA AL +Q++ TV+ N+SN+DT G++ +FSE++ + ID K Sbjct: 7 LAASTALNQLQQQMDTVSSNLSNSDTTGYKARDSRFSELIRQQYDQIDDKKENSPNMRKT 66 Query: 56 -----ISFVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVT 109 + A L GS T +LD A + E+ + TRDG + Sbjct: 67 PPGLRLGAGAMMTPQLDSGQGSIKKTDRDLDIAFTSPYQYLQAEAGGRRVYTRDGSLTLK 126 Query: 110 DDG------SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--M 158 G L++A G P+LD PIQI + + G ++ Q G T + Sbjct: 127 PAGGNDRLLQLMTAGGN-PILDENGQPIQIDSSLTKLKISKTGTLTASDQTGTRSQTFNL 185 Query: 159 GLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQ 212 G+ +V+ Q ++ S N + +E+L+G + +++G LE+SN + EM Sbjct: 186 GIVNVNNPQELHAEGDNLFSVNGTGASAIEELTGAKRQEIGMEQGALENSNVDMSKEMTD 245 Query: 213 MI--HLTQKFNSITTLIDENEKSMLEAIR 239 +I + + NS T + + ++ ++R Sbjct: 246 LIVSQRSYQLNSRTITLGDQMLGLINSVR 274 >gi|147678402|ref|YP_001212617.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] gi|146274499|dbj|BAF60248.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] Length = 264 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 117/258 (45%), Gaps = 39/258 (15%) Query: 15 LEQRLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKNDIDQK-------ISFVASG- 62 L+ R+ +V++N++N T G++ TI+ F E++ + I +K I ++G Sbjct: 15 LQARVESVSNNLANASTPGYKREDITIR-SFPEMLLIRQGGIQRKPAGTPEAIGTASNGV 73 Query: 63 ---KEYLSKEVGSFISTGTELDFALEGDAWFAL-----ESPRGIILTRDGRFKVTDDGSL 114 + ++ G TG D A++G A+FA+ ESP + TR+G FK+ +G L Sbjct: 74 LLSELFIDHTQGDLRETGDPADVAIKGPAFFAVSAPGPESPDRVCYTRNGAFKIDQEGYL 133 Query: 115 VSASGKYPVLDMASVPIQIPQKDEI--FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 V+A G + + + I+ Q ++ ++ G + G + L D +++ Sbjct: 134 VTAGGYRVLGEDGEIRIEDFQLNDPARLSISPDGSVRIDGMEAGRLMLVEFD-DVNSLQK 192 Query: 173 ENSGISPNIPPTPLEDLSGV-------TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 G+ ED G +V +G+LE N N + EM +I T+ + + Sbjct: 193 VGEGL--------FEDPQGTGRPAVSSSVCQGYLEAPNVNVVDEMVSLITATRAYEANQR 244 Query: 226 LIDENEKSMLEAIRNIAS 243 +I ++ + +A+ + S Sbjct: 245 IIQSQDELLAKAVNQVGS 262 >gi|315127353|ref|YP_004069356.1| flagellar hook protein E [Pseudoalteromonas sp. SM9913] gi|315015867|gb|ADT69205.1| flagellar hook protein E [Pseudoalteromonas sp. SM9913] Length = 440 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 19/138 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 SFNI L A ++ L A+N++N +T GF+ + +F++V G KN + Sbjct: 2 SFNIALTGLAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSAGKTKNGDGVQT 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGS 113 + VA +++ GS T LD A+ G+ +FA G TR G FK+ D Sbjct: 62 TMVA--QQF---HQGSLQFTNNSLDLAITGEGYFATSQDLGAQDFTYTRAGAFKLNKDNF 116 Query: 114 LVSASGKYPVLDMASVPI 131 +V A G + + S P+ Sbjct: 117 VVDAKGNF----LQSFPV 130 >gi|330811235|ref|YP_004355697.1| flagellar hook protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379343|gb|AEA70693.1| Putative flagellar hook protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 432 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 20/127 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A ++L +N++N T GF++ + +F +V A K + SG Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFEDVYSATK---------LGSGS 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + + V G +TG LD ++G +F L + + TR G FK +G Sbjct: 53 KTVGNGVRLANVSQQFGQGDVNNTGNVLDMGIQGQGFFVLSNDGSLSYTRAGTFKTDKEG 112 Query: 113 SLVSASG 119 + ++ G Sbjct: 113 YITNSDG 119 >gi|27904201|gb|AAO27034.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 262 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 115/231 (49%), Gaps = 32/231 (13%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 +A+N++N T GF++ +++ ++ + K+ Q+ +F+ K+Y +K G+ T LD Sbjct: 36 IANNITNISTPGFKS-ELELKILLPSQKDQNSQEDNFLY--KQYKNKNQGTLRRTNQPLD 92 Query: 82 FAL-EGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 A+ + + WF ++ P+ I T++G FK+ + L + +PVL I IP+ + I Sbjct: 93 CAIIDKNDWFVIKIDPKTIAYTKNGHFKINSNRQLTVQN--HPVLGEDG-EIFIPKNENI 149 Query: 140 -------FNVGEKGEISQKGKVIATMGLYSVDMSQG-------FVRRENSGISPNIPPTP 185 N+ + + K +A L + D++ ++ +N+ ++ T Sbjct: 150 VISSDGYINIIKNNVLQHK---VAQFKLKNFDINDLTYKTNGLYLLNKNNKLNH----TN 202 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEKS 233 +++S + + G LEDSN N M +MI +KF+ I ++ +EN ++ Sbjct: 203 HKNVSNIKLVSGILEDSNVNLEENMVEMISNARKFDMQIKILSMYNENTQA 253 >gi|308175373|ref|YP_003922078.1| flagellar hook-basal body protein [Bacillus amyloliquefaciens DSM 7] gi|307608237|emb|CBI44608.1| putative flagellar hook-basal body protein [Bacillus amyloliquefaciens DSM 7] gi|328555347|gb|AEB25839.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens TA208] Length = 273 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 39/269 (14%) Query: 9 LAAQLAL---EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---------- 55 LAA AL +Q++ TV+ N+SN+DT G++ +FSE++ + ID K Sbjct: 6 LAASTALNQLQQQMDTVSSNLSNSDTTGYKARDSRFSELIRQQYDQIDDKKENSPNMRKT 65 Query: 56 -----ISFVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVT 109 + A L GS T +LD A + E+ + TRDG + Sbjct: 66 PPGLRLGAGAMMTPQLDSGQGSIKKTDRDLDIAFTSPYQYLQAEAGGRRVYTRDGSLTLK 125 Query: 110 DDG------SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--M 158 G L++A G P+LD PIQI + + G ++ Q G T + Sbjct: 126 PAGGNDRLLQLMTAGGN-PILDENGQPIQIDSSLTKLKISKTGTLTASDQTGTRSQTFNL 184 Query: 159 GLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQ 212 G+ +V+ Q ++ S N + +E+L+G + +++G LE+SN + EM Sbjct: 185 GIVNVNNPQELHAEGDNLFSVNGTGASAIEELTGAKRQEIGMEQGALENSNVDMSKEMTD 244 Query: 213 MI--HLTQKFNSITTLIDENEKSMLEAIR 239 +I + + NS T + + ++ ++R Sbjct: 245 LIVSQRSYQLNSRTITLGDQMLGLINSVR 273 >gi|256830176|ref|YP_003158904.1| flagellar basal-body rod protein FlgG [Desulfomicrobium baculatum DSM 4028] gi|256579352|gb|ACU90488.1| flagellar basal-body rod protein FlgG [Desulfomicrobium baculatum DSM 4028] Length = 260 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 34/231 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQKISFVASG 62 + +A + L A+N++N +T GF+ + +F + + G+ + D+ + G Sbjct: 10 SGMIAQQLNLDVTANNLANVNTTGFKKNRAEFEDLMYQNMKIAGSSNQEGDRLPVGMQVG 69 Query: 63 KEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 V G F +TG +LD +EGD +F ++ TR G FK+ DG +V+ Sbjct: 70 MGVRPVSVHKIFTQGDFQNTGNQLDLVIEGDGFFRVDRGGEESYTRSGAFKLDSDGRIVT 129 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-----LYSVDMSQG--- 168 +G +P+ VP P+ I V E G ++ K A + +Y+ G Sbjct: 130 DNG-HPLQPEFIVP---PETQNIV-VTEDGRLTCVDKAGAEIAGTDIPVYTFVNPAGLKA 184 Query: 169 -----FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +V+ + SG + + P E+ +G T+ +GFLE SN + EM MI Sbjct: 185 MGRNLYVQTDGSGEA--VESVPGENNAG-TLAQGFLEMSNVEIVEEMVNMI 232 >gi|298529926|ref|ZP_07017328.1| flagellar basal-body rod protein FlgG [Desulfonatronospira thiodismutans ASO3-1] gi|298509300|gb|EFI33204.1| flagellar basal-body rod protein FlgG [Desulfonatronospira thiodismutans ASO3-1] Length = 260 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 32/252 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKISF--- 58 G+AAQ + + ++N++N +T GF+ + +F ++ V +N ++ Sbjct: 11 GMAAQ---QMNIDVTSNNLANVNTDGFKKSQAQFEDLMYQTLKVAGTENLTGDRVPTGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 V G LS G + TG LD +EGD +F + + + TR G FK DG + Sbjct: 68 VGMGTNPLSVHKIFTQGDYKQTGNPLDLTIEGDGFFQVMANDEVRYTRAGSFKPDQDGRI 127 Query: 115 VSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSVD 164 V+A+G YP+ +P + + ++ I V + +G++ + GL S Sbjct: 128 VTANG-YPLQPEFHIPEDTARVHVDEQGNIVCVDGDDNVIAEGEIPIYRFMNPAGLNSAG 186 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + E P P E+ G +++ G LE SN + EM MI + Q+ I Sbjct: 187 RN---LYSETEASGPATEGVPGEENFG-SIRSGALESSNVEIVDEMVNMI-IGQRAYEIN 241 Query: 225 TLIDENEKSMLE 236 + + ML+ Sbjct: 242 SKAIQTSDQMLQ 253 >gi|218249434|ref|YP_002375273.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi ZS7] gi|218164622|gb|ACK74683.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi ZS7] Length = 265 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 38/262 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ------KDEIFNVG--------EKGEISQKGKVIATMG 159 LV++ G Y VL P + Q K+ I +V E G+I + + I G Sbjct: 128 LVTSQG-YKVLPNILFPEEYIQNSITISKEGIVSVKIDTSNEPIELGQI-EISRFINPAG 185 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L ++ + + +E +G I P + G +++G LE SN + EM MI + Q+ Sbjct: 186 LSAIGSN---LFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVTMI-VAQR 240 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + + +ML N+ Sbjct: 241 AYEINSKAIQTSDNMLGIANNL 262 >gi|51599025|ref|YP_073213.1| flagellar basal body rod protein FlgG [Borrelia garinii PBi] gi|51573596|gb|AAU07621.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 265 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 20/158 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGSYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 LV++ G Y VL P + Q + E+G +S K Sbjct: 128 LVTSQG-YKVLPNIFFPEEYIQNS--ITISEQGIVSVK 162 >gi|253681880|ref|ZP_04862677.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] gi|253561592|gb|EES91044.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] Length = 263 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 38/242 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV----------GAIKNDIDQ 54 GL Q A++ +++N++N+ TVG++ I KF +V+ ++NDI + Sbjct: 11 GLINQEAIQ---DVISNNLANSTTVGYKKDDLITRKFQDVMLHNYDKVVRGKNVRNDIGE 67 Query: 55 KISFVASGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGI----ILTRDGRFKVT 109 +S + E + G TG DFA++G+ +F + + + TRDG F + Sbjct: 68 -LSMGSKIDETCTNYSQGVLEDTGKSTDFAIQGNGFFVVSRNDRVNNQNLYTRDGHFHID 126 Query: 110 DDGSLVSASGKY----PVLDMASVPIQI-----PQKDEIFNVGEKGEISQKGKVIATMGL 160 +G LV+ SG + + A PI I P + + GEI GK + + Sbjct: 127 RNGYLVNGSGDKVMGKNLTNGAISPINILVNNSPAR---MACNDMGEIYLNGKPAFKIQV 183 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + R+ + P D V VK+ +LE SN N M E+ M+ + F Sbjct: 184 VNFENYKSL-RKIQDNLYSGTNPKETND---VIVKQNYLEKSNVNVMAEVSDMMMTMRNF 239 Query: 221 NS 222 S Sbjct: 240 ES 241 >gi|240144760|ref|ZP_04743361.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|257203281|gb|EEV01566.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|291534610|emb|CBL07722.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1] Length = 272 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 29/176 (16%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-- 70 +A + + +++N+SN +TVG++ K++F + + I + + ++ +S +V Sbjct: 13 IAQQSNVDNISNNLSNVNTVGYKQEKMEFKSL---LYQTIQTRTTSANGEEKPISAQVGL 69 Query: 71 -------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF--KVTDDGSL 114 GS +++ DFA+ GD +FA+ G TR G F V G+L Sbjct: 70 GTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFVWSVNAGGTL 129 Query: 115 VSASGK-YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT--MGLYSVDMSQ 167 + + YPVLD + PI +P EK +S+ GK+ T G Y VDM+Q Sbjct: 130 TLCTNEGYPVLDSNNQPINLPAGIS----AEKVIVSENGKMGYTNAAGTY-VDMNQ 180 >gi|74101658|gb|AAZ99748.1| FlgEL [Aeromonas hydrophila] Length = 397 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 18/123 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK------NDIDQKIS 57 SF+IGL+ A+ Q LS +++N++N T GF++ + +F+ + G + N++ Q Sbjct: 2 SFSIGLSGLRAVNQELSVISNNVANASTAGFKSSRAEFAAIYGGGQAGGVEMNNVSQNF- 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 G TG LD A+ G +F L+ G TR G F+ + L + Sbjct: 61 ----------DRNGDVTRTGRGLDLAISGSGFFVLKDSNGQTSYTRAGMFQRDPNNYLTT 110 Query: 117 ASG 119 ASG Sbjct: 111 ASG 113 >gi|161511182|ref|NP_777929.2| flagellar basal body rod protein FlgF [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395817|sp|Q89AH8|FLGF_BUCBP RecName: Full=Flagellar basal-body rod protein flgF Length = 248 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 115/231 (49%), Gaps = 32/231 (13%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 +A+N++N T GF++ +++ ++ + K+ Q+ +F+ K+Y +K G+ T LD Sbjct: 22 IANNITNISTPGFKS-ELELKILLPSQKDQNSQEDNFLY--KQYKNKNQGTLRRTNQPLD 78 Query: 82 FAL-EGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 A+ + + WF ++ P+ I T++G FK+ + L + +PVL I IP+ + I Sbjct: 79 CAIIDKNDWFVIKIDPKTIAYTKNGHFKINSNRQLTVQN--HPVLGEDG-EIFIPKNENI 135 Query: 140 -------FNVGEKGEISQKGKVIATMGLYSVDMSQG-------FVRRENSGISPNIPPTP 185 N+ + + K +A L + D++ ++ +N+ ++ T Sbjct: 136 VISSDGYINIIKNNVLQHK---VAQFKLKNFDINDLTYKTNGLYLLNKNNKLNH----TN 188 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEKS 233 +++S + + G LEDSN N M +MI +KF+ I ++ +EN ++ Sbjct: 189 HKNVSNIKLVSGILEDSNVNLEENMVEMISNARKFDMQIKILSMYNENTQA 239 >gi|253702432|ref|YP_003023621.1| flagellar basal body rod protein FlgG [Geobacter sp. M21] gi|251777282|gb|ACT19863.1| flagellar basal-body rod protein FlgG [Geobacter sp. M21] Length = 262 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 38/230 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEYL 66 A + + VA N++N T GF+ + F +++ GA + + + G Sbjct: 14 AQQLNIDVVAHNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNATTIPTGIQVGLGVR 73 Query: 67 SKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 V G+ I+TG ELD A++GD + ++ G TR G K G +V++ G Sbjct: 74 PGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQSDGSTAYTRAGALKRDGQGRVVTSDG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIA----TMGLYSVDMSQG----- 168 + PV+ + IP VG G +S Q G+ A T+ L S G Sbjct: 134 Q-PVIP----EVLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQLASFSNPAGLNAIG 188 Query: 169 ---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 F+ ++SG + T +G+ T+++GFLE+SN + M EM MI Sbjct: 189 KNLFLPTDSSGAA----TTGTAGQNGLGTIEQGFLENSNVSIMEEMVSMI 234 >gi|54307270|ref|YP_128290.1| flagellar hook protein FlgE [Photobacterium profundum SS9] gi|46911690|emb|CAG18488.1| Hypothetical flagellar hook protein FlgE [Photobacterium profundum SS9] Length = 472 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISF 58 S NIG++ +A +++++++ N++N T G+++ + +F ++ G N ++ Sbjct: 2 SMNIGMSGLIATSEQMNSISHNIANVGTAGYKSSRTEFQDIYAPEFGGGEMNGVE----- 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 VA+ ++ G+ TG D A+ G+ +F +E+ + TR+G F + DG+LV++ Sbjct: 57 VAAIRQSFKN--GTTTPTGRNGDLAINGEGFFMVENKGQQMFTRNGVFNLDKDGNLVASD 114 Query: 119 GKY 121 G + Sbjct: 115 GSH 117 >gi|146281771|ref|YP_001171924.1| flagellar hook protein FlgE [Pseudomonas stutzeri A1501] gi|145569976|gb|ABP79082.1| flagellar hook protein FlgE [Pseudomonas stutzeri A1501] Length = 438 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN+ L+ A L+ +N++N T GF+ + +F+++ +G+ N + ++ Sbjct: 2 TFNVALSGLNAASTDLNVTGNNIANVGTTGFKASRAEFADLYATSMLGSGGNAVGSGVTT 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G+ +TG LD A+ G+ +F + + ++ TR G FK D+G ++++ Sbjct: 62 ADIAQQFTQ---GNITNTGNSLDLAISGNGYFMVSNNGSMLYTRAGAFKTDDEGYVINSE 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|114570497|ref|YP_757177.1| flagellar basal body rod protein FlgG [Maricaulis maris MCS10] gi|114340959|gb|ABI66239.1| flagellar basal-body rod protein FlgG [Maricaulis maris MCS10] Length = 261 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 124/260 (47%), Gaps = 40/260 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF---- 58 A QL +E +++N++N +T GF+ + +F +++ GA +D + Sbjct: 13 AQQLNVE----VISNNLANMNTTGFKRQRAEFQDLLYQNVQQMGAASSDAGTIVPTGVQV 68 Query: 59 ---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 V + Y E G+ +TG D A+ G+ +F ++ P G TR G F V+ DG L Sbjct: 69 GLGVQTASIYRITEQGALSNTGNPFDLAVSGEGYFRVQMPDGSDGFTRAGNFAVSGDGEL 128 Query: 115 VSASGKYPVLDMASVP-----IQIPQKDEI-FNVGEKGEISQKGKV-IATM----GLYSV 163 V++ G Y V ++P I+I + ++ + + ++ G++ +AT GL ++ Sbjct: 129 VTSEG-YTVAPGIAIPNGARQIEINIQGQVQVQIDGQTDMQTVGQIELATFFNQAGLEAI 187 Query: 164 DMSQGFVRRENSG-ISPNIPPTP-LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + F+ SG S P +P D +++GF+E SN NS+ E+ +I + + Sbjct: 188 GGNL-FLETAASGSASLGTPGSPGFGD-----IQQGFVETSNVNSVSEITALIQAQRAYE 241 Query: 222 SITTLIDENEKSMLEAIRNI 241 +I +++ M+ A N+ Sbjct: 242 MNARVITASDE-MMAASSNL 260 >gi|332284021|ref|YP_004415932.1| flagellar basal body rod protein FlgG [Pusillimonas sp. T7-7] gi|330427974|gb|AEC19308.1| flagellar basal body rod protein FlgG [Pusillimonas sp. T7-7] Length = 261 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 22/156 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL +Q + + +++N++N +T GF+ + F +++ GA +Q S Sbjct: 11 GLESQ---QTNMDVISNNLANVNTTGFKRSRANFEDLMYQTIRQPGAQVGAANQLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ TG +D A++G + +E P G TRDG +V +G Sbjct: 68 IGTGVRTVATERIHTQGNLKDTGNSMDIAIQGKGFLQVEMPDGTFAYTRDGSLQVDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 LV+A G YP+ PI IP + G +S Sbjct: 128 LVTAGG-YPI----QPPINIPDNALTITIARDGMVS 158 >gi|322832566|ref|YP_004212593.1| flagellar basal-body rod protein FlgG [Rahnella sp. Y9602] gi|321167767|gb|ADW73466.1| flagellar basal-body rod protein FlgG [Rahnella sp. Y9602] Length = 260 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + + +A+N++N T GF+ + F +++ GA ++ S Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSEQTNLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G +S E G+ T D A++G+ +F ++ P G TRDG F+V +G Sbjct: 68 IGTGVRPVSTERLFSQGNLSQTSNSKDIAVKGEGFFQVQLPDGTTAYTRDGSFQVDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKV-----IATMGLYS 162 LV++SG Y V+ +VP +D I +V +G+ + Q G++ I GL S Sbjct: 128 LVTSSG-YQVIPAITVPANALSMTVGRDGIVSVTTQGQTAAQQVGQLTLSTFINNSGLES 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + + S +P TP + +G+ + +G++E SN N E+ MI TQ+ Sbjct: 187 --LGENLYQETQSSGAP-TESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQ-TQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 242 INSKAVSTSDEMLQKLSQL 260 >gi|310764859|gb|ADP09809.1| Flagellar basal-body rod protein FlgF [Erwinia sp. Ejp617] Length = 245 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++A A R + ++NM+N T GFR F V ++ + + V Sbjct: 1 MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAV--PVEGETIATRALVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 Y +G TG LD AL + W A+ P G TR+G +V DG+L S +G Sbjct: 59 DSTPYHDGSMGPLNHTGRSLDVALPQNGWLAVAMPDGTEGYTRNGAIEVDRDGAL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEI 139 YP++ + P+ +P + + Sbjct: 118 -YPLMGDGA-PLTVPPQSAV 135 >gi|157738173|ref|YP_001490857.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] gi|157700027|gb|ABV68187.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] Length = 239 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 41/232 (17%) Query: 18 RLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISFVAS---------GKEY 65 RL +++N++N +T+GF+ T + F+ + +++ QK+ S Y Sbjct: 18 RLDQISNNLANVNTLGFKQEGTTETTFNYYLDKMESQ--QKLMLKESVVTNNIPKIDSRY 75 Query: 66 LSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 + E+G + TG LDFAL E D +F +++ G I+ TRDG FK DG LV ++G V Sbjct: 76 TNAEMGPIVMTGNSLDFALNEPDTFFKIQNENGDIVYTRDGAFKNL-DGFLVDSNGN-NV 133 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 L+ + I V E G SQ +G+ + +N+ + N+ Sbjct: 134 LNADNEAI----------VVEDGFESQ-------IGVAKTPYTNLEKMGDNTYLVKNVDE 176 Query: 184 TP-LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN----SITTLIDEN 230 +E+ G V RG +E SN NS+ M ++I ++F+ +I T+ D N Sbjct: 177 AEQIENNDGRIV-RGAVEQSNVNSVTAMVELIDAHRRFDQSQRAIKTIDDLN 227 >gi|260466603|ref|ZP_05812791.1| flagellar basal body FlaE domain protein [Mesorhizobium opportunistum WSM2075] gi|259029609|gb|EEW30897.1| flagellar basal body FlaE domain protein [Mesorhizobium opportunistum WSM2075] Length = 418 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLST ADN++N+DT G++ +FS ++ G + I Q +S Sbjct: 10 GVSGMNAQANRLSTTADNIANSDTTGYKRSSAEFSTLIMPSTGGAYNSGGVTTTIRQAVS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G T + D A+ GD +F ++ P G LTR G F G LV+ Sbjct: 70 -----------DPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPYLTRAGAFVPDAQGRLVN 118 Query: 117 ASG 119 A+G Sbjct: 119 AAG 121 >gi|259907635|ref|YP_002647991.1| Flagellar basal-body rod protein FlgF [Erwinia pyrifoliae Ep1/96] gi|224963257|emb|CAX54741.1| Flagellar basal-body rod protein FlgF [Erwinia pyrifoliae Ep1/96] gi|283477477|emb|CAY73393.1| Flagellar basal-body rod protein flgF [Erwinia pyrifoliae DSM 12163] Length = 245 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++A A R + ++NM+N T GFR F V ++ + + V Sbjct: 1 MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAV--PVEGETIATRALVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 Y +G TG LD AL + W A+ P G TR+G +V DG+L S +G Sbjct: 59 DSTPYHDGSMGPLNHTGRSLDVALPQNGWLAVAMPDGTEGYTRNGAIEVDRDGAL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEI 139 YP++ + P+ +P + + Sbjct: 118 -YPLMGDGA-PLTVPPQSAV 135 >gi|57237000|ref|YP_178801.1| flagellar basal-body rod protein [Campylobacter jejuni RM1221] gi|86149760|ref|ZP_01067989.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|57165804|gb|AAW34583.1| flagellar basal-body rod protein [Campylobacter jejuni RM1221] gi|85839578|gb|EAQ56838.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|315058160|gb|ADT72489.1| Flagellar basal-body rod protein flgF [Campylobacter jejuni subsp. jejuni S3] Length = 270 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDRIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|332558507|ref|ZP_08412829.1| FlgF [Rhodobacter sphaeroides WS8N] gi|332276219|gb|EGJ21534.1| FlgF [Rhodobacter sphaeroides WS8N] Length = 251 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 18/210 (8%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASGKEYLSKEVGSFISTGTELD 81 A N++N GFR + D +F G S G TG +D Sbjct: 23 AQNLANQTVPGFRRDLTNEGDARFLKAMDAASARAFQTERGPHLFSSAPGLLNQTGEPMD 82 Query: 82 FALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP------ 134 A+ + WF ++ G L+R G ++T DG L++ +G+ +LD A PI++P Sbjct: 83 VAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNGAGEA-MLDPAMQPIELPPVRALI 141 Query: 135 --QKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 + I + G Q+ G +IAT V + + R +G P PTP + Sbjct: 142 VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTLRKDPDGRIRAGGEPL--PTPDQR-- 197 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V +G LE SN N+M E+ I L + F Sbjct: 198 -ARVLQGVLEGSNVNTMEELVSSIELQRTF 226 >gi|264676570|ref|YP_003276476.1| FlgE [Comamonas testosteroni CNB-2] gi|262207082|gb|ACY31180.1| FlgE [Comamonas testosteroni CNB-2] Length = 422 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + N++N++T GF+ + F+E+V + + S + Sbjct: 3 FQQGLSGLNAASKNLDVIGHNIANSNTTGFKASRADFAEMVASAIGSASGQSSGIGVNVA 62 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 +S++ GS STG LD A+ G+ +F ++ G I TR G F + +G+L Sbjct: 63 SVSQQFRQGSITSTGNNLDIAINGNGFFVVKQSDGSIAYTRAGNFGLDKEGNL 115 >gi|225849135|ref|YP_002729299.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium azorense Az-Fu1] gi|225644492|gb|ACN99542.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium azorense Az-Fu1] Length = 266 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 57/246 (23%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE----------VVGAIKNDIDQKIS 57 G+ AQ + L ++ N++N +TVGF+ + F + V+ + +N + I Sbjct: 11 GMEAQ---QTNLDVISHNIANVNTVGFKRSRANFEDLIYQDIRDPGVLSSTQNRVPAGIQ 67 Query: 58 F-----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 V+ + S+ GS I T LD A++GD +F +E P G TR G F++ ++ Sbjct: 68 IGLGVKVSDVAKIFSQ--GSLIKTDNPLDLAIQGDGFFKIEMPDGSEAFTRAGNFQLDNE 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT-------------- 157 G +V+ G S IQI + + N+ +S GKV+ Sbjct: 126 GYIVNPEGY-----RLSPNIQISAPETVINI----SVSPNGKVVVVRNSGGQQTTEEVGD 176 Query: 158 MGLYSVDMSQG---------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + LY M+Q F E SG P I P D G + +GFLE SN N + Sbjct: 177 IKLYRF-MNQAGLKAIGQNLFKYTEASG-EP-IEGDPNTDGFG-KITQGFLEASNVNIVE 232 Query: 209 EMGQMI 214 EM +I Sbjct: 233 EMVNLI 238 >gi|209547928|ref|YP_002279845.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533684|gb|ACI53619.1| flagellar basal-body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 262 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 38/247 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI---------SF 58 A + L +A+N++N +T GF+ + +FS+++ + N +Q + Sbjct: 13 AQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVVPEGANIGLGV 72 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSA 117 S L + G TG +LD AL G +F ++S G L TR G F D G LV+ Sbjct: 73 QTSAVRNLHLQ-GELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTI 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGF-- 169 G Y VL I IP + G++S K V+ + L G Sbjct: 132 DG-YEVLP----GITIPTGSTELTISRSGQVSAKLPGAADATVLGQLTLADFVNEAGLQP 186 Query: 170 ----VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF---NS 222 + +E + + P E+ +K+G+LE SN + + E+ ++I + + + Sbjct: 187 LGDNLFQETAASGEAVVGNPDEE-GFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSK 245 Query: 223 ITTLIDE 229 + T DE Sbjct: 246 VITTADE 252 >gi|99082800|ref|YP_614954.1| flagellar basal body rod protein FlgG [Ruegeria sp. TM1040] gi|99039080|gb|ABF65692.1| Flagellar basal-body rod protein flgG [Ruegeria sp. TM1040] Length = 261 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++AQ + R+ T+++N++N +T + + +F+++ I + + AS L Sbjct: 10 GMSAQ---QLRVETISNNLANMNTTAYNARRAEFADL---HYQQISRAGTVNASDGTVLP 63 Query: 68 KEV-----------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 V G+ TG ELD A++G+ +F + P G TRDG FK + Sbjct: 64 TGVQVGLGVRPAAVSVYLNQGALSQTGNELDLAIDGNGYFEVTLPSGETAYTRDGSFKRS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 +G +V+ G YPV S I +P+ + ++ +GE+ + + +++ L Sbjct: 124 AEGLIVTNDG-YPV----SPEITVPEDAKSISINGEGEVYAYFNDTIEAELLGQFTLSGF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +G F + E SG PN P D G +++ +LEDS+ +++ E+ ++I Sbjct: 179 TNPKGLEAMGGNLFKQTEASG-QPNTTE-PGADGIGF-LRQKYLEDSSVDAVREITELIE 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRGY 240 >gi|15887898|ref|NP_353579.1| flagellar basal body rod protein FlgG [Agrobacterium tumefaciens str. C58] gi|20141428|sp|Q44338|FLGG_AGRT5 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|15155490|gb|AAK86364.1| flagellar basal-body rod protein [Agrobacterium tumefaciens str. C58] Length = 262 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 45/240 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFVASGK 63 A + L +A+N++N +T G++ + +F++++ + N +Q I + + G Sbjct: 13 AQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQAIVPEGANIGLGV 72 Query: 64 EYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSAS 118 + + G+ I TG +LD A+ G WF +E+ G L +R G F DG+LV+ Sbjct: 73 QTSAVRNIHTQGNLIETGNKLDVAIIGQGWFQIEAADGSTLYSRAGAFNKNADGNLVTVD 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ-GFVRRENSGI 177 G Y V+ ++P + I++ G+V A +G + D +Q G + N Sbjct: 133 G-YNVIPNINIPTD----------AQDITITRTGQVTARIG-NAADFTQLGQLTIANFAN 180 Query: 178 SPNIPP--------TPL---------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P TP +D S VK+ +LE SN +++ E+ +I + + Sbjct: 181 EAGLKPLGDNLFSQTPASGAPVVGVPDDPSYGYVKQSYLEGSNVDAVKEITDLITAQRAY 240 >gi|216263448|ref|ZP_03435443.1| flagellar basal-body rod protein FlgG [Borrelia afzelii ACA-1] gi|215980292|gb|EEC21113.1| flagellar basal-body rod protein FlgG [Borrelia afzelii ACA-1] Length = 265 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 118/265 (44%), Gaps = 44/265 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVL-----------------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 LV++ G Y VL + V ++I +E +G+ EIS + + Sbjct: 128 LVTSQG-YKVLPNIFFPEEYIRDSITISEQGIVSVKIDNSNEPIELGQI-EIS---RFVN 182 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 GL ++ + + +E +G I P G +++G LE SN + EM MI + Sbjct: 183 PAGLSAIGSN---LFKETAGSGQEIAGIPGSKGMG-KLRQGILEMSNVSIAEEMVTMI-V 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + +ML N+ Sbjct: 238 AQRAYEINSKAIQTSDNMLGIANNL 262 >gi|161349955|ref|YP_733400.2| flagellar basal body rod protein FlgF [Shewanella sp. MR-4] gi|161367434|ref|YP_737389.2| flagellar basal body rod protein FlgF [Shewanella sp. MR-7] Length = 247 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 35/221 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ A+N++N +T GF K+D+ Q S A G+ S+ Sbjct: 19 LALRANNLANANTDGF--------------KSDMAQARSMQAFGEGLPSRVFAMVETPSA 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G +TG +LD A++GD WFA+++ G TR G G L + G PV+ Sbjct: 65 NFRAGPIKTTGRDLDVAIKGDGWFAVQAKDGSEAYTRSGSLSFDSTGLLHNDRGN-PVMG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMG-LYSVDMSQGFVRRENSGISP 179 A PI +P E + + G IS + + VI +G L V+ + R G+ Sbjct: 124 DAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVIEEVGRLKLVNPGNAQMMRGEDGLFR 182 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P V V+ G +E SN N + EM +I L ++F Sbjct: 183 LVSGDPAPADPNVFVESGAVEGSNVNPVDEMVSLIDLQRQF 223 >gi|91785632|ref|YP_560838.1| flagellar basal body rod protein FlgG [Burkholderia xenovorans LB400] gi|91689586|gb|ABE32786.1| flgG; flagellar basal-body rod protein [Burkholderia xenovorans LB400] Length = 262 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQNT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG Y V+ I IP +G G + S + + +M + Sbjct: 121 QTNAQGQLVTSSG-YQVIP----AITIPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQI 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G F +SG +PN+ L T+ +G++E SN N + E+ Sbjct: 176 ATFINPAGLDAKGENLFAETASSG-APNVAQPGLNGAG--TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|254511352|ref|ZP_05123419.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium KLH11] gi|221535063|gb|EEE38051.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium KLH11] Length = 439 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 16/130 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+AA A RL+T++DN++N+ T G++ ++ F +V + Q S+ A Sbjct: 11 ISSSLNAGVAALKANANRLATISDNIANSSTFGYKRVETDFHSMVTS-----GQGGSYSA 65 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI-------ILTRDGRFKVT 109 G S+ + GS ++T D A+ G + I +LT G F+ Sbjct: 66 GGVRTTSQRLIDQRGSLVTTNNSTDLAVRGRGMLPVRPSSQIAAGSNEMMLTTTGSFRTN 125 Query: 110 DDGSLVSASG 119 ++G LV+ SG Sbjct: 126 EEGYLVTQSG 135 >gi|187925759|ref|YP_001897401.1| flagellar basal body rod protein FlgG [Burkholderia phytofirmans PsJN] gi|187716953|gb|ACD18177.1| flagellar basal-body rod protein FlgG [Burkholderia phytofirmans PsJN] Length = 262 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG Y V+ I IP +G G + S + + +M + Sbjct: 121 QTNAQGQLVTSSG-YQVIP----AITIPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQI 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G F +SG +PN+ L T+ +G++E SN N + E+ Sbjct: 176 ATFINPAGLDAKGENLFAETASSG-APNVAQPGLNGAG--TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|46578928|ref|YP_009736.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris str. Hildenborough] gi|120603471|ref|YP_967871.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris DP4] gi|46448340|gb|AAS94995.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris str. Hildenborough] gi|120563700|gb|ABM29444.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris DP4] gi|311232786|gb|ADP85640.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris RCH1] Length = 260 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 38/242 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQ 54 M S +A + + ++ N++N +T GF+ + +F ++ + + D Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISHNLANVNTSGFKKSRAEFEDLMYQNMRIAGSATEGDS 60 Query: 55 KISF---VASG------KEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTR 102 +I V G ++ S+ G F ++G LD A+EGD +F + PR TR Sbjct: 61 RIPVGIQVGMGVRPTAVHKFFSQ--GDFQNSGNPLDIAIEGDGFFQVLVNGEPR---YTR 115 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT--MGL 160 G FK+ DG++V+A+G Y + +VP + + + G + G+ +A + L Sbjct: 116 AGAFKLNQDGTVVTANG-YVLQPEFTVPAET-KNVVVTEAGHIAALDANGQELAAADIPL 173 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 Y+ G +V E SG + + P ED G T+ +GFLE SN + EM Sbjct: 174 YTFINPAGLDAIGRNLYVPSEASGEA--VEGVPGEDNVG-TLAQGFLEMSNVEVVDEMVN 230 Query: 213 MI 214 MI Sbjct: 231 MI 232 >gi|113884291|gb|ABI38343.1| flagellar basal-body rod protein FlgF [Shewanella sp. MR-4] gi|113888281|gb|ABI42332.1| flagellar basal-body rod protein FlgF [Shewanella sp. MR-7] Length = 252 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 35/221 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ A+N++N +T GF K+D+ Q S A G+ S+ Sbjct: 24 LALRANNLANANTDGF--------------KSDMAQARSMQAFGEGLPSRVFAMVETPSA 69 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G +TG +LD A++GD WFA+++ G TR G G L + G PV+ Sbjct: 70 NFRAGPIKTTGRDLDVAIKGDGWFAVQAKDGSEAYTRSGSLSFDSTGLLHNDRGN-PVMG 128 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMG-LYSVDMSQGFVRRENSGISP 179 A PI +P E + + G IS + + VI +G L V+ + R G+ Sbjct: 129 DAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVIEEVGRLKLVNPGNAQMMRGEDGLFR 187 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P V V+ G +E SN N + EM +I L ++F Sbjct: 188 LVSGDPAPADPNVFVESGAVEGSNVNPVDEMVSLIDLQRQF 228 >gi|295097202|emb|CBK86292.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 245 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 7/136 (5%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 R + ++NM+N+ T GFR F V ++ + + VA Y +G TG Sbjct: 18 RQAVTSNNMANSATAGFRAQLAAFRAV--PVEGQTLKTRALVAESTPYNDDTMGPITHTG 75 Query: 78 TELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 LD AL + W A+ P G TR+G ++ DG+L GK + D A P+ +P Sbjct: 76 RSLDVALPQNGWLAVALPDGSEGYTRNGGIEIDRDGAL-QVGGKPLMGDGA--PLVVPPH 132 Query: 137 DEIFNVGEKGEISQKG 152 +I + E G +S G Sbjct: 133 SQI-TIAEDGTVSALG 147 >gi|86151576|ref|ZP_01069790.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 260.94] gi|157414984|ref|YP_001482240.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|85841205|gb|EAQ58453.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 260.94] gi|157385948|gb|ABV52263.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747621|gb|ADN90891.1| Flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni M1] gi|315931896|gb|EFV10851.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 327] Length = 270 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLENSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|88596898|ref|ZP_01100134.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218562336|ref|YP_002344115.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|88190587|gb|EAQ94560.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112360042|emb|CAL34834.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925953|gb|ADC28305.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315926811|gb|EFV06185.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 270 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|283780136|ref|YP_003370891.1| flagellar basal body rod protein [Pirellula staleyi DSM 6068] gi|283438589|gb|ADB17031.1| flagellar basal body rod protein [Pirellula staleyi DSM 6068] Length = 250 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 105/253 (41%), Gaps = 38/253 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT----IKVKFSEVVGAIKNDIDQK- 55 M I A A Q++ + +N++N DT GF+ + + SE AI+ +Q Sbjct: 1 MYYGLYISAAGAYAQNQKVEMITNNLANVDTSGFKKELGIFEARQSE---AIERGYEQPG 57 Query: 56 ---ISFVASGKEYLSK----EVGSFISTGTELDFALEG-DAWFALESPRGIILTRDGRFK 107 +S + G E+ +G+ +T + DFAL D +F +E +LTR G F Sbjct: 58 TRGVSDIGGGVEFKETVTDFSLGTLRATSSRTDFALPATDQFFEIERDGEALLTRSGNFH 117 Query: 108 V-------TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 T DG V A+G P+ S+P + V G ISQ G + Sbjct: 118 FSVDGVLRTQDGDAVLAAGGTPLTLDPSLP---------WRVLPGGLISQGGDTVP---- 164 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMYEMGQMIHLTQ 218 S+ F E G++ L D+ V+ G LE S N M EM +MI ++ Sbjct: 165 LSIKQVSNFRSLEKVGLNAFRANGELTDVPAELRDVRSGSLELSTVNPMQEMVEMIASSR 224 Query: 219 KFNSITTLIDENE 231 + + +I ++ Sbjct: 225 AYENNIKMIQHHD 237 >gi|118475132|ref|YP_891713.1| flagellar basal body rod protein FlgG [Campylobacter fetus subsp. fetus 82-40] gi|118414358|gb|ABK82778.1| flagellar basal-body rod protein FlgG [Campylobacter fetus subsp. fetus 82-40] Length = 262 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 30/227 (13%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEY 65 +A + ++ T + N++N +T+G++ + +F++++ G + + + G Sbjct: 13 VAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTTMSPTGMEVGLGV 72 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + G F TG LD + G+ +F ++ P G TR+G FK+ DG++V++ Sbjct: 73 RPTAITKVFGQGYFKETGNNLDMVIAGNGFFQIQLPDGTTAYTRNGAFKLDGDGNIVNSD 132 Query: 119 GKYPVLDMASVPIQIPQ----KDEIFNVGEKG--EISQKGKV-----IATMGLYSVDMSQ 167 G Y +L ++P Q D +V + G E++Q G++ I GL+++ Sbjct: 133 G-YRLLPEMNIPADATQISVGVDGTVSVLQPGNQEMTQIGQIELANFINPSGLHAMG-DN 190 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 F+ SG +PNI + +K+GF+E SN + EM +I Sbjct: 191 NFLETAASG-APNIGNGGTDGFG--QIKQGFVEMSNVQLVEEMTDLI 234 >gi|121997319|ref|YP_001002106.1| flagellar basal body FlaE domain-containing protein [Halorhodospira halophila SL1] gi|121588724|gb|ABM61304.1| flagellar basal body FlaE domain protein [Halorhodospira halophila SL1] Length = 418 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ----KISFV 59 SFNI L + + L T ++N++N T GF+ + +F+++ I Q + S + Sbjct: 2 SFNISLTGINSASKDLETTSNNLANAGTTGFKESRAEFNDLFAMGPMGIPQLAVGQGSRL 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 A+ + S+ GSF T LD +EG +F +E + TR G+F+V DG +V+ +G Sbjct: 62 ANVGQMFSQ--GSFDFTERSLDLGIEGRGFFRMEDDGEVSYTRAGQFEVDRDGYIVNNTG 119 Query: 120 K 120 K Sbjct: 120 K 120 >gi|262173356|ref|ZP_06041033.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|261890714|gb|EEY36701.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] Length = 250 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 38/236 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKISFVASGK 63 A + +++ +++N++N +T GF+ +V F ++ I+ N++ + + + Sbjct: 3 AQDTKMTAISNNLANVNTAGFKRDRVVFEDLFYNIQRQPGAQVDQVNELPTGVQLGSGVR 62 Query: 64 EYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 +++V G+ +T ELD A+ G +F +E+ G I+ TR+G+F V +G +V++ G Sbjct: 63 VVGTQKVFTQGNAQNTAQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQG 122 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IATMGLYSVD 164 P+ IQIP ++G G +S Q G++ I GL +V Sbjct: 123 -LPL----EPQIQIPDNVVSLSIGVDGTVSATTAGDPAPQQLGQITLAKFINPAGLEAVG 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + F + SG++ + +D +G ++K+G LE SN + EM MI + + Sbjct: 178 GNL-FRETDASGLAEEL--VAGQDGTG-SIKQGALEGSNVQVVEEMVDMITTQRAY 229 >gi|111115606|ref|YP_710224.1| flagellar basal body rod protein FlgG [Borrelia afzelii PKo] gi|110890880|gb|ABH02048.1| flagellar basal-body rod protein [Borrelia afzelii PKo] Length = 265 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 118/265 (44%), Gaps = 44/265 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T GF+ I+ +F +++ A +N + + Sbjct: 11 GMTAQ---QYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENTLRPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G ST D A+EGD ++ + P G TRDG FK+ + Sbjct: 68 VGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSFKIDSNRE 127 Query: 114 LVSASGKYPVL-----------------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 LV++ G Y VL + V ++I +E +G+ EIS + + Sbjct: 128 LVTSQG-YKVLPNIFFPEEYIRNSITISEQGIVSVKIDNSNEPIELGQI-EIS---RFVN 182 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 GL ++ + + +E +G I P G +++G LE SN + EM MI + Sbjct: 183 PAGLSAIGSN---LFKETAGSGQEIAGIPGSKGMG-KLRQGILEMSNVSIAEEMVTMI-V 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + +ML N+ Sbjct: 238 AQRAYEINSKAIQTSDNMLGIANNL 262 >gi|146307868|ref|YP_001188333.1| flagellar basal body rod protein FlgF [Pseudomonas mendocina ymp] gi|145576069|gb|ABP85601.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp] Length = 246 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 52/229 (22%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L A+N++N T GFR D +Q S G+ Y ++ Sbjct: 19 LRAHANNLANVSTSGFR--------------RDFEQARSMPLFGESYPARVFAMSERPGT 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 GS TG +LD A+ G W A+++P G R + G L + +G PV+ Sbjct: 65 DFRAGSLQETGRDLDVAIGGKGWIAVQAPDGSEAYVRTASLNIDALGVLRTGNG-LPVMG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM--------------SQGFVR 171 A PI +P + ++ +G+ G IS + L VD + G +R Sbjct: 124 NAG-PIAVPPEQKV-EIGQDGTISIRALGENPNVLAEVDRIKLVNPDPKSLEKGTDGLIR 181 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P + E + V V GFLE SN N++ EM ++ L+++F Sbjct: 182 VKG---QPEV-----EADATVQVTSGFLEASNVNAVEEMTAILSLSRQF 222 >gi|148926662|ref|ZP_01810343.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845181|gb|EDK22276.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 270 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDRIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNADIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|299531286|ref|ZP_07044696.1| flagellar hook protein FlgE [Comamonas testosteroni S44] gi|298720693|gb|EFI61640.1| flagellar hook protein FlgE [Comamonas testosteroni S44] Length = 422 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + N++N++T GF+ + F+E+V + + S + Sbjct: 3 FQQGLSGLNAASKNLDVIGHNIANSNTTGFKASRADFAEMVASAIGSASGQSSGIGVNVA 62 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 +S++ GS STG LD A+ G+ +F ++ G I TR G F + +G+L Sbjct: 63 SVSQQFRQGSITSTGNNLDIAINGNGFFVVKQSDGSIAYTRAGNFGLDKEGNL 115 >gi|217031579|ref|ZP_03437084.1| hypothetical protein HPB128_21g137 [Helicobacter pylori B128] gi|298736702|ref|YP_003729232.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] gi|216946779|gb|EEC25375.1| hypothetical protein HPB128_21g137 [Helicobacter pylori B128] gi|298355896|emb|CBI66768.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] Length = 269 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYATTGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPVLSEIYTDRSLGAFEGTHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M + I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAEIEVNQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + V+ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQVSDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|203284668|ref|YP_002222408.1| flagellar basal-body rod protein [Borrelia duttonii Ly] gi|201084111|gb|ACH93702.1| flagellar basal-body rod protein [Borrelia duttonii Ly] Length = 265 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 43/238 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + + T+A+N+SN +T+GF+ I+ +F +++ A +N + + Sbjct: 11 GMKAQ---QYNVDTIANNLSNVNTIGFKKIRAEFEDLIYQTQRRAGTPATENTVTPLGNQ 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G + + E G+ T D A+EGD ++ + G TRDG FK+ +G+ Sbjct: 68 VGHGTKVSATHRLFEQGNLQVTNLNTDVAIEGDGFYKVLLSDGTYGYTRDGSFKIDANGN 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--KVIATMGLYSVDMSQGFVR 171 LV+ G Y +L S P + K+ I ISQ+G V GL +++ Q + Sbjct: 128 LVTNQG-YILLPEISFPEEYI-KNSI-------AISQEGIISVKVNEGLEPIELGQIEIA 178 Query: 172 R-----ENSGISPNIPPTPL---EDLSGV-------TVKRGFLEDSNANSMYEMGQMI 214 R + I NI + E++SG+ +K+G LE SN EM MI Sbjct: 179 RFVNPAGLNAIGNNIFKETIGSGEEISGIPGSNGMGKLKQGMLEMSNVAIAEEMVTMI 236 >gi|325295417|ref|YP_004281931.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065865|gb|ADY73872.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 568 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKND--IDQ 54 M SF A + LS ++DN++N +TVGF+ F +++ KN ++Q Sbjct: 1 MLQSFYTAFTGLNADKTWLSVISDNIANVNTVGFKKENAVFEDLLARSLTTFKNGAPVNQ 60 Query: 55 KI---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 +I +F+++ + S+ G+F++T LD AL+G+ +F ++ G+ TR+G F++ Sbjct: 61 EIGGGTFISTTVKDFSQ--GTFMNTNNPLDLALDGEGFFMVKDETGVTYYTRNGEFRLDA 118 Query: 111 DGSLVSASG 119 +G L++ G Sbjct: 119 NGDLINMLG 127 >gi|291276427|ref|YP_003516199.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] gi|290963621|emb|CBG39453.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] Length = 262 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/263 (21%), Positives = 114/263 (43%), Gaps = 49/263 (18%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 L + ++ T ++N++N +TVG++ + +F+++ G ++ + + G Sbjct: 13 LGQQLQIDTTSNNIANVNTVGYKRQRAEFNDLFYQNLQYAGTATSETTLSPTGIEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + S G+ LD A+ G +F + P G TR G FK+ D+G++V++ Sbjct: 73 RPGAIAKMFSQGSPKETENNLDMAITGKGFFQVRLPDGTTAYTRSGNFKLDDNGNVVTSE 132 Query: 119 GKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYS 162 G A +P I +PQ N+G G +S + I GL+S Sbjct: 133 G------YALIPQITVPQDATQINIGNDGTVSVVQGNNGGSNTIGQIELADFINPAGLHS 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQ 218 + +N ++ + P+ ++G +K+GFLE SN + EM +I + Sbjct: 187 LG--------DNLYLNTSASGAPITGVAGTNGMGQIKQGFLELSNVRLVEEMTDLITGQR 238 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + + I + +ML+ + + Sbjct: 239 AYEANSKSI-QTADAMLQTVNGL 260 >gi|78485810|ref|YP_391735.1| hypothetical protein Tcr_1469 [Thiomicrospira crunogena XCL-2] gi|78364096|gb|ABB42061.1| Flagellar basal-body rod protein FlgG [Thiomicrospira crunogena XCL-2] Length = 263 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 43/244 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 GL AQ + RL+T+++N++N +T ++T + +F++++ A +N+ + S Sbjct: 11 GLEAQ---DFRLATISNNLANANTYAYKTGRAEFNDLMYQNVRQPGAQATQNEENTFPSG 67 Query: 59 VASGKEYLSKEV------GSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDD 111 + G + V G+ + T +LD +EG +F AL+ I+ TRDG F+V + Sbjct: 68 LQLGTGVKAIGVQKIHTQGNAMVTDNQLDVMIEGKGFFQALDQDGNIMYTRDGSFEVNQN 127 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---------------GKVIA 156 G LV++SG Y V ++P+ E+F + G +S K I Sbjct: 128 GDLVTSSG-YLVEPNINIPLNT---TEVF-ISSDGVVSAKEPGNPQPIAVGQLELATFIN 182 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 GL + + F + +PN+ +E+ ++ +G LE SN N++ E+ MI Sbjct: 183 PAGLEAT--GKNFYIETLASGAPNVKNPEIEEAG--SLLQGALESSNVNTVEELIGMIEA 238 Query: 217 TQKF 220 + + Sbjct: 239 QRTY 242 >gi|167623363|ref|YP_001673657.1| flagellar basal body rod protein FlgG [Shewanella halifaxensis HAW-EB4] gi|167353385|gb|ABZ75998.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] Length = 262 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 32/233 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + +S +++N++N TVGF+ + F ++ + A + +S Sbjct: 11 GLDAQ---QTDISVISNNVANASTVGFKKSRAVFEDLLYQNVSQAGGISASNTKLPNGLS 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 A K ++E+ G+ ++T LD +EG +F ++ P G TR+G+F + + G Sbjct: 68 IGAGTKVVATQEMFTQGNMLTTDNSLDLMVEGPGFFEVQLPDGTAAYTRNGQFSLDETGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQ 167 +V+ Y V+ A I IP+ V +GE+S K +V+ + + Sbjct: 128 IVTPGSGY-VIQPA---ITIPEGATSITVSAEGEVSVKTPGNAENQVVGQLAIADFINPS 183 Query: 168 GF-VRRENSGISPNIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G +N + TP++ L G+ +++G LE SN N E+ +I Sbjct: 184 GLDPMGQNLYLETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|304392493|ref|ZP_07374433.1| flagellar hook protein FlgE [Ahrensia sp. R2A130] gi|303295123|gb|EFL89483.1| flagellar hook protein FlgE [Ahrensia sp. R2A130] Length = 423 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 12/126 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKI-- 56 M+TS + G+ AQ RLSTVADN++N DT G++ +F+++V GA + +D + Sbjct: 7 MRTSVS-GMQAQ---SNRLSTVADNVANVDTTGYKKYSTEFAQLVRPGA-SSGVDSSLGS 61 Query: 57 -SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 + ++++S++ G+ T + D A+ G+ +F +E G LTR G F G L Sbjct: 62 GGVLTDARQHISQQ-GNVSYTQSSTDIAINGNGFFVVEDSGGSNSLTRAGSFVADASGFL 120 Query: 115 VSASGK 120 V+A G+ Sbjct: 121 VNAGGQ 126 >gi|323498418|ref|ZP_08103414.1| flagellar basal body rod protein FlgG [Vibrio sinaloensis DSM 21326] gi|323316491|gb|EGA69506.1| flagellar basal body rod protein FlgG [Vibrio sinaloensis DSM 21326] Length = 262 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N TVG++ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNTELPTGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I +R+G+F V D+G+ Sbjct: 68 LGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTVNDEGA 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V++ Y + I IP+ VG GE+S Sbjct: 128 IVTSGAGYGL----EPEIVIPEDAISITVGTDGEVS 159 >gi|78776232|ref|YP_392547.1| hypothetical protein Suden_0031 [Sulfurimonas denitrificans DSM 1251] gi|78496772|gb|ABB43312.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 430 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKIS 57 M +F G+ + + + +ADN++NT T+GFR +FS + + DI+ I Sbjct: 2 MIQAFYTGINGIKSHQTSIDVIADNLANTSTLGFRGYTAEFSSLFEKSLSTTADINAGIG 61 Query: 58 FVASGKEY-LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + ++ VG+ + D A+ GD WF ++ + TRDG F + LV+ Sbjct: 62 LGSRVNAITMNDSVGTLQLSERSTDMAIMGDGWFGIQGEGSPLYTRDGSFTFDRERDLVT 121 Query: 117 ASGKY 121 A G Y Sbjct: 122 ADGYY 126 >gi|332981440|ref|YP_004462881.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] gi|332699118|gb|AEE96059.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] Length = 265 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDID- 53 M S G++ A + R+ + +N++N +TVGF++ +V F +V G+ N + Sbjct: 1 MMRSMFSGVSGLRAHQTRMDVIGNNIANVNTVGFKSSRVTFQDVFNQTIKTGSAPNVLGG 60 Query: 54 ---QKISFVAS-GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 Q+I A+ G + G T LD A+ GD +F + TR G F + Sbjct: 61 TNPQQIGLGAAVGAIDVLHTPGGIERTDNPLDLAINGDGFFVVNDGTADYYTRAGNFHLD 120 Query: 110 DDGSLVSASGKY 121 DG+LV+ G Y Sbjct: 121 ADGNLVTPDGMY 132 >gi|319790416|ref|YP_004152049.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] gi|317114918|gb|ADU97408.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] Length = 522 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKND--IDQ 54 M SF A ++ LS ++DN++N +TVGF+ + F +++ KN ++ Sbjct: 1 MLQSFYTAFTGLTADKRWLSIISDNIANVNTVGFKAERAVFEDLLARSLTTFKNGAPVNT 60 Query: 55 KIS---FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 +I FV++ + S+ G+F++T LD AL+G+ +F + +G+ TR+G F++ Sbjct: 61 EIGGGVFVSATVKDFSQ--GTFMNTNNPLDLALDGEGFFMVRDNQGLTYYTRNGEFRLDA 118 Query: 111 DGSLVSASG 119 +G L++ G Sbjct: 119 NGDLINMLG 127 >gi|160896079|ref|YP_001561661.1| flagellar basal body FlaE domain-containing protein [Delftia acidovorans SPH-1] gi|160361663|gb|ABX33276.1| flagellar basal body FlaE domain protein [Delftia acidovorans SPH-1] Length = 423 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 36/201 (17%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + N++N +T GF++ + +F+E V + + S + Sbjct: 3 FQQGLSGLNAASKNLDVIGHNIANANTTGFKSSRAEFAEAVASAVGSASGQNSGIGVNVA 62 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK- 120 ++++ G +TG LD A+ G+ +F + P G TR G F + G+L + G Sbjct: 63 AVTQQFRQGPITTTGNNLDVAINGNGFFVVRQPDGSTAYTRAGNFGLDKQGNLKTVQGDN 122 Query: 121 ---YPV--------LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 YPV VP+ P G+ IA +D+S Sbjct: 123 VMGYPVDATTGKVLAGGQPVPMVFP----------------SGQPIAAKTTTKIDVSLNL 166 Query: 170 VRRE-----NSGISPNIPPTP 185 R NS +P +P TP Sbjct: 167 DARATPAAGNSTATPPVPATP 187 >gi|149927798|ref|ZP_01916049.1| flagellar hook protein E [Limnobacter sp. MED105] gi|149823420|gb|EDM82651.1| flagellar hook protein E [Limnobacter sp. MED105] Length = 437 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 14/143 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------KNDIDQKIS 57 SF GL+ A ++ L +A+N+SN VGF+ + +FS+V N I S Sbjct: 8 SFQQGLSGLNAAQRGLEVIANNVSNASVVGFKGSEAEFSDVFARAFNGARSTNGIGLGTS 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 A + + + G+ TG LD A+ G +F +++ G I TR+G+F + ++G +V+ Sbjct: 68 LAAVTQNF---KQGNINVTGNPLDLAISGTGFFKVQAGNGDNIYTRNGQFTLNNEGVIVN 124 Query: 117 ASGK----YPVLDMASVPIQIPQ 135 + G +PV P + Q Sbjct: 125 SRGDKLQGFPVDAATGRPSDVAQ 147 >gi|28900124|ref|NP_799779.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|260365774|ref|ZP_05778270.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|260880696|ref|ZP_05893051.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|260897698|ref|ZP_05906194.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|260899391|ref|ZP_05907786.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|28808407|dbj|BAC61612.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086222|gb|EFO35917.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|308092230|gb|EFO41925.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|308109302|gb|EFO46842.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|308115005|gb|EFO52545.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|328470103|gb|EGF41014.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus 10329] Length = 261 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ N++ + Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNELPSGVQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V G+ +T +LD A+ G +F +E+ G I+ TR+G+F + +G Sbjct: 68 LGSGVRVVGTQKVFTQGNTQNTTQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVG----------------EKGEISQKGKVIAT 157 +V++ G P+ IQIP F+VG + G+I+ K I Sbjct: 128 MVNSQG-LPL----EPQIQIPDNATSFSVGVDGTVTTTTADDPTPQQLGQIT-LAKFINP 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL +V G + RE P D +G ++K+G LE SN + EM MI Sbjct: 182 AGLEAVG---GNLFRETEASGPADELIAGADGAG-SIKQGALEGSNVQVVEEMVDMITTQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|261407975|ref|YP_003244216.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261284438|gb|ACX66409.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 274 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 48/278 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++ + Q +S V Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDI-------LSQTMSGVT 53 Query: 61 SGKEYLS-----KEVGSFISTGT---------------ELDFALEGDAWFAL---ESPRG 97 G + S K++G +S G+ D ++GD +F + E Sbjct: 54 PGTDDPSGGVNAKQIGLGVSIGSIDTLHTPGSAMMTNNPRDLRIDGDGFFMVKLSEDQEV 113 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----G 152 LTR G F + +LV++ G VLD A PIQ+ ++ F + + G I QK Sbjct: 114 PFLTRAGDFHIDVARNLVTSDGML-VLDSAGDPIQLDEEVTSFTIAQNGAIIQKMSDGTT 172 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV------------TVKRGFLE 200 + A +G+ + +G + + + P DL+ V + G LE Sbjct: 173 EEGAIIGVAKIPNPEGLEKIGGNMYRVTLNAVPDGDLAAVMFEGNNAEEGTGAIIAGQLE 232 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 SN + E +MI + F + + +I +++ + E + Sbjct: 233 MSNVDLTGEFSEMIVAQRGFQANSRIITTSDEVLQEVV 270 >gi|159045792|ref|YP_001534586.1| flagellar basal body rod protein FlgG [Dinoroseobacter shibae DFL 12] gi|157913552|gb|ABV94985.1| flagellar basal-body rod protein FlgG [Dinoroseobacter shibae DFL 12] Length = 261 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 38/241 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIK-NDIDQKISFV 59 G++AQ + R+ +++N++N +T G+ + +F+++ G I +D + V Sbjct: 10 GMSAQ---QMRVEVISNNLANMNTTGYNARRAEFADLHYQQVKAPGTINASDGTALPTGV 66 Query: 60 ASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G + V GS TG +LD A+EG + + P G TRDG K + +G Sbjct: 67 QLGLGVRAAAVTVELSQGSLSQTGGDLDLAIEGKGYLEVTLPSGASAYTRDGSLKRSAEG 126 Query: 113 SLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDM 165 +V++ G YPV VP I IP+ +V +GE+ + + +++ L Sbjct: 127 LIVTSDG-YPV-----VPEIVIPEGTMRISVDAEGEVYAYFRDTVEPELLGQFSLAGFTN 180 Query: 166 SQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 ++G + E++ P + P ED G T ++G+LE S+ +++ E+ ++I + Sbjct: 181 AKGLEAIGSNLFMESNASGPPLIGVPGEDGLG-TFRQGYLEASSVDAVREVTELIEAQRG 239 Query: 220 F 220 + Sbjct: 240 Y 240 >gi|90408060|ref|ZP_01216231.1| flagellar hook protein [Psychromonas sp. CNPT3] gi|90310817|gb|EAS38931.1| flagellar hook protein [Psychromonas sp. CNPT3] Length = 473 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 26/154 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQKISF 58 SFNI L+ A + L + A+N++N +TVGF+ + +F V K + +S Sbjct: 2 SFNIALSGISAAQTDLDSTANNIANVNTVGFKESRAEFESVYANSLFTNSKTKVGDGVST 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFA----LESPRGIILTRDGRFKVTDDGSL 114 A +++ GS T LD A+ G +FA LE R + TR G FK+ + + Sbjct: 62 AAVAQQF---HQGSLKFTQNPLDLAITGSGFFATAGNLED-RDLSYTRSGTFKLNSENFV 117 Query: 115 VSASGKY----PVLD---------MASVPIQIPQ 135 V SG Y PV + + PIQIP+ Sbjct: 118 VDNSGNYLQAFPVNEDGTSSSVSLSTTQPIQIPE 151 >gi|212640499|ref|YP_002317019.1| flagellar basal body rod protein [Anoxybacillus flavithermus WK1] gi|212561979|gb|ACJ35034.1| Flagellar basal body rod protein [Anoxybacillus flavithermus WK1] Length = 262 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 117/256 (45%), Gaps = 37/256 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-------KISF------- 58 L+ ++R+ + +N++N +T G++ + + + I Q K+++ Sbjct: 13 LSQQRRIEMMTNNIANANTPGYKADQASLRAFPEMLMHRIQQTTIPTEKKLTWRDRTYIG 72 Query: 59 -VASGKEYLSKEVGSFIS-----TGTELDFAL---EGDAWFALESPRG-IILTRDGRFKV 108 +++G Y+ + V +F TG D A+ G ++F +++ G + TR+G F + Sbjct: 73 PLSTGV-YVQELVPNFAQGDIRETGNNTDMAIVDGTGTSFFTVQNETGEVRYTRNGHFTI 131 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 DG L + G Y VLD IQ+ DE F V E G I++ G IA + + + Q Sbjct: 132 DADGFLTTTDGLY-VLDETGNRIQV--GDEQFTVLEDGTITKNGGQIARLRIAYAENVQT 188 Query: 169 FVRRENSGI---SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + +E +G+ +PP T+++ +E SN + M M+ + F + Sbjct: 189 LM-KEGNGLFRAEQQLPPAET-----YTIRQQHIERSNVDLSRTMTDMLSAYRAFEANQK 242 Query: 226 LIDENEKSMLEAIRNI 241 ++ +KSM +A I Sbjct: 243 ILQAYDKSMDKAANEI 258 >gi|91794995|ref|YP_564646.1| flagellar hook protein FlgE [Shewanella denitrificans OS217] gi|91716997|gb|ABE56923.1| flagellar basal body FlaE [Shewanella denitrificans OS217] Length = 402 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ + Q L+T+++N++N+ TVGFR + +F+ AI N V S Sbjct: 2 SFNIALSGLQSTTQDLNTISNNIANSSTVGFRGGRSEFA----AIYNGGQAGGVSVMSTT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 + +K GS TG +LD ++GD +F L+ G + R G F G +V G Sbjct: 58 QNFTKG-GSLTYTGRQLDMGIQGDGFFVLKGTDGANMYARAGMFHQDSQGFVVDPVGN 114 >gi|153837069|ref|ZP_01989736.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|149749657|gb|EDM60402.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] Length = 261 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 43/237 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ N++ + Sbjct: 11 GMAAQ---DTKMTVISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNELPSGVQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V G+ +T +LD A+ G +F +E+ G I+ TR+G+F + +G Sbjct: 68 LGSGVRVVGTQKVFTQGNTQNTTQDLDLAVMGQGFFQIENSDGQIMYTRNGQFHINSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVG----------------EKGEISQKGKVIAT 157 +V++ G P+ IQIP F+VG + G+I+ K I Sbjct: 128 MVNSQG-LPL----EPQIQIPDNATSFSVGVDGTVTTTTADDPTPQQLGQIT-LAKFINP 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 GL +V G + RE P D +G ++K+G LE SN + EM MI Sbjct: 182 AGLEAVG---GNLFRETEASGPADELIAGADGAG-SIKQGALEGSNVQVVEEMVDMI 234 >gi|104782841|ref|YP_609339.1| flagellar basal body rod protein FlgF [Pseudomonas entomophila L48] gi|95111828|emb|CAK16552.1| flagellar basal-body rod protein FlgF [Pseudomonas entomophila L48] Length = 246 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 42/232 (18%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A+Q AL Q+ A+N++N T GF+ + + V G D +F S + Sbjct: 12 ASQNALAQKAH--ANNLANVSTNGFQRDLEQARSMPVFG----DSFPARAFAMSERPATD 65 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G + TG ELD A+ GD + A+++P G R G + G L + +G M Sbjct: 66 FRAGPLVETGRELDVAVSGDGFMAVQAPDGSEAYVRTGSLNIDALGVLRAGNG------M 119 Query: 127 ASV----PIQIPQKDEIFNVGEKGEISQKG-----KVIA---TMGLYSVDMSQ------G 168 A + PI IP + ++ VG+ G IS + +V+A + L + D+ G Sbjct: 120 AVMGNGGPIAIPPQQKV-EVGDDGTISIRAMGEDPRVMAEVDRIKLVNPDIKNMTKGPDG 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + +N P + V V GFLE SN N++ EM ++ L+++F Sbjct: 179 LIHTKNG--------QPADADVNVRVVSGFLEGSNVNAVEEMTSVLALSRQF 222 >gi|315929130|gb|EFV08357.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 305] Length = 270 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 34/251 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQK 219 +M+ + QK Sbjct: 239 EANRMVEMYQK 249 >gi|86157778|ref|YP_464563.1| flagellar basal body rod protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774289|gb|ABC81126.1| flagellar basal body rod protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 13/224 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + +A ++L VADN++N T GF+ + F + + + VA Sbjct: 1 MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFESFLAPGAAQDKRYAAAVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 SG + G TG LD E + A+ + G TRDGR + D LVS G Sbjct: 61 SGVDL---RPGPTQRTGNALDVVPEAGLFLAVRTAGGATAYTRDGRLTLDADRRLVS-DG 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN-SGIS 178 + P+L PI +P D V G + +AT+GL +D G V R S ++ Sbjct: 117 R-PLLSAQGEPIVLP-PDLDARVDAAGRVWAGDVEVATLGLARLD---GPVDRVGPSLLA 171 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 P L S V+ G LE NA ++ Q++ + + + Sbjct: 172 PGAGGRALP--SEGAVRSGELELGNAGALEASIQLVAAQRAYEA 213 >gi|225849153|ref|YP_002729317.1| flagellar hook protein FlgE [Sulfurihydrogenibium azorense Az-Fu1] gi|225643172|gb|ACN98222.1| flagellar hook protein FlgE [Sulfurihydrogenibium azorense Az-Fu1] Length = 409 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 71/129 (55%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKI 56 M SF ++ ++ + ++DN++N +T+GF++ +V F ++V N+ + + Sbjct: 1 MLQSFYTAVSGLNGNQKWIDVISDNIANVNTIGFKSERVTFEDLVAKSLTTFANNTPKNM 60 Query: 57 -----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 SF+A + S+ GSF +T LD AL+G+ +F ++ +G + TR G+F++ Sbjct: 61 EIGGGSFIALTTKDFSQ--GSFQNTVNPLDLALDGEGFFMVKDNQGTVYYTRAGQFRLDA 118 Query: 111 DGSLVSASG 119 +G +V+ G Sbjct: 119 NGDIVNVDG 127 >gi|309779447|ref|ZP_07674208.1| flagellar hook protein FlgE [Ralstonia sp. 5_7_47FAA] gi|308921688|gb|EFP67324.1| flagellar hook protein FlgE [Ralstonia sp. 5_7_47FAA] Length = 404 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F GL+ A + L + N++N +TVG++ +F +V VGA N I Q +S Sbjct: 3 FQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVSVT 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + + G+ TG LD A+ G ++ + + + TR+G+F+ +G ++SA Sbjct: 63 KVSQAFTQ---GNVTITGNPLDIAINGSGFYRMVDQGSGQVSYTRNGQFQTDKNGYVISA 119 Query: 118 SGK 120 +G+ Sbjct: 120 TGQ 122 >gi|297538898|ref|YP_003674667.1| flagellar basal-body rod protein FlgG [Methylotenera sp. 301] gi|297258245|gb|ADI30090.1| flagellar basal-body rod protein FlgG [Methylotenera sp. 301] Length = 260 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 115/265 (43%), Gaps = 52/265 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + ++ +A+N++N T GF+ + F +++ GA + Q S + Sbjct: 11 GLDAQ---QTQMDVIANNLANVSTNGFKRSRAVFEDLLYQNIRQPGAQTSQQTQLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G ++ E G+ T D A++G +F + P G TRDG F+ G Sbjct: 68 LGTGVRPVATERIFSQGNLQQTSNNKDVAIQGAGFFQVLMPDGTTAYTRDGSFQTDSQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 LV++SG +PV I +P E F VG G +S Q I T Sbjct: 128 LVTSSG-FPV----QPAITVPANAESFTVGRDGTVSITTTGSTATTQIGTLQLATFINTA 182 Query: 159 GLYSVDMSQG-----FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 GL QG FV SG +P + P + +G+ + +G++E SN N + E+ M Sbjct: 183 GL------QGKGENLFVETTASG-NPTV-NNPGTNGAGL-LTQGYVETSNVNVVEELVNM 233 Query: 214 IHLTQKFNSITTLIDENEKSMLEAI 238 I TQ+ I + ML+ + Sbjct: 234 IQ-TQRAYEINSKAITTSDQMLQKL 257 >gi|119947177|ref|YP_944857.1| flagellar hook protein FlgE [Psychromonas ingrahamii 37] gi|119865781|gb|ABM05258.1| flagellar hook protein FlgE [Psychromonas ingrahamii 37] Length = 398 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI ++ A ++L+T+++N++N T GF+ + +F+ + Q SG Sbjct: 2 SFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIYNG-----GQAGGVEVSGI 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 GS +TG LD A+ G+ +FA +G I TR G F D +VS++G Sbjct: 57 TQNFDRNGSLEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGN 114 >gi|225377359|ref|ZP_03754580.1| hypothetical protein ROSEINA2194_03007 [Roseburia inulinivorans DSM 16841] gi|225210784|gb|EEG93138.1| hypothetical protein ROSEINA2194_03007 [Roseburia inulinivorans DSM 16841] Length = 196 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 14/195 (7%) Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRDGRFKVTDDGS 113 V G+ Y + + GS T E D AL G+ +FA+ + TRDG F V +G Sbjct: 3 VHLGETYTNYDQGSIKVTDNETDVALAGNGFFAIAFTNKAGETSVKYTRDGAFTVNTEGY 62 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFN------VGEKGEISQKGKVIATMGLYSVDMSQ 167 LV+ G Y VL+ A P N + E G I Q +++ +G+ D Sbjct: 63 LVTKDGDY-VLNQAGAQNTDPNARIRLNPNAKITIDELGNIYQNDQLVTRIGVVDFD-DY 120 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 ++ + + + + S V++G +E SN N + EM +MI +++ + + +I Sbjct: 121 NYISKYGENLYDLVDGGQIT-ASDAKVQQGCIEGSNVNVVDEMVKMITISRAYQAGQKVI 179 Query: 228 DENEKSMLEAIRNIA 242 + ++++ + + + Sbjct: 180 NTVDETLDKTVNQVG 194 >gi|160901817|ref|YP_001567398.1| flagellar basal-body rod protein FlgG [Petrotoga mobilis SJ95] gi|160359461|gb|ABX31075.1| flagellar basal-body rod protein FlgG [Petrotoga mobilis SJ95] Length = 261 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 115/259 (44%), Gaps = 44/259 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A +++L +++N++N DT G++ + +F ++ + + + + + A G + G + Sbjct: 14 AEQRKLDIISNNLANVDTTGYKKQRAEFQDL---LYSSVKEAGTPTAQGS---TLPTGLY 67 Query: 74 ISTGTEL-------------------DFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + GT L D A+ GD +F ++ G I TRDG FK+ +G Sbjct: 68 VGHGTRLAATTRIFTLGNIEPTDNSTDIAIMGDGFFQVQMQDGSIAYTRDGSFKLDANGR 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSVD-MSQG 168 L ++ G + +P I IPQ NV G +S G + L +V ++ G Sbjct: 128 LTTSDG------LMVIPNIVIPQNSVGINVSPDGIVSVSLGDGTIQNVGNLTTVRFLNPG 181 Query: 169 FVRRENSGISPNIPPT--PLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 ++ + + P + P E + G +++G+LE SN + + EM MI + Q+ Sbjct: 182 GLKPIGNNLYSETPASGNPTEGIPGQDGFGALQQGYLEKSNVDVVKEMVDMI-VAQRAYD 240 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + ML + N+ Sbjct: 241 INSKTITTADEMLRTVSNV 259 >gi|78485812|ref|YP_391737.1| hypothetical protein Tcr_1471 [Thiomicrospira crunogena XCL-2] gi|78364098|gb|ABB42063.1| Flagellar hook protein FlgE [Thiomicrospira crunogena XCL-2] Length = 538 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 6/110 (5%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A Q L +++N++N T+G+++ + +FS++ ++ + + +++ + G+ Sbjct: 15 AASQGLGVISNNLANAQTMGYKSSRAEFSDMFYGAQSTPGNGVRVDSITQDFTN---GTI 71 Query: 74 ISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSASGK 120 TG +LD A++GD +F LE G + TR+G FK+ DG + S G Sbjct: 72 TDTGRDLDMAIDGDGFFILEDRTGKYENVYTRNGSFKLDKDGYVTSQEGN 121 >gi|254437698|ref|ZP_05051192.1| flagellar basal-body rod protein FlgG [Octadecabacter antarcticus 307] gi|198253144|gb|EDY77458.1| flagellar basal-body rod protein FlgG [Octadecabacter antarcticus 307] Length = 257 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 123/262 (46%), Gaps = 42/262 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-KNDIDQK----------- 55 GL AQ + R+ +A+N+SN +TVGF++ +V F ++ + + DQ Sbjct: 7 GLNAQ---QTRMQVIANNLSNLNTVGFKSDRVNFESLLYQVSRAGGDQTSEGTALTSALA 63 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + V + K Y G ++T D A++G +F + P G + TR+G F + Sbjct: 64 LGTGVRAVNTQKLYTQ---GGMVNTDNSFDLAIDGQGFFQVLMPDGRVGYTRNGSFSRSA 120 Query: 111 DGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKG-EISQK-GKV-IATM---- 158 DG++ +ASG Y + +P + I Q D I +V G E++Q+ G++ +AT Sbjct: 121 DGTMTTASG-YVIQPEIRIPDEAVEVNISQ-DGIVSVRSSGQEVAQEVGQLSLATFANPR 178 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL + S FV + + + + L + +G LE SN N + ++ +MI TQ Sbjct: 179 GLQPIGES--FVVETTASGAATVAAPQSQGLG--KLMQGALEASNVNVVQQLVEMIE-TQ 233 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + +++ + M+ I N Sbjct: 234 RAYEVSSKAITSSDEMMRYISN 255 >gi|153001472|ref|YP_001367153.1| flagellar hook protein FlgE [Shewanella baltica OS185] gi|160876203|ref|YP_001555519.1| flagellar hook protein FlgE [Shewanella baltica OS195] gi|217972598|ref|YP_002357349.1| flagellar hook protein FlgE [Shewanella baltica OS223] gi|151366090|gb|ABS09090.1| flagellar basal body FlaE domain protein [Shewanella baltica OS185] gi|160861725|gb|ABX50259.1| flagellar basal body FlaE domain protein [Shewanella baltica OS195] gi|217497733|gb|ACK45926.1| flagellar basal body FlaE domain protein [Shewanella baltica OS223] gi|315268393|gb|ADT95246.1| fagellar hook-basal body protein [Shewanella baltica OS678] Length = 453 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 20/150 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTSNSLDMAIKGGGFFVTASEIGSLDHSFTRAGAFKVDSNNYMVDSA 121 Query: 119 GK----YPV----------LDMASVPIQIP 134 G +PV L A P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTAK-PVQIP 150 >gi|217972599|ref|YP_002357350.1| flagellar basal body rod protein FlgF [Shewanella baltica OS223] gi|217497734|gb|ACK45927.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS223] Length = 247 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 19/213 (8%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF++ + + + A + ++ F + + G +TG Sbjct: 19 LALRANNLANANTDGFKSDMAQ-ARSMQAFGEGLPSRV-FAMTESPSANFRSGPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++GD WFA+++ G TR G G L + G PV+ A PI +P Sbjct: 77 DLDVAIKGDGWFAVQAKDGSEAYTRAGSLSFDSTGLLHNDRGN-PVMGDAG-PIVLPLPI 134 Query: 138 EIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSG----ISPNIPPTPLE 187 E ++ + G IS + +V+ +G L V+ + R G +S NI P Sbjct: 135 EKVSISQDGIISVRPQGATAEVVEEVGRLKLVNPGNAEMMRGEDGLFRLVSGNIAPA--- 191 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D S V V+ G +E SN N + EM +I L ++F Sbjct: 192 DPS-VGVESGAVEGSNVNPVDEMVSLIDLQRQF 223 >gi|302387772|ref|YP_003823594.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] gi|302198400|gb|ADL05971.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] Length = 256 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 11/136 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFV 59 M+ SF IG L + +L V++N++N +TVGF+ FS++V A ++N + Sbjct: 1 MEQSFYIGALGALGQQTKLGIVSNNVANVNTVGFKAQYSVFSDLVHAEMRNTQGNNGAKS 60 Query: 60 ASGKEYLSKEVG----SFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVT---D 110 SG + + + TG E D+A+ G+ +F L+ P + +RDGRF+++ D Sbjct: 61 GSGTKVDQTKTDFSAMPYKETGLEHDYAIAGEGFFMLKDPVTGEVSYSRDGRFQLSRMED 120 Query: 111 DGSLVSASGKYPVLDM 126 LV++ K VL+M Sbjct: 121 KFYLVNSDNK-RVLNM 135 >gi|256003243|ref|ZP_05428235.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281418479|ref|ZP_06249498.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|255992934|gb|EEU03024.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281407563|gb|EFB37822.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316939268|gb|ADU73302.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 259 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 32/255 (12%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVVGAIKNDIDQKISFVASGK---E 64 + LA +++ V++N++N +T F+ I F +++ ++ D + + SG+ Sbjct: 11 SMLANSKQMDVVSNNLANVNTTAFKKDTLILESFPDML--VRRINDSRSASNPSGRLGNV 68 Query: 65 YLSKEVGSFIS---------TGTELDFALEG--DAWFALESPRGI-----ILTRDGRFKV 108 L +VG + T LD A+ A+F + P G TRDG F + Sbjct: 69 QLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNGEYTEYYTRDGSFAL 128 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS-VDMSQ 167 G LV+ G Y V+ V I E F+V + G I Q G+ +A + + + D + Sbjct: 129 NAYGQLVTKEG-YLVMGQNGV---ITLNSENFSVSDDGTIIQDGEAVARLLIRNFTDTTT 184 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 +R+ S + T + GV V++G+LE SN NS+ EM MI + + + + ++ Sbjct: 185 --LRKVGSNLVQRTENTQEQPFDGV-VRQGYLEQSNVNSINEMINMITIMRSYEANQKIL 241 Query: 228 DENEKSMLEAIRNIA 242 + ++ +A+ I Sbjct: 242 QAQDGTLEKAVNEIG 256 >gi|146277707|ref|YP_001167866.1| hypothetical protein Rsph17025_1668 [Rhodobacter sphaeroides ATCC 17025] gi|145555948|gb|ABP70561.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 251 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 23/173 (13%) Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 G S G TG +D A+ + WF ++ G L+R G ++T +G LV+ +G+ Sbjct: 63 GPHLFSSAPGLLNQTGEPMDVAIAEEGWFFVQPEGGEPALSRRGDLRLTAEGQLVNGAGE 122 Query: 121 YPVLDMASVPIQIPQK-----DEIFNV------GEKGEISQKGKVIATMGLYSVDMSQGF 169 +LD A PI++P DE+ + G GE +G VIAT+ + +G Sbjct: 123 A-MLDQAMQPIELPAVRSLVIDEVGRILYEPMDGAPGE-EVEGPVIATV------IPEGV 174 Query: 170 VRRENSG--ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 R+++ I P P D + +G LE SN N+M E+ I L + F Sbjct: 175 ALRKDADGQIRAGDEPLPAPD-QRARILQGVLEGSNVNTMEELVSSIELQRTF 226 >gi|222084885|ref|YP_002543414.1| flagellar hook protein [Agrobacterium radiobacter K84] gi|221722333|gb|ACM25489.1| flagellar hook protein [Agrobacterium radiobacter K84] Length = 425 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 2/107 (1%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A RL+TV+DN++N+ T G++ FS +V + + V + Y + G+ Sbjct: 16 AQANRLATVSDNIANSSTTGYKQASTSFSSLV-LPSSSGNYNSGGVETTVRYAISQQGTV 74 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 +T + D A++G+ +F ++S G LTR G F G+LV+A+G Sbjct: 75 SATTSSTDLAIQGNGFFVVQSAAGQTFLTRSGDFSADASGNLVNAAG 121 >gi|261419427|ref|YP_003253109.1| flagellar basal body rod protein FlgG [Geobacillus sp. Y412MC61] gi|319766242|ref|YP_004131743.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261375884|gb|ACX78627.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317111108|gb|ADU93600.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 265 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/269 (23%), Positives = 114/269 (42%), Gaps = 39/269 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G+ A + +L + +N++N +T GF+ + F ++ + Q IS Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDL-------MSQTISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG--II 99 V G + + + GS +TG LD A+ GD +F + G + Sbjct: 54 GPNAGRGGTNPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFVVGDASGNNRM 113 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKV 154 TR G F + G +V+ G+Y +L + + +Q+P + ++G G++ S Sbjct: 114 YTRAGNFYLDSQGYIVNVDGQY-LLGVGNSRLQVPTDAKSLSIGADGKVTIVDASGTLST 172 Query: 155 IATMGLYSVDMSQGFVRRENS----GISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYE 209 I T+ L + G + N+ + P T +G T+ G LE SN + E Sbjct: 173 IGTIQLAKFANNDGLEKAGNNLFRETTNSGTPTTGAPGANGTGTIVSGALEMSNVDLAEE 232 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +MI + F + T +I +++ + E + Sbjct: 233 FTEMIVAQRGFQANTRIITTSDEILQELV 261 >gi|39995527|ref|NP_951478.1| flagellar hook protein FlgE [Geobacter sulfurreducens PCA] gi|39982290|gb|AAR33751.1| flagellar hook protein FlgE [Geobacter sulfurreducens PCA] gi|298504527|gb|ADI83250.1| flagellar hook protein FlgE [Geobacter sulfurreducens KN400] Length = 419 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 9/127 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A + +S + +N+SN +T+GF+ ++ FS+V+ + + Q + G + + Sbjct: 10 GISGLNANGEAMSVIGNNISNVNTIGFKQGRMLFSDVLSSTISGGSQ----IGRGVQIQT 65 Query: 68 KE----VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 E GSF ST + D A++GD++F +++ G TR G F D +LV+ G Y V Sbjct: 66 VENQFTQGSFESTESGTDLAIQGDSFFVVQNTSGRYYTRAGAFSFNKDKTLVNPEG-YQV 124 Query: 124 LDMASVP 130 + +P Sbjct: 125 MGYGIIP 131 >gi|86146153|ref|ZP_01064479.1| polar flagellar FlgG [Vibrio sp. MED222] gi|218708806|ref|YP_002416427.1| flagellar basal body rod protein FlgG [Vibrio splendidus LGP32] gi|85836100|gb|EAQ54232.1| polar flagellar FlgG [Vibrio sp. MED222] gi|218321825|emb|CAV17796.1| Flagellar basal-body rod protein flgG [Vibrio splendidus LGP32] Length = 262 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 32/252 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N T+GF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F +E P G +R+G+F + DG+ Sbjct: 68 LGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQFTLNGDGA 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQG 168 +V++ Y + I IP+ VG GE+S Q+ V+ + ++ G Sbjct: 128 IVTSGQGYAL----QPEIVIPEDAISVTVGNDGEVSVRLRGQQDNVVVGQITITDFVNPG 183 Query: 169 FVRR--ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + +N + P E + G+ V++ LE SN N E+ MI + + Sbjct: 184 GLEPIGQNLYLPTGASGDPQEGVPGLNGLGNVRQSMLEASNVNVTEELVNMIEAQRVYEM 243 Query: 223 ITTLIDENEKSM 234 + +I +K M Sbjct: 244 NSKVISAVDKMM 255 >gi|12057219|gb|AAF14371.2|AF133240_5 flagellar proximal rod protein FlgF [Rhodobacter sphaeroides] Length = 251 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 18/210 (8%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASGKEYLSKEVGSFISTGTELD 81 A N++N GFR + D +F G S G TG +D Sbjct: 23 AQNLANQTVPGFRRDLTNEGDARFLKAMDAASARAFQTERGPHLFSSAPGLLNQTGEPMD 82 Query: 82 FALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP------ 134 A+ + WF ++ G L+R G ++T DG L++ +G+ +LD A PI++P Sbjct: 83 VAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNGAGEA-MLDPAMQPIELPPVRALI 141 Query: 135 --QKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 + I + G Q+ G +IAT V + + R +G P PTP + Sbjct: 142 VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTVRKDPDGRIRAGGEPL--PTPDQR-- 197 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V +G LE SN N+M E+ I L + F Sbjct: 198 -ARVLQGVLEGSNVNTMEELVSSIELQRTF 226 >gi|77359723|ref|YP_339298.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] gi|76874634|emb|CAI85855.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] Length = 247 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 15/211 (7%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 L+ A+N++N +T GF K F++ + A + ++ F + + G T Sbjct: 19 LALKANNLANANTTGF---KADFAQARSMQAFGEGLPSRV-FSMEERPGSNMTSGGIQQT 74 Query: 77 GTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G ELD A+ +AW +++ G T+ G +T +G LV++ G+ + + PI +P Sbjct: 75 GRELDIAMSDNAWLSVQDASGNEAYTKVGTLNITAEGMLVTSGGRQVIGEGG--PIILPV 132 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVD------MSQGFVRRENSGISPNIPPTPLEDL 189 E + G I + + L VD + + + N G+ P +E Sbjct: 133 PIEKIEFSKDGAIQVRPQGAPANFLEEVDRLKVVEANNSTLEKGNDGLFRPKPNQTVETS 192 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + V V G LE SN N ++EM MI ++F Sbjct: 193 ANVQVISGALEMSNVNPVHEMVDMISHQRQF 223 >gi|258592561|emb|CBE68870.1| Flagellar basal body and hook proteins [NC10 bacterium 'Dutch sediment'] Length = 245 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 18/215 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDI-----DQKISFVAS 61 GL AQ+A ++ ++ N++NT T GF+ + V G +++ + + V Sbjct: 11 GLMAQMA---KMEALSQNLANTGTPGFKGDLMVIEGGARGPLQSALLIEGRPEGPQPVWI 67 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ G T LD A G +F +++P+G+ TR G F + +G L + G Sbjct: 68 GRRVTDFGRGLIRETQNPLDLANSGPGYFVVQTPQGVRYTRAGNFAIDAEGHLETPDGSR 127 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS--GISP 179 + +QIP F V G I +G+ + + + D S +R S + P Sbjct: 128 --VQGKKGAVQIPGGR--FIVDNSGRILVEGQEVDRLRIVDPD-STALIRGGGSLFTLKP 182 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + P P+ V +++GFLE SN +++ M Q++ Sbjct: 183 SAPEPPVAKT--VEIRQGFLEGSNVDAVTAMTQIM 215 >gi|300024606|ref|YP_003757217.1| flagellar basal-body rod protein FlgG [Hyphomicrobium denitrificans ATCC 51888] gi|299526427|gb|ADJ24896.1| flagellar basal-body rod protein FlgG [Hyphomicrobium denitrificans ATCC 51888] Length = 262 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/240 (22%), Positives = 113/240 (47%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G++AQ + + +A+N++N +T GF+ + +F++++ G + D D + + Sbjct: 10 GMSAQ---QTNVEVIANNVANINTTGFKRARAEFTDLLYQTDRAAGTLARDDD---TMIP 63 Query: 61 SGKE-----------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 G + +LS + G+ T +LD AL+G +F ++ I+ TR G F Sbjct: 64 EGNQIGLGVRTVAIRHLSMQ-GALAPTSNKLDLALDGRGYFQVQGENNEILYTRAGAFNK 122 Query: 109 TDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFN-VGEKGEISQKGKV-IATMGLY 161 +G LV+ G + ++ ++P +QI +++ +G G+ G++ IA Sbjct: 123 DANGQLVTLEGNVVIPNI-TIPSTATDVQINASGQVYAIIGATGQQQLLGQLSIANFANE 181 Query: 162 S-VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + +D G + REN + P D + +G+LE SN + + E+ ++I + + Sbjct: 182 TGLDALGGNLFRENQASGAAVIGNP-GDSGFAKIHQGYLESSNVDPVKEITELIAAQRAY 240 >gi|94500242|ref|ZP_01306775.1| flagellar basal-body rod protein FlgF [Oceanobacter sp. RED65] gi|94427541|gb|EAT12518.1| flagellar basal-body rod protein FlgF [Oceanobacter sp. RED65] Length = 249 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 52/241 (21%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------------ 70 A+N++N T GFR D +Q S G Y ++ Sbjct: 23 ANNLANVSTTGFR--------------RDFEQARSMPVFGDYYPTRAYAMEERPASDFNP 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G + TG +LD A++ WFA+ G TR G F+V G LV +G+ L A Sbjct: 69 GPLVETGNDLDLAIDNQGWFAVLDANGNEAYTRRGDFQVDGLGRLV--NGQNQQLIGAGG 126 Query: 130 PIQIPQKDEIFNVGEKGEISQKG-----KVIA---TMGLYSVDMSQ------GFVRRENS 175 PI +P +++ + G +S +G VIA + L + D++Q G R ++ Sbjct: 127 PIVLPPYEKV-QIAADGTVSIQGVGEEPAVIAGIEQIKLVNPDLTQMEKGEDGLFRLRDA 185 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 P P V V G++E SN ++++ + Q++ L +++ + + DEN + Sbjct: 186 EPGAIQPADPT-----VQVASGYVEGSNVSAVHSLTQIMSLHRQYEMQVKMMSTADENAQ 240 Query: 233 S 233 + Sbjct: 241 T 241 >gi|168186143|ref|ZP_02620778.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] gi|169295828|gb|EDS77961.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] Length = 257 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 107/229 (46%), Gaps = 24/229 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++A++ ++L+ +++NM+N TVG++ + V+F+++ ++ ++D+ V+ G + Sbjct: 11 GMSAEM---EKLNAISNNMANATTVGYKKVDVQFNDL---MQENLDRYGYPVSKGNPQFT 64 Query: 68 ------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G+ + T D A++G +F ++ +G TR G F + + G++ Sbjct: 65 GTGVRTTELERDNAQGNLLQTNKNTDIAIDGHGFFKVQDGKGRTFYTRGGSFNIDNSGTV 124 Query: 115 VSASG-KYPVLDMASVPIQIPQ---KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 V G K +L+ I P + F + E+G +S A + +Y+ Sbjct: 125 VDKDGNKLVILNERGENINNPGAGFRTTSFKINEEGYVSGGPNTNARIPIYTSIGDNSMK 184 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 ++ P T + V++ +GF E SN + EM +I +TQ+ Sbjct: 185 SIGDNLYVPENANTIVVQNEDVSLLQGFTEQSNVDLGKEMADLI-ITQR 232 >gi|296157454|ref|ZP_06840289.1| flagellar basal-body rod protein FlgG [Burkholderia sp. Ch1-1] gi|295892226|gb|EFG72009.1| flagellar basal-body rod protein FlgG [Burkholderia sp. Ch1-1] Length = 262 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQNT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG Y V+ I IP +G G + S + + +M + Sbjct: 121 QTNAQGQLVTSSG-YQVIP----GITIPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQV 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G F +SG +PN+ L T+ +G++E SN N + E+ Sbjct: 176 ATFINPAGLDAKGENLFAETASSG-APNVAQPGLNGAG--TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|119953550|ref|YP_945760.1| flagellar basal-body rod protein FlgF [Borrelia turicatae 91E135] gi|119862321|gb|AAX18089.1| flagellar basal-body rod protein FlgF [Borrelia turicatae 91E135] Length = 286 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 23/158 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSE-VVGAIKNDIDQK---------- 55 + +A RL +A+N++N D G++ +++ F E ++ I +D K Sbjct: 14 SGMMAQRHRLDVIANNLANIDLTGYKKDLSVQKAFPEMLIRRINDDGLYKFPKGYLETAP 73 Query: 56 -ISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 I + +G E Y S E G TG LD AL + +F +++P G TR+G F + Sbjct: 74 VIGKLGTGVEENEIYTSFEQGPLKITGNPLDLALTDEGFFVVQTPEGERYTRNGSFILGA 133 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 +G L++ G YPV+ I KD F + +G+I Sbjct: 134 EGILMTKDG-YPVIGEKGY---IYLKDNNFKITAQGQI 167 >gi|296445196|ref|ZP_06887156.1| fagellar hook-basal body protein [Methylosinus trichosporium OB3b] gi|296257370|gb|EFH04437.1| fagellar hook-basal body protein [Methylosinus trichosporium OB3b] Length = 413 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN + A L V+ N++N+ TVG++ +FS V+ +++N D A Sbjct: 7 FNTSVMGMAAQASALGAVSQNIANSGTVGYKDATTQFSTVLSSVQNGSDPAGGVTAQTGV 66 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 ++ + G+ T + D A++G +F + G +LTR G F+ +G LV+ +G Y Sbjct: 67 AVTAQ-GNTQQTSSTTDLAIQGSGFFVVSDSSGNTLLTRAGSFEPDSEGRLVNKAGYY 123 >gi|163794152|ref|ZP_02188125.1| Flagellar basal body rod protein [alpha proteobacterium BAL199] gi|159180766|gb|EDP65285.1| Flagellar basal body rod protein [alpha proteobacterium BAL199] Length = 261 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 32/264 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 S NI A + + +++N++N +T G++ + +F ++ VG +D + Sbjct: 3 SLNIASTGMAAQQFNVEVISNNIANMNTTGYKRQRAEFQDLLYQDLRRVGTNSSDAGTIV 62 Query: 57 SF-------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 V + Y E G+ T + D A+ G +F +E P G TR G F+ Sbjct: 63 PSGIQIGVGVKTAATYRINEQGALTLTDNKFDLAILGQGYFQVELPNGETAYTRAGSFQT 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--GKVI-ATMGLYSVDM 165 DG+LV+ G Y V I IP + E G++ + G+V +G + + Sbjct: 123 NQDGTLVTPDG-YTV----QPGITIPSDTLSVTINESGQVFAQIDGQVQEQNVGQLQLAI 177 Query: 166 SQGFVRRENSG----ISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLT 217 Q EN G + + + G T +++GF+E SN + ++E+ +I Sbjct: 178 FQNDAGLENIGQNLLLETSASGAATTGVPGATGFGKLQQGFVEASNVDPVHEITNLI-TA 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ + + I E M+ + N+ Sbjct: 237 QRAYELNSKIIETSDQMMSTVNNV 260 >gi|85712254|ref|ZP_01043305.1| flagellar hook protein [Idiomarina baltica OS145] gi|85693881|gb|EAQ31828.1| flagellar hook protein [Idiomarina baltica OS145] Length = 466 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 23/152 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKI---SFV 59 SFNI L+ + ++ L A+N++N T GF+ + +F++V I + DQ+ S Sbjct: 2 SFNIALSGISSAQKDLDVTANNVANVRTTGFKGSRAEFADVFANNIFSGSDQQTGNGSAT 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVS 116 AS + S+ G+ T LD A+ G+ +FA S + TR G FK+ DD +V+ Sbjct: 62 ASVAQQFSQ--GTLNFTQNSLDMAISGNGFFATTSGIAQQDFTYTRAGAFKLNDDSYIVN 119 Query: 117 ASGK----YPVLD----------MASVPIQIP 134 G+ +PV AS PI+IP Sbjct: 120 NQGRFLHGFPVDSASGATQSTSLAASGPIRIP 151 >gi|89092136|ref|ZP_01165091.1| flagellar hook protein (FlgE)-like [Oceanospirillum sp. MED92] gi|89083871|gb|EAR63088.1| flagellar hook protein (FlgE)-like [Oceanospirillum sp. MED92] Length = 634 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFV 59 FN + A L + +N++N+ TVGF+T + +F + VVGA +++ V Sbjct: 4 FNTAVTGLKAASTDLDVIGNNIANSSTVGFKTSRTEFGDIYATAVVGAGSSNVAGSGVTV 63 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSAS 118 + + + G+ T LD A+ G +F L+ + G TR G F++ DG +VS S Sbjct: 64 SDIAQDF--QAGTIEFTNNNLDLAINGSGFFQLDDGQGGTTFTRAGAFQLDKDGFIVSKS 121 Query: 119 GKY 121 GK+ Sbjct: 122 GKF 124 >gi|332305617|ref|YP_004433468.1| flagellar basal-body rod protein FlgG [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172946|gb|AEE22200.1| flagellar basal-body rod protein FlgG [Glaciecola agarilytica 4H-3-7+YE-5] Length = 262 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/247 (21%), Positives = 117/247 (47%), Gaps = 30/247 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVASGKE 64 A + ++ +++N++N TVGF+ + F +++ N + S + +G + Sbjct: 14 AAQTDVAVISNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADTELPSGLMLGAGSK 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 ++ + G+ ++T LD +++G +F ++ P G I TR+G+F + D+G +V+ Sbjct: 74 VVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQPDGTIAYTRNGQFTLNDEGQIVTPGA 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KG----KVIATMGLYS-VDMSQGFVRR 172 + + I +P+ + + + GE+S +G +V+ + L V+M+ Sbjct: 134 GF----LLQPNITVPEDAQQITISQDGEVSASIRGQADPQVLGQISLSDFVNMTGLQPIG 189 Query: 173 ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +N + P++ + G+ TV +G LE SN N E+ +I +Q+ + + + Sbjct: 190 QNLYVETATSGAPIQGVPGLEGLGTVVQGALETSNVNVTEELVNLIE-SQRLYEMNSKVI 248 Query: 229 ENEKSML 235 SML Sbjct: 249 SAVDSML 255 >gi|331007439|ref|ZP_08330616.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] gi|330418746|gb|EGG93235.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] Length = 261 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 120/264 (45%), Gaps = 50/264 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ +++L+++++N++N T+GF+ +V F +++ I+ Sbjct: 11 GLSAQ---DRQLTSISNNLANASTIGFKRDRVNFEDLLYQIQRQPGGQSSQNTQLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + + VA+ K++ GS T LD A+ +F ++ P G TR+G+F + Sbjct: 68 LGTGVRVVATQKQFTG---GSLQVTEQPLDLAINNRGFFQIQMPSGETAYTRNGQFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIAT--- 157 +G +V+ASG + I IP+ + + G +S + G++ T Sbjct: 125 NGDIVNASGF-----LLEPSISIPENTNNITISQDGIVSASILGEATPQELGQITITDFV 179 Query: 158 --MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 GL ++ F + SG P T SG+ ++ +G LE+SN + + EM MI Sbjct: 180 NPAGLQALG-GNVFAQTAASG----DPQTGTAGESGLGSIIQGSLENSNVDIVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 TQ+ + + + ML+ I Sbjct: 235 T-TQRAYEMNSKVVSTADQMLQFI 257 >gi|296103610|ref|YP_003613756.1| Flagellar basal-body rod protein FlgF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058069|gb|ADF62807.1| Flagellar basal-body rod protein FlgF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 245 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 7/153 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++A A R + ++N++N+ T GFR F V I+ + + + VA Sbjct: 1 MDRAIYTAMSAANAALNRQAVTSNNLANSSTAGFRAQLAAFRSV--PIEGETLRTRALVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + +G TG LD AL D W A+ G TR+G +V DG L S +G Sbjct: 59 ESTPFHDTTMGPITHTGRSLDVALPQDGWLAVALDDGSEGYTRNGAIEVDQDGVL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 + P++ P+++P + + +G G +S G Sbjct: 118 R-PLMGDGG-PLEVPPQSHV-TIGSDGTVSALG 147 >gi|153001471|ref|YP_001367152.1| flagellar basal body rod protein FlgF [Shewanella baltica OS185] gi|160876202|ref|YP_001555518.1| flagellar basal body rod protein FlgF [Shewanella baltica OS195] gi|151366089|gb|ABS09089.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS185] gi|160861724|gb|ABX50258.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS195] gi|315268392|gb|ADT95245.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS678] Length = 247 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 19/213 (8%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF++ + + + A + ++ F + + G +TG Sbjct: 19 LALRANNLANANTDGFKSDMAQ-ARSMQAFGEGLPTRV-FAMTESPSANFRSGPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++GD WFA+++ G TR G G L + G PV+ A PI +P Sbjct: 77 DLDVAIKGDGWFAVQAKDGSEAYTRAGSLSFDSTGLLHNDRGN-PVMGDAG-PIVLPLPI 134 Query: 138 EIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSG----ISPNIPPTPLE 187 E ++ + G IS + +V+ +G L V+ + R G +S NI P Sbjct: 135 EKVSISQDGIISVRPQGATAEVVEEVGRLKLVNPGNAEMMRGEDGLFRLVSGNIAPA--- 191 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D S V V+ G +E SN N + EM +I L ++F Sbjct: 192 DPS-VGVESGAVEGSNVNPVDEMVSLIDLQRQF 223 >gi|304409977|ref|ZP_07391596.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS183] gi|307302310|ref|ZP_07582068.1| flagellar basal-body rod protein FlgF [Shewanella baltica BA175] gi|304351386|gb|EFM15785.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS183] gi|306914348|gb|EFN44769.1| flagellar basal-body rod protein FlgF [Shewanella baltica BA175] Length = 247 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 19/213 (8%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF++ + + + A + ++ F + + G +TG Sbjct: 19 LALRANNLANANTDGFKSDMAQ-ARSMQAFGEGLPTRV-FAMTESPSANFRSGPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++GD WFA+++ G TR G G L + G PV+ A PI +P Sbjct: 77 DLDVAIKGDGWFAVQAQDGSEAYTRSGSLSFDSTGLLHNDRGN-PVMGDAG-PIVLPLPI 134 Query: 138 EIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSGI----SPNIPPTPLE 187 E ++ + G IS + +V+ +G L V+ + R G+ S NI P Sbjct: 135 EKVSISQDGIISVRPQGATAEVVEEVGRLKLVNPGNAEMMRGEDGLFRLMSGNIAPA--- 191 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D S V V+ G +E SN N + EM +I L ++F Sbjct: 192 DPS-VGVESGAVEGSNVNPVDEMVSLIDLQRQF 223 >gi|315453484|ref|YP_004073754.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179] gi|315132536|emb|CBY83164.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179] Length = 262 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 33/255 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 L + + T ++N++N +TVGF+ + F+++ G +D + + + G Sbjct: 13 LGQQTHIDTTSNNIANVNTVGFKKQRADFNDLFYQALQYAGTSTSDTTKSPNGIEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + V S G+ LD A+ G +F ++ P G TR G FK+ D G++V+ Sbjct: 73 RTSSVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNFKIDDQGNMVTTE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGF--- 169 G Y ++ I PQ ++G G +S VI + L + G Sbjct: 133 G-YLLIPQ----ITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITLANFINPAGLHAL 187 Query: 170 ---VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + S P I P D G +++GFLE SN + EM +I + + + + Sbjct: 188 GDNLLAVTSASGPAIVGNPNGDGYG-QLRQGFLELSNVRLVEEMTDLITAQRAYEANSKT 246 Query: 227 IDENEKSMLEAIRNI 241 I + +ML+ + ++ Sbjct: 247 I-QTADNMLQTVNSL 260 >gi|190890363|ref|YP_001976905.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|218516082|ref|ZP_03512922.1| flagellar basal body rod protein FlgG [Rhizobium etli 8C-3] gi|190695642|gb|ACE89727.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] Length = 262 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 38/247 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI---------SF 58 A + L +A+N++N +T GF+ + +F++++ + N +Q + Sbjct: 13 AQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQAVVPEGANIGLGV 72 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSA 117 S L + G TG +LD AL G +F ++S G L TR G F D G LV+ Sbjct: 73 QTSAVRNLHLQ-GELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTV 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGF-- 169 G Y VL I IP + GE+S K V+ + L G Sbjct: 132 DG-YEVLP----GITIPTGSTELTISRSGEVSVKLPGATDTTVLGQLTLADFVNEAGLQP 186 Query: 170 ----VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF---NS 222 + +E + + P E+ +K+G+LE SN + + E+ ++I + + + Sbjct: 187 IGDNLFQETAASGEAVVGNPDEE-GFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSK 245 Query: 223 ITTLIDE 229 + T DE Sbjct: 246 VITTADE 252 >gi|125975103|ref|YP_001039013.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|125715328|gb|ABN53820.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] Length = 259 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 30/252 (11%) Query: 13 LALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVVGAIKNDIDQKISFVASGK---EYL 66 LA +++ V++N++N +T F+ I F +++ ++ D + + SG+ L Sbjct: 13 LANSKQMDVVSNNLANVNTTAFKKDTLILESFPDML--VRRINDSRSASNPSGRLGNVQL 70 Query: 67 SKEVGSFIS---------TGTELDFALEG--DAWFALESPRGI-----ILTRDGRFKVTD 110 +VG + T LD A+ A+F + P G TRDG F + Sbjct: 71 GNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNEEYTEYYTRDGSFALNA 130 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G LV+ G Y V+ V I E F+V + G I Q G+ +A + + + + Sbjct: 131 YGQLVTKEG-YLVMGQNGV---ITLNSENFSVSDDGTIIQDGEAVARLLIRNF-TDTTTL 185 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R+ S + T + GV V++G+LE SN NS+ EM MI + + + + ++ Sbjct: 186 RKVGSNLVQRTENTQEQPFDGV-VRQGYLEQSNVNSINEMINMITIMRSYEANQKILQAQ 244 Query: 231 EKSMLEAIRNIA 242 + ++ +A+ I Sbjct: 245 DGTLEKAVNEIG 256 >gi|154687758|ref|YP_001422919.1| FlhP [Bacillus amyloliquefaciens FZB42] gi|154353609|gb|ABS75688.1| FlhP [Bacillus amyloliquefaciens FZB42] Length = 273 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 36/260 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE---------- 64 L+Q++ TV+ N+SN+DT G++ +FSE++ + ID K + ++ Sbjct: 15 LQQQMDTVSSNLSNSDTTGYKARDSRFSELIRQQYDHIDDKKENSPNMRKTPPGLRLGAG 74 Query: 65 -----YLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVTDDG------ 112 L GS T +LD A + E+ + TRDG + G Sbjct: 75 TVMTPQLDSGQGSIKKTDRDLDIAFTSPYQYLQAEADGRRVYTRDGSLSLKPAGGNDRLL 134 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGLYSVDMSQ 167 L++A G P+LD PIQI + + G ++ Q G T +G+ +V+ Q Sbjct: 135 QLMTAGGN-PILDENGQPIQIDSSLTQLKISKTGTLTASDQAGTRSQTFNLGIVNVNNPQ 193 Query: 168 GFVRRENSGISPN-IPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI--HLTQK 219 ++ S N + +E+L+G + +++G LE SN + EM +I + + Sbjct: 194 ALHAEGDNLFSVNGAGASAIEELTGANRQAIGMEQGALEGSNVDMSKEMTGLIVSQRSYQ 253 Query: 220 FNSITTLIDENEKSMLEAIR 239 NS T + + ++ ++R Sbjct: 254 LNSRTITLGDQMLGLINSVR 273 >gi|148270379|ref|YP_001244839.1| hypothetical protein Tpet_1249 [Thermotoga petrophila RKU-1] gi|147735923|gb|ABQ47263.1| protein of unknown function DUF1078 domain protein [Thermotoga petrophila RKU-1] Length = 249 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 117/252 (46%), Gaps = 29/252 (11%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDIDQKISFVAS 61 +G+ +A +L +A++++N DT G++ + F EV + ++ + V Sbjct: 10 MGMLVDMA---KLDRIANDLANVDTAGYKQDREAFRAYLRREVFRQEPDPVESRTKKVPI 66 Query: 62 GK-EYLS--KEVGSFISTG------TELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 G EY + EV + +S G A+ G+ +F +E G TR+G F V +G Sbjct: 67 GPLEYATVLDEVRTDLSQGPVEKTDVPYHLAINGEGFFRIEFNGGEYYTRNGEFTVNSEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDMSQGFVR 171 +V+ G Y +LD ++ F V E+G + G ++ +G+Y+++ + F Sbjct: 127 YIVTNYGGY-LLDENGERVRFFDD---FTVDEEGYVRDAYGNIVTRIGVYNLENPEKFGN 182 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 +G + P+P E+ + +G++E SN +++ M MI + + + N+ Sbjct: 183 TLFTGEN----PSPSENFR---IMQGYVEKSNVDALKAMVDMISAMRHYELSQRAVTVND 235 Query: 232 KSMLEAIRNIAS 243 + + I ++AS Sbjct: 236 ELNGKLINSLAS 247 >gi|308182526|ref|YP_003926653.1| flagellar basal-body rod protein [Helicobacter pylori PeCan4] gi|308064711|gb|ADO06603.1| flagellar basal-body rod protein [Helicobacter pylori PeCan4] Length = 269 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 44/277 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG-----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG F V DG LV+ +G K ++ M I++ Q I + +I Q Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPDAEIEVDQNGGITFRDNEAQI-QA 179 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 G + L S + + I N+ E + ++ +++ LE SN N++ Sbjct: 180 G----ALALVSFSEPKNLKK-----IGQNLYTYQGEGVHQISDSGALRQYMLEKSNVNAV 230 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + + ++ ++ M EAI +A+ Sbjct: 231 REMSALIGINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|203288201|ref|YP_002223216.1| flagellar basal-body rod protein [Borrelia recurrentis A1] gi|201085421|gb|ACH94995.1| flagellar basal-body rod protein [Borrelia recurrentis A1] Length = 265 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 49/241 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------------VGAIKND 51 G+ AQ + + T+A+N+SN +T+GF+ I+ +F ++ V + N Sbjct: 11 GMKAQ---QYNVDTIANNLSNVNTIGFKKIRAEFEDLIYQTQRRAGTPATEDTVTPLGNQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + A+ + + E G+ T D A+EGD ++ + G TRDG FK+ Sbjct: 68 VGHGTKVSATHRLF---EQGNLQVTNLNTDVAIEGDGFYKVLLSDGTYGYTRDGSFKIDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--KVIATMGLYSVDMSQG 168 +G LV+ G Y +L S P + K+ I ISQ+G V GL +++ Q Sbjct: 125 NGHLVTNQG-YILLPEISFPEEYI-KNSI-------AISQEGIISVKVNEGLEPIELGQI 175 Query: 169 FVRR-----ENSGISPNIPPTPL---EDLSGV-------TVKRGFLEDSNANSMYEMGQM 213 + R + I NI + E++SG+ +K+G LE SN EM M Sbjct: 176 EIARFVNPAGLNAIGNNIFKETIGSGEEISGIPGSNGMGKLKQGMLEMSNVAIAEEMVTM 235 Query: 214 I 214 I Sbjct: 236 I 236 >gi|109899400|ref|YP_662655.1| flagellar basal body rod protein FlgG [Pseudoalteromonas atlantica T6c] gi|109701681|gb|ABG41601.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas atlantica T6c] Length = 262 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/247 (21%), Positives = 117/247 (47%), Gaps = 30/247 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVASGKE 64 A + ++ +++N++N TVGF+ + F +++ N + S + +G + Sbjct: 14 AAQTDVAVISNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADTELPSGLMLGAGSK 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ + G+ ++T LD +++G +F ++ P G I TR+G+F + D+G +V+ Sbjct: 74 VVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQPDGSIAYTRNGQFTLNDEGQIVTPGA 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KG----KVIATMGLYS-VDMSQGFVRR 172 + + I +P+ + + + GE+S +G +V+ + L V+M+ Sbjct: 134 GF----LLQPNITVPEDAQQITISQDGEVSASIRGQADPQVLGQISLSDFVNMTGLQPIG 189 Query: 173 ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +N + P++ + G+ TV +G LE SN N E+ +I +Q+ + + + Sbjct: 190 QNLYVETATSGAPIQGVPGLEGLGTVVQGALETSNVNVTEELVNLIE-SQRLYEMNSKVI 248 Query: 229 ENEKSML 235 SML Sbjct: 249 SAVDSML 255 >gi|217076898|ref|YP_002334614.1| flagellar basal-body rod protein FlgF [Thermosipho africanus TCF52B] gi|217036751|gb|ACJ75273.1| flagellar basal-body rod protein FlgF [Thermosipho africanus TCF52B] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 18/149 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQKISFVAS 61 +G+ A + +L T+++N+SN +T+G++ + F + + ++K+ Sbjct: 10 MGMLADIT---KLDTLSNNISNAETIGYKADNLAFKTYLEKRLHSFKPMPQEKKVEIKDI 66 Query: 62 GK---EYLSKEVGSFISTG----TE--LDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 GK + EV + S G TE LDFA++G +F +E + TR G FK++ DG Sbjct: 67 GKFEQAVILDEVKTDFSQGNIEHTENMLDFAIDGSGFFVVEKNGEKLYTRAGNFKISSDG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFN 141 LV++ G Y VLD I++ K ++ N Sbjct: 127 FLVTSEG-YYVLDKNDQRIKVFDKSDLIN 154 >gi|57505520|ref|ZP_00371447.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57016067|gb|EAL52854.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 270 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 38/253 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLEVITNNLANINTSGYKRDDVVIADFKRIFKETKDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV S ++Y GS +T LDFA+ D ++ +++ G + LT Sbjct: 61 TKDAARFVNSTIDRVPQISQDYTDFSTGSLKATNNPLDFAMTREDTFYLVQTKNGELRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI--------FNVGEKGEISQKGK 153 +DG F++ D+G LV+ G Y VL +S P+ I N + G IS G+ Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVL--SSNYFNNPEGAGIIIGNGAVHINADKNGNISVDGE 177 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANSMYEM-- 210 A + + VD + + ++ N T + DL +VK+GF + SN N + EM Sbjct: 178 DNARLFIAQVDDVRALEKDGDNTYKIN-DLTRIRDLEISNSVKQGFSQGSNVNPVSEMVG 236 Query: 211 ----GQMIHLTQK 219 +M+ + QK Sbjct: 237 LIEANRMVEMYQK 249 >gi|294140187|ref|YP_003556165.1| flagellar basal-body rod protein FlgG [Shewanella violacea DSS12] gi|293326656|dbj|BAJ01387.1| flagellar basal-body rod protein FlgG [Shewanella violacea DSS12] Length = 262 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 38/236 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + +S +++N++N T+G++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDISVISNNVANASTIGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQLPDGTAAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-VIATMGLYSVDMSQGFVRR 172 +V++ Y V I IP V +GE+S K I + + MS F+ Sbjct: 128 MVTSGSGYVV----QPAITIPDNATSITVSAEGEVSVKTPGTIENQVVGQLSMSD-FINP 182 Query: 173 ENSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 --SGLDPMGQNLYLETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|283956106|ref|ZP_06373593.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792426|gb|EFC31208.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] Length = 270 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGVQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLENSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|253998488|ref|YP_003050551.1| flagellar hook protein FlgE [Methylovorus sp. SIP3-4] gi|253985167|gb|ACT50024.1| flagellar basal body FlaE domain protein [Methylovorus sp. SIP3-4] Length = 402 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A + L + +N++N +TVGF+ + +F++V N + + Sbjct: 2 SFQQGLSGLNAASKSLDVIGNNVANANTVGFKQSRAEFADVYANALNGSGTGSAGIGVKV 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + ++ G+ +T LD A+ G+ +F L + I +R+G+F++ G +V++SG++ Sbjct: 62 ADIQRQFTQGNITNTENPLDIAINGNGFFRLSNSGAITYSRNGQFQLDKAGYIVTSSGEH 121 >gi|171320708|ref|ZP_02909721.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] gi|171094035|gb|EDT39133.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] Length = 388 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--SF 58 M S IG++ A + L T+ DN++N +T GF++ +F ++ + K S Sbjct: 1 MLDSIYIGMSGLAAYSKGLQTIGDNVANLNTPGFKSSAPRFQDLCDGRPTAREGKRSGSG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 VA L+ G + +LD A++GD AL I R G+F + DDG + + Sbjct: 61 VAYAHATLNFRQGELRGSTGQLDLAIDGDGLLALRDGDTIRYARTGQFHIADDGFVTERT 120 Query: 119 G--KYPVLDMAS--VPIQIPQK 136 K LD PI + Q+ Sbjct: 121 SGLKLATLDATGTLAPISLAQR 142 >gi|154253003|ref|YP_001413827.1| flagellar basal body rod protein FlgG [Parvibaculum lavamentivorans DS-1] gi|154156953|gb|ABS64170.1| flagellar basal-body rod protein FlgG [Parvibaculum lavamentivorans DS-1] Length = 261 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 37/260 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 S +I +A + + +++N++N T GF+ + +F ++ VGA +D + Sbjct: 3 SLSIAATGMMAQQLNVEVISNNIANMSTTGFKRGRAEFQDLLYQNLRRVGANSSDAGTIV 62 Query: 57 -SFVASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRGI-ILTRDGRFKV 108 S V G + V ++ G +LD A++G +F +E P G TR G F + Sbjct: 63 PSGVQVGLGVKTAAVNRIMTQGNMNNTENKLDVAIQGRGYFRIELPSGDDAYTRAGTFDI 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYS 162 DG L++A G Y + ++P P+ +I + G++ +++ M L + Sbjct: 123 GPDGQLITADG-YTLAPGITIP---PEATDIA-ISADGQVQVAIPGQTAPQIVGQMELVA 177 Query: 163 VDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G F SG +P I TP D G +V +GFLE SN N++ E+ +I Sbjct: 178 FANEGGLDPLGGNLFAETPASG-APTIG-TPGNDGLG-SVLQGFLETSNVNAVSEITSLI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + +I +++ M Sbjct: 235 TAQRAYEMNAKIITASDEMM 254 >gi|56964026|ref|YP_175757.1| flagellar basal body rod protein FlgG [Bacillus clausii KSM-K16] gi|56910269|dbj|BAD64796.1| flagellar hook protein FlgE [Bacillus clausii KSM-K16] Length = 267 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/263 (22%), Positives = 112/263 (42%), Gaps = 39/263 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ + +L V +N++N +T GF+ +V F ++V + ++ + S Sbjct: 8 GISGMKGFQTKLDVVGNNIANVNTHGFKKGRVMFQDMV---SQQVQGPMAATPNRGGVNS 64 Query: 68 KEVGSFI---------------STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 K++GS TG ELD A+ GD +FA++ TR G ++G Sbjct: 65 KQIGSGSMVGAIDTVHTGGGNQYTGRELDLAINGDGYFAVQIGDDTFYTRAGNIYFDNEG 124 Query: 113 SLVSASGKY---PVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVD 164 ++V++SG Y P + + + E V ++GEI Q+ V +G+ + Sbjct: 125 NVVNSSGAYLLGPDGNRLQIDPALLDDMESTTVNKQGEIIVSIQGQENPVTLQLGIANFA 184 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVT---------VKRGFLEDSNANSMYEMGQMIH 215 +G NS TP + + ++ G+LE SN + E +MI Sbjct: 185 NPEGL----NSAGGSLFTATPASGPANLVIPGTQGTGDIQSGYLEMSNVDLADEFSEMIV 240 Query: 216 LTQKFNSITTLIDENEKSMLEAI 238 + F + + +I +++ + E + Sbjct: 241 AQRGFQANSRIITTSDEILQELV 263 >gi|302390534|ref|YP_003826355.1| flagellar basal-body rod protein FlgF [Thermosediminibacter oceani DSM 16646] gi|302201162|gb|ADL08732.1| flagellar basal-body rod protein FlgF [Thermosediminibacter oceani DSM 16646] Length = 260 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/258 (22%), Positives = 113/258 (43%), Gaps = 33/258 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKIS--FVASGK 63 G+ A++A R +++N++N +T GF+ + F + + D Q + FV Sbjct: 11 GMLAEMA---RTDVISNNLANINTTGFKKDRAVFRAFPEMNIHRYDDPQPVGAGFVIDPV 67 Query: 64 EYLS--------KEV------GSFISTGTELDFALEGDA-----WFALESPRGIILTRDG 104 Y+ E+ G T LD A+E A +F +++P GI TRDG Sbjct: 68 PYIGVLGTGAGLDEIRVDFTQGRIEMTSNPLDLAIEDTAAGETSFFEIQTPAGIRYTRDG 127 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + DG LV+ G Y + + + ++ K EI +GE+ G ++ + + + Sbjct: 128 SFTINADGFLVTREGYYVMGENGPINLRNGSKVEI---NTEGEVYLDGLMVDRLRIAAFP 184 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++ ++ P P + + +G LE +N N++ EM +I + + + Sbjct: 185 AGLSLEKQGDNLYRAQGVPLP----ANARIIQGALERANVNAVSEMVNLISAFRAYEANQ 240 Query: 225 TLIDENEKSMLEAIRNIA 242 ++ ++ ++ A+ IA Sbjct: 241 RMVRAHDDTLAGAVNEIA 258 >gi|170694394|ref|ZP_02885548.1| flagellar basal-body rod protein FlgG [Burkholderia graminis C4D1M] gi|170140817|gb|EDT08991.1| flagellar basal-body rod protein FlgG [Burkholderia graminis C4D1M] Length = 262 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 37/266 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA Sbjct: 1 MNRSLYIAATGMNAQQSQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 54 QKISFV--ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + S + +G + ++ E G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG Y V+ I +P +G G + S + + +M + Sbjct: 121 QTNAQGQLVTSSG-YQVIP----AITVPTNATSLTIGSDGVVSITVAGSTNSQQLGSMQI 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G F +SG +PN+ L T+ +G++E SN N + E+ Sbjct: 176 ATFINPAGLDAKGENLFAETASSG-APNVAQPGLNGAG--TLNQGYVEASNVNVVQELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ I + ML+ + Sbjct: 233 MIQ-TQRAYEINSKAVTTSDQMLQTL 257 >gi|332525064|ref|ZP_08401244.1| flagellar basal-body rod protein FlgG [Rubrivivax benzoatilyticus JA2] gi|332108353|gb|EGJ09577.1| flagellar basal-body rod protein FlgG [Rubrivivax benzoatilyticus JA2] Length = 260 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 110/253 (43%), Gaps = 41/253 (16%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND-------IDQKISFVAS 61 + +L +++N++N T GF+ V+F +++ GA ++ + + A+ Sbjct: 16 QTKLDVISNNLANVGTNGFKRGGVQFEDLIYQNLRQAGAASSEQSTLPTGLQVGLGVRAA 75 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 G + G+ TG D A++G+ +F ++ P G TRDG F+V + G LV+ G Sbjct: 76 GTTRNFSQ-GNLQQTGNSYDIAIKGNGFFQIQMPDGTTGYTRDGGFQVDNAGQLVTNQG- 133 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVDM 165 YPV I IP + V + G + Q I GL S+ Sbjct: 134 YPV----QPGITIPADAKTVTVADDGTVQVTTAGNATPTTVGQLQLANFINPAGLESLGG 189 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + + SG +PN +L +++GF+E SN N + E+ MI TQ+ + + Sbjct: 190 NL-YAETAASG-TPNTGTPGTNELG--ALQQGFVETSNVNVVEELVNMIA-TQRAYELNS 244 Query: 226 LIDENEKSMLEAI 238 + ML+ + Sbjct: 245 KAIQTSDQMLQKL 257 >gi|77460469|ref|YP_349976.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf0-1] gi|77384472|gb|ABA75985.1| putative flagellar hook protein [Pseudomonas fluorescens Pf0-1] Length = 443 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 8/114 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFNIGL+ A ++L +N++N T GF++ + +F +V +G+ I + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATAGFKSSRAEFEDVYSSTRLGSGSKVIGNGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 +++ ++ +TG LD + G +F + + I TR G FKV ++G Sbjct: 62 ANVSQQFTQGDIN---NTGNVLDMGINGSGFFTMSNNGSISYTRAGTFKVDNNG 112 >gi|168186142|ref|ZP_02620777.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] gi|169295678|gb|EDS77811.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] Length = 259 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/249 (22%), Positives = 107/249 (42%), Gaps = 29/249 (11%) Query: 16 EQRLSTVADNMSNTDTVGFRT---IKVKFSEVV----------GAIKNDIDQKISFVASG 62 E + +++N++N TVG++ + F +V+ +KNDI Sbjct: 16 EAQQDVISNNLANATTVGYKKDDLVGKSFKDVMMHNYDKVVRGKHVKNDIGMLSMGCKLD 75 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 + Y + G+ ST + DFAL+G +F + TRDG F V G LV+++G Sbjct: 76 QTYTNFTQGALQSTDKKTDFALQGKGFFTVSRGGRNFYTRDGHFHVDRGGYLVNSTGDKV 135 Query: 123 V----LDMASVPIQIPQ--KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN-- 174 + A+ PI + Q K + + GE+ + + + + + + + Sbjct: 136 IGKNLRTGATEPINVMQGGKPSKISCNDSGEMFVGNDLAYKVQVVDFNNYEALSKEGDNL 195 Query: 175 -SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 +G +PN+ + VK+G+LE SN N M + M+ + F S L+ +++ Sbjct: 196 YTGGNPNVIENTM-------VKQGYLEKSNINVMEAVSDMMMSMRNFESNQKLVQSLDET 248 Query: 234 MLEAIRNIA 242 + + + + Sbjct: 249 LGKTVNEVG 257 >gi|253996319|ref|YP_003048383.1| flagellar hook protein FlgE [Methylotenera mobilis JLW8] gi|253982998|gb|ACT47856.1| flagellar basal body FlaE domain protein [Methylotenera mobilis JLW8] Length = 421 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 12/146 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A ++L + +N+SN +TVGF+ + +F++V + + Sbjct: 2 SFQQGLSGLNAASKQLEVIGNNVSNANTVGFKQSRAEFADVFANSITGGGGSQIGIGTNL 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK- 120 ++++ G+ +T LD A+ G+ +F + S + TR+G+F++ G +V ++ K Sbjct: 62 ATVAQQFTQGNITATNNSLDIAINGNGFFRMSSGGAVTYTRNGQFQLDKQGFIVDSASKR 121 Query: 121 ---YP------VLDMASVPIQIPQKD 137 Y +L A+V +QI D Sbjct: 122 LTGYAADANGNILSGAAVDLQINTAD 147 >gi|222095395|ref|YP_002529455.1| flagellar basal body rod protein flgg [Bacillus cereus Q1] gi|221239453|gb|ACM12163.1| flagellar basal-body rod protein [Bacillus cereus Q1] Length = 267 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 39/240 (16%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTINS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------------KGKVIATM 158 D L ++SG Y V+D+ + I+IP+ F V GEI + K VIA + Sbjct: 123 DRYLQTSSGAY-VMDVNNERIKIPENVNFF-VSNNGEIYREVNDGTLQKPDIKRIVIAQL 180 Query: 159 GLYSVDMSQG--FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 +VD ++REN + + + DL T VK LE+SN + EM ++ Sbjct: 181 QTKTVDAEANSRLMQRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 238 >gi|149183418|ref|ZP_01861851.1| flagellar basal-body rod protein [Bacillus sp. SG-1] gi|148848863|gb|EDL63080.1| flagellar basal-body rod protein [Bacillus sp. SG-1] Length = 280 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/270 (24%), Positives = 121/270 (44%), Gaps = 46/270 (17%) Query: 13 LALEQRLSTVADNMSNTDTVGF---RTIKVKFSEVVGAIKND-------------IDQKI 56 L+ +++ +++N+SN +T G+ R+ F E++ A++ I +++ Sbjct: 13 LSQQRKTEMLSNNLSNANTPGYKADRSSMKAFPEMLLALQGQQQNIPTQNGLSLPISRQV 72 Query: 57 SFVASGKEYLSKEVGSFIS-----TGTELDFAL-------------EGDAWFALESPRGI 98 + SG Y+ + + +F+ T D AL G +F LE G Sbjct: 73 GGLNSGV-YMQETIPAFMQGDLQETERLTDIALVDGNIPADPETGLPGGVFFTLEGADGA 131 Query: 99 I-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 TR+G F + G L SASG Y VLD IQ+P + F + E G I Sbjct: 132 PRYTRNGNFTLDGQGYLTSASGLY-VLDTEGQRIQLPSDN--FKIAEDGRILVDEVETGR 188 Query: 158 MGL-YSVDMSQGFVRRENSGISPNIPPTPLEDL--SGVT--VKRGFLEDSNANSMYEMGQ 212 +G ++V+ ++ + +E G+ PL D SG T +++GF+E SN ++ M Sbjct: 189 LGTGFTVNANR--LAKEGDGLFRTEDNEPLADAYNSGATFNMQQGFIERSNVDTARTMTD 246 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M+ + F + ++ ++SM +A+ I Sbjct: 247 MMTAYRAFEANQKILQAYDRSMEKAVNEIG 276 >gi|222053611|ref|YP_002535973.1| protein of unknown function DUF1078 domain protein [Geobacter sp. FRC-32] gi|221562900|gb|ACM18872.1| protein of unknown function DUF1078 domain protein [Geobacter sp. FRC-32] Length = 293 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 20/140 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGKEYL 66 G++ L + ++ + +N+SN +TVGF+ ++ FS+++ I N+ S + G + Sbjct: 10 GVSGLLNNGEAMNVIGNNISNVNTVGFKGARMLFSDMLSQNIGNN-----SQIGRGMQIQ 64 Query: 67 SKE----VGSFISTGTELDFALEGDAWFALESPRGI---------ILTRDGRFKVTDDGS 113 E GSF ST D ++G+++FAL+ P + L+R G F V D Sbjct: 65 KVENLFGQGSFESTENVTDLGIQGNSFFALKPPTTVAPVAAQNAAFLSRAGAFHVDKDLY 124 Query: 114 LVSASGKYPVLDMASVPIQI 133 LV+ G Y VLD A PI+ Sbjct: 125 LVNPDG-YQVLDTAGQPIRF 143 >gi|84388093|ref|ZP_00990989.1| Flagellar basal body rod protein FlgG [Vibrio splendidus 12B01] gi|84377160|gb|EAP94030.1| Flagellar basal body rod protein FlgG [Vibrio splendidus 12B01] Length = 262 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N T+GF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F +E P G +R+G+F + DG+ Sbjct: 68 LGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQFTLNGDGA 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V++ Y + I IP+ VG GE+S Sbjct: 128 IVTSGQGYAL----QPEIVIPEDAISVTVGNDGEVS 159 >gi|312136039|ref|YP_004003377.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor owensensis OL] gi|311776090|gb|ADQ05577.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor owensensis OL] Length = 267 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 65/278 (23%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G+ AQ + + +++N++N +T F+ K +F +++ + D VA + + Sbjct: 10 LGMKAQ---QTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRAD----VVAGDGKPV 62 Query: 67 SKEVGSFIS---------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTD- 110 S ++G ++ T LD A++G+ +F + +P G TRDG FKV++ Sbjct: 63 SLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVSNV 122 Query: 111 DGS--LVSASGKYPVLDMASVPIQIPQK-------DEIFNVGEKGE-------------- 147 +G LV++ G YPVL I +P+ DE+ + K + Sbjct: 123 EGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDEMGRITYKDQEGQVQDSGLKIKIV 181 Query: 148 --ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFLEDSN 203 I+ +G + LY+V + G P E++ G + +GFLE SN Sbjct: 182 RFINPQGLLAEGKNLYNVSAASG-------------EPVSEEEMEGQKSRILQGFLEMSN 228 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + EM ++I + Q+ I + + ML N+ Sbjct: 229 VQVVDEMVKLI-IAQRAYEINSKAIQTADDMLSIANNL 265 >gi|238752865|ref|ZP_04614330.1| Lateral flagellar rod protein (FlgG-like) [Yersinia rohdei ATCC 43380] gi|238708904|gb|EEQ01157.1| Lateral flagellar rod protein (FlgG-like) [Yersinia rohdei ATCC 43380] Length = 261 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 49/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 GLAAQ + +++ +++N++N +T GF+ +V F ++ A N I Sbjct: 11 GLAAQ---DAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRTPGTPLDQNNATPNGIQ 67 Query: 54 --QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTD 110 + V + K++ VG+ T ELD A+ G +F +E S G+ TR G + Sbjct: 68 LGSGVKVVGTQKQFT---VGNIKVTKGELDVAIAGKGFFQIETSDGGLAYTRAGNLAINA 124 Query: 111 DGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK----------GKV----- 154 DG LV+A G M +P I++P +G+ G ++ + G++ Sbjct: 125 DGVLVNAQG------MPLIPQIELPAGSSNLAIGKDGTVTAQVGGESEPAELGQITLVDF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + GL +V G + +E + P E+ G ++ G LE SN + EM MI Sbjct: 179 VNPAGLEAVG---GNMYKETVASGTAVEGVPGEEAFG-QLEHGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKF 220 + + + Sbjct: 235 TVQRAY 240 >gi|223040701|ref|ZP_03610970.1| flagellar basal-body rod protein [Campylobacter rectus RM3267] gi|222878065|gb|EEF13177.1| flagellar basal-body rod protein [Campylobacter rectus RM3267] Length = 270 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 40/251 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-------------A 47 M + A + RL +A+N++N +T+GF+ V VVG Sbjct: 1 MNNGYYQATGAMVTQFNRLDVIANNLANINTIGFKRDDV----VVGDFERIFKEYRDELP 56 Query: 48 IKNDIDQKISFVAS--------GKEYLSKEVGSFISTGTELDFALEG-DAWFALE-SPRG 97 IKN F+ ++Y+ G + +LDFA++ D +F +E P Sbjct: 57 IKNHTKDAAKFLNRTIDRVPQISEQYVDFSQGGLKFSNNDLDFAMKREDLFFLVEVKPGD 116 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVL--DMAS---VPIQIPQKDEIFNVGEKGEISQKG 152 + LT++G F + +DG LV+ G Y VL D S IQIP+ E F+ + G + Sbjct: 117 VRLTKNGSFNLDEDGFLVTKEG-YKVLPSDYFSNNFQGIQIPEG-ERFSADKNGNLYSNE 174 Query: 153 KVIATMGLYSVDMSQGFVRR-ENSGISPNIPPTPLEDLSGV--TVKRGFLEDSNANSMYE 209 + +A + + + + +N + PN+ LED+ G V + + SN N++ E Sbjct: 175 EPLARLYIAQPKEIRNLTKEGDNLYVLPNL--KELEDVGGEIDAVAWKYTQISNVNAVTE 232 Query: 210 MGQMIHLTQKF 220 M +I TQ+F Sbjct: 233 MVGLIE-TQRF 242 >gi|118443708|ref|YP_877999.1| flagellar basal body rod protein FlgG [Clostridium novyi NT] gi|118134164|gb|ABK61208.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] Length = 266 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 107/256 (41%), Gaps = 36/256 (14%) Query: 16 EQRLSTVADNMSNTDTVGFR-----------TIKVKFSEVVGA--IKNDIDQKISFVASG 62 E + +++N++N TVG++ + + +VVG +KNDI Sbjct: 16 EAQQDVISNNLANATTVGYKKDNLVGKSFKDVMMHNYDKVVGGKHVKNDIGMLSMGSKLD 75 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI------ILTRDGRFKVTDDGSLVS 116 + Y + G ST DFAL+G +F + + TRDG F V G LV+ Sbjct: 76 QSYTNFTQGVLESTDKSTDFALQGRGFFVVSRNSRVAGGGQNFYTRDGHFHVERTGYLVN 135 Query: 117 ASGKY----PVLDMASVPIQI------PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 +SG + A PI + P K + ++GE+ G + + + D Sbjct: 136 SSGDRVMGQNMRTGAMEPIYLGNERTGPSK---ISCNDRGELFLDGSLKYKINVVDFDNY 192 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + ++ ++ S P +G VK+ +LE SN N M E+ M+ + F S L Sbjct: 193 ETLRKQGDNLYSGGNPRA----YNGAIVKQNYLEKSNVNVMEEVSDMMMTMRNFESNQKL 248 Query: 227 IDENEKSMLEAIRNIA 242 + ++++ + + + Sbjct: 249 VQSLDETLGKTVNEVG 264 >gi|315121847|ref|YP_004062336.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495249|gb|ADR51848.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 262 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 42/249 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQKI 56 +F I A A + L +A+N++N +T G++ + +F++ G+ DQ + Sbjct: 3 AFTIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKAAGSPSQSADQSV 62 Query: 57 S----FVASGKEYLS-KEV---GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFK 107 + SG + S + V G + TG LD AL G WF +E+P + ++ TR G F Sbjct: 63 VPEGINIGSGVQISSVRNVYTQGELVHTGNSLDLALVGRGWFQVETPDKTVMYTRAGSFN 122 Query: 108 VTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEI-SQKGK----------VI 155 + G LV++ G +P I IP++ V G+I + GK +I Sbjct: 123 IDSKGQLVTSDGN------TLLPGITIPEEARELTVSRSGQIMAVTGKNSDFQPLGQLLI 176 Query: 156 ATM----GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 A GL ++ V R + +S + +D +K+G+LE SN +++ E+ Sbjct: 177 ANFVNEAGLRNI--GDNLVTR--TSVSGEAIISSPDDAGFAHIKQGYLEASNVDAVKEIS 232 Query: 212 QMIHLTQKF 220 +MI + + Sbjct: 233 EMISAQRAY 241 >gi|187935622|ref|YP_001885067.1| flagellar basal body rod protein FlgG [Clostridium botulinum B str. Eklund 17B] gi|187723775|gb|ACD24996.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum B str. Eklund 17B] Length = 256 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 18/130 (13%) Query: 5 FNIGLAAQL---ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 FNI AQ A +++L +++++ NT T G++ V+FS++ + +D+K Sbjct: 2 FNIFANAQSGMNAYQEKLDYLSNDLVNTSTTGYKATDVQFSDL---LTESLDRKGTPLVN 58 Query: 56 -----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 + V G +Y G+ ++TG + D A++G + A G I TRDG K+ Sbjct: 59 KDAINGTGVKLGMDYRKDTQGNLLTTGIKTDIAIDGKGYIASVQQDGTIAYTRDGNLKID 118 Query: 110 DDGSLVSASG 119 +G+LV A G Sbjct: 119 SNGTLVDARG 128 >gi|225871934|ref|YP_002753388.1| flagellar hook protein flgE [Acidobacterium capsulatum ATCC 51196] gi|225793054|gb|ACO33144.1| flagellar hook protein flgE [Acidobacterium capsulatum ATCC 51196] Length = 409 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 16/148 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVAS 61 +SF+I L A L T+A+N+SN +T F++ + F ++ I N V + Sbjct: 2 SSFSIPLTGLEASSTSLDTIANNLSNMNTTAFKSQQASFGDLFYQQIGNSGSGDPLEVGA 61 Query: 62 GKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G + + G+ TG D AL G +F + + G TRDG F +T G L + Sbjct: 62 GVQVAATNTNFTQGTVSETGNATDVALNGSGFFVVRNSDGTPAYTRDGNFTLTSSGDLTT 121 Query: 117 ASGK----YPV------LDMASVPIQIP 134 G+ YP + A PIQIP Sbjct: 122 QGGQAVMGYPAANGVVNTNSALSPIQIP 149 >gi|124516715|gb|EAY58223.1| Flagellar basal body rod protein FlgG [Leptospirillum rubarum] Length = 261 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 20/151 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDI-DQKISFVASGKEY 65 A + L + +N++N +T GF+ + F +++ G ++ + +Q + + G Sbjct: 14 AQQTSLDVITNNLANVNTTGFKRQRANFQDLMYQTLVPPGEAQSLLGNQSPTGMQVGLGV 73 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 S V GSF T LD A++G+ +F + P G TRDG F + G LV+ Sbjct: 74 RSGSVQKIFLQGSFRQTNNPLDLAIQGNGFFQISLPDGRTAYTRDGTFSIDGQGRLVTQD 133 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G P + PI +P + NV GE+S Sbjct: 134 G-LPT----NPPITVPPNAKSVNVSPAGEVS 159 >gi|319944133|ref|ZP_08018411.1| flagellar basal-body rod protein FlgG [Lautropia mirabilis ATCC 51599] gi|319742627|gb|EFV95036.1| flagellar basal-body rod protein FlgG [Lautropia mirabilis ATCC 51599] Length = 260 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 44/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKN---------D 51 GL AQ + ++ ++ N++N T G++ + F ++ VGA + Sbjct: 11 GLDAQ---QTQMDVISHNLANVSTNGYKRSQAVFEDLIYQNMRQVGAQSSADTQLPTGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + VA+ + + G+ T D A+ G +F L+ P G TRDG F Sbjct: 68 LGTGVRPVATSRLFTQ---GNLQQTSNSFDLAISGHGFFQLQMPDGTTGYTRDGSFHPDA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G LV+++G P+ S PI IP VG G +S + G+ + Q Sbjct: 125 QGQLVNSNG-MPL----SPPITIPPGTRDVTVGNDGTVSVT--IAGQEGVTQIGQIQLAT 177 Query: 171 RRENSGISP---------NIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLT 217 + +G+ P + TP GV +++G+LE SN N + E+ MI T Sbjct: 178 FQNAAGLDPQGQNVFKESDASGTPTAATPGVNGAGLLQQGYLETSNVNVVEELVSMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + ML I + Sbjct: 237 QRAYEINSKAIQTSDQMLARISQL 260 >gi|221069322|ref|ZP_03545427.1| flagellar basal body FlaE domain protein [Comamonas testosteroni KF-1] gi|220714345|gb|EED69713.1| flagellar basal body FlaE domain protein [Comamonas testosteroni KF-1] Length = 422 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + N++N+ T GF+ + F+E++ + + S + Sbjct: 3 FQQGLSGLNAASKNLDVIGHNIANSSTTGFKASRADFAEMIASAIGSASGQSSGIGVNVA 62 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 +S++ GS STG LD A+ G+ +F ++ G I TR G F + +G+L Sbjct: 63 AVSQQFRQGSITSTGNNLDLAINGNGFFVVKQSDGSIAYTRAGNFGLDKEGNL 115 >gi|258621051|ref|ZP_05716085.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM573] gi|258625279|ref|ZP_05720187.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM603] gi|262166280|ref|ZP_06034017.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM223] gi|262170827|ref|ZP_06038505.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|258582452|gb|EEW07293.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM603] gi|258586439|gb|EEW11154.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM573] gi|261891903|gb|EEY37889.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|262025996|gb|EEY44664.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM223] Length = 262 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 54/263 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ + ++T+++N++N TVGF+ + F ++ +I+Q Sbjct: 11 GLDAQ---QTNIATISNNLANASTVGFKKGRAVFEDL---FYQNINQPGAQSSQNTRLPS 64 Query: 56 -ISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + A K +++V G+ +T LD +EGD +F + P G I +R+G+F + D Sbjct: 65 GLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDD 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVD 164 +G++V++ Y + I IP+ +G GE+S Q +V+ + +VD Sbjct: 125 EGAIVTSGSGYRL----QPEIVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQ--ITTVD 178 Query: 165 MSQGFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMG 211 F+ G+ P N+ PT P E + G+ V++ LE SN N E+ Sbjct: 179 ----FINP--GGLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELV 232 Query: 212 QMIHLTQKFNSITTLIDENEKSM 234 MI + + + +I +K M Sbjct: 233 NMIEAQRVYEMNSKVISAVDKMM 255 >gi|206603525|gb|EDZ40005.1| Flagellar basal body rod protein [Leptospirillum sp. Group II '5-way CG'] Length = 261 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 20/151 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDI-DQKISFVASGKEY 65 A + L + +N++N +T GF+ + F +++ G ++ + +Q + + G Sbjct: 14 AQQTSLDVITNNLANVNTTGFKRQRANFQDLMYQTLVPPGEAQSLLGNQSPTGMQVGLGV 73 Query: 66 LSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 S V GSF T LD A++G+ +F + P G TRDG F + G LV+ Sbjct: 74 RSGSVQKIFLQGSFRQTNNPLDLAIQGNGFFQISLPDGRTAYTRDGTFSIDGQGRLVTQD 133 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G P + PI +P + NV GE+S Sbjct: 134 G-LPT----NPPITVPPNAKSVNVSPAGEVS 159 >gi|289208115|ref|YP_003460181.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. K90mix] gi|288943746|gb|ADC71445.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. K90mix] Length = 246 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 28/219 (12%) Query: 25 NMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL 84 N++N +T GFR + V ++ + + G + G STG +LD A+ Sbjct: 25 NLANANTDGFRQALANANTV--PVRGPVFDSRDYAQLGTDGTDFSKGQMQSTGRDLDIAI 82 Query: 85 EGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 E + A++ P G TR G V G L +A G + D PI IP ++I +G Sbjct: 83 EDQGFIAVQGPDGEEGYTRAGSLHVDAFGLLRTAQGHQVLGDGG--PIAIPPSEKI-EIG 139 Query: 144 EKGEISQKGKVIATMGLYSVDM--------------SQGFVRRENSGISPNIPPTPLEDL 189 G IS + + + L +++ G R + G PP Sbjct: 140 TDGTISVRPQGVGPEALAAIERIRLVNPDVNELERGDDGLFRMADGG---EAPPD----- 191 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + V V G LE SN N++ + +MI L++ F ++D Sbjct: 192 AEVRVVSGMLEGSNVNTVEALTRMIELSRHFEMQVKMMD 230 >gi|116250482|ref|YP_766320.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. viciae 3841] gi|115255130|emb|CAK06204.1| flgG [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI---------SF 58 A + L +A+N++N +T GF+ + +FS+++ + N +Q + Sbjct: 13 AQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVVPEGANIGLGV 72 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSA 117 S L + G TG +LD AL G +F ++S G L +R G F D G LV+ Sbjct: 73 QTSAVRNLHLQ-GELTQTGNDLDVALIGKGFFQIQSTDGTTLYSRAGAFNKNDQGQLVTI 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIAT-MGLYSVDMSQGFVRREN 174 G Y VL I IP + G++S K G AT +G ++ FV Sbjct: 132 DG-YEVLP----GITIPTGSTELTISRSGQVSAKLPGATEATELGQLTL---ADFVNE-- 181 Query: 175 SGISP---NI---PPTPLEDLSG-------VTVKRGFLEDSNANSMYEMGQMIHLTQKF- 220 +G+ P N+ P E + G +K+G+LE SN + + E+ ++I + + Sbjct: 182 AGLQPLGDNLFQETPASGEAVIGNPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYE 241 Query: 221 --NSITTLIDE 229 + + T DE Sbjct: 242 MNSKVITTADE 252 >gi|77165837|ref|YP_344362.1| hypothetical protein Noc_2374 [Nitrosococcus oceani ATCC 19707] gi|254434880|ref|ZP_05048388.1| flagellar basal-body rod protein FlgF [Nitrosococcus oceani AFC27] gi|76884151|gb|ABA58832.1| Protein of unknown function DUF1078 [Nitrosococcus oceani ATCC 19707] gi|207091213|gb|EDZ68484.1| flagellar basal-body rod protein FlgF [Nitrosococcus oceani AFC27] Length = 246 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 14/170 (8%) Query: 71 GSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G STG ELD ++G+ W A++SP G TR G K+T +G L + +G +PVL + Sbjct: 69 GPLQSTGRELDVVVQGEGWLAVQSPTGGEAYTRAGNLKITSNGILTTGAG-HPVLGEGGI 127 Query: 130 PIQIP--QKDEI-----FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP-NI 181 I IP QK EI ++ G+ + V+ + L + + Q + E+ I+ N Sbjct: 128 -IAIPPAQKIEIGADGTLSIRPLGQAANTLAVLDRIKLVNPPLDQ-LQKGEDGLITMING 185 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 P + L V++ G LE SN + + + +MI L +++ T ++ E Sbjct: 186 EKAPADAL--VSLVSGKLESSNVSGVDALVEMIALARQYEMQTKMMKTAE 233 >gi|126175145|ref|YP_001051294.1| flagellar basal body rod protein FlgF [Shewanella baltica OS155] gi|125998350|gb|ABN62425.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS155] Length = 247 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 19/213 (8%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF++ + + + A + ++ F + + G +TG Sbjct: 19 LALRANNLANANTDGFKSDMAQ-ARSMQAFGEGLPTRV-FAMTESPSANFRSGPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++GD WFA+++ G TR G G L + G PV+ A PI +P Sbjct: 77 DLDVAIKGDGWFAVQAKDGSEAYTRAGSLSFDSTGLLHNDRGN-PVMGDAG-PIVLPLPI 134 Query: 138 EIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSGI----SPNIPPTPLE 187 E ++ + G IS + +V+ +G L V+ + R G+ S NI P Sbjct: 135 EKVSISQDGIISVRPQGATAEVVEEVGRLKLVNPGNAEMMRGEDGLFRLMSGNIAPA--- 191 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D S V V+ G +E SN N + EM +I L ++F Sbjct: 192 DPS-VGVESGAVEGSNVNPVDEMVSLIDLQRQF 223 >gi|149188068|ref|ZP_01866363.1| polar flagellar FlgG [Vibrio shilonii AK1] gi|148838056|gb|EDL54998.1| polar flagellar FlgG [Vibrio shilonii AK1] Length = 262 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 119/260 (45%), Gaps = 48/260 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N T+G++ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTIGYKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ +T LD +EGD +F + P G I +R+G+F + D+G+ Sbjct: 68 LGAGSKVVATQKIHTPGNAQTTTNSLDMMIEGDGFFQVLMPDGNIGYSRNGQFTLNDEGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V++ Y + I IP+ VG GE+S Q +V+ + +VD Sbjct: 128 IVTSGSGYAL----EPEIAIPEDAISITVGTDGEVSVRVRGQQDNQVVGN--ITTVD--- 178 Query: 168 GFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 F+ G+ P N+ PT P E + G+ +++ LE SN N E+ MI Sbjct: 179 -FINP--GGLEPIGQNLYLPTGASGDPNEGVPGLDGFGQIRQSMLETSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 236 EAQRVYEMNSKVISSVDKMM 255 >gi|291562042|emb|CBL40858.1| fagellar hook-basal body proteins [butyrate-producing bacterium SS3/4] Length = 263 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 11/148 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M SF G A ++LS V++N++N + GF+ FSE++ ND + + + Sbjct: 1 MNMSFYTGAAGAGQFTKKLSVVSNNLANINNTGFKPKTAAFSELIHYNLNDSENAQTELQ 60 Query: 61 SG------KEYLSKEVGSFISTGTELDFA-LEGDAWFALESPRG--IILTRDGRFKV--T 109 +G + + TG E D+A +E +A+F ++ P I TR+G F Sbjct: 61 TGSGARVERTWTDFSTAGATQTGKEYDYAIMEPNAFFMIQDPASGEITYTRNGHFHRGER 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKD 137 +DG ++ VLD P+++ D Sbjct: 121 EDGFYLTTEDGKLVLDQNRQPLKLEVTD 148 >gi|330502735|ref|YP_004379604.1| flagellar basal body rod protein FlgF [Pseudomonas mendocina NK-01] gi|328917021|gb|AEB57852.1| flagellar basal body rod protein FlgF [Pseudomonas mendocina NK-01] Length = 246 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 52/229 (22%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L A+N++N T GFR D +Q S G+ Y ++ Sbjct: 19 LRAHANNLANVSTSGFR--------------RDFEQARSMPLFGESYPARVFAMSERPAT 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 GS TG +LD A+ G W A+++P G R + G L + +G PV+ Sbjct: 65 DFRPGSLQETGRDLDVAVGGKGWIAVQAPDGSEAYVRTASLNIDALGMLRTGNG-LPVMG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM--------------SQGFVR 171 A PI +P + ++ +G+ G IS + L VD + G +R Sbjct: 124 NAG-PIAVPPEQKV-EIGQDGTISIRALGENPNVLAEVDRIKLVNPDPKSMEKGTDGLIR 181 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P + E + V V GFLE SN N++ EM ++ L+++F Sbjct: 182 VKG---QPEV-----EADATVQVTSGFLEASNVNAVEEMTAILSLSRQF 222 >gi|308050371|ref|YP_003913937.1| flagellar basal-body rod protein FlgF [Ferrimonas balearica DSM 9799] gi|307632561|gb|ADN76863.1| flagellar basal-body rod protein FlgF [Ferrimonas balearica DSM 9799] Length = 245 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 112/233 (48%), Gaps = 14/233 (6%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 +L++ A+N++N + GF+ + + + A + ++ F + + + + G+ +T Sbjct: 17 HQLASHANNLANAKSDGFKA-DMSQARAMQAFGEGLPTRV-FAMTERPATNFDPGAIKTT 74 Query: 77 GTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G LD A++ WF ++ G LTR G + + G L+++ G+ P++ +A PI +P Sbjct: 75 GRTLDVAIKDQGWFVVQDDGGNEALTRAGSLRFDEAGMLMNSEGQ-PIMGLAG-PIFLPL 132 Query: 136 KDEIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 E + + G I+ + + +G L V+ + + G+ + P + Sbjct: 133 PIEKVEIAQDGMITVRPQGAPANAMEEVGQLRLVNPPLNSLTKGEDGLFRRLDGQPYANA 192 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKSMLEAIR 239 VT+ G +E SN N + E+ MI ++F+ L+ +EN+++ + +R Sbjct: 193 VEVTLVTGAVEGSNVNPVNELVGMIEAQRQFDMQLKLMKTAEENDRAHAQLMR 245 >gi|225850285|ref|YP_002730519.1| flagellar basal-body rod protein FlgG [Persephonella marina EX-H1] gi|225645911|gb|ACO04097.1| flagellar basal-body rod protein FlgG [Persephonella marina EX-H1] Length = 266 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 35/235 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + L +++N++N +TVGF+ + F +++ G + ++ + S + Sbjct: 11 GMGAQ---QTNLDVISNNIANVNTVGFKRSRANFEDLIYQDIKDPGVMSSNETRVPSGIQ 67 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGS 113 G +V GS I T LD A++GD +F +E P G TR G F++ ++G Sbjct: 68 IGLGVKLSDVSKIFTQGSLIKTDKPLDIAIQGDGFFKIELPGGGEAYTRAGNFQIDNEGY 127 Query: 114 LVSASGKY--PVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 +V+ +G P + +++ V I I +++ V +G Q + + + LY Sbjct: 128 IVTPNGYRLSPNIQISAPETLVSISISPNGKVYVVRNEGG-QQTTEELTDIKLYKFINPA 186 Query: 168 G--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G F E SG P I P D G + +GFLE SN N + EM +I Sbjct: 187 GLKAIGENLFKYTEASG-EP-IEGDPNTDGFG-KLAQGFLEASNVNIVEEMVNLI 238 >gi|171321838|ref|ZP_02910739.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MEX-5] gi|171092876|gb|EDT38128.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MEX-5] Length = 413 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 74/144 (51%), Gaps = 16/144 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VA 60 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I +A Sbjct: 3 YQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG- 119 S ++ + G+ +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 63 SVQQQFGQ--GTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGL 120 Query: 120 --------KYPVLDMA-SVPIQIP 134 K V++ A +VP+Q P Sbjct: 121 NLMGYLSDKNGVVNTAQTVPLQAP 144 >gi|27363703|ref|NP_759231.1| flagellar basal body rod protein FlgG [Vibrio vulnificus CMCP6] gi|37679149|ref|NP_933758.1| flagellar basal body rod protein FlgG [Vibrio vulnificus YJ016] gi|320157107|ref|YP_004189486.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus MO6-24/O] gi|27359819|gb|AAO08758.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus CMCP6] gi|37197891|dbj|BAC93729.1| flagellar basal body rod protein FlgG [Vibrio vulnificus YJ016] gi|319932419|gb|ADV87283.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus MO6-24/O] Length = 262 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 44/258 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ + ++T+++N++N T+GF+ + F ++ +I+Q Sbjct: 11 GLDAQ---QTNIATISNNLANASTIGFKKGRAVFEDL---FYQNINQPGGQSSQNTQLPS 64 Query: 56 -ISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + A K +++V G+ +T LD +EGD +F + P G I +R+G+F + Sbjct: 65 GLMLGAGSKVVATQKVHTHGNAQTTTNALDLMVEGDGFFQITMPDGNIGYSRNGQFTLNG 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVD 164 +G +V++ YP+ I IP+ VG GE+S Q +V+ + + Sbjct: 125 EGVVVTSGSGYPL----EPEIVIPEDAISITVGTDGEVSVRIRGQQNNQVVGQITITDFV 180 Query: 165 MSQGFVRRENSGISPNIPP----TPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHL 216 G E G + +P P E + G+ V++ LE SN N E+ MI Sbjct: 181 NPGGL---EPIGQNLYLPTGASGDPQEGVPGLDGLGEVRQSMLETSNVNVTEELVNMIEA 237 Query: 217 TQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 238 QRVYEMNSKVISSVDKMM 255 >gi|188997557|ref|YP_001931808.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium sp. YO3AOP1] gi|188932624|gb|ACD67254.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium sp. YO3AOP1] Length = 266 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 104/245 (42%), Gaps = 55/245 (22%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE----------VVGAIKNDIDQKIS 57 G+ AQ + L ++ N++N +TVGF+ + F + V+ + +N + I Sbjct: 11 GMEAQ---QTNLDVISHNIANVNTVGFKRSRANFEDLIYQDVRDPGVLSSTQNRVPAGIQ 67 Query: 58 F-----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 V+ + S+ GS + T LD A++G+ +F +E P G TR G F++ ++ Sbjct: 68 IGLGVKVSDVAKMFSQ--GSLMKTDNPLDVAIQGEGFFKIEMPDGSEAFTRAGNFQIDNE 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI--------------AT 157 G +V+ G S IQI + + N+ IS GKVI Sbjct: 126 GYIVNPEGY-----RLSPNIQISAPETVLNI----SISPNGKVIVVRNSGGQQTTEEVGN 176 Query: 158 MGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 + LY G F E SG P I P D G + +GFLE SN N + E Sbjct: 177 IKLYKFINPAGLKAIGGNLFKYTEASG-QP-IEGDPNTDAFG-KLTQGFLEMSNVNIVEE 233 Query: 210 MGQMI 214 M +I Sbjct: 234 MVNLI 238 >gi|86153287|ref|ZP_01071491.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843013|gb|EAQ60224.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 270 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGICIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|238764394|ref|ZP_04625344.1| Flagellar basal-body rod protein flgG [Yersinia kristensenii ATCC 33638] gi|238697420|gb|EEP90187.1| Flagellar basal-body rod protein flgG [Yersinia kristensenii ATCC 33638] Length = 260 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+ASG + V ++P + +D I +V +G+ + Q G++ T G Sbjct: 125 NGQLVTASG-FQVQPAITIPANALKMTIGRDGIVSVTLQGQTATQQVGQLTLTTFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L SV + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LESV--GENLYQETASSGAPN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLTQL 260 >gi|187932642|ref|YP_001885066.1| flagellar basal body rod protein FlgG [Clostridium botulinum B str. Eklund 17B] gi|187720795|gb|ACD22016.1| flagellar hook-basal body complex protein [Clostridium botulinum B str. Eklund 17B] Length = 257 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV----LDM 126 G+F ST + DF ++G +F ++ + TR G FK+ G L++ +G Y + Sbjct: 84 GAFKSTDSNTDFGIDGRGFFTVQRGNERLFTRSGDFKIDQQGYLITGNGDYVLGRNNATG 143 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 A PI + KDE G S G+ +T L + D ++ + E G + P+ Sbjct: 144 AEEPIYVG-KDEFSLDGNNNLQSAAGE--STHTLLTADFTE-YAPLEKVGDNYYKGDNPV 199 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + V V++G LE SN N E+ +++ + ++F + + ++++ +A I S Sbjct: 200 YN-AVVNVRQGVLETSNVNPTEELVKLMEIKRQFETNQKFVSMQDETVQKAANEIGS 255 >gi|118588711|ref|ZP_01546119.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] gi|118438697|gb|EAV45330.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] Length = 260 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 36/245 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND----- 51 + +I A E + +++N++N T GF+ + F +++ G +D Sbjct: 3 ALHIAATGMKAQELNVEVISNNVANMRTTGFKKQRADFQDLLYQNLRRMGTETSDSGTIV 62 Query: 52 -----IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGR 105 I + A+G+ +S+ GS TG ELD A+ G+ +F ++ P G TRDG Sbjct: 63 PTGIQIGSGVKIAATGR-IMSQ--GSLEQTGKELDLAIRGEGFFQIDMPDGTTAYTRDGS 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKV-----I 155 F+ +G LV+ G Y V ++P + I + V + G Q G++ + Sbjct: 120 FERDANGQLVTIDG-YSVNPGITIPQTVKDVTISNTGVVQGVDQAGNTVQLGQIQLARFV 178 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL ++ ++ + SG P D S TV++ FLE +N +++ E+ +I Sbjct: 179 NKAGLEAIG-DNLYLETDASGAPETSNPG---DESYGTVQQYFLEMANVDAVTEIADLIS 234 Query: 216 LTQKF 220 + + Sbjct: 235 AQRAY 239 >gi|283834454|ref|ZP_06354195.1| flagellar basal-body rod protein FlgF [Citrobacter youngae ATCC 29220] gi|291070001|gb|EFE08110.1| flagellar basal-body rod protein FlgF [Citrobacter youngae ATCC 29220] Length = 245 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A Q LEQ++S A+N++N +T GFR S ND K+ +++KE Sbjct: 12 ATQTLLEQQIS--ANNLANVNTNGFRADMAMAS-------ND---KVKGGGFDTRFMAKE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 SPSGVNDSTGVAEKTERPLDVAIQGSGYIAVQDKAGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + + Sbjct: 119 VVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNS 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTADGIPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|212637786|ref|YP_002314311.1| flagellar basal body rod protein [Shewanella piezotolerans WP3] gi|212559270|gb|ACJ31724.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 244 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 10/215 (4%) Query: 23 ADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 A+N++N DT GF+ + + + V A N + ++ + S++ G+ TG LD Sbjct: 23 ANNLANADTTGFKADLERVNAMSVTATGNSLQTRV-LAQTQSSGFSQQSGALNPTGRTLD 81 Query: 82 FALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ F++ + G TR G V D ++ G+ P+ + PI +P+ E+F Sbjct: 82 LAINDAGLFSVMTDDGEGYTRSGAI-VPDANGQLTLDGR-PIAGVDG-PIVLPEYRELF- 137 Query: 142 VGEKGEIS---QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 VG+ G +S + +I +G L V+ + + G+ PL VTV G Sbjct: 138 VGDDGRLSIVADENGIIEEVGQLKLVNPDMNIMSKGLDGLLYTQDRQPLPANDEVTVSSG 197 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 FLE SN ++ E+ + L+++F L+ EK Sbjct: 198 FLEASNVQAVGELIAAMDLSRQFEIQVKLMKSAEK 232 >gi|283780137|ref|YP_003370892.1| flagellar basal-body rod protein FlgG [Pirellula staleyi DSM 6068] gi|283438590|gb|ADB17032.1| flagellar basal-body rod protein FlgG [Pirellula staleyi DSM 6068] Length = 266 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 30/254 (11%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKISFVASGKEY-LSKE 69 +L+ +L +A+N++N +T GF+ + F ++ + DQ+ + A+G L Sbjct: 15 SLQTKLDVIANNLANVNTTGFKRGRANFEDLFYRQEKLPGSQDQQQNLTATGTAIGLGSR 74 Query: 70 V---------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 V G+F TG +LD A+EG + ++ P GI + +R G + G LV S Sbjct: 75 VSSVQTNFNQGAFQETGGQLDVAIEGQGFLRVQDPSGITVYSRAGNLSINAQGQLVMGSA 134 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVR-- 171 + L +V PQ ++ G + Q + IA + L + +G ++ Sbjct: 135 QTGRLIDPNVS--FPQDTMAISITADGRVLVRQFGQQDLQQIAQIQLATFPNPEGLLKLG 192 Query: 172 ----RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + I P GV +++G LE SN + E+ +I + F + I Sbjct: 193 ENLYSQTDASGQEIVDNPGNQGIGV-LRQGMLEASNVEPVQELIDLITTQRSFELNSQAI 251 Query: 228 DENEKSMLEAIRNI 241 ++ +L+ I N+ Sbjct: 252 QAGDQ-ILQLISNL 264 >gi|255322393|ref|ZP_05363539.1| flagellar basal-body rod protein [Campylobacter showae RM3277] gi|255300766|gb|EET80037.1| flagellar basal-body rod protein [Campylobacter showae RM3277] Length = 270 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 40/251 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-------------A 47 M + A + RL +A+N++N +T+GF+ V VVG Sbjct: 1 MNNGYYQATGAMVTQFNRLDVIANNLANINTIGFKRDDV----VVGDFERIFKEYRDELP 56 Query: 48 IKNDIDQKISFVAS--------GKEYLSKEVGSFISTGTELDFALEG-DAWFALE-SPRG 97 I+N F+ ++Y+ G + +LDFA++ D +F +E P Sbjct: 57 IENHTKDAAKFLNRTIDRVPQISEQYVDFSQGGLKFSNNDLDFAMKREDLFFLVEVKPGD 116 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKG 152 + LT++G F + +DG LV+ G Y VL IQIPQ E F+ + G + Sbjct: 117 VRLTKNGSFNLDEDGFLVTKEG-YKVLPSDYFTNNFQGIQIPQG-ERFSADKNGNLYSNE 174 Query: 153 KVIATMGLYSVDMSQGFVRR-ENSGISPNIPPTPLEDLSGV--TVKRGFLEDSNANSMYE 209 + +A + + + + +N + PN+ LED+ G V + + SN N++ E Sbjct: 175 EPLARLYIAQPKEIRNLTKEGDNLYVLPNL--KELEDVGGEIDAVAWKYTQISNVNAVTE 232 Query: 210 MGQMIHLTQKF 220 M +I TQ+F Sbjct: 233 MVGLIE-TQRF 242 >gi|163802601|ref|ZP_02196493.1| polar flagellar FlgG [Vibrio sp. AND4] gi|159173684|gb|EDP58503.1| polar flagellar FlgG [Vibrio sp. AND4] Length = 262 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 38/255 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + ++T+++N++N TVGF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNIATISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T LD +EGD +F + P G I TR+G+F + +G+ Sbjct: 68 LGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQFTLDGEGT 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 LV++ Y V I IP+ VG GE+S Q V+ + + Sbjct: 128 LVTSGSGYAV----EPEIVIPEDAISITVGTDGEVSVRVRGEQNNVVVGQLTITDFVNPG 183 Query: 168 GFVRRENSGISPNIPP----TPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 G E G + +P P E + G+ +++ LE SN N E+ MI + Sbjct: 184 GL---EPIGQNLYLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNVTEELVNMIEAQRV 240 Query: 220 FNSITTLIDENEKSM 234 + + +I +K M Sbjct: 241 YEMNSKVISSVDKMM 255 >gi|253574272|ref|ZP_04851614.1| flagellar hook-basal body protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846749|gb|EES74755.1| flagellar hook-basal body protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 273 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 47/245 (19%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKISFVASG--------- 62 ++QRL +ADN++N++TVG++ + F + + ++N D++ SG Sbjct: 15 IQQRLDLLADNIANSNTVGYKRKEANFEDTLTRVQNQTSDLNLPGRATPSGFTLGFGSRM 74 Query: 63 -KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD------GSL 114 + ++ GS TG D A++G+A F++ P G I TR G F + D L Sbjct: 75 SQVTVNYAQGSIQETGNMTDLAIQGNAMFSVMLPGGDIAYTRGGDFHIQPDPDDAESAFL 134 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG----------LYSVD 164 V+ G Y VL+ I P ++ I +G ++AT G L + + Sbjct: 135 VNQLG-YVVLNSEGDSITFPSDAKL-------SIDAEGNILATNGEGTTEVGRIALLTAE 186 Query: 165 MSQGFVRREN------SGISPN---IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 V+++ +G+ P + L ++++G LE SN + M +M+ Sbjct: 187 RPDALVQKDGNLFVLAAGLDPAEAMVDNLSLPQEQRASLRQGALEASNVDLTEAMAEMLQ 246 Query: 216 LTQKF 220 + + + Sbjct: 247 VQRAY 251 >gi|302872712|ref|YP_003841348.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor obsidiansis OB47] gi|302575571|gb|ADL43362.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor obsidiansis OB47] Length = 267 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 65/278 (23%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G+ AQ + + +++N++N +T F+ K +F +++ + D VA + + Sbjct: 10 LGMKAQ---QTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRAD----VVAGDGKPV 62 Query: 67 SKEVGSFIS---------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTD- 110 S ++G ++ T LD A++G+ +F + +P G TRDG FKV++ Sbjct: 63 SLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVSNV 122 Query: 111 DGS--LVSASGKYPVLDMASVPIQIPQK-------DEIFNVGEK---GEISQKGKVIATM 158 +G LV++ G YPVL I +P+ DE + K G+I G I + Sbjct: 123 EGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDQEGQIQDSGLKIKIV 181 Query: 159 -------------GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFLEDSN 203 LY+V + G P E++ G + +GFLE SN Sbjct: 182 RFINPQGLLAEGKNLYNVSAASG-------------EPVSEEEMEGQKSRILQGFLEMSN 228 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + EM ++I + Q+ I + + ML N+ Sbjct: 229 VQVVDEMVKLI-IAQRAYEINSKAIQTADDMLSMANNL 265 >gi|221639494|ref|YP_002525756.1| Flagellar proximal rod protein FlgF [Rhodobacter sphaeroides KD131] gi|221160275|gb|ACM01255.1| Flagellar proximal rod protein FlgF [Rhodobacter sphaeroides KD131] Length = 251 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 18/210 (8%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASGKEYLSKEVGSFISTGTELD 81 A N++N GFR + D +F G S G TG +D Sbjct: 23 AQNLANQTVPGFRRDLTNEGDARFLKAMDAASARAFQTERGPHLFSSAPGLLNQTGEPMD 82 Query: 82 FALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP------ 134 A+ + WF ++ G L+R G ++T DG L++ +G+ +LD A PI++P Sbjct: 83 VAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNGAGEA-MLDPAMQPIELPPVRALI 141 Query: 135 --QKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 + I + G Q+ G +IAT V + + R + P PP Sbjct: 142 VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTLRKDPDGRIRARGEPLPPPD-----Q 196 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V +G LE SN N+M E+ I L + F Sbjct: 197 RARVLQGVLEGSNVNTMEELVSSIELQRTF 226 >gi|312126442|ref|YP_003991316.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor hydrothermalis 108] gi|311776461|gb|ADQ05947.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor hydrothermalis 108] Length = 267 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 122/271 (45%), Gaps = 51/271 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G+ AQ + + +++N++N +T F+ K +F +++ + D VA + + Sbjct: 10 LGMKAQ---QTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRAD----VVAGDGKPV 62 Query: 67 SKEVGSFIS---------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTD- 110 S ++G ++ T LD A++G+ +F + +P G TRDG FKV++ Sbjct: 63 SLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVSNV 122 Query: 111 DGS--LVSASGKYPVLDMASVPIQIPQK-------DEIFNVGEK---GEISQKG------ 152 +G LV++ G YPVL I +P+ DE + K G+I G Sbjct: 123 EGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQDSGFKIKIV 181 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFLEDSNANSMYEM 210 + I GL +++G S S + P E++ G + +GFLE SN + EM Sbjct: 182 RFINPQGL----LAEGKNLYNVSATSGD--PVSEEEMEGQKSRILQGFLEMSNVQVVDEM 235 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++I + Q+ I + + ML N+ Sbjct: 236 VKLI-IAQRAYEINSKAIQTADDMLSMANNL 265 >gi|224825164|ref|ZP_03698270.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] gi|224602835|gb|EEG09012.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] Length = 419 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A ++L V +N++N T GF+ + +F+++ G+ + + + Sbjct: 3 FQQGLSGLAAASKQLEVVGNNVANASTNGFKRSRSEFADMYGSSLYGVSNAQAGIGVRTA 62 Query: 65 YLSK--EVGSFISTGTELDFALEGDAWFALESPRGI----ILTRDGRFKVTDDGSLVSAS 118 +S+ + G+ STG LD A+ G +F L+SP +R+G F+V +G LV+ Sbjct: 63 EVSQLFDQGNINSTGNNLDLAISGKGFFVLKSPSAASSQDAYSRNGAFQVDANGYLVNGD 122 Query: 119 G 119 G Sbjct: 123 G 123 >gi|218778847|ref|YP_002430165.1| hypothetical protein Dalk_0994 [Desulfatibacillum alkenivorans AK-01] gi|218760231|gb|ACL02697.1| Putative Flagellar basal-body rod protein FlgG or FlgF [Desulfatibacillum alkenivorans AK-01] Length = 228 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 25/216 (11%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV--GSFI 74 +R +++N++N T GF K DI + + Y ++ G Sbjct: 17 ERFEVISNNLANVSTPGF--------------KRDI---YALDKNSNPYTETDMSEGPVQ 59 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG ELDF+++G+ +F + G+ TR GRF + D +V+A+G + D PI + Sbjct: 60 HTGNELDFSIQGEGFFEMLGENGLRYTRQGRFLLNADKEIVNAAGDKLLSDRGD-PIVVD 118 Query: 135 QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG--ISPNIPPTPLEDLSGV 192 D ++ G + GK + T+ + + + + + +E + +S LE G Sbjct: 119 GGD--LSLAPDGTLMVDGKELETIAVVNFENPK-MLSKEGATYYVSEGGAGERLERPEGT 175 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 V +G+LE SN EM +M+ + + + ++ Sbjct: 176 IVNQGYLEQSNVIVPQEMVKMMESLRTYETFQKYMN 211 >gi|254255088|ref|ZP_04948405.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] gi|124899733|gb|EAY71576.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] Length = 241 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 14 ALEQR-LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 A QR L A+N++N T GFR D+ + S G Y S+ + Sbjct: 13 AYAQRALGVRANNLANAQTAGFRA--------------DLVRAESLTPDGVGYDSRHLAH 58 Query: 73 FIST------------GTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +ST G LD A+ G + +E+ G TR G + DG+L + +G+ Sbjct: 59 LVSTDVDVAPGPMSETGRSLDVAIAGAGYLTVETDDGPAYTRAGHLSIDGDGAL-TVNGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEI----SQKGKVIATMGLYSVDMSQGFVRRENSG 176 PVL PI +P +G G I S + +V L V+ + + G Sbjct: 118 -PVLGDGG-PIVLPAHRSA-TIGGDGTISVVPSGESEVQTVARLLLVNPDPADLVKNPEG 174 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + VTVK G LE SN +++ EM Q + LT+ F Sbjct: 175 LLVSRSGAEYDADETVTVKGGHLEGSNISAIEEMMQTLSLTRSF 218 >gi|251797436|ref|YP_003012167.1| hypothetical protein Pjdr2_3448 [Paenibacillus sp. JDR-2] gi|247545062|gb|ACT02081.1| protein of unknown function DUF1078 domain protein [Paenibacillus sp. JDR-2] Length = 270 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/271 (22%), Positives = 119/271 (43%), Gaps = 38/271 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V FS+++ + + + Sbjct: 1 MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKGGRVMFSDILSQTTSGVTASLEGEQ 60 Query: 61 SGKEYLSKEV---------------GSFISTGTELDFALEGDAWFAL----ESPRGIILT 101 G +K++ GS ++T D ++GD +FA+ +SP LT Sbjct: 61 GGVN--AKQIGLGVTISAIDTIHTPGSAMTTNVPTDLRIDGDGFFAVSAGGDSPT--YLT 116 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI----SQKGKVIAT 157 R G F + + LV+A G + VL PI + + F++G+ G I + + +A Sbjct: 117 RAGNFTLDGNRQLVNADGMF-VLSSDGEPIVLGEDVTSFSIGQDGSILAVTADGTEAVAQ 175 Query: 158 MGLYSVDMSQGF------VRRENSGISPN----IPPTPLEDLSGVTVKRGFLEDSNANSM 207 +G+ V G + R + +P+ I +L + G LE SN + Sbjct: 176 LGVVKVVNPSGLEKVGGNLYRVTANANPDGEFEIVTADDPELGTGAIIAGQLEMSNVDLT 235 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E +MI + F + + +I +++ + E + Sbjct: 236 NEFTEMIVAQRGFQANSRIITTSDEILQEVV 266 >gi|306820920|ref|ZP_07454540.1| flagellar basal-body rod protein FlgG [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551034|gb|EFM39005.1| flagellar basal-body rod protein FlgG [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 270 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 48/250 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------- 58 G+ AQ + + +++N+SN +T GF+ K +F +++ N + + Sbjct: 10 GMKAQ---QLNVDVISNNISNVNTTGFKAQKTEFKDLLYTYSNPVSNEAKMGQPVNLQVG 66 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGI------ILTRDGRF 106 VA+ + Y + GS T D A+ +G+A+F +E P + TRDG F Sbjct: 67 HGVMPVATSRIYTT---GSADKTDNPTDLAMVQGNAFFVVEDPNAPGEEAKRLYTRDGSF 123 Query: 107 K--VTDDG-SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---GKVIATMGL 160 K V D+ +LV++ G+ VL +QIP+ + F V + G ++ K G+++ L Sbjct: 124 KFSVEDNQLTLVTSQGE-KVLTTDDGYVQIPENSKDFAVSQNGTVTAKSAEGELLELGQL 182 Query: 161 YSVDM----------SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 +V S +V +NSG P + + +G+LE SN + EM Sbjct: 183 KTVTFVNPEGLKAVGSNFYVPTDNSG----EPVQEENETRESKIYQGYLEMSNVQLVDEM 238 Query: 211 GQMIHLTQKF 220 +MI + + Sbjct: 239 VRMITAQRAY 248 >gi|54308099|ref|YP_129119.1| flagellar basal body rod protein FlgG [Photobacterium profundum SS9] gi|46912525|emb|CAG19317.1| putative polar flagellar FlgG [Photobacterium profundum SS9] Length = 262 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N T+GF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQDTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T +D +EG+ +F + P G I TR+G+F + DG Sbjct: 68 LGAGSKVVATQKVFTQGNTQTTNNSMDMMIEGEGFFQILLPDGNIGYTRNGQFTINGDGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +V+ Y V I IP+ VG GE+S + Sbjct: 128 MVTTGSGYVV----QPEIAIPEDAVGITVGNDGEVSAR 161 >gi|146311248|ref|YP_001176322.1| flagellar basal body rod protein FlgG [Enterobacter sp. 638] gi|145318124|gb|ABP60271.1| flagellar basal-body rod protein FlgG [Enterobacter sp. 638] Length = 260 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANSLSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + SG+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGSGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|91224197|ref|ZP_01259460.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269965646|ref|ZP_06179759.1| Putative flagellar basal-body rod protein flgG [Vibrio alginolyticus 40B] gi|91191108|gb|EAS77374.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269829714|gb|EEZ83950.1| Putative flagellar basal-body rod protein flgG [Vibrio alginolyticus 40B] Length = 261 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 43/237 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G+AAQ + +++ +++N++N +TVGF+ +V F ++ +I+ N++ I Sbjct: 11 GMAAQ---DTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNELPSGIQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + +++V G+ +T ELD A+ G +F +E+ G I+ TR+G+F +G Sbjct: 68 LGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHRNSEGL 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVG----------------EKGEISQKGKVIAT 157 +V++ G P+ IQIP F+VG + G+I+ K I Sbjct: 128 MVNSQG-LPL----EPQIQIPDNAVSFSVGVDGTVTTTTADDPTPQQLGQIT-LAKFINP 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 GL ++ G + RE P D +G+ +K+G LE SN + EM MI Sbjct: 182 AGLEAMG---GNLFRETEASGPADELIAGADGAGI-IKQGALEGSNVQVVEEMVDMI 234 >gi|17548566|ref|NP_521906.1| flagellar hook protein FlgE [Ralstonia solanacearum GMI1000] gi|17430814|emb|CAD17496.1| probable flagellar hook protein flge [Ralstonia solanacearum GMI1000] Length = 401 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F GL+ A + L + N++N +TVG++ +F +V VGA N I Q + Sbjct: 3 FQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDVT 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + + G+ TG LD A+ G ++ + S + TR+G+F+ +G ++SA Sbjct: 63 KVSQSFTQ---GNVTVTGNPLDIAINGTGFYRMVDASSGQVSYTRNGQFQTDKNGYIISA 119 Query: 118 SGK 120 +G+ Sbjct: 120 TGQ 122 >gi|258622489|ref|ZP_05717511.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM573] gi|258585189|gb|EEW09916.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM573] Length = 243 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 15/205 (7%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 ++N+SN DT GFR ++ +E + D + + V + + G I TG LD Sbjct: 23 SNNLSNADTAGFRA-DMERAESFQLYGSGFDGR-TMVVTNSATTRFDSGDVIKTGRPLDV 80 Query: 83 ALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ G+ + +E+P+ G TR G KV G++ +PVL S P+ +P+ +I Sbjct: 81 AIIGEGYLTVEAPQGGEAYTRAGNIKVDAFGAMTING--FPVLG-ESGPMVLPEYQKI-E 136 Query: 142 VGEKGEIS-----QKGKV-IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK 195 +GE+G++S K+ + T+ L + Q +++E+ + N+ P V + Sbjct: 137 IGERGQVSVIPPGGGAKIEVGTLKLTKPPIDQ--LQKESDSLLHNVNGEPFPVDETVQLV 194 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKF 220 +E SN +++ E+ ++ LT+ F Sbjct: 195 PEHVEGSNVSAVDELLSVMSLTRNF 219 >gi|237799206|ref|ZP_04587667.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806225|ref|ZP_04592929.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022061|gb|EGI02118.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027338|gb|EGI07393.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 442 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + K+ + ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRTEFADQYAQSIRGTSGKSSVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ GS ++TGT LD A+ GD +F L + + TR G F +G +V Sbjct: 62 TAAVSQQF---SQGS-LTTGTANSLDLAINGDGFFMLSNNGEKLFTRAGAFHTDKEGYVV 117 Query: 116 SASG 119 ++SG Sbjct: 118 NSSG 121 >gi|206562843|ref|YP_002233606.1| flagellar hook protein FlgE [Burkholderia cenocepacia J2315] gi|198038883|emb|CAR54845.1| flagellar hook protein 2 FlgE2 [Burkholderia cenocepacia J2315] Length = 414 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 16/144 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF+ + F+++ ++ ++ +I +AS + Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK--- 120 + + G+ ST + LD A+ G+ +F + S +RDG F +G++V A G+ Sbjct: 66 QNFGQ--GTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLM 123 Query: 121 -YP-----VLDMA-SVPIQIPQKD 137 Y V++ A +VP+Q P + Sbjct: 124 GYAAGAGGVINTAQTVPLQAPTNN 147 >gi|288940409|ref|YP_003442649.1| fagellar hook-basal body protein [Allochromatium vinosum DSM 180] gi|288895781|gb|ADC61617.1| fagellar hook-basal body protein [Allochromatium vinosum DSM 180] Length = 436 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 10/128 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+IGL+ A + L +N++N+ T+GF+ + +F+++ + K S V Sbjct: 2 SFSIGLSGLQAAAKDLEVTGNNVANSGTIGFKKSRAEFADIYASSFYTCVNK-SAVGVRL 60 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALESPR---GIILTRDGRFKVTDDGSLVSAS 118 + ++++ G+ T LD A+ G+ +F L S G + TR+G F+V DG +V++S Sbjct: 61 DAVTQQFSQGNVELTDNTLDLAINGEGFFVLNSEAGQDGKVYTRNGAFQVDRDGYVVNSS 120 Query: 119 GK----YP 122 G+ YP Sbjct: 121 GQRLQAYP 128 >gi|268680164|ref|YP_003304595.1| flagellar basal-body rod protein FlgG [Sulfurospirillum deleyianum DSM 6946] gi|268618195|gb|ACZ12560.1| flagellar basal-body rod protein FlgG [Sulfurospirillum deleyianum DSM 6946] Length = 262 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 70/135 (51%), Gaps = 21/135 (15%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------DIDQKI 56 +A + ++ T ++N+SN +T+G++ + +F++++ ++ + Sbjct: 13 IAQQTQIDTTSNNISNVNTIGYKKQRAEFADLMYQTMTYAGTSTSATSTSPTGIEVGLGV 72 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 A K++ G+F TG LD A+ G+ +F ++ P G TR+G FK+ +GS+V Sbjct: 73 RPTAIAKQFTQ---GNFKETGNSLDVAITGNGFFQIQLPDGTTGYTRNGSFKLDSEGSVV 129 Query: 116 SASGKYPVLDMASVP 130 ++ G Y +L ++P Sbjct: 130 NSDG-YRLLPELTIP 143 >gi|328948267|ref|YP_004365604.1| flagellar basal-body rod protein FlgG [Treponema succinifaciens DSM 2489] gi|328448591|gb|AEB14307.1| flagellar basal-body rod protein FlgG [Treponema succinifaciens DSM 2489] Length = 264 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 42/240 (17%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI----DQKISFVASG 62 + + T+++N+SN +T GF+ + +F +++ A ++ + Q S V G Sbjct: 16 QMNIDTISNNLSNVNTTGFKQHRAEFEDLLYQNVKLAGTPATEDTVTPVGHQMGSGVKVG 75 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 GS +TG + D A+ GD +F ++ G TRDG FKV G LV+A+G Sbjct: 76 ATQRIMTQGSLQATGVDTDVAVVGDGFFRVQQYDGSWAYTRDGSFKVDSTGQLVTANG-- 133 Query: 122 PVLDMASVP-IQIPQ--KDEIFNVGEKGEISQK--GKV----IATMGLYSVDMSQGFVRR 172 + +P I +P+ + E ++ + G ++ K G++ + + LY + G Sbjct: 134 ----LRVMPEIIMPEGFQLETLSISDGGRVNIKVNGELEPVEVGQLELYRFPNAVGL--- 186 Query: 173 ENSGIS----PNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI--HLTQKFNS 222 EN+G + N P+ G+ K FLE SN + + EM QMI +FNS Sbjct: 187 ENTGDNLYKVTNASGEPIAGRPGIDGMGITKHKFLEMSNVSVVNEMVQMIVAQRAYEFNS 246 >gi|300693338|ref|YP_003749311.1| flagellar hook protein flge [Ralstonia solanacearum PSI07] gi|299075375|emb|CBJ34670.1| flagellar hook protein FlgE [Ralstonia solanacearum PSI07] Length = 401 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F GL+ A + L + N++N +TVG++ +F +V VGA N I Q + Sbjct: 3 FQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDVT 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + + G+ TG LD A+ G ++ + S + TR+G+F+ +G ++SA Sbjct: 63 KVSQSFTQ---GNVTVTGNPLDIAINGTGFYRMVDASSGQVSYTRNGQFQTDKNGYIISA 119 Query: 118 SGK 120 +G+ Sbjct: 120 TGQ 122 >gi|329901230|ref|ZP_08272755.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] gi|327549162|gb|EGF33754.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] Length = 407 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 67/124 (54%), Gaps = 12/124 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKIS 57 F GL+ A + L +N++N+ TVGF++ + +F++V GA + I ++ Sbjct: 3 FQQGLSGLNAASKSLEVTGNNVANSSTVGFKSAQAQFADVYASSLTGGGASQVGIGTSVA 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 VA +++ G+ ++ LD A+ G +F L + I +R+G+F++ +G +V++ Sbjct: 63 TVA--QQFTQ---GNVTASNNPLDLAINGGGFFRLSTGGAITYSRNGQFQLDKNGGIVNS 117 Query: 118 SGKY 121 +G + Sbjct: 118 NGAH 121 >gi|300696913|ref|YP_003747574.1| flagellar hook protein FlgE [Ralstonia solanacearum CFBP2957] gi|299073637|emb|CBJ53157.1| flagellar hook protein FlgE [Ralstonia solanacearum CFBP2957] Length = 401 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F GL+ A + L + N++N +TVG++ +F +V VGA N I Q + Sbjct: 3 FQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDVT 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + + G+ TG LD A+ G ++ + S + TR+G+F+ +G ++SA Sbjct: 63 KVSQSFTQ---GNVTVTGNPLDIAINGTGFYRMVDASSGQVSYTRNGQFQTDKNGYIISA 119 Query: 118 SGK 120 +G+ Sbjct: 120 TGQ 122 >gi|260574401|ref|ZP_05842405.1| flagellar basal-body rod protein FlgG [Rhodobacter sp. SW2] gi|259023297|gb|EEW26589.1| flagellar basal-body rod protein FlgG [Rhodobacter sp. SW2] Length = 261 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVA 60 G+AAQ + R+ V++N++N T G+ + F+++ G + Q + + Sbjct: 10 GMAAQ---QMRVDVVSNNLANMSTTGYNARRADFADLHYQQLARPGTVSA---QDGTILP 63 Query: 61 SGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 +G + + G+ TG +LD A+EG + + P G TRDG K T Sbjct: 64 TGVQLGLGVRPAAVSMVMAQGTLAQTGGDLDLAIEGQGYLEVTLPSGASAYTRDGALKRT 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSV 163 DG +V++ G + I IP ++ GE+ + ++ + L Sbjct: 124 GDGLIVTSEGH-----QVAPGITIPADARSLSINADGEVYAYFVDQVQPSLLGQLNLVGF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +G F+ SG + I TP +D G T+++G+LE+S+ +++ E+ ++I Sbjct: 179 TNEKGLEAIGSNLFLESPASGAA--IVGTPGQDGLG-TLRQGYLEESSVDAVREVTELIK 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRGY 240 >gi|161367438|ref|YP_868965.2| flagellar basal body rod protein FlgF [Shewanella sp. ANA-3] Length = 247 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 35/221 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ A+N++N +T GF K+D+ Q S A G+ ++ Sbjct: 19 LALRANNLANANTDGF--------------KSDMAQARSMQAFGEGLPTRVFAMVETPSA 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G STG +LD A++GD WFA+++ G TR G G L + G PV+ Sbjct: 65 NFRSGPIKSTGRDLDVAIKGDGWFAVQAQDGSEAYTRSGSLSFDSTGLLHNDRGN-PVMG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMG-LYSVDMSQGFVRRENSGISP 179 A PI +P E + + G IS + + V+ +G L V+ + R G+ Sbjct: 124 DAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVVEEVGRLKLVNPGNAQMMRGEDGLFR 182 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P V V+ G +E SN N + EM +I L ++F Sbjct: 183 LVSGDPAPADPSVFVESGAVEGSNVNPVDEMVSLIDLQRQF 223 >gi|325288806|ref|YP_004264987.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964207|gb|ADY54986.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 257 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 26/252 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-----------ISF 58 A LA Q+ T+ N+ N T G+R K + ++ I Sbjct: 10 AGMLANNQQSDTIDQNIENLKTPGYRQASEKLQAFPAMLVERMEPSSTEPVVMERTPIGS 69 Query: 59 VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + +G + S G TG + D A+ +FA+ +P G TR G F + G L Sbjct: 70 LGTGVQIESVMYQDGPGMLRETGNQTDVAITARGYFAVSTPDGERYTRSGHFLLDSAGGL 129 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 + SG PVL IP E F + E G + K + L VD+ ++RE Sbjct: 130 RTPSG-CPVLGQNGPVGPIP---ENFEIREDGTMINKEDNMEVDRLRLVDIPTEALQREG 185 Query: 175 SGI----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + S + P + V +K+G++E+SN N ++ +M+ + + +++ ++ N Sbjct: 186 DTLLFSSSEGVVDIPAGE---VRLKQGYVEESNVNLNAQIVKMLEVVRSYSANQKVVQTN 242 Query: 231 EKSMLEAIRNIA 242 + + +A+ I Sbjct: 243 DSLLQKAVNEIG 254 >gi|121601827|ref|YP_989383.1| flagellar hook protein FlgE [Bartonella bacilliformis KC583] gi|120614004|gb|ABM44605.1| flagellar hook protein FlgE [Bartonella bacilliformis KC583] Length = 404 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 27/144 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M TS + G+ AQ +RLS +A+N++N TVG++ V+FS V G +K+ Sbjct: 7 MHTSVS-GMNAQ---GKRLSGIAENVANAGTVGYKRTNVQFSNYVTPSGDYAYVPGGVKS 62 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 + IS + +TG D + G+ +F +E G LTR G F Sbjct: 63 HVGHDISIYGPAR-----------ATGRPGDAMINGNGFFRVEDENGNEFLTRAGSFSRD 111 Query: 110 DDGSLVSASGKYPVLDMASVPIQI 133 DG L ++SG Y +L+ IQI Sbjct: 112 KDGYLRNSSGHY-LLNDEGQRIQI 134 >gi|290474974|ref|YP_003467858.1| flagellar basal body rod cell-distal protein [Xenorhabdus bovienii SS-2004] gi|289174291|emb|CBJ81081.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Xenorhabdus bovienii SS-2004] Length = 260 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA+ ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTERQPGAMSSEQTNLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F ++ P G TRDG F+ Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLAQTNNSNDVAIKGQGFFQIQMPDGTTGYTRDGSFQKDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+A G + V+ +P + +D I ++ +G+ + Q G++ T G Sbjct: 125 NGQLVTAGG-FQVVPAIIIPDNATKMSIARDGIVSINVQGQNAPQQVGQLTLTTFINESG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 L S+ EN + N P+E+ G+ + +G++E SN N E+ MI Sbjct: 184 LESIG--------ENLYLETNSSGVPVENAPGINGAGLLYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKF 220 + + + Sbjct: 236 VQRAY 240 >gi|15642194|ref|NP_231826.1| flagellar basal body rod protein FlgG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586257|ref|ZP_01676047.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 2740-80] gi|121726538|ref|ZP_01679787.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V52] gi|147674573|ref|YP_001217712.1| flagellar basal body rod protein FlgG [Vibrio cholerae O395] gi|153213600|ref|ZP_01948873.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 1587] gi|153817095|ref|ZP_01969762.1| flagellar basal-body rod protein FlgG [Vibrio cholerae NCTC 8457] gi|153820850|ref|ZP_01973517.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|153825330|ref|ZP_01977997.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-2] gi|153829351|ref|ZP_01982018.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 623-39] gi|183179567|ref|ZP_02957778.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-3] gi|227082319|ref|YP_002810870.1| flagellar basal-body rod protein FlgG [Vibrio cholerae M66-2] gi|229507728|ref|ZP_04397233.1| flagellar basal-body rod protein FlgG [Vibrio cholerae BX 330286] gi|229512077|ref|ZP_04401556.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|229513839|ref|ZP_04403301.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TMA 21] gi|229519213|ref|ZP_04408656.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC9] gi|229522144|ref|ZP_04411561.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TM 11079-80] gi|229524190|ref|ZP_04413595.1| flagellar basal-body rod protein FlgG [Vibrio cholerae bv. albensis VL426] gi|229528800|ref|ZP_04418190.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 12129(1)] gi|229607232|ref|YP_002877880.1| flagellar basal body rod protein FlgG [Vibrio cholerae MJ-1236] gi|254225803|ref|ZP_04919408.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V51] gi|254849324|ref|ZP_05238674.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MO10] gi|255747106|ref|ZP_05421051.1| flagellar basal-body rod protein FlgG [Vibrio cholera CIRS 101] gi|262161350|ref|ZP_06030460.1| flagellar basal-body rod protein FlgG [Vibrio cholerae INDRE 91/1] gi|262167779|ref|ZP_06035481.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC27] gi|262191687|ref|ZP_06049863.1| flagellar basal-body rod protein FlgG [Vibrio cholerae CT 5369-93] gi|297580841|ref|ZP_06942766.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC385] gi|298500427|ref|ZP_07010232.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MAK 757] gi|9656751|gb|AAF95340.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549523|gb|EAX59549.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 2740-80] gi|121630991|gb|EAX63370.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V52] gi|124115799|gb|EAY34619.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 1587] gi|125621709|gb|EAZ50038.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V51] gi|126512363|gb|EAZ74957.1| flagellar basal-body rod protein FlgG [Vibrio cholerae NCTC 8457] gi|126521642|gb|EAZ78865.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|146316456|gb|ABQ20995.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O395] gi|148875192|gb|EDL73327.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 623-39] gi|149741014|gb|EDM55083.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-2] gi|183012978|gb|EDT88278.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-3] gi|227010207|gb|ACP06419.1| flagellar basal-body rod protein FlgG [Vibrio cholerae M66-2] gi|227014091|gb|ACP10301.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O395] gi|229332574|gb|EEN98060.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 12129(1)] gi|229337771|gb|EEO02788.1| flagellar basal-body rod protein FlgG [Vibrio cholerae bv. albensis VL426] gi|229341069|gb|EEO06074.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TM 11079-80] gi|229343902|gb|EEO08877.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC9] gi|229349020|gb|EEO13977.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TMA 21] gi|229352042|gb|EEO16983.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|229355233|gb|EEO20154.1| flagellar basal-body rod protein FlgG [Vibrio cholerae BX 330286] gi|229369887|gb|ACQ60310.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MJ-1236] gi|254845029|gb|EET23443.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MO10] gi|255735508|gb|EET90908.1| flagellar basal-body rod protein FlgG [Vibrio cholera CIRS 101] gi|262023844|gb|EEY42543.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC27] gi|262028661|gb|EEY47315.1| flagellar basal-body rod protein FlgG [Vibrio cholerae INDRE 91/1] gi|262032426|gb|EEY50988.1| flagellar basal-body rod protein FlgG [Vibrio cholerae CT 5369-93] gi|297534667|gb|EFH73503.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC385] gi|297541120|gb|EFH77174.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MAK 757] gi|327484714|gb|AEA79121.1| Flagellar basal-body rod protein FlgG [Vibrio cholerae LMA3894-4] Length = 262 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 118/257 (45%), Gaps = 42/257 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ + ++T+++N++N T+GF+ + F ++ +I+Q Sbjct: 11 GLDAQ---QTNIATISNNLANASTIGFKKGRAVFEDL---FYQNINQPGAQSSQNTRLPS 64 Query: 56 -ISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + A K +++V G+ +T LD +EGD +F + P G I +R+G+F + D Sbjct: 65 GLMLGAGSKVVATQKVHTNGNVQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDD 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVD 164 +G++V++ Y + I IP+ +G GE+S Q +V+ + +VD Sbjct: 125 EGAIVTSGAGYRL----QPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQ--ITTVD 178 Query: 165 -MSQGFVRR--ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLT 217 ++ G + +N + P E + G+ +++ LE SN N E+ MI Sbjct: 179 FINPGGLEPVGQNLYLPTGASGEPQEGVPGLDGLGDIRQSMLETSNVNVTEELVNMIEAQ 238 Query: 218 QKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 239 RVYEMNSKVISAVDKMM 255 >gi|299068732|emb|CBJ39971.1| flagellar hook protein FlgE [Ralstonia solanacearum CMR15] Length = 401 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F GL+ A + L + N++N +TVG++ +F +V VGA N I Q + Sbjct: 3 FQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDVT 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + + G+ TG LD A+ G ++ + S + TR+G+F+ +G ++SA Sbjct: 63 KVSQSFTQ---GNVTVTGNPLDIAINGTGFYRMVDASSGQVSYTRNGQFQTDKNGYIISA 119 Query: 118 SGK 120 +G+ Sbjct: 120 TGQ 122 >gi|238919260|ref|YP_002932775.1| flagellar basal-body rod protein FlgF, [Edwardsiella ictaluri 93-146] gi|238868829|gb|ACR68540.1| flagellar basal-body rod protein FlgF, putative [Edwardsiella ictaluri 93-146] Length = 251 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 36/236 (15%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTE 79 + A+NM+N+ T GFR ++ V +D + + V + +G F TG Sbjct: 20 AVAANNMANSTTPGFRA-QLAAMRAVPVDGESLDTR-TLVTASTPMNDLSMGRFDYTGRP 77 Query: 80 LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE 138 LD AL+ D W L+ G TRDG +++ DG +++ G +PV+ + PI +P + + Sbjct: 78 LDVALQQDGWLELQMSNGTEAYTRDGNLQISPDG-MLTVEG-HPVMG-DNGPISVPDRAQ 134 Query: 139 IFNVGEKGEISQKG--------------KVIATMGLYSVDMSQGFVR-----RENSGISP 179 + + G I+ G K++ V G + G S Sbjct: 135 L-TIAADGTITALGAGDNPNATTQIGRLKLVKATASEVVHGDDGLFHLSAEAEQKRGASL 193 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 + PT V V G LE SN + M MI ++F + +D+NE+ Sbjct: 194 PLDPT-------VKVMPGVLEGSNVQPVEAMISMISNARRFEMQMKVIRSVDDNEQ 242 >gi|117612105|gb|ABK47559.1| flagellar basal-body rod protein FlgF [Shewanella sp. ANA-3] Length = 252 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 35/221 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ A+N++N +T GF K+D+ Q S A G+ ++ Sbjct: 24 LALRANNLANANTDGF--------------KSDMAQARSMQAFGEGLPTRVFAMVETPSA 69 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G STG +LD A++GD WFA+++ G TR G G L + G PV+ Sbjct: 70 NFRSGPIKSTGRDLDVAIKGDGWFAVQAQDGSEAYTRSGSLSFDSTGLLHNDRGN-PVMG 128 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMG-LYSVDMSQGFVRRENSGISP 179 A PI +P E + + G IS + + V+ +G L V+ + R G+ Sbjct: 129 DAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVVEEVGRLKLVNPGNAQMMRGEDGLFR 187 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P V V+ G +E SN N + EM +I L ++F Sbjct: 188 LVSGDPAPADPSVFVESGAVEGSNVNPVDEMVSLIDLQRQF 228 >gi|171321214|ref|ZP_02910184.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] gi|171093524|gb|EDT38694.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] Length = 234 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 38/232 (16%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK----EVGS 72 QR T A N+SN T G+R ++ F ++ + ND+ A G + + G Sbjct: 17 QRAETAARNLSNVATPGYRR-EIAFQDM---LANDVTP-----AGGGPPIHRLTDFSPGR 67 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 + TG D A++GD +F +++ G TR G F DG LV+ +G + P+Q Sbjct: 68 LVRTGDPFDLAIDGDGFFQVQTDSGPAYTRTGAFLRAADGRLVTRAGGW--------PLQ 119 Query: 133 IPQKDEI-----FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 D + + V G + G + + + + D R + +P Sbjct: 120 GAHGDIVVSLDGWRVDADGTVLDHGVPTSVIRVATFDAPSRLQRIADGLYAP-------R 172 Query: 188 DLSGV-----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 D G+ + +GF+E SN ++ +M ++I ++ + L+ + M Sbjct: 173 DTVGMRDAPTRLAQGFVETSNVSAADDMVRLIEAMRRVETGQKLVHAYDDLM 224 >gi|229096257|ref|ZP_04227230.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-29] gi|229115212|ref|ZP_04244622.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-3] gi|228668352|gb|EEL23784.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-3] gi|228687217|gb|EEL41122.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-29] Length = 267 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 47/252 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNVQITNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------------KGKVIATM 158 D L ++SG Y V+D+ + I+IP+ F V GEI + K VIA + Sbjct: 123 DRYLQTSSGAY-VMDVNNERIRIPENVNFF-VSNNGEIYREINEGTLQKPDIKRIVIAQL 180 Query: 159 GLYSVDMSQG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG-- 211 +VD V+REN + NI P + +G+ VK LE+SN + EM Sbjct: 181 QTKTVDAETNARLVQRENKSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADL 237 Query: 212 ----QMIHLTQK 219 +MI +Q+ Sbjct: 238 MSSQKMIQASQR 249 >gi|152990377|ref|YP_001356099.1| flagellar basal body and hook protein FlgE [Nitratiruptor sp. SB155-2] gi|151422238|dbj|BAF69742.1| flagellar basal body and hook protein FlgE [Nitratiruptor sp. SB155-2] Length = 533 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 14/131 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M SF G + A + L ++DN++N +T GF+ +V FS++V GA +N Sbjct: 1 MLQSFYTGNSGLNANKTWLGVISDNIANVNTNGFKQERVNFSDLVASSLTTYSSSGAPRN 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKV 108 +FVA + S+ GSF +T L AL+G+ +F +++P TR G F+V Sbjct: 61 KEIGGGAFVAGTIKDFSQ--GSFKNTNQPLSLALDGEGFFMVKNPSADLTYYTRAGDFRV 118 Query: 109 TDDGSLVSASG 119 +G +++ +G Sbjct: 119 DANGDVINPAG 129 >gi|56460252|ref|YP_155533.1| flagellar hook protein FlgE [Idiomarina loihiensis L2TR] gi|56179262|gb|AAV81984.1| Flagellar hook protein FlgE [Idiomarina loihiensis L2TR] Length = 449 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVASG 62 SF I L+ A ++ L A+N+SN T GF+ + +F++V +I N + K+ G Sbjct: 2 SFKIALSGINASQKDLDVTANNISNVKTSGFKQSRAEFADVYATSIFNAGNTKV-----G 56 Query: 63 KEYLSKEVGSFISTGT------ELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGS 113 L+ V S GT LD A+ G+ +FA R + TR G FK+ DD Sbjct: 57 DGVLTSSVAQQFSQGTLEFTENSLDMAISGNGFFATTDGLGSRDMTYTRSGAFKLNDDKF 116 Query: 114 LVSASGKY 121 +V G Y Sbjct: 117 IVDNQGNY 124 >gi|326796597|ref|YP_004314417.1| flagellar hook-basal body protein [Marinomonas mediterranea MMB-1] gi|326547361|gb|ADZ92581.1| flagellar hook-basal body protein [Marinomonas mediterranea MMB-1] Length = 565 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 9/123 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGA-IKNDIDQKISF 58 FN L+ A L +N++N DT GF+ +++F + V+G+ N I +S Sbjct: 3 FNTALSGIKASADYLGVTGNNIANADTTGFKKSRIEFGDLYNTNVIGSGSSNTIGSGVSV 62 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G++ TG LD A++G +F ++ TR G FK+ ++G+LV+ Sbjct: 63 NNVAQDF---SAGNYNDTGNNLDVAIDGSGFFVVDQGGVQTYTRAGDFKLDEEGNLVTND 119 Query: 119 GKY 121 G + Sbjct: 120 GGF 122 >gi|323137001|ref|ZP_08072081.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] gi|322397762|gb|EFY00284.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] Length = 417 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN + A L+ +++N++N+ TVG++ F V+ + +Q V++ Sbjct: 8 FNTSIMGMSAQSDALANISENIANSGTVGYKRATTHFLTVLSGFQGS-NQFGGGVSTRSR 66 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASGKY 121 Y G+ + TG+ D A+ G+ +F + + G LTR G F G LV+A+G Y Sbjct: 67 YDITGQGALMHTGSSTDMAIRGNGFFVVSDGAGGTFLTRAGSFVPDSSGRLVNAAGYY 124 >gi|83747654|ref|ZP_00944690.1| FlgE [Ralstonia solanacearum UW551] gi|207728346|ref|YP_002256740.1| flagellar hook protein flge [Ralstonia solanacearum MolK2] gi|207739737|ref|YP_002258130.1| flagellar hook protein flge [Ralstonia solanacearum IPO1609] gi|83725706|gb|EAP72848.1| FlgE [Ralstonia solanacearum UW551] gi|206591592|emb|CAQ57204.1| flagellar hook protein flge [Ralstonia solanacearum MolK2] gi|206593119|emb|CAQ60025.1| flagellar hook protein flge [Ralstonia solanacearum IPO1609] Length = 401 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F GL+ A + L + N++N +TVG++ +F +V VGA N I Q + Sbjct: 3 FQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDVT 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + + G+ TG LD A+ G ++ + S + TR+G+F+ +G ++SA Sbjct: 63 KVSQSFTQ---GNVTVTGNPLDIAINGTGFYRMVDTSSGQVSYTRNGQFQTDKNGYIISA 119 Query: 118 SGK 120 +G+ Sbjct: 120 TGQ 122 >gi|315497293|ref|YP_004086097.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] gi|315415305|gb|ADU11946.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] Length = 459 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 14/146 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++A A L+ +++N++N +T ++++ F+ V + + AS ++ Sbjct: 10 GVSALSANSTALAAISNNIANVNTTAYKSVSTSFAANVSSSGSSTYSSGGVSASTALSIT 69 Query: 68 KEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 E G+ +T + LD A++G +F + + G TRDG F V D+G LV++SG Y Sbjct: 70 -EAGALQTTTSSLDLAIDGSGFFVVSEGADGSGGSYYTRDGSFSVNDEGYLVNSSGYY-- 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS 149 +Q Q D NV +S Sbjct: 127 -------LQGWQADSSGNVTAASSVS 145 >gi|168699694|ref|ZP_02731971.1| flagellar basal body rod protein [Gemmata obscuriglobus UQM 2246] Length = 238 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 6/159 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--DIDQKISFVASG 62 ++ G A +A EQ+ T A N++++ T G+R + F + I + + I+ + Sbjct: 3 YSAGSALVIASEQQEVT-AHNLAHSTTPGYRERGLVFESLDRHIGHAEEPTGDITGARTV 61 Query: 63 KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + Y G TG D A+ E D +F L P G + TR+G F+V G LVS +G Sbjct: 62 QAYNDFRPGPIQQTGHPYDLAIGEADRFFVLNGPNGPLYTRNGCFRVDPQGRLVSQAGYA 121 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 D +V IP+ + G I+ G+ + T+ L Sbjct: 122 LQTDQGNV--TIPEGTSRVVIASDGSITADGQPLGTVRL 158 >gi|170735956|ref|YP_001777216.1| flagellar basal body FlaE domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818144|gb|ACA92726.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 414 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 16/144 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF+ + F+++ ++ ++ +I +AS + Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK--- 120 + + G+ ST + LD A+ G+ +F + S +RDG F +G++V A G+ Sbjct: 66 QNFGQ--GTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLM 123 Query: 121 -YP-----VLDMA-SVPIQIPQKD 137 Y V++ A +VP+Q P + Sbjct: 124 GYAAGAGGVINTAQTVPLQAPTSN 147 >gi|325111114|ref|YP_004272182.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] gi|324971382|gb|ADY62160.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] Length = 256 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 40/251 (15%) Query: 18 RLSTVADNMSNTDTVGFR------TIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV- 70 R +++N++N +T F+ ++ + +E+ G + +D+ + G +++ V Sbjct: 18 RQDVISNNIANANTSSFKRDLAIFAVRPQQAELDGDL-DDVPPPLQG-HPGAAVVAETVT 75 Query: 71 ----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G TG D AL G +F + + +L+R G + ++ LV PVLD Sbjct: 76 DFAQGPLQETGAAFDIALLGKGFFRVSDGQEELLSRSGSLTLNENSELVQTDTGLPVLDD 135 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 PI +P +I N GE G ++ +V Q FV + PN P L Sbjct: 136 KGDPIVVPPNTDI-NFGEDGLVTAVDRVTG----------QPFVLGRIDLVHPN-NPRGL 183 Query: 187 EDLS--------GVT-------VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 E + GV V++GFLE S + EM MI ++ F + LI + Sbjct: 184 EKVGDSLYRAAEGVVTAGPELRVRQGFLEQSGVRPITEMLAMIESSRAFEANMNLIQNQD 243 Query: 232 KSMLEAIRNIA 242 ++ + ++ + Sbjct: 244 NTLGQLLQAVG 254 >gi|266621944|ref|ZP_06114879.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] gi|288866378|gb|EFC98676.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] Length = 246 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 39/250 (15%) Query: 10 AAQLALEQR-LSTVADNMSNTDTVGFRT---IKVKFSEVVGAIKNDIDQKISFVASG--- 62 A+ + + QR L+ A+N++N T G+R+ +K F E + ++ + + + G Sbjct: 9 ASGVLMNQRALNISANNIANVKTSGYRSKRLVKTTFDE---QLVRQMNGQTTAIGGGSTI 65 Query: 63 ----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +E + G+ + TG D A+ GD F ++ LTR+G F +DG LV Sbjct: 66 SLAEREMTTHRQGALVDTGKNFDMAISGDGLFVIQGEDRQYLTRNGHFTQDEDGYLV-LK 124 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVG--------EKGEISQKGKVIATMGLYSVDMSQGFV 170 G V+ PIQ+ + F VG E GE+ Q V+ G Sbjct: 125 GVGQVMGDGG-PIQVEEGG--FRVGENGIIYDNENGELEQIQIVVPDNYDNLTFYDNGTY 181 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT---TLI 227 EN + P V +G LE+S N EM + + + + F S + T+I Sbjct: 182 GAENGVALTQVYP---------EVFQGKLEESGVNLNSEMTRAMEVQRAFQSCSRALTII 232 Query: 228 DE-NEKSMLE 236 D+ N+KS E Sbjct: 233 DQMNQKSASE 242 >gi|222530298|ref|YP_002574180.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor bescii DSM 6725] gi|222457145|gb|ACM61407.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor bescii DSM 6725] Length = 267 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 122/271 (45%), Gaps = 51/271 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G+ AQ + + +++N++N +T F+ K +F +++ + D VA + + Sbjct: 10 LGMKAQ---QTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRAD----VVAGDGKPV 62 Query: 67 SKEVGSFIS---------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTD- 110 S ++G ++ T LD A++G+ +F + +P G TRDG FKV++ Sbjct: 63 SLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVSNV 122 Query: 111 DGS--LVSASGKYPVLDMASVPIQIPQK-------DEIFNVGEK---GEISQKG------ 152 +G LV++ G YPVL I +P+ DE + K G+I G Sbjct: 123 EGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQDSGFKIKIV 181 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFLEDSNANSMYEM 210 + I GL +++G S S + P E++ G + +GFLE SN + EM Sbjct: 182 RFINPQGL----LAEGKNLYNVSAASGD--PMSEEEMEGQKSRILQGFLEMSNVQVVDEM 235 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++I + Q+ I + + ML N+ Sbjct: 236 VKLI-IAQRAYEINSKAIQTADDMLSMANNL 265 >gi|326796595|ref|YP_004314415.1| flagellar basal-body rod protein FlgG [Marinomonas mediterranea MMB-1] gi|326547359|gb|ADZ92579.1| flagellar basal-body rod protein FlgG [Marinomonas mediterranea MMB-1] Length = 261 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 34/247 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKN--- 50 MQT+ A++++LS +++N++N T GF+ + F ++ G + Sbjct: 1 MQTALWTAKTGLTAMDRQLSVISNNLANVSTTGFKKERAVFENLMYQTLKSPGGLSAQNT 60 Query: 51 ------DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRD 103 I + K + E G + T LD A++G +F + G TRD Sbjct: 61 ELPSGLQIGAGVRVTGMQKNF---EEGDYNVTDRNLDVAIQGAGFFQITRSDGTTAYTRD 117 Query: 104 GRFKVTDDGSLVSASGKY--PVLDMASVPIQIPQKDE-IFNVGEKGEISQK-------GK 153 G F++ +G +V +SG P + S + I D+ +V GE Q+ Sbjct: 118 GSFQLNSEGQMVDSSGNLLDPQISFDSDVVDITIGDDGTVSVLRAGETDQEEIGSITIAN 177 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 I GLY + G + E S I P E+ G + +G LE SN NS+ E+ M Sbjct: 178 FINPAGLYFLG---GNLYEETSASGAPIVGVPGEEGLG-ELGQGMLEASNVNSVEELVNM 233 Query: 214 IHLTQKF 220 I + + Sbjct: 234 ITTQRAY 240 >gi|260222467|emb|CBA32060.1| hypothetical protein Csp_D30230 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 188 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 10/129 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKISFV 59 SF GL+ + + L + +N++N +TVG + + +F+ ++ G ++ I V Sbjct: 2 SFQTGLSGLNSSSKNLDVIGNNIANANTVGMKASRTEFAALIATQLGPAGGNLTPGIG-V 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSAS 118 + G G+ TG LD A+ G+ +F + P + TRDG+FK+ D G+L++ Sbjct: 61 SVGTVAQQFTQGNISITGNNLDVAINGNGFFQVTMPDQSRAYTRDGQFKLDDVGNLITNG 120 Query: 119 GK----YPV 123 G YP Sbjct: 121 GANVMGYPT 129 >gi|89075495|ref|ZP_01161906.1| flagellar hook protein [Photobacterium sp. SKA34] gi|89048767|gb|EAR54338.1| flagellar hook protein [Photobacterium sp. SKA34] Length = 467 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 25/174 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S NI L+ A ++ L+T ++N++N +T GF+ + +F +V N I G Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDV---YSNSIFSNAKTTTGGG 58 Query: 64 EYLSK-----EVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTDDGSL 114 S GS I T LD + G +FA+ P LTR+G F + ++ L Sbjct: 59 VQTSTVAQQFHEGSSIYTNNPLDLRVSGSGFFAVADNKNEPANNNLTRNGAFHLNNENEL 118 Query: 115 VSASGK----YPVLD----MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 V++ GK YPV +AS + + D++F G+ ++ G + ++ L Sbjct: 119 VNSEGKFLLGYPVNKDSNTVASYEAKSMKIDDVF-----GQPTKSGTIKVSLNL 167 >gi|294084436|ref|YP_003551194.1| flagellar hook protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664009|gb|ADE39110.1| Flagellar hook protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 269 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 73/144 (50%), Gaps = 15/144 (10%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQKISFVASGKEYLSK 68 A + + +++N++N T GF+ +F ++ G + + F AS + + Sbjct: 11 AANKEIGVISNNIANASTNGFKRSSAQFQDIYGIAGEKRAAAQVGKGTVFDASRRNHAQ- 69 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASGKYPVLD 125 G+F ++G+ELD A+ G+ F + P + TRDG ++ ++G +V+ G + ++ Sbjct: 70 --GAFKTSGSELDLAVAGEGMFIVAPPNAGNELRYTRDGSMRLDENGFIVNNEGHF-LIG 126 Query: 126 MASVPIQIPQKDEIFNVGEKGEIS 149 + P+++P + N E G+++ Sbjct: 127 LDGAPLRLPLRR---NPAEDGDVA 147 >gi|319944134|ref|ZP_08018412.1| flagellar basal-body rod protein FlgF [Lautropia mirabilis ATCC 51599] gi|319742628|gb|EFV95037.1| flagellar basal-body rod protein FlgF [Lautropia mirabilis ATCC 51599] Length = 245 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 29/243 (11%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 AL +R ++ N++N T GFR + V + ++ V + + K G Sbjct: 14 ALMERQDALSHNLANASTDGFRADLMTARAVPIREEGTATTRVFNVETSTGFDGKS-GPI 72 Query: 74 ISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG LD A+ + WFA+++ G TRDG V + G+L + G+ + D PI Sbjct: 73 RQTGNPLDLAIRDNGWFAVQAADGSEAYTRDGGLVVDEQGNLRTRRGQTVLGDGG--PIS 130 Query: 133 IPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQ------GFVRRENSGISPNI 181 +P ++ V + G + QK + L DM++ G +R + G Sbjct: 131 VPAGADV-QVADDGTVMVQVGRQKPSQAGKLKLVDPDMAELKKGDDGLMRMKEGG----- 184 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI-----DENEKSMLE 236 P+ D V V +G +E SN N + M MI + ++F L+ +E S + Sbjct: 185 -EAPVSD--SVRVVQGAVEGSNVNVVESMVGMIEVQRQFEMQMKLLQTAESNEQRASQIL 241 Query: 237 AIR 239 +IR Sbjct: 242 SIR 244 >gi|315124199|ref|YP_004066203.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017921|gb|ADT66014.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 270 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + L Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLA 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|312794499|ref|YP_004027422.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876700|ref|ZP_07736680.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor lactoaceticus 6A] gi|311796540|gb|EFR12889.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor lactoaceticus 6A] gi|312181639|gb|ADQ41809.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor kristjanssonii 177R1B] Length = 267 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 122/271 (45%), Gaps = 51/271 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G+ AQ + + +++N++N +T F+ K +F +++ + D VA + + Sbjct: 10 LGMKAQ---QTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRAD----VVAGDGKPV 62 Query: 67 SKEVGSFIS---------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTD- 110 S ++G ++ T LD A++G+ +F + +P G TRDG FKV++ Sbjct: 63 SLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVSNV 122 Query: 111 DGS--LVSASGKYPVLDMASVPIQIPQK-------DEIFNVGEK---GEISQKG------ 152 +G LV++ G YPVL I +P+ DE + K G+I G Sbjct: 123 EGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQDSGLKIKIV 181 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFLEDSNANSMYEM 210 + I GL +++G S S + P E++ G + +GFLE SN + EM Sbjct: 182 RFINPQGL----LAEGKNLYNVSAASGD--PVSEEEIEGQKSRILQGFLEMSNVQVVDEM 235 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++I + Q+ I + + ML N+ Sbjct: 236 VKLI-IAQRAYEINSKAIQTADDMLSMANNL 265 >gi|253998486|ref|YP_003050549.1| flagellar basal-body rod protein FlgG [Methylovorus sp. SIP3-4] gi|313200561|ref|YP_004039219.1| flagellar basal-body rod protein flgg [Methylovorus sp. MP688] gi|253985165|gb|ACT50022.1| flagellar basal-body rod protein FlgG [Methylovorus sp. SIP3-4] gi|312439877|gb|ADQ83983.1| flagellar basal-body rod protein FlgG [Methylovorus sp. MP688] Length = 260 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + ++ +A+N++N T GF+ + F +++ GA + Q S + Sbjct: 11 GLDAQ---QTQMDVIANNLANVSTNGFKRSRAVFEDLLYQNIRQPGAQSSQQTQLPSGMQ 67 Query: 61 SG---KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G K ++ + G+ T D A+ G+ +F + P G TRDG F+V + G Sbjct: 68 LGTGVKPVATERIFSQGNLQQTENAKDLAINGEGFFQVLLPDGSTAYTRDGSFQVDNQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDM------- 165 +V+ASG Y + I IP + VG G +S +AT + ++ + Sbjct: 128 MVTASG-YTI----QPAITIPANAQSITVGRDGTVSVTLPNSVATTQIGTIQLATFINPA 182 Query: 166 ---SQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 S+G +V SG + TP + +GV + +G++E SN N + E+ MI TQ+ Sbjct: 183 GLQSKGENLYVETSASGTAST--NTPGANGAGV-LNQGYVETSNVNVVEELVSMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAITTSDQMLQRLSQL 260 >gi|75675314|ref|YP_317735.1| flagellar basal body rod protein FlgG [Nitrobacter winogradskyi Nb-255] gi|74420184|gb|ABA04383.1| Protein of unknown function DUF1078 [Nitrobacter winogradskyi Nb-255] Length = 262 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 29/160 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGA----------IKN 50 G+AAQ E + +++N++N T G++ + F ++ VGA + Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASTQGTIMPVGI 66 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 D+ + V + ++ +S+ G+ TG +LD A+ G+ +F ++ P G TRDG F++ Sbjct: 67 DLGGGVKTVGTPRQ-MSQ--GTLSQTGNDLDIAIRGEGFFKIQMPDGTFQYTRDGTFQMD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 + G +V+A G PV I IPQ + +G++S Sbjct: 124 NMGRIVNAQGN-PV----QPTITIPQNSAGITINAQGQVS 158 >gi|325291939|ref|YP_004277803.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3] gi|325059792|gb|ADY63483.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3] Length = 262 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 43/239 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFVASGK 63 A + L +A+N++N +T G++ + +F++++ + N +Q I + + G Sbjct: 13 AQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQAIVPEGANIGLGV 72 Query: 64 EYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSAS 118 + + G+ I TG +LD A+ G WF +E+ G L +R G F DG+LV+ Sbjct: 73 QTSAVRNIHTQGNLIETGNKLDVAIIGQGWFQIEAADGSTLYSRAGAFNKNADGNLVTVD 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G Y V+ ++P + I++ G+V A +G + G + N Sbjct: 133 G-YNVIPNINIPTD----------AQDITITRTGQVTARIGNAADFTELGQLTIANFANE 181 Query: 179 PNIPP--------TPL---------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P TP +D S +K+ +LE SN +++ E+ +I + + Sbjct: 182 AGLKPLGDNLFSQTPASGAAVIGVPDDPSYGYIKQSYLEGSNVDAVKEITDLITAQRAY 240 >gi|300114798|ref|YP_003761373.1| flagellar basal-body rod protein FlgF [Nitrosococcus watsonii C-113] gi|299540735|gb|ADJ29052.1| flagellar basal-body rod protein FlgF [Nitrosococcus watsonii C-113] Length = 247 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 23/171 (13%) Query: 71 GSFISTGTELDFALEGDA-WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL-DMA 127 G STG ELD A++G+ W A+ SP G TR G K+T +G L + +G +PVL + Sbjct: 69 GPLQSTGRELDVAVQGEGGWLAVRSPSGGEAYTRAGNLKITSNGILTTGAG-HPVLGEGG 127 Query: 128 SVPIQIPQKDEI-----FNVGEKGEISQKGKVIATMGLYSVDMSQ------GFVRRENSG 176 ++ I QK EI ++ G+ + V+ + L + + Q G + N G Sbjct: 128 TIAIPPAQKIEIGADGTLSIRPLGQAANTLVVLDRIKLVNPPLDQLQKDEEGLMTMANGG 187 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 +P D S V++ G LE SNA+ + + +MI L +++ T ++ Sbjct: 188 QAP-------ADAS-VSLVSGKLEASNASGVDALVEMIALARQYEMQTKMM 230 >gi|90579909|ref|ZP_01235717.1| flagellar hook protein [Vibrio angustum S14] gi|90438794|gb|EAS63977.1| flagellar hook protein [Vibrio angustum S14] Length = 467 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 16/133 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S NI L+ A ++ L+T ++N++N +T GF+ + +F +V N I G Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDV---YSNSIFSNAKTTTGGG 58 Query: 64 EYLSK-----EVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTDDGSL 114 S GS I T LD + G +FA+ P LTR+G F + ++ L Sbjct: 59 VQTSTVAQQFHEGSSIYTNNPLDLRVSGSGFFAVADNKNEPANNNLTRNGAFHLNNENEL 118 Query: 115 VSASGK----YPV 123 V++ GK YPV Sbjct: 119 VNSEGKFLLGYPV 131 >gi|300817269|ref|ZP_07097487.1| flagellar basal body rod protein FlgF [Escherichia coli MS 107-1] gi|307313518|ref|ZP_07593139.1| fagellar hook-basal body protein [Escherichia coli W] gi|300530245|gb|EFK51307.1| flagellar basal body rod protein FlgF [Escherichia coli MS 107-1] gi|306906686|gb|EFN37197.1| fagellar hook-basal body protein [Escherichia coli W] gi|315059543|gb|ADT73870.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli W] gi|323379898|gb|ADX52166.1| fagellar hook-basal body protein [Escherichia coli KO11] Length = 245 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR +++ A N K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFR------ADMAMATNN----KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|157376214|ref|YP_001474814.1| flagellar basal body rod protein FlgG [Shewanella sediminis HAW-EB3] gi|157318588|gb|ABV37686.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] Length = 262 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + +S +++N++N TVG++ + F ++ V A + ++ Sbjct: 11 GLDAQ---QTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ ++T +D +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKVFTQGNMLTTDNSMDLMVEGPGFFEIQLPDGTAAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y V I IP+ V +GE+S K A + F+ Sbjct: 128 IVTPGSGYVV----QPAITIPENATGITVSAEGEVSVKTPGTAESQVVGQLSMTDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|88799021|ref|ZP_01114602.1| Flagellar hook protein FlgE [Reinekea sp. MED297] gi|88778248|gb|EAR09442.1| Flagellar hook protein FlgE [Reinekea sp. MED297] Length = 1472 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 9/123 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 SF GL+ A + L +N++N T GF+ + +F + ++G ++ I ++ Sbjct: 2 SFGSGLSGVAAANKDLKITGNNIANASTTGFKASRAEFGDAYTTSILGMGQDPIGSGVNV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 G+++ E G+ T + LD A++G+ +F E P + TR G F + DG +VS Sbjct: 62 NNVGQKF---EQGNISQTNSVLDLAIDGNGFFVTEYPNNSVTYTRSGIFGIDKDGYIVSN 118 Query: 118 SGK 120 G Sbjct: 119 QGA 121 >gi|292492364|ref|YP_003527803.1| flagellar basal-body rod protein FlgF [Nitrosococcus halophilus Nc4] gi|291580959|gb|ADE15416.1| flagellar basal-body rod protein FlgF [Nitrosococcus halophilus Nc4] Length = 246 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 26/177 (14%) Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 +G+ STG ELD A++G+ A+++ G TR G K++ +G L + +G+ PVL Sbjct: 68 LGALQSTGRELDVAVQGEGLIAVQAFDGTEAYTRAGNLKISSNGILTTGAGQ-PVLGEGG 126 Query: 129 VPIQIPQKDEIFNVGEKGEIS-----QKGKVIATM---GLYSVDMSQ------GFVRREN 174 P+ +P E +G G IS Q+ +A + L + ++Q G +R Sbjct: 127 -PVAVPPA-ETVEIGTDGTISIRPLGQEANTLAVLDRIKLVNPPLAQLKKGEDGLLRLAE 184 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 ++P + V++ G LE SN N + M +MI L +++ ++ E Sbjct: 185 GAVAPA--------EASVSLASGMLEASNVNGVDAMVEMIALARQYEMQVKMMQAAE 233 >gi|83646788|ref|YP_435223.1| flagellar basal body rod protein [Hahella chejuensis KCTC 2396] gi|83634831|gb|ABC30798.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 254 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 34/244 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVASGKEY----L 66 A ++++ T+++NM+N +TV ++ +V F ++V A + I V G + + Sbjct: 14 AGQKQIETISNNMANLNTVAYKKSRVAFGDLVSRQPAASAAEGKGIGSVGMGTKVAEVSM 73 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLD 125 + G +T +LD A+ GD +F + G TR+G K+ +DG L + +G Sbjct: 74 QFDSGDLKATENQLDLAIRGDGFFEVLLENGEYGYTRNGALKIDEDGYLSTLTGL----- 128 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ----GFVRR---ENSGIS 178 S IQIP K +IS G V +G +++ + FV E++G Sbjct: 129 RLSDQIQIPPD------ASKMQISTDGVVKVLIGEDVLEVGEIQLAKFVNDQALESAGQG 182 Query: 179 PNIPP----TPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 IP PL +GV +++GFLE SN + + E+ +++ + + + + +I Sbjct: 183 LYIPADDAGAPLYSQAGVNGLGMIQQGFLESSNVDLVKELVELVTAQRGYQANSHVIRAA 242 Query: 231 EKSM 234 ++ M Sbjct: 243 DEIM 246 >gi|238752866|ref|ZP_04614331.1| Lateral flagellar hook protein (FlgE-like) [Yersinia rohdei ATCC 43380] gi|238708905|gb|EEQ01158.1| Lateral flagellar hook protein (FlgE-like) [Yersinia rohdei ATCC 43380] Length = 411 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A+ ++LST+++N++N+ T GF+ + +F+ + Q + SG Sbjct: 2 SFSIANTGLSAVTEQLSTISNNIANSATKGFKASRTEFASMYAQ-----SQPLGVAVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--- 119 + GS TG +D A+ G+ +F +++ G TR G F G LV+ SG Sbjct: 57 SQSINKDGSIDRTGNAMDLAIAGNGFFVVKNSNGDEAYTRAGMFTSDKSGMLVNGSGMKL 116 Query: 120 -KYPV 123 YPV Sbjct: 117 QGYPV 121 >gi|226944494|ref|YP_002799567.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] gi|226719421|gb|ACO78592.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] Length = 260 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 35/245 (14%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF---VASGKEYLS 67 ++ +A+N++N T GF+ + F +++ GA N K+ + +G ++ Sbjct: 18 QMDVIANNLANVATNGFKRTRAVFEDLLYQNLRQPGA-DNTTQTKLPSGLQIGTGVRPVA 76 Query: 68 KE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 E G+ T D A+ G +F +E P G TRDG F++ ++G +V++SG Y Sbjct: 77 TERLHSQGNLQGTENSNDLAINGKGFFQVELPDGTTAYTRDGSFQLDENGQMVTSSG-YL 135 Query: 123 VLDMASVP-----IQIPQKDEIFNVGEKG--EISQKGKV-----IATMGLYSVDMSQGFV 170 ++ ++P + + Q D I +V + G + +Q G++ I GL SV + Sbjct: 136 LMGGITIPENALSVTVSQ-DGIVSVTQPGNAQANQVGQLNLALFINPAGLQSVGENLYLE 194 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + NIP T + +G++E SN N + EM MI TQ+ I + E Sbjct: 195 TASSGAPNENIPGTN----GAGRLYQGYVETSNVNVVEEMVSMIQ-TQRAYEINSKAVET 249 Query: 231 EKSML 235 ML Sbjct: 250 SDEML 254 >gi|254461663|ref|ZP_05075079.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium HTCC2083] gi|206678252|gb|EDZ42739.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium HTCC2083] Length = 262 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + R+ +A+N+SN +TVGF++ +V F ++ +K + S Sbjct: 12 GLNAQ---QTRMQVIANNLSNLNTVGFKSDRVNFESLLYQVKRGGGDQTSEGTELTSALA 68 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ + G ++T D A++G +F + P G + TR+G F + +G+ Sbjct: 69 LGTGVRAVNTQKLYSQGGMVNTDNSFDLAIDGQGFFQVLIPDGRVGYTRNGSFSRSAEGA 128 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQ 167 L +ASG + I+IP NV + G +S + + + L S + Sbjct: 129 LTTASGY-----VVQPEIRIPDDVVEVNVSQDGIVSVRSAAQKEPQEVGQLTLASFANPR 183 Query: 168 G-------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G F+ + + P + + + + +G LE SN N + ++ +MI + + Sbjct: 184 GLQPVGESFLVQTAASGDPTVASPQAQGIGKLV--QGSLESSNVNVVQQLVEMIETQRAY 241 >gi|90411007|ref|ZP_01219021.1| putative polar flagellar FlgG [Photobacterium profundum 3TCK] gi|90328220|gb|EAS44531.1| putative polar flagellar FlgG [Photobacterium profundum 3TCK] Length = 262 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 GL AQ + +ST+++N++N T+GF+ + F ++ + ++ + Sbjct: 11 GLDAQ---QTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQDTELPSGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T +D +EG+ +F + P G I TR+G+F + DG Sbjct: 68 LGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGEGFFQVLLPDGNIGYTRNGQFTINGDGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +V+ Y V I IP+ VG GE+S + Sbjct: 128 MVTTGSGYVV----QPEIAIPEDAVGITVGNDGEVSAR 161 >gi|127512281|ref|YP_001093478.1| flagellar basal body rod protein FlgG [Shewanella loihica PV-4] gi|126637576|gb|ABO23219.1| flagellar basal-body rod protein FlgG [Shewanella loihica PV-4] Length = 262 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 32/233 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + +S +++N++N TVG++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQ 167 +V+ Y VL A I IP V +GE+S K +V+ + + Sbjct: 128 IVTPGSGY-VLQPA---ITIPDDATSITVSAEGEVSVKTPGAAENQVVGQLSMSDFINPS 183 Query: 168 GF-VRRENSGISPNIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G +N + TP++ L G+ +++G LE SN N E+ +I Sbjct: 184 GLDPMGQNLYLETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|195940720|ref|ZP_03086102.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. EC4024] gi|295096223|emb|CBK85313.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 260 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D I +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-TPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|87119676|ref|ZP_01075573.1| hypothetical protein MED121_07045 [Marinomonas sp. MED121] gi|86165152|gb|EAQ66420.1| hypothetical protein MED121_07045 [Marinomonas sp. MED121] Length = 565 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKND-IDQKISF 58 FN L+ A LS DN++N+DT GF+ +++F + VVGA N+ I +S Sbjct: 3 FNTALSGIKASADALSVTGDNIANSDTTGFKQSRIEFGDLYNTSVVGAGSNNTIGSGVSV 62 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + + G+ T LD A++G +F L TR G FK+ DG LV+ Sbjct: 63 NNIAQAF---SAGNIAYTDNNLDLAVDGTGFFVLNLGGTQAYTRAGDFKLDADGFLVTND 119 Query: 119 G 119 G Sbjct: 120 G 120 >gi|186895116|ref|YP_001872228.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] gi|186698142|gb|ACC88771.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] Length = 260 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+A G + V ++P +D I +V +G+ + Q G++ T+ G Sbjct: 125 NGQLVTAGG-FQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTIFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L SV + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LESV--GENLYQETASSGAPN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLAQL 260 >gi|167835111|ref|ZP_02461994.1| flagellar hook protein FlgE [Burkholderia thailandensis MSMB43] Length = 413 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +TVGF+ +FS+ V A+ N I + +AS Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIG-TMLASV 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 ++ S+ G+ S+ + L+ A+ G+ +F + + + +RDG F+ +G +V++ G Sbjct: 65 QQQFSQ--GTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLSL 122 Query: 120 ------KYPVLDMA-SVPIQIPQKD 137 K V++ A +VP+Q P + Sbjct: 123 MGYQADKNGVINTAQTVPLQAPTNN 147 >gi|311694363|gb|ADP97236.1| flagellar basal-body rod protein FlgG [marine bacterium HP15] Length = 262 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 28/159 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GL+AQ + +ST+++N++N +T GF+ + F +++ I Sbjct: 11 GLSAQ---DTNMSTISNNLANVNTTGFKRDRAVFQDLLYQINRQPGGLTTQNSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + + V + K++ G+ T LD A+ G + ++ P G I TRDG+F++ Sbjct: 68 LGTGVRVVGTAKQF---SQGNLQITEQPLDMAINGRGFLQVQLPDGQIAYTRDGQFQLNA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 DG +V+ G YP L+ A I +P+ +G+ G ++ Sbjct: 125 DGDVVNPDG-YP-LEPA---INVPENATNITIGKDGTVT 158 >gi|311280016|ref|YP_003942247.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] gi|308749211|gb|ADO48963.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] Length = 251 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 22/229 (9%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTE 79 + A N++NT T GFR ++ V + + + + VA G T Sbjct: 20 AVTASNLANTSTPGFRA-QLTALRAVPVVGQSVPTR-TLVAGSTPGADMTPGQLDYTARP 77 Query: 80 LDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE 138 LD AL+ D W A+++ G TR+G +VT G L PV+ A PI +P+ E Sbjct: 78 LDVALQQDGWLAVQTADGSEGYTRNGNIQVTPTGQLTIQGN--PVIGEAG-PIAVPEGSE 134 Query: 139 IFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGI-----SPNIPPTP-L 186 + + G +S IA +G L V + V R + G+ + P L Sbjct: 135 V-TIASDGTVSALNPGDPANTIAPVGRLKMVKATNTEVARGDDGMFRLTAAAQATRGPVL 193 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 + V ++ G LE SN ++ M MI ++F + + +D NE+ Sbjct: 194 QADQSVRLQSGVLEGSNVKAVAAMADMISSARRFEMQMKVISSVDTNEQ 242 >gi|291277389|ref|YP_003517161.1| putative flagellar basal-body rod protein [Helicobacter mustelae 12198] gi|290964583|emb|CBG40436.1| putative flagellar basal-body rod protein [Helicobacter mustelae 12198] Length = 289 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 24/170 (14%) Query: 65 YLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y + +G+ + T LDFAL + + +FA+++P+G+ TRDG F V +DG L + G Y V Sbjct: 94 YSDQSLGAMMQTDNPLDFALSKENLYFAIQTPQGVRYTRDGSFVVGEDGMLSTKEG-YHV 152 Query: 124 LDMASVP----IQIPQKDEI---------FNVGEKGEI--SQKGKVIATMGLYSVDMSQG 168 L + I I + +I F V + + +++ IA + ++ Sbjct: 153 LSRTGLENEEGIAINVQSQIEADKNGNIYFRVSDNEAVGEAEQNNAIAVVSF----VNPR 208 Query: 169 FVRRENSGI--SPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 +++E + P + ++L+ +V++ FLE SN N++ EM +I Sbjct: 209 LLKKEGKNLYSYPEDKKSDRQNLATTESVRQSFLEKSNVNAVIEMTNLIE 258 >gi|261211320|ref|ZP_05925608.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC341] gi|260839275|gb|EEX65901.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC341] Length = 262 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 54/263 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ + ++T+++N++N T+GF+ + F ++ +I+Q Sbjct: 11 GLDAQ---QTNITTISNNLANASTIGFKKGRAVFEDL---FYQNINQPGAQSSQNTRLPS 64 Query: 56 -ISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + A K +++V G+ +T LD +EGD +F + P G I +R+G+F + D Sbjct: 65 GLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDD 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVD 164 +G++V++ Y + I IP+ +G GE+S Q +V+ + +VD Sbjct: 125 EGAIVTSGSGYRL----QPEIIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQ--ITTVD 178 Query: 165 MSQGFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMG 211 F+ G+ P N+ PT P E + G+ V++ LE SN N E+ Sbjct: 179 ----FINP--GGLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELV 232 Query: 212 QMIHLTQKFNSITTLIDENEKSM 234 MI + + + +I +K M Sbjct: 233 NMIEAQRVYEMNSKVISAVDKMM 255 >gi|152975165|ref|YP_001374682.1| flagellar hook protein FlgE [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023917|gb|ABS21687.1| protein of unknown function DUF1078 domain protein [Bacillus cytotoxicus NVH 391-98] Length = 467 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 35/185 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKND---- 51 M S ++ A++ LS ++N++N TVG++ K F ++ VGA +D Sbjct: 1 MIKSLYTSISGMSAMQNALSVTSNNIANAQTVGYKKQKAVFDDLLYNNTVGAKGDDTKAG 60 Query: 52 -----IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDG 104 I + F + +Y GS TG A+EG+ +F + +G + TR G Sbjct: 61 TNPKSIGNGVKFSGTSTDY---NGGSITMTGINGQVAIEGNGFFVVGDSQGNGVQYTRKG 117 Query: 105 RFKVTDDGSLVSASGKY-----------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 F +++ +V+ G+Y P + PI IP I GE+S KG Sbjct: 118 TFGKSENNYIVNGEGQYVLAYKLDEDGKPDTSHPAGPISIPLGSAI-----DGEVSSKGS 172 Query: 154 VIATM 158 +I + Sbjct: 173 LIGNL 177 >gi|251779966|ref|ZP_04822886.1| flagellar hook-basal body complex protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084281|gb|EES50171.1| flagellar hook-basal body complex protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 257 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 9/177 (5%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV----LDM 126 G+F +T + DF ++G +FA++ + TR G FK+ G L++ +G+Y + Sbjct: 84 GAFKATDSYTDFGIDGRGFFAVQRGNERLFTRSGDFKIDQQGYLITGNGEYVLGRNNATG 143 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 A PI + KDE G S G+ +T L + D + + E G + P+ Sbjct: 144 AEEPIYVG-KDEFSLDGNNKLQSATGE--STYTLLTADF-EDYKSLEKLGDNYYSANNPI 199 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + V V++G LE SN N E+ +++ + ++F + + ++++ +A I S Sbjct: 200 YN-AVVNVRQGVLETSNVNPTEELVKLMEIKRQFETNQKFVSMQDETVQKAANEIGS 255 >gi|84502379|ref|ZP_01000515.1| flagellar basal body rod protein FlgG [Oceanicola batsensis HTCC2597] gi|84389191|gb|EAQ01988.1| flagellar basal body rod protein FlgG [Oceanicola batsensis HTCC2597] Length = 261 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 24/161 (14%) Query: 7 IGLAA--QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND------ 51 +G+AA +A + + +++N++N T GF++ + F +++ GA +D Sbjct: 4 LGIAATGMMAQQTNVDVISNNIANASTTGFKSARASFQDLLYENIEREGAPTSDQGTYLP 63 Query: 52 --IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 ID + +G L+ + G T + D A+EG +F + P G TRDG ++ Sbjct: 64 VGIDVGLGVRTAGTVRLNTQ-GGLTQTENQTDLAIEGRGYFVVNMPDGNAAYTRDGSLRL 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +G +V+ G Y V + I +PQ +GE G +S Sbjct: 123 NAEGQIVTQQG-YEV----NPGIVVPQDTTRVEIGETGIVS 158 >gi|254248705|ref|ZP_04942025.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|124875206|gb|EAY65196.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] Length = 414 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 16/147 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VA 60 + GL+ L + +N++N +TVGF+ + F+++ ++ ++ +I +A Sbjct: 3 YQQGLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S ++ + G+ ST + LD A+ G+ +F + S +RDG F +G++V A G+ Sbjct: 63 SVQQNFGQ--GTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGR 120 Query: 121 ----YP-----VLDMA-SVPIQIPQKD 137 Y V++ A +VP+Q P + Sbjct: 121 NLMGYAAGAGGVINTAQTVPLQAPTSN 147 >gi|227328340|ref|ZP_03832364.1| flagellar basal body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253688970|ref|YP_003018160.1| flagellar basal-body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755548|gb|ACT13624.1| flagellar basal-body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 260 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + + +++N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLNAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQTMLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G +S E G+F TG D A++G +F ++ P G TRDG F++ +G Sbjct: 68 LGTGVRPVSTERIHTQGTFSETGNSKDVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----GLYS 162 LV++SG Y V +VP + +D I +V +G+ + Q G++ T GL S Sbjct: 128 LVTSSG-YQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIGQLTLTTFINDSGLES 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 M + S +PN P + +G+ ++ ++E SN N E+ MI TQ+ Sbjct: 187 --MGENLYLETASSGAPN-ETNPGLNGAGLLYQK-YVETSNVNVAEELVSMIQ-TQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + + ML+ + + Sbjct: 242 INSKAISSSDQMLQKLTQL 260 >gi|91792666|ref|YP_562317.1| flagellar basal body rod protein FlgG [Shewanella denitrificans OS217] gi|91714668|gb|ABE54594.1| Flagellar basal-body rod FlgG [Shewanella denitrificans OS217] Length = 262 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---IDQKIS 57 GL AQ + +S +++N++N T+G++ + F +++ G I D + ++ Sbjct: 11 GLDAQ---QTDISVISNNVANASTIGYKKSRAVFEDLLYQTVNQAGGISADNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFSQGNMLTTDNSLDLMIEGPGFFEVQLPDGTPAYTRNGQFSLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y VL A I IP+ V GE+S K A + F+ Sbjct: 128 IVTPGSGY-VLQPA---ITIPENATGITVSAGGEVSVKIPGTAESQVIGQITMTDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPLGQNLYTETGASGTPIQGTASLDGLGAIRQGALETSNVNVTEELVNLIQ 236 >gi|325295399|ref|YP_004281913.1| flagellar basal-body rod protein FlgG [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065847|gb|ADY73854.1| flagellar basal-body rod protein FlgG [Desulfurobacterium thermolithotrophum DSM 11699] Length = 266 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 35/235 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + L ++ N++N +TVGF+ + F +++ G + ++ ++ S + Sbjct: 11 GMEAQ---QTNLDVISHNIANVNTVGFKKSRANFEDLIYQDIRDPGVMSSEENRVPSGIQ 67 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G +V GS + T LD A++G +F +E P G TR G F++ ++G Sbjct: 68 IGLGVKVSDVSKIFTQGSLMKTDKPLDLAIQGAGFFKIELPGGGEAYTRAGNFQLNEEGY 127 Query: 114 LVSASGKY--PVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 +V+ G P + ++S V I I +++ V G + Q + + T+ LY Sbjct: 128 IVTPEGYKLSPNIQISSPETVVNISISPNGKVYVVRNTGGV-QTTEEVGTIKLYRFINPA 186 Query: 168 GF--------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G V+ + SG P + P D G + +GFLE SN N + EM +I Sbjct: 187 GLKALGGNLLVKTDASG-EP-VEGDPNTDGFG-KLAQGFLEASNVNIVEEMVNLI 238 >gi|114799186|ref|YP_758987.1| flagellar basal body rod protein FlgG [Hyphomonas neptunium ATCC 15444] gi|114739360|gb|ABI77485.1| flagellar basal-body rod protein FlgG [Hyphomonas neptunium ATCC 15444] Length = 261 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/247 (21%), Positives = 107/247 (43%), Gaps = 39/247 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 S I + A + R+ +++N++N T +R +FS+++ G I + + Sbjct: 3 SLQIAASGMAAQQMRVEVISNNIANMSTTAYRPRTAEFSDLMYQQYLTPGTITSQVG--- 59 Query: 57 SFVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 + V SG + + G+ T ELD A++G+ + + P G TRDG+ Sbjct: 60 TVVPSGIQLGSGVRPTTVSMDLTQGTLRETQAELDIAIDGNGFLEVTLPSGEPAFTRDGK 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMG 159 + DG +V++ G +P+ D I IP+ ++ GE+ +G+ I ++ Sbjct: 120 LSRSPDGEIVTSDG-FPLAD----GIVIPEDARRISISRDGEVVAYFDNETEGQAIGSIS 174 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L +G + RE P P + G +++G++EDS + + E+ + Sbjct: 175 LVRFVNEKGLEAMGDNMFRETEASGPANRLIPGTEGMGF-LRQGYIEDSAVDVVKEIADL 233 Query: 214 IHLTQKF 220 I + + Sbjct: 234 IEAQRGY 240 >gi|237755437|ref|ZP_04584062.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium yellowstonense SS-5] gi|237692401|gb|EEP61384.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium yellowstonense SS-5] Length = 266 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 104/245 (42%), Gaps = 55/245 (22%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE----------VVGAIKNDIDQKIS 57 G+ AQ + L ++ N++N +TVGF+ + F + V+ + +N + I Sbjct: 11 GMEAQ---QTNLDVISHNIANVNTVGFKRSRANFEDLIYQDVRDPGVLSSTQNRVPAGIQ 67 Query: 58 F-----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 V+ + S+ GS + T LD A++G+ +F +E P G TR G F++ ++ Sbjct: 68 IGLGVKVSDVAKMFSQ--GSLMKTDNPLDVAIQGEGFFKIEMPDGSEAFTRAGNFQLDNE 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI--------------AT 157 G +V+ G S IQI + + N+ IS GKVI Sbjct: 126 GYIVNPEGY-----RLSPNIQISAPETVLNI----SISPNGKVIVVRNSGGQQTTEEVGN 176 Query: 158 MGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 + LY G F E SG P I P D G + +GFLE SN N + E Sbjct: 177 IKLYKFINPAGLKAIGGNLFKYTEASG-QP-IEGDPNTDAFG-KLTQGFLEMSNVNIVEE 233 Query: 210 MGQMI 214 M +I Sbjct: 234 MVNLI 238 >gi|119384847|ref|YP_915903.1| flagellar basal body rod protein FlgG [Paracoccus denitrificans PD1222] gi|119374614|gb|ABL70207.1| flagellar basal-body rod protein FlgG [Paracoccus denitrificans PD1222] Length = 261 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 112/239 (46%), Gaps = 34/239 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G++AQ + R+ +++N++N T G+ + +F+++ GA+ Sbjct: 10 GMSAQ---QMRVDVISNNLANMSTTGYNARRAEFADLQYQQATRPGTLTATNGAMVPAGV 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 Q V + G+ + T +LD A+EG+ + + P GI TRDG K + +G Sbjct: 67 QLGLGVRPASVTVMLAQGTPVQTNGDLDIAIEGNGYLEVTLPSGISAYTRDGSLKRSAEG 126 Query: 113 SLVSASGKYPVLDMASVP-----IQIPQKDEIFNV-GEKGEISQKGKV-----IATMGLY 161 +V++ G YP++ ++P I I ++F ++ E G++ + GL Sbjct: 127 QVVTSEG-YPLVPDITIPEDARSIAINADGQVFAYFDDRVEPENLGQITLANFVNGKGLE 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +V S F+ SG +P + E L T++ GFLE+S+ + + E+ ++I + + Sbjct: 186 AVG-SNMFLETPASG-APQVAAPGQEGLG--TIRAGFLEESSVDPVREIAELIKAQRGY 240 >gi|207108222|ref|ZP_03242384.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori HPKX_438_CA4C1] Length = 137 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 18/137 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ I F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVASGKE--------------YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS K Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG 119 DG F V DG LV+ +G Sbjct: 121 DGHFSVDKDGFLVTLNG 137 >gi|254473318|ref|ZP_05086715.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] gi|211957434|gb|EEA92637.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] Length = 262 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 44/244 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------------GA--IKNDI 52 G++AQ ++ L +++N++N +T F+ + +FS+++ GA + I Sbjct: 10 GMSAQ---QKNLEVISNNIANMNTTAFKASRAEFSDLLYQMDRAAGVSNRGGAAPVPEGI 66 Query: 53 DQKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 Q + A+ +E SK G T D A++G WF + P G + TR G F V Sbjct: 67 QQGLGVKTAAIRELHSK--GPLNHTTNTFDLAIDGQGWFEVVGPDGEALYTRAGAFNVNG 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVD 164 +G+LV+ G Y V +VPI + V E GE+ I + L S Sbjct: 125 EGALVTLDG-YEVQPGITVPIDAVK----ITVNESGEVFATYADGNPATSIGQLSLTSFV 179 Query: 165 MSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G F E SG +PN L +++G+LE +N + + E+ +I Sbjct: 180 NDAGLRAIGGNLFRETEASG-APNTGIAGEGPLG--VIRQGYLEGANVDPVKEITSLISA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRGY 240 >gi|50120641|ref|YP_049808.1| flagellar basal body rod protein FlgG [Pectobacterium atrosepticum SCRI1043] gi|49611167|emb|CAG74613.1| flagellar basal-body rod protein [Pectobacterium atrosepticum SCRI1043] Length = 260 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + + +++N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLNAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTIRQPGAQSSEQTMLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G +S E G+F TG D A++G +F ++ P G TRDG F++ +G Sbjct: 68 LGTGVRPVSTERIHTQGTFSETGNSKDVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----GLYS 162 LV++SG Y V +VP + +D I +V +G+ + Q G++ T GL S Sbjct: 128 LVTSSG-YQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIGQLTLTTFINDSGLES 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 M + S +PN P + +G+ ++ ++E SN N E+ MI TQ+ Sbjct: 187 --MGENLYLETASSGAPN-ETNPGLNGAGLLYQK-YVETSNVNVAEELVSMIQ-TQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + + ML+ + + Sbjct: 242 INSKAISSSDQMLQKLTQL 260 >gi|157961172|ref|YP_001501206.1| flagellar basal body rod protein FlgF [Shewanella pealeana ATCC 700345] gi|157846172|gb|ABV86671.1| flagellar basal-body rod protein FlgF [Shewanella pealeana ATCC 700345] Length = 247 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 101/215 (46%), Gaps = 23/215 (10%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF++ + + + A + ++ F + + G +TG Sbjct: 19 LAVSANNLANANTDGFKS-SLAQARSMQAFGEGLPTRV-FSMTETPSANFASGPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP--- 134 +LD A++GD W A+++ G TR G + + G L + G + D + + +P Sbjct: 77 DLDIAVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDKGTAVMGDNGPIVLPLPIEK 136 Query: 135 ---QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN------SGISPNIPPTP 185 +D I +V G ++ + +A + L + +Q +R E+ SG N P P Sbjct: 137 VEISQDGIVSVRPSGATAEVIEEVARIKLVNPG-NQNLMRGEDGLFRLMSG--ENAPADP 193 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + G +E SN N+++EM MI L ++F Sbjct: 194 -----SVGLLSGAVEGSNVNAVHEMVSMIDLQRQF 223 >gi|313200563|ref|YP_004039221.1| flagellar basal body flae domain-containing protein [Methylovorus sp. MP688] gi|312439879|gb|ADQ83985.1| flagellar basal body FlaE domain protein [Methylovorus sp. MP688] Length = 402 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A + L + +N++N +TVGF+ + +F++V N + + Sbjct: 2 SFQQGLSGLNAASKSLDVIGNNVANANTVGFKQSRAEFADVYANALNGSGTGSAGIGVKV 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + ++ G+ +T LD A+ G+ +F L + I +R+G+F++ G +V++SG+ Sbjct: 62 ADIQRQFTQGNITNTENPLDIAINGNGFFRLSNSGAITYSRNGQFQLDKAGYIVTSSGE 120 >gi|302343296|ref|YP_003807825.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301639909|gb|ADK85231.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 239 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 16/147 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A +RL+ A+N++N T G+ +V+ +++ G ++ V G+ L+ Sbjct: 9 GISGMNAAVRRLNQSANNLANISTPGYVPSRVEQADLAGG-------GVAVV--GQTALA 59 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G +STG LD A++G +F L+ G + TR G F + DG LV +G+ + Sbjct: 60 S--GPIVSTGNALDLAIDGAGYFVLQDADGNELYTRAGNFSLNADGQLVDQTGRL----V 113 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGK 153 + Q PQ VG G + G Sbjct: 114 QAEGFQAPQGTAQIQVGADGVVQALGA 140 >gi|126738578|ref|ZP_01754283.1| flagellar basal-body rod protein FlgG [Roseobacter sp. SK209-2-6] gi|126720377|gb|EBA17083.1| flagellar basal-body rod protein FlgG [Roseobacter sp. SK209-2-6] Length = 261 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++AQ + R+ T+++N++N +T + + +F+++ + + + AS L Sbjct: 10 GMSAQ---QLRVETISNNLANMNTTAYNARRAEFADL---HYQQVSRAGTINASDGTVLP 63 Query: 68 KEV-----------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 V G+ T ++LD A+EG + + P G TRDG K + Sbjct: 64 TGVQVGLGVRPAAISVHLNQGALKQTNSDLDVAIEGKGYLEVTLPSGQSAYTRDGALKRS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 +G +V++ G YPV S I IP ++ +GE+ S G+++ L Sbjct: 124 AEGLIVTSDG-YPV----SPEITIPNDALSISINPEGEVYAYFDESTAGQLLGQFNLAGF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +G F+ E SG + T ED G ++++G+LE S+ +S+ E+ ++I Sbjct: 179 TNPKGLEALGSNLFIATEASGAANT--STAGEDGLG-SLRQGYLEGSSVDSVREVTELIE 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRGY 240 >gi|121997318|ref|YP_001002105.1| flagellar basal-body rod protein FlgF [Halorhodospira halophila SL1] gi|121588723|gb|ABM61303.1| flagellar basal-body rod protein FlgF [Halorhodospira halophila SL1] Length = 246 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 28/180 (15%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G +TG +LD A++ + WF +++P G TR G F+ T +G L + G V+ A Sbjct: 69 GPIETTGRDLDVAIQDEGWFVVQAPDGDEAYTRRGDFQTTPEGLLTTGDGHM-VMGEAG- 126 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIAT-------------MGLYSVDMSQGFVRRENSG 176 PI IP ++ +I+ G + AT + L + D +Q V+ E+ G Sbjct: 127 PISIPPDTKV-------DIADDGVITATPQGGAGAPIELDRLRLVNPDPTQ-LVKGED-G 177 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS---ITTLIDENEKS 233 + + P D + V V+ G LE SN N + MI ++F + + T +ENE++ Sbjct: 178 LIRHAEGEPAADDAQVRVRGGALEGSNVNMAESLVNMIDHARQFETHIKMLTAAEENEQT 237 >gi|313673204|ref|YP_004051315.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939960|gb|ADR19152.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] Length = 206 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 44/206 (21%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS- 67 L+A A ++ A+N++N + F K I F G E S Sbjct: 9 LSAISAGNKKYGVTANNIANISSTAF--------------KGKIAHLKEFSKGGVELYSV 54 Query: 68 ---KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 + +G FI+TG LD A+ GD +F + +R G + +G +V SG+ + Sbjct: 55 TSNEGIGYFINTGRPLDLAINGDGYFKFTDGNKEVYSRMGILSIDKNGEMVDVSGRRVGI 114 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 ++ + P + ++ KG + G+V + +Y+ +N G+ +P + Sbjct: 115 NVGTSPDNV-------HIDNKGNVYVDGEVKGKLQIYN----------QNGGV---VPDS 154 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEM 210 E LS GFLE SN + EM Sbjct: 155 NYEILS------GFLEASNVDIAKEM 174 >gi|325111113|ref|YP_004272181.1| flagellar basal-body rod protein FlgG [Planctomyces brasiliensis DSM 5305] gi|324971381|gb|ADY62159.1| flagellar basal-body rod protein FlgG [Planctomyces brasiliensis DSM 5305] Length = 267 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 34/230 (14%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKISFVASGKEYLSKEV- 70 +L +A+N++N+ T GF+ + +F ++ + + Q + +A G + Sbjct: 19 QLDVIANNLANSGTTGFKRSRAEFEDLFYEHFKLPGAQPAPQQTPTGIAVGLGAAIRATQ 78 Query: 71 -----GSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGKY-- 121 GS TG LD A+ GD +F ++ P G TR G F +G++V +S + Sbjct: 79 VDFTEGSLNQTGNSLDIAIMGDGFFQIQDPTGGDPYYTRAGTFTKNSEGTIVMSSAQTGR 138 Query: 122 ---PVLDM--ASVPIQIPQKDEIF-------NVGEKGEISQKGKVIATMGLYSVDMSQGF 169 P +++ +V I I E++ + + G+I Q + + GL + M + Sbjct: 139 PLEPSINIPPTAVNISITSNGEVWYQEAGSSTMTQAGQI-QLARFVNNEGL--IQMGENL 195 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 R ++ I P +D +G T+++GFLE SN + E+ ++I TQ+ Sbjct: 196 YRASDASGVATI-SIPGQDGAG-TLRQGFLETSNVEPVRELVELIK-TQR 242 >gi|71906393|ref|YP_283980.1| flagellar basal body rod protein FlgG [Dechloromonas aromatica RCB] gi|71846014|gb|AAZ45510.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB] Length = 260 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 42/257 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + +L +++N++N T GF+ + F +++ GA + Q + + Sbjct: 11 GLDAQ---QTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTLRQPGAQSSQQTQIPTGLQ 67 Query: 61 SG---KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 G + + + G+ T LD A++G+ +F + P G TRDG F+ + G Sbjct: 68 LGTGVRPVSTAHIFTQGNLQKTDNTLDIAVQGNGFFQILLPDGTTGYTRDGSFQKDNQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM------------- 158 +V++ G YP+ I IP +VG G +S Q G T Sbjct: 128 IVTSDG-YPLQPN----ITIPSNALSVSVGTDGTVSVTQSGSAATTQIGSIQLATFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL S + F+ SG P TP + +G+ V +G++E SN N E+ MI TQ Sbjct: 183 GLQSAGQNL-FLETAASGTP--TPNTPGSNGAGI-VNQGYVETSNVNVAEELVTMIQ-TQ 237 Query: 219 KFNSITTLIDENEKSML 235 + + + + +ML Sbjct: 238 RAYELNSKVVSTSDAML 254 >gi|218460753|ref|ZP_03500844.1| flagellar basal body rod protein FlgG [Rhizobium etli Kim 5] Length = 244 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 38/239 (15%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI---------SFVASGKEYL 66 +A+N++N +T G + + +F++++ + N +Q + S L Sbjct: 3 IANNIANINTTGSKRARAEFTDLLYQTERAKGVANRANQAVVPEGANIGLGVQTSAVRNL 62 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPVLD 125 + G TG +LD AL G +F ++S G L TR G F D G LV+ G Y VL Sbjct: 63 HLQ-GELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTIDG-YEVLP 120 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGF------VRRE 173 I IPQ + GE+S K V+ + L G + +E Sbjct: 121 ----GITIPQGSTELTISRSGEVSVKLPGATDATVLGQLTLADFVNEAGLQPIGDNLFQE 176 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF---NSITTLIDE 229 + + P E+ G +K+G+LE SN + + E+ ++I + + + + T DE Sbjct: 177 TAASGEAVVGNPDEEGFGY-MKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADE 234 >gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protein FlgG [Herbaspirillum seropedicae SmR1] gi|300074139|gb|ADJ63538.1| flagellar basal-body rod FlgG protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 39/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + +L +++N++N T GF+ + F +++ GA + Q S Sbjct: 11 GLDAQ---QTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQTQLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ T + D A++G+ +F + P G TRDG F+ G Sbjct: 68 IGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAFQTDSQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-MGLYSVDM----- 165 LV++SG Y + PI +P VG G +S Q G T +G V Sbjct: 128 LVTSSG-YTL----QPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFINPA 182 Query: 166 ---SQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 S+G ++ SG +PN P P + +G + +G++E SN N + E+ MI + Sbjct: 183 GLESRGENLYMETAASG-APN-PNNPGTNGAGA-LWQGYVETSNVNVVEELVNMIQTQRA 239 Query: 220 F 220 + Sbjct: 240 Y 240 >gi|326386932|ref|ZP_08208546.1| flagellar basal body rod protein FlgG [Novosphingobium nitrogenifigens DSM 19370] gi|326208612|gb|EGD59415.1| flagellar basal body rod protein FlgG [Novosphingobium nitrogenifigens DSM 19370] Length = 262 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 49/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGA-IKNDIDQKISF- 58 GL AQ + R+ +A+N++N T GF+ + F+ V GA N+ Sbjct: 12 GLEAQ---DTRMRVIANNLANVSTTGFKRDRANFASLAYQDARVAGAQSSNETTYATGLN 68 Query: 59 --VASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G + + ++ GS STG LD AL+GD +F + P G + TR G F + +G Sbjct: 69 LGTGVGIQSTTPDMTEGSLQSTGNALDLALDGDGYFQISMPGGQLSYTRAGNFTRSPEGL 128 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG-EISQKGKVIATMGLYSVDMSQGFVR- 171 LV++ G Y + ++P G G ++Q G V AT+ S S G + Sbjct: 129 LVTSQG-YALQPQITIP-----------EGATGITVAQDGTVSATLPGSSQATSIGQITI 176 Query: 172 -----------------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 E +G P ++ G V++GFLE SN + + E+ MI Sbjct: 177 ASFTNPAALKAIGDNFYTETTGSGPVQLGIAGQNGRG-NVRQGFLEASNVSVVSELVDMI 235 Query: 215 HLTQKF 220 + + Sbjct: 236 ECQRAY 241 >gi|225158946|ref|ZP_03725258.1| flagellar basal-body rod protein FlgG [Opitutaceae bacterium TAV2] gi|224802441|gb|EEG20701.1| flagellar basal-body rod protein FlgG [Opitutaceae bacterium TAV2] Length = 260 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 20/134 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---------------SF 58 A + L+T+A+N++N +T GF+ K++F +++ + + S Sbjct: 14 AQQLNLNTIANNLANVNTAGFKRSKIEFHDMLYQSPRNAGAETGNGNLLPTGVEIGNGSR 73 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSA 117 ++S + ++ G ++ +LD A++G+ +F ++ P G TRDG FK +G +V+A Sbjct: 74 ISSTAKIFTQ--GQLTASSEKLDIAIQGEGFFEIQRPDGTTAYTRDGSFKQDPNGQIVTA 131 Query: 118 SGKYPVLD-MASVP 130 G PVL +VP Sbjct: 132 DG-LPVLSGFQAVP 144 >gi|302343757|ref|YP_003808286.1| flagellar basal-body rod protein FlgG [Desulfarculus baarsii DSM 2075] gi|301640370|gb|ADK85692.1| flagellar basal-body rod protein FlgG [Desulfarculus baarsii DSM 2075] Length = 260 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 37/246 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKI--SFVASGKE 64 G+ AQ + L +++N++N +T GF+ + F +++ ++ Q+ + +GK+ Sbjct: 11 GMTAQ---QLNLDVISNNLANVNTTGFKKSRADFEDLMYQTLRQPGAQQAGGQMIPTGKQ 67 Query: 65 Y--------LSK--EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + K G + T +LD A+EG +F ++ + TRDG FK+ ++ + Sbjct: 68 VGMGVRPVAIQKIWSQGDYQQTDNQLDVAIEGQGFFRIQKDNEDVYTRDGSFKLNNNRDI 127 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGF 169 V ++G V M +P+ + G ++ + + + LY+ G Sbjct: 128 VDSNGNLLVPQMT-----VPENATSVVIDPNGLVTALTADDEAVELGRIQLYTFPNPSGL 182 Query: 170 VR------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF--- 220 + RE+ +P P D G T+ +GFLE SN + + EM MI + + Sbjct: 183 MAIGRNYFRESPASGVAVPGDPGADQFG-TLAQGFLEMSNVSVVDEMVNMIVAQRAYEAN 241 Query: 221 -NSITT 225 SITT Sbjct: 242 SKSITT 247 >gi|261821155|ref|YP_003259261.1| flagellar basal body rod protein FlgG [Pectobacterium wasabiae WPP163] gi|261605168|gb|ACX87654.1| flagellar basal-body rod protein FlgG [Pectobacterium wasabiae WPP163] Length = 260 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + + +++N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLNAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQTMLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G +S E G+F TG D A++G +F ++ P G TRDG F++ +G Sbjct: 68 LGTGVRPVSTERIHTQGTFSETGNSKDVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----GLYS 162 LV++SG Y V +VP + +D I +V +G+ + Q G++ T GL S Sbjct: 128 LVTSSG-YQVQPAITVPANATELNIGRDGIVSVKLQGQAATNQIGQLTLTTFINDSGLES 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 M + S +PN P + +G+ ++ ++E SN N E+ MI TQ+ Sbjct: 187 --MGENLYLETASSGAPN-ESNPGLNGAGLLFQK-YVETSNVNVAEELVSMIQ-TQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + + ML+ + + Sbjct: 242 INSKAISSSDQMLQKLTQL 260 >gi|261339378|ref|ZP_05967236.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] gi|288318179|gb|EFC57117.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] Length = 260 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQIQLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-TPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|241203106|ref|YP_002974202.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856996|gb|ACS54663.1| flagellar basal-body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 262 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 46/251 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI---------SF 58 A + L +A+N++N +T GF+ + +FS+++ + N +Q + Sbjct: 13 AQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQAVVPEGANIGLGV 72 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSA 117 S L + G TG +LD AL G +F ++S G L +R G F D G LV+ Sbjct: 73 QTSAVRNLHLQ-GELTQTGNDLDVALIGKGFFQIQSTDGTTLYSRAGAFNKNDQGQLVTI 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIAT-MGLYSVDMSQGFVRREN 174 G Y VL I IP + G+++ K G AT +G ++ FV Sbjct: 132 DG-YEVLP----GITIPTGSTELTISRSGQVTAKLPGATEATELGQLTL---ADFVNE-- 181 Query: 175 SGISP---NI---PPTPLEDLSG-------VTVKRGFLEDSNANSMYEMGQMIHLTQKF- 220 +G+ P N+ P E + G +K+G+LE SN + + E+ ++I + + Sbjct: 182 AGLQPLGDNLFQETPASGEAVIGNPDEEGFAYMKQGYLESSNVDPVKEITELISAQRAYE 241 Query: 221 --NSITTLIDE 229 + + T DE Sbjct: 242 MNSKVITTADE 252 >gi|163781856|ref|ZP_02176856.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] gi|159883076|gb|EDP76580.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] Length = 494 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKISFVASGKEYLSK------E 69 + +DN+SN +TV F+ + F +V+ ++ N + I G + Sbjct: 19 IDVTSDNLSNVNTVAFKAHRPLFQDVISSVTIGLNVVTGTIKSTTYGAGVVVDSTQKLWN 78 Query: 70 VGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSASGKY 121 +G+F TG D A++G F L+ P + TRDG+F+++ DG +V++ G Y Sbjct: 79 IGNFKQTGVNTDLAIQGRGLFILKDPITGANLYTRDGQFRLSRDGYMVTSGGFY 132 >gi|329888226|ref|ZP_08266824.1| flagellar basal-body rod protein FlgG [Brevundimonas diminuta ATCC 11568] gi|328846782|gb|EGF96344.1| flagellar basal-body rod protein FlgG [Brevundimonas diminuta ATCC 11568] Length = 262 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 19/138 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G+AAQ + + +++N++N +TVGF+ + +F +++ G + Sbjct: 10 GMAAQ---QLNVEVISNNIANMNTVGFKRQRAEFQDLLYQNVERMGAQSSSQGTVVPTGI 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 Q S V +G Y E GS TG D A++G +F + P G + TR G F V +G Sbjct: 67 QIGSGVKAGSVYRITEQGSPNRTGNTYDIAIQGKGYFQITLPSGELAYTRAGNFTVNGEG 126 Query: 113 SLVSASGKYPVLDMASVP 130 LV+ G Y V ++P Sbjct: 127 QLVTDDG-YAVEPAIAIP 143 >gi|71906392|ref|YP_283979.1| hypothetical protein Daro_0753 [Dechloromonas aromatica RCB] gi|71846013|gb|AAZ45509.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB] Length = 247 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 88/216 (40%), Gaps = 34/216 (15%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N T+GF+ + +F V ++ + +FV + G + TG LD Sbjct: 23 ANNLANASTIGFKAQEHRFRAV--PVQGEGMPTRAFVVDASVSDVMDEGPLMFTGRNLDV 80 Query: 83 ALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A++G W ++ P G TR G V G L + SG YPV PI IP D Sbjct: 81 AVQGKGWIGVQLPDGSEAYTRAGSLDVDVTGLLQTKSG-YPVAGDGG-PINIP-PDNTIE 137 Query: 142 VGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP-----------------T 184 + G +S V+ T G + + G ++ N PP Sbjct: 138 IAPDGTVS----VVPTFGTPNNANAIGRIKLVN-------PPEADLVRGADGLFRLRNNQ 186 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P + V + G LE SN N M +I L+++F Sbjct: 187 PAVADANVKLAAGTLEGSNVNVTDAMVNLISLSRQF 222 >gi|227112523|ref|ZP_03826179.1| flagellar basal body rod protein FlgG [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 260 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + + +++N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLNAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQTMLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G +S E G+F TG D A++G +F ++ P G TRDG F++ +G Sbjct: 68 LGTGVRPVSTERIHTQGTFSETGNSKDVAIKGQGFFQVQLPDGTTAYTRDGAFQLDGNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----GLYS 162 LV++SG Y V +VP + +D I +V +G+ + Q G++ T GL S Sbjct: 128 LVTSSG-YQVQPAITVPANATELNIGRDGIVSVKVQGQAATNQIGQLTLTTFINDSGLES 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + ++ +SG +PN P + +G+ ++ ++E SN N E+ MI TQ+ Sbjct: 187 IGENL-YLETASSG-APN-ETNPGLNGAGLLYQK-YVETSNVNVAEELVSMIQ-TQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + + ML+ + + Sbjct: 242 INSKAISSSDQMLQKLTQL 260 >gi|217077695|ref|YP_002335413.1| flagellar hook protein FlgE [Thermosipho africanus TCF52B] gi|217037550|gb|ACJ76072.1| flagellar hook protein FlgE [Thermosipho africanus TCF52B] Length = 704 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 17/126 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK----FSEVVGAIKNDID-------QKI 56 G+ +Q + V +N++N T+GF+ +V FS+V+ K + ++I Sbjct: 8 GVTGLQGFQQAIDVVGNNIANVSTIGFKASRVTYATTFSQVLELSKRATELTGGTNPKQI 67 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + VAS + +S+ GSF +TG + D A++GD +F L+ G I TR G F + +G Sbjct: 68 GYGVKVASIDKIMSQ--GSFQNTGKKTDLAIQGDGFFILKDGSGKIYYTRAGNFDLDVNG 125 Query: 113 SLVSAS 118 +LV AS Sbjct: 126 TLVQAS 131 >gi|15595120|ref|NP_212909.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi B31] gi|2688723|gb|AAC67131.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi B31] Length = 300 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L TV++N++N D +G++ +I+ F E++ ND D F Sbjct: 28 SGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 86 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 87 PVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 146 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 147 KEGILVTKSG-FPVL 160 >gi|315636319|ref|ZP_07891569.1| flagellar basal-body rod protein FlgG [Arcobacter butzleri JV22] gi|315479408|gb|EFU70091.1| flagellar basal-body rod protein FlgG [Arcobacter butzleri JV22] Length = 262 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 45/262 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------DIDQKIS 57 A++ ++ ++N++N +T GF+ + +F +++ N D+ + Sbjct: 14 AMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTTLNPTGIDVGLGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 KE+ G STG LD A+ G +F + P G +R+G FK+ ++G++V+ Sbjct: 74 ISNIQKEFTE---GDLKSTGNPLDIAIAGKGFFQITLPSGETAYSRNGNFKLNEEGTIVN 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----------GKV-----IATMGLY 161 +G YP+ VP + KD +VG G ++ K G++ I GL Sbjct: 131 GNG-YPLQPEIVVPNNV--KD--ISVGTDGLVTAKDPQTGDTIELGQITLADFINPAGLT 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + S F++ E SG P + P + G ++K+ LE SN + EM +I + + Sbjct: 186 PLGDSL-FMQSEASG--PVVEGDPTTEQFG-SLKQSMLESSNVKLVNEMVDLITAQRAYE 241 Query: 222 SITTLIDENEKSMLEAIRNIAS 243 + + I + +ML+ + + S Sbjct: 242 ANSKAITTAD-NMLDIVNRLKS 262 >gi|312621332|ref|YP_004022945.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor kronotskyensis 2002] gi|312201799|gb|ADQ45126.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor kronotskyensis 2002] Length = 267 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 65/278 (23%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G+ AQ + + +++N++N +T F+ K +F +++ + D VA + + Sbjct: 10 LGMKAQ---QTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRAD----VVAGDGKPV 62 Query: 67 SKEVGSFIS---------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTD- 110 S ++G ++ T LD A++G+ +F + +P G TRDG FKV++ Sbjct: 63 SLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVSNV 122 Query: 111 DGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEISQK---------------- 151 +G LV++ G YPVL I +P+ + E G I+ K Sbjct: 123 EGQIKLVTSDG-YPVLAEGDTEIILPETAISSITIDETGRITYKDAEGQVQDSGLKIKIV 181 Query: 152 ------GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFLEDSN 203 G + LY+V + G P E++ G + +GFLE SN Sbjct: 182 RFINPQGLLAEGKNLYNVSAASG-------------DPVSEEEMEGQKSRILQGFLEMSN 228 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + EM ++I + Q+ I + + ML N+ Sbjct: 229 VQVVDEMVKLI-IAQRAYEINSKAIQTADDMLSMANNL 265 >gi|225551767|ref|ZP_03772710.1| flagellar hook-basal body complex protein [Borrelia sp. SV1] gi|225371562|gb|EEH00989.1| flagellar hook-basal body complex protein [Borrelia sp. SV1] Length = 282 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L TV++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEILIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PVVGKLGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|188592119|ref|YP_001796717.1| flagellar basal body rod protein flgg [Cupriavidus taiwanensis LMG 19424] gi|170938493|emb|CAP63480.1| FlgG: Flagellar basal-body rod protein [Cupriavidus taiwanensis LMG 19424] Length = 261 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 44/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + ++ +++N++N T GF+ + F E++ GA+ +D S Sbjct: 11 GLDAQ---QTQMDVISNNLANVSTNGFKRGRAVFEELMYQTIRQPGALSSDQTTLPSGMQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ TG D A+ G +F + P G TRDG F+V +G Sbjct: 68 LGTGVRPVATERIHTQGNPQQTGNAKDVAILGQGFFQVALPDGTTAYTRDGSFQVDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATM---- 158 LV++SG V+ A I IP +G G +S Q G++ +AT Sbjct: 128 LVTSSGF--VIQPA---ITIPANTLSMTIGRDGTVSVTQPGSSANVQVGQLQLATFMNPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 GL S+ + +V+ + SG P T + L+G V++ ++E SN N + E+ MI T Sbjct: 183 GLESMGENL-YVQTDASG----APNTTVPGLNGAGVVQQNYVEASNVNVVEELVSMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + ML+ + + Sbjct: 237 QRAYEINSKAVQASDQMLQRLAQL 260 >gi|254227984|ref|ZP_04921414.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|262396034|ref|YP_003287887.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|151939480|gb|EDN58308.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|262339628|gb|ACY53422.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] Length = 243 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 17/206 (8%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +V+ E+ G D + + V + + G + TG L Sbjct: 23 SNNLSNADTAGFRADMERVRSVEMQGP---GFDGR-TMVVTNSASTRFDSGDIMKTGRPL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP--QKD 137 D A+ G+ + A+E+P G TR G +V G++ + +G +PVL + P+ +P QK Sbjct: 79 DVAIMGEGYLAVETPAGNEAYTRAGNIQVDTFGAM-TING-FPVLG-ENGPLVVPDYQKI 135 Query: 138 EIFNVGEKGEISQKGK---VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 EI G+ I G V T+ L +M+Q +++E+ + ++ P V + Sbjct: 136 EISERGQVSVIPPGGGAEIVAGTLKLVKPEMNQ--LQKESDSLLHSVDGVPFAADETVQL 193 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKF 220 +E SN +++ E+ ++ LT+ F Sbjct: 194 SPEHIEGSNVSAIDELISVMSLTRNF 219 >gi|319787121|ref|YP_004146596.1| flagellar hook-basal body protein [Pseudoxanthomonas suwonensis 11-1] gi|317465633|gb|ADV27365.1| flagellar hook-basal body protein [Pseudoxanthomonas suwonensis 11-1] Length = 406 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 19/152 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQ--KI 56 SFN L+ A L+ ++N++N++TVGF++ + +F+++ G N + K+ Sbjct: 2 SFNASLSGINAANADLNVTSNNIANSNTVGFKSSRAEFADLFSSTSYGLASNAVGSGVKV 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S VA + S+ G+ TG LDFA++G+ F + TR G F+ + G +V+ Sbjct: 62 SNVA---QQFSQ--GNIDPTGRSLDFAIDGEGLFTVSKNGDTFYTRAGNFQPDNRGFVVT 116 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 G A + + P + F+VG ++ Sbjct: 117 PDG-------ARLQVYAPNANGGFDVGRTTDL 141 >gi|319790434|ref|YP_004152067.1| flagellar basal-body rod protein FlgG [Thermovibrio ammonificans HB-1] gi|317114936|gb|ADU97426.1| flagellar basal-body rod protein FlgG [Thermovibrio ammonificans HB-1] Length = 266 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 61/275 (22%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G+ AQ + L +++N++N +TVGF+ + F +++ G + ++ ++ + + Sbjct: 11 GMEAQ---QTNLDVISNNIANVNTVGFKRSRANFEDLMYQDIRDPGVMSSEENRVPTGIQ 67 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G +V GS I T LD A++G +F +E P G TR G F++ ++G Sbjct: 68 IGLGVKLSDVSKIFTQGSLIKTDKPLDVAIQGPGFFKIELPGGGEAYTRAGDFQLDNEGY 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI--------------ATMG 159 +V+ G S IQI + + N+ IS GKV T+ Sbjct: 128 IVTPEGY-----RLSPNIQISAPETVVNI----SISPNGKVYVVRNTGGQQVTEEAGTIK 178 Query: 160 LYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 LY G FV+ E SG P I P D G + +GFLE SN N + EM Sbjct: 179 LYRFINPAGLKAIGGNLFVQTEASG-EP-IEGDPNTDGFG-KLTQGFLEASNVNIVEEMV 235 Query: 212 QMIHLTQKFNSITTLIDENEKSML---EAIRNIAS 243 +I + + + N K ++ E +R +AS Sbjct: 236 NLIVAQRAY-------EINSKGIIAADEMLRTVAS 263 >gi|302343058|ref|YP_003807587.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301639671|gb|ADK84993.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 452 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 9/115 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISF 58 TSF G++ + Q L+ VADN++N++T G+++ + +F++V + +D+ +I Sbjct: 4 TSFFNGVSGLKSFSQGLNIVADNLANSNTYGYKSSRAEFADVLYRELSYTGSDLTTEIDQ 63 Query: 59 VASGKEYLSKEV---GSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFKV 108 V G S ++ G+ TG LD A++G+ +F +++ + TR G+F V Sbjct: 64 VGQGATVWSHQLMNQGAIQETGRTLDLAIDGNGFFTVKNLDTEELYYTRAGQFGV 118 >gi|83647171|ref|YP_435606.1| flagellar basal body rod protein FlgG [Hahella chejuensis KCTC 2396] gi|83635214|gb|ABC31181.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 261 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 42/260 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GLAAQ + L T+++N++N +T GF+ + F +++ IK Sbjct: 11 GLAAQ---DTALKTISNNLANVNTTGFKRDRAVFQDLLYQIKRQPGGQSSQDTQLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + V + K + G+ T LD A+ G +F + P G I TRDG+F + Sbjct: 68 LGTGVRVVGTQKVFSE---GNLEVTEQPLDIAINGRGFFQILMPDGTISYTRDGQFHLNS 124 Query: 111 DGSLVSASGKYPVLDMASVP---IQIP-QKDEIFNVGEKGEI--SQKGKV-----IATMG 159 DG +V+A+G +P+ +VP + + D + +V G +Q G + I G Sbjct: 125 DGDVVTANG-FPLEPGITVPDGALHLTISTDGVVSVTVAGTATPTQVGNINTVDFINPAG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQ 218 L ++ + + RE + TP L+G+ TV++G +E SN + EM MI TQ Sbjct: 184 LEAIGNN---LFRETAASGDPQEGTP--GLAGLGTVEQGMVETSNVEIVEEMVNMI-TTQ 237 Query: 219 KFNSITTLIDENEKSMLEAI 238 + + + ML+ I Sbjct: 238 RAYEMNAKVVTTADQMLQYI 257 >gi|332140548|ref|YP_004426286.1| flagellar basal body rod protein FlgG [Alteromonas macleodii str. 'Deep ecotype'] gi|327550570|gb|AEA97288.1| flagellar basal body rod protein FlgG [Alteromonas macleodii str. 'Deep ecotype'] Length = 262 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/260 (20%), Positives = 116/260 (44%), Gaps = 43/260 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVASGKE 64 A + ++ V++N++N TVGF+ + F +++ N + S + SG + Sbjct: 14 AAQTDVAVVSNNLANASTVGFKKDRAVFEDLLYQNINQPGGRSSADTELPSGLMLGSGSK 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 ++ + G+ ++T LD +++G +F + P G I +R+G+F + D G +V++ Sbjct: 74 VVATQKAHTQGNLLTTENALDMSIQGRGYFEILQPDGTIAYSRNGQFSLNDQGQIVTSGA 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQG----- 168 + + + IP+ + + + GEIS + +V+ + + G Sbjct: 134 GF----LLQPEVAIPEDAQQITISQDGEISVSIRGQAEPQVLGQLNISDFVNPTGLQPTG 189 Query: 169 ---FVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFN 221 FV +SG P++ + G+ + +G LE SN N E+ +I + + Sbjct: 190 QNLFVETASSG-------APIQGIPGLQGLGYISQGTLETSNVNVTEELVNLIESQRLYE 242 Query: 222 SITTLIDENEKSMLEAIRNI 241 + +I ++ + + I+ + Sbjct: 243 MNSKVISSVDQMLGQVIQQL 262 >gi|146295641|ref|YP_001179412.1| hypothetical protein Csac_0595 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409217|gb|ABP66221.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 267 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 51/271 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G+ AQ + + +++N++N +T F+ K +F +++ + D +A + + Sbjct: 10 LGMKAQ---QTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRAD----VIAGDGKPV 62 Query: 67 SKEVGSFIS---------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTD- 110 S ++G ++ T LD A++G+ +F + +P G TRDG FKV++ Sbjct: 63 SLQIGHGVTISAITKSFSEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVSNV 122 Query: 111 DGS--LVSASGKYPVLDMASVPIQIPQK-------DEIFNVGEK---GEISQKG------ 152 +G LV++ G YPVL I +P+ DE + K G+I G Sbjct: 123 EGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDAEGQIQDSGFKIKIV 181 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFLEDSNANSMYEM 210 + I GL +++G S S + P E++ G + +GFLE SN + EM Sbjct: 182 RFINPQGL----LAEGKNLYNVSAASGD--PVSEEEIEGPKSRILQGFLEMSNVQVVDEM 235 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++I + Q+ I + + ML N+ Sbjct: 236 VKLI-IAQRAYEINSKAIQTADDMLSMANNL 265 >gi|119775449|ref|YP_928189.1| flagellar basal body rod protein FlgF [Shewanella amazonensis SB2B] gi|119767949|gb|ABM00520.1| flagellar basal-body rod protein FlgF [Shewanella amazonensis SB2B] Length = 247 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 30/239 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 LS A+N++N +T GF+ ++ S + A + ++ F + S G ST Sbjct: 19 LSIRANNLANANTDGFKA-DLEQSRSMQAFGEGLPTRV-FAMTENPQASFRHGPINSTAR 76 Query: 79 ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP--- 134 +LD A++GD W A+E G TR G K + G L ++ G+ PV+ A PI +P Sbjct: 77 DLDVAVKGDGWIAVEDADGNEAYTRAGSLKFDETGLLTNSQGR-PVMGDAG-PIVLPLPI 134 Query: 135 -----QKDEIFNVGEKGEISQKGKVIATMGLYS------VDMSQGFVRRENSGISPNIPP 183 +D V +G ++ + +A + L + + G R N +P Sbjct: 135 DKVEIAQDGTITVRPQGATAEVVEEVARIKLVNPGNQNLMRGDDGLFRMMNGTTAPQDET 194 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEKSMLEAIR 239 LE + +E SN N + EM +I + ++F ++ +EN+K+ + +R Sbjct: 195 VALESRA--------VEGSNVNPVEEMVALIDIQRQFELQVKMMKTAEENDKASAQLVR 245 >gi|212634350|ref|YP_002310875.1| flagellar basal body rod protein FlgG [Shewanella piezotolerans WP3] gi|212555834|gb|ACJ28288.1| Flagellar basal-body rod protein FlgG [Shewanella piezotolerans WP3] Length = 262 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 32/233 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + +S +++N++N TVGF+ + F ++ V A + ++ Sbjct: 11 GLDAQ---QTDISVISNNVANASTVGFKKSRAVFEDLLYQNVNQAGGVSASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 A + +++V G+ ++T LD +EG +F ++ P G TR G+F + D G Sbjct: 68 IGAGTQVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEVQMPDGTAAYTRTGQFSLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQ 167 +V+ Y V I IP V +GE+S K +V+ + + Sbjct: 128 IVTPGSGYVV----QPAITIPDDATSITVSAEGEVSVKTPGNAENQVVGQLAMSDFINPA 183 Query: 168 GF-VRRENSGISPNIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G +N + TP++ L G+ +++G LE SN N E+ +I Sbjct: 184 GLDPMGQNLYMETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|225548842|ref|ZP_03769819.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 94a] gi|225370445|gb|EEG99881.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 94a] Length = 282 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L TV++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|307719963|ref|YP_003891103.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] gi|306978056|gb|ADN08091.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] Length = 420 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 19/132 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---------EVVGAIKND 51 M +F G++ + V+DNM+N DT+GFR +FS + +G N Sbjct: 2 MTQAFYTGISGIKTNSTGIDIVSDNMANIDTIGFRGNDYEFSSLFENMLSTDTLGTPSN- 60 Query: 52 IDQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 S + G + + ++ GSF+ + D AL D WF ++ + TRDG F Sbjct: 61 -----SSIGVGSQLQASPMVQQKGSFMISDKSTDLALFEDGWFGIKGNGNTLYTRDGNFT 115 Query: 108 VTDDGSLVSASG 119 D LV+ G Sbjct: 116 FDKDDDLVTQDG 127 >gi|229102371|ref|ZP_04233079.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-28] gi|228681018|gb|EEL35187.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-28] Length = 267 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 47/252 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNVQITNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------------KGKVIATM 158 D L ++SG Y V+D+ + I+IP+ F V GEI + K VIA + Sbjct: 123 DRYLQTSSGAY-VMDVNNERIRIPENVNFF-VSNNGEIYREINEGTLQKPDIKRIVIAQL 180 Query: 159 GLYSVDMSQG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG-- 211 +VD V+REN + NI P + +G+ VK LE+SN + EM Sbjct: 181 QTKTVDAETNARLVQRENKSFTLAEGNIANLP--NGTGI-VKDHMLENSNVDMTKEMADL 237 Query: 212 ----QMIHLTQK 219 +MI +Q+ Sbjct: 238 MSSQKMIQASQR 249 >gi|86750896|ref|YP_487392.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris HaA2] gi|86573924|gb|ABD08481.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris HaA2] Length = 262 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 25/158 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------I 52 G+AAQ E + +++N++N T GF+ +F ++ VGA +D + Sbjct: 10 GMAAQ---ELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTILPVGV 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 D G L + G+ +TG +LD A+ G+ +F ++ P G TRDG F + Sbjct: 67 DIGGGVKTVGTPRLMTQ-GTLSTTGNDLDLAIRGEGFFKIQMPDGTFSYTRDGSFTTDNT 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G +V+A+G P+ I IP V G++S Sbjct: 126 GRIVTANGN-PL----QPTITIPNGATSITVATNGQVS 158 >gi|224532954|ref|ZP_03673563.1| flagellar hook-basal body complex protein [Borrelia burgdorferi WI91-23] gi|224512118|gb|EEF82510.1| flagellar hook-basal body complex protein [Borrelia burgdorferi WI91-23] Length = 282 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L TV++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PIVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|182680457|ref|YP_001834603.1| flagellar hook protein FlgE [Beijerinckia indica subsp. indica ATCC 9039] gi|182636340|gb|ACB97114.1| flagellar basal body FlaE domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 415 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 13/117 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE--- 64 G+AAQ +LS V+DN++N++T G++ +F +V + K S+ A G + Sbjct: 13 GMAAQ---SNKLSAVSDNIANSNTTGYKQADTEFETLVNGLN-----KTSYDAGGVKTTI 64 Query: 65 -YLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 Y G ST + D ++G+ +F + G LTR G F DG+L + +G Sbjct: 65 RYNISSQGQLTSTSSATDLGIQGNGFFVVTDDSGTKYLTRAGSFTKNADGTLSNTAG 121 >gi|331671805|ref|ZP_08372601.1| putative flagella basal body rod protein [Escherichia coli TA280] gi|59889781|emb|CAH19137.1| Lateral flagellar rod protein (FlgF-like) [Escherichia coli] gi|284920045|emb|CBG33102.1| lateral flagellar rod protein (FlgF-like) [Escherichia coli 042] gi|331070794|gb|EGI42153.1| putative flagella basal body rod protein [Escherichia coli TA280] Length = 245 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRADMAMAT-------ND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G LV G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLV-IDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|51596013|ref|YP_070204.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 32953] gi|153947499|ref|YP_001401288.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|170024645|ref|YP_001721150.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis YPIII] gi|51589295|emb|CAH20916.1| flagellar basal-body rod protein FlgG (distal rod protein) [Yersinia pseudotuberculosis IP 32953] gi|152958994|gb|ABS46455.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|169751179|gb|ACA68697.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis YPIII] Length = 260 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+A G + V ++P +D I +V +G+ + Q G++ T G Sbjct: 125 NGQLVTAGG-FQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L SV + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LESV--GENLYQETASSGAPN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLAQL 260 >gi|222084865|ref|YP_002543394.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722313|gb|ACM25469.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 262 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 43/239 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFVASGK 63 A + L +A+N++N +T G++ + +FS+++ I N +Q + + + G Sbjct: 13 AQQTNLEVIANNIANINTTGYKRSRAEFSDLLYQTERAKGIANRPNQAVVPEGANIGLGV 72 Query: 64 EYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + + + G T +LD AL G WF ++ P G TR G F +D G +V+ Sbjct: 73 QTTAVRNIQIQGELSQTSNDLDVALVGRGWFQIQMPDGTTAYTRAGSFNKSDTGQMVTPD 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN---- 174 G VL I IP NV I+Q G+V AT+G + G ++ N Sbjct: 133 GN--VLQPG---ITIPSNAS--NV----VINQSGQVSATIGTATTPTVLGQLQIANFVNE 181 Query: 175 SGISP---NI-PPTPLEDLSGVT---------VKRGFLEDSNANSMYEMGQMIHLTQKF 220 +G+ P N+ TP V+ +K+G+LE SN + + E+ +I + + Sbjct: 182 AGLQPMGSNLFTQTPASGDPVVSDPNENGFAYMKQGYLESSNVDPVKEITDLITAQRAY 240 >gi|163789628|ref|ZP_02184066.1| hypothetical protein CAT7_09300 [Carnobacterium sp. AT7] gi|159875160|gb|EDP69226.1| hypothetical protein CAT7_09300 [Carnobacterium sp. AT7] Length = 251 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 86/165 (52%), Gaps = 23/165 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +I + A++ ++ V+++++N +T G+++ + F+E+ + ND++ + ++++ Sbjct: 1 MSIPLSISKSGMNAIQNQMDVVSNDIANINTTGYKSKNISFNEL---LLNDMNGEAAYLS 57 Query: 61 -----SGKEYLSKEV--------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 SG SK G+ +S + A+ G+ +F + G LTRDG F Sbjct: 58 ADAQGSGISIGSKSAVTSTNFTQGALVSDPNDYHLAIAGEGFFGVTGENGERYLTRDGAF 117 Query: 107 KVTDDGSLVSASGKYPVLDM-ASVPI-QIPQKDEIFNVGEKGEIS 149 V D S+ + +G L++ A++PI Q P+ D ++ E GE++ Sbjct: 118 HVNGDKSITNDNGD--TLEIQATIPINQWPEGD--VSIAENGEVT 158 >gi|223889387|ref|ZP_03623973.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 64b] gi|223885073|gb|EEF56177.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 64b] Length = 282 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L TV++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|296102906|ref|YP_003613052.1| flagellar basal body rod protein FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057365|gb|ADF62103.1| flagellar basal body rod protein FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 260 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-TPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|195941596|ref|ZP_03086978.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi 80a] gi|216264480|ref|ZP_03436472.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 156a] gi|226320635|ref|ZP_03796194.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 29805] gi|215980953|gb|EEC21760.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 156a] gi|226233958|gb|EEH32680.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 29805] gi|312148084|gb|ADQ30743.1| flagellar hook-basal body complex protein [Borrelia burgdorferi JD1] gi|312149492|gb|ADQ29563.1| flagellar hook-basal body complex protein [Borrelia burgdorferi N40] Length = 282 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L TV++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|95928662|ref|ZP_01311409.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] gi|95135452|gb|EAT17104.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] Length = 425 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV----GS 72 + +S +N+SN++T+G+++ FS+++ A + ++ V G E + GS Sbjct: 19 EAMSVTGNNISNSNTIGYKSSSTVFSDMLSATISTTGTSVNQVGRGSELTTVRSNFSQGS 78 Query: 73 FISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASG 119 F ST ++ D A+EG +F L + ++ TR+G F G LV+A G Sbjct: 79 FQSTSSDTDLAVEGAGFFMLSAAGTDEVVYTRNGAFHFDPGGYLVNADG 127 >gi|56965597|ref|YP_177331.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] gi|56911843|dbj|BAD66370.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 30/231 (12%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQKISFVASG------KE 64 L+ ++ T+++NM+N +T GF+ F++V+ + N+ Q + G + Sbjct: 14 LQAKIDTISNNMANAETTGFKRRSASFADVLTSEYLNQPNENRQTPHGLRVGTGAKLAQT 73 Query: 65 YLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRF-----KVTDDGSLVSAS 118 + E G+ TG ELDFAL E D ++ +E+ G LTRDG F V + LV++ Sbjct: 74 QIQLEQGTLRETGRELDFALTEADLFYNIETVAGTRLTRDGTFYFSPQAVGNGLELVTSD 133 Query: 119 GKYPVLDMASVPIQIP--------QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G VLD I +P + +F G Q G T L + G Sbjct: 134 GNR-VLDSDGEAIVMPGDTVSLEWRDGNLFAQLRNGGEQQVGSFALTRVLRPQTLESG-- 190 Query: 171 RRENSGISPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 N + P +P E ++ +K+ LE +N + EM +++ TQ+ Sbjct: 191 -GNNLYVLPELPGVSEEVVAADEHMKQNMLEQANVDLGLEMAELME-TQRL 239 >gi|226321475|ref|ZP_03797002.1| flagellar hook-basal body complex protein [Borrelia burgdorferi Bol26] gi|226233271|gb|EEH32023.1| flagellar hook-basal body complex protein [Borrelia burgdorferi Bol26] Length = 282 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L TV++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|319650828|ref|ZP_08004965.1| flagellar basal-body rod protein [Bacillus sp. 2_A_57_CT2] gi|317397426|gb|EFV78127.1| flagellar basal-body rod protein [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 110/276 (39%), Gaps = 42/276 (15%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F + LA ++R + +NM+N +T GF+ + + I QK G Sbjct: 5 FYTAASGMLAQQRRTEVLTNNMANANTPGFKADQTSLRAFPEMLLQRIGQKTVPTEKGLN 64 Query: 65 Y-LSKEVGSFIS------------------TGTELDFA-------------LEGDAWFAL 92 ++EVGS S TG D A L G ++ Sbjct: 65 LPFNQEVGSLNSGVYMQETLPSFMQGDMKETGLNTDLALLDLNLPVNPDTGLSGSVFYTA 124 Query: 93 ESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 G TR+G F + +G L +ASG Y +LD A IQ+ + F V E G I+ + Sbjct: 125 AGIDGEQRYTRNGNFTLDGEGYLTTASGLY-ILDDAGERIQL--SSDRFKVSEDGVITGE 181 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-----TVKRGFLEDSNANS 206 A +G+ + +R+E G+ + LE+ +++G+LE SN ++ Sbjct: 182 AGETARLGIMYAQNPES-LRKEGDGLFAVTEESVLENAYNAQNVQFKLQQGYLERSNVDA 240 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M M+ + F + ++ ++SM +A I Sbjct: 241 SRTMTDMMTAYRSFEANQKVLQAYDRSMEKAANEIG 276 >gi|309388846|gb|ADO76726.1| flagellar basal-body rod protein FlgG [Halanaerobium praevalens DSM 2228] Length = 260 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 30/229 (13%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGKEY 65 + + +++N++N +T GF+ K+ F++++ A ++ I K Sbjct: 16 QTNIDVISNNLANVNTSGFKKSKINFADLIYTQMRQPGTPNAQGAEVPTGIEIGHGSKVN 75 Query: 66 LSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 ++++ G+ +T + LD +EGD F ++ P G TRDG FK +G++V++ G Sbjct: 76 STQKIFTQGNIQNTDSPLDMVIEGDGLFRVQLPDGNFAYTRDGSFKQDSNGNVVTSDGYQ 135 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENSGI 177 LD QIPQ+ ++ G I+ + + + + LY G + Sbjct: 136 --LDPG---FQIPQEATEISITSDGTINALVDGENQQLGQIQLYRFANPAGLSSEGRNLY 190 Query: 178 SPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S + P E G TV +GFLE SN + EM MI + + Sbjct: 191 SDTVASGQAMQGVPGEQGFG-TVTQGFLEMSNVKVVEEMVNMIAAQRAY 238 >gi|331005470|ref|ZP_08328849.1| hypothetical protein IMCC1989_1994 [gamma proteobacterium IMCC1989] gi|330420746|gb|EGG95033.1| hypothetical protein IMCC1989_1994 [gamma proteobacterium IMCC1989] Length = 245 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 105/227 (46%), Gaps = 30/227 (13%) Query: 17 QRLSTVADNMSNTDTVGF-RTIKV--KFSEVV------GAIKNDIDQKISFVASGKEYLS 67 Q+L ++ N++N T + RT+ F+ V + + I I +++ +++ + Sbjct: 16 QKLDQLSHNVANMSTPAYKRTLSATESFTNTVSRFESPNRVASTIQNAIPTISTSRDFTT 75 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 GS ST LD A+EGD +F L + G ++ G F + ++G V SG +L+ Sbjct: 76 ---GSLSSTSNPLDLAIEGDGFFELTNNTGTFYSKRGNFLIDNNGQ-VKLSGTELLLNGV 131 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD-------MSQGFVRRENSGISPN 180 S I++ +D + G+I + GK ++ + + + D + QG + + + Sbjct: 132 SGDIRL--QDAEPEINSLGQIFENGKEVSQIRVINFDNPSSLISLGQGIFKVSEASVQ-- 187 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 +++ ++++ FLE SN+ +M +I L + + +I Sbjct: 188 ------KEVELPSIRQSFLEASNSQPAEDMLNLIQLARHIEATQQVI 228 >gi|258625233|ref|ZP_05720145.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM603] gi|258582480|gb|EEW07317.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM603] Length = 243 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 39/217 (17%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------------ 70 ++N+SN DT GFR D+++ SF G + + + Sbjct: 23 SNNLSNADTAGFRA--------------DMERAESFQLHGAGFDGRTMVVTNSATTRFDS 68 Query: 71 GSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G I TG LD A+ G+ + +E+P+ G TR G KV G++ +PVL S Sbjct: 69 GDVIKTGRPLDVAIIGEGYLTVEAPQGGEAYTRAGNIKVDAFGAMTING--FPVLG-ESG 125 Query: 130 PIQIPQKDEIFNVGEKGEIS-----QKGKV-IATMGLYSVDMSQGFVRRENSGISPNIPP 183 P+ +P+ +I +GE+G++S K+ + T+ L + Q +++E+ + N+ Sbjct: 126 PMVLPEYQKI-EIGERGQVSVIPPGGGAKIEVGTLKLTKPPIDQ--LQKESDSLLHNVNG 182 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P V + +E SN +++ E+ ++ LT+ F Sbjct: 183 EPFPVDETVQLVPEHVEGSNVSAVDELLSVMSLTRNF 219 >gi|258514011|ref|YP_003190233.1| hypothetical protein Dtox_0696 [Desulfotomaculum acetoxidans DSM 771] gi|257777716|gb|ACV61610.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 263 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 8/117 (6%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISFVASGKEY 65 G++ + R+ + +N++N +T G+++ +V+F +V+G + ++ K++ Sbjct: 8 GVSGMKNHQTRMDVIGNNIANVNTTGYKSSRVQFKDVLGQTIAGGQVASGVTIAGINKDF 67 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASG 119 GS +T D + G+ +F ++ P + TRDG F V D G LV++ G Sbjct: 68 TQ---GSQTATENSTDLYIHGNGFFIVQDPGDPSILYYTRDGSFHVDDTGQLVNSLG 121 >gi|118589981|ref|ZP_01547385.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] gi|118437478|gb|EAV44115.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 55/270 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDI 52 G++AQ + + VA+N++N +T F+ + +FS+++ + Sbjct: 10 GMSAQ---QMNVEVVANNIANMNTTSFKRSQAEFSDLLYQAERLQGVPNRGGEDPVPEGA 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + +G L + GS +TG + D AL+G WF + P + TR G F D Sbjct: 67 QLGLGVRTAGIRKLHAQ-GSLTNTGNQFDVALDGRGWFEITGPDDETLFTRAGSFNKNAD 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----------GKVIAT---- 157 G LV+ G YPV I +PQ+ V E G++ K G++ + Sbjct: 126 GRLVTIDG-YPV----EPAIIVPQETIEVVVNESGQVFAKVDGEMAPRELGQLTLSNFAN 180 Query: 158 -MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQ 212 +GL V + F E SG +P+ ++G +++G+LE SN + + E+ Sbjct: 181 DVGLEPVGGNL-FRETEASG-------SPVSGVAGDPGFGVIRQGYLESSNVDPVKEITA 232 Query: 213 MIHLTQKF---NSITTLIDENEKSMLEAIR 239 +I + + + + DE ++ IR Sbjct: 233 LISAQRGYEMNSKVMKAADEMAGTVTNGIR 262 >gi|121612923|ref|YP_001000393.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167005336|ref|ZP_02271094.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87249505|gb|EAQ72465.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 270 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVG--AIKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIAGFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +G +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGFLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLENSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAT 268 >gi|283852232|ref|ZP_06369505.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] gi|283572458|gb|EFC20445.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] Length = 518 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 7/125 (5%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKISF- 58 T+ G++ L+ Q ++ ++N++NT+TVG+++ ++ F++++ + D + +I Sbjct: 2 TAIWTGVSGMLSYSQGIANTSNNLANTNTVGYKSSRMLFADMISELAGSTTDTNSQIGMG 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRG--IILTRDGRFKVTDDGSLV 115 V G +S VG+ + +D A++G+ +F ++ P TR G F DG LV Sbjct: 62 VQVGTVSMSTGVGAIATGDQSMDMAIDGEHGYFTVKDPVSDKTYYTRAGDFNFNTDGYLV 121 Query: 116 SASGK 120 S +G Sbjct: 122 SPTGN 126 >gi|302383956|ref|YP_003819779.1| flagellar basal-body rod protein FlgG [Brevundimonas subvibrioides ATCC 15264] gi|302194584|gb|ADL02156.1| flagellar basal-body rod protein FlgG [Brevundimonas subvibrioides ATCC 15264] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 19/138 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G+AAQ + + +++N++N +TVG++ + +F +++ G + Sbjct: 10 GMAAQ---QLNVEVISNNIANMNTVGYKRQRAEFQDLIYQNVERMGAQSSSQGTVVPTGI 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 Q V +G Y E G+ TG++ D A++G +F + P G I TR G F ++ +G Sbjct: 67 QVGLGVKAGSVYRITEQGTPTQTGSDYDVAIDGQGYFQITMPSGEIGYTRAGNFSLSGEG 126 Query: 113 SLVSASGKYPVLDMASVP 130 LV+ G Y V S+P Sbjct: 127 QLVTEDG-YAVEPAISIP 143 >gi|218249387|ref|YP_002375274.1| flagellar hook-basal body complex protein [Borrelia burgdorferi ZS7] gi|221217927|ref|ZP_03589394.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 72a] gi|224533400|ref|ZP_03673994.1| flagellar hook-basal body complex protein [Borrelia burgdorferi CA-11.2a] gi|225549985|ref|ZP_03770946.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 118a] gi|218164575|gb|ACK74636.1| flagellar hook-basal body complex protein [Borrelia burgdorferi ZS7] gi|221192233|gb|EEE18453.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 72a] gi|224513565|gb|EEF83922.1| flagellar hook-basal body complex protein [Borrelia burgdorferi CA-11.2a] gi|225369444|gb|EEG98896.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 118a] Length = 282 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L TV++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|167579488|ref|ZP_02372362.1| flagellar hook protein FlgE [Burkholderia thailandensis TXDOH] Length = 413 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +TVGF+ +FS+ V A+ N I + +AS Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIG-TMLASV 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 ++ S+ G+ S+ + L+ A+ G+ +F + + + +RDG F+ +G +V++ G Sbjct: 65 QQQFSQ--GTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLNL 122 Query: 120 ------KYPVLDMA-SVPIQIPQKD 137 K V++ A +VP+Q P + Sbjct: 123 MGYQADKNGVINTAQTVPLQAPTNN 147 >gi|153001470|ref|YP_001367151.1| flagellar basal body rod protein FlgG [Shewanella baltica OS185] gi|151366088|gb|ABS09088.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS185] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GL AQ + ++ +++N++N TVG++ + F +++ N + Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSSSNTKLPNGLN 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I VA+ K + G+ ++T LD +EG +F ++ P G TR+G+F + D Sbjct: 68 IGAGTKVVATQKMFTQ---GNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQFTLDD 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G +V+ Y VL A I IP V +GEIS K A + F+ Sbjct: 125 TGQIVTPGSGY-VLQPA---ITIPDNATSITVSAEGEISVKTPGTADNQVVGQLTMTDFI 180 Query: 171 RRENSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 181 NP--SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|85715052|ref|ZP_01046037.1| hypothetical protein NB311A_11787 [Nitrobacter sp. Nb-311A] gi|85698249|gb|EAQ36121.1| hypothetical protein NB311A_11787 [Nitrobacter sp. Nb-311A] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 29/160 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGA----------IKN 50 G+AAQ E + +++N++N T G++ + F ++ VGA + Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASAQGTILPVGI 66 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 D+ + V + ++ +S+ G+ TG +LD A+ G+ +F + P G TRDG F++ Sbjct: 67 DLGGGVKTVGTPRQ-MSQ--GTLSQTGNDLDIAIRGEGFFKILMPDGTFQYTRDGTFQMD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 + G +V+A G PV I IPQ + +G++S Sbjct: 124 NQGRIVNAQGN-PVQPT----ITIPQNSAGITINSQGQVS 158 >gi|71280733|ref|YP_268222.1| flagellar hook protein FlgE [Colwellia psychrerythraea 34H] gi|71146473|gb|AAZ26946.1| flagellar hook protein FlgE [Colwellia psychrerythraea 34H] Length = 554 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 31/200 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L ++N++N +TVGF+ + +F +V + S +A+GK Sbjct: 2 SFNIALSGLNAAQKDLDVSSNNIANVNTVGFKESRAEFVDVYAS---------SLLAAGK 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVT 109 + V GS T LD A+ G+ +FA G + TR G+FK+ Sbjct: 53 TKVGDGVLTADVAQQFSQGSIQFTNNALDLAITGNGFFATVPELGSLETSYTRAGQFKLN 112 Query: 110 DDGSLVSASG----KYPV-LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 D +V++ G +PV D +S + + + I E G ++ +V M L + Sbjct: 113 SDNFVVNSQGGHLLGFPVNPDGSSASVSLSTAEPIRIPTESGTPTKTSEVDVRMNLPA-- 170 Query: 165 MSQGFVRRENSGISPNIPPT 184 G++ + P P T Sbjct: 171 -GAGYITSAPANFDPEDPLT 189 >gi|317492427|ref|ZP_07950856.1| flagellar basal-body rod protein FlgF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919766|gb|EFV41096.1| flagellar basal-body rod protein FlgF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 251 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 8/144 (5%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA LEQ+ T A+NM+N T GFR V ++ D + + VA+ Sbjct: 11 AASQTLEQQAIT-ANNMANASTPGFRAQLAALRAV--PVEGDSIETRTLVAASTPMHDMS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 +G T LD AL+ D W A+ + G TR+G ++ G L S G + D + Sbjct: 68 MGKLDYTERPLDVALQQDGWLAVRNADGTEAYTRNGNLQINTAGQLTS-QGNLVIGD--N 124 Query: 129 VPIQIPQKDEIFNVGEKGEISQKG 152 PI IP + EI + G I+ G Sbjct: 125 GPIAIPDRAEI-TIAADGTITALG 147 >gi|168335333|ref|ZP_02693429.1| hypothetical protein Epulo_09785 [Epulopiscium sp. 'N.t. morphotype B'] Length = 270 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 46/242 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------------EVVGAIKNDIDQ 54 G+ +Q + + T+++N++N +TVGF+ V F E + + Sbjct: 11 GMTSQ---QTHVDTISNNIANVNTVGFKQESVNFKTLLYQNMLPTQQEETTNPMLLQMGH 67 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV--TDDG 112 + + K + G+ I T D A++G +FA+++ + TRDG FKV T DG Sbjct: 68 GVRVGSISKNF---GTGNLIQTNAPTDLAIDGTGFFAVQADNQVSYTRDGSFKVTTTSDG 124 Query: 113 --SLVSASGKYPVLDMASVPIQIPQK--------DEIFNVGEKGEISQKGKVIATMGLYS 162 +LV++ G Y VL S PI + + VG K S+ G+ I + Sbjct: 125 VIALVTSDGHY-VLSTDSEPITFDENVLSSQITINSYGGVGYKD--SETGEDINIADIMV 181 Query: 163 VDMSQG----------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 V + FV SG+ P L+ ++ G+LE SN N EM Sbjct: 182 VQFANAAGLEATGDNLFVETAGSGVPLMESEXP--TLTKSLLRAGYLEGSNVNIATEMVN 239 Query: 213 MI 214 +I Sbjct: 240 LI 241 >gi|119775448|ref|YP_928188.1| flagellar basal body rod protein FlgG [Shewanella amazonensis SB2B] gi|119767948|gb|ABM00519.1| flagellar basal-body rod protein FlgG [Shewanella amazonensis SB2B] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + ++ +++N++N TVG++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNALDMMIEGPGFFEIQLPDGTTAYTRNGQFSLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y VL A I IP V +GE+S K A + F+ Sbjct: 128 IVTPGSGY-VLQPA---ITIPDNATSITVSAEGEVSVKTPGAAESQIVGQLTLSDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPIGQNLYLETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|188590007|ref|YP_001920227.1| flagellar basal body rod protein FlgG [Clostridium botulinum E3 str. Alaska E43] gi|188500288|gb|ACD53424.1| flagellar hook-basal body complex protein [Clostridium botulinum E3 str. Alaska E43] Length = 257 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV----LDM 126 G+F +T + DF ++G +FA++ + TR G FK+ G L++ +G Y + Sbjct: 84 GAFKATDSYTDFGIDGRGFFAVQRGNERLFTRSGDFKIDQQGYLITGNGDYVLGRNNATG 143 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 A PI + KDE G S G+ +T L + D + + E G + P+ Sbjct: 144 AEEPIYVG-KDEFSLDGNNKLQSATGE--STYTLLTADF-EDYKSLEKLGDNYYSANNPI 199 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + V V++G LE SN N E+ +++ + ++F + + ++++ +A I S Sbjct: 200 YN-AVVNVRQGVLETSNVNPTEELVKLMEIKRQFETNQKFVSMQDETVQKAANEIGS 255 >gi|325274798|ref|ZP_08140826.1| flagellar basal body rod protein FlgF [Pseudomonas sp. TJI-51] gi|324100066|gb|EGB97884.1| flagellar basal body rod protein FlgF [Pseudomonas sp. TJI-51] Length = 246 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 42/232 (18%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q AL Q+ A+N++N T GF + D++Q S G + ++ Sbjct: 12 ASQNALAQKAH--ANNLANVSTNGF--------------QRDLEQARSMPVFGDSFPARA 55 Query: 70 V------------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G + TG +LD A+ G+ + A+++P G R G + G L + Sbjct: 56 FAMTERPATDFTQGPLVETGRDLDVAVTGNGFIAVQAPDGSEAYVRTGSLNIDALGVLRA 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIA---TMGLYSVDMSQG 168 +G PV+ PI +P + ++ VG G +S + +VIA + L + D+ Sbjct: 116 GNG-MPVIGNGG-PIAVPPEQKV-EVGADGTLSIRSMGEDPRVIAEVDRIKLVNPDIKG- 171 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +++ G+ P + V V GFLE SN N++ EM ++ L+++F Sbjct: 172 -LKKGLDGLIHTTSGQPADADVNVRVVSGFLEGSNVNAVEEMTSVLALSRQF 222 >gi|256020229|ref|ZP_05434094.1| flagellar basal body rod protein FlgF [Shigella sp. D9] gi|260853467|ref|YP_003227358.1| putative lateral flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|260866414|ref|YP_003232816.1| putative lateral flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|332281391|ref|ZP_08393804.1| lateral flagellar rod protein [Shigella sp. D9] gi|257752116|dbj|BAI23618.1| predicted lateral flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|257762770|dbj|BAI34265.1| predicted lateral flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|323158102|gb|EFZ44201.1| flagellar basal-body rod protein FlgF [Escherichia coli EPECa14] gi|323178493|gb|EFZ64071.1| flagellar basal-body rod protein FlgF [Escherichia coli 1180] gi|323181548|gb|EFZ66968.1| flagellar basal-body rod protein FlgF [Escherichia coli 1357] gi|332103743|gb|EGJ07089.1| lateral flagellar rod protein [Shigella sp. D9] Length = 245 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRAD-------MAMATND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLEKNA 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|238755323|ref|ZP_04616666.1| Flagellar basal-body rod protein flgF [Yersinia ruckeri ATCC 29473] gi|238706459|gb|EEP98833.1| Flagellar basal-body rod protein flgF [Yersinia ruckeri ATCC 29473] Length = 251 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 25/240 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA+ LEQ+ T A+N++N T GFR V I + V + Sbjct: 11 AARQTLEQQAVT-ANNLANASTPGFRAQLSALRAV--PIDGPSMATRTLVTASTPGADMS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G +G LD AL+ D + A++ P G TR+G +V +G + YP++ + Sbjct: 68 QGPMNFSGRPLDVALQQDGFMAVQLPDGTEAYTRNGNIQVAANGQMTVQG--YPLMG-DN 124 Query: 129 VPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGF-VRRENSGISPNIP 182 PI +P + E+ + G IS IA +G + +QG + R + G+ ++ Sbjct: 125 GPIDVPPQAEV-TIAADGTISALNAGDPPNTIAQIGRLKLVQAQGNELNRGDDGLF-HLT 182 Query: 183 PTPLEDLSG-------VTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 P L+ V V G LE SN + M MI ++F + +DENE+ Sbjct: 183 PAALQQRGATLPNDPLVKVMPGVLEGSNVKPVETMVDMIANARRFEMQMKVIHSVDENEQ 242 >gi|54307271|ref|YP_128291.1| FlgF flagellar basal-body rod protein [Photobacterium profundum SS9] gi|46911691|emb|CAG18489.1| Hypothetical FlgF flagellar basal-body rod protein [Photobacterium profundum SS9] Length = 244 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 28/224 (12%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+++ + Q++ A+N++N +T GFR ++ +E V A+K + + + VA+ Sbjct: 12 ASRVMMAQQVH--ANNLANVNTAGFRA-DIEQAESV-AVKGNGFETRTLVAARAGGTDFS 67 Query: 70 VGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ T D A+ GD +FA+E+ TR G F + +G+L+ G PVL Sbjct: 68 HGALQHTDNPFDMAIRGDGFFAVEAGDNDEAYTRTGNFHLDAEGTLLL--GDRPVLSTGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ------GFVRRENSG 176 PI IP+ ++ ++G G IS + + + L D++ G R G Sbjct: 126 -PIVIPEYQQL-DIGADGTISIVPLGSSLVQEVGQLKLVKPDLANLHKSEDGLFRVAGQG 183 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 E VTV G++E SN N++ M + L++ F Sbjct: 184 -------GQAEADENVTVASGYIETSNVNAVESMINNMSLSRNF 220 >gi|146293688|ref|YP_001184112.1| flagellar basal body rod protein FlgG [Shewanella putrefaciens CN-32] gi|145565378|gb|ABP76313.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] gi|319427087|gb|ADV55161.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens 200] Length = 262 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + ++ +++N++N TVG++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTTAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y VL A I IP+ V +GE+S K A + F+ Sbjct: 128 IVTPGSGY-VLQPA---ITIPEDATSITVSAEGEVSVKTAGAAENQVVGQLSMTDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|172057880|ref|YP_001814340.1| hypothetical protein Exig_1871 [Exiguobacterium sibiricum 255-15] gi|171990401|gb|ACB61323.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sibiricum 255-15] Length = 278 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 26/175 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----------AIK 49 M S G++ + +L V +N++N +T G++ +V F ++V + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVVGNNIANVNTFGYKKGRVTFKDLVSQSVGSASGNGGGVG 60 Query: 50 NDIDQKISFVASGKEYLS-KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 +++ AS S G+ +TG LD A+ G+ +F +++ GI R G F Sbjct: 61 GANPKQVGLGASMATVDSVSNQGALQNTGRTLDVAISGEGFFQIQTADGIRYARSGNFYT 120 Query: 109 TDDGSLVSASGKYPV-------LDMASVP-------IQIPQKDEIFNVGEKGEIS 149 DG+LV+ G Y + L ++P I IP + ++G+ G ++ Sbjct: 121 DLDGNLVTGDGNYVIGSDNAGPLGQPTIPLGGGYKTINIPANAQNLSIGKDGLVT 175 >gi|254516989|ref|ZP_05129047.1| flagellar hook protein FlgE [gamma proteobacterium NOR5-3] gi|219674494|gb|EED30862.1| flagellar hook protein FlgE [gamma proteobacterium NOR5-3] Length = 429 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +F+ ++ A L +++N++N+ T GF+ + +F++V +GA N I + +S Sbjct: 2 AFSTAISGINAATADLGVISNNIANSSTTGFKASRAEFADVYATSLLGAGSNAIGKGVSL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +E+ G+ T LD A+ G+ +F L I TR G F+V +G LVS Sbjct: 62 AGVTQEFGQ---GNITFTNNSLDLAINGNGFFQLSVEGAIEYTRAGNFQVDREGFLVS 116 >gi|114046840|ref|YP_737390.1| flagellar basal body rod protein FlgG [Shewanella sp. MR-7] gi|113888282|gb|ABI42333.1| flagellar basal-body rod protein FlgG [Shewanella sp. MR-7] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + ++ +++N++N TVG++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y VL A I IP+ V +GE+S K A + F+ Sbjct: 128 IVTPGSGY-VLQPA---ITIPEDATSITVSAEGEVSVKTPGAAENQVVGQLSMSDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|297570291|ref|YP_003691635.1| flagellar basal-body rod protein FlgG [Desulfurivibrio alkaliphilus AHT2] gi|296926206|gb|ADH87016.1| flagellar basal-body rod protein FlgG [Desulfurivibrio alkaliphilus AHT2] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 35/228 (15%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFVASGK 63 +L T+++N++N +T GF+ +V+F ++ G + + I + +A+ Sbjct: 18 QLDTISNNLANVNTAGFKKSRVQFEDLYYQEMRAVGVETVDGGQVPSGIQVGLGVIATST 77 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + L + GS TG +LD A+EG +F + TR G F DG +V+ +G Sbjct: 78 QKLFTQ-GSIHETGNDLDLAVEGRGFFQVIRDGEEFYTRSGNFTRDADGFIVTQNG---- 132 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKG---KVIA--TMGLYSVDMSQGFVRRENSGI- 177 D IP +VG G I K ++IA + L++ ++ G +R E + Sbjct: 133 -DRLQPEFAIPADTVTLSVGTDGLIQAKNAAQEIIAEGQLTLHNF-INPGGLRAEGGNLF 190 Query: 178 SPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 P I P D +GV ++ F+E SN + E+ +I +TQ+ Sbjct: 191 RPTEASGDPIESDPGTDGAGVILQN-FIEVSNVDVTEELVNLI-ITQR 236 >gi|239834442|ref|ZP_04682770.1| flagellar basal body rod protein FlgG [Ochrobactrum intermedium LMG 3301] gi|239822505|gb|EEQ94074.1| flagellar basal body rod protein FlgG [Ochrobactrum intermedium LMG 3301] Length = 226 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 31/169 (18%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 GSF TG D AL G WF ++SP G + TR G F DG LV+ G PV ++ Sbjct: 48 GSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNPDGQLVTLDGN-PVEPAITI 106 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ----------------GFVR 171 P P E+ I+ G+V A + + VD+ Q G + Sbjct: 107 P---PDAIEV-------TITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGLEPLGGNLY 156 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 RE + P + G ++K+G+LE SN + + E+ +I + + Sbjct: 157 RETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITAQRAY 204 >gi|229825258|ref|ZP_04451327.1| hypothetical protein GCWU000182_00611 [Abiotrophia defectiva ATCC 49176] gi|229790630|gb|EEP26744.1| hypothetical protein GCWU000182_00611 [Abiotrophia defectiva ATCC 49176] Length = 274 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/268 (23%), Positives = 111/268 (41%), Gaps = 47/268 (17%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-- 70 +A + L T+++N++N +T GF+T ++F K+ + Q++ ++ E K + Sbjct: 13 MAQQVNLDTISNNIANINTTGFKTQSMEF-------KSLLYQQLKTKSTDSEGNPKPIGV 65 Query: 71 -----------------GSFISTGTELDFALEGDAWFALESPRGIILTRDGR--FKVTDD 111 G+ + TG LD ++G+ +FA++ TR+G F D Sbjct: 66 QVGLGVRNASITAKFTQGAALDTGEMLDLFIQGNGFFAVKVGEKTAYTRNGHMVFSSVAD 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQK------------DEIFNVGEKGEISQKGKVIATMG 159 G ++ S P+L PI+I K + + V +K + K + Sbjct: 126 GWELTTSDGNPILSTKGTPIKIDSKWDPKDISIDLSGNVLHRVDDKEAGTTKYDNFGKIA 185 Query: 160 LYSVDMSQGFVRRENSGI--SPNIPPTPLED----LSGVTVKRGFLEDSNANSMYEMGQM 213 LY + G R S +P ED L+ +K G+LE SN ++ EM M Sbjct: 186 LYQFNNPAGLNRSGGSLYYETPASGEARSEDTDAGLNKSLIKSGYLEGSNVSAADEMVNM 245 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I +TQ+ + + MLE N+ Sbjct: 246 I-VTQRAYQLNSKAITASDEMLEQANNL 272 >gi|205373385|ref|ZP_03226189.1| flagellar hook protein FlgE [Bacillus coahuilensis m4-4] Length = 426 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAI---KNDIDQKISFV 59 G++ + +L + +N++N +T GF+ +V F +++ GA +N Q + Sbjct: 8 GISGMKNAQTKLDVIGNNIANVNTYGFKKGRVTFQDLMNQTMSGATTPTENRGGQNAKQI 67 Query: 60 ASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 G S ++ GS +TG LD A+ GD +F + + + + TR G F + +GSLV Sbjct: 68 GLGGTIASIDIISTQGSLQTTGRSLDVAISGDGYFVVRNGQNEMYTRAGNFYLDSNGSLV 127 Query: 116 SASGK 120 +G Sbjct: 128 DGNGN 132 >gi|254255087|ref|ZP_04948404.1| Flagellar hook protein FlgE [Burkholderia dolosa AUO158] gi|124899732|gb|EAY71575.1| Flagellar hook protein FlgE [Burkholderia dolosa AUO158] Length = 419 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 8/119 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-VVGAIKNDIDQKISFVASG 62 SFNI L+ A+ +L ++ N++N T G++ + FS +G+ + V S Sbjct: 30 SFNIALSGIKAINGQLGEISQNIANAGTYGYKAGRANFSAFYLGSTPGGV-----MVGST 84 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + ++ GS +STG+ +D AL G+ +F G ++ +R GRF G+++ G+ Sbjct: 85 SQAMNV-AGSLVSTGSGMDAALPGNGFFVTRDANGALVYSRVGRFGTDQHGNVIDYMGR 142 >gi|115353118|ref|YP_774957.1| flagellar hook protein FlgE [Burkholderia ambifaria AMMD] gi|115283106|gb|ABI88623.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria AMMD] Length = 413 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 73/141 (51%), Gaps = 16/141 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I ++S + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALSSVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---- 119 + + G+ +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 66 QQFGQ--GTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGLNLM 123 Query: 120 -----KYPVLDMA-SVPIQIP 134 K V++ A +VP+Q P Sbjct: 124 GYLADKNGVVNTAQTVPLQAP 144 >gi|294853175|ref|ZP_06793847.1| flagellar basal-body rod protein FlgG [Brucella sp. NVSL 07-0026] gi|294818830|gb|EFG35830.1| flagellar basal-body rod protein FlgG [Brucella sp. NVSL 07-0026] Length = 210 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 31/169 (18%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 GSF TG D AL G WF ++SP G + TR G F DG LV+ G PV ++ Sbjct: 32 GSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQLVTLDGN-PVEPAITI 90 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATM--GLYSVDMSQ----------------GFVR 171 P P E+ I+ G+V A + + VD+ Q G + Sbjct: 91 P---PDAIEV-------TITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGLEPLGGNLY 140 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 RE + P + G ++K+G+LE SN + + E+ +I + + Sbjct: 141 RETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITAQRAY 188 >gi|307945666|ref|ZP_07661002.1| flagellar basal-body rod protein FlgG [Roseibium sp. TrichSKD4] gi|307771539|gb|EFO30764.1| flagellar basal-body rod protein FlgG [Roseibium sp. TrichSKD4] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/246 (23%), Positives = 110/246 (44%), Gaps = 38/246 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF----- 58 + +I A E+ + +++N++N T G++ +V F +++ + S Sbjct: 3 ALHIAATGMKAQERNVEVISNNVANLRTTGYKRQRVDFQDLMYQNLRRAGSETSTAGTIV 62 Query: 59 -----------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 VA+ +S+ G+ TG +LD A+ G+ +F +E P G TRDG F Sbjct: 63 PTGVQIGSGVKVAATSRIMSQ--GAVEQTGKDLDLAVRGEGFFQIEMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 + +G+LV+ G Y V VP I IP+ + G +S AT+ L + + Sbjct: 121 ERDPNGTLVTVDG-YTV-----VPGITIPEDSRNITISTDGTVSAVDAGGATVNLGQIQL 174 Query: 166 SQGFVRREN-SGISPNI-------PPTPLEDLSGV---TVKRGFLEDSNANSMYEMGQMI 214 ++ FV + I N+ P +++ G V++ FLE +N +++ E+ +I Sbjct: 175 AR-FVNKAGLEAIGDNLFYETEASGPAQVDNPGGNGFGNVQQYFLEMANVDAVTEIADLI 233 Query: 215 HLTQKF 220 + + Sbjct: 234 SAQRAY 239 >gi|85712255|ref|ZP_01043306.1| Flagella basal body rod protein [Idiomarina baltica OS145] gi|85693882|gb|EAQ31829.1| Flagella basal body rod protein [Idiomarina baltica OS145] Length = 247 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 43/225 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-------- 70 +S A+N++NT+T GF K D++Q S A G E L V Sbjct: 19 VSVRANNLANTNTTGF--------------KADLEQARSMQAFG-EGLPTRVFSMTESPG 63 Query: 71 -----GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G +TG LD A+ G W A++ G TR+G ++ G L ++SG PV+ Sbjct: 64 QNFAEGPIRTTGRNLDVAINGQGWIAVQDANGNERYTRNGSLEIDAGGMLRTSSGD-PVM 122 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK--------GKVIATMGLYSVDMSQGFVRRENSG 176 A P+ IP + +G G IS + +++ + L + ++ V + G Sbjct: 123 GDAG-PVLIPMPIDSLTIGRNGNISIRPQGAPEDANEIVDRIKLVNPPLNN--VEKTTDG 179 Query: 177 -ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + L D + V ++ G LE SN N++ EM MI L +++ Sbjct: 180 YFALKDGQQALAD-ANVKLEVGALEGSNVNAIGEMTSMIALQRQY 223 >gi|332305615|ref|YP_004433466.1| flagellar hook-basal body protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172944|gb|AEE22198.1| flagellar hook-basal body protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 460 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 29/139 (20%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L T A+N++N +TVGF+ + +F +V + S +A GK Sbjct: 2 SFNIALSGVSAAQRDLDTTANNIANVNTVGFKESRAEFGDVYAS---------SLLAGGK 52 Query: 64 E-----YLSKEV------GSFISTGTELDFALEGDAWFA----LESPRGIILTRDGRFKV 108 +++EV GS T LD A+ G+ +FA ++S R TR G FK+ Sbjct: 53 TKVGDGVITQEVAQQFSQGSLQFTNNSLDLAVTGNGFFATIPEIDS-REFSFTRAGMFKL 111 Query: 109 TDDGSLVSASGK----YPV 123 + +V+++G +PV Sbjct: 112 DAENFVVNSNGDNLLGFPV 130 >gi|197104381|ref|YP_002129758.1| flagellar basal-body rod protein FlgG [Phenylobacterium zucineum HLK1] gi|196477801|gb|ACG77329.1| flagellar basal-body rod protein FlgG [Phenylobacterium zucineum HLK1] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 36/234 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G+AAQ + + +++N++N +TV F+ + +F +++ G I Sbjct: 10 GMAAQ---QLNVEVISNNIANMNTVAFKRQRAEFQDLLYQTFEAAGVQSSDQGTIVPTGV 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 Q + V +G Y G+ T +LD A++G +F + P G TR G V D G Sbjct: 67 QVGAGVKAGSVYRIATQGTLTRTENKLDMAIDGRGFFQVLLPSGETAYTRAGNLSVNDQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIATM-GLYSVD--MSQ 167 LV+ G YP+ I IPQ + + G +++Q G+ T+ G + +++ Sbjct: 127 QLVTQDG-YPI----EPGITIPQDAVDVAISKSGQVQVTQAGQTAPTIVGQLELATFLNE 181 Query: 168 GFVRRENSGI----SPNIPPT---PLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ + S + + + PPT P E+ G ++ G+ E SN +++ E+ +I Sbjct: 182 GGLQAQGSNLFKETAASGPPTNGIPGENGVGELIQ-GYTEASNVDAVAEITALI 234 >gi|117919774|ref|YP_868966.1| flagellar basal body rod protein FlgG [Shewanella sp. ANA-3] gi|117612106|gb|ABK47560.1| flagellar basal-body rod protein FlgG [Shewanella sp. ANA-3] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + ++ +++N++N TVG++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y VL A I IP+ V +GE+S K A + F+ Sbjct: 128 IVTPGSGY-VLQPA---ITIPEDATSITVSAEGEVSVKTPGAAENQVVGQLSMTDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|310816831|ref|YP_003964795.1| flagellar basal-body rod protein FlgG [Ketogulonicigenium vulgare Y25] gi|308755566|gb|ADO43495.1| flagellar basal-body rod protein FlgG [Ketogulonicigenium vulgare Y25] Length = 261 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 46/270 (17%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 +I LA + R+ +++N++N +T + + +F+++ + + + A+ Sbjct: 4 LDIAATGMLAQQTRVEVISNNLANMNTTAYNPRRAEFADL---HYQQVQRAGTVAATDGT 60 Query: 65 YLSKEV-----------------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 L + G+ TG LD A+EG +F + P G I TRDG Sbjct: 61 ILPTGIQLGMGVRTTAVSPMLGQGAVQETGGSLDVAIEGQGYFEVALPDGRIGYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----------GKVIA 156 K+T DG +V+A G L++A I IP+ + + GE+ G++ Sbjct: 121 KLTGDGLIVTAGG----LEVAP-GIVIPEDAQSVAINADGEVYASFTNAVEQEFLGQLNL 175 Query: 157 TM-----GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 M GL ++ S ++ SG P + P ED G T+++G+LE S +++ E+ Sbjct: 176 AMFVNPRGLEAMG-SNLYLETAASG-QPMV-AVPGEDGLG-TLRQGYLEQSTVDAVREVT 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + + +I ++ ML A+ I Sbjct: 232 DLIAAQRGYELNSKVISAADQ-MLAAMVQI 260 >gi|293408368|ref|ZP_06652207.1| conserved hypothetical protein [Escherichia coli B354] gi|291471546|gb|EFF14029.1| conserved hypothetical protein [Escherichia coli B354] Length = 245 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRADMAMAT-------ND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNG 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|330445348|ref|ZP_08309000.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489539|dbj|GAA03497.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 467 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 S NI L+ A ++ L+T ++N++N +T GF+ + +F +V + N V + Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTDDGSLVSA 117 GS I T LD + G +FA+ P LTR+G F + ++ LV++ Sbjct: 62 STVAQQFHEGSSIYTNNPLDLRVSGSGFFAVADNKNEPANNNLTRNGAFHLNNENELVNS 121 Query: 118 SGK----YPV 123 GK YPV Sbjct: 122 EGKFLLGYPV 131 >gi|88704305|ref|ZP_01102019.1| flagellar basal-body rod protein FlgF [Congregibacter litoralis KT71] gi|88701356|gb|EAQ98461.1| flagellar basal-body rod protein FlgF [Congregibacter litoralis KT71] Length = 251 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 28/181 (15%) Query: 69 EVGSFISTGTELDFALEGDAWFAL-----ESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 E G TG +LD A+ G+ WFA+ E G +TR G F++ + G LV+ +G+ Sbjct: 67 EQGVIEQTGRDLDLAINGEGWFAVQALTGEGNGGEGVTRRGDFRIDEFGQLVNGAGQ--A 124 Query: 124 LDMASVPIQIPQ-------KDEIFNVGEKGEISQKGKVIATMGLY---SVDMSQ---GFV 170 L PI +P D ++ GE+ V+ + + S D+S+ GF Sbjct: 125 LLGNDGPIALPPFSSLSIGSDGTVSIVPLGELPNAVAVLDRIKMVNPASEDLSKGEDGFF 184 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R ++ PTP + V + G LE SN N + M +MI L+++F L+ Sbjct: 185 RTDSD------LPTPAD--GNVRLVSGALESSNVNPVTAMVRMIELSRQFEHYVKLMKTA 236 Query: 231 E 231 E Sbjct: 237 E 237 >gi|95929874|ref|ZP_01312615.1| Flagellar basal-body rod FlgG [Desulfuromonas acetoxidans DSM 684] gi|95134170|gb|EAT15828.1| Flagellar basal-body rod FlgG [Desulfuromonas acetoxidans DSM 684] Length = 261 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 30/224 (13%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---------VASGKEYL 66 + + +A+N++N +T GF+ + F E++ + S V G Sbjct: 16 QTNIDVIANNLANVNTSGFKKSRADFQELLYQVSKTPGSSTSADTVSPTGIQVGLGSRTA 75 Query: 67 SKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKY 121 + + G + T ELD A+EG +F +E P G TR G K DG L ++ G Sbjct: 76 AVQKVFSTGDMMQTENELDLAIEGRGFFQVEMPDGTTAYTRSGALKKDGDGRLTTSEGY- 134 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIAT------MGLYSVDMSQGFVRRE 173 + + I IP+ ++G+ G ++ G+ +T M ++S + + R Sbjct: 135 ----LLTPQIVIPENTTSISIGQDGTVDVFLDGESTSTEIGVIEMAIFSNESGLRSLGRN 190 Query: 174 --NSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 +S + T + +G+ T+ +G+LE SN + M EM MI Sbjct: 191 LFAETLSSGVANTGIPGENGLGTLSQGYLEGSNVSVMEEMVNMI 234 >gi|157147101|ref|YP_001454420.1| flagellar basal body rod protein FlgF [Citrobacter koseri ATCC BAA-895] gi|157084306|gb|ABV13984.1| hypothetical protein CKO_02878 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 61/247 (24%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------------ 70 A+N++N +T GFR+ D+D IS +G+ Y S+ + Sbjct: 23 ANNLANVNTQGFRS--------------DLDNAISQQVNGEGYASRYMALPTQGGVDMTP 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ TG LD A++GD AL S + TR+G+ V+ +G L S +G PV + + P Sbjct: 69 GAVRETGRNLDIAIKGDGLIALASGNREVYTRNGQIDVSPEGDL-SING-LPV-EGDNGP 125 Query: 131 IQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSV--------DMSQ---GFVRRENSG 176 I +P + ++GE G I+ G + A + + + D+S+ GF+ N+ Sbjct: 126 IVLPPFSSV-SIGEDGVITIVPDDGDIAAPVDVDRIKLVNIPVSDLSKNVDGFL-VSNTA 183 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 I+P V V G LE +N +++ EM I L ++F E + M++ Sbjct: 184 INPRD--------EEVMVASGHLETANVSAINEMVASIALNRQF--------EAQIKMMK 227 Query: 237 AIRNIAS 243 A ++A+ Sbjct: 228 AAEDLAN 234 >gi|88704306|ref|ZP_01102020.1| Flagellar hook protein FlgE [Congregibacter litoralis KT71] gi|88701357|gb|EAQ98462.1| Flagellar hook protein FlgE [Congregibacter litoralis KT71] Length = 429 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 8/118 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +F+ ++ A L V++N++N T GF+ + +F++V +GA N I + +S Sbjct: 2 AFSTAISGINAATADLGVVSNNIANASTTGFKASRAEFADVYATSLLGAGSNAIGKGVSL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +E+ G+ T LD A+ G+ +F L + TR G F+V +G LVS Sbjct: 62 AGVTQEFGQ---GNITFTNNSLDLAINGNGFFQLSVEGAVEYTRAGNFQVDREGFLVS 116 >gi|283953937|ref|ZP_06371466.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] gi|283794542|gb|EFC33282.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] Length = 270 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ DA++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSNYFNNPQNAGIRIPNGAIQISVDKNGGIEVDGVQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL +++GF + SN N + EM Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVYKIDDLTRIRDLENSNAIRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|315637965|ref|ZP_07893151.1| flagellar basal-body rod protein [Campylobacter upsaliensis JV21] gi|315482000|gb|EFU72618.1| flagellar basal-body rod protein [Campylobacter upsaliensis JV21] Length = 270 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 38/253 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLEVITNNLANINTSGYKRDDVVIADFKRIFKETKDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV S ++Y GS +T LDFA+ D ++ +++ G + LT Sbjct: 61 TKDAARFVNSTIDRVPQISQDYTDFSTGSLKATNNPLDFAMTREDTFYLVQTKNGELRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI--------FNVGEKGEISQKGK 153 +DG F++ D+G LV+ G Y VL +S P+ I N + G IS G+ Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVL--SSNYFNNPEGAGIIIGNGAVHINADKNGNISVDGE 177 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANSMYEM-- 210 A + + VD + + ++ + T + DL +VK+GF + SN N + EM Sbjct: 178 DNARLFIAQVDDVRALEKDGDNTYKID-DLTRIRDLEISNSVKQGFSQGSNVNPVSEMVG 236 Query: 211 ----GQMIHLTQK 219 +M+ + QK Sbjct: 237 LIEANRMVEMYQK 249 >gi|161503733|ref|YP_001570845.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865080|gb|ABX21703.1| hypothetical protein SARI_01818 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALNITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + ++ ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YIETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|170722890|ref|YP_001750578.1| flagellar basal body rod protein FlgF [Pseudomonas putida W619] gi|169760893|gb|ACA74209.1| flagellar basal-body rod protein FlgF [Pseudomonas putida W619] Length = 248 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 50/236 (21%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q AL Q+ A+N++N T GF + D++Q S G + S+ Sbjct: 14 ASQNALAQKAH--ANNLANISTNGF--------------QRDLEQARSMPVFGDSFPSRA 57 Query: 70 V------------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G + TG +LD A+ G + A+++P G R G + G L + Sbjct: 58 FAMTERPATDFSEGPMVETGRDLDVAVAGQGFIAVQAPDGSEAYVRTGSLNIDALGVLRA 117 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-----LYSVDMSQGFVR 171 +G PV+ PI IP + ++ VG G IS I +MG + VD + V Sbjct: 118 GNG-MPVIGNGG-PIAIPPEQKV-EVGADGTIS-----IRSMGEDPRVMAEVDRIK-LVN 168 Query: 172 RENSGISPNI-------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G++ + P V V GFLE SN N++ EM ++ L+++F Sbjct: 169 PDTKGLTKGLDGLIHTTSGQPAAADVNVKVVSGFLEGSNVNAVEEMTSVLALSRQF 224 >gi|149189837|ref|ZP_01868117.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148836323|gb|EDL53280.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 243 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 31/213 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +VK + G+ D + + V + + G + TG L Sbjct: 23 SNNLSNADTAGFRADMERVKSIPLQGS---GFDGR-TMVVTNSAATRFDAGDVVKTGRAL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ G+ + ++++P G TR G KV + G++ S +G V D P+ +P+ ++ Sbjct: 79 DIAIMGEGYISVQTPTGNEAYTRAGNIKVDELGAM-SINGFAVVGDNG--PMVLPEFQKV 135 Query: 140 FNVGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 EIS++G+V + T+ L DM+Q +++E+ + ++ P Sbjct: 136 -------EISERGRVSVIPPGGGAEVEVGTLKLVKPDMNQ--LQKESDSLLHSLDGQPFA 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + +E SN +++ E+ ++ LT+ F Sbjct: 187 ADPTVNLAPEHIEGSNVSAIDELLSVMSLTRNF 219 >gi|326792665|ref|YP_004310486.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] gi|326543429|gb|ADZ85288.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] Length = 271 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 44/255 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KND-----------ID 53 G+ AQ + + T+++NM+N +T ++ F ++ ND + Sbjct: 11 GMTAQ---QLNVDTISNNMANVNTAAYKKETTNFKSLLYTTMGEANDPNAQTAPTVKQVG 67 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK---VT 109 + +A+ ++Y + G TG E D AL G+ +FA+ G + TRDG F+ + Sbjct: 68 HGVRALANSRDYTN---GILQETGNESDLALVGNGFFAIGQTDGSEVYTRDGSFRFAMIP 124 Query: 110 DDGS--LVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 D+GS LV+A G +PVL V +IP + +G+ G I + M + + Sbjct: 125 DEGSYALVTADG-HPVLSTEGESIVVGTEIPM--DKLEIGQDGNIYYLDETGLEMDVAQI 181 Query: 164 DMSQGFVRRENSGISPNI---------PPTPLED--LSGVTVKRGFLEDSNANSMYEMGQ 212 + Q R + N+ P ++D L+ T++ G+LE SN EM Sbjct: 182 RIVQFANRAGLEAVGDNLYKETPASGEPLAEVDDDGLTKTTIRTGYLEGSNVQIAQEMVN 241 Query: 213 MIHLTQKFNSITTLI 227 +I + + +T I Sbjct: 242 LIIAQRAYEINSTAI 256 >gi|212709494|ref|ZP_03317622.1| hypothetical protein PROVALCAL_00536 [Providencia alcalifaciens DSM 30120] gi|212687832|gb|EEB47360.1| hypothetical protein PROVALCAL_00536 [Providencia alcalifaciens DSM 30120] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---IDQKIS 57 GL AQ + L +++N++N T GF+ + F +++ GA+ ++ + + Sbjct: 11 GLDAQ---QTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNIRQPGAMSSEQTSLPSGLQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + + + G+ TGT D A++G + ++ P G TRDG + DG Sbjct: 68 MGTGARPVATVRIHSQGNLNKTGTTTDIAIKGQGFLHVQMPDGTDAYTRDGALQRNQDGQ 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS----------QKGKVIATM---- 158 LV++SG Y V VP I IP+ ++ G +S Q G++ T Sbjct: 128 LVTSSG-YQV-----VPAIMIPENANSLSIARDGTVSVTVYGDNQPQQIGQITLTTFIND 181 Query: 159 -GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL S M + S +PN P + +G+ + +G LE SN N E+ MI Sbjct: 182 AGLES--MGENLYMETASSGAPN-ESAPGTNGAGL-LYQGMLETSNVNVAEELVNMIQTQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|262404538|ref|ZP_06081093.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC586] gi|262349570|gb|EEY98708.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC586] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 27/159 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ + ++T+++N++N T+GF+ + F ++ +I+Q Sbjct: 11 GLDAQ---QTNIATISNNLANASTIGFKKGRAVFEDL---FYQNINQPGAQSSQNTRLPS 64 Query: 56 -ISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + A K +++V G+ +T LD +EGD +F + P G I +R+G+F + D Sbjct: 65 GLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLDD 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +G++V++ Y + I IP+ +G GE+S Sbjct: 125 EGAIVTSGSGYRL----QPEIVIPEDAISITIGNDGEVS 159 >gi|269103188|ref|ZP_06155885.1| flagellar basal-body rod protein FlgG [Photobacterium damselae subsp. damselae CIP 102761] gi|268163086|gb|EEZ41582.1| flagellar basal-body rod protein FlgG [Photobacterium damselae subsp. damselae CIP 102761] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 106/238 (44%), Gaps = 42/238 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKND--IDQKIS 57 GL AQ + +ST+++N++N TVGF+ + F ++ G D + + Sbjct: 11 GLDAQ---QTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQATQDSTLPTGLM 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K +++V G+ +T +D +EGD +F + P G + TR+G+F + +G Sbjct: 68 LGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQILLPDGNMGYTRNGQFTINAEGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATM--------- 158 LV+ Y V I +P+ VG GE+S Q+ +V+ + Sbjct: 128 LVTTGSGYVV----QPEIVVPEDAVGITVGTDGEVSARIRGQQENQVLGQLTTVDFINPG 183 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 GL + + F+ SG + P L G+ T+++ LE SN N E+ MI Sbjct: 184 GLEPIGQNL-FLPTGASGDAQEGTP----GLDGLGTIRQSMLETSNVNVTEELVNMIE 236 >gi|167034942|ref|YP_001670173.1| flagellar basal body rod protein FlgF [Pseudomonas putida GB-1] gi|166861430|gb|ABY99837.1| flagellar basal-body rod protein FlgF [Pseudomonas putida GB-1] Length = 246 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 50/236 (21%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q AL Q+ A+N++N T GF + D++Q S G + ++ Sbjct: 12 ASQNALAQKAH--ANNLANISTNGF--------------QRDLEQARSMPVFGDSFPARA 55 Query: 70 V------------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G + TG +LD A+ G + A+++P G R G + G L + Sbjct: 56 FAMTERPATDFSEGPLVETGRDLDVAVTGKGFIAVQAPDGSEAYVRTGSLNIDALGVLRA 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-----LYSVDMSQGFVR 171 +G PV+ PI IP + ++ VG G IS I +MG + VD + V Sbjct: 116 GNG-MPVMGNGG-PIAIPPEQKV-EVGADGTIS-----IRSMGEDPRVMAEVDRIK-LVN 166 Query: 172 RENSGISPNI-------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G++ + P + V V GFLE SN N++ EM ++ L+++F Sbjct: 167 PDTKGLTKGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQF 222 >gi|120598234|ref|YP_962808.1| flagellar basal body rod protein FlgG [Shewanella sp. W3-18-1] gi|120558327|gb|ABM24254.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + ++ +++N++N TVG++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y VL A I IP+ V +GE+S K A + F+ Sbjct: 128 IVTPGSGY-VLQPA---ITIPEDATSITVSAEGEVSVKTAGAAENQVVGQLSMTDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|57505521|ref|ZP_00371448.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57016068|gb|EAL52855.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 263 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 43/246 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S + +A + ++ ++N+SN +TVGF+ + +F++++ G + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNISNVNTVGFKKSRAEFADLMYQTMKYAGTSTSATT 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 S + G V GS+ ST T+ D A+EG+ +F ++ P G TR+G+ Sbjct: 61 LSPSGIEVGLGVRPTAVTKIFTPGSYKSTSTDSFDMAIEGNGFFQIQLPDGTTAYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNV---GEKGEISQKGKV--- 154 F ++G++V+A G Y ++ +VP I I KD +V GE+ E +Q G++ Sbjct: 121 FTRDNEGNVVNADG-YRLIPEMTVPEGATNISIA-KDGTVSVMLAGEQEE-TQIGQIELV 177 Query: 155 --IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMY 208 I GL+S+ +N + P+ ++G ++ GF+E SN + Sbjct: 178 QFINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGNIRHGFVELSNVQLVE 229 Query: 209 EMGQMI 214 EM +I Sbjct: 230 EMTDLI 235 >gi|222100886|ref|YP_002535454.1| hypothetical protein CTN_1912 [Thermotoga neapolitana DSM 4359] gi|221573276|gb|ACM24088.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359] Length = 759 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 18/154 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--------------SEVVG 46 M S G+ + + V +N+SN +TVGF+ +V F E VG Sbjct: 2 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRAPQESVG 61 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 S VAS + +++ GSF +TG + D A++GD +F + TR G F Sbjct: 62 GTNPMQIGLGSQVASIDKIMTQ--GSFQNTGVKTDLAIQGDGFFIVSDGNAYYYTRAGAF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF 140 + +G+L+ S Y V +V Q P+ E + Sbjct: 120 TLDSNGNLIQTSTGYKVQGWTAV--QDPETGERY 151 >gi|154174905|ref|YP_001408076.1| flagellar basal body rod protein FlgG [Campylobacter curvus 525.92] gi|112802860|gb|EAU00204.1| flagellar basal-body rod protein FlgG [Campylobacter curvus 525.92] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/266 (22%), Positives = 119/266 (44%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDID 53 M S +A + ++ ++N++N +T G++ + +F+ E G + Sbjct: 1 MMRSLYTAATGMIAQQTQIDVTSNNIANVNTYGYKKNRAEFADLMYQVMEYAGTATSQTT 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + G + G F T LD + G+ +F L+ P G TR+G F Sbjct: 61 TSPTGIEVGLGVRPTAINKIFSQGYFKETSNNLDMVIAGNGFFQLQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGE--ISQKGKV-----I 155 K+ +G++V++ G Y ++ VP Q D +V + GE ++Q G++ I Sbjct: 121 KLDSNGTIVNSDG-YQLIPQIVVPANATQISIGTDGTVSVLQAGETNMAQIGQIQIANFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL+S+ ++ SG + + L+ L T+++GF+E SN + EM +I Sbjct: 180 NPAGLHSMG-DNNYLETAASGDAV-VGVAGLDGLG--TIRQGFVEMSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ SMLE + + Sbjct: 236 GQRAYEANSKAITTSD-SMLEIVNGL 260 >gi|188495566|ref|ZP_03002836.1| flagellar basal-body rod protein FlgF [Escherichia coli 53638] gi|188490765|gb|EDU65868.1| flagellar basal-body rod protein FlgF [Escherichia coli 53638] Length = 245 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRAD-------MAMATND---KVKGSGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|315637964|ref|ZP_07893150.1| flagellar basal-body rod protein FlgG [Campylobacter upsaliensis JV21] gi|315481999|gb|EFU72617.1| flagellar basal-body rod protein FlgG [Campylobacter upsaliensis JV21] Length = 263 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 43/246 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S + +A + ++ ++N+SN +TVGF+ + +F++++ G + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNISNVNTVGFKKSRAEFADLMYQTMKYAGTSTSATT 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 S + G V GS+ ST T+ D A+EG+ +F ++ P G TR+G+ Sbjct: 61 LSPSGIEVGLGVRPTAVTKVFTPGSYKSTSTDSFDMAIEGNGFFQIQLPDGTTAYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNV---GEKGEISQKGKV--- 154 F ++G++V+A G Y ++ +VP I I KD +V GE+ E +Q G++ Sbjct: 121 FTRDNEGNVVNADG-YRLIPEMTVPEGATNISIA-KDGTVSVMLAGEQEE-TQIGQIELV 177 Query: 155 --IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMY 208 I GL+S+ +N + P+ ++G ++ GF+E SN + Sbjct: 178 QFINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGNIRHGFVELSNVQLVE 229 Query: 209 EMGQMI 214 EM +I Sbjct: 230 EMTDLI 235 >gi|239828563|ref|YP_002951187.1| flagellar basal body rod protein [Geobacillus sp. WCH70] gi|239808856|gb|ACS25921.1| flagellar basal body rod protein [Geobacillus sp. WCH70] Length = 278 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 47/281 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F + +A ++R+ +N++N +T G+++ + + + +D+ Sbjct: 1 MLRGFYTAASGMMAQQRRIEMWTNNIANANTPGYKSDQAALRAFPELLLSRLDKATVPTK 60 Query: 61 SGKEY-LSKEVGSFIS------------------TGTELDFAL-------------EGDA 88 + + + L +GS + TG D AL EG Sbjct: 61 TPRSFPLQPTIGSINTGVYMQELIPNFRQGDIKETGQPTDIALINGTLPVDAETGKEGTL 120 Query: 89 WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +F +++ G I TR+G F + G L + G Y VLD IQ+P + F V G Sbjct: 121 FFIVQNENGDIRYTRNGNFTLNPQGFLTTNDGWY-VLDENGRRIQLPSTN--FAVNADGT 177 Query: 148 ISQKGKVIATMGLYS-------VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLE 200 I IA + + V G R EN G+ P+ P +++ T+K+GFLE Sbjct: 178 IVANNTRIARINIAFAANPNTLVKEGNGLFRSEN-GVLPSALGNP--NIT-YTLKQGFLE 233 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +N + M +M+ + F + ++ ++SM +A+ I Sbjct: 234 RANVDLNRAMTEMLSAYRAFEANQKIVQAYDRSMDKAVNEI 274 >gi|316932823|ref|YP_004107805.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris DX-1] gi|315600537|gb|ADU43072.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris DX-1] Length = 262 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 25/158 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------I 52 G+AAQ E + +++N++N T GF+ +F ++ VGA +D + Sbjct: 10 GMAAQ---ELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTILPVGV 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 D G L + G+ TG +LD A+ G+ +F ++ P G TRDG F + Sbjct: 67 DIGGGVKTVGTPRLMTQ-GTLSPTGNDLDMAVRGEGFFKIQMPDGTFAYTRDGSFTTDNT 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G +V+A G PV I IP V G++S Sbjct: 126 GRIVTAGGN-PVQPT----ITIPNGATSITVATNGQVS 158 >gi|317154735|ref|YP_004122783.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316944986|gb|ADU64037.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 554 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKIS 57 + +S G+ +R++ + +N++N +TVGF+ ++F +++ A N + Q Sbjct: 3 LGSSLYAGITGLTVHSERMTVIGNNLANVNTVGFKGTWMQFEDLLSQDFATVNGVGQIGR 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSL 114 V Y GSF S+ D A+ GD F L SP+G+ +R G F+ +DG L Sbjct: 63 GVRVSTIYSDFGQGSFESSTEATDVAISGDGMFVL-SPKGLDSKFYSRAGNFRFDNDGYL 121 Query: 115 VSASG 119 V G Sbjct: 122 VDPHG 126 >gi|205353083|ref|YP_002226884.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272864|emb|CAR37793.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628163|gb|EGE34506.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 260 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + ++ ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YIETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|39936961|ref|NP_949237.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris CGA009] gi|192292789|ref|YP_001993394.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris TIE-1] gi|39650818|emb|CAE29341.1| putative flagellar basal-body rod protein flgg (distal rod protein) [Rhodopseudomonas palustris CGA009] gi|192286538|gb|ACF02919.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris TIE-1] Length = 262 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 21/139 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------I 52 G+AAQ E + +++N++N T GF+ +F ++ VGA +D + Sbjct: 10 GMAAQ---ELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGTILPVGV 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 D G L + G+ TG +LD A+ G+ +F ++ P G TRDG F + Sbjct: 67 DIGGGVKTVGTPRLMTQ-GTLSPTGNDLDLAVRGEGFFKIQMPDGTFAYTRDGSFTKDNT 125 Query: 112 GSLVSASGKYPVLDMASVP 130 G +V+A+G PV +VP Sbjct: 126 GRMVTANGN-PVQPTITVP 143 >gi|109899402|ref|YP_662657.1| flagellar hook protein FlgE [Pseudoalteromonas atlantica T6c] gi|109701683|gb|ABG41603.1| flagellar basal body FlaE [Pseudoalteromonas atlantica T6c] Length = 458 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 29/139 (20%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L T A+N++N +TVGF+ + +F +V + S +A GK Sbjct: 2 SFNIALSGVSAAQRDLDTTANNIANVNTVGFKESRAEFGDVYAS---------SLLAGGK 52 Query: 64 E-----YLSKEV------GSFISTGTELDFALEGDAWFA----LESPRGIILTRDGRFKV 108 +++EV GS T LD A+ G+ +FA ++S R TR G FK+ Sbjct: 53 TKVGDGVITQEVAQQFSQGSLQFTNNSLDLAVTGNGFFATIPEIDS-REFSFTRAGMFKL 111 Query: 109 TDDGSLVSASGK----YPV 123 + +V+++G +PV Sbjct: 112 DAENFVVNSNGDNLLGFPV 130 >gi|149184209|ref|ZP_01862527.1| Flagellar basal-body rod FlgG [Erythrobacter sp. SD-21] gi|148831529|gb|EDL49962.1| Flagellar basal-body rod FlgG [Erythrobacter sp. SD-21] Length = 243 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 42/233 (18%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---------------VASGK 63 + +A+N++N T GF+ + F+ + Q+ S V S Sbjct: 1 MRVIANNLANVGTTGFKRDRANFATLAYQDARVAGQRSSAETAYATGLNLGTGVAVQSTS 60 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 + +++ G+ +T D AL+GD +F +E P G I TR G F ++ +G LV+ G Y Sbjct: 61 QVMTQ--GALSTTSNAFDLALDGDGYFQIEMPGGRIGYTRAGNFTLSAEGQLVTQQG-YS 117 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVDMSQ 167 V I +P+ V G +S Q + GL ++ Sbjct: 118 V----QPAITVPEGATAIAVSPDGTVSATLPGEAGPAELGQIQIARFTNPSGLQAI--GD 171 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 F+ + +P + P E+ G +++G LE SN N + E+ +MI + + Sbjct: 172 NFLVETAASGAPELAPGG-ENGRG-NIRQGMLESSNVNIVEELVEMIECQRAY 222 >gi|153952075|ref|YP_001398357.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. doylei 269.97] gi|152939521|gb|ABS44262.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. doylei 269.97] Length = 263 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 47/248 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQMQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 58 FVASGKEY--------LSK--EVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 SG E ++K G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTKGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV- 154 F ++G++V++ G + +M IP+ NV G +S Q G+V Sbjct: 121 FTKDNEGNIVNSDGYRLLPEMT-----IPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 155 ----IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANS 206 I GL+S+ +N + P+ ++G T++ GF+E SN Sbjct: 176 LVQFINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQL 227 Query: 207 MYEMGQMI 214 + EM +I Sbjct: 228 VEEMTDLI 235 >gi|126175144|ref|YP_001051293.1| flagellar basal body rod protein FlgG [Shewanella baltica OS155] gi|217972600|ref|YP_002357351.1| flagellar basal body rod protein FlgG [Shewanella baltica OS223] gi|304409976|ref|ZP_07391595.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|307302311|ref|ZP_07582069.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] gi|125998349|gb|ABN62424.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|217497735|gb|ACK45928.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS223] gi|304351385|gb|EFM15784.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|306914349|gb|EFN44770.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] Length = 262 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GL AQ + ++ +++N++N TVG++ + F +++ N + Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSSSNTKLPNGLN 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I VA+ K + G+ ++T LD +EG +F ++ P G TR+G+F + D Sbjct: 68 IGAGTKVVATQKMFTQ---GNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQFTLDD 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G +V+ Y VL A I IP V +GE+S K A + F+ Sbjct: 125 TGQIVTPGSGY-VLQPA---ITIPDNATSITVSAEGEVSVKTPGTADNQVVGQLTMTDFI 180 Query: 171 RRENSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 181 NP--SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|171321213|ref|ZP_02910183.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] gi|171093523|gb|EDT38693.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] Length = 258 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 42/263 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQ 54 M F IG A + + T A N++N +T F+ V FS ++ GA + + Sbjct: 1 MNNLFYIGATGLAAQQTAVDTTAQNIANLNTPAFKRGAVTFSTLLSSGALPGARQENAAP 60 Query: 55 KISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 +G ++ V G+ T D A+ + + L++P G I+L R GR +V D Sbjct: 61 AGIAGGAGVTASARPVFSPGTLRQTDDTWDLAIRSEGFVELDAPDGNIMLWRGGRLRVGD 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI-------ATMGLYSV 163 DG L +++G P+ SVP +D E+ EI+ GKV+ A + + + Sbjct: 121 DGYLRASNG-VPLKAAISVP-----RD-----AERLEIAPDGKVLAMIPNQAAPLEVGRI 169 Query: 164 DMSQ------------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 +++Q G R + G + I P ED +G T+ +GF E SN E+ Sbjct: 170 EIAQATDPRALQPLGDGTYRIADEGAA-VIRSRPGEDNAG-TLAQGFSEASNVALADELA 227 Query: 212 QMIHLTQKFNSITTLIDENEKSM 234 ++ + + + L+ ++ M Sbjct: 228 GLMLYQRAYAASAKLVQAGDELM 250 >gi|163750570|ref|ZP_02157808.1| flagellar hook protein [Shewanella benthica KT99] gi|161329725|gb|EDQ00714.1| flagellar hook protein [Shewanella benthica KT99] Length = 455 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 23/132 (17%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L+T A+N++N +++GF+ + +F++V S A+GK Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYAN---------SIFANGK 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVT 109 + V GS T LD A+ G +F S + TR G FKV Sbjct: 53 TAVGGGVTTSQIAQQFHQGSLQFTNNALDLAINGGGFFVTSSELEAKDHSFTRAGAFKVN 112 Query: 110 DDGSLVSASGKY 121 LV + G Y Sbjct: 113 SADYLVDSQGNY 124 >gi|26991075|ref|NP_746500.1| flagellar basal body rod protein FlgF [Pseudomonas putida KT2440] gi|24986109|gb|AAN69964.1|AE016634_13 flagellar basal-body rod protein FlgF [Pseudomonas putida KT2440] Length = 246 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 50/236 (21%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q AL Q+ A+N++N T GF + D++Q S G + ++ Sbjct: 12 ASQNALAQKAH--ANNLANISTNGF--------------QRDLEQARSMPVFGDSFPARA 55 Query: 70 V------------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G + TG +LD A+ G + A+++P G R G + G L + Sbjct: 56 FAMTERPATDFSEGPLVETGRDLDVAVTGKGFIAVQAPDGSEAYVRTGSLNIDALGVLRA 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-----LYSVDMSQGFVR 171 +G PV+ PI IP + ++ VG G IS I +MG + VD + V Sbjct: 116 GNG-MPVIGNGG-PIAIPPEQKV-EVGADGTIS-----IRSMGEDPRVMAEVDRIK-LVN 166 Query: 172 RENSGISPNI-------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G++ + P + V V GFLE SN N++ EM ++ L+++F Sbjct: 167 PDTKGLTKGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQF 222 >gi|107026757|ref|YP_624268.1| flagellar hook protein FlgE [Burkholderia cenocepacia AU 1054] gi|116692051|ref|YP_837584.1| flagellar hook protein FlgE [Burkholderia cenocepacia HI2424] gi|105896131|gb|ABF79295.1| flagellar basal body FlaE [Burkholderia cenocepacia AU 1054] gi|116650051|gb|ABK10691.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia HI2424] Length = 414 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 16/144 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF+ + F+++ ++ ++ +I +AS + Sbjct: 6 GLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRLASVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK--- 120 + + G+ ST + LD A+ G+ +F + S +RDG F +G++V A G+ Sbjct: 66 QNFGQ--GTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRNLM 123 Query: 121 -YP-----VLDMA-SVPIQIPQKD 137 Y +++ A +VP+Q P + Sbjct: 124 GYAAGAGGMINTAQTVPLQAPTSN 147 >gi|238751764|ref|ZP_04613252.1| Flagellar basal-body rod protein flgG [Yersinia rohdei ATCC 43380] gi|238710035|gb|EEQ02265.1| Flagellar basal-body rod protein flgG [Yersinia rohdei ATCC 43380] Length = 260 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+ SG + V ++P +D I +V +G+ + Q G++ T G Sbjct: 125 NGQLVT-SGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L S M + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LES--MGENLYQETASSGAPN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLTQL 260 >gi|86151551|ref|ZP_01069765.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 260.94] gi|85841180|gb|EAQ58428.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 260.94] Length = 263 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 47/248 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 61 SGKEYLSKEVG-------------SFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 + VG + ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTNTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV- 154 F ++G++V++ G + +M IP+ NV G +S Q G+V Sbjct: 121 FTKDNEGNIVNSDGYRLLPEMT-----IPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 155 ----IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANS 206 I GL+S+ +N + P+ ++G T++ GF+E SN Sbjct: 176 LVQFINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQL 227 Query: 207 MYEMGQMI 214 + EM +I Sbjct: 228 VEEMTDLI 235 >gi|56551507|ref|YP_162346.1| hypothetical protein ZMO0611 [Zymomonas mobilis subsp. mobilis ZM4] gi|56543081|gb|AAV89235.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 411 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 17/164 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKISFV 59 +F L A + LS ++N++N+ + GF+ F E+V A +I Q Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPLASGQNIGQGTRLR 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVS 116 A+ +++ S GS +T LD + GD +F ++S I LTRDG F + ++V+ Sbjct: 62 ATIQDFTS---GSMKTTNRALDMMVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVT 118 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 + G Y + I+N GE G + G+V+ + L Sbjct: 119 SDGHYLQV------YATTNSGNIYNNGETGS-ATGGRVVKNLTL 155 >gi|33601543|ref|NP_889103.1| flagellar basal body rod protein FlgG [Bordetella bronchiseptica RB50] gi|33575979|emb|CAE33058.1| flagellar basal-body rod protein [Bordetella bronchiseptica RB50] Length = 261 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 23/147 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF--------VASGK 63 + +++N++N T GF+ + F +++ GA D +Q S VA+ + Sbjct: 19 MDVISNNLANVQTNGFKRGRAVFQDLMYQTLRQPGAQVGDANQLPSGLQLGTGVQVAATQ 78 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 S+ G+ +TG E+D A++G + +E P G TRDG +V +G L +A G Sbjct: 79 RVFSQ--GNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGY-- 134 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEIS 149 + PI +P +G+ G +S Sbjct: 135 ---VIQPPINVPDNALSLTIGKDGTVS 158 >gi|149182512|ref|ZP_01860985.1| flagellar hook protein [Bacillus sp. SG-1] gi|148849772|gb|EDL63949.1| flagellar hook protein [Bacillus sp. SG-1] Length = 396 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 26/131 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ + +L + +N++N +T GF+ +V F K+ ++Q IS ++ +E Sbjct: 4 GISGMKNFQTKLDVIGNNIANVNTYGFKKGRVTF-------KDTMNQTISGASAAQEARG 56 Query: 68 K----EVG---------------SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 +VG S STG LD A+ GD +F ++ +R G F + Sbjct: 57 GRNPMQVGLGSTLSTIDTIHTQSSLQSTGRPLDLAINGDGYFVVKQGDAQFYSRAGNFYL 116 Query: 109 TDDGSLVSASG 119 D+G+LV+ G Sbjct: 117 DDNGTLVNGDG 127 >gi|187924404|ref|YP_001896046.1| flagellar basal body FlaE domain protein [Burkholderia phytofirmans PsJN] gi|187715598|gb|ACD16822.1| flagellar basal body FlaE domain protein [Burkholderia phytofirmans PsJN] Length = 410 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 15/150 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 S+ GL+ A L + +N++N +TVGF++ +F++ V+ A N + Sbjct: 2 SYQTGLSGLSAASTDLDVIGNNIANANTVGFKSSTAQFADMYANAVMTAANNQVGIGTRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + +++ G+F T LD A+ G+ +F L + ++ +R+G F + G + +A Sbjct: 62 STAEQDF---SNGTFSKTDRPLDIAINGNGFFQLSNNGALVYSRNGVFHLDKSGVIENAQ 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 G P++ + P D N G G + Sbjct: 119 G-LPLMGYS------PGPDGKMNTGSVGPL 141 >gi|16760055|ref|NP_455672.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764535|ref|NP_460150.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142174|ref|NP_805516.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413834|ref|YP_150909.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179696|ref|YP_216113.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614598|ref|YP_001588563.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553033|ref|ZP_02346783.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994043|ref|ZP_02575135.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234105|ref|ZP_02659163.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237261|ref|ZP_02662319.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244778|ref|ZP_02669710.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264028|ref|ZP_02686001.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467131|ref|ZP_02700973.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822622|ref|ZP_02834622.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446556|ref|YP_002040433.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450313|ref|YP_002045178.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472223|ref|ZP_03078207.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734396|ref|YP_002114178.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251031|ref|YP_002146864.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262058|ref|ZP_03162132.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362757|ref|YP_002142394.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200390304|ref|ZP_03216915.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207857313|ref|YP_002243964.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213424682|ref|ZP_03357447.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582039|ref|ZP_03363865.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613179|ref|ZP_03371005.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648928|ref|ZP_03378981.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865503|ref|ZP_03387622.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584317|ref|YP_002638115.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911001|ref|ZP_04654838.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289828578|ref|ZP_06546403.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392289|sp|P0A1J3|FLGG_SALTY RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|60392290|sp|P0A1J4|FLGG_SALTI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|25298926|pir||AD0640 flagellar basal-body rod protein FlgG (distal rod protein) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|47677|emb|CAA36314.1| flgG protein product (AA 1-260) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419696|gb|AAL20109.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502349|emb|CAD08303.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhi] gi|29137804|gb|AAO69365.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128091|gb|AAV77597.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127329|gb|AAX65032.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363962|gb|ABX67730.1| hypothetical protein SPAB_02348 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405219|gb|ACF65441.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408617|gb|ACF68836.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458587|gb|EDX47426.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709898|gb|ACF89119.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630467|gb|EDX49093.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094234|emb|CAR59739.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214734|gb|ACH52131.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240313|gb|EDY22933.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289797|gb|EDY29158.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602749|gb|EDZ01295.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322431|gb|EDZ10270.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328014|gb|EDZ14778.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331903|gb|EDZ18667.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336447|gb|EDZ23211.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341038|gb|EDZ27802.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347402|gb|EDZ34033.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709116|emb|CAR33449.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468844|gb|ACN46674.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246390|emb|CBG24199.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992953|gb|ACY87838.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157720|emb|CBW17212.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912166|dbj|BAJ36140.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086381|emb|CBY96154.1| Flagellar basal-body rod protein flgG Distal rod protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223797|gb|EFX48860.1| Flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616549|gb|EFY13458.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620510|gb|EFY17374.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622504|gb|EFY19349.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629655|gb|EFY26430.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632625|gb|EFY29371.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636880|gb|EFY33583.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641582|gb|EFY38220.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644072|gb|EFY40618.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650028|gb|EFY46446.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653953|gb|EFY50276.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658485|gb|EFY54747.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663343|gb|EFY59545.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670077|gb|EFY66217.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674859|gb|EFY70950.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676671|gb|EFY72738.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682593|gb|EFY78612.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686654|gb|EFY82633.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714166|gb|EFZ05737.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129449|gb|ADX16879.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195768|gb|EFZ80944.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198340|gb|EFZ83444.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323209179|gb|EFZ94116.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209683|gb|EFZ94612.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217861|gb|EGA02576.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222149|gb|EGA06533.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224921|gb|EGA09179.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229663|gb|EGA13786.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232888|gb|EGA16984.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240623|gb|EGA24665.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242937|gb|EGA26958.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250254|gb|EGA34143.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252629|gb|EGA36467.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258843|gb|EGA42496.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261032|gb|EGA44625.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266941|gb|EGA50426.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269982|gb|EGA53431.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332988070|gb|AEF07053.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + ++ ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YIETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|330818585|ref|YP_004362290.1| flagellar hook protein FlgE [Burkholderia gladioli BSR3] gi|327370978|gb|AEA62334.1| flagellar hook protein FlgE [Burkholderia gladioli BSR3] Length = 414 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +T GF+ +F++ V A+ N I A Sbjct: 6 GLSGLQGASNDLDVIGNNIANANTTGFKAATAQFTDMYANSVSSAVANGIGIGTQLAAVA 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK-- 120 + + + G F +T L+ A+ G+ +F + + TRDG F +G++V+A+G Sbjct: 66 QVF---QQGGFTTTQNPLNMAINGNGFFQVTNNGVTTYTRDGTFNADKNGNIVNAAGAQL 122 Query: 121 --YPV------LDMASVPIQIPQKD 137 Y V A VP+ PQ + Sbjct: 123 MGYAVNANGVINTGALVPLTAPQGN 147 >gi|123442783|ref|YP_001006760.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089744|emb|CAL12597.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 251 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 23/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA+ +LE + T A+N++N T GFR+ V I + V + + Sbjct: 11 AARQSLELQAVT-ANNLANASTPGFRSQLAAMRAV--PIDGPSMATRTMVTASTPGVDIS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 GS +G LD AL+ D + A+ P G TR+G +++ DG + YP++ + Sbjct: 68 QGSMNYSGRPLDVALQQDGYLAVRLPDGTEAYTRNGNIQISADGQMTVQG--YPLMG-DN 124 Query: 129 VPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIP 182 PI++P + + + G IS IA +G + V + G V + G+ P Sbjct: 125 GPIEVPPQAAV-TIAADGTISALNAGDSPNTIAQLGQIKRVRATAGEVMHGDDGLFHLTP 183 Query: 183 PT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 T L + + + G LE SN ++ M MI + F + +DENE+ Sbjct: 184 ETQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMADMIANARSFEMQMKVIHSVDENEQ 242 >gi|253682153|ref|ZP_04862950.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] gi|253561865|gb|EES91317.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] Length = 262 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 25/160 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL- 66 G+AA++ +L +++NM+N+ TVG++ + VKF+++ ++ ++D+ V+ G+ L Sbjct: 11 GMAAEM---DKLDAISNNMANSTTVGYKRVDVKFNDL---MQENLDRLGYPVSKGQGKLQ 64 Query: 67 -------SKEV------GSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDG 112 S E+ G+ + T D A++G +F + G L TR G F + G Sbjct: 65 VTGGGVKSTEIERDNAQGNLLQTNNNTDLAIDGKGYFKVVDGEGRTLYTRGGSFNIDPSG 124 Query: 113 SLVSASG-KYPVLDMASVPIQIPQK---DEIFNVGEKGEI 148 ++V +G + +L+ + + + E FNV E G + Sbjct: 125 TVVDKNGNRLVILNENGIDVNTGRAGFTKESFNVSEDGYL 164 >gi|121596117|ref|YP_988013.1| hypothetical protein Ajs_3830 [Acidovorax sp. JS42] gi|120608197|gb|ABM43937.1| protein of unknown function DUF1078 domain protein [Acidovorax sp. JS42] Length = 538 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 14/149 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + N++N++T GF+ + +F+ ++ + S + Sbjct: 3 FQQGLSGLNASAKNLDVIGHNIANSNTTGFKASRTEFAAMIASAIGAASGTNSGIGVEVS 62 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK- 120 ++++ G+ TG LD A+ G+ +F L+ P G TR G FK+ + G++V+ G Sbjct: 63 AIAQQFNQGNLTVTGNSLDVAINGNGFFTLQMPDGSRAYTRAGNFKLDNVGNVVTNDGAQ 122 Query: 121 ---YPV-------LDMASVPIQIPQKDEI 139 YP+ +VP+ P I Sbjct: 123 VMGYPIDPVTGLRTSSTAVPLTFPTTAPI 151 >gi|237653583|ref|YP_002889897.1| flagellar basal body FlaE domain protein [Thauera sp. MZ1T] gi|237624830|gb|ACR01520.1| flagellar basal body FlaE domain protein [Thauera sp. MZ1T] Length = 450 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVAS- 61 SF GL+ + L +++N++NT+T+GF+T FS+V A + I K V + Sbjct: 2 SFQQGLSGLSVSSKALDIISNNVANTNTIGFKTGSAIFSDVFAASLTGSISGKQVGVGAT 61 Query: 62 -GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G + G+ +T LD A+ GD +F + G + TR+G+F++ +G + + +G Sbjct: 62 LGAVRQTFTQGNLTTTNNPLDLAINGDGFFVVSRENGPDVYTRNGQFELDKEGFIRTPTG 121 Query: 120 K 120 + Sbjct: 122 E 122 >gi|118589967|ref|ZP_01547371.1| flagellar basal body FlaE [Stappia aggregata IAM 12614] gi|118437464|gb|EAV44101.1| flagellar basal body FlaE [Stappia aggregata IAM 12614] Length = 424 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 12/120 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVASGKE-- 64 G++ A +L TVA+N+ N+ T G++ K +FS +V + Q SF + G E Sbjct: 10 GVSGMNAQSSKLGTVAENIMNSSTTGYKRAKSEFSSLV------VSQGAGSFNSGGVEAH 63 Query: 65 --YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 Y + G+ T ++LD A++G+ +F + + G LTR G F DG L++ +G Y Sbjct: 64 TQYEITKKGNLSFTTSKLDLAIDGNGFFVVGNEAGESFLTRAGHFVPDGDGYLLNTAGYY 123 >gi|242238971|ref|YP_002987152.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech703] gi|242131028|gb|ACS85330.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech703] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 114/264 (43%), Gaps = 44/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +++N++N T GF+ + F +++ GA +D S + Sbjct: 11 GLDAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSDQTNLPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 G E L + G+ T D A+ G +F + P G TRDG F++ +G Sbjct: 68 LGTGVRPVSTERLHSQ-GNLEQTENTKDIAINGQGFFEVLMPDGTTAYTRDGSFQLDANG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-----IAT 157 LV+ASG Y V I IP + V G +S Q G++ I Sbjct: 127 QLVTASG-YTV----QPAITIPTTAQTMTVARDGTVSVTLQGQTASTQVGQLTLSTFINP 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL S + + + S +P TP ++ +GV + +G++E SN N E+ MI + Sbjct: 182 AGLQS--LGENLYQETQSSGAP-TQSTPGQNGAGV-LYQGYVETSNVNVAEELVSMIQV- 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + SML+ + I Sbjct: 237 QRAYEINSKAVSTSDSMLQRLTQI 260 >gi|15964432|ref|NP_384785.1| flagellar hook protein FlgE [Sinorhizobium meliloti 1021] gi|307311574|ref|ZP_07591215.1| fagellar hook-basal body protein [Sinorhizobium meliloti BL225C] gi|20141447|sp|Q9X5Y0|FLGE_RHIME RecName: Full=Flagellar hook protein flgE gi|15073609|emb|CAC45251.1| Flagellar hook protein [Sinorhizobium meliloti 1021] gi|306899591|gb|EFN30220.1| fagellar hook-basal body protein [Sinorhizobium meliloti BL225C] Length = 406 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 22/123 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVA+N++N +T G++ +FS ++ G ++ ++ IS Sbjct: 10 GVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGSYNSGGVQTEVRYSIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G+ T + D A++G +F +E G LTR G F +G+LV+ Sbjct: 70 -----------QQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRAGSFVPDSEGNLVN 118 Query: 117 ASG 119 ASG Sbjct: 119 ASG 121 >gi|57237001|ref|YP_178802.1| flagellar basal body rod protein FlgG [Campylobacter jejuni RM1221] gi|86149818|ref|ZP_01068047.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153387|ref|ZP_01071591.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597119|ref|ZP_01100355.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 84-25] gi|121613571|ref|YP_001000394.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81-176] gi|148926663|ref|ZP_01810344.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414985|ref|YP_001482241.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81116] gi|167005337|ref|ZP_02271095.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355540|ref|ZP_03222311.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562337|ref|YP_002344116.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283956107|ref|ZP_06373594.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] gi|57165805|gb|AAW34584.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni RM1221] gi|85839636|gb|EAQ56896.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843113|gb|EAQ60324.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249438|gb|EAQ72398.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81-176] gi|88190808|gb|EAQ94781.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 84-25] gi|112360043|emb|CAL34835.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845182|gb|EDK22277.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385949|gb|ABV52264.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346774|gb|EDZ33406.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792427|gb|EFC31209.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] gi|284925954|gb|ADC28306.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni IA3902] gi|307747622|gb|ADN90892.1| Flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni M1] gi|315058161|gb|ADT72490.1| Flagellar basal-body rod protein flgG [Campylobacter jejuni subsp. jejuni S3] gi|315926812|gb|EFV06186.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315931897|gb|EFV10852.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 327] Length = 263 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 47/248 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 58 FVASGKEY--------LSKEV--GSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 SG E ++K G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV- 154 F ++G++V++ G + +M IP+ NV G +S Q G+V Sbjct: 121 FTKDNEGNIVNSDGYRLLPEMT-----IPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 155 ----IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANS 206 I GL+S+ +N + P+ ++G T++ GF+E SN Sbjct: 176 LVQFINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQL 227 Query: 207 MYEMGQMI 214 + EM +I Sbjct: 228 VEEMTDLI 235 >gi|90577344|ref|ZP_01233155.1| flagellar hook protein [Vibrio angustum S14] gi|90440430|gb|EAS65610.1| flagellar hook protein [Vibrio angustum S14] Length = 408 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A +L+T+++N++N T GF+ + +FS A+ N + VA+ Sbjct: 2 SFDIALSGLDATNVQLNTISNNIANVSTSGFKESRTEFS----AVYNGMQAGGVEVAAIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + K GS TG LD A+ G +F + G L TR G F D ++VS +G Sbjct: 58 QNFDK-TGSITGTGRPLDLAISGSGFFVTKDHTGQTLYTRSGVFNSDKDNNIVSNNG 113 >gi|260779347|ref|ZP_05888239.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] gi|260605511|gb|EEX31806.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] Length = 362 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G+ +F + G ++ TR G F D ++ +G Sbjct: 58 QNFDKN-GSVSGTGRAMDLAINGNGFFVTKDSAGQLLYTRSGVFGTDKDNYVIGNTG 113 >gi|323204838|gb|EFZ89832.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 255 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 6 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 62 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 63 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 119 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 120 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 179 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + ++ ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 180 ESIGENL-YIETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 235 >gi|239995123|ref|ZP_04715647.1| flagellar basal body rod protein FlgG [Alteromonas macleodii ATCC 27126] Length = 262 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 74/150 (49%), Gaps = 18/150 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVASGKE 64 A + ++ V++N++N TVGF+ + F +++ N + S + SG + Sbjct: 14 AAQTDVAVVSNNLANASTVGFKKDRAVFEDLLYQNINQPGGRSSADTELPSGLMLGSGSK 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 ++ + G+ ++T LD +++G +F + P G I +R+G+F + D G +V++ Sbjct: 74 VVATQKAHTQGNLLTTENALDMSIQGRGYFEILQPDGTIAYSRNGQFSLNDQGQIVTSGA 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 + + + IP+ + + + GEIS Sbjct: 134 GF----LLQPEVAIPEDAQQITISQDGEIS 159 >gi|32266580|ref|NP_860612.1| flagellar basal body rod protein FlgG [Helicobacter hepaticus ATCC 51449] gi|32262631|gb|AAP77678.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] Length = 262 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/274 (21%), Positives = 118/274 (43%), Gaps = 47/274 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDID 53 M S L + ++ ++N++N +T G++ + +F+++ G ++ Sbjct: 1 MMRSLYTASTGMLGQQLQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETT 60 Query: 54 QKISFVASGKEYLSKEVGSFISTG------TELDFALEGDAWFALESPRG-IILTRDGRF 106 + + G + S G LD A+ G+ +F +E P G I TR G F Sbjct: 61 ISPTGIEVGIGVRPVAIQKMFSQGHPKETENNLDIAITGNGFFQIELPDGNIAYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----------EISQKGKV-- 154 K+ +DG++V+A G + ++ IP+ N+G G E++ G++ Sbjct: 121 KLDNDGNVVNAEGYRLIPELT-----IPEGATQINIGTDGTVSVIEGNQTEVNILGQIEI 175 Query: 155 ---IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSM 207 I GL+S+ +N I+ N P+ + G+ +++GFLE SN + Sbjct: 176 VNFINPAGLHSLG--------DNLFINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLV 227 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + + I + SML+ + + Sbjct: 228 EEMTDLITGQRAYEANSKTI-QTADSMLQTVNGL 260 >gi|315124200|ref|YP_004066204.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017922|gb|ADT66015.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 263 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 47/248 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 58 FVASGKEY--------LSKEV--GSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 SG E ++K G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV- 154 F ++G++V++ G + +M IP+ NV G +S Q G+V Sbjct: 121 FTKDNEGNIVNSDGYRLLPEMT-----IPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 155 ----IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANS 206 I GL+S+ +N + P+ ++G T++ GF+E SN Sbjct: 176 LVRFINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQL 227 Query: 207 MYEMGQMI 214 + EM +I Sbjct: 228 VEEMTDLI 235 >gi|299066542|emb|CBJ37732.1| Putative flagellar hook protein (flgE) [Ralstonia solanacearum CMR15] Length = 395 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 9/127 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S I + E+ L ++++ +N +T GF+ ++FS++ Q A Sbjct: 1 MLDSIYIAMTGLHGYEEALRVISNDTTNMNTPGFKGSALQFSDLFYTNSGQSAQGGGHTA 60 Query: 61 SGKEYLSKEVGSFI--------STGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 S + VG+ + +TG +LD A++G F L++ G + TRDG+FK D Sbjct: 61 SQLGFGLNTVGTLLNFKQGQMQTTGNDLDVAVDGQGLFVLKAADGSLRYTRDGQFKFNTD 120 Query: 112 GSLVSAS 118 G+L+S++ Sbjct: 121 GNLISST 127 >gi|238923133|ref|YP_002936646.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] gi|238874805|gb|ACR74512.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] Length = 272 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 114/265 (43%), Gaps = 45/265 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A + + T+A+N+SN +T GF+ + +F K+ + Q I ++ +K VG+ Sbjct: 14 AEQTNVDTIANNLSNVNTTGFKGQRTEF-------KSLLYQTIQTRSTSGNGDAKPVGAQ 66 Query: 74 ISTGTEL-------------------DFALEGDAWFALE-SPRGIILTRDGRFKVTDDG- 112 + GT + DFALEGD +FA+ + TR+G F + G Sbjct: 67 VGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGN 126 Query: 113 --SLVSASGKYPVLDMASVPIQIPQ--KDEIFNVGEKGEI---SQKGKVI---ATMGLYS 162 ++++ S PV+D I +P E + GE G + + +G I + +Y Sbjct: 127 GQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQ 186 Query: 163 VDMSQGFVRRENSGISPNIPP-TPLEDLSGVTVKR-----GFLEDSNANSMYEMGQMIHL 216 + G ++ S ++ P+ +++ +K G+LE SN EM +I + Sbjct: 187 FNNPSGLEKQSGSLLAATANSGNPMLEIANPALKSSKVVTGYLEGSNVQVADEMVNLI-V 245 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 Q+ + + SMLE N+ Sbjct: 246 AQRAYELNSKAITTADSMLETANNL 270 >gi|188534168|ref|YP_001907965.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99] gi|188029210|emb|CAO97082.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + + +A+N++N T GF+ + F +++ GA ++ S Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ T + D A+ G +F+++ P G TRDG F+ +G Sbjct: 68 IGTGTRPVATERLHNQGNLSQTDSSKDVAINGQGFFSVQMPDGTTAYTRDGSFQTDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEIS--QKGKV-----IATMGLYS 162 LV+ +G +PV +P +D + +V ++G+ + Q G++ I GL S Sbjct: 128 LVTNAG-FPVQPAIVIPPNSLSMTISRDGVVSVTQQGQANPVQVGQLTLSTFINDAGLSS 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 M + + + +PN P + +G T+ +G++E SN N E+ MI TQ+ Sbjct: 187 --MGENLYQETQASGAPN-ESNPGNNGAG-TLYQGYVETSNVNVAEELVSMIQ-TQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + ML + I Sbjct: 242 INSKAISTSDQMLAKLTQI 260 >gi|222112272|ref|YP_002554536.1| flagellar basal body flae domain-containing protein [Acidovorax ebreus TPSY] gi|221731716|gb|ACM34536.1| flagellar basal body FlaE domain protein [Acidovorax ebreus TPSY] Length = 531 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 14/149 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + N++N++T GF+ + +F+ ++ + S + Sbjct: 3 FQQGLSGLNASAKNLDVIGHNIANSNTTGFKASRTEFAAMIASAIGAASGTNSGIGVEVS 62 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK- 120 ++++ G+ TG LD A+ G+ +F L+ P G TR G FK+ + G++V+ G Sbjct: 63 AIAQQFNQGNLTVTGNSLDVAINGNGFFTLQMPDGSRAYTRAGNFKLDNVGNVVTNDGAQ 122 Query: 121 ---YPV-------LDMASVPIQIPQKDEI 139 YP+ +VP+ P I Sbjct: 123 VMGYPIDPVTGLRTSSTAVPLTFPTTAPI 151 >gi|78224295|ref|YP_386042.1| hypothetical protein Gmet_3103 [Geobacter metallireducens GS-15] gi|78195550|gb|ABB33317.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 419 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 9/127 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A + +S + +N+SN +T+GF+ ++ FS+V+ + + Q + G + + Sbjct: 10 GISGLNANGEAMSVIGNNISNVNTIGFKQGRMLFSDVLSSTISGGSQ----IGRGVQIQT 65 Query: 68 KE----VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 E GSF ST + D A++GD++F +++ G TR G F D +LV+ G Y V Sbjct: 66 VENQFTQGSFESTESGTDLAVQGDSFFVVQNDNGRYYTRAGAFTFDKDKTLVNPEG-YQV 124 Query: 124 LDMASVP 130 +P Sbjct: 125 QGYGIIP 131 >gi|23099019|ref|NP_692485.1| flagellar basal body rod protein FlgG [Oceanobacillus iheyensis HTE831] gi|22777247|dbj|BAC13520.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831] Length = 285 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 47/277 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---VASGKE 64 G++ + +L + +N++N +TVG++ V F +++ + + V + + Sbjct: 8 GISGMKNSQTKLDVIGNNIANVNTVGYKKSMVNFQDMMSQTTSGAQGSTANRGGVNASQV 67 Query: 65 YLSKEVGSFISTGTE---------LDFALEGDAWFAL--------ESPRGIIL------- 100 L +G+ + T+ LDFA+EGD F L E I L Sbjct: 68 GLGSTIGAISNIHTQGFQQVTNNPLDFAIEGDGMFVLVEGVDADGEGGTNIDLDNVNTAY 127 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ-----IPQKDEIFNVGEKGEISQ----- 150 +R G F + D+G++V++ G Y ++ P Q IP+ + F+V G ++ Sbjct: 128 SRAGNFYLDDNGNIVNSQGLY-LVGFVGDPAQESTINIPESAQSFSVQSNGTVNYIDANG 186 Query: 151 KGKVIATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 +V + L S G ++ N+G++ + TP D G +V G LE S Sbjct: 187 DTQVAGQVALASFSNPSGLQKAGNNLYLDSPNAGLAEQL-YTPESDDLGSSVVSGALEMS 245 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + E +MI + F + T +I +++ + E + Sbjct: 246 NVDLSEEFTEMITAQRSFQANTRIITTSDEILQELVN 282 >gi|315179626|gb|ADT86540.1| flagellar hook protein E [Vibrio furnissii NCTC 11218] Length = 398 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFS----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F D +V +G Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDSMGQTLYTRSGVFGTDKDNYVVGNTG 113 >gi|312880335|ref|ZP_07740135.1| flagellar basal-body rod protein FlgG [Aminomonas paucivorans DSM 12260] gi|310783626|gb|EFQ24024.1| flagellar basal-body rod protein FlgG [Aminomonas paucivorans DSM 12260] Length = 262 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 14/126 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVASGKE 64 G +A + L V++N++N +T G++ ++ F +++ I + + S + +G + Sbjct: 8 GATGMIAQQTNLDVVSNNLANVNTSGYKKVRADFQDLMYQIDREPGAPVEPASMIPTGIQ 67 Query: 65 Y-LSKEV---------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 L V G+ +TG D A+EGD ++ + P G + TRDG +++ +G Sbjct: 68 VGLGTRVVGTSRIMGEGNIQTTGNPTDVAIEGDGFYQVTLPDGTLAYTRDGAWRIDGNGQ 127 Query: 114 LVSASG 119 +V++ G Sbjct: 128 IVTSDG 133 >gi|83719411|ref|YP_440801.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] gi|167617585|ref|ZP_02386216.1| flagellar hook protein FlgE [Burkholderia thailandensis Bt4] gi|257140548|ref|ZP_05588810.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] gi|83653236|gb|ABC37299.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] Length = 413 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +TVGF+ +FS+ V A+ N I + +AS Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIG-TMLASV 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 ++ S+ G+ S+ + L+ A+ G+ +F + + + +RDG F+ +G +V++ G Sbjct: 65 QQQFSQ--GTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLNL 122 Query: 120 ------KYPVLDMA-SVPIQIPQKD 137 K V++ A +VP+Q P + Sbjct: 123 MGYQADKNGVINPAQTVPLQAPTNN 147 >gi|4928060|gb|AAD33398.1|AF129422_1 flagellar hook protein FlgE [Sinorhizobium meliloti] Length = 396 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 22/123 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVA+N++N +T G++ +FS ++ G ++ ++ IS Sbjct: 4 GVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGSYNSGGVQTEVRYSIS 63 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G+ T + D A++G +F +E G LTR G F +G+LV+ Sbjct: 64 -----------QQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRAGSFVPDSEGNLVN 112 Query: 117 ASG 119 ASG Sbjct: 113 ASG 115 >gi|34558066|ref|NP_907881.1| flagellar hook protein FlgE [Wolinella succinogenes DSM 1740] gi|34483784|emb|CAE10781.1| FLAGELLAR HOOK PROTEIN FLGE [Wolinella succinogenes] Length = 745 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 29/144 (20%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----------AIKNDI 52 T FN GL+ L + L +V++N++N +T G+R +F + I ND Sbjct: 4 TLFN-GLSGILTHQVGLDSVSNNIANVNTTGYRANIPQFETLFAKSMSYINSSSPINNDF 62 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFA----------LESP-----RG 97 + ++ ++ +S + GS+ S+ E D A G WF L++P + Sbjct: 63 EHGVTVSSNA---ISNKNGSYKSSDGEFDIAYAGKGWFVVGTQKSGSFDLQNPTVAATQK 119 Query: 98 IILTRDGRFKVTDDGSLVSASGKY 121 TRDG F +G LV+ASG Y Sbjct: 120 NYFTRDGSFSRDSEGYLVNASGYY 143 >gi|160876201|ref|YP_001555517.1| flagellar basal body rod protein FlgG [Shewanella baltica OS195] gi|160861723|gb|ABX50257.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS195] gi|315268391|gb|ADT95244.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS678] Length = 262 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + ++ +++N++N TVG++ + F ++ V A + ++ Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y + I IP V +GE+S K A + F+ Sbjct: 128 IVTPGSGY----LLQPAITIPDNATSITVSAEGEVSVKTPGTAENQVVGQLTMTDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|260767923|ref|ZP_05876857.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|260615953|gb|EEX41138.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] Length = 398 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFS----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F D +V +G Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDSMGQTLYTRSGVFGTDKDNYVVGNTG 113 >gi|261344140|ref|ZP_05971784.1| flagellar basal-body rod protein FlgG [Providencia rustigianii DSM 4541] gi|282567732|gb|EFB73267.1| flagellar basal-body rod protein FlgG [Providencia rustigianii DSM 4541] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---IDQKIS 57 GL AQ + L +++N++N T GF+ + F +++ GA+ +D + + Sbjct: 11 GLDAQ---QTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNIRQPGAMSSDQTSLPSGLQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + + + G+ TGT D A++G + ++ P G TRDG + DG Sbjct: 68 MGTGARPVATMRIHSQGNLNKTGTTTDIAIKGQGFLHVQMPDGTDAYTRDGALQPNQDGQ 127 Query: 114 LVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS----------QKGKVIATM---- 158 LV++SG Y V VP I IP+ ++ G +S Q G++ T Sbjct: 128 LVTSSG-YQV-----VPAIMIPENANSLSIARDGTVSVTVYGDNQPQQIGQITLTTFIND 181 Query: 159 -GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL S M + S +P P + +G+ + +G LE SN N E+ MI Sbjct: 182 AGLES--MGENLYMETASSGAPK-ESAPGTNGAGL-LYQGMLETSNVNVAEELVNMIQTQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|218549194|ref|YP_002382985.1| flagellar basal body rod protein FlgG [Escherichia fergusonii ATCC 35469] gi|218356735|emb|CAQ89363.1| flagellar component of cell-distal portion of basal-body rod [Escherichia fergusonii ATCC 35469] gi|324113873|gb|EGC07847.1| flagellar basal-body rod protein FlgG [Escherichia fergusonii B253] gi|325497614|gb|EGC95473.1| flagellar basal body rod protein FlgG [Escherichia fergusonii ECD227] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + +V ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YVETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|329898288|ref|ZP_08272371.1| Flagellar basal-body rod protein flgF [gamma proteobacterium IMCC3088] gi|328920853|gb|EGG28296.1| Flagellar basal-body rod protein flgF [gamma proteobacterium IMCC3088] Length = 253 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 46/232 (19%) Query: 26 MSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALE 85 ++N TVGF+ +E V + VA+ ++++S G STG +LD ++ Sbjct: 25 LANVSTVGFKESYRHATESVKVASTAFETTYQPVAASEDFISLRAGPMQSTGRKLDIFMQ 84 Query: 86 GDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGE 144 ++ S I TR G +V + G L +G+ V+D A PI +P +G+ Sbjct: 85 AQTVLGVQASNEQIAFTRRGDLRVNEIGQLELGTGQL-VVDDAGSPISVP-------LGQ 136 Query: 145 KGEISQKGKVIATMGLYSVDMSQG-----------------FVRRENSGISPNIP----- 182 EI G V+A Y ++ + RR + P Sbjct: 137 DLEIGADGTVVA----YDPELPEAPGAEVGRLMLRDASATVLARRLDGLFEPATQAGSGG 192 Query: 183 -----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 PTP E LSG LE S+ N + Q++ + F S LI E Sbjct: 193 DFESGPTPPEILSGA------LEGSSVNVSEMLTQLLDYNRSFESRIRLIKE 238 >gi|323703190|ref|ZP_08114843.1| flagellar basal-body rod protein FlgF [Desulfotomaculum nigrificans DSM 574] gi|323531849|gb|EGB21735.1| flagellar basal-body rod protein FlgF [Desulfotomaculum nigrificans DSM 574] Length = 257 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ TG+ D AL+G+ +FA+E P G + TRDG F + +G+L+++ G Y VL Sbjct: 83 GALTETGSPTDLALDGNGFFAVEGPNGEQLYTRDGSFHLDAEGNLLTSDG-YKVLGEGG- 140 Query: 130 PIQIPQKDEIFNVGEKGEI--SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 PI I + V E G I Q ++ L V+ + ++ G P + Sbjct: 141 PITIGDAKHV-TVKENGTIVVGQGEEMTEVDKLQLVEFADPSRLQKAEGNYFADPQGTGQ 199 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + V +G+LE +N + + EM +I T+ + S L+ +++ + ++I + Sbjct: 200 PAATTRVSQGWLEKANVDPVQEMINIIPATRIYESSQRLVQISDELLDKSINQVG 254 >gi|85859175|ref|YP_461377.1| flagellar hook protein [Syntrophus aciditrophicus SB] gi|85722266|gb|ABC77209.1| flagellar hook protein [Syntrophus aciditrophicus SB] Length = 518 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 74/139 (53%), Gaps = 13/139 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQ 54 M + IG A ++++ + +N++N+ T+G+++ +F+ ++ G+ + Q Sbjct: 12 MSNALWIGTTGLNASQRQMDIIGNNLANSSTLGYKSADTQFANMLSQSLTSGSGSFQVGQ 71 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 ++ + ++ + GSF STG+ D A++G+ +F ++ G I TR G F + DG Sbjct: 72 GVAISSVNTKF---DQGSFESTGSVTDMAIDGEGFFPVKDKEGAIYYTRAGAFVIDKDGY 128 Query: 114 LVSASGKYPV--LDMASVP 130 LV +G Y V +++ S P Sbjct: 129 LVDVNG-YRVQGINLFSAP 146 >gi|319898656|ref|YP_004158749.1| flagellar hook protein FlgE [Bartonella clarridgeiae 73] gi|319402620|emb|CBI76165.1| Flagellar hook protein FlgE [Bartonella clarridgeiae 73] Length = 402 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 23/137 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLS VADN++N TVG++ V+FS V G +K+ I IS Sbjct: 10 GVSGMNAQGTRLSGVADNVANAGTVGYKRTNVQFSNYVTPSGQYAYVPGGVKSHIGHDIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 SG + +TG D + G+ +F + G LTR G F DG L + Sbjct: 70 I--SGPAH---------ATGRSGDAMIHGNGFFRVADENGKEFLTRAGSFTRDKDGYLRN 118 Query: 117 ASGKYPVLDMASVPIQI 133 +G Y +L+ IQI Sbjct: 119 TAGYY-LLNEDGERIQI 134 >gi|313497763|gb|ADR59129.1| Flagellar basal body rod protein FlgF [Pseudomonas putida BIRD-1] Length = 246 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 50/236 (21%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q AL Q+ A+N++N T GF + D++Q S G + ++ Sbjct: 12 ASQNALAQKAH--ANNLANISTNGF--------------QRDLEQARSMPVFGDSFPARA 55 Query: 70 V------------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G + TG +LD A+ G + A+++P G R G + G L + Sbjct: 56 FAMTERPATDFSEGPLVETGRDLDVAVTGKGFVAVQAPDGSEAYVRTGSLNIDALGVLRA 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-----LYSVDMSQGFVR 171 +G PV+ PI IP + ++ VG G IS I +MG + VD + V Sbjct: 116 GNG-MPVIGNGG-PIAIPPEQKV-EVGADGTIS-----IRSMGEDPRVMAEVDRIK-LVN 166 Query: 172 RENSGISPNI-------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G++ + P + V V GFLE SN N++ EM ++ L+++F Sbjct: 167 PDTKGLTKGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQF 222 >gi|171059410|ref|YP_001791759.1| flagellar basal-body rod protein FlgG [Leptothrix cholodnii SP-6] gi|170776855|gb|ACB34994.1| flagellar basal-body rod protein FlgG [Leptothrix cholodnii SP-6] Length = 260 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 38/236 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ---------KIS 57 A + +L V++N++N T G++ F +++ GA ++ Q + Sbjct: 14 AQQTQLDVVSNNLANVATNGYKKSHAVFEDLMYQTLRQSGAASSEQTQLPTGLQVGLGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ +++ G+ +G LD A++G+ +F ++ P G TRDG F+V+ G LV+ Sbjct: 74 TVATSRQFTQ---GNLQQSGNTLDVAIKGNGFFPIQMPDGTTGYTRDGAFQVSATGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIP----QKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDM 165 ++G Y V ++P D + +V G+ + Q I GL + Sbjct: 131 SAG-YAVQPGITIPADAQTVTIAPDGVVSVALPGQTAPQVLGQLQVANFINPAGL---EA 186 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G + E + S P +G+ ++ +GFLE SN N + E+ MI + + Sbjct: 187 KGGNLYTETA--SSGTPNGGAPGSNGLGSLSQGFLETSNVNVVEELVTMIQTQRAY 240 >gi|157147102|ref|YP_001454421.1| hypothetical protein CKO_02879 [Citrobacter koseri ATCC BAA-895] gi|157084307|gb|ABV13985.1| hypothetical protein CKO_02879 [Citrobacter koseri ATCC BAA-895] Length = 396 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 10/141 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI + A+ ++L+ +++N++N+ TVGF++ + +FS + Q + SG Sbjct: 2 SFNIATSGLNAITEQLNAISNNIANSGTVGFKSGRAEFSSLYAE-----SQPLGVGVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ +F + G TR G F G+L++ G Y Sbjct: 57 TQSITRGGNISTTGNALDLAISDSGFFMVRDSTGTTAYTRAGYFGTDSSGNLINNLGMY- 115 Query: 123 VLDMASVPIQIPQKDEIFNVG 143 + P+ + E+ +G Sbjct: 116 ---LQGYPVNANGEIEVGTIG 133 >gi|38570330|gb|AAR24613.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni] Length = 263 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 47/248 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKESRAEFADLMYQVMKYAGTSTSATT 60 Query: 58 FVASGKEY--------LSKEV--GSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 SG E ++K G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV- 154 F ++G++V++ G + +M IP+ NV G +S Q G+V Sbjct: 121 FTKDNEGNIVNSDGYRLLPEMT-----IPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 155 ----IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANS 206 I GL+S+ +N + P+ ++G T++ GF+E SN Sbjct: 176 LVQFINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQL 227 Query: 207 MYEMGQMI 214 + EM +I Sbjct: 228 VEEMTDLI 235 >gi|326202441|ref|ZP_08192310.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] gi|325987559|gb|EGD48386.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 114/257 (44%), Gaps = 34/257 (13%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKI---SFVAS----- 61 LA +++L + +NM+N +T ++ V F E++ ND + V S Sbjct: 13 LANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTNPSAVVGSMELSS 72 Query: 62 --GKEYLSKEVGSFISTGTELDFALEGD--------AWF--ALESPRGIIL----TRDGR 105 G+ Y G + TG D A++ D A+F + +P+ + T++G Sbjct: 73 DVGEVYTYYTPGQIVQTGDRYDLAIKDDNTGDKASPAFFTVGVTNPQDNTMQEFYTKNGS 132 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F + + LV+ G Y VL PI + Q D F V KG I Q G V+ T+ + Sbjct: 133 FTLNSNNQLVTGDG-YAVLGKKG-PITLKQGD--FTVDSKGNIMQNGAVVDTLRIAQFAD 188 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 S + N+ + N + + +G +V +G+ E SN N + EM MI + + + + Sbjct: 189 STQLRKFGNNLVQNN--GGEVAEFTG-SVIQGYDELSNVNIIDEMVDMITVMRAYEANQK 245 Query: 226 LIDENEKSMLEAIRNIA 242 ++ + ++ +A+ + Sbjct: 246 VLQAQDGTLDKAVNEVG 262 >gi|319406994|emb|CBI80631.1| Flagellar hook protein FlgE [Bartonella sp. 1-1C] Length = 402 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG-KEYL 66 G++ A RLS VADN++N T+G++ V+FS V K ++V G K ++ Sbjct: 10 GVSGMNAQGTRLSGVADNVANAGTIGYKRTDVQFSNYVTP-----SGKYAYVPGGVKSHI 64 Query: 67 SKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 +V G +TG D + G+ +F + G LTR G F DG L + +G Y Sbjct: 65 GHDVSIGGPARATGRSGDTMIHGNGFFRVADENGKEFLTRAGSFIRDKDGYLRNTAGYY- 123 Query: 123 VLDMASVPIQI 133 +L+ IQI Sbjct: 124 LLNEDGEKIQI 134 >gi|253996317|ref|YP_003048381.1| flagellar basal-body rod protein FlgG [Methylotenera mobilis JLW8] gi|253982996|gb|ACT47854.1| flagellar basal-body rod protein FlgG [Methylotenera mobilis JLW8] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 44/261 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + ++ +++N++N T GF+ + F +++ GA + Q S + Sbjct: 11 GLDAQ---QTQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQTSQQTQLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G ++ E G+ TG + D A++G +F + P G TRDG F+V G Sbjct: 68 LGTGVRPVATERIFTQGNIQQTGNDKDVAIQGAGFFQVLLPDGTTAYTRDGAFQVDFQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 LV++SG + V PI +P + VG G +S Q I Sbjct: 128 LVTSSG-FSV----QPPITVPSNAQTLTVGRDGTVSVTLAGSTAVTQIGQLQLATFINPA 182 Query: 159 GLYSVDMSQGFVRRENSGIS-PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 GL + +V SG + N P T L + +G++E SN N + E+ MI T Sbjct: 183 GLQG-NGENLYVETAASGTANANTPGTNGAGL----LTQGYVETSNVNVVEELVNMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAI 238 Q+ I + ML+ + Sbjct: 237 QRAYEINSKAITTSDQMLQKL 257 >gi|167623362|ref|YP_001673656.1| flagellar basal body rod protein FlgF [Shewanella halifaxensis HAW-EB4] gi|167353384|gb|ABZ75997.1| flagellar basal-body rod protein FlgF [Shewanella halifaxensis HAW-EB4] Length = 247 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 25/216 (11%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF++ + + + A + ++ F + + G +TG Sbjct: 19 LAVSANNLANANTDGFKS-SLAQARSMQAFGEGLPTRV-FSMTETPSANFSSGPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++GD W A+++ G TR G + + G L + G PV+ + PI +P Sbjct: 77 DLDIAVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDRGT-PVMG-DNGPIVLPLPI 134 Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSV--DMSQGFVRREN------SGISPNIPPT 184 E + + G +S + +VI +G + +Q +R E+ SG N P Sbjct: 135 EKVEISQDGIVSVRPSGATAEVIEEVGRIKLVNPGNQNLMRGEDGLFRLMSG--ENAPSD 192 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 P V + G +E SN N+++EM MI L ++F Sbjct: 193 P-----SVGLLSGAVEGSNVNAVHEMVSMIDLQRQF 223 >gi|113969608|ref|YP_733401.1| flagellar basal body rod protein FlgG [Shewanella sp. MR-4] gi|113884292|gb|ABI38344.1| flagellar basal-body rod protein FlgG [Shewanella sp. MR-4] Length = 262 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 36/235 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDIDQKIS 57 GL AQ + ++ +++N++N TVG++ + F ++ + A + ++ Sbjct: 11 GLDAQ---QTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNTKLPNGLN 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 A K ++++ G+ ++T LD +EG +F ++ P G TR+G+F + D G Sbjct: 68 IGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQFTLDDTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V+ Y VL A I IP V +GE+S K A + F+ Sbjct: 128 IVTPGSGY-VLQPA---ITIPDDATSITVSAEGEVSVKTPGTAENQVVGQLSMSDFINP- 182 Query: 174 NSGISP---------NIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 SG+ P TP++ L G+ +++G LE SN N E+ +I Sbjct: 183 -SGLDPMGQNLYTETGASGTPIQGTASLDGMGAIRQGALETSNVNVTEELVNLIE 236 >gi|320173530|gb|EFW48726.1| Flagellar basal-body rod protein FlgG [Shigella dysenteriae CDC 74-1112] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G + TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSVYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|91224199|ref|ZP_01259462.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269965644|ref|ZP_06179757.1| Flagellar hook protein flgE [Vibrio alginolyticus 40B] gi|91191110|gb|EAS77376.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269829712|gb|EEZ83948.1| Flagellar hook protein flgE [Vibrio alginolyticus 40B] Length = 398 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFS----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + K+ GS TG +D A+ G +F + G ++ TR G F TD + V+A Sbjct: 58 QNFDKD-GSITGTGRAMDLAINGGGFFVTKDNMGQMLYTRSGVFS-TDKNNFVTA 110 >gi|254477684|ref|ZP_05091070.1| flagellar basal-body rod protein FlgG [Ruegeria sp. R11] gi|214031927|gb|EEB72762.1| flagellar basal-body rod protein FlgG [Ruegeria sp. R11] Length = 261 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/248 (22%), Positives = 114/248 (45%), Gaps = 41/248 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIK------- 49 + I A + R+ T+++N++N +T G+ + +F+++ G + Sbjct: 3 ALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGTVL 62 Query: 50 -NDIDQKISFVASGKE-YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + AS +L++ G+ TG +LD A++G + + P G TRDG Sbjct: 63 PTGVQVGLGVRASAISIHLAQ--GALTQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G + V S I IP ++ GE+ + +G+++ + L Sbjct: 121 KRSAEGLIVTSDG-FTV----SPDITIPADARNVSINADGEVYAYFDETAEGQLMGQLTL 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 +G FV E SG + +P E+ G T+++G+LE S+ +++ E+ + Sbjct: 176 AGFSNPKGLEALGSNLFVETEASGAA--TVASPGENGLG-TLRQGYLEASSVDAVREVTE 232 Query: 213 MIHLTQKF 220 +I + + Sbjct: 233 LIEAQRGY 240 >gi|27378811|ref|NP_770340.1| flagellar hook protein FlgE [Bradyrhizobium japonicum USDA 110] gi|27351960|dbj|BAC48965.1| flgE [Bradyrhizobium japonicum USDA 110] Length = 421 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 5/110 (4%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA-SGKEYLS 67 ++A A Q LS ++DN++N+DT G++T F +V A N V SG+ ++ Sbjct: 11 ISALSAQSQSLSMISDNIANSDTTGYKTTSAMFDALVTASSNATSYASGGVTVSGRANIT 70 Query: 68 KEVGSFISTGTELDFALEGDAWFALE-SPRG--IILTRDGRFKVTDDGSL 114 ++ G +T D A++G +FA+ S G I TR+G F + + G L Sbjct: 71 QQ-GLLAATSNATDVAIQGSGFFAVSNSTSGGTISYTRNGAFTINNAGYL 119 >gi|262273527|ref|ZP_06051341.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] gi|262222505|gb|EEY73816.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] Length = 243 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 23/144 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAI---KNDIDQKISF----VASGKE 64 + +++N++N +TVGF+ +V F ++ GA+ +N++ I G + Sbjct: 1 MQVISNNLANVNTVGFKQDRVVFEDLFYQTKKQPGAMADQQNEVPGGIQLGNGVRTVGTQ 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 L + G++ +T D A+ G +F +E P G TR+G+F +G +V+A+G Sbjct: 61 KLMRS-GAYQNTQQATDLAIMGGGFFQIEMPDGSTAYTRNGQFHRNSEGMMVTAAG---- 115 Query: 124 LDMASVP-IQIPQKDEIFNVGEKG 146 + VP I+IP+ F VG+ G Sbjct: 116 --LPLVPNIEIPENALSFTVGKDG 137 >gi|170021359|ref|YP_001726313.1| flagellar basal body rod protein FlgF [Escherichia coli ATCC 8739] gi|169756287|gb|ACA78986.1| flagellar basal-body rod protein FlgF [Escherichia coli ATCC 8739] Length = 245 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRADMAMAT-------ND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|15616948|ref|NP_240161.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681701|ref|YP_002468087.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682256|ref|YP_002468640.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471397|ref|ZP_05635396.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386809|sp|P57424|FLGG_BUCAI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|25298916|pir||G84969 flagellar basal-body rod protein flgG [imported] - Buchnera sp. (strain APS) gi|10039013|dbj|BAB13047.1| flagellar basal-body rod protein flgG [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621989|gb|ACL30145.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624544|gb|ACL30699.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086079|gb|ADP66161.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086651|gb|ADP66732.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087237|gb|ADP67317.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087756|gb|ADP67835.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 35/239 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------- 58 GL AQ + ++ +++N++N T GF+ + F +++ + S Sbjct: 11 GLDAQ---QINMNIISNNLANVSTNGFKRSRAVFEDLMYQTIREAGTNSSLETTLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G +S E G+ T D A+ G +F ++ P G I TRDG F++ +G Sbjct: 68 LGTGVRPVSTERIHTQGNLSKTDASKDVAINGSGFFQVQLPDGNIAYTRDGSFQLDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 LV+ SG +P++ I IP N+ G IS + ++ + L + + Sbjct: 128 LVTNSG-FPIIP----EINIPSNSTNINIARDGVISVVVQGQTQPVLLGQLNLINFVNNS 182 Query: 168 GF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G + +E I TP + +GV + +G++E SN N E+ MI + + Sbjct: 183 GLESLGENLYQETQASGSPIETTPGLNGTGV-LYQGYVETSNVNVAEELVNMIQTQRAY 240 >gi|332531620|ref|ZP_08407517.1| flagellar basal-body rod FlgG [Hylemonella gracilis ATCC 19624] gi|332038983|gb|EGI75412.1| flagellar basal-body rod FlgG [Hylemonella gracilis ATCC 19624] Length = 259 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 46/257 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---------IDQKIS 57 A +++L T+++N++N+ T GF+ V F +++ G+ ++ + Sbjct: 14 AQQRQLDTISNNLANSSTNGFKRSSVVFEDLMYQNLRTAGSPSSEQTNLPTGLQVGLGAR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ + Y G+ + G LD A+ G+ +F + P G TRDG +++ G+LV+ Sbjct: 74 AVATSRNYTQ---GNLVQ-GRPLDVAINGNGFFQVSMPDGTTQYTRDGALEISATGALVT 129 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIA-TMGLYSVDM-------- 165 ++G P+ D I IP ++ + G ++ K G+ +A T+G ++ Sbjct: 130 SNG-LPLAD----GIVIPPNASDLSIADDGTVTAKLPGQTVAQTIGNITLATFINPAGLE 184 Query: 166 SQG---FVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 ++G F SG P T +G+ + +G+LE SN N + E+ MI TQ+ Sbjct: 185 AKGQNLFAETAASGT----PNTGAPSANGIGKLMQGYLESSNVNVVQELVTMIQ-TQRAY 239 Query: 222 SITTLIDENEKSMLEAI 238 + + + ML+ + Sbjct: 240 EMNSKAIQTSDQMLQKL 256 >gi|56695115|ref|YP_165462.1| flagellar hook protein FlgE, putative [Ruegeria pomeroyi DSS-3] gi|56676852|gb|AAV93518.1| flagellar hook protein FlgE, putative [Ruegeria pomeroyi DSS-3] Length = 431 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 16/130 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+AA A RL+T++DN++N+ T G++ ++ F +V A + + A Sbjct: 3 ISSSLNAGVAALSANASRLATISDNIANSSTYGYKRVETDFHALVNA-----SGRGKYTA 57 Query: 61 SG----KEYLSKEVGSFISTGTELDFALEGDAWFA------LESP-RGIILTRDGRFKVT 109 G + L + GS +ST D A+ G L P + ++L G F+ Sbjct: 58 GGVRTTTQRLIDQRGSLVSTSNSTDLAVRGRGMLPVMRSSQLALPQQDMLLATTGSFRTD 117 Query: 110 DDGSLVSASG 119 D+G L S +G Sbjct: 118 DEGYLKSEAG 127 >gi|56460250|ref|YP_155531.1| flagellar basal body rod protein FlgG [Idiomarina loihiensis L2TR] gi|56179260|gb|AAV81982.1| Flagella basal body rod protein [Idiomarina loihiensis L2TR] Length = 262 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 44/239 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------ 55 GL AQ ++ +S +++N++N+ T+GF+ + F ++ + +I+Q Sbjct: 11 GLDAQ---QRDISVISNNLANSSTIGFKKSRAVFEDL---LYQNINQPGGQSAQDTELPN 64 Query: 56 -------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 VA+ K + G+ +T LD ++G +F + P G I TR+G+F Sbjct: 65 GLMLGAGTKVVATQKSHTQ---GNVQTTDNSLDVMIDGKGFFQVLMPDGNISYTRNGQFS 121 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE--ISQKGK----VIATMGLY 161 + ++G +V++ Y + IQIP+ ++ ++GE ++Q G V+ + L Sbjct: 122 LNEEGEIVTSGNGYTI----EPAIQIPEDAMSVSISQEGEVTVTQPGNPDNVVVGQINLV 177 Query: 162 SVDMSQGFVRR-ENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G +N + PLE + GV +G LE SN N E+ +I Sbjct: 178 NFINPAGLQPMGQNLYKETAVSGAPLEAVPGVDGMGNTIQGALETSNVNVTEELVNLIE 236 >gi|170748107|ref|YP_001754367.1| flagellar basal body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] gi|170654629|gb|ACB23684.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] Length = 262 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 110/262 (41%), Gaps = 44/262 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDIDQ 54 A QL +E +A+N+SN +T F+ + +F +++ AI Sbjct: 13 AQQLNVE----VIANNISNLNTTAFKAARAEFKDLIYQAERPAGVPIQAGESAIPEGAML 68 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + + L ++ G +T LD A+ G WF + P G I TR G F DG Sbjct: 69 GLGVRNTAIRNLHRQ-GPLNNTTNPLDLAINGRGWFQVTMPNGEINYTRAGSFNKNADGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQ 167 LV+A G Y V D A I IPQ + E G++ Q + I + L + Sbjct: 128 LVTAEG-YSV-DPA---IIIPQNAIDVVINETGQVMVKVDGQQLPQTIGQLQLANFTNDA 182 Query: 168 GF------VRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G + RE + + +P T G +++G+LE SN + + E+ +I + F Sbjct: 183 GLEPLGNGLYRETA--ASGLPVTGFAADPGFGKIQQGYLETSNVDPVREITNLISAQRAF 240 Query: 221 NSITTLI---DENEKSMLEAIR 239 + +I DE ++ + IR Sbjct: 241 EMNSKVIQAADEMAGTISKGIR 262 >gi|57167709|ref|ZP_00366849.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|305433215|ref|ZP_07402371.1| flagellar basal-body rod protein FlgG [Campylobacter coli JV20] gi|57020831|gb|EAL57495.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|304443916|gb|EFM36573.1| flagellar basal-body rod protein FlgG [Campylobacter coli JV20] Length = 263 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 41/245 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S + +A + ++ ++N++N +T GF+ + +F++++ + Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKGRAEFADLMYQVMKYAGTSTSATT 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDG 104 + I+ I + + E G+ +T T+ LD A+ G+ +F ++ P G I TR+G Sbjct: 61 LSPSGIEVGIGVRPTAVTKVFTE-GNLKATSTDSLDMAIAGNGFFQIQLPDGTIAYTRNG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV 154 +F ++G++V+A G + +M IP+ NV G +S Q G+V Sbjct: 120 QFTKDNEGNIVNADGYRLLPEMT-----IPEGATAINVATDGTVSVMLPGEQQETQIGQV 174 Query: 155 -----IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 I GL+S M + +P + +D G T++ GF+E SN + E Sbjct: 175 ELVQFINPAGLHS--MGDNLYLETGASGAP-VAGIATQDGLG-TIRHGFIELSNVQLVEE 230 Query: 210 MGQMI 214 M +I Sbjct: 231 MTDLI 235 >gi|83814503|ref|YP_446705.1| flagellar biosynthesis cell-distal portion of basal-body rod [Salinibacter ruber DSM 13855] gi|294508641|ref|YP_003572700.1| flagellar hook protein FlgE [Salinibacter ruber M8] gi|83755897|gb|ABC44010.1| flagellar biosynthesis cell-distal portion of basal-body rod [Salinibacter ruber DSM 13855] gi|294344970|emb|CBH25748.1| Flagellar hook protein FlgE [Salinibacter ruber M8] Length = 432 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 22/135 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------------K 49 S +IG++ + + RL TV++N++N+ T F+ + FSE +G Sbjct: 5 SLSIGVSGLRSHQTRLDTVSNNIANSSTTAFKRQRAAFSEELGQAILGVGRTAGGSNINP 64 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----LTRDG 104 + + + +S VAS S+ GS TG + D AL GD +F G LTR G Sbjct: 65 SKVGRGVS-VASIDRNFSQ--GSLNDTGIKTDLALNGDGFFVASPKSGAASDQRRLTRAG 121 Query: 105 RFKVTDDGSLVSASG 119 F +G LV+A+G Sbjct: 122 NFTFNQNGELVTANG 136 >gi|312115280|ref|YP_004012876.1| flagellar hook-basal body protein [Rhodomicrobium vannielii ATCC 17100] gi|311220409|gb|ADP71777.1| flagellar hook-basal body protein [Rhodomicrobium vannielii ATCC 17100] Length = 413 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 25/129 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--------DIDQKISFV 59 G+AAQ LSTVADN++N T G++ +FS +V + D+D +++ Sbjct: 13 GMAAQ---STALSTVADNIANVSTTGYKRASTEFSTLVASSGAGNYQSGGVDVDTRVAIG 69 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 + + D A++G+ +F + P G LTR G F+ DG+L +A+ Sbjct: 70 SQSGTTSTSS---------STDLAVDGNGFFIVSGPNGTPALTRAGSFEKQADGTLENAA 120 Query: 119 GK----YPV 123 G YPV Sbjct: 121 GYTLLGYPV 129 >gi|170703096|ref|ZP_02893916.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria IOP40-10] gi|170131993|gb|EDT00501.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria IOP40-10] Length = 413 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 14/140 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYL 66 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I + +G + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIG-IGTGLASV 64 Query: 67 SKEVG--SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK---- 120 ++ G + +T + LD A+ G+ +F + + +RDG F+ +G +V + G+ Sbjct: 65 QQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMG 124 Query: 121 YP-----VLDMA-SVPIQIP 134 Y V++ A +VP+Q P Sbjct: 125 YTAGSGGVINTAQTVPLQAP 144 >gi|196249722|ref|ZP_03148418.1| flagellar basal body rod protein [Geobacillus sp. G11MC16] gi|196210598|gb|EDY05361.1| flagellar basal body rod protein [Geobacillus sp. G11MC16] Length = 295 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 86 GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGE 144 G +FA+E+ +G TR+G F ++ DG L + G + VLD I IP E F V + Sbjct: 137 GTLFFAVENGQGETRYTRNGHFTLSPDGYLTTQDG-WNVLDGNGERIAIPS--ESFTVRD 193 Query: 145 KGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDS 202 G I+ + + IA +G+ + V+ N P P + VT VK+GF+E S Sbjct: 194 DGTITAENRTIARLGVVFAANPKTVVKEGNGLFRSTEGPLP-QAPGNVTYMVKQGFIERS 252 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + M ++ + F + +I ++S+ +A+ + Sbjct: 253 NVDIEQTMTDLLAAYRAFEANQKIIQAYDRSLDKAVNEVG 292 >gi|204930805|ref|ZP_03221678.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320264|gb|EDZ05468.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVILPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + ++ ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YIETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|167590742|ref|ZP_02383130.1| flagellar hook protein FlgE [Burkholderia ubonensis Bu] Length = 262 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 14/135 (10%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYLSKEVG--S 72 L + +N++N +TVGF+ + FS++ ++ ++ +I + +G + ++ G + Sbjct: 5 SNNLDVIGNNIANANTVGFKQSRAHFSDMYANSVATSVNTQIG-IGTGLASIDQQFGQGT 63 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK----YP------ 122 +TG LD A+ G+ +F + + + +RDG F +G +V + G+ Y Sbjct: 64 INTTGNALDVAINGNGFFQMSNNGVVTYSRDGTFHRDKNGFIVDSHGRNLMGYNATAGGV 123 Query: 123 VLDMASVPIQIPQKD 137 + A+VP+Q P + Sbjct: 124 INTAATVPMQAPTTN 138 >gi|134297198|ref|YP_001120933.1| flagellar hook protein FlgE [Burkholderia vietnamiensis G4] gi|134140355|gb|ABO56098.1| flagellar basal body FlaE domain protein [Burkholderia vietnamiensis G4] Length = 413 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 14/143 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYL 66 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIG-IGTTLGSV 64 Query: 67 SKEVG--SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG----- 119 K+ G + +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 65 QKQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMG 124 Query: 120 ----KYPVLDMA-SVPIQIPQKD 137 K V+ A +VP+Q P + Sbjct: 125 YAADKNGVVSTAQTVPLQAPTSN 147 >gi|301645414|ref|ZP_07245355.1| flagellar basal body rod protein FlgF [Escherichia coli MS 146-1] gi|307136859|ref|ZP_07496215.1| flagellar basal body rod protein FlgF [Escherichia coli H736] gi|331640714|ref|ZP_08341861.1| putative flagella basal body rod protein [Escherichia coli H736] gi|301076298|gb|EFK91104.1| flagellar basal body rod protein FlgF [Escherichia coli MS 146-1] gi|315616826|gb|EFU97443.1| flagellar basal-body rod protein FlgF [Escherichia coli 3431] gi|331040088|gb|EGI12296.1| putative flagella basal body rod protein [Escherichia coli H736] Length = 245 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRADMAMAT-------ND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-AIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|33592481|ref|NP_880125.1| flagellar basal body rod protein FlgG [Bordetella pertussis Tohama I] gi|33572127|emb|CAE41669.1| flagellar basal-body rod protein FlgG [Bordetella pertussis Tohama I] gi|332381898|gb|AEE66745.1| flagellar basal body rod protein FlgG [Bordetella pertussis CS] Length = 261 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 23/147 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF--------VASGK 63 + +++N++N T GF+ + F +++ GA D +Q S VA+ + Sbjct: 19 MDVISNNLANVQTNGFKWGRAVFQDLMYQTLRQPGAQVGDANQLPSGLQLGMGVQVAATQ 78 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 S+ G+ +TG E+D A++G + +E P G TRDG +V +G L +A G Sbjct: 79 RVFSQ--GNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGY-- 134 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEIS 149 + PI +P +G+ G +S Sbjct: 135 ---VIQPPINVPDNALSLTIGKDGTVS 158 >gi|311280015|ref|YP_003942246.1| flagellar basal-body rod protein FlgG [Enterobacter cloacae SCF1] gi|308749210|gb|ADO48962.1| flagellar basal-body rod protein FlgG [Enterobacter cloacae SCF1] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 39/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQILLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+A G Y V ++P +D + +V ++G+ + Q G++ T G Sbjct: 125 NGQLVTAGG-YQVQPAITIPANTLSITIGRDGVVSVTQQGQTNPVQVGQLNLTTFMNDAG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L S+ + + + SG +PN TP + +G+ + +G++E SN N E+ MI + + Sbjct: 184 LESIGENL-YTETQASG-APN-DTTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRA 239 Query: 220 F 220 + Sbjct: 240 Y 240 >gi|327441420|dbj|BAK17785.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 279 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 42/266 (15%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKND-IDQKISFVASGKEY------- 65 L+ +L T++ N++N++T GF+ + F+E++ ND +D+ + G Y Sbjct: 15 LQHQLDTISTNIANSNTTGFKAQQANFTEMLYQQFNNDELDRTVRDTPVGIRYGVGAQIG 74 Query: 66 ---LSKEVGSFISTGTELDFALEGDAWF---ALESPRGII---LTRDGRFKVTDDG---- 112 ++ GS T +LDFAL + + +++P G + TR+G F VT + Sbjct: 75 LIQSNQSQGSLQVTNRDLDFALTTENQYFNVLMQNPEGDVRTAYTRNGSFYVTQNEPGIL 134 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVIATMGLYSVDMSQGF 169 SLV++ G Y V D PI P F + G + + G + S Sbjct: 135 SLVNSDG-YQVADANGQPITFPDNVTGFTMDSDGSLVASYENGTPLKFQLGISELQKPNV 193 Query: 170 VRRENSGISPNIPPT----------PLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + + G +P L DL G V V++G LE SN + EM +I Sbjct: 194 MEKLQGGTYIGLPENLDALGFTQAQVLTDLQGANRQVGVQKGALEMSNVDVSKEMTNLIQ 253 Query: 216 LTQ--KFNSITTLIDENEKSMLEAIR 239 + +FN+ I + ++ IR Sbjct: 254 AQRSYQFNTRAITIADQMLGLINGIR 279 >gi|302671950|ref|YP_003831910.1| flagellar basal-body rod protein FlgG2 [Butyrivibrio proteoclasticus B316] gi|302396423|gb|ADL35328.1| flagellar basal-body rod protein FlgG2 [Butyrivibrio proteoclasticus B316] Length = 277 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 28/196 (14%) Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-------------GIILTRDGR 105 V G+ Y+ G T DFA+ G +FA+E ++ TRDG Sbjct: 72 VKIGESYVDWSEGPMKETKNTFDFAIGGRGFFAVEYTNKAVNIERDTAGQMDVMYTRDGC 131 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F + +G + + G Y VLD + IQ+ + + G + Q G V+A +G+Y + Sbjct: 132 FTMNVNGEITTQDGDY-VLDDSGSHIQLDPNLPV-EIDTLGNVIQDGAVVAKIGVYDFEA 189 Query: 166 S---QGFVRREN---SGISPNIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + G + +N G + IP E + V GFLE SN + + EM MI Sbjct: 190 TTYPDGRISYDNLLHYGENFFIPAGDDAGAEVVENARVYSGFLEQSNVSVVDEMVNMIAT 249 Query: 217 TQKFNS----ITTLID 228 + +++ ITT+ D Sbjct: 250 QRNYDTNQRMITTIDD 265 >gi|328545491|ref|YP_004305600.1| flagellar basal body FlaE [polymorphum gilvum SL003B-26A1] gi|326415232|gb|ADZ72295.1| Flagellar basal body FlaE [Polymorphum gilvum SL003B-26A1] Length = 424 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 12/120 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG----- 62 G++ A +L TVADN++N+ T G++ +FS ++ + Q SG Sbjct: 10 GVSGMNAQSSKLGTVADNIANSSTTGYKRAASEFSSMI------LSQGTGTYNSGGVKAH 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 Y + G+ T + LD A++G+ +F + G LTR G F V G LV+ +G Y Sbjct: 64 TVYAISQQGAISYTTSGLDLAIDGNGFFVVADREGSTALTRAGSFVVDSKGYLVNTAGYY 123 >gi|322380502|ref|ZP_08054691.1| flagellar basal body rod protein FlgG [Helicobacter suis HS5] gi|321147069|gb|EFX41780.1| flagellar basal body rod protein FlgG [Helicobacter suis HS5] Length = 262 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 33/255 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 L + + T ++N++N +TVGF+ + F+++ G +D + + + G Sbjct: 13 LGQQTHIDTTSNNIANVNTVGFKRQRADFNDLFYQALQYAGTSTSDTTRSPNGIEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + V S G+ LD A+ G +F ++ P G TR G FK+ D G++V+ Sbjct: 73 RTASVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNFKIDDQGNMVTTE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGF--- 169 G Y ++ I PQ ++G G +S VI + L + G Sbjct: 133 G-YLLIPQ----ITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITLANFINPAGLHAL 187 Query: 170 ---VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + S P I D G +++GFLE SN + EM +I + + + + Sbjct: 188 GDNLLAVTSASGPAIVGNANSDGYG-QLRQGFLELSNVRLVEEMTDLITAQRAYEANSKT 246 Query: 227 IDENEKSMLEAIRNI 241 I + +ML+ + ++ Sbjct: 247 I-QTADNMLQTVNSL 260 >gi|172061972|ref|YP_001809624.1| flagellar hook protein FlgE [Burkholderia ambifaria MC40-6] gi|171994489|gb|ACB65408.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MC40-6] Length = 413 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 14/140 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYL 66 GL+ L + +N++N +TVGF++ +FS++ +I ++ +I + +G + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIG-IGTGLASV 64 Query: 67 SKEVG--SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK---- 120 ++ G + +T + LD A+ G+ +F + + +RDG F+ +G +V + G+ Sbjct: 65 QQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMG 124 Query: 121 YP-----VLDMA-SVPIQIP 134 Y V++ A +VP+Q P Sbjct: 125 YTAGSGGVINTAQTVPLQAP 144 >gi|107023953|ref|YP_622280.1| flagellar hook protein FlgE [Burkholderia cenocepacia AU 1054] gi|116691040|ref|YP_836663.1| flagellar hook protein FlgE [Burkholderia cenocepacia HI2424] gi|105894142|gb|ABF77307.1| flagellar basal body FlaE [Burkholderia cenocepacia AU 1054] gi|116649129|gb|ABK09770.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia HI2424] Length = 413 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 72/140 (51%), Gaps = 14/140 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYL 66 GL+ L + +N++N +TVGF++ +F+++ ++ ++ +I + + + Sbjct: 6 GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIG-IGTTLNSV 64 Query: 67 SKEVG--SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG----- 119 ++ G + +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 65 QQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMG 124 Query: 120 ----KYPVLDMA-SVPIQIP 134 K VL+ A +VP+Q P Sbjct: 125 YMADKNGVLNTAQTVPLQAP 144 >gi|114799551|ref|YP_758981.1| flagellar hook protein FlgE [Hyphomonas neptunium ATCC 15444] gi|114739725|gb|ABI77850.1| flagellar hook protein FlgE [Hyphomonas neptunium ATCC 15444] Length = 434 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 20/135 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+ RL+T++DN++N+ T G++ V FS +V + QK S A Sbjct: 3 ISSSLNAGVMGLSVNGTRLATISDNIANSGTYGYKRSAVDFSSMV------LQQKTSAYA 56 Query: 61 SGKEYLS-----KEVGSFISTGTELDFALEG---------DAWFALESPRGIILTRDGRF 106 +G + GS I TG+ D A+ G D L S R ++LT G F Sbjct: 57 AGGVRVDTYKDIAATGSLIRTGSATDVAISGRGLLPVTDLDGTTNLASNRNMMLTPTGSF 116 Query: 107 KVTDDGSLVSASGKY 121 ++G L + SG + Sbjct: 117 FADENGYLRTQSGLF 131 >gi|32490790|ref|NP_871044.1| hypothetical protein WGLp041 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165996|dbj|BAC24187.1| flgE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 410 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 6/119 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF G+ + Q L + +N++N+ T+GF++ V FS++ + ++S V + Sbjct: 2 SFIQGINGINSAAQALDVIGNNIANSQTIGFKSSYVSFSDIFSGSMVGLGSQLSNVT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + S GS ++ LD A+ G+ +F L G I TR+G FK+ +V+ K+ Sbjct: 60 NFAS---GSMVTGSKNLDMAISGNGFFRLSDSGGKIYFTRNGEFKLNSHRQIVNLQNKF 115 >gi|218703526|ref|YP_002411045.1| flagellar basal body rod protein FlgF [Escherichia coli UMN026] gi|293403356|ref|ZP_06647447.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298378967|ref|ZP_06988848.1| flagellar basal-body rod protein FlgF [Escherichia coli FVEC1302] gi|300900358|ref|ZP_07118534.1| flagellar basal body rod protein FlgF [Escherichia coli MS 198-1] gi|300936127|ref|ZP_07151066.1| flagellar basal body rod protein FlgF [Escherichia coli MS 21-1] gi|218430623|emb|CAR11489.1| Lateral flagellar rod protein (FlgF-like) [Escherichia coli UMN026] gi|291429209|gb|EFF02229.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280080|gb|EFI21584.1| flagellar basal-body rod protein FlgF [Escherichia coli FVEC1302] gi|300356126|gb|EFJ71996.1| flagellar basal body rod protein FlgF [Escherichia coli MS 198-1] gi|300458705|gb|EFK22198.1| flagellar basal body rod protein FlgF [Escherichia coli MS 21-1] gi|323171065|gb|EFZ56714.1| flagellar basal-body rod protein FlgF [Escherichia coli LT-68] gi|323191539|gb|EFZ76800.1| flagellar basal-body rod protein FlgF [Escherichia coli RN587/1] Length = 245 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRADMAMAT-------ND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|194432508|ref|ZP_03064795.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 1012] gi|194419395|gb|EDX35477.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 1012] gi|332092914|gb|EGI97982.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 155-74] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 116/237 (48%), Gaps = 31/237 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---IDQKIS 57 GL AQ + + +A+N++N T GF+ + F +++ GA ++ + + Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 58 FVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 G+ ++ + G+ T D A++G +F + P G TRDG F+V +G Sbjct: 68 IGTGGRSVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQ 127 Query: 114 LVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGLYSV 163 LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL S+ Sbjct: 128 LVTAGGFQVQPAITIPANALSISIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESI 187 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 188 GENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|283833628|ref|ZP_06353369.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] gi|291071311|gb|EFE09420.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D I +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|238799109|ref|ZP_04642565.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] gi|238717056|gb|EEQ08916.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSKTDNTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+ SG + V +VP +D I +V +G+ + Q G++ T G Sbjct: 125 NGQLVT-SGGFQVQPAITVPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L S+ + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LESI--GENLYQETASSGAPN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLTQL 260 >gi|312115249|ref|YP_004012845.1| flagellar basal-body rod protein FlgG [Rhodomicrobium vannielii ATCC 17100] gi|311220378|gb|ADP71746.1| flagellar basal-body rod protein FlgG [Rhodomicrobium vannielii ATCC 17100] Length = 261 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 30/242 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQ--- 54 + ++ +A + + +A+N++N +TV F+ + +F SE + N D Sbjct: 3 ALSVAATGMVAQQTNVEVIANNIANANTVAFKRSRAEFADLLYQSERAAGVPNRSDADAI 62 Query: 55 -KISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 + S + G + ++ GS TG LD AL G WF + + TR G F Sbjct: 63 PEASQIGLGVQPVAIRSLHTQGSLTKTGNSLDLALNGRGWFQITGANNETLYTRAGTFSK 122 Query: 109 TDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKV-IATM---- 158 G LV+ G Y V+ ++P IQ+ ++ G ++Q G++ IAT Sbjct: 123 NASGQLVTPDG-YTVIPSITIPTNTTSIQVNTDGTVYVDPGTGVMAQVGQLTIATFVNDA 181 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL + + R S S + E + TV++ ++E SN + + E+ +I + Sbjct: 182 GLEA--LGNNLFRETISSGSAQVQVPGSEGYA--TVQQYYVESSNVDPVQEITNLISAQR 237 Query: 219 KF 220 + Sbjct: 238 NY 239 >gi|91224198|ref|ZP_01259461.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269965645|ref|ZP_06179758.1| Flagellar basal-body rod protein flgF [Vibrio alginolyticus 40B] gi|91191109|gb|EAS77375.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269829713|gb|EEZ83949.1| Flagellar basal-body rod protein flgF [Vibrio alginolyticus 40B] Length = 243 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 17/206 (8%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +V+ E+ G D + + V + + G + TG L Sbjct: 23 SNNLSNADTAGFRADMERVRSVEMQGP---GFDGR-TMVVTNSASTRFDAGDIVKTGRPL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP--QKD 137 D A+ G+ + ++E+P G TR G +V G+L + +G +PVL + P+ +P QK Sbjct: 79 DVAVMGEGYLSVETPAGNEAYTRAGNIQVDTFGAL-TING-FPVLG-DNGPLVVPDYQKI 135 Query: 138 EIFNVGEKGEISQKGK---VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 EI G+ I G V T+ L +++Q +++E+ + ++ P V + Sbjct: 136 EISERGQVSVIPPGGGAEIVAGTLKLVKPEINQ--LQKESDSLLHSVDGVPFAADETVQL 193 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKF 220 +E SN +++ E+ ++ LT+ F Sbjct: 194 SPEHIEGSNVSAIDELVSVMSLTRNF 219 >gi|114562342|ref|YP_749855.1| flagellar hook protein FlgE [Shewanella frigidimarina NCIMB 400] gi|114333635|gb|ABI71017.1| flagellar basal body FlaE domain protein [Shewanella frigidimarina NCIMB 400] Length = 459 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASG 62 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V +I ++ + A+ Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYANSIFSNSKTAVGGGATT 61 Query: 63 KEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 + + GS T LD A+ G +F S G TR G FKV +V ++ Sbjct: 62 TQVAQQFHQGSLQFTSNSLDMAISGGGFFVTSSELGSQDQSYTRAGAFKVDSSNYMVDSA 121 Query: 119 GKY 121 G + Sbjct: 122 GNF 124 >gi|170734374|ref|YP_001766321.1| flagellar hook protein FlgE [Burkholderia cenocepacia MC0-3] gi|254246965|ref|ZP_04940286.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|124871741|gb|EAY63457.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|169817616|gb|ACA92199.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 413 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 72/140 (51%), Gaps = 14/140 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYL 66 GL+ L + +N++N +TVGF++ +F+++ ++ ++ +I + + + Sbjct: 6 GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIG-IGTTLNSV 64 Query: 67 SKEVG--SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG----- 119 ++ G + +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 65 QQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMNLMG 124 Query: 120 ----KYPVLDMA-SVPIQIP 134 K VL+ A +VP+Q P Sbjct: 125 YMADKNGVLNTAQTVPLQAP 144 >gi|330830303|ref|YP_004393255.1| flagellar hook protein FlgE [Aeromonas veronii B565] gi|328805439|gb|AEB50638.1| Flagellar hook protein FlgE [Aeromonas veronii B565] Length = 450 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 30/184 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +T+GF+ + +F++V N Q + VA+ Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTMGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVTDDGSLVS 116 G G+ T LD A++G+ +F G+ TR G FK+ ++ +V+ Sbjct: 62 GAVAQQFHQGALQFTNNALDLAIQGNGFFVTSD--GLTNLDRTYTRAGAFKLNENSYMVN 119 Query: 117 ASGKY-------------PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G Y V A+ PIQIP + GE + K+ A+ L S Sbjct: 120 NQGHYLQGYEINTDGTPKAVSINATKPIQIPDR--------AGEPIKTSKIEASFNLPST 171 Query: 164 DMSQ 167 ++ Sbjct: 172 STTK 175 >gi|330447903|ref|ZP_08311551.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492094|dbj|GAA06048.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 398 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A +L+T+++N++N T GF+ + +FS A+ N + VA+ Sbjct: 2 SFDIALSGLDATNVQLNTISNNIANVSTSGFKESRTEFS----AVYNGMQAGGVEVAAIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + K GS TG LD A+ G +F + G L TR G F D ++VS +G Sbjct: 58 QNFDK-TGSITGTGRPLDLAISGSGFFVTKDHTGQTLYTRSGVFGSDKDNNIVSNNG 113 >gi|114762177|ref|ZP_01441645.1| flagellar hook protein FlgE, putative [Pelagibaca bermudensis HTCC2601] gi|114545201|gb|EAU48204.1| flagellar hook protein FlgE, putative [Roseovarius sp. HTCC2601] Length = 432 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 8/129 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ RLS ++DN++N+ T G+R ++ F+ +V + + A Sbjct: 3 ISSSLNAGVSGLAGNASRLSAISDNIANSSTYGYRRVETDFTALVMSSGSQRAYTAGGTA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEG--------DAWFALESPRGIILTRDGRFKVTDDG 112 L E G+ +ST D A++G A + ++LT G F++ ++G Sbjct: 63 IDNLRLIDEGGAIVSTSNATDLAVDGIGMLPVASQAQYEATGEPELLLTSTGSFRIDENG 122 Query: 113 SLVSASGKY 121 L S +G Y Sbjct: 123 YLASENGYY 131 >gi|90422624|ref|YP_530994.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisB18] gi|90104638|gb|ABD86675.1| flagellar basal body FlaE [Rhodopseudomonas palustris BisB18] Length = 411 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ AQ +LS VADN++N +T G++ +FS ++ V + Y Sbjct: 13 GMTAQ---SNKLSAVADNIANVNTTGYKRASTEFSSLI-LKSGSGSYNSGSVETQVRYAI 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKY 121 + G+ T + D A++G+ +FA+ + G LTR G F G+L +A+G Y Sbjct: 69 SDPGTLQYTTSATDLAIQGNGFFAVSNAGGTPFLTRAGSFVPDGQGNLYNAAGYY 123 >gi|238788317|ref|ZP_04632111.1| Flagellar basal-body rod protein flgG [Yersinia frederiksenii ATCC 33641] gi|238723563|gb|EEQ15209.1| Flagellar basal-body rod protein flgG [Yersinia frederiksenii ATCC 33641] Length = 260 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+ SG + + ++P +D I +V +G+ + Q G++ T G Sbjct: 125 NGQLVT-SGGFQIQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L SV + + S +PN TP + +G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LESV--GENLYQETASSGAPN-DSTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLTQL 260 >gi|255021354|ref|ZP_05293402.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] gi|254969217|gb|EET26731.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] Length = 419 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 22/130 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ L+ A L + +N+SN +TVGF++ +F++ GA + V S Sbjct: 3 AFSTALSGLQAANTDLQVLGNNISNANTVGFKSSNAEFADAYGA---------ALVGSAP 53 Query: 64 EYLSKEVGSFI-------------STGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 Y +G+ + +T LD A+ G+ +F L I+ +R+G+F++ Sbjct: 54 TYGQVGIGTRVMTVAQQFTQGNIQTTNNPLDVAINGNGFFQLNYNGDIVYSRNGQFQLNS 113 Query: 111 DGSLVSASGK 120 G +V +G Sbjct: 114 GGVIVDGNGA 123 >gi|322421662|ref|YP_004200885.1| flagellar basal-body rod protein FlgG [Geobacter sp. M18] gi|320128049|gb|ADW15609.1| flagellar basal-body rod protein FlgG [Geobacter sp. M18] Length = 262 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 41/253 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEYL 66 A + + VA+N++N+ T GF+ + F +++ GA + + + G Sbjct: 14 AQQLNIDVVANNLANSSTTGFKKSRADFQDLMYQTEKTTGAPATNATTVPTGIQVGLGVR 73 Query: 67 SKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 V G+ + TG ELD A++GD + ++ G TR G K G +V++ G Sbjct: 74 PGAVAKVFTTGTIVHTGNELDLAIQGDGFLQVQQSDGSTAYTRAGSLKKDGQGRVVTSDG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM-------------GLYSVD 164 + PV+ + IP ++G G +S Q G+ AT GL ++ Sbjct: 134 Q-PVIP----EVLIPSNATSVSIGTDGTVSVQQAGQTAATTVGTIQLASFTNPSGLNAIG 188 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + F+ ++SG + T +G+ ++++G++E SN + M EM MI ++Q+ I Sbjct: 189 KNL-FLPTDSSGAA----TTGTAGQNGLGSLEQGYIEQSNVSVMEEMVSMI-VSQRAYEI 242 Query: 224 TTLIDENEKSMLE 236 + + ML+ Sbjct: 243 NSKAIQASDDMLQ 255 >gi|138894748|ref|YP_001125201.1| flagellar basal body rod protein FlgG [Geobacillus thermodenitrificans NG80-2] gi|134266261|gb|ABO66456.1| Flagellar hook protein [Geobacillus thermodenitrificans NG80-2] Length = 264 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 48/273 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ A + +L + +N++N +T GF+ + F ++ + Q IS A Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFQDL-------MSQTISG-A 52 Query: 61 SGKEYLS-----KEVG---------------SFISTGTELDFALEGDAWFALESPRG--I 98 SG S ++VG S +TG LD A+ GD +F + G Sbjct: 53 SGPSAASGGTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDANGNNQ 112 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGK 153 + TR G F + +G +V+A+G Y + D P+QI + ++G G + + + Sbjct: 113 MYTRAGNFYLDSEGYIVNANGLYLLGDGG--PLQIDPNAKSLSIGADGNVTIVDDTGNLQ 170 Query: 154 VIATMGLYSVDMSQGFVR------RE--NSGISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 ++ T+ L G + RE NSG P I P + +G V G LE SN + Sbjct: 171 LVGTIQLAKFANPDGLEKEGNNLFRETVNSG-DPQI-GVPGANGTGKLVS-GALEMSNVD 227 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E +MI + F + T +I +++ + E + Sbjct: 228 LAEEFTEMIVAQRGFQANTRIITTSDEILQELV 260 >gi|327254555|gb|EGE66171.1| flagellar basal-body rod protein FlgF [Escherichia coli STEC_7v] Length = 245 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRAD-------MAMATND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQNDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTSDGIPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|302878276|ref|YP_003846840.1| fagellar hook-basal body protein [Gallionella capsiferriformans ES-2] gi|302581065|gb|ADL55076.1| fagellar hook-basal body protein [Gallionella capsiferriformans ES-2] Length = 498 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 9/123 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISF 58 SF GL+ + L T+ +N++N TVGF+ + +F+++ G+ I Sbjct: 2 SFQQGLSGLNGASRHLDTIGNNVANASTVGFKQSQAQFADMFAASLSGSGAMPIGTGTKL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSA 117 VA +++ G+ +T LD A+ G +F L G +L +R+G+F+V G++V+ Sbjct: 62 VAVAQQFTQ---GNITNTNNPLDTAISGQGFFRLTDAAGAVLYSRNGQFQVDKTGNVVNN 118 Query: 118 SGK 120 G Sbjct: 119 QGH 121 >gi|237731009|ref|ZP_04561490.1| flagellar basal body rod protein FlgG [Citrobacter sp. 30_2] gi|226906548|gb|EEH92466.1| flagellar basal body rod protein FlgG [Citrobacter sp. 30_2] Length = 260 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D I +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANSLSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|261341494|ref|ZP_05969352.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] gi|288316290|gb|EFC55228.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] Length = 395 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I ++ A+ ++L +++N++N+ TVGF++ + +F+ + A + ++ VA Sbjct: 2 SFDIAISGLNAINEQLGAISNNIANSGTVGFKSGRAEFASLY-AEGQPLGVGVTNVA--- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKY 121 + +SK G+ ++ + LD A+ G +F + G TR G + +G+LV+ G Y Sbjct: 58 QSISKN-GTVFASASSLDLAINGQGFFVMRDSSGTTAYTRAGYMQTDSNGNLVNNQGMY 115 >gi|157738176|ref|YP_001490860.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] gi|157700030|gb|ABV68190.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] Length = 262 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 25/155 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------DIDQKIS 57 A++ ++ ++N++N +T GF+ + +F +++ N D+ + Sbjct: 14 AMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTTLNPTGIDVGLGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 KE+ G STG LD A+ G +F + P G +R+G FK+ ++G++V+ Sbjct: 74 ISNIQKEFTE---GDLKSTGNPLDIAIAGKGFFQITLPSGETAYSRNGNFKLNEEGTIVN 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +G YP+ I +P + +VG G ++ K Sbjct: 131 GNG-YPL----QPEIVVPNNVKDISVGTDGLVTAK 160 >gi|160878401|ref|YP_001557369.1| flagellar basal body rod protein [Clostridium phytofermentans ISDg] gi|160427067|gb|ABX40630.1| flagellar basal body rod protein [Clostridium phytofermentans ISDg] Length = 257 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 105/227 (46%), Gaps = 27/227 (11%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKV---KFSEVV-----GAIKNDIDQKIS----FVASGK 63 ++RL +++N++N+ TVG++ V F +V+ +N D++I V G+ Sbjct: 16 QKRLDIISNNLANSATVGYKKEGVTNQSFDDVLTLKIRDESENFTDKRIGKMTLGVKLGE 75 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE--------SPRGIILTRDGRFKVTDDGSLV 115 Y GS TG DFA+EG +F +E R TR G+F + +G +V Sbjct: 76 VYTDYTQGSLRETGNTFDFAIEGSGFFKMEVLDKDGNSKER---YTRAGQFLMDKEGYVV 132 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 +G + + + +Q+P + +G + G + + + + + ++++ Sbjct: 133 DVNGNHLMSEGG--YLQVPTDASQIVIDLQGNVFADGAQVDKLVVTDFE-NYDYLKKFGE 189 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + ++D + +++G+ E SN N + EM MI +T+ + + Sbjct: 190 SMYEAVDGARVKD-TAAGIRQGYTEQSNVNVVSEMVNMIAITRAYEA 235 >gi|90422610|ref|YP_530980.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB18] gi|90104624|gb|ABD86661.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB18] Length = 262 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 25/160 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDI 52 G++AQ + + +A+N++N +T ++ + +F+++ GA+ Sbjct: 10 GMSAQ---QLNVEVIANNIANINTTSYKRARAEFTDLFYQIDRMQGVPNRVGEGAVPEGA 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + ++ L + G+ TG D A+ G WF + P G + TR G F D Sbjct: 67 KLGLGVRSAAVRKLHLQ-GALTQTGNPYDLAVNGRGWFQVVGPNGETLYTRAGAFNTNAD 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 G LV+A G Y V D A I IPQ V E G++ K Sbjct: 126 GQLVTADG-YNV-DPA---ILIPQGTVEVTVNESGQVFAK 160 >gi|198244335|ref|YP_002215958.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938851|gb|ACH76184.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623706|gb|EGE30051.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKN---------D 51 GL AQ + + +A+N++N T GF+ + F +++ GA + Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSGQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + ++ ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YIETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|163856437|ref|YP_001630735.1| flagellar basal body rod protein FlgG [Bordetella petrii DSM 12804] gi|163260165|emb|CAP42467.1| flagellar basal-body rod protein FlgG [Bordetella petrii] Length = 261 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 19/145 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKEYLSKE 69 + +++N++N T GF+ + F +++ GA D +Q + + +G S E Sbjct: 19 MDVISNNLANVQTNGFKRGRAIFQDLMYQTLRQPGAQVGDANQLPTGLQLGTGVRVASTE 78 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ +TG+ELD A++G + ++ P G TRDG +V +G L +A G Sbjct: 79 RVFTQGNLNNTGSELDIAIDGKGFLQVDLPDGTQAYTRDGTLQVDQNGQLTTAGGY---- 134 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS 149 + PI +P +G+ G +S Sbjct: 135 -VIQPPINVPDNALSLTIGKDGTVS 158 >gi|99082779|ref|YP_614933.1| hypothetical protein TM1040_2939 [Ruegeria sp. TM1040] gi|99039059|gb|ABF65671.1| Flagellar hook protein flgE [Ruegeria sp. TM1040] Length = 422 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 21/133 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL+ ++DN++N+ T G++ + F +V I Q A Sbjct: 3 ISSSLNAGVAGLAANSTRLAAISDNIANSSTAGYKRVVTSFESMV------ISQSGGRYA 56 Query: 61 SG-----KEYLSKEVGSFISTGTELDFALEGDAWF---------ALESPRGIILTRDGRF 106 +G + E S IST D A+ G + A E P ++LT G F Sbjct: 57 AGGVSVNNTRMIDERSSLISTSNATDLAVAGRGFLPVASLAEVKAGEDPN-MLLTTSGSF 115 Query: 107 KVTDDGSLVSASG 119 + D+G L ++SG Sbjct: 116 RTNDEGYLTTSSG 128 >gi|307627452|gb|ADN71756.1| flagellar basal body rod protein FlgG [Escherichia coli UM146] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + S +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESI--GENLYTETQSSCAPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|317047693|ref|YP_004115341.1| flagellar basal-body rod protein FlgG [Pantoea sp. At-9b] gi|316949310|gb|ADU68785.1| flagellar basal-body rod protein FlgG [Pantoea sp. At-9b] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 27/235 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + + +A+N++N T GF+ + F +++ + S Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRSRAVFEDLMYQTVRQPGTQSSEQTTLPSGMQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G ++ E G+ T D A+ G +F ++ P G TRDG F+V +G Sbjct: 68 IGTGVRPVTTERLHTQGNLSQTSNSKDLAINGQGYFEVQMPDGTSAYTRDGSFQVDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIP----QKDEIFNVGEKGEI--SQKGKVIAT--MGLYSVDM 165 LV+ SG Y V ++P +D I +V ++G+ +Q G++ + M +D Sbjct: 128 LVTNSG-YTVQPGITIPANATSITVSRDGIVSVTQQGQTNPTQVGQLTLSTFMNDAGLDS 186 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + +E TP ++ +G+ + +G++E SN N E+ MI + + Sbjct: 187 LGENLYQETQASGAATQSTPGQNGAGL-LYQGYVETSNVNVAEELVSMIQTQRAY 240 >gi|138896905|ref|YP_001127358.1| flagellar basal-body rod protein [Geobacillus thermodenitrificans NG80-2] gi|134268418|gb|ABO68613.1| Flagellar basal-body rod protein [Geobacillus thermodenitrificans NG80-2] Length = 345 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 39/264 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---------------IS 57 LA ++R+ + +N++N +T G++ + N ++ + I Sbjct: 82 LAQQRRVDWLTNNLANAETPGYKADAGAMRAFPELLMNRLEDESIPSAPPRAVPTQTAIG 141 Query: 58 FVASG---KEYLSK-EVGSFISTGTELDFAL-------------EGDAWFALESPRG-II 99 + +G +E + G TG D AL G +FA+E+ +G Sbjct: 142 LLNTGVYTQELIPNFRQGDIKETGLSTDVALVDGQVPVDPTTGERGTLFFAVENDQGETR 201 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 TR+G F ++ D L + G Y VLD I IP E F V + G I+ + + IA +G Sbjct: 202 YTRNGHFTLSPDDYLTTQDGWY-VLDGNGERIAIPS--ESFTVRDDGTITAENRTIARLG 258 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMIHLT 217 + + V+ N P P + VT VK+GF+E SN + M ++ Sbjct: 259 VVFAANPKTVVKEGNGLFRSTDGPLP-QAPGNVTYMVKQGFIERSNVDIERTMTDLLAAY 317 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + F + +I ++S+ +A+ + Sbjct: 318 RAFEANQKIIQAYDRSLDKAVNEV 341 >gi|148546708|ref|YP_001266810.1| flagellar basal body rod protein FlgF [Pseudomonas putida F1] gi|148510766|gb|ABQ77626.1| flagellar basal-body rod protein FlgF [Pseudomonas putida F1] Length = 246 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 50/236 (21%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q AL Q+ A+N++N T GF + D++Q S G + ++ Sbjct: 12 ASQNALAQKAH--ANNLANISTNGF--------------QRDLEQARSMPVFGDSFPARA 55 Query: 70 V------------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G + TG +LD + G+ + A+++P G R G + G L + Sbjct: 56 FAMTERPGTDFSEGPMVETGRDLDVTVSGNGFIAVQAPDGSEAYVRTGSLNIDALGVLRT 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-----LYSVDM------ 165 +G PVL PI IP + ++ VG G IS I +MG + VD Sbjct: 116 GNG-MPVLGNGG-PIAIPPEQKV-EVGSDGTIS-----IRSMGEDPRVMAEVDRIKLVNP 167 Query: 166 -SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++G + ++ G+ P + V V GFL+ SN N++ EM ++ L+++F Sbjct: 168 DTKGLTKGQD-GLIHTSSGQPADADVNVRVVSGFLQGSNVNAVEEMTSVLALSRQF 222 >gi|119477951|ref|ZP_01618051.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] gi|119448864|gb|EAW30106.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] Length = 261 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 56/267 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------------- 51 GL+AQ + RL+T+++N++N TVG++ V F +++ I+ Sbjct: 11 GLSAQ---DTRLATISNNLANAATVGYKRDSVVFEDLLYQIRRQPGAQSSQNTQLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 + + + + KE+ GS T LD A+ G +F + P G +R+G+F++ Sbjct: 68 VGTGVRVIGTQKEFSD---GSVQITEKPLDLAIVGRGFFEILMPDGTSAYSRNGQFQINA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----------GKVIAT--- 157 DG +V+A G + I +P + ++ G + + G + T Sbjct: 125 DGEIVNARGL-----LLQPSITVPDDAQTVSISSDGIVEAQIAGQAAAQTLGNITVTNFI 179 Query: 158 --MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMG 211 GL S+ S F+ SG TP + G+ +++G LE+SN + + E+ Sbjct: 180 NPTGLQSIG-SNLFIETAASG-------TPQQGEPGIDGLGRLEQGALENSNVDVVEELV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 MI TQ+ + + + ML+ I Sbjct: 232 SMIT-TQRTYEMNSKVISTADQMLQYI 257 >gi|303248240|ref|ZP_07334503.1| flagellar basal-body rod protein FlgF [Desulfovibrio fructosovorans JJ] gi|302490378|gb|EFL50289.1| flagellar basal-body rod protein FlgF [Desulfovibrio fructosovorans JJ] Length = 261 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 18/155 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + L+ E RL+ A+N++N +T G++ +V F + +D Sbjct: 1 MEMSMLSAVFGALSTELRLNLSANNLANVNTTGYKRDRVSFEDTFLRYAHDYHMDPRGNL 60 Query: 61 SGKEYLSK----------------EVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 KE L + G+ TG LD A++G +F + S TR+G Sbjct: 61 REKELLPRADLVATPRLAEQQIDFSQGALQLTGNPLDVAIQGQGFFKVASGGTTYYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 F G LV+ YPV+ P+QIP +I Sbjct: 121 AFHRDAQGMLVTDQ-NYPVIGNGG-PVQIPDGRDI 153 >gi|218778868|ref|YP_002430186.1| hypothetical protein Dalk_1015 [Desulfatibacillum alkenivorans AK-01] gi|218760252|gb|ACL02718.1| Flagellar hook protein FlgE [Desulfatibacillum alkenivorans AK-01] Length = 693 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 22/126 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ L ++ + DN++N TVGF++ +V F +V+ Q +S SG L Sbjct: 10 GISGMNTLGNSMTVIGDNIANVSTVGFKSSRVTFQDVLA-------QTVS-TQSGTGQLG 61 Query: 68 KEV-----------GSFISTGTELDFALEGDAWFALESPRGIIL---TRDGRFKVTDDGS 113 + GS ST + D A+ G+ +F + P + L TR G F+ +DG+ Sbjct: 62 RGAAMGDITGIFSQGSLESTDSATDLAIGGEGFFVVRDPENVNLEYFTRAGEFRFDEDGN 121 Query: 114 LVSASG 119 V+ SG Sbjct: 122 FVNPSG 127 >gi|34497159|ref|NP_901374.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] gi|34103016|gb|AAQ59379.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] Length = 393 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 18/119 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKIS 57 SF I L+ A+ +L +V+DN++N+ T GF++ +V F S+ +G N Q I Sbjct: 2 SFEIALSGINAVNNQLGSVSDNIANSGTYGFKSGRVTFASAYAGSQAMGVNANPNSQNI- 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 G+ G ++TG LD A++G ++ S G + +R G F DG LV Sbjct: 61 ----GRN------GGLVNTGRALDAAIDGRGFYVSRSVAGAVSYSRVGIFDTDKDGYLV 109 >gi|239628978|ref|ZP_04672009.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519124|gb|EEQ58990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 246 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF---RTIKVKFSEVVGAIKNDIDQKI- 56 M + F + L ++ L A+N++N T G+ R +K F+E + N Q + Sbjct: 1 MFSGFYTAASGMLMNQRSLDMAANNIANVKTSGYKPKRLVKTTFNEQLVRQMNGQTQGLG 60 Query: 57 --SFVASG-KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 S ++ G +E + + TG D A+ GD +F ++ G LTR+G FK ++G+ Sbjct: 61 QGSTISIGTREMTTHGQAPVVDTGQTYDLAINGDGFFVIQGTDGQYLTRNGHFKRDEEGN 120 Query: 114 LV 115 L+ Sbjct: 121 LI 122 >gi|331666547|ref|ZP_08367421.1| putative flagella basal body rod protein [Escherichia coli TA271] gi|331065771|gb|EGI37655.1| putative flagella basal body rod protein [Escherichia coli TA271] Length = 245 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRAD-------MAMATND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNA 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTADGFPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|331645419|ref|ZP_08346523.1| putative flagella basal body rod protein [Escherichia coli M605] gi|323975929|gb|EGB71023.1| fagellar hook-basal body protein [Escherichia coli TW10509] gi|331045581|gb|EGI17707.1| putative flagella basal body rod protein [Escherichia coli M605] Length = 245 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRAD-------MAMATND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTSDGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|238793999|ref|ZP_04637617.1| Flagellar basal-body rod protein flgF [Yersinia intermedia ATCC 29909] gi|238726631|gb|EEQ18167.1| Flagellar basal-body rod protein flgF [Yersinia intermedia ATCC 29909] Length = 251 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 23/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA+ +LEQ+ T A+N++N T GFR V I + V + + Sbjct: 11 AARQSLEQQAVT-ANNLANASTPGFRAQLSAMRAV--PIDGPSMATRTMVTASTPGVDIS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ +G LD AL+ D + A++ P G TR+G +V +G + YP++ + Sbjct: 68 QGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANGQMTVQG--YPLMG-DN 124 Query: 129 VPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIP 182 PI++P + + + G IS IA +G + V + G V + G+ P Sbjct: 125 GPIEVPPQAAV-TIAADGTISALNAGDSPNTIAQLGQIKRVRANAGEVMHGDDGLFHLTP 183 Query: 183 PT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 T L + + + G LE SN ++ M MI + F + +DENE+ Sbjct: 184 ATQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMTDMIANARSFEMQMKVIHSVDENEQ 242 >gi|304321120|ref|YP_003854763.1| putative flagellar hook protein [Parvularcula bermudensis HTCC2503] gi|303300022|gb|ADM09621.1| putative flagellar hook protein [Parvularcula bermudensis HTCC2503] Length = 446 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 20/135 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A +L+ +ADN+SN++T+G++ +F +V ID + + Sbjct: 3 ISSSLNAGVAGLATNAVKLAAIADNISNSETIGYKRAVAEFQSLV------IDSGPNAYS 56 Query: 61 SG----KEYLS-KEVGSFISTGTELDFALEG---------DAWFALESPRGIILTRDGRF 106 +G Y+ + GS I TG D A+ G D A+ + R ++LT G F Sbjct: 57 AGGVRATPYIDVDDQGSLIGTGNATDLAIAGRGLLPVTNQDGAQAVTAERQLLLTATGSF 116 Query: 107 KVTDDGSLVSASGKY 121 +DG L + SG + Sbjct: 117 TPDEDGYLRTTSGLF 131 >gi|188586026|ref|YP_001917571.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350713|gb|ACB84983.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 508 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDID 53 M S G++ + RL T+ +N++N +T GF+ +V F E A Sbjct: 1 MLRSMYSGVSGLRNHQTRLDTIGNNVANVNTAGFKGDRVTFQDAFNQTLEAASAPNERGG 60 Query: 54 QKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 V G S + GS +TG + D A+EGD +F + + + TR G F V Sbjct: 61 TNPQQVGLGMNIGSMDTIHTQGSLENTGRDTDLAIEGDGFFVVNDGQSDMFTRVGNFGVD 120 Query: 110 DDGSLVSASGKYPVLDMA 127 +G+LVS Y V A Sbjct: 121 SEGNLVSQGTGYKVQGYA 138 >gi|54308097|ref|YP_129117.1| flagellar hook protein FlgE [Photobacterium profundum SS9] gi|46912523|emb|CAG19315.1| putative flagellar hook protein FlgE [Photobacterium profundum SS9] Length = 435 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 12/126 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQKISFV 59 FNI L+ A ++ L+T ++N++N +T GF+ + +F +V + K + Sbjct: 3 FNISLSGIGASQKDLNTTSNNIANANTYGFKESRAEFGDVYSSSIFSNAKTTTGGGVQTS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLV 115 +++ GS I T +D + G +FA+ P+ LTR+G F + D +V Sbjct: 63 VVAQQF---HEGSSIYTNNPMDLRISGSGFFAVADDKLQPQNSNLTRNGAFHLNKDNQIV 119 Query: 116 SASGKY 121 ++ G+Y Sbjct: 120 NSEGQY 125 >gi|259908810|ref|YP_002649166.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96] gi|224964432|emb|CAX55941.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96] gi|283478792|emb|CAY74708.1| Flagellar basal-body rod protein flgG [Erwinia pyrifoliae DSM 12163] gi|310767292|gb|ADP12242.1| Flagellar basal-body rod protein [Erwinia sp. Ejp617] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 114/248 (45%), Gaps = 31/248 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF--VASGKEYLSKE 69 + +A+N++N T GF+ + F +++ GA ++ S + +G ++ E Sbjct: 19 MDVIANNLANVSTNGFKRQRAVFEDLMYQTLRQPGAQSSEQTTLPSGLQIGTGTRPVATE 78 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVL 124 G+ T + D A+ G +F+++ P G TRDG F+ +G LV+++G +PV Sbjct: 79 RLHNQGNLSQTDSSKDVAINGQGFFSVQLPDGTAAYTRDGSFQTDQNGQLVTSAG-FPVQ 137 Query: 125 DMASVPIQ----IPQKDEIFNVGEKGEIS--QKGKVIATM-----GLYSVDMSQGFVRRE 173 +P +D + +V ++G+ + Q G++ + GL S M + + Sbjct: 138 PAIVIPANSLSMTISRDGVVSVTQQGQANPVQVGQLTLSTFMNDAGLSS--MGENLYQET 195 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + +PN P + +G T+ +G++E SN N E+ MI TQ+ I + Sbjct: 196 QASGAPN-ESNPGNNGAG-TLYQGYVETSNVNVAEELVSMIQ-TQRAYEINSKAISTSDQ 252 Query: 234 MLEAIRNI 241 ML + I Sbjct: 253 MLAKLTQI 260 >gi|187926954|ref|YP_001893299.1| flagellar basal body FlaE domain protein [Ralstonia pickettii 12J] gi|241665283|ref|YP_002983642.1| flagellar hook protein FlgE [Ralstonia pickettii 12D] gi|187728708|gb|ACD29872.1| flagellar basal body FlaE domain protein [Ralstonia pickettii 12J] gi|240867310|gb|ACS64970.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] Length = 402 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F GL+ A + L + N++N +TVG++ +F +V VGA N + Q + Sbjct: 3 FQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQVGQGVEVT 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G+ TG LD A+ G ++ + ++ G + +R+G+F+ +G ++SA Sbjct: 63 RVSQSFTQ---GNVTITGNPLDIAINGTGFYRMVDTASGQVSYSRNGQFQTDKNGYIISA 119 Query: 118 SGK 120 +G+ Sbjct: 120 TGQ 122 >gi|182418416|ref|ZP_02949710.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521] gi|237666817|ref|ZP_04526802.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377798|gb|EDT75342.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521] gi|237658016|gb|EEP55571.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 259 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDM--- 126 GSF ST + DFA++G +F + G + TRDG FKV G L++ G + + Sbjct: 84 GSFKSTDKQTDFAIDGRGFFVARNANGQQVYTRDGNFKVNQQGYLITNDGCEVMGNNNTT 143 Query: 127 -ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-SQGFVRRENSGISPNIPPT 184 A+ PI + + F++ I G V AT L +VD ++ + E G + Sbjct: 144 GATEPIYVGNMN--FSLDSNNNIDLAG-VGATHKLVTVDFDNEDYKNLEPLGDNYVTTAN 200 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P+ + + V V + LE SN +S EM +++ + ++F + I ++++ +A Sbjct: 201 PIYN-ARVNVVQNALESSNVDSTDEMIKLMQVKRQFETNQKFIKMQDETVQKA 252 >gi|163789641|ref|ZP_02184079.1| flagellar hook protein [Carnobacterium sp. AT7] gi|159875173|gb|EDP69239.1| flagellar hook protein [Carnobacterium sp. AT7] Length = 289 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 54/291 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G+ ++ ++ +++N++N +T F+T +V+F +++ I+ Sbjct: 1 MLKSLYSGVTGMKNIQTKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQTGINAQQ 60 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALE-GDA-WFALESPRGIILTRDGRFKVTDDG 112 V G + S + GS STG LDF +E GD+ +F ++ TRDG F +G Sbjct: 61 VGLGVQVGSIDTVMSGGSLQSTGRALDFGIENGDSSFFTVKEGDNTFYTRDGGFYTDPNG 120 Query: 113 SLVSASGKYPVLDMASVP--------------------IQIPQ-------KDEI--FNVG 143 +LV++ G +A+ P I IPQ K ++ ++V Sbjct: 121 NLVTSGGLKVQGFVANPPAVNDTNFNPDTFVDGKTMSAITIPQSIGEGADKADLQSYSVD 180 Query: 144 EKGEI-----SQKGKVIATMGLYSVDMSQG--------FVRRENSGISPNIPPTPLEDLS 190 KG I K V+ +GL S G + NSG +P +P E Sbjct: 181 SKGFIVGSYSGGKSMVLGRVGLTSFSNPDGLQKSGGNLYTETANSG-APE-AGSPGEPGY 238 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G +V+ GFLE SN + E +MI ++ + + + I ++ +MLE + N+ Sbjct: 239 G-SVRSGFLEMSNVDLANEFTEMIVTSRSYQANSRSITTSD-TMLEELINL 287 >gi|326386930|ref|ZP_08208544.1| hypothetical protein Y88_1568 [Novosphingobium nitrogenifigens DSM 19370] gi|326208610|gb|EGD59413.1| hypothetical protein Y88_1568 [Novosphingobium nitrogenifigens DSM 19370] Length = 270 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 104/259 (40%), Gaps = 33/259 (12%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV--GSF 73 + LS + +N++N DT GF+ V FS +V A + I + S + ++++ G Sbjct: 14 QTDLSVIGNNIANADTNGFKKSSVDFSNLVAASAFTNPKNIVGIGSTVQSINQDFAQGGV 73 Query: 74 ISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSASGK----YPVLDMA 127 TG+ LD + GD +F S + TR+G F + G L SG +P Sbjct: 74 KQTGSALDLMISGDGFFTTSSAVTGQVYYTRNGSFSMDGQGYLTDGSGNRLQVFPTDSSG 133 Query: 128 SVPIQIPQKDEI------------FNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFV 170 +V P ++ V G IS VI + L S QG Sbjct: 134 NVTSTTPGSAQVPLTNAAGSQFSGATVAADGSISVSYADGSNSVIGKVALASFVAPQGLK 193 Query: 171 RRENSG-ISPNIPPT-----PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + +S S I T P G ++ G LE SN + EM +I Q F + Sbjct: 194 QVGSSNYTSTGISGTATYGQPSTGQYG-SLMSGSLEASNVDLSSEMVNLITAQQYFQANA 252 Query: 225 TLIDENEKSMLEAIRNIAS 243 ID N ++ +AI N+ S Sbjct: 253 KAIDAN-TTINDAIINLKS 270 >gi|255099439|ref|ZP_05328416.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-63q42] Length = 253 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 24/237 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T F A A + +L +++N++N+D+ G++ I +++S++V + N + S+ Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLVDEVLN----RPSYPT 56 Query: 61 SGKE------------YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 +GK+ + E G+ T ++ + A++G+ +F + G TR+G F Sbjct: 57 NGKDISTGTGAKATAPMRNYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYAYTRNGGFN 116 Query: 108 VTDDGSLVSASGKYPVLDM---ASVPIQIPQKDEI-FNVGEKGEISQKGKVIATMGLYSV 163 V G +V +G +LD+ A D V GE+ K I + LY Sbjct: 117 VDALGKIVDDNGN--ILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQP 174 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +Q F+ E + ++ + V + +G+ E SN + E +I + F Sbjct: 175 IGTQNFI-SEGDSLFVATDAAQIKQVEKVDIVQGYRERSNVSLQEEFVDLIATQRAF 230 >gi|224373466|ref|YP_002607838.1| flagellar basal body and hook protein [Nautilia profundicola AmH] gi|223589855|gb|ACM93591.1| flagellar basal body and hook protein [Nautilia profundicola AmH] Length = 642 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M TSF G+ + + + DN++N +T G++ +FS + N D S + Sbjct: 1 MTTSFYNGITGLKSFQYGIDIWGDNIANINTTGYKEQIPEFSTLFSETLNS-DPVYSDIG 59 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 G + S + GS I+T D ++ G+ W A++ TR G F G LV Sbjct: 60 MGSKLSSTAINLDQGSLINTDNPFDVSINGEGWLAVKRYNDTYYTRTGSFTRDAQGYLVD 119 Query: 117 ASGKYPVLDMASVPIQ 132 +G Y ++ A+ IQ Sbjct: 120 DNGDYLLVANANNLIQ 135 >gi|254470407|ref|ZP_05083811.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] gi|211960718|gb|EEA95914.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] Length = 260 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 16/142 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIK 49 + +I A E + +++N++N T G++ + F +++ G I Sbjct: 3 ALHIAATGMKAQELNVEVISNNVANMRTTGYKRQRADFQDLLYENQRRMGTETSDAGTIV 62 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 + Q S V + GS TG E D + G+ +F ++ P G I TRDG F Sbjct: 63 PNGVQIGSGVRTAATTRIMSPGSVTQTGNEYDVTIRGEGFFQIQRPDGTIGYTRDGSFAR 122 Query: 109 TDDGSLVSASGKYPVLDMASVP 130 + G LV+ G YPV ++P Sbjct: 123 SQTGQLVTKDG-YPVQPGITIP 143 >gi|291528558|emb|CBK94144.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1] Length = 272 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 45/265 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A + + T+A+N+SN +T GF+ + +F K+ + Q I ++ +K VG+ Sbjct: 14 AEQTNVDTIANNLSNVNTTGFKGQRTEF-------KSLLYQTIQTRSTSGNGDAKPVGAQ 66 Query: 74 ISTGTEL-------------------DFALEGDAWFALE-SPRGIILTRDGRFKVTDDG- 112 + GT + DFALEGD +FA+ + TR+G F + G Sbjct: 67 VGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGN 126 Query: 113 --SLVSASGKYPVLDMASVPIQIPQ--KDEIFNVGEKGEI---SQKGKVI---ATMGLYS 162 ++++ S PV+D I +P E + GE G + + +G I + +Y Sbjct: 127 GQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQ 186 Query: 163 VDMSQGFVRRENSGISPNIPP-TPLEDLSGVTVKR-----GFLEDSNANSMYEMGQMIHL 216 + G ++ S ++ P+ + + +K G+LE SN EM +I + Sbjct: 187 FNNPSGLEKQSGSLLAATANSGNPMLEAANPALKNSKVVTGYLEGSNVQVADEMVNLI-V 245 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 Q+ + + SMLE N+ Sbjct: 246 AQRAYELNSKAITTADSMLETANNL 270 >gi|163744349|ref|ZP_02151709.1| flagellar basal-body rod protein FlgG [Oceanibulbus indolifex HEL-45] gi|161381167|gb|EDQ05576.1| flagellar basal-body rod protein FlgG [Oceanibulbus indolifex HEL-45] Length = 261 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/132 (22%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND----- 51 + +I +A + + +++N++N +T GF+ + F +++ GA+ ++ Sbjct: 3 ALSIAATGMMAQQTNVDVISNNIANANTTGFKASRAAFQDLIYQSMQREGALTSEAGSTR 62 Query: 52 ---IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 ID + +G L+ + G ++T +L+ A++G +F++ P G TRDG F+ Sbjct: 63 PVGIDIGMGVQTAGTVRLNTQ-GGMVATENQLNVAIDGRGYFSVTLPDGNQAFTRDGSFQ 121 Query: 108 VTDDGSLVSASG 119 ++ +G +V+ G Sbjct: 122 LSPEGEIVTMQG 133 >gi|149184207|ref|ZP_01862525.1| hypothetical protein ED21_25853 [Erythrobacter sp. SD-21] gi|148831527|gb|EDL49960.1| hypothetical protein ED21_25853 [Erythrobacter sp. SD-21] Length = 261 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 8/116 (6%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE--VGSF 73 + L ++ N++N++T GF+ + +FSE+V + I + + + +++ +G Sbjct: 5 QTSLGVISHNIANSETYGFKRSRTEFSEIVAGSALTNPRMIQGIGASVKSITQNFALGPI 64 Query: 74 ISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSASGK----YPV 123 TG+ LD A+ GD +F S + TR G F ++ G++V +SG +PV Sbjct: 65 EQTGSALDLAITGDGFFTTRSAADGSTLYTRSGSFSLSGTGNIVDSSGNRLQLFPV 120 >gi|239817165|ref|YP_002946075.1| flagellar basal body FlaE domain protein [Variovorax paradoxus S110] gi|239803742|gb|ACS20809.1| flagellar basal body FlaE domain protein [Variovorax paradoxus S110] Length = 404 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F+ G++ A L + +N++N+ TVGF++ F +V + + +S + Sbjct: 3 FSQGISGLSAAAANLDVIGNNIANSGTVGFKSGAATFQDVYAGSRVGLGVAVSGIVQ--- 59 Query: 65 YLSKEVGSFISTGTELDFA-LEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + GS ++ LD A L GD +F L SP G ++ +R+G+F DG +V+A+G Sbjct: 60 --NFTQGSVQTSSRPLDVAILNGDGFFRLSSPSGEVMYSRNGQFTRDKDGFIVNAAG 114 >gi|193222346|emb|CAL62046.2| Flagellar basal-body rod protein FlgG (Distal rod protein) [Herminiimonas arsenicoxydans] Length = 260 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + ++ +++N++N T GF+ + F +++ GA + + S + Sbjct: 11 GLDAQ---QTQMDVISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQTELPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G ++ E G+ T + A+EGD +F + P G TRDG F+ + G Sbjct: 68 LGTGVRPVATERIHTQGNLQLTSNAKNLAIEGDGFFQVLMPDGTTAYTRDGSFQTDNQGQ 127 Query: 114 LVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLY 161 +V++SG +P+ ++P I I +D I +V G + Q I GL Sbjct: 128 MVTSSG-FPIQPAITIPENATSITI-SRDGIVSVTVSGTTAATEIGALQLATFINPAGL- 184 Query: 162 SVDMSQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 MS+G +V SG + TP + +G+ +K+ ++E SN N + E+ MI TQ Sbjct: 185 ---MSRGENLYVETTASGTANT--NTPGSNGAGL-LKQNYVETSNVNVVEELVSMIQ-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + ML+ + I Sbjct: 238 RAYEINSKAITTSDQMLQRLTQI 260 >gi|91204383|emb|CAJ70883.1| strongly similar to flagellar distal rod protein [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 41/254 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGKEYLSK 68 L V++N+SN +T GF+ +V F +++ A +I I + Sbjct: 19 LDNVSNNLSNINTTGFKRSQVNFQDLLYSKRYIAGSESAQGFEIPAGIQLGGGVRTISIS 78 Query: 69 EV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 +V G+ ++T ELD A++G +F ++ G I TRDG F++ G +V+A G P+ Sbjct: 79 KVFSQGNHVNTERELDLAIQGKGFFQIQQSDGSIAYTRDGSFQLNSKGEVVTADG-LPL- 136 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK-----------GKVIATM-----GLYSVDMSQG 168 S I I EI ++G G + K G+++ TM GL S+ + Sbjct: 137 ---SPSITITNATEI-SIGTDGTVYVKGSDPSGTLQNVGQIMLTMFPNPSGLDSLGKNL- 191 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 ++ SG SP I E +G + +GFLE+SN ++ E+ +I + + + I Sbjct: 192 YLETMASG-SP-IVTVAGEQGTG-EIYQGFLENSNVETVTELVSLITAQRAYEINSRAIS 248 Query: 229 ENEKSMLEAIRNIA 242 +++ ML I ++A Sbjct: 249 ASDE-MLSTINSMA 261 >gi|154250212|ref|YP_001411037.1| hypothetical protein Fnod_1537 [Fervidobacterium nodosum Rt17-B1] gi|154154148|gb|ABS61380.1| protein of unknown function DUF1078 domain protein [Fervidobacterium nodosum Rt17-B1] Length = 770 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 16/129 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV----KFSEVVGAIKNDID--- 53 M S G++ +Q + V++N+SN +T+GF+ +V FS+++ + D Sbjct: 1 MMRSLYSGVSGLQGFQQEIDVVSNNISNVNTIGFKGARVTYATNFSQILDMSRRATDNTG 60 Query: 54 ----QKISF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 ++I + VAS + +++ GSF +TG + D A++G+ +F L + + TR G F Sbjct: 61 GTNPKQIGYGIRVASIDKIMNQ--GSFQNTGKKTDLAIQGEGFFILSNGQRQFFTRAGNF 118 Query: 107 KVTDDGSLV 115 + +G++V Sbjct: 119 DLDLNGTIV 127 >gi|134300225|ref|YP_001113721.1| hypothetical protein Dred_2386 [Desulfotomaculum reducens MI-1] gi|134052925|gb|ABO50896.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 266 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 37/243 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKND----IDQKISFVASG 62 G + A + +L T+ +N++N +T F+ + F E+V AI D + SG Sbjct: 9 GASGMRAHQLKLDTIGNNIANINTTAFKKNRTDFGEIVRQAIGEDGIPAANDPRPEGGSG 68 Query: 63 KEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI----ILTRDGRFKVT---DD 111 +S + G I TG +LD A+EG +F + G TRDG F +T D+ Sbjct: 69 VRIVSLARVIDQGDLIQTGRDLDLAIEGQGFFKVTPATGDDDIEYYTRDGSFYITTIDDE 128 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKV--IATMGLYSVDM 165 LV++SG V D + + ++V EKG + + GK + + L++ Sbjct: 129 TVLVNSSGYKLVWDGE----LDAETYKAYSVDEKGTVWGQRIEDGKTEEVGNIELFTFPA 184 Query: 166 SQGFVRR--------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 G V + E SG P ED G ++ G+LE SN + EM MI Sbjct: 185 PSGLVSKGSNLYMATEASG--EETSGVPGEDGIG-SIYSGYLERSNVDLATEMIGMIEAQ 241 Query: 218 QKF 220 + + Sbjct: 242 RAY 244 >gi|330967091|gb|EGH67351.1| flagellar hook protein FlgE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 586 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ TVGF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTVGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 A+ + + + S ++G LD ++G+ +F + + TR G F Sbjct: 62 AATQQNF--NQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAF 107 >gi|327480020|gb|AEA83330.1| flagellar basal body FlaE domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 558 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 20/123 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A + L+ +N++N TVGF+ + +FS+V A S + +GK Sbjct: 2 SFNIGLSGLRAASKDLNVTGNNIANAGTVGFKQSRAEFSDVYAA---------SVLGTGK 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 V G+ T LD A+ G+ +F + + + TR G F +G Sbjct: 53 NPQGSGVLMSNISQQFNQGNINYTQNALDLAINGNGFFQVSNNGAVSYTRAGYFGTDREG 112 Query: 113 SLV 115 LV Sbjct: 113 FLV 115 >gi|260893854|ref|YP_003239951.1| fagellar hook-basal body protein [Ammonifex degensii KC4] gi|260865995|gb|ACX53101.1| fagellar hook-basal body protein [Ammonifex degensii KC4] Length = 260 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 24/231 (10%) Query: 10 AAQLALEQRLSTV-ADNMSNTDTVGF---RTIKVKFSEVV-GAIKNDIDQKISFVASG-- 62 A+ L L+Q L V A+N++N T GF R F+EV+ ++ + I G Sbjct: 9 ASGLNLQQALLDVTANNLANLSTPGFKQDRLTATTFAEVLLYRLEREGITAIGTTNYGTL 68 Query: 63 --KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + Y G+ + TG D AL G+ + ++P+GI R G V +G L +A+G Sbjct: 69 PERSYTDFTQGALVETGNYRDVALVGEGFLVADTPQGIRYFRSGTLFVDREGYLTTATGD 128 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ-----------GF 169 VL PIQ+ +E F + G + G+ + + + + Q G Sbjct: 129 -RVLGEGRRPIQV--GEESFTILPDGTVEVAGRTVGRLLVVRIINPQQREGELPIWDSGI 185 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + +E + + + G V++G+LE +N + EM ++ + + Sbjct: 186 LAKEGRNYYRLVGGSEAPAV-GTLVRQGWLEAANVDLAGEMARLCTCLRAY 235 >gi|110677963|ref|YP_680970.1| flagellar hook protein FlgE, putative [Roseobacter denitrificans OCh 114] gi|109454079|gb|ABG30284.1| flagellar hook protein FlgE, putative [Roseobacter denitrificans OCh 114] Length = 436 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 18/146 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A QRL++++DN++N+ T G++ ++ F +V + V Sbjct: 3 ISSSLNAGVAGLQTNSQRLASISDNIANSSTFGYKRVQTDFESMVLS-SGGGAYAAGGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL-----------ESPRGIILTRDGRFKVT 109 + + L E G+ +ST D A+ G + ++P + LT G F+ Sbjct: 62 ANTQRLIDERGTLVSTSNSTDLAVRGGGMLPVAQAAQVQTAGTDAP--MFLTTTGSFRPD 119 Query: 110 DDGSLVSASG----KYPVLDMASVPI 131 DG L S SG +P S+P+ Sbjct: 120 ADGYLTSQSGLVLMGWPAAADGSIPV 145 >gi|310641552|ref|YP_003946310.1| fagellar hook-basal body protein [Paenibacillus polymyxa SC2] gi|309246502|gb|ADO56069.1| Fagellar hook-basal body protein [Paenibacillus polymyxa SC2] Length = 272 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 50/278 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +T GF++ +V F +++ + A Sbjct: 1 MLRSMYSGVSGMKGFQTKLDVIGNNIANVNTTGFKSSRVMFKDILSQTSSGAS------A 54 Query: 61 SGKEYL---SKEVG---------------SFISTGTELDFALEGDAWFAL------ESPR 96 SG+E +K++G S ++T D L GD +F + E+P Sbjct: 55 SGEETAGSNAKQIGLGSTVSSIDTLHLPGSAMTTNNPTDLRLNGDGFFLVKMNADQEAP- 113 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----- 151 LTR G F + + LV++ G + VPI + F++ + G I Q Sbjct: 114 --YLTRAGDFHIDGNRHLVTSDGFFVADSGGGVPITLADDVTAFSISQDGTIVQTLASGE 171 Query: 152 ---------GKVIATMGLYSVDMS--QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLE 200 KVI GL + S + V N G + +D +G + G LE Sbjct: 172 TDNATKIGVTKVINPEGLEKIGGSLYRATVNSGNEGEITAMEANSADDGTGAIIS-GQLE 230 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 SN + E +MI + F + + +I +++ + E + Sbjct: 231 MSNVDLTGEFTEMIVAQRGFQANSRIITTSDEVLQEVV 268 >gi|51597637|ref|YP_071828.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|186896771|ref|YP_001873883.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis PB1/+] gi|51590919|emb|CAH22575.1| Putative FlgE-like flagellar hook protein [Yersinia pseudotuberculosis IP 32953] gi|186699797|gb|ACC90426.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis PB1/+] Length = 414 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 12/161 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 SF+I A A ++L+T+++N++N+ T GF+ + +FS + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQ-----SQPLGVAVSGV 56 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG-- 119 + +SK+ G TG LD A+ G +F + ES TR G F+ DG LV+ G Sbjct: 57 SQNISKD-GQKEKTGMGLDLAISGGGFFVVRESSGDKAYTRAGMFRSDVDGYLVNGQGMK 115 Query: 120 --KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 YP ++ I +I N G + S++ +A + Sbjct: 116 LQGYPADAAGNIQAGIISDLKINNAGVPAKASEQLDFMANL 156 >gi|170737038|ref|YP_001778298.1| flagellar basal body FlaE domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169819226|gb|ACA93808.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 389 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 8/113 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI LA A+ +L+ +++N++N+ T+GF++ + F+ I+ S V+ G Sbjct: 2 SFNIALAGINAINGQLNQISNNIANSGTLGFKSGRANFASSY------INAMPSGVSIGS 55 Query: 64 EYLSKEV-GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 S +V G+F +TG LD A+ G +F G ++ +R G F + +G++ Sbjct: 56 TSQSMDVTGNFSATGRGLDAAIAGKGFFISRDTDGSMVFSRAGVFNIDKNGNV 108 >gi|312884834|ref|ZP_07744526.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] gi|309367486|gb|EFP95046.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] Length = 398 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS A+ N + VAS Sbjct: 2 SFNIALSGLDATNTDLNTISHNIANASTTGFKGARTEFS----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G TR G F D LVS +G Sbjct: 58 QNFDKN-GSISGTGRPMDLAINGTGFFVTKDSTGQTQYTRAGVFNRDKDNFLVSNTG 113 >gi|294140184|ref|YP_003556162.1| flagellar hook protein FlgE [Shewanella violacea DSS12] gi|293326653|dbj|BAJ01384.1| flagellar hook protein FlgE [Shewanella violacea DSS12] Length = 454 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 13/127 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L+T A+N++N +++GF+ + +F++V N I S A G Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADV---YANSIFAN-SKTAVGG 57 Query: 64 EYLSKEV------GSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSL 114 + +V GS T LD A+ G +F S + TR G FKV L Sbjct: 58 GVTTSQVAQQFHQGSLQFTNNALDMAINGGGFFVTSSELEAKDHSFTRAGAFKVNSADYL 117 Query: 115 VSASGKY 121 V + G Y Sbjct: 118 VDSQGNY 124 >gi|319403978|emb|CBI77566.1| Flagellar hook protein FlgE [Bartonella rochalimae ATCC BAA-1498] Length = 402 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 23/137 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLS VADN++N T+G++ V+FS V G +K+ I IS Sbjct: 10 GVSGMNAQGTRLSGVADNVANAGTIGYKRTNVQFSNYVTPSGQYAYVSGGVKSHIGHDIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + +TG D + G+ +F + G LTR G F DG L + Sbjct: 70 IGGPAR-----------ATGRSGDTMIHGNGFFRVADENGKEFLTRAGSFVRDKDGYLRN 118 Query: 117 ASGKYPVLDMASVPIQI 133 +G Y +L+ IQI Sbjct: 119 TAGYY-LLNEDGEKIQI 134 >gi|303239788|ref|ZP_07326312.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592725|gb|EFL62449.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 259 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 46/260 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKF--------------------SEVVGAIK--ND 51 A +++ +++N++N T G++ V + S VG ++ ND Sbjct: 14 ANNKQMDVISNNLANVSTNGYKKDTVVYESFPNALVRRVNDTESTLNPSGKVGDVQLGND 73 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFAL--EGDAWFALESP--RGII---LTRDG 104 + Q ++ SG+ STG LD A+ A+F + P G + TRDG Sbjct: 74 VGQVFTYYTSGQ---------LASTGNNLDLAIGSSDSAFFTIGVPSENGELTEYYTRDG 124 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS-V 163 F + LV++ G Y V+ PI + + E F+V + G I Q G+V+ + + Sbjct: 125 SFCLNSAKQLVTSEG-YMVMGTDG-PITL--ESENFSVLDDGSIVQNGQVVDKLAIKDFT 180 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 D S +R+ + T ++ +GV VK+G+LE SN N + EM MI + + + S Sbjct: 181 DTST--LRKFGENLIQTTEETQEQEFNGV-VKQGYLEQSNVNVVNEMINMITVMRAYESN 237 Query: 224 TTLIDENEKSMLEAIRNIAS 243 +I + ++ +A+ + + Sbjct: 238 QKVIQALDGTLEKAVNEVGA 257 >gi|157165544|ref|YP_001467096.1| flagellar basal body rod protein FlgG [Campylobacter concisus 13826] gi|112799947|gb|EAT97291.1| flagellar basal-body rod protein FlgG [Campylobacter concisus 13826] Length = 262 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 119/266 (44%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDID 53 M S +A + ++ + N++N +T G++ + +F+ E G + Sbjct: 1 MMRSLYTAATGMIAEQTQIDVTSHNIANVNTYGYKKNRAEFADLMYQVMEYAGTATSQTT 60 Query: 54 QKISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + G + G F T LD + G+ +F ++ P G TR+G F Sbjct: 61 TSPTGIEVGLGVRPTAINKIFSQGYFKETSNNLDMVIAGNGFFQIQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGE--ISQKGKV-----I 155 K+ +G++V++ G Y ++ +VP Q D +V + GE ++Q G++ I Sbjct: 121 KLDANGTIVNSDG-YQLIPQITVPANATQISIGTDGTVSVLQAGETDMAQIGQIELANFI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL+S+ +++ SG + L+ L T+++GF+E SN + EM +I Sbjct: 180 NPAGLHSMG-DNNYLQTSASG-DVVVGVAGLDGLG--TIRQGFVEMSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ SMLE + + Sbjct: 236 GQRAYEANSKAITTSD-SMLEIVNGL 260 >gi|83747653|ref|ZP_00944689.1| FlgF [Ralstonia solanacearum UW551] gi|207728347|ref|YP_002256741.1| flagellar basal-body rod protein flgf [Ralstonia solanacearum MolK2] gi|207739736|ref|YP_002258129.1| flagellar basal-body rod protein flgf [Ralstonia solanacearum IPO1609] gi|300696914|ref|YP_003747575.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum CFBP2957] gi|83725705|gb|EAP72847.1| FlgF [Ralstonia solanacearum UW551] gi|206591593|emb|CAQ57205.1| flagellar basal-body rod protein flgf [Ralstonia solanacearum MolK2] gi|206593118|emb|CAQ60024.1| flagellar basal-body rod protein flgf [Ralstonia solanacearum IPO1609] gi|299073638|emb|CBJ53158.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum CFBP2957] Length = 245 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N+ T GF+ F V ++ D SFV + G +TG LD Sbjct: 23 ANNLANSSTTGFKAQIDAFHTV--GVQGDGSPTRSFVMASAIGTDMTPGPIETTGRSLDV 80 Query: 83 ALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 A++G +FA+++ G TR G F+V+ DG++ + SG+ PVL P+ +P Sbjct: 81 AIDGQGFFAVQTADGSEAYTRAGAFQVSADGTIETLSGQ-PVLGDGG-PVTLP 131 >gi|259908811|ref|YP_002649167.1| flagellar basal body rod protein FlgF [Erwinia pyrifoliae Ep1/96] gi|224964433|emb|CAX55942.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96] gi|283478793|emb|CAY74709.1| Flagellar basal-body rod protein flgF [Erwinia pyrifoliae DSM 12163] gi|310767291|gb|ADP12241.1| flagellar basal body rod protein FlgF [Erwinia sp. Ejp617] Length = 251 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 27/241 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA L+Q+ T A N++N T GFR ++ + V + + + V + Sbjct: 11 AASQTLDQQAVT-ASNLANASTPGFRA-QLNAARAVPVEGLSLPTR-TLVTASTPGADMS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ T LD A++GD W A+++ G TR+G +V+ G L + GK + D Sbjct: 68 QGALDYTERALDVAMQGDGWLAVQNDDGTEAYTRNGNMQVSPTGQL-TVQGKAVMGDGG- 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQ--------------KGKVIATMGLYSVDMSQGFVRREN 174 PI IPQ +I + G I+ K K++ +G G R Sbjct: 126 -PIAIPQGAQI-TIAADGSITALNPGDAPNATVQLGKLKLVKAVGNELTRGDDGMFRVSA 183 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENE 231 + + PL+ V V G LE SN + M MI ++F I + +DENE Sbjct: 184 AAQAQRGATLPLDPT--VKVMPGVLEGSNVKATQTMVDMIANARRFEMQMKIISSVDENE 241 Query: 232 K 232 + Sbjct: 242 Q 242 >gi|224532206|ref|ZP_03672838.1| flagellar hook-basal body complex protein [Borrelia valaisiana VS116] gi|224511671|gb|EEF82077.1| flagellar hook-basal body complex protein [Borrelia valaisiana VS116] Length = 282 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L V++N++N D VG++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PIVGKLGTGVEENEIYTLFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|150395503|ref|YP_001325970.1| flagellar hook protein FlgE [Sinorhizobium medicae WSM419] gi|150027018|gb|ABR59135.1| flagellar basal body FlaE domain protein [Sinorhizobium medicae WSM419] Length = 402 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 22/123 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVA+N++N +T G++ +FS ++ G ++ ++ IS Sbjct: 10 GVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGAYNSGGVQTEVRYSIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G+ T + D A++G +F +E G LTR G F +G+LV+ Sbjct: 70 -----------QQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRAGSFVPDSEGNLVN 118 Query: 117 ASG 119 A+G Sbjct: 119 AAG 121 >gi|73539452|ref|YP_299819.1| flagellar basal body rod protein FlgG [Ralstonia eutropha JMP134] gi|72122789|gb|AAZ64975.1| Protein of unknown function DUF1078 [Ralstonia eutropha JMP134] Length = 261 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 44/261 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + ++ +++N++N T GF+ + F +++ GA+ +D S + Sbjct: 11 GLDAQ---QTQMDVISNNLANVSTNGFKRGRAVFEDLMYQNIRQPGALSSDQTTLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G ++ E G+ TG D A+ G +F + P G TRDG F+V +G Sbjct: 68 LGTGVRPVATERIHTQGNPQQTGNSKDVAIIGQGFFQVAMPDGTTAYTRDGSFQVDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATM---- 158 LV++SG V+ A I IP V G +S Q G++ +AT Sbjct: 128 LVTSSGF--VIQPA---ITIPANTTSMTVARDGTVSVTQPGSSNNVQVGQLQLATFMNPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV-KRGFLEDSNANSMYEMGQMIHLT 217 GL S+ + +V+ + SG P T + L+G V ++ ++E SN N + E+ MI T Sbjct: 183 GLESMGENL-YVQTDASG----APNTTVPGLNGAGVLQQNYVEASNVNVVEELVSMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAI 238 Q+ I + + ML+ + Sbjct: 237 QRAYEINSKAVQTSDQMLQRL 257 >gi|307318929|ref|ZP_07598360.1| fagellar hook-basal body protein [Sinorhizobium meliloti AK83] gi|306895343|gb|EFN26098.1| fagellar hook-basal body protein [Sinorhizobium meliloti AK83] Length = 402 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 22/123 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVA+N++N +T G++ +FS ++ G ++ ++ IS Sbjct: 10 GVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGSYNSGGVQTEVRYSIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 + G+ T + D A++G +F +E G LTR G F +G+LV+ Sbjct: 70 -----------QQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRAGSFVPDSEGNLVN 118 Query: 117 ASG 119 A+G Sbjct: 119 AAG 121 >gi|237810461|ref|YP_002894912.1| flagellar hook protein FlgE [Burkholderia pseudomallei MSHR346] gi|237503327|gb|ACQ95645.1| flagellar hook protein FlgE [Burkholderia pseudomallei MSHR346] Length = 413 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ + L + +N++N +TVGF+ +FS+ V A+ N I + +AS Sbjct: 6 GLSGLVGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIG-TMLASV 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 ++ S+ G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Sbjct: 65 QQQFSQ--GTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNSQGLNL 122 Query: 120 -KYP------VLDMASVPIQIPQKD 137 Y + A+VP+Q P + Sbjct: 123 MGYAANANGVINTAATVPLQAPTTN 147 >gi|238919261|ref|YP_002932776.1| flagellar basal body rod protein FlgG [Edwardsiella ictaluri 93-146] gi|238868830|gb|ACR68541.1| flagellar basal-body rod protein FlgG, putative [Edwardsiella ictaluri 93-146] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 36/260 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +A+N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLEAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQTNLPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G E L + G+ T D A++G +F + P G TRDG F+V +G Sbjct: 68 LGTGVRPVATERLHSQ-GNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKV-----IATMGLY 161 LV+ASG + + ++P +D I +V +G+ + Q G++ I GL Sbjct: 127 QLVTASG-FQITPAITIPANATSMTIGRDGIVSVTLQGQAAPQQVGQLTLNTFINDAGLE 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 S M + + S SP TP + +G+ + +G++E SN N E+ MI TQ+ Sbjct: 186 S--MGENLYQETASSGSP-TESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQ-TQRAY 240 Query: 222 SITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 241 EINSKAISTSDQMLQRLTQL 260 >gi|170680219|ref|YP_001742374.1| flagellar basal body rod protein FlgF [Escherichia coli SMS-3-5] gi|170517937|gb|ACB16115.1| lateral flagellar rod protein LfgF [Escherichia coli SMS-3-5] Length = 245 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRAD-------MAMATND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTSDGIPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|57167708|ref|ZP_00366848.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|305433214|ref|ZP_07402370.1| flagellar basal-body rod protein [Campylobacter coli JV20] gi|57020830|gb|EAL57494.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|304443915|gb|EFM36572.1| flagellar basal-body rod protein [Campylobacter coli JV20] Length = 270 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 39/275 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + + Y +GS +T LD A+ DA++ +++ G I L+ Sbjct: 61 TRDASRFVNTTIDGVPQVSQGYTDFSLGSLKTTNNPLDLAITREDAFYLVQTKDGEIRLS 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ ++G LV+ G Y +L D + P I++P NV + G I G Sbjct: 121 KDGNFQLNEEGYLVNKQG-YRILSSDYFNNPQNAGIRLPNGAVYINVDKNGSIEVDGVQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEM---- 210 A + + VD + ++++ + T + DL V++GF + SN N + EM Sbjct: 180 ARLFIAQVDDIRA-LQKDGDNVYRIDDLTRIRDLDNSNAVRQGFSQGSNVNPVTEMVGLI 238 Query: 211 --GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +M+ + QK +T +D+ + EAI +A+ Sbjct: 239 EANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|157146224|ref|YP_001453543.1| flagellar basal body rod protein FlgG [Citrobacter koseri ATCC BAA-895] gi|157083429|gb|ABV13107.1| hypothetical protein CKO_01981 [Citrobacter koseri ATCC BAA-895] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANSLSITVGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|296122947|ref|YP_003630725.1| flagellar basal-body rod protein FlgG [Planctomyces limnophilus DSM 3776] gi|296015287|gb|ADG68526.1| flagellar basal-body rod protein FlgG [Planctomyces limnophilus DSM 3776] Length = 266 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 35/251 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVASGKEY-LSKEV---- 70 L T+A+N++N T GF+ + F ++ + D ++ G L V Sbjct: 20 LDTIANNLANAGTNGFKRSRTDFEDLYYQYYKLPGTQDTLGNYTPIGTAAGLGVRVAGTQ 79 Query: 71 -----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 G+ + TG +LD A+ GD +F + + TR G F V +G +V AS + Sbjct: 80 IDFSQGALLETGRQLDMAITGDGFFMVRGNNQLFYTRRGEFTVNSNGDVVLASAD--IGR 137 Query: 126 MASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLYSVDMSQGFV 170 + PI IP + +G +S Q + I GLY S + Sbjct: 138 LIDPPINIPPDTVDIGISAEGIVSVIQAGSTVQNQVGQIQLARFINPEGLYQAGESL-YA 196 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + SG P I P + G+ +++GFLE SN E+ +I TQ+ + + + + Sbjct: 197 VTDASG-QPLI-SNPGDQGLGL-IRQGFLEISNVEPANELVDLIK-TQRNVELNSQVIQA 252 Query: 231 EKSMLEAIRNI 241 +L+ I N+ Sbjct: 253 SDQLLQLITNL 263 >gi|150388210|ref|YP_001318259.1| hypothetical protein Amet_0370 [Alkaliphilus metalliredigens QYMF] gi|149948072|gb|ABR46600.1| protein of unknown function DUF1078 domain protein [Alkaliphilus metalliredigens QYMF] Length = 264 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 44/247 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------------IKNDID 53 G+ AQ + + TVA+NM+N +T ++ + +F +++ A + + Sbjct: 10 GMKAQ---QLNIDTVANNMANVNTTAYKAQRTEFKDLLYANMKRTNLNNGQGSPVNLQVG 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT--- 109 + VA+ + + + G+ T LD A++G+ + A+E P G I TRDG K + Sbjct: 67 HGVMPVATSRMFTT---GNLEQTANPLDVAIDGEGFLAIEGPNGEIYYTRDGSLKFSVEM 123 Query: 110 DDGSLVSASGKYPVL---------DMASVPIQIPQKDEIFNVGEKGEISQKG-----KVI 155 D+ LV++ G Y VL D I I + I E G+I + K + Sbjct: 124 DEMRLVTSEG-YTVLSDFDFEIIFDEGMKNIAISEGGVITAENEFGDIEELDTIKLVKFL 182 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL SV + + +E IP S ++ +GFLE SN + EM +MI Sbjct: 183 NPQGLESVGRN---LYKETVASGEEIPMEGEGRTS--SILQGFLETSNVQIVDEMVKMIT 237 Query: 216 LTQKFNS 222 + + + Sbjct: 238 AQRAYET 244 >gi|116694221|ref|YP_728432.1| flagellar basal body rod protein FlgG [Ralstonia eutropha H16] gi|113528720|emb|CAJ95067.1| flagellar basal body rod protein [Ralstonia eutropha H16] Length = 261 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 44/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + ++ +++N++N T GF+ + F E++ GA+ +D S Sbjct: 11 GLDAQ---QTQMDVISNNLANVSTNGFKRGRAVFEELMYQTIRQPGALSSDQTTLPSGMQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ TG D A+ G +F + P G TRDG F+V +G Sbjct: 68 LGTGVRPVATERIHTQGNPQQTGNAKDVAILGQGFFQVALPDGTTAYTRDGSFQVDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATM---- 158 LV++SG V+ A I IP + G +S Q G++ +AT Sbjct: 128 LVTSSGF--VIQPA---ITIPANTLSMTIARDGTVSVTQPGSSANVQVGQLQLATFMNPA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 GL S+ + +V+ + SG P T + L+G V++ ++E SN N + E+ MI T Sbjct: 183 GLESMGENL-YVQTDASG----APNTTVPGLNGAGVVQQNYVEASNVNVVEELVSMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + ML+ + + Sbjct: 237 QRAYEINSKAVQASDQMLQRLSQL 260 >gi|88799023|ref|ZP_01114604.1| Flagellar basal body rod protein [Reinekea sp. MED297] gi|88778250|gb|EAR09444.1| Flagellar basal body rod protein [Reinekea sp. MED297] Length = 261 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 25/166 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------- 50 M + +G A + LST+++N++N T G++ + F +++ ++ Sbjct: 1 MHKALWVGKTGLEAQDIALSTISNNLANAATTGYKKERAVFEDLIYQVQRQPGAQSSQNT 60 Query: 51 ------DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRD 103 + + V + K+++ G T LD A+ G +F + P G I TRD Sbjct: 61 QLPSGLQLGTGVRTVGTQKQFVQ---GDLNMTEQPLDMAINGRGFFQVLMPDGNIAYTRD 117 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G F + +G++V+A+G + IQ+P++ + VG G ++ Sbjct: 118 GTFHLDAEGNVVTANGYF-----LEPNIQVPEQTKTITVGTDGIVT 158 >gi|262276417|ref|ZP_06054226.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] gi|262220225|gb|EEY71541.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] Length = 435 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 + NI L+ A ++ ++T ++N++N +T GF+ + +F +V A N S V + Sbjct: 2 ALNIALSGLAAAQKDMNTTSNNIANANTFGFKESRAEFGDVYSASIFSNAKTTTGSGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPR----GIILTRDGRFKVTDDGSLVSA 117 GS I T LD + G+ +F++ + + +LTR+G F + D ++V++ Sbjct: 62 SIVAQQFHEGSSIYTNNPLDLRISGNGYFSVANDKLATQDNVLTRNGAFHLDKDNNIVNS 121 Query: 118 SGKY 121 G++ Sbjct: 122 EGQF 125 >gi|257095359|ref|YP_003169000.1| hypothetical protein CAP2UW1_3821 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047883|gb|ACV37071.1| protein of unknown function DUF1078 domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 417 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 12/120 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 SF GL+ A L+ + +N++N TVGF+ F++V VGA + I + Sbjct: 2 SFQQGLSGLSAAATALNVIGNNVANASTVGFKGANAHFADVFASSLGIVGASQVGIGVGV 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S + ++ ++ G+ +T LD AL G +F + I TR+G+F + +G +++ Sbjct: 62 SSI---QQQFTQ--GNLTTTNNGLDLALNGGGFFRMSDDGAITYTRNGQFHIDKEGYVIN 116 >gi|229017058|ref|ZP_04173977.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1273] gi|229023239|ref|ZP_04179749.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1272] gi|228738033|gb|EEL88519.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1272] gi|228744231|gb|EEL94314.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1273] Length = 267 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 39/240 (16%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + G+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSTTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEG-----DAWFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ ++F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGTAGTTSFFVTSKNDETFLTRDGSFTINS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------------KGKVIATM 158 D L ++SG Y V+D+ + I+IP+ + F V GEI + K VIA + Sbjct: 123 DRYLQTSSGAY-VMDVNNERIRIPENVDFF-VSNNGEIYREVNDGTLQKPDIKRIVIAQL 180 Query: 159 GLYSVDMSQG--FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 +VD ++REN + + + DL T VK LE+SN + EM ++ Sbjct: 181 QTKTVDAEANARLMQRENKSFT--LAEGNIADLPNGTGAVKNHMLENSNVDMTKEMADLM 238 >gi|187926953|ref|YP_001893298.1| flagellar basal-body rod protein FlgF [Ralstonia pickettii 12J] gi|241665282|ref|YP_002983641.1| flagellar basal-body rod protein FlgF [Ralstonia pickettii 12D] gi|187728707|gb|ACD29871.1| flagellar basal-body rod protein FlgF [Ralstonia pickettii 12J] gi|240867309|gb|ACS64969.1| flagellar basal-body rod protein FlgF [Ralstonia pickettii 12D] Length = 245 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 38/231 (16%) Query: 31 TVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 T GF+ F V ++ D SFV + G +TG LD A++G +F Sbjct: 31 TTGFKAQIDAFHTV--GVQGDGSPTRSFVMASAIGTDVTPGPIETTGRALDVAIDGQGYF 88 Query: 91 ALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP-------QKDEIFNV 142 A+++P G TR G F++ DG++V+ SG+ PV+ PI +P KD N Sbjct: 89 AVQAPDGTEAYTRAGTFQLNPDGTIVTLSGQ-PVMGDGG-PITLPPNTTVQFAKDGTVNA 146 Query: 143 GEKGEISQKGKVIATMGLYSVDMSQ------GFVRR---ENSGISPNIPPTPLEDLSGVT 193 ++ + + L S+D S G R+ +++ ++ N+ TP Sbjct: 147 ISADNVTPP-VSLGRLKLVSIDPSNLDRGTDGLFRQRDGQDADVNENVRITP-------- 197 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKF----NSITTLIDENEKSMLEAIRN 240 G LE SN N + MI ++++ S+ T D N +S E +R+ Sbjct: 198 ---GALEGSNVNLTDSLVNMIEISRQLEMQMKSLQT-SDTNAQSANELLRH 244 >gi|238794000|ref|ZP_04637618.1| Flagellar basal-body rod protein flgG [Yersinia intermedia ATCC 29909] gi|238726632|gb|EEQ18168.1| Flagellar basal-body rod protein flgG [Yersinia intermedia ATCC 29909] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSKTDNTKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+ SG + V ++P +D I +V +G+ + Q G++ T G Sbjct: 125 NGQLVT-SGGFQVQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L S+ + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LESI--GENLYQETASSGAPN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLTQL 260 >gi|170288059|ref|YP_001738297.1| hypothetical protein TRQ2_0255 [Thermotoga sp. RQ2] gi|170175562|gb|ACB08614.1| protein of unknown function DUF1078 domain protein [Thermotoga sp. RQ2] Length = 750 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 28/159 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ + + V +N+SN +TVGF+ +V F ++ Q I Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLA-------QTIKAGR 53 Query: 61 SGKEY----------LSKEV---------GSFISTGTELDFALEGDAWFALESPRGIILT 101 S +E L +V GSF +TG + D A++GD +F + T Sbjct: 54 SSQENVGGTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGNAYYYT 113 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF 140 R G F + +G+L+ S Y V +V Q P+ E + Sbjct: 114 RAGAFTLDSNGNLIQTSTGYKVQGWTAV--QDPETGERY 150 >gi|90423017|ref|YP_531387.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB18] gi|90105031|gb|ABD87068.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB18] Length = 262 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 21/139 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------I 52 G+AAQ E + +++N++N T GF+ + F ++ VGA +D + Sbjct: 10 GMAAQ---ELNVQVISNNIANMRTTGFKKQRAAFQDLIYDHVRRVGAQASDQGTILPVGV 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 D G L + G+ +TG +LD A+ G+ +F ++ P G TRDG F + Sbjct: 67 DIGGGVKTVGTPRLMTQ-GTLSTTGNDLDLAVRGEGFFKIQMPDGTYSYTRDGSFTTDNT 125 Query: 112 GSLVSASGKYPVLDMASVP 130 G +V+++G P+ ++P Sbjct: 126 GRVVTSNGN-PLQPTITIP 143 >gi|315929129|gb|EFV08356.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 305] Length = 250 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 47/245 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---FVA 60 S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 3 SLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATTLSP 62 Query: 61 SGKEY--------LSKEV--GSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGRFKV 108 SG E ++K G+ ST T+ LD A+ G+ +F ++ P G I TR+G+F Sbjct: 63 SGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTK 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV---- 154 ++G++V++ G + +M IP+ NV G +S Q G+V Sbjct: 123 DNEGNIVNSDGYRLLPEMT-----IPEGATAINVATDGTVSVMLPGEQQETQIGQVELVQ 177 Query: 155 -IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYE 209 I GL+S+ +N + P+ ++G T++ GF+E SN + E Sbjct: 178 FINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEE 229 Query: 210 MGQMI 214 M +I Sbjct: 230 MTDLI 234 >gi|317133467|ref|YP_004092781.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] gi|315471446|gb|ADU28050.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] Length = 239 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 22/239 (9%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 +A R++ + +N+ N D+ GF++ F E + A++ + + +G E Sbjct: 13 IAQSDRINVMGNNLDNADSQGFKSDTATLRSFDEEL-ALRTTDAVPVGTLNAGVHVSGVE 71 Query: 70 V----GSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPVL 124 G TG+ + A+ G +FA+ +P G L TR+G F G L SG+ +L Sbjct: 72 TDLSQGELQQTGSSYNIAVNGGGFFAVAAPGGQTLYTREGDFAPDASGYLALPSGQR-LL 130 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 D PI F + G + T+ LY+ G + G T Sbjct: 131 DSTGAPISAAG----FRLAANGAYTNDAGQTGTVPLYT-----GTAAKRTDGF---FDLT 178 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + +G + +G++E SN N++ +M ++ ++ F S + ++ + + + S Sbjct: 179 GAQGATGSVLLQGYVEKSNVNTVTDMTGLMEASRAFQSCQQAYNTGTDTLDKLVTQVGS 237 >gi|22127327|ref|NP_670750.1| flagellar hook protein FlgE [Yersinia pestis KIM 10] gi|45442796|ref|NP_994335.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|108809055|ref|YP_652971.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|108810748|ref|YP_646515.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|145597817|ref|YP_001161893.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|150260249|ref|ZP_01916977.1| lateral flagellar hook protein [Yersinia pestis CA88-4125] gi|162421081|ref|YP_001604847.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165924960|ref|ZP_02220792.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939066|ref|ZP_02227618.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008888|ref|ZP_02229786.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211930|ref|ZP_02237965.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399572|ref|ZP_02305096.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419268|ref|ZP_02311021.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425161|ref|ZP_02316914.1| flagellar hook protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466340|ref|ZP_02331044.1| flagellar hook protein [Yersinia pestis FV-1] gi|218927912|ref|YP_002345787.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|229837408|ref|ZP_04457571.1| Flagellar hook protein flgE [Yersinia pestis Pestoides A] gi|229840621|ref|ZP_04460780.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842828|ref|ZP_04462980.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. India 195] gi|229900945|ref|ZP_04516069.1| Flagellar hook protein flgE [Yersinia pestis Nepal516] gi|270487673|ref|ZP_06204747.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294502788|ref|YP_003566850.1| flagellar hook protein [Yersinia pestis Z176003] gi|21960408|gb|AAM87001.1|AE013948_9 putative flagellar hook protein [Yersinia pestis KIM 10] gi|45437662|gb|AAS63212.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|108774396|gb|ABG16915.1| flagellar hook protein [Yersinia pestis Nepal516] gi|108780968|gb|ABG15026.1| putative flagellar hook protein [Yersinia pestis Antiqua] gi|115346523|emb|CAL19399.1| putative flagellar hook protein [Yersinia pestis CO92] gi|145209513|gb|ABP38920.1| flagellar hook protein [Yersinia pestis Pestoides F] gi|149289657|gb|EDM39734.1| lateral flagellar hook protein [Yersinia pestis CA88-4125] gi|162353896|gb|ABX87844.1| flagellar hook protein [Yersinia pestis Angola] gi|165913022|gb|EDR31647.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923160|gb|EDR40311.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992227|gb|EDR44528.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206676|gb|EDR51156.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963262|gb|EDR59283.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052076|gb|EDR63484.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055924|gb|EDR65705.1| flagellar hook protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682284|gb|EEO78376.1| Flagellar hook protein flgE [Yersinia pestis Nepal516] gi|229690095|gb|EEO82152.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. India 195] gi|229696987|gb|EEO87034.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705531|gb|EEO91541.1| Flagellar hook protein flgE [Yersinia pestis Pestoides A] gi|262360820|gb|ACY57541.1| flagellar hook protein [Yersinia pestis D106004] gi|270336177|gb|EFA46954.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294353247|gb|ADE63588.1| flagellar hook protein [Yersinia pestis Z176003] gi|320016711|gb|ADW00283.1| Flagellar hook protein flgE [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 413 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 12/161 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 SF+I A A ++L+T+++N++N+ T GF+ + +FS + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQ-----SQPLGVAVSGV 56 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG-- 119 + +SK+ G TG LD A+ G +F + ES TR G F+ DG LV+ G Sbjct: 57 SQNISKD-GQKEKTGMGLDLAISGGGFFVVRESSGDKAYTRAGMFRSDVDGYLVNGQGMK 115 Query: 120 --KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 YP ++ I +I N G + S++ +A + Sbjct: 116 LQGYPADAAGNIQAGIISDLKINNAGVPAKASEQLDFMANL 156 >gi|262364764|gb|ACY61321.1| flagellar hook protein [Yersinia pestis D182038] Length = 288 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 12/161 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 SF+I A A ++L+T+++N++N+ T GF+ + +FS + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQ-----SQPLGVAVSGV 56 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG-- 119 + +SK+ G TG LD A+ G +F + ES TR G F+ DG LV+ G Sbjct: 57 SQNISKD-GQKEKTGMGLDLAISGGGFFVVRESSGDKAYTRAGMFRSDVDGYLVNGQGMK 115 Query: 120 --KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 YP ++ I +I N G + S++ +A + Sbjct: 116 LQGYPADAAGNIQAGIISDLKINNAGVPAKASEQLDFMANL 156 >gi|291613040|ref|YP_003523197.1| flagellar basal-body rod protein FlgG [Sideroxydans lithotrophicus ES-1] gi|291583152|gb|ADE10810.1| flagellar basal-body rod protein FlgG [Sideroxydans lithotrophicus ES-1] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + ++ +++N++N T GF+ + F +++ GA + Q S Sbjct: 11 GLEAQ---QTQMDVISNNLANVSTNGFKRSRAVFEDLLYQNLRQPGAQSSQQTQIPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ T +LD A++G +F + P G TRDG F+ G Sbjct: 68 IGTGVRPVATERIHTQGNLQQTSNQLDVAIQGAGFFQVLMPDGTTAYTRDGSFQTDSQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKV----IATMGLYSV---- 163 +V+++G V+ A I IP +G+ G ++Q G + +M L + Sbjct: 128 IVTSNGF--VVQPA---ITIPANATTVTIGQDGVVTVTQPGATAPVQVGSMQLATFINPT 182 Query: 164 ---DMSQG-FVRRENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 M Q ++ +SG S N+P T + +G ++ +G++E SN N + E+ MI + Sbjct: 183 GLESMGQNMYLETASSGTPSTNVPGT---NGTG-SISQGYVETSNVNVVEELVNMIQTQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|304570583|ref|YP_388203.2| flagellar hook protein FlgE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 547 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 23/133 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + S G++ LA +R++ + +N++N +TVGF+ ++ F + I D++ A Sbjct: 3 LTASMWTGISGLLAHGERMNVLGNNIANVNTVGFKGARMDFEDF---ISQDVN-----TA 54 Query: 61 SGKEYLSKEVG-----------SFISTGTELDFALEGDAWFALESPRG---IILTRDGRF 106 SG + + VG SF +T D A+ G +FA+ SP+G TR G F Sbjct: 55 SGTRQVGRGVGIGTIYGDFSQGSFETTTEATDLAIGGRGFFAV-SPKGEETAYYTRAGNF 113 Query: 107 KVTDDGSLVSASG 119 + +G LV G Sbjct: 114 RFDKEGYLVDPHG 126 >gi|291523980|emb|CBK89567.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629] Length = 272 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 45/265 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A + + T+A+N+SN +T GF+ + +F K+ + Q I ++ +K VG+ Sbjct: 14 AEQTNVDTIANNLSNVNTTGFKGQRTEF-------KSLLYQTIQTRSTSGNGDAKPVGAQ 66 Query: 74 ISTGTEL-------------------DFALEGDAWFALE-SPRGIILTRDGRFKVTDDG- 112 + GT + DFALEGD +FA+ + TR+G F + G Sbjct: 67 VGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFTWSQYGN 126 Query: 113 --SLVSASGKYPVLDMASVPIQIPQ--KDEIFNVGEKGEI---SQKGKVI---ATMGLYS 162 ++++ S PV+D I +P E + GE G + + +G I + +Y Sbjct: 127 GQTILTDSQGNPVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLNQRIAVYQ 186 Query: 163 VDMSQGFVRRENSGISPNIPP-TPLEDLSGVTVKR-----GFLEDSNANSMYEMGQMIHL 216 + G ++ S ++ P+ + + +K G+LE SN EM +I + Sbjct: 187 FNNPSGLEKQSGSLLAATANSGNPMLEAANPALKSSKVVTGYLEGSNVQVADEMVNLI-V 245 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 Q+ + + SMLE N+ Sbjct: 246 AQRAYELNSKAITTADSMLETANNL 270 >gi|145298491|ref|YP_001141332.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] gi|142851263|gb|ABO89584.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] Length = 446 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 22/153 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +T+GF+ + +F++V N Q + VA+ Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTMGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVTDDGSLVS 116 G G+ T LD A++G+ +F G+ TR G FK+ ++ +V+ Sbjct: 62 GAVAHQFHQGALQFTNNALDLAIQGNGFFVTSD--GLTNLDRTYTRAGAFKLNENSYMVN 119 Query: 117 ASGKY-------------PVLDMASVPIQIPQK 136 G Y V A+ PIQ+P + Sbjct: 120 NQGHYLQGYEINTDGTPKAVSINATKPIQVPDR 152 >gi|120597305|ref|YP_961879.1| flagellar hook protein FlgE [Shewanella sp. W3-18-1] gi|120557398|gb|ABM23325.1| flagellar basal body FlaE domain protein [Shewanella sp. W3-18-1] Length = 395 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 18/142 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GFR + +F+ +I N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTNGFRGGRSEFA----SIYNGGQAGGVSVMSTT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFK------VTD------ 110 + SK GS TG +LD ++G+ +F L+ + G + R G F +TD Sbjct: 58 QNFSKG-GSLTYTGRQLDMGIQGEGFFVLKGTDGGAMYARAGMFHKDSQGFITDPVGSRL 116 Query: 111 DGSLVSASGKYPVLDMASVPIQ 132 G V+A+GK ++ + +Q Sbjct: 117 QGYSVNATGKIQQGNVGDLQVQ 138 >gi|126176156|ref|YP_001052305.1| flagellar hook protein FlgE [Shewanella baltica OS155] gi|304412508|ref|ZP_07394114.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|307307167|ref|ZP_07586905.1| fagellar hook-basal body protein [Shewanella baltica BA175] gi|125999361|gb|ABN63436.1| flagellar basal body FlaE domain protein [Shewanella baltica OS155] gi|304349150|gb|EFM13562.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|306910406|gb|EFN40837.1| fagellar hook-basal body protein [Shewanella baltica BA175] Length = 395 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 6/110 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GFR + +F+ +I N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTSGFRGGRSEFA----SIYNGGQAGGVGVMSTS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDG 112 + SK GS TG +LD ++G+ +F L+ + G + R G F +G Sbjct: 58 QNFSKG-GSLTYTGRQLDMGIQGEGFFVLKGNDGGAMYARAGMFHKDSEG 106 >gi|292487941|ref|YP_003530816.1| flagellar basal-body rod protein FlgG [Erwinia amylovora CFBP1430] gi|292899160|ref|YP_003538529.1| flagellar basal-body rod protein FlgG [Erwinia amylovora ATCC 49946] gi|291199008|emb|CBJ46119.1| flagellar basal-body rod protein FlgG (distal rod protein) [Erwinia amylovora ATCC 49946] gi|291553363|emb|CBA20408.1| Flagellar basal-body rod protein flgG [Erwinia amylovora CFBP1430] gi|312172062|emb|CBX80319.1| Flagellar basal-body rod protein flgG [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 34/259 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + + +A+N++N T GF+ + F +++ GA ++ S Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ T + D A+ G +F+++ P G TRDG F+ +G Sbjct: 68 IGTGTRPVATERLHNQGNLSQTDSSKDVAINGQGFFSVQMPDGTTAYTRDGSFQTDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEIS--QKGKVIATM-----GLYS 162 LV+ +G +PV +P +D + +V ++G+ + Q G++ + GL S Sbjct: 128 LVTNAG-FPVQPAIVIPANSLSMTVSRDGVVSVTQQGQANPVQVGQLTLSTFMNDAGLSS 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 M + + + PN P + +G T+ +G++E SN N E+ MI TQ+ Sbjct: 187 --MGENLYQETQASGVPN-ESNPGNNGAG-TLYQGYVETSNVNVAEELVSMIQ-TQRAYE 241 Query: 223 ITTLIDENEKSMLEAIRNI 241 I + ML + I Sbjct: 242 INSKAISTSDQMLAKLTQI 260 >gi|254421122|ref|ZP_05034846.1| flagellar basal-body rod protein FlgG [Brevundimonas sp. BAL3] gi|196187299|gb|EDX82275.1| flagellar basal-body rod protein FlgG [Brevundimonas sp. BAL3] Length = 262 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 19/138 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G+AAQ + + +++N++N +TVGF+ + +F +++ G + Sbjct: 10 GMAAQ---QLNVEVISNNIANMNTVGFKKQRAEFQDLLYQNVERMGAQSSSQGTVVPTGI 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 Q + V +G Y E G+ TG + D A++G +F + P G I TR G +V +G Sbjct: 67 QIGAGVKAGAVYRVTEQGTPAQTGNDYDMAIDGKGYFQITLPSGEIGYTRAGNLQVNQEG 126 Query: 113 SLVSASGKYPVLDMASVP 130 +V+ G Y + ++P Sbjct: 127 QIVTDDG-YALQPAVTIP 143 >gi|28869141|ref|NP_791760.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|28852381|gb|AAO55455.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] Length = 586 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 A+ + + + S ++G LD ++G+ +F + + TR G F Sbjct: 62 AATQQNF--NQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAF 107 >gi|146294550|ref|YP_001184974.1| flagellar hook protein FlgE [Shewanella putrefaciens CN-32] gi|145566240|gb|ABP77175.1| flagellar basal body FlaE domain protein [Shewanella putrefaciens CN-32] Length = 395 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 18/142 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GFR + +F+ +I N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTNGFRGGRSEFA----SIYNGGQAGGVSVMSTT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFK------VTD------ 110 + SK GS TG +LD ++G+ +F L+ + G + R G F +TD Sbjct: 58 QNFSKG-GSLTYTGRQLDMGIQGEGFFVLKGTDGGAMYARAGMFHKDSQGFITDPVGSRL 116 Query: 111 DGSLVSASGKYPVLDMASVPIQ 132 G V+A+GK ++ + +Q Sbjct: 117 QGYSVNATGKIQQGNVGDLQVQ 138 >gi|315125984|ref|YP_004067987.1| flagellar hook protein FlgE [Pseudoalteromonas sp. SM9913] gi|315014498|gb|ADT67836.1| flagellar hook protein FlgE [Pseudoalteromonas sp. SM9913] Length = 442 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 5/115 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FNIGL+ + + L ++N++N+ T G++ +F+ A+ N + VA+ KE Sbjct: 4 FNIGLSGLKSTQAGLEVTSNNIANSGTAGYKNNTAEFA----AVYNGSQRGGVKVANVKE 59 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G + TG LD A++G +FA+ T+ G+F++ +D ++V+A+G Sbjct: 60 DFVTG-GEIVRTGNALDIAIDGQGFFAISENGRTAYTQAGQFQLDNDLNVVNANG 113 >gi|260222470|emb|CBA32066.1| Flagellar basal-body rod protein flgG [Curvibacter putative symbiont of Hydra magnipapillata] Length = 260 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 43/256 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND---------IDQKIS 57 A + +L +++N++N T GF+ F ++ VG+ ++ + + Sbjct: 14 AQQMQLDVISNNLANVSTNGFKKSHAVFEDLMYQNLRQVGSNTSEQSTLPTGLQLGLGVR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ + + G+ + LD A++G+ +F + P G TRDG F++ + G LV+ Sbjct: 74 TVATSRSF---SQGNLQQSSNNLDVAIQGNGFFQVTMPDGTTGYTRDGAFQIDNAGRLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKV----IATMGLYSVDMSQG-- 168 ++G P+L+ I IP + + G ++ G V I T+ L S G Sbjct: 131 SNG-LPILN----GINIPANATSVAIAQDGAVTAMVPGNVAPQPIGTITLASFINPAGLE 185 Query: 169 ------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + SG PN L T+ +GF+E SN N + E+ MI TQ+ Sbjct: 186 PKGQNIYAESTASG-QPNAGTAGANGLG--TLAQGFVETSNVNVVQELVTMIQ-TQRAYE 241 Query: 223 ITTLIDENEKSMLEAI 238 + + + ML+ + Sbjct: 242 MNSKAIQTSDQMLQKL 257 >gi|254500847|ref|ZP_05112998.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] gi|222436918|gb|EEE43597.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] Length = 260 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 112/243 (46%), Gaps = 43/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 G+ AQ E + +++N++N T G++ + F +++ G +D Sbjct: 10 GMKAQ---EYNVEVISNNVANMRTTGYKKQRADFQDLLYQNLRRMGTETSDDGTIVPTGI 66 Query: 52 -IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 I + ++G+ +S+ GS +TG ELD A+ G+ +F ++ P G +RDG F+ Sbjct: 67 QIGTGVKLASTGR-VMSQ--GSMENTGKELDIAIRGEGFFQIQLPGGATGYSRDGSFERD 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 +G LV+ G LD I IP+ + G++ + AT+ L + +++ F Sbjct: 124 QNGQLVTIDGYQ--LD---PNITIPENTRDLTIAPSGKVQGVDEAGATVDLGQIQLAR-F 177 Query: 170 VRREN-SGISPNI---------PPT--PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 V + I N+ P T P ED G T ++ FLE +N +++ E+ +I Sbjct: 178 VNKAGLEAIGDNLFLETDASGAPQTGNPNEDGYGST-QQFFLEMANVDAVTEIADLISAQ 236 Query: 218 QKF 220 + + Sbjct: 237 RAY 239 >gi|213967581|ref|ZP_03395729.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|301385714|ref|ZP_07234132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato Max13] gi|302060074|ref|ZP_07251615.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato K40] gi|302134833|ref|ZP_07260823.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927882|gb|EEB61429.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] Length = 586 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 A+ + + + S ++G LD ++G+ +F + + TR G F Sbjct: 62 AATQQNF--NQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAF 107 >gi|332161323|ref|YP_004297900.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605243|emb|CBY26741.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. palearctica Y11] gi|325665553|gb|ADZ42197.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860605|emb|CBX70902.1| flagellar basal-body rod protein flgF [Yersinia enterocolitica W22703] Length = 251 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 23/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA+ +LE + T A+N++N T GFR+ V I + V + + Sbjct: 11 AARQSLELQAVT-ANNLANASTPGFRSQLAAMRAV--PIDGPSMATRTMVTASTPGVDIS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ +G LD AL+ D + A+ P G TR+G +++ DG + YP++ + Sbjct: 68 QGTMNYSGRPLDVALQQDGYLAVRLPDGTEAYTRNGNIQISADGQMTVQG--YPLMG-DN 124 Query: 129 VPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIP 182 PI++P + + + G IS IA +G + V + G V + G+ P Sbjct: 125 GPIEVPPQAAV-TIAADGTISALNAGDSPNTIAQLGQIKRVRATAGEVMHGDDGLFHLTP 183 Query: 183 PT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 T L + + + G LE SN ++ M MI + F + +DENE+ Sbjct: 184 ETQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMADMIANARGFEMQMKVIHSVDENEQ 242 >gi|315497625|ref|YP_004086429.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] gi|315415637|gb|ADU12278.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] Length = 472 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 10/129 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + S G+A A LS +++N++N+ T ++ ++ F +V A V Sbjct: 3 LSASMQAGVAGLAANSNALSAISNNIANSTTTAYKRVRTDFQSIVTASSTPTGYNAGGVI 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWF--------ALESPRGIILTRDGRFKVTDDG 112 S ++ +G+ ++LD ++G +F E R + TRDG F +DG Sbjct: 63 STTRHMISTLGTLQKASSQLDLGIDGQGFFITTQKSEPGAEDAR--LFTRDGSFFADEDG 120 Query: 113 SLVSASGKY 121 L +AS Y Sbjct: 121 YLRNASNLY 129 >gi|254488501|ref|ZP_05101706.1| flagellar hook protein FlgE [Roseobacter sp. GAI101] gi|214045370|gb|EEB86008.1| flagellar hook protein FlgE [Roseobacter sp. GAI101] Length = 432 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 24/156 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL++V+DN++N+ T G++ + F+ +V + + S+ A Sbjct: 3 ISSSLNAGVAGLQANATRLASVSDNIANSSTYGYKRVVTDFNSLVLS-----EGSSSYTA 57 Query: 61 SG----KEYLSKEVGSFISTGTELDFALEGDAWFAL----------ESPRGIILTRDGRF 106 G + L E G+ +ST D A+ G + + E+P ++LT G F Sbjct: 58 GGVRASSQRLLGEDGALVSTTNSTDLAVRGRGFLPVTTATEFNANSETPE-MMLTTTGSF 116 Query: 107 KVTDDGSLVSASG----KYPVLDMASVPIQIPQKDE 138 ++ +G L + SG +P S+PI D+ Sbjct: 117 RLDAEGFLKTESGLLLMGWPANADGSIPIYPRDTDD 152 >gi|23092315|gb|AAN08640.1| FlgE [Aeromonas hydrophila] Length = 453 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 22/153 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +++GF+ + +F++V N Q + VA+ Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNSIGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVTDDGSLVS 116 G G+ T LD A++G+ +F G+ TR G FK+ ++ +V+ Sbjct: 62 GAVAQQFHQGALQFTNNSLDLAIQGNGFFVTSD--GLTNLDRTYTRAGAFKLDENSYMVN 119 Query: 117 ASGKY-------------PVLDMASVPIQIPQK 136 G Y V A+ PIQIP K Sbjct: 120 NQGHYLQGYEVNVDGTPKAVSINATKPIQIPDK 152 >gi|255523680|ref|ZP_05390646.1| flagellar basal body rod protein [Clostridium carboxidivorans P7] gi|255512549|gb|EET88823.1| flagellar basal body rod protein [Clostridium carboxidivorans P7] Length = 259 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 34/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR--TIKVK---------FSEVVGAIK 49 M S ++ + E + + +N++N TVGF+ + VK + ++VG Sbjct: 1 MIRSLYTAVSGMITQEAKQDVITNNLANATTVGFKGDNLAVKKFDDVLLQNYDKIVGG-- 58 Query: 50 NDIDQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI----ILT 101 ++ I ++ G + + G+ ST DFA++G +FA++ G+ T Sbjct: 59 KNVRNVIGSISLGSKIDAVNTDFTQGNIESTDKATDFAIQGKGFFAVQRNNGVDNGQYYT 118 Query: 102 RDGRFKVTDDGSLVSASGKYPV---LDMASV-PIQIPQKDEIFNVGEKGEISQKGKVIAT 157 RDG F V +G LV+ SG + L S+ PI + + G +S + T Sbjct: 119 RDGHFHVNINGILVNDSGDTVLGRNLQNNSLGPINVGSGE--LKCDTSGNVSINN--VPT 174 Query: 158 MGLYSVDMSQ-GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 LY+VD + +++ + PT + V++ LE SN N + EM M+ Sbjct: 175 YKLYTVDFNDYNTLKKVGDNLYQGTNPTE----NAAVVRQKSLEKSNINVINEMVSMMTT 230 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIAS 243 + F + ++ ++++ +A I S Sbjct: 231 MRTFETNQKVVQALDETLSKAANEIGS 257 >gi|167568107|ref|ZP_02361023.1| flagellar hook protein FlgE [Burkholderia oklahomensis EO147] gi|167574225|ref|ZP_02367099.1| flagellar hook protein FlgE [Burkholderia oklahomensis C6786] Length = 413 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +TVGF+ +F++ V A+ N I + +AS Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFADMYANSVASAVNNPIGIG-TMLASV 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 ++ S+ G+ S+ + L+ A+ G+ +F + + + +RDG F+ +G +V++ G Sbjct: 65 QQQFSQ--GTITSSTSSLNVAINGNGFFQMSNNGVVTYSRDGTFQRDKNGYIVNSQGLNL 122 Query: 120 -KYP------VLDMASVPIQIPQKD 137 Y + A+VP+Q P + Sbjct: 123 MGYAADANGVINSAATVPLQAPTTN 147 >gi|114566479|ref|YP_753633.1| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337414|gb|ABI68262.1| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 261 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQ 54 M S + A + + T++ NM+N +TVGF+ +++F +++ A D ++ Sbjct: 1 MMRSLYTASSGMYAQQLNIDTLSHNMANVNTVGFKKQRLEFQDLLYQTIRRPAADEDRNE 60 Query: 55 KISFVASGKEYLSKEVGSFISTG----TE--LDFALEGDAWFALESPRG--IILTRDGRF 106 + + G + + +TG TE LD A+ G A+F ++ ++ TRDG F Sbjct: 61 PVGLLV-GLGVKPAAINTIFNTGNLQATENPLDVAINGTAFFGVKVAGNDELLYTRDGAF 119 Query: 107 KVTDDGSLVSASGKY----PVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIA 156 K+ +G LV+A G D + IQI +I + E ++ K I Sbjct: 120 KIDANGQLVTADGNLLEGAGTFDEGAYDIQIASDGKISYMIPGQETPEEAGQLKLFKFIN 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 GL + + + NSG + P + + V+++ G+LE SN + EM +I Sbjct: 180 PAGLQKIGKNL-YRATPNSGEAEEWQP---DSDNSVSLEAGYLEMSNVQIVEEMVNLIT- 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + + ML+ N+ Sbjct: 235 AQRAYEINSKVIISSDEMLQTAANL 259 >gi|261341493|ref|ZP_05969351.1| flagellar basal-body rod protein FlgF [Enterobacter cancerogenus ATCC 35316] gi|288316289|gb|EFC55227.1| flagellar basal-body rod protein FlgF [Enterobacter cancerogenus ATCC 35316] Length = 243 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 51/242 (21%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV------------ 70 A+N++N +T GFR +D+D +S G+ Y S+ + Sbjct: 23 ANNLANVNTQGFR--------------HDLDNALSQQIQGEGYASRFLVQQQQGGVDLTP 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ TG +LD A++G AL S + TR+G+ +V +G L PV + P Sbjct: 69 GATRDTGRDLDVAIKGSGLIALVSGNREVYTRNGQIQVGPEGDLTIDG--LPVAG-DNGP 125 Query: 131 IQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRRENSGI---SPNI 181 I +P I N+ + G IS G V A M + VD+ + ++ +G + N+ Sbjct: 126 IVLPPFSSI-NIADDGVISIVPDDGNVAAPMDVDRIKLVDIPASQLSKDAAGFMITNANV 184 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P E V + G LE SN +++ EM I L ++F E + M++A ++ Sbjct: 185 NPRTEE----VELVSGHLESSNVSAISEMVASIALNRQF--------EAQIKMMKAAEDL 232 Query: 242 AS 243 A+ Sbjct: 233 AT 234 >gi|152990359|ref|YP_001356081.1| flagellar basal-body rod protein FlgG [Nitratiruptor sp. SB155-2] gi|151422220|dbj|BAF69724.1| flagellar basal-body rod protein FlgG [Nitratiruptor sp. SB155-2] Length = 266 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 49/242 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISF--- 58 G+ AQ + L V++N++N +T GF+ + F +++ ++N ++ Sbjct: 11 GMQAQ---QTNLDVVSNNIANVNTTGFKQSRANFEDLIYQNIKDPGVENGNGNRLPTGIQ 67 Query: 59 ------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDD 111 VA + S+ GS T +LD A++G +F +E P G TR G F++ ++ Sbjct: 68 IGLGVRVADVAKIFSQ--GSLKHTERDLDVAIQGKGFFKIELPGGGEAYTRAGNFQIDNE 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT----MGLYSVDMSQ 167 G+LV+ G Y VL IQI + + + IS GKV+A +G + ++ Q Sbjct: 126 GNLVTDQG-YKVLP----NIQINAPETLVGI----SISPNGKVVAVRSEGVGQTTEELGQ 176 Query: 168 GFVRR-----------ENSGISPNIPPTPLE---DLSGV-TVKRGFLEDSNANSMYEMGQ 212 + R N + P+E D +G + +GFLE SN N + EM Sbjct: 177 LKLYRFINPAGLKAIGGNLFVQSEASAEPIEGDPDTNGFGKLSQGFLEMSNVNIVEEMVN 236 Query: 213 MI 214 +I Sbjct: 237 LI 238 >gi|269960117|ref|ZP_06174493.1| Flagellar basal-body rod protein flgF [Vibrio harveyi 1DA3] gi|269835088|gb|EEZ89171.1| Flagellar basal-body rod protein flgF [Vibrio harveyi 1DA3] Length = 243 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 31/213 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +V+ E+ GA D + + V + + G + TG L Sbjct: 23 SNNLSNADTAGFRADMERVRSVELQGA---GFDGR-TMVVTNSAATRFDSGDIMKTGRPL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ G+ + +E+P G TR G KV G++ S +G +PV+ + PI +P +I Sbjct: 79 DVAIMGEGYLTVETPIGNEAYTRAGNIKVDTFGAM-SING-FPVVG-ENGPIVVPDFQKI 135 Query: 140 FNVGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 EIS++G+V + T+ + ++Q +++E+ + ++ P Sbjct: 136 -------EISERGRVSVIPPGGGAEVEVGTLKMVKPPINQ--LQKESDSLLHSVDGVPFP 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + +E SN +++ E+ ++ LT+ F Sbjct: 187 ADETVQLSPEHIEGSNVSAIDELLSVMSLTRNF 219 >gi|170725955|ref|YP_001759981.1| flagellar hook protein FlgE [Shewanella woodyi ATCC 51908] gi|169811302|gb|ACA85886.1| flagellar basal body FlaE domain protein [Shewanella woodyi ATCC 51908] Length = 453 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 11/126 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L+T A+N++N +++GF+ + +F++V N I G Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANVNSIGFKESRAEFADV---YANSIFANSKTAVGGG 58 Query: 64 EYLSK-----EVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLV 115 S+ GS T LD A+ G +F S + TR G FKV + LV Sbjct: 59 ATTSQVAQQFHQGSLQFTNNALDMAINGGGFFVTSSSLDSQDHTFTRAGAFKVDSNNYLV 118 Query: 116 SASGKY 121 + G + Sbjct: 119 DSQGNF 124 >gi|126653740|ref|ZP_01725658.1| flagellar hook protein [Bacillus sp. B14905] gi|126589704|gb|EAZ83840.1| flagellar hook protein [Bacillus sp. B14905] Length = 329 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 28/169 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N +TVGF+ +V F +++ + + Sbjct: 8 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTVGFKKGRVLFKDLMSQTQAGASAATATRG 67 Query: 59 ------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG----------- 97 V G + + + GS STG LD A+EGD +F + G Sbjct: 68 GVNPQQVGLGTQLAAIDTIHGGGSLQSTGRGLDLAIEGDGFFMVADANGAPDPDSGFIDE 127 Query: 98 -----IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 + TR+G F + +G LV+A GKY V A I + D+ N Sbjct: 128 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGEDIVMEADDDGIN 176 >gi|28900122|ref|NP_799777.1| flagellar hook protein FlgE [Vibrio parahaemolyticus RIMD 2210633] gi|153837072|ref|ZP_01989739.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ3810] gi|260365772|ref|ZP_05778268.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|260880694|ref|ZP_05893049.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|260897700|ref|ZP_05906196.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|260899389|ref|ZP_05907784.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] gi|28808405|dbj|BAC61610.1| LfgE [Vibrio parahaemolyticus RIMD 2210633] gi|149749660|gb|EDM60405.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ3810] gi|308086228|gb|EFO35923.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|308092098|gb|EFO41793.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|308109176|gb|EFO46716.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] gi|308114990|gb|EFO52530.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|328470101|gb|EGF41012.1| flagellar hook protein FlgE [Vibrio parahaemolyticus 10329] Length = 398 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + K GS TG +D A+ G +F + G + TR G F TD + V+A+ Sbjct: 58 QNFDKN-GSITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFG-TDKSNFVTAN 111 >gi|89072315|ref|ZP_01158894.1| flagellar hook protein [Photobacterium sp. SKA34] gi|89051847|gb|EAR57299.1| flagellar hook protein [Photobacterium sp. SKA34] Length = 398 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A +L+T+++N++N T GF+ + +FS A+ N + VA+ Sbjct: 2 SFDIALSGLDATNIQLNTISNNIANVSTSGFKESRTEFS----AVYNGMQAGGVEVAAIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG LD A+ G +F + G + TR G F D ++VS +G Sbjct: 58 QNFDK-TGSITGTGRPLDLAISGSGFFVTKDLTGQTLYTRSGVFGSDKDNNIVSNNG 113 >gi|167770195|ref|ZP_02442248.1| hypothetical protein ANACOL_01538 [Anaerotruncus colihominis DSM 17241] gi|167667517|gb|EDS11647.1| hypothetical protein ANACOL_01538 [Anaerotruncus colihominis DSM 17241] Length = 273 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 36/173 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------- 45 M +F G++ +A +Q + V++N++N +TVG++ + FS+++ Sbjct: 1 MNIAFYNGVSGLVAYQQEMDLVSNNVANVNTVGYKPSRASFSDLLYTQMWTNTDALVNAG 60 Query: 46 --GAIKNDIDQK----------ISFVASGKEYLSKEV----GSFISTGTELDFALEGDAW 89 ++ D+ I G ++ G+ + T LD A++GD + Sbjct: 61 GDAGAQDTADENGVGGMTDADGIHMQGHGVRLAYSDLVFRQGNLLQTEHPLDMAIKGDGF 120 Query: 90 FALESPRGII-LTRDGRFKVTDDGS---LVSASGKYPVLDMASVPIQIPQKDE 138 FA+E G TR+G F ++ +G LV++ G Y VLD + I++ + D+ Sbjct: 121 FAVERANGTTEYTRNGAFDISIEGKSGYLVTSDGSY-VLDASGKRIKLDRGDD 172 >gi|124268252|ref|YP_001022256.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] gi|124261027|gb|ABM96021.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] Length = 260 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 37/256 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQ---------KIS 57 A + +L ++ N++N+ T G++ F +++ GA ++ Q Sbjct: 14 AQQTQLDHISHNLANSATNGYKRSHAVFEDLMYQTIRQPGANSSEQTQLPTGLQLGLGTR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 VA+ +++ GS + LD A++G +F ++ P G TRDG F+V+ G LV+ Sbjct: 74 AVATSRQF---SQGSLQQSTNPLDLAVKGQGFFQIQLPDGTTGYTRDGAFQVSAQGQLVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGF- 169 +G + I IP + +G G +S + + + L S G Sbjct: 131 NNGY-----VVQPGITIPANAQNVTIGADGNVSVTLPGQAAAQTVGQIQLASFVNPAGLE 185 Query: 170 VRREN---SGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R EN + P D +G+ + +GF+E SN N + E+ MI TQ+ + + Sbjct: 186 PRGENLYTETAASGTPNAGAPDSNGLGAIAQGFVEGSNVNVVEELVAMIQ-TQRAYELNS 244 Query: 226 LIDENEKSMLEAIRNI 241 + ML+ + + Sbjct: 245 KAIQTSDQMLQKLAQL 260 >gi|119503644|ref|ZP_01625727.1| flagellar hook protein [marine gamma proteobacterium HTCC2080] gi|119460706|gb|EAW41798.1| flagellar hook protein [marine gamma proteobacterium HTCC2080] Length = 410 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKISFVA 60 +F+ ++ A + L +++N++N TVGF+ + +F+E+ + ++ Q + Sbjct: 2 AFSTAISGIKAAQANLDVISNNIANASTVGFKASRAQFAEIYASSVSGGSNAGQGVELTE 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 E+ GS TG+ LD A+ G+ +F + + TR G F+V DG L + SG Sbjct: 62 IRAEF---SQGSLDFTGSGLDLAISGNGFFIVSNAGASEYTRAGSFQVDRDGFLTNESGN 118 >gi|23100412|ref|NP_693879.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831] gi|22778645|dbj|BAC14913.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831] Length = 269 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 47/269 (17%) Query: 10 AAQLALEQRLS-TVADNMSNTDTVGFR----TIKVKFSEVV--------------GAIKN 50 A+ + +QR ++++N++N +T G++ TI+ F E++ G + Sbjct: 9 ASGMITQQRQQESLSNNIANANTPGYKADQTTIRA-FPELLLQQTGSSSQIPTSQGGMNF 67 Query: 51 DIDQKISFVASGKEYLSKEVGSFIS-----TGTELDFAL--------EGDAWFALESPRG 97 I Q I + +G Y+ + V +F TG D A+ G +F++++ G Sbjct: 68 PISQTIGPINTGV-YVQETVPNFAQGDVQETGLSTDVAIIQGQVPDENGFLFFSVQNENG 126 Query: 98 I-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 LTR+G F V +G LV+ G Y VLD A PIQ D + V +G + Q Sbjct: 127 EERLTRNGNFTVDGEGFLVTNQGNY-VLDEAGNPIQTNGLDYV--VTPEGFV-QTADGTF 182 Query: 157 TMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 +G+ V+ S V+ N +G S ++P + ++++G LE SN N+M M M Sbjct: 183 PLGIRYVEDSNQLVKEGNDLFAGESIDVPAA-----ATFSLQQGALEQSNVNTMQTMTDM 237 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIA 242 ++ + F + ++ ++S+ + + I Sbjct: 238 MNAYRLFETNQRVLRAYDESLGKTVNEIG 266 >gi|331017025|gb|EGH97081.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 586 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 A+ + + + S ++G LD ++G+ +F + + TR G F Sbjct: 62 AATQQNF--NQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAF 107 >gi|330875984|gb|EGH10133.1| flagellar hook protein FlgE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 586 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 A+ + + + S ++G LD ++G+ +F + + TR G F Sbjct: 62 AATQQNF--NQGDSMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAF 107 >gi|114765244|ref|ZP_01444376.1| Flagellar basal body rod protein [Pelagibaca bermudensis HTCC2601] gi|114542379|gb|EAU45407.1| Flagellar basal body rod protein [Roseovarius sp. HTCC2601] Length = 261 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 69/131 (52%), Gaps = 19/131 (14%) Query: 7 IGLAA--QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND------ 51 +G+AA +A + + +++N++N +T GF++ + F++++ GA+ + Sbjct: 4 LGIAATGMMAQQTNVDVISNNIANANTTGFKSARASFTDLIYENQSREGAVTAEEGTTRP 63 Query: 52 --IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 +D + + G L+ + G T ++LD A++G +F + P G TRDG F++ Sbjct: 64 IGLDIGLGVRSVGTLRLNTQ-GGLTQTESQLDLAIDGRGYFTVNLPDGDQAYTRDGSFRL 122 Query: 109 TDDGSLVSASG 119 + +G +V+ G Sbjct: 123 SAEGQIVNHQG 133 >gi|258622488|ref|ZP_05717510.1| Flagellar hook protein flgE [Vibrio mimicus VM573] gi|262173354|ref|ZP_06041031.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] gi|258585188|gb|EEW09915.1| Flagellar hook protein flgE [Vibrio mimicus VM573] gi|261890712|gb|EEY36699.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] Length = 398 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A + L+T+++N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNKELNTISNNIANASTFGFKGSRTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + K GS TG +D A+ G +F + G ++ TR G F TD + ++ + Sbjct: 58 QNFDKN-GSITGTGRAMDMAINGSGFFVTKDSMGQLLYTRSGVFN-TDKNNFITGN 111 >gi|238758108|ref|ZP_04619288.1| Flagellar basal-body rod protein flgG [Yersinia aldovae ATCC 35236] gi|238703646|gb|EEP96183.1| Flagellar basal-body rod protein flgG [Yersinia aldovae ATCC 35236] Length = 260 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----G 159 +G LV+ SG + + ++P + +D I +V G+ + Q G++ T G Sbjct: 125 NGQLVT-SGGFQIQPAITIPANALKMTVGRDGIVSVTLPGQTATQQVGQLTLTTFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L SV + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LESV--GENLYQETASSGAPN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLTQL 260 >gi|153831599|ref|ZP_01984266.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01] gi|156976142|ref|YP_001447048.1| flagellar basal body rod protein [Vibrio harveyi ATCC BAA-1116] gi|148872109|gb|EDL70926.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01] gi|156527736|gb|ABU72821.1| hypothetical protein VIBHAR_04913 [Vibrio harveyi ATCC BAA-1116] Length = 243 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 31/213 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +V+ E+ GA D + + V + + G + TG L Sbjct: 23 SNNLSNADTAGFRADMERVRSVELQGA---GFDGR-TMVVTNSAATRFDSGDIMKTGRPL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ G+ + +E+P G TR G KV G++ S +G +PV+ + PI +P +I Sbjct: 79 DVAIMGEGYLTVETPIGNEAYTRAGNIKVDTFGAM-SING-FPVVG-ENGPIVVPDFQKI 135 Query: 140 FNVGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 EIS++G+V + T+ + ++Q +++E+ + ++ P Sbjct: 136 -------EISERGRVSVIPPGGGAEVEVGTLKMVKPAINQ--LQKESDSLLHSVDGVPFP 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + +E SN +++ E+ ++ LT+ F Sbjct: 187 ADETVQLSPEHIEGSNVSAIDELLSVMSLTRNF 219 >gi|1272368|gb|AAA97476.1| LfgE [Vibrio parahaemolyticus] Length = 362 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + K GS TG +D A+ G +F + G + TR G F TD + V+A+ Sbjct: 58 QNFDKN-GSITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFG-TDKSNFVTAN 111 >gi|330953721|gb|EGH53981.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 244 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKN-DIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + G N + ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ GS ++TGT LD A+ GD +F L + + TR G F +G +V Sbjct: 62 TAAVSQQF---SQGS-LTTGTANSLDLAINGDGFFMLSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SAS 118 ++S Sbjct: 118 NSS 120 >gi|258625234|ref|ZP_05720146.1| Flagellar hook protein flgE [Vibrio mimicus VM603] gi|258582481|gb|EEW07318.1| Flagellar hook protein flgE [Vibrio mimicus VM603] Length = 398 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A + L+T+++N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNKELNTISNNIANASTFGFKGSRTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + K GS TG +D A+ G +F + G ++ TR G F TD + ++ + Sbjct: 58 QNFDKN-GSITGTGRAMDMAINGSGFFVTKDSMGQLLYTRSGVFN-TDKNNFITGN 111 >gi|220932517|ref|YP_002509425.1| flagellar hook protein FlgE, epsilon proteobacterial [Halothermothrix orenii H 168] gi|219993827|gb|ACL70430.1| flagellar hook protein FlgE, epsilon proteobacterial [Halothermothrix orenii H 168] Length = 519 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIK 49 M S G++ A + R+ + +N++N +TVG+++ V F E++ G Sbjct: 1 MMRSMYAGVSGLKAHQTRMDVIGNNIANVNTVGYKSSSVTFKEMLSQTLRGAKAPQGGRG 60 Query: 50 NDIDQKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ V G + G+ TG D A++G+ +F + + + + TR GR + Sbjct: 61 GVNPMQVGLGVGVGSITVDHTQGNLQPTGVTTDLAIQGNGYFVVNNGQKNLFTRAGRLNL 120 Query: 109 TDDGSLVSASGKYPV 123 D+G LV+ S + + Sbjct: 121 DDNGYLVNVSNGFVI 135 >gi|148266214|ref|YP_001232920.1| hypothetical protein Gura_4204 [Geobacter uraniireducens Rf4] gi|146399714|gb|ABQ28347.1| protein of unknown function DUF1078 domain protein [Geobacter uraniireducens Rf4] Length = 294 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 20/139 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGKEYL 66 G++ L + ++ + +N+SN +T+GF+ + FS+++ A I ND S V G + Sbjct: 10 GVSGLLNNGEAMNVIGNNISNVNTIGFKYGRTLFSDMLSANIGND-----SQVGRGVQMQ 64 Query: 67 SKE----VGSFISTGTELDFALEGDAWFALESPR---------GIILTRDGRFKVTDDGS 113 E S+ +T D ++G+++FAL+ P +L+R G F V + Sbjct: 65 KVENIFGSSSYENTENVTDLGIQGNSFFALKPPTTAAPVAAQNAALLSRAGAFHVDKTLT 124 Query: 114 LVSASGKYPVLDMASVPIQ 132 +V+ G Y VLD A PIQ Sbjct: 125 MVNPDG-YQVLDTAGNPIQ 142 >gi|171059412|ref|YP_001791761.1| hypothetical protein Lcho_2731 [Leptothrix cholodnii SP-6] gi|170776857|gb|ACB34996.1| protein of unknown function DUF1078 domain protein [Leptothrix cholodnii SP-6] Length = 501 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F GL+ A + L + +N++N +T G + + +F+++ + N+I + Sbjct: 2 NFQQGLSGLNATSKNLEVIGNNVANANTYGTKASRAEFADMYASTINNIGTGNVGIGVQV 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 +S++ GS +T LD A+ G +F ++ G + TR+G+FK+ +G +V+ SG+ Sbjct: 62 AAVSQQFTQGSLSATDNPLDMAINGAGFFQVKDTAGNQLYTRNGQFKLDKEGFIVNNSGQ 121 Query: 121 ----YP------VLDMASVPIQIP 134 YP V+ A+ +Q+P Sbjct: 122 KLLGYPANADGVVVPGAAGALQLP 145 >gi|306813302|ref|ZP_07447495.1| flagellar basal body rod protein FlgF [Escherichia coli NC101] gi|305854065|gb|EFM54504.1| flagellar basal body rod protein FlgF [Escherichia coli NC101] Length = 245 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A+Q EQ++S A+N++N +T GFR + ND K+ Y+++E Sbjct: 12 ASQTLYEQQIS--ANNLANVNTNGFRAD-------MAMATND---KVKGGGFDTRYMAQE 59 Query: 70 VGSFI--STG----TE--LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + STG TE LD A++G + A++ G + TR+G + D G L + G Sbjct: 60 GVSGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMG---LYSVDMSQGFVRREN 174 + D PI +P + I + G G +S G V ATM L VD+ + + Sbjct: 119 LVLGDNG--PIILP-PNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNP 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G+ P + + V GFLE SN +++ EM I + ++F Sbjct: 176 EGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQF 221 >gi|15887919|ref|NP_353600.1| flagellar hook protein FlgE [Agrobacterium tumefaciens str. C58] gi|15155515|gb|AAK86385.1| flagellar hook protein [Agrobacterium tumefaciens str. C58] Length = 425 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A +L TV DN++N T G++ FS +V + V S Y Sbjct: 10 GVSGMNAQANKLGTVGDNIANASTTGYKRASTSFSSLV-LPSSSGSYASGGVQSNVRYSI 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 E G+ T + D A++G+ +F ++ G LTR G F+ +G L +A+G Sbjct: 69 SEQGNLSYTTSSTDLAIQGNGFFVVQDGSGTPYLTRAGSFQKNSEGYLENAAG 121 >gi|269138584|ref|YP_003295284.1| flagellar basal body rod protein [Edwardsiella tarda EIB202] gi|267984244|gb|ACY84073.1| flagellar basal body rod protein [Edwardsiella tarda EIB202] gi|304558594|gb|ADM41258.1| Flagellar basal-body rod protein FlgG [Edwardsiella tarda FL6-60] Length = 260 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 44/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +A+N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLEAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQTTLPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G E L + G+ T D A++G +F + P G TRDG F+V +G Sbjct: 68 LGTGVRPVATERLHSQ-GNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKV-----IATMGLY 161 LV+ASG + V ++P +D I +V +G+ + Q G++ I GL Sbjct: 127 QLVTASG-FQVTPAITIPANATSMTIGRDGIVSVTLQGQAAAQQVGQLTLSTFINDAGLE 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLT 217 SV + + E+SG P E G+ + +G++E SN N E+ MI T Sbjct: 186 SVGENL-YQETESSG-------APTESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + ML+ + + Sbjct: 237 QRAYEINSKAISTSDQMLQRLTQL 260 >gi|163738060|ref|ZP_02145476.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis BS107] gi|163742544|ref|ZP_02149930.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis 2.10] gi|161384129|gb|EDQ08512.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis 2.10] gi|161388676|gb|EDQ13029.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis BS107] Length = 261 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/248 (22%), Positives = 114/248 (45%), Gaps = 41/248 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIK------- 49 + I A + R+ T+++N++N +T G+ + +F+++ G + Sbjct: 3 ALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGTVL 62 Query: 50 -NDIDQKISFVASGKE-YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + AS +L++ G+ TG +LD A++G + + P G TRDG Sbjct: 63 PTGVQVGLGVRASAISIHLAQ--GALSQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G + V S I IP ++ GE+ + +G+++ + L Sbjct: 121 KRSAEGLVVTSDG-FTV----SPDITIPSDARNVSINADGEVYAYFDETAEGQLMGQLTL 175 Query: 161 YSVDMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 +G FV E SG + +P E+ G T+++G+LE S+ +++ E+ + Sbjct: 176 AGFANPKGLEALGSNLFVETEASGAA--TVASPGENGLG-TLRQGYLEASSVDAVREVTE 232 Query: 213 MIHLTQKF 220 +I + + Sbjct: 233 LIEAQRGY 240 >gi|119469951|ref|ZP_01612756.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Alteromonadales bacterium TW-7] gi|119446661|gb|EAW27934.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Alteromonadales bacterium TW-7] Length = 247 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 35/223 (15%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q L+ A+N++N +T GF K+D Q S A G+ S+ Sbjct: 17 QGLALKANNLANANTTGF--------------KSDFAQARSMQAFGEGLPSRVFSMQERP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPV 123 G + TG +LD A+ +AW +++ G T+ G +T +G L+++ G+ + Sbjct: 63 GSNMTSGGIVETGRDLDIAMSDNAWLSVQDASGNEAYTKVGTLNITAEGMLMTSHGRQVI 122 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-----SQGF-VRRENSGI 177 + P+ +P E E G I + + L VD + F + + N G+ Sbjct: 123 GEGG--PVILPVPIEKIEFSEDGAIQVRPQGAPATFLEEVDRLKVVEANSFQLEKGNDGL 180 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ + V V G LE SN N ++EM MI ++F Sbjct: 181 FRPKAGEVVDTSANVKVLSGTLEMSNVNPVHEMVDMISHQRQF 223 >gi|224825778|ref|ZP_03698882.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002] gi|224602002|gb|EEG08181.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002] Length = 241 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 7/113 (6%) Query: 23 ADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 A+N++N T GFR I+V S+ V D + + G+ + TG +LD Sbjct: 23 ANNLANAQTNGFRADIEVASSQAVRGYGYDARH---MTRAEPNAVDHRAGTVVETGRDLD 79 Query: 82 FALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 AL+GD + A+ G TR G F V +G+L + +G+ PVL PI +P Sbjct: 80 VALQGDGFLAVAVGSGEAYTRAGNFSVDANGAL-TVNGR-PVLGDGG-PIVLP 129 >gi|196247630|ref|ZP_03146332.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] gi|196212414|gb|EDY07171.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] Length = 264 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 48/273 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ A + +L + +N++N +T GF+ + F ++ + Q IS A Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFQDL-------MSQTISG-A 52 Query: 61 SGKEYLS-----KEVG---------------SFISTGTELDFALEGDAWFALESPRG--I 98 SG S ++VG S +TG LD A+ GD +F + G Sbjct: 53 SGPSAASGGTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDANGNNQ 112 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGK 153 + TR G F + +G +V+A+G Y + D P++I + ++G G + + + Sbjct: 113 MYTRAGNFYLDSEGYIVNANGLYLLGDGG--PLKIDSNAKSLSIGADGNVTIVDDTGNLQ 170 Query: 154 VIATMGLYSVDMSQGFVR------RE--NSGISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 ++ T+ L G + RE NSG P I P + +G V G LE SN + Sbjct: 171 LVGTIQLAKFANPDGLEKEGNNLFRETVNSG-DPQI-GVPGANGTGKLVS-GALEMSNVD 227 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E +MI + F + T +I +++ + E + Sbjct: 228 LAEEFTEMIVAQRGFQANTRIITTSDEILQELV 260 >gi|126668560|ref|ZP_01739514.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] gi|126626965|gb|EAZ97608.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] Length = 262 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 30/160 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GL+AQ + +ST+++N++N +T GF+ + F +++ +K Sbjct: 11 GLSAQ---DTNMSTISNNLANVNTTGFKRDRAVFQDLLYQVKRQPGGLNTQNTELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + + V + K++ G+ T LD A+ G + ++ P G TRDG+F++ Sbjct: 68 LGTGVRVVGTVKQFTQ---GNLQITEQPLDMAVNGRGFLQVQLPDGQTAYTRDGQFQLNS 124 Query: 111 DGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS 149 DG +V+ SG A P I IP+ +G G ++ Sbjct: 125 DGDVVNPSG------YALEPNINIPENATNVTIGRDGTVT 158 >gi|254516990|ref|ZP_05129048.1| flagellar basal-body rod protein FlgF [gamma proteobacterium NOR5-3] gi|219674495|gb|EED30863.1| flagellar basal-body rod protein FlgF [gamma proteobacterium NOR5-3] Length = 249 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 14/167 (8%) Query: 71 GSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG +LD A+ G WFA++S G +TR G F++ + G LV+ +G+ L Sbjct: 69 GVLNQTGRDLDLAINGQGWFAVQSLDGNGGEGVTRRGDFRIDELGQLVNGAGE--ALLGN 126 Query: 128 SVPIQIPQ-------KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PI +P D ++ GE+ V+ + L + ++ + E ++ N Sbjct: 127 DGPIALPPFSSLSIGSDGTVSIVPLGELPNAQAVLDRIKLVNPP-TENLTKGEYGLLTTN 185 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 P+E V + G LE SN N + M +MI L+++F L+ Sbjct: 186 -GGLPMEADGNVKMVSGALESSNVNPVTAMVRMIELSRQFEHYVKLM 231 >gi|111115607|ref|YP_710225.1| flagellar hook-basal body complex protein [Borrelia afzelii PKo] gi|216263707|ref|ZP_03435702.1| flagellar hook-basal body complex protein [Borrelia afzelii ACA-1] gi|110890881|gb|ABH02049.1| flagellar hook-basal body complex protein [Borrelia afzelii PKo] gi|215980551|gb|EEC21372.1| flagellar hook-basal body complex protein [Borrelia afzelii ACA-1] Length = 282 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L V++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PIVGKLGTGVEENEIYTLFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|149189836|ref|ZP_01868116.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148836322|gb|EDL53279.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 398 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A +L+T++ N++N T GF+ + +FS A+ N + VAS Sbjct: 2 SFDIALSGLDATNTQLNTISHNIANASTYGFKEARTEFS----AVYNGMQAGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G+ +F + G + TR G F D +V +G Sbjct: 58 QNFDKN-GSVSGTGRAMDLAINGNGFFVTKDHMGQTLYTRAGVFGTDKDNYVVGNTG 113 >gi|300722682|ref|YP_003711972.1| flagellar hook protein [Xenorhabdus nematophila ATCC 19061] gi|139522504|gb|ABO77656.1| FlgE [Xenorhabdus nematophila] gi|297629189|emb|CBJ89785.1| flagellar biosynthesis; hook protein [Xenorhabdus nematophila ATCC 19061] Length = 398 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 18/143 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-FVASG 62 SF+ ++ A L + +N+SN+ T GF++ F++V + + K+S V + Sbjct: 2 SFSQAVSGLNAAASNLDVIGNNISNSATFGFKSSSAAFADVFSGSEVGLGVKVSGMVQNF 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG-- 119 K+ GS +T +LD A+ +F ++ G I+ +R+G+FK+ +D +L++ G Sbjct: 62 KD------GSTTTTNRKLDMAINQGGFFRMQDSNGNILYSRNGQFKMDEDRNLINMQGMK 115 Query: 120 --KYPVLD------MASVPIQIP 134 YP ++ A PI IP Sbjct: 116 LTGYPAVNGEIQIGGAVGPISIP 138 >gi|300312833|ref|YP_003776925.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] gi|300075618|gb|ADJ65017.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 13/128 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ + L + +N++N TVGF+ +V+F++ N + Sbjct: 2 SFQQGLSGLHGASKHLDVIGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVTV 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFAL------ESPRGIILTRDGRFKVTDDGSLV 115 +S+ G+ +T LD A+ GD +F + +SPR R+G+F++ DG L+ Sbjct: 62 ANVSQAFTQGNIATTNNALDVAINGDGFFRMAASLTDQSPR---YGRNGQFQLNKDGYLI 118 Query: 116 SAS--GKY 121 + S G Y Sbjct: 119 NPSMNGAY 126 >gi|167463161|ref|ZP_02328250.1| flagellar hook-basal body protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 275 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/250 (21%), Positives = 108/250 (43%), Gaps = 53/250 (21%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK---------- 63 L+Q+L +A+N++N +TVG++ F E++ ++KN Q F G+ Sbjct: 14 GLQQKLDILANNIANINTVGYKRKDASFQEILKSVKN---QPEKFQLPGRMTPSGLQLGW 70 Query: 64 -EYLSKEVGSFI-----STGTELDFALEGDAWFALESPRGIILTRDGRFKV--------- 108 LS+ F +T LD ++GD F + T+ G F++ Sbjct: 71 GARLSQISSDFTQGPVENTQNSLDLMVQGDGMFEILVDGKPYWTKSGSFQLSVMPGNQGL 130 Query: 109 ---TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----------QKGKV 154 T DG VS P++ + +I ++ + E G ++ ++ Sbjct: 131 ALTTKDGHYVSGLNGEPIILPPNTQPKIDEQGNVVAYSETGARPVQVGRIRVVQIERPQL 190 Query: 155 IATMG--LYSVD--MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + +G LY++ + +G R+ +G++ +++ + V +G+LE SN N EM Sbjct: 191 LEAVGENLYTLKAGIEKGQALRDAAGLT-------VQEQGKLKVMQGYLEQSNVNLSDEM 243 Query: 211 GQMIHLTQKF 220 ++I++ + F Sbjct: 244 TELINVQRAF 253 >gi|153948570|ref|YP_001399634.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|152960065|gb|ABS47526.1| flagellar hook protein flgE [Yersinia pseudotuberculosis IP 31758] Length = 402 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 10/145 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A A ++L+T+++N++N+ T GF+ + +F+ + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFASMYAQ-----SQPLGVTVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + G TG LD A+ G +F + G TR G F+ DG LV+ G Sbjct: 57 SQNIGKDGQKDKTGMGLDLAISGGGFFVVRENSGDKAYTRAGMFRSDVDGYLVNGQGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YP D ++ I +I N G Sbjct: 117 QGYPADDAGNIQAGIISDLKINNAG 141 >gi|330961196|gb|EGH61456.1| flagellar hook protein FlgE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 442 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 SFNIGL+ A + L +N++N T GF++ + +F++ K S V SG Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRTEFADQYAQSIRGTSGKSS-VGSGV 60 Query: 63 -KEYLSKEV--GSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 +S++ GS ++TGT LD A+ GD +F L + + TR G F +G +V++ Sbjct: 61 MTAAVSQQFSQGS-LTTGTANSLDLAINGDGFFMLSNNGEKLYTRAGAFHTDKEGFVVNS 119 Query: 118 SG 119 +G Sbjct: 120 TG 121 >gi|322383079|ref|ZP_08056906.1| flagellar hook-basal body-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152741|gb|EFX45367.1| flagellar hook-basal body-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 271 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/250 (21%), Positives = 108/250 (43%), Gaps = 53/250 (21%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK---------- 63 L+Q+L +A+N++N +TVG++ F E++ ++KN Q F G+ Sbjct: 10 GLQQKLDILANNIANINTVGYKRKDASFQEILKSVKN---QPEKFQLPGRMTPSGLQLGW 66 Query: 64 -EYLSKEVGSFI-----STGTELDFALEGDAWFALESPRGIILTRDGRFKV--------- 108 LS+ F +T LD ++GD F + T+ G F++ Sbjct: 67 GARLSQISSDFTQGPVENTQNSLDLMVQGDGMFEILVDGKPYWTKSGSFQLSVMPGNQGL 126 Query: 109 ---TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----------QKGKV 154 T DG VS P++ + +I ++ + E G ++ ++ Sbjct: 127 ALTTKDGHYVSGLNGEPIILPPNTQPKIDEQGNVVAYSETGARPVQVGRIRVVQIERPQL 186 Query: 155 IATMG--LYSVD--MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + +G LY++ + +G R+ +G++ +++ + V +G+LE SN N EM Sbjct: 187 LEAVGENLYTLKAGIEKGQALRDAAGLT-------VQEQGKLKVMQGYLEQSNVNLSDEM 239 Query: 211 GQMIHLTQKF 220 ++I++ + F Sbjct: 240 TELINVQRAF 249 >gi|260597447|ref|YP_003210018.1| flagellar basal body rod protein FlgG [Cronobacter turicensis z3032] gi|260216624|emb|CBA29921.1| Flagellar basal-body rod protein flgG [Cronobacter turicensis z3032] Length = 260 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 116/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIATM-----GL 160 +G LV+A G P + + + + I +D + +V ++G + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITVGRDGVVSVTQQGTAAPVQVGQINLTTFMNDSGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-TPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|157371206|ref|YP_001479195.1| flagellar basal body rod protein FlgF [Serratia proteamaculans 568] gi|157322970|gb|ABV42067.1| flagellar basal-body rod protein FlgF [Serratia proteamaculans 568] Length = 251 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 33/244 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA+ LEQ+ S A+N++N T GFR V + + + + ++ +S+ Sbjct: 11 AARQTLEQQ-SVTANNLANASTPGFRAQLSALRAVPVDGPSLLTRTLVTASTPGADMSQ- 68 Query: 70 VGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ T LD AL+ D + A+ P G TR+G +++ G L + G+ PV+ Sbjct: 69 -GALNYTARPLDVALQQDGFLAVSLPDGGEAYTRNGNLQISSTGQL-TVQGR-PVMGDGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSG---ISP 179 PI++P EI + G IS +A +G L V V R + G ++P Sbjct: 126 -PIEVPPSAEI-TIAADGTISALNAGDPPNTLAQIGRLKLVKADAREVTRGDDGLFRLTP 183 Query: 180 --------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLID 228 +P PL V V G LE SN M M MI ++F + +D Sbjct: 184 ETQQQRGNQLPNDPL-----VRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVD 238 Query: 229 ENEK 232 ENE+ Sbjct: 239 ENEQ 242 >gi|158422258|ref|YP_001523550.1| flagellar basal body rod protein FlgG [Azorhizobium caulinodans ORS 571] gi|158329147|dbj|BAF86632.1| flagellar basal-body rod FlgG protein [Azorhizobium caulinodans ORS 571] Length = 262 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 36/256 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVAS----- 61 A + + +A+N++N +T GF+ + +FS+++ G D Q I A Sbjct: 13 AQQTNVEVIANNIANINTTGFKRARAEFSDLLYQSERTQGIPNRDGGQAIPEGAMLGLGV 72 Query: 62 ---GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 G L + G TG LD A+ G F + +P G + TR G F + G LV++ Sbjct: 73 RTVGIRNLHTQ-GPLTQTGNTLDLAVNGRGMFEITTPDGQTVYTRAGSFNRSATGQLVTS 131 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVR 171 G V++ A IQ P V E G++ +++ + L + G Sbjct: 132 DGY--VINPA---IQFPNNATEIQVNESGQVYATIPNQTNPQLLGQLTLVNFANESGMEP 186 Query: 172 RENSGISPNIPP-TPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 N+ + P+ ++G +++G+LE SN + + E+ ++I + + + + Sbjct: 187 LGNNLYRETLASGQPIVGVAGDVGFGKIQQGYLEASNVDPVKEITELIAAQRSYEMNSKV 246 Query: 227 I---DENEKSMLEAIR 239 I DE K++ IR Sbjct: 247 IQAADEMSKTVSTGIR 262 >gi|148269402|ref|YP_001243862.1| hypothetical protein Tpet_0257 [Thermotoga petrophila RKU-1] gi|147734946|gb|ABQ46286.1| protein of unknown function DUF1078 domain protein [Thermotoga petrophila RKU-1] Length = 623 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 18/154 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--------------SEVVG 46 M S G+ + + V +N+SN +TVGF+ +V F E VG Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRSPQENVG 60 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 S V+S + +++ GSF +TG + D A++GD +F + TR G F Sbjct: 61 GTNPMQIGLGSQVSSIDKIMTQ--GSFQNTGVKTDLAIQGDGFFIVSDGSSYYYTRAGAF 118 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF 140 + +G+L+ S Y V +V Q P+ E + Sbjct: 119 TLDSNGNLIQTSTGYKVQGWTAV--QDPETGERY 150 >gi|82544456|ref|YP_408403.1| flagellar basal body rod protein FlgG [Shigella boydii Sb227] gi|81245867|gb|ABB66575.1| cell-distal portion of basal-body rod [Shigella boydii Sb227] gi|320186975|gb|EFW61688.1| Flagellar basal-body rod protein FlgG [Shigella flexneri CDC 796-83] gi|332094081|gb|EGI99133.1| flagellar basal-body rod protein FlgG [Shigella boydii 3594-74] Length = 260 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|78485811|ref|YP_391736.1| hypothetical protein Tcr_1470 [Thiomicrospira crunogena XCL-2] gi|78364097|gb|ABB42062.1| Flagellar basal-body rod protein FlgF [Thiomicrospira crunogena XCL-2] Length = 245 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 27/165 (16%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ TG +LD + + + A+++P G LTR + +G L+ G PVL+ Sbjct: 69 GAVKVTGRDLDIMTKENGFLAIQAPDGSEALTRSASMHLNPEGDLLDVHGN-PVLNEGGA 127 Query: 130 PIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQ------GFVRRENS 175 PI IP I +G G IS V+ + L D+ Q G++R N+ Sbjct: 128 PINIPPAKSI-QIGSDGTISFIPADSTNNLAVVLDQVRLVQPDIKQLEKGLDGYIR--NN 184 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G P + V G LE SN N++ + MI L++K+ Sbjct: 185 GAELEQAP--------IRVVSGALESSNVNTVEALTNMIELSRKY 221 >gi|83589631|ref|YP_429640.1| hypothetical protein Moth_0779 [Moorella thermoacetica ATCC 39073] gi|83572545|gb|ABC19097.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 275 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 107/276 (38%), Gaps = 38/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDID- 53 M S G++ + R+ + DN++N +TVGF+ V F +V G+ + Sbjct: 1 MMRSLYSGVSGLRTHQTRMDVIGDNIANVNTVGFKRSAVTFKDVFYQTLRGGSAGDSGGT 60 Query: 54 -------QKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 Q+I V G + G+ STG D ++GD +F + TR G Sbjct: 61 GMGGTNPQQIGLGVTLGSIDVVHTQGAAASTGNGTDLMIQGDGFFRVSDGTNTYYTRAGA 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQI---------PQKDEIFNVGEKGEISQKGKVIA 156 F ++G LV+ G VL PIQI PQ I +G + G + Sbjct: 121 FHFDNEGFLVTTDG-LKVLGTDDNPIQIADMNDPTTMPQSYSIDKMGVVHYVDSTGAALQ 179 Query: 157 TMGLYSV----------DMSQGFVRRENSGISPNIPPTPLE-DLSGVTVKRGFLEDSNAN 205 G S+ + Q R S P TP + L+ T+ LE SN + Sbjct: 180 A-GTISIAKFSNPSGLEKIGQNLYRATTSSGDPGSELTPGQGSLANTTIIPSALEMSNVD 238 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E MI + F + I +++ ML+ + N+ Sbjct: 239 LAQEFTDMIITERGFQANARTITTSDQ-MLQELVNL 273 >gi|170694392|ref|ZP_02885546.1| protein of unknown function DUF1078 domain protein [Burkholderia graminis C4D1M] gi|170140815|gb|EDT08989.1| protein of unknown function DUF1078 domain protein [Burkholderia graminis C4D1M] Length = 502 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 22/136 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKND--IDQKISFVASGKEYLSKEVG 71 L + +N++N +TVGF++ +F++ V A+ N I K+S V ++ S+ G Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLSEV---QQQFSQ--G 71 Query: 72 SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------KYP 122 + ST LD A+ G+ +F L + ++ +R+G F++ +G + +A G Sbjct: 72 TITSTNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSTG 131 Query: 123 VLDMA-SVPIQIPQKD 137 V++ A +VP+ +P + Sbjct: 132 VINTAQTVPLSVPTAN 147 >gi|15801195|ref|NP_287212.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 EDL933] gi|15830710|ref|NP_309483.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. Sakai] gi|16129041|ref|NP_415596.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|26247218|ref|NP_753258.1| flagellar basal body rod protein FlgG [Escherichia coli CFT073] gi|89107924|ref|AP_001704.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. W3110] gi|91210230|ref|YP_540216.1| flagellar basal body rod protein FlgG [Escherichia coli UTI89] gi|110641254|ref|YP_668984.1| flagellar basal body rod protein FlgG [Escherichia coli 536] gi|110805095|ref|YP_688615.1| flagellar basal body rod protein FlgG [Shigella flexneri 5 str. 8401] gi|117623264|ref|YP_852177.1| flagellar basal body rod protein FlgG [Escherichia coli APEC O1] gi|157156521|ref|YP_001462312.1| flagellar basal body rod protein FlgG [Escherichia coli E24377A] gi|168747146|ref|ZP_02772168.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4113] gi|168758629|ref|ZP_02783636.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4401] gi|168764490|ref|ZP_02789497.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4501] gi|168767737|ref|ZP_02792744.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4486] gi|168773923|ref|ZP_02798930.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4196] gi|168783608|ref|ZP_02808615.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4076] gi|168790013|ref|ZP_02815020.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC869] gi|168802023|ref|ZP_02827030.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC508] gi|170080729|ref|YP_001730049.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|170679890|ref|YP_001744102.1| flagellar basal body rod protein FlgG [Escherichia coli SMS-3-5] gi|188492805|ref|ZP_03000075.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|191168453|ref|ZP_03030241.1| flagellar basal-body rod protein FlgG [Escherichia coli B7A] gi|191172450|ref|ZP_03033991.1| flagellar basal-body rod protein FlgG [Escherichia coli F11] gi|193064556|ref|ZP_03045636.1| flagellar basal-body rod protein FlgG [Escherichia coli E22] gi|193069501|ref|ZP_03050455.1| flagellar basal-body rod protein FlgG [Escherichia coli E110019] gi|194438123|ref|ZP_03070216.1| flagellar basal-body rod protein FlgG [Escherichia coli 101-1] gi|195935468|ref|ZP_03080850.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. EC4024] gi|208806632|ref|ZP_03248969.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4206] gi|208815071|ref|ZP_03256250.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4045] gi|208822750|ref|ZP_03263069.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4042] gi|209399139|ref|YP_002269924.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4115] gi|209918332|ref|YP_002292416.1| flagellar basal body rod protein FlgG [Escherichia coli SE11] gi|215486287|ref|YP_002328718.1| flagellar basal body rod protein FlgG [Escherichia coli O127:H6 str. E2348/69] gi|217328263|ref|ZP_03444345.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. TW14588] gi|218553656|ref|YP_002386569.1| flagellar basal body rod protein FlgG [Escherichia coli IAI1] gi|218557960|ref|YP_002390873.1| flagellar basal body rod protein FlgG [Escherichia coli S88] gi|218694612|ref|YP_002402279.1| flagellar basal body rod protein FlgG [Escherichia coli 55989] gi|218700419|ref|YP_002408048.1| flagellar basal body rod protein FlgG [Escherichia coli IAI39] gi|218704486|ref|YP_002412005.1| flagellar basal body rod protein FlgG [Escherichia coli UMN026] gi|227886564|ref|ZP_04004369.1| flagellar basal body rod protein FlgG [Escherichia coli 83972] gi|237706936|ref|ZP_04537417.1| flagellar basal-body rod protein flgG [Escherichia sp. 3_2_53FAA] gi|238900332|ref|YP_002926128.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BW2952] gi|253773898|ref|YP_003036729.1| flagellar basal body rod protein FlgG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161184|ref|YP_003044292.1| flagellar basal body rod protein FlgG [Escherichia coli B str. REL606] gi|254792460|ref|YP_003077297.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. TW14359] gi|256018665|ref|ZP_05432530.1| flagellar basal body rod protein FlgG [Shigella sp. D9] gi|256023224|ref|ZP_05437089.1| flagellar basal body rod protein FlgG [Escherichia sp. 4_1_40B] gi|260843318|ref|YP_003221096.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|260854561|ref|YP_003228452.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|260867441|ref|YP_003233843.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|261227017|ref|ZP_05941298.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK2000] gi|261256251|ref|ZP_05948784.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK966] gi|291282098|ref|YP_003498916.1| Flagellar basal-body rod protein flgG [Escherichia coli O55:H7 str. CB9615] gi|293404362|ref|ZP_06648356.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1412] gi|293409444|ref|ZP_06653020.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|293433368|ref|ZP_06661796.1| flagellar basal-body rod protein FlgG [Escherichia coli B088] gi|297516691|ref|ZP_06935077.1| flagellar basal body rod protein FlgG [Escherichia coli OP50] gi|298380142|ref|ZP_06989747.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1302] gi|300816780|ref|ZP_07097000.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300821141|ref|ZP_07101290.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 119-7] gi|300899597|ref|ZP_07117836.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300902469|ref|ZP_07120451.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 84-1] gi|300918680|ref|ZP_07135261.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 115-1] gi|300922604|ref|ZP_07138704.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 182-1] gi|300928370|ref|ZP_07143904.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 187-1] gi|300938643|ref|ZP_07153372.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|300950173|ref|ZP_07164118.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 116-1] gi|300954382|ref|ZP_07166836.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 175-1] gi|300974382|ref|ZP_07172594.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 45-1] gi|300982619|ref|ZP_07176203.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 200-1] gi|301023265|ref|ZP_07187062.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 69-1] gi|301029707|ref|ZP_07192761.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 196-1] gi|301051138|ref|ZP_07197968.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 185-1] gi|301304983|ref|ZP_07211085.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 124-1] gi|301328552|ref|ZP_07221613.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 78-1] gi|301644990|ref|ZP_07244956.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|306814073|ref|ZP_07448246.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|307137713|ref|ZP_07497069.1| flagellar basal body rod protein FlgG [Escherichia coli H736] gi|307310144|ref|ZP_07589794.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|309798072|ref|ZP_07692447.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 145-7] gi|312968848|ref|ZP_07783055.1| flagellar basal-body rod protein FlgG [Escherichia coli 2362-75] gi|331641622|ref|ZP_08342757.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331646336|ref|ZP_08347439.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|331657140|ref|ZP_08358102.1| flagellar basal-body rod protein FlgG [Escherichia coli TA206] gi|331662484|ref|ZP_08363407.1| flagellar basal-body rod protein FlgG [Escherichia coli TA143] gi|331667478|ref|ZP_08368342.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331672598|ref|ZP_08373387.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|331676869|ref|ZP_08377565.1| flagellar basal-body rod protein FlgG [Escherichia coli H591] gi|331682580|ref|ZP_08383199.1| flagellar basal-body rod protein FlgG [Escherichia coli H299] gi|332279734|ref|ZP_08392147.1| flagellar basal-body rod protein FlgG [Shigella sp. D9] gi|78100014|sp|P0ABX7|FLGG_ECO57 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|78100015|sp|P0ABX6|FLGG_ECOL6 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|78100016|sp|P0ABX5|FLGG_ECOLI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|12514619|gb|AAG55824.1|AE005318_1 flagellar biosynthesis, cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. EDL933] gi|26107619|gb|AAN79818.1|AE016759_92 Flagellar basal-body rod protein flgG [Escherichia coli CFT073] gi|1787318|gb|AAC74162.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|4062656|dbj|BAA35887.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K12 substr. W3110] gi|13360920|dbj|BAB34879.1| flagellar basal body rod protein flgG [Escherichia coli O157:H7 str. Sakai] gi|91071804|gb|ABE06685.1| flagellar basal body rod protein FlgG [Escherichia coli UTI89] gi|110342846|gb|ABG69083.1| flagellar basal-body rod protein FlgG [Escherichia coli 536] gi|110614643|gb|ABF03310.1| flagellar basal-body rod protein FlgG [Shigella flexneri 5 str. 8401] gi|115512388|gb|ABJ00463.1| flagellar basal-body rod protein FlgG [Escherichia coli APEC O1] gi|157078551|gb|ABV18259.1| flagellar basal-body rod protein FlgG [Escherichia coli E24377A] gi|169888564|gb|ACB02271.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|170517608|gb|ACB15786.1| flagellar basal-body rod protein FlgG [Escherichia coli SMS-3-5] gi|187770380|gb|EDU34224.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4196] gi|188018193|gb|EDU56315.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4113] gi|188488004|gb|EDU63107.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|188999095|gb|EDU68081.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4076] gi|189354587|gb|EDU73006.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4401] gi|189363057|gb|EDU81476.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4486] gi|189365523|gb|EDU83939.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4501] gi|189370495|gb|EDU88911.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC869] gi|189375944|gb|EDU94360.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC508] gi|190901472|gb|EDV61233.1| flagellar basal-body rod protein FlgG [Escherichia coli B7A] gi|190907334|gb|EDV66932.1| flagellar basal-body rod protein FlgG [Escherichia coli F11] gi|192927808|gb|EDV82422.1| flagellar basal-body rod protein FlgG [Escherichia coli E22] gi|192957249|gb|EDV87698.1| flagellar basal-body rod protein FlgG [Escherichia coli E110019] gi|194423059|gb|EDX39053.1| flagellar basal-body rod protein FlgG [Escherichia coli 101-1] gi|208726433|gb|EDZ76034.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4206] gi|208731719|gb|EDZ80407.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4045] gi|208738235|gb|EDZ85918.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4042] gi|209160539|gb|ACI37972.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4115] gi|209773358|gb|ACI84991.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773360|gb|ACI84992.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773362|gb|ACI84993.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773364|gb|ACI84994.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773366|gb|ACI84995.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209911591|dbj|BAG76665.1| flagellar basal-body rod protein FlgG [Escherichia coli SE11] gi|215264359|emb|CAS08716.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O127:H6 str. E2348/69] gi|217318690|gb|EEC27116.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. TW14588] gi|218351344|emb|CAU97050.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli 55989] gi|218360424|emb|CAQ97978.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli IAI1] gi|218364729|emb|CAR02419.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli S88] gi|218370405|emb|CAR18212.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli IAI39] gi|218431583|emb|CAR12462.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli UMN026] gi|222032831|emb|CAP75570.1| flagellar basal-body rod protein flgG [Escherichia coli LF82] gi|226898146|gb|EEH84405.1| flagellar basal-body rod protein flgG [Escherichia sp. 3_2_53FAA] gi|227836768|gb|EEJ47234.1| flagellar basal body rod protein FlgG [Escherichia coli 83972] gi|238861100|gb|ACR63098.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BW2952] gi|242376882|emb|CAQ31599.1| flagellar basal-body rod protein FlgG, subunit of Flagellar Motor Complex and Flagellum [Escherichia coli BL21(DE3)] gi|253324942|gb|ACT29544.1| flagellar basal-body rod protein FlgG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973085|gb|ACT38756.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli B str. REL606] gi|253977299|gb|ACT42969.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BL21(DE3)] gi|254591860|gb|ACT71221.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. TW14359] gi|257753210|dbj|BAI24712.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|257758465|dbj|BAI29962.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|257763797|dbj|BAI35292.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|260449782|gb|ACX40204.1| flagellar basal-body rod protein FlgG [Escherichia coli DH1] gi|281178187|dbj|BAI54517.1| flagellar basal-body rod protein FlgG [Escherichia coli SE15] gi|284920901|emb|CBG33964.1| flagellar basal-body rod protein FlgG [Escherichia coli 042] gi|290761971|gb|ADD55932.1| Flagellar basal-body rod protein flgG [Escherichia coli O55:H7 str. CB9615] gi|291324187|gb|EFE63609.1| flagellar basal-body rod protein FlgG [Escherichia coli B088] gi|291428948|gb|EFF01973.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1412] gi|291469912|gb|EFF12396.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|294490415|gb|ADE89171.1| flagellar basal-body rod protein FlgG [Escherichia coli IHE3034] gi|298279840|gb|EFI21348.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1302] gi|299877395|gb|EFI85606.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 196-1] gi|300297159|gb|EFJ53544.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 185-1] gi|300307084|gb|EFJ61604.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 200-1] gi|300318618|gb|EFJ68402.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 175-1] gi|300356868|gb|EFJ72738.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300397110|gb|EFJ80648.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 69-1] gi|300405501|gb|EFJ89039.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 84-1] gi|300410625|gb|EFJ94163.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 45-1] gi|300414174|gb|EFJ97484.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 115-1] gi|300421081|gb|EFK04392.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 182-1] gi|300450520|gb|EFK14140.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 116-1] gi|300456428|gb|EFK19921.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|300463628|gb|EFK27121.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 187-1] gi|300526440|gb|EFK47509.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 119-7] gi|300530554|gb|EFK51616.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300839701|gb|EFK67461.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 124-1] gi|300844944|gb|EFK72704.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 78-1] gi|301076719|gb|EFK91525.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|305852710|gb|EFM53158.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|306909862|gb|EFN40356.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|307553080|gb|ADN45855.1| flagellar basal-body rod protein FlgG [Escherichia coli ABU 83972] gi|308118355|gb|EFO55617.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 145-7] gi|309701350|emb|CBJ00651.1| flagellar basal-body rod protein FlgG [Escherichia coli ETEC H10407] gi|312286250|gb|EFR14163.1| flagellar basal-body rod protein FlgG [Escherichia coli 2362-75] gi|312945640|gb|ADR26467.1| flagellar basal body rod protein FlgG [Escherichia coli O83:H1 str. NRG 857C] gi|315060356|gb|ADT74683.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli W] gi|315135710|dbj|BAJ42869.1| flagellar basal-body rod protein flgG [Escherichia coli DH1] gi|315253879|gb|EFU33847.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 85-1] gi|315287367|gb|EFU46778.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 110-3] gi|315291072|gb|EFU50435.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 153-1] gi|315296709|gb|EFU56004.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 16-3] gi|315618248|gb|EFU98838.1| flagellar basal-body rod protein FlgG [Escherichia coli 3431] gi|320189761|gb|EFW64417.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC1212] gi|320196440|gb|EFW71063.1| Flagellar basal-body rod protein FlgG [Escherichia coli WV_060327] gi|320200974|gb|EFW75558.1| Flagellar basal-body rod protein FlgG [Escherichia coli EC4100B] gi|320637529|gb|EFX07329.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. G5101] gi|320643090|gb|EFX12291.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H- str. 493-89] gi|320648548|gb|EFX17203.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H- str. H 2687] gi|320653862|gb|EFX21936.1| flagellar basal body rod protein FlgG [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659342|gb|EFX26911.1| flagellar basal body rod protein FlgG [Escherichia coli O55:H7 str. USDA 5905] gi|320664477|gb|EFX31628.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. LSU-61] gi|323156885|gb|EFZ43019.1| flagellar basal-body rod protein FlgG [Escherichia coli EPECa14] gi|323163703|gb|EFZ49523.1| flagellar basal-body rod protein FlgG [Escherichia coli E128010] gi|323175691|gb|EFZ61285.1| flagellar basal-body rod protein FlgG [Escherichia coli 1180] gi|323185799|gb|EFZ71160.1| flagellar basal-body rod protein FlgG [Escherichia coli 1357] gi|323190590|gb|EFZ75862.1| flagellar basal-body rod protein FlgG [Escherichia coli RN587/1] gi|323379083|gb|ADX51351.1| flagellar basal-body rod protein FlgG [Escherichia coli KO11] gi|323937818|gb|EGB34082.1| flagellar basal-body rod protein FlgG [Escherichia coli E1520] gi|323942547|gb|EGB38714.1| flagellar basal-body rod protein FlgG [Escherichia coli E482] gi|323947620|gb|EGB43624.1| flagellar basal-body rod protein FlgG [Escherichia coli H120] gi|323953236|gb|EGB49102.1| flagellar basal-body rod protein FlgG [Escherichia coli H252] gi|323957902|gb|EGB53614.1| flagellar basal-body rod protein FlgG [Escherichia coli H263] gi|323962677|gb|EGB58255.1| flagellar basal-body rod protein FlgG [Escherichia coli H489] gi|323967019|gb|EGB62445.1| flagellar basal-body rod protein FlgG [Escherichia coli M863] gi|323973333|gb|EGB68522.1| flagellar basal-body rod protein FlgG [Escherichia coli TA007] gi|323976549|gb|EGB71637.1| flagellar basal-body rod protein FlgG [Escherichia coli TW10509] gi|324007918|gb|EGB77137.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 57-2] gi|324013352|gb|EGB82571.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 60-1] gi|324017418|gb|EGB86637.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 117-3] gi|324117351|gb|EGC11258.1| flagellar basal-body rod protein FlgG [Escherichia coli E1167] gi|326339300|gb|EGD63114.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. 1125] gi|326344739|gb|EGD68487.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. 1044] gi|327253477|gb|EGE65115.1| flagellar basal-body rod protein FlgG [Escherichia coli STEC_7v] gi|330910892|gb|EGH39402.1| flagellar basal-body rod protein FlgG [Escherichia coli AA86] gi|331038420|gb|EGI10640.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331045088|gb|EGI17215.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|331055388|gb|EGI27397.1| flagellar basal-body rod protein FlgG [Escherichia coli TA206] gi|331060906|gb|EGI32870.1| flagellar basal-body rod protein FlgG [Escherichia coli TA143] gi|331065063|gb|EGI36958.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331070241|gb|EGI41607.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|331075558|gb|EGI46856.1| flagellar basal-body rod protein FlgG [Escherichia coli H591] gi|331080211|gb|EGI51390.1| flagellar basal-body rod protein FlgG [Escherichia coli H299] gi|332102086|gb|EGJ05432.1| flagellar basal-body rod protein FlgG [Shigella sp. D9] gi|333004888|gb|EGK24408.1| flagellar basal-body rod protein FlgG [Shigella flexneri VA-6] Length = 260 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|331652131|ref|ZP_08353150.1| flagellar basal-body rod protein FlgG [Escherichia coli M718] gi|331050409|gb|EGI22467.1| flagellar basal-body rod protein FlgG [Escherichia coli M718] Length = 260 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNETGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|293414371|ref|ZP_06657020.1| flagellar basal-body rod protein FlgG [Escherichia coli B185] gi|291434429|gb|EFF07402.1| flagellar basal-body rod protein FlgG [Escherichia coli B185] Length = 260 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|289548122|ref|YP_003473110.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] gi|289181739|gb|ADC88983.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] Length = 454 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKIS 57 M SF + A + +DN++N +T+GF+ + F +V+ ++ N + I Sbjct: 1 MLRSFFNAVTGLNAYRTWMDITSDNLANVNTIGFKASRPIFQDVISSVTVGLNTVTNTIK 60 Query: 58 FVASGKEYLSKE------VGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVT 109 G L +G+F TG D A++G F L+ P TRDG F+++ Sbjct: 61 TTTYGAGVLIDSTQKIWTIGNFKQTGINTDLAIQGRGLFILKDPISGAHYYTRDGEFRLS 120 Query: 110 DDGSLVSASG 119 DG +V+++G Sbjct: 121 RDGFMVNSAG 130 >gi|238028849|ref|YP_002913080.1| flagellar hook protein FlgE [Burkholderia glumae BGR1] gi|237878043|gb|ACR30376.1| Hypothetical protein bglu_1g33140 [Burkholderia glumae BGR1] Length = 412 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +TVGF+ +FS+ V GA+ N I Sbjct: 6 GLSGLQGASSDLDVIGNNIANANTVGFKAASAQFSDLYANSVSGAVANGIGIGTQLATVA 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 + + + G F ++ L A+ G+ +F + S TRDG+F G++ +++G Sbjct: 66 QVF---QQGGFATSQNPLSMAISGNGFFQVNSNGVTTYTRDGQFSPNASGNITNSAGGQL 122 Query: 120 -KYPVLDMAS------VPIQIPQKD 137 Y V S VP+ PQ + Sbjct: 123 MGYGVNADGSINTSAIVPLTAPQGN 147 >gi|197335127|ref|YP_002156698.1| flagellar basal-body rod protein FlgG [Vibrio fischeri MJ11] gi|197316617|gb|ACH66064.1| flagellar basal-body rod protein FlgG [Vibrio fischeri MJ11] Length = 262 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 48/241 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + ++T+++N++N TVGF+ + F ++ N + + Sbjct: 11 GLDAQ---QTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNTELPTGLM 67 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + ++ + G+ +T +D +EG +F + P G I TR+G+F + D+G+ Sbjct: 68 LGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQFTLNDEGA 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V+ Y + I +P+ VG GE+S Q +VI + +VD Sbjct: 128 IVTTGAGYRL----EPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQ--INTVD--- 178 Query: 168 GFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 F+ G+ P N+ PT P E G+ V++ LE SN N E+ MI Sbjct: 179 -FINP--GGLEPVGQNLYLPTGASGDPQEGTPGLEGFGAVRQSMLEASNVNVTEELVNMI 235 Query: 215 H 215 Sbjct: 236 E 236 >gi|281411901|ref|YP_003345980.1| fagellar hook-basal body protein [Thermotoga naphthophila RKU-10] gi|281373004|gb|ADA66566.1| fagellar hook-basal body protein [Thermotoga naphthophila RKU-10] Length = 755 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 28/159 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ + + V +N+SN +TVGF+ +V F ++ Q I Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLA-------QTIKAGR 53 Query: 61 SGKEY----------LSKEV---------GSFISTGTELDFALEGDAWFALESPRGIILT 101 S +E L +V GSF +TG + D A++GD +F + T Sbjct: 54 SSQENVGGTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGSSYYYT 113 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF 140 R G F + +G+L+ S Y V +V Q P+ E + Sbjct: 114 RAGAFTLDSNGNLIQTSTGYKVQGWTAV--QDPETGERY 150 >gi|89902477|ref|YP_524948.1| hypothetical protein Rfer_3717 [Rhodoferax ferrireducens T118] gi|89347214|gb|ABD71417.1| protein of unknown function DUF1078-like [Rhodoferax ferrireducens T118] Length = 404 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 7/127 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A + L + +N++N +T G ++ + +F ++V + + + Sbjct: 2 SFQTGLSGLNASSRSLDVIGNNIANANTTGMKSSRAEFGDLVASSLGAGGSSGAGIGVAV 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 +S++ G+ TG +LD A+ G +F L P G TRDG FK+ +G + + SG Sbjct: 62 GSISQQFSQGNINITGNDLDVAINGGGFFQLALPDGSAAYTRDGSFKLDANGYIKTNSGA 121 Query: 121 ----YPV 123 YP Sbjct: 122 NVLGYPT 128 >gi|120554035|ref|YP_958386.1| flagellar basal body rod protein FlgG [Marinobacter aquaeolei VT8] gi|120323884|gb|ABM18199.1| flagellar basal-body rod protein FlgG [Marinobacter aquaeolei VT8] Length = 262 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 40/261 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GL+AQ + +ST+++N++N +T GF+ K F +++ I Sbjct: 11 GLSAQ---DINMSTISNNLANVNTTGFKRDKAVFQDLLYQINRQPGGLSTQNSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + + V + K++ G+ T LD A+ G + + P G I TRDG+F++ Sbjct: 68 LGTGVRVVGTVKQF---SQGNLQITEQPLDMAINGRGFLQILLPDGQIAYTRDGQFQLNV 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKV-IATMGLYSVD 164 +G +V+ G +L+ A I +P +G G ++ Q V + + L Sbjct: 125 NGDVVNPDGY--LLEPA---INVPNNATNITIGTDGTVTAITDDQAAPVNVGQITLVDFI 179 Query: 165 MSQGFVRRENSGISPNIPP-TPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 QG N+ I P+E +G+ T+++G LE SN + E+ MI TQ+ Sbjct: 180 NPQGLQAIGNNLFKETISSGNPIEGQAGLLGLGTIEQGSLEASNVEVVEELVNMIT-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRN 240 + + + ML+ I N Sbjct: 239 AYEMNSKVVSTADQMLQFITN 259 >gi|254227983|ref|ZP_04921413.1| Flagellar hook protein FlgE [Vibrio sp. Ex25] gi|262396035|ref|YP_003287888.1| flagellar hook protein FlgE [Vibrio sp. Ex25] gi|151939479|gb|EDN58307.1| Flagellar hook protein FlgE [Vibrio sp. Ex25] gi|262339629|gb|ACY53423.1| flagellar hook protein FlgE [Vibrio sp. Ex25] Length = 398 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFS----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K+ GS TG +D A+ G +F + G + TR G F D + + SG Sbjct: 58 QNFDKD-GSISGTGRAMDLAINGGGFFVTKDNMGQTLYTRSGVFATDKDNFVTANSG 113 >gi|91791415|ref|YP_561066.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] gi|91713417|gb|ABE53343.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 253 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 10/143 (6%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF----VASGKEYLSKE 69 A +++L +A N++N T G++T ++ F VV +++ Q +S V + + L Sbjct: 14 AKQKQLDAIAHNIANVSTPGYKTSQMSFMTVVQEDRDNSGQIVSSQGLGVMAQQSPLDMS 73 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPVLDMAS 128 VG TG LD A+ G + +E G +L +R GR G L + +G L + S Sbjct: 74 VGKMEQTGRPLDVAINGAGFLEVEQGNGKLLYSRGGRLITDAQGYLSTENG----LRLTS 129 Query: 129 VPIQIPQKDEIFNVGEKGEISQK 151 + +QIP E + G +S K Sbjct: 130 M-LQIPPDAEDVRIATDGMLSAK 151 >gi|13472576|ref|NP_104143.1| flagellar basal body rod protein FlgG [Mesorhizobium loti MAFF303099] gi|14023322|dbj|BAB49929.1| flagellar basal body distal rod protein; FlgG [Mesorhizobium loti MAFF303099] Length = 262 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 20/134 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI------SFVASG----- 62 A + L +A+N++N +T G++ + +FS+++ + D Q + S V G Sbjct: 13 AQQTNLEVIANNIANINTTGYKRARAEFSDLLYQV--DRTQGVPNRSNASLVPEGVSIGL 70 Query: 63 --KEYLSKEV---GSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS 116 K + V G STG D AL G WF +E + G + TR G F G LV+ Sbjct: 71 GVKTTAVRNVHTQGELTSTGNSFDMALTGRGWFQIEGADGGTLYTRAGAFNTNATGQLVT 130 Query: 117 ASGKYPVLDMASVP 130 G V+ +VP Sbjct: 131 VDGAN-VIPAITVP 143 >gi|30248323|ref|NP_840393.1| flagellar basal body rod protein FlgF [Nitrosomonas europaea ATCC 19718] gi|30138209|emb|CAD84217.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 247 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 28/233 (12%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTE 79 +TV+ N++N T GFR F V + + +FV G+ T Sbjct: 20 ATVSHNLANASTTGFRAQTDAFRAV--PVYGESLPTRAFVLDSTTGADFTPGAIQQTNRP 77 Query: 80 LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE 138 LD A++G W A++ G TR G K+ +G L + G + S PI IP D Sbjct: 78 LDVAVQGSGWIAVQLENGEEAYTRHGNLKMDANGILQTQQGFN--IKGESGPITIP-PDS 134 Query: 139 IFNVGEKGEIS-----QKGKVIATMGLYS---------VDMSQGFVRRENSGISPNIPPT 184 +G+ G +S + ++ +G V G R + G +P Sbjct: 135 RIAIGKDGSVSVLPSDSRMTAVSIVGRIKLVDPPAEQLVRGEDGLFRLKEGGQAPVSEKV 194 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 L D G LE SN N + EM +MI L ++F+ +++ +++ +A Sbjct: 195 ALID--------GALESSNVNVISEMVKMITLARQFDMQMKMLENAQQNAQQA 239 >gi|59712479|ref|YP_205255.1| flagellar basal body rod protein FlgG [Vibrio fischeri ES114] gi|59480580|gb|AAW86367.1| flagellar distal rod protein FlgG [Vibrio fischeri ES114] Length = 262 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 48/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + ++T+++N++N TVGF+ + F ++ N + + Sbjct: 11 GLDAQ---QTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNTELPTGLM 67 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + ++ + G+ +T +D +EG +F + P G I TR+G+F + D+G+ Sbjct: 68 LGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQFTLNDEGA 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQ 167 +V+ Y + I +P+ VG GE+S Q +VI + +VD Sbjct: 128 IVTTGAGYRL----EPEIVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQ--INTVD--- 178 Query: 168 GFVRRENSGISP---NIP-PT-----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 F+ G+ P N+ PT P E G+ V++ LE SN N E+ MI Sbjct: 179 -FINP--GGLEPVGQNLYLPTGASGDPQEGTPGLDGFGAVRQSMLEASNVNVTEELVNMI 235 Query: 215 HLTQKF 220 + + Sbjct: 236 EAQRVY 241 >gi|15616300|ref|NP_244605.1| flagellar basal-body rod protein [Bacillus halodurans C-125] gi|10176362|dbj|BAB07457.1| flagellar basal-body rod protein [Bacillus halodurans C-125] Length = 274 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 43/269 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---------VGAIKNDIDQKISFVA 60 A + +QR + +N++N +T G++ + G + + I + Sbjct: 10 AGMITQQQRQEMLTNNLANVNTPGYKADQAAIRAFPNMLIAAMNTGNVPKGVAPVIGELT 69 Query: 61 SGKEYLSKEV-----GSFISTGTELDFAL----------EGDAW---FALESPRG-IILT 101 +G YL + + G + T D AL G W + +++ G + T Sbjct: 70 TGV-YLQERMPNFRQGDLVETQNNTDVALLQGVMPTNEENGQPWALFYTVQNENGEVRYT 128 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--------EISQKGK 153 R+G F V DG L + G Y VL P+Q+ +E FNV G I Q Sbjct: 129 RNGNFTVDGDGFLTTGDGFY-VLGTDGNPLQV--NNEWFNVDGDGMITDEAGAAIGQINV 185 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 V+A + V G +R E G +P +++GF+E SN ++ M +M Sbjct: 186 VVAEDPMQLVKEGNGLLRFEGDG---ELPTGVGNAAVNYQLQQGFIERSNVDAAQTMTEM 242 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + F + ++ ++S+ +A+ + Sbjct: 243 MQAYRTFEANQQVLRAYDESLGKAVNEVG 271 >gi|262173355|ref|ZP_06041032.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451] gi|261890713|gb|EEY36700.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451] Length = 243 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 ++N+SN DT GFR ++ +E + D + + V + + G I TG LD Sbjct: 23 SNNLSNADTAGFRA-DMERAESFQLYGSGFDGR-TMVVTNSATTRFDSGDVIKTGRPLDV 80 Query: 83 ALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ G+ + +E+P+ G TR G KV G++ +PVL S + +P+ +I Sbjct: 81 AIIGEGYLTVEAPQGGEAYTRAGNIKVDAFGAMTING--FPVLG-ESGSMVLPEYQKI-E 136 Query: 142 VGEKGEIS-----QKGKV-IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK 195 +GE+G++S K+ + T+ L + Q +++E+ + N+ P V + Sbjct: 137 IGERGQVSVIPPGGGAKIEVGTLKLAKPPIDQ--LQKESDSLLHNVNGEPFPVDETVQLV 194 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKF 220 +E SN +++ E+ ++ LT+ F Sbjct: 195 PEHVEGSNVSAVDELLSVMSLTRNF 219 >gi|319409169|emb|CBI82813.1| Flagellar hook protein FlgE [Bartonella schoenbuchensis R1] Length = 403 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 11/131 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG-KEYL 66 G++ A RLS VA+N++N +T+G++ V+FS V + ++V G + Y+ Sbjct: 10 GVSGMNAQGTRLSGVAENVANVNTIGYKRTDVQFSNYVIPSGD-----YAYVPGGARSYV 64 Query: 67 SKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 ++ G +TG D ++G+ +F + GI LTR G F DG + + +G Y Sbjct: 65 GHDISISGPARATGRMGDVMIDGNGFFRVADENGIEYLTRAGSFSRDKDGYVRNLAGYY- 123 Query: 123 VLDMASVPIQI 133 +LD +QI Sbjct: 124 LLDEDGQRVQI 134 >gi|1086561|gb|AAB68968.1| FlgG [Agrobacterium tumefaciens] gi|2459714|gb|AAB71790.1| FlgG [Agrobacterium tumefaciens] Length = 262 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 48/252 (19%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKI----SFVASGK 63 A + L +A+N++N +T G++ + +F++++ + N +Q I + + G Sbjct: 13 AQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQAIVPEGANIGLGV 72 Query: 64 EYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 + + G+ I TG +LD A+ G WF R L R G F DG+LV+ Sbjct: 73 QTSAVRNIHTQGNLIETGNKLDVAIIGQGWFPDRGRRWFDALQRAGAFNKNADGNLVTVD 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ-GFVRRENSGI 177 G Y V+ ++P + I++ G+V A +G + D +Q G + N Sbjct: 133 G-YNVIPNINIPTD----------AQDITITRTGQVTARIG-NAADFTQLGQLTIANFAN 180 Query: 178 SPNIPP--------TPL---------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P TP +D S VK+ +LE SN +++ E+ +I + + Sbjct: 181 EAGLKPLGDNLFSQTPASGAPVVGVPDDPSYGYVKQSYLEGSNVDAVKEITDLITAQRAY 240 Query: 221 ---NSITTLIDE 229 + + T DE Sbjct: 241 EMNSKVITTADE 252 >gi|327478809|gb|AEA82119.1| flagellar basal body FlaE domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 396 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L A+ ++L+T+ +N++N+ TVGF++ + F + Q + G Sbjct: 2 SFNIALTGLSAVNEQLNTIGNNIANSGTVGFKSSRTNFGSLYAET-----QAMGVEVIGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK-- 120 + G+ ST LD A+ G +F + G + TR G F D + ++ G+ Sbjct: 57 TQSISQGGALTSTNRTLDLAISGGGFFVTRASNGDVGYTRAGIFGTDKDSYITNSLGQRL 116 Query: 121 --YPV 123 YP Sbjct: 117 QGYPA 121 >gi|322432989|ref|YP_004210238.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] gi|321165216|gb|ADW70920.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] Length = 412 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----KNDIDQKISFV 59 F + L+ +A + +L V++N++N DTVGF+ V FS+V ND Q V Sbjct: 4 FGVPLSGLIASQSQLQAVSNNLANLDTVGFKDQNVNFSDVFAQSSLNNGSNDPVQTGLGV 63 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + + G+ +TG + AL G+ +F ++ G TR G F G LV+ S Sbjct: 64 NASQTTSDFTDGAVSATGIASNMALTGNGFFVTKTATGATAYTRAGDFTKNSSGQLVTPS 123 Query: 119 GK----YPVLD 125 G YP + Sbjct: 124 GDLVMGYPAAN 134 >gi|156934438|ref|YP_001438354.1| flagellar basal body rod protein FlgG [Cronobacter sakazakii ATCC BAA-894] gi|156532692|gb|ABU77518.1| hypothetical protein ESA_02269 [Cronobacter sakazakii ATCC BAA-894] Length = 260 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 116/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHTQ-GNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIATM-----GL 160 +G LV+A G P + + + + I +D + +V ++G + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITVGRDGVVSVTQQGTAAPVQVGQINLTTFMNDSGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-TPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|294635612|ref|ZP_06714089.1| flagellar basal-body rod protein FlgG [Edwardsiella tarda ATCC 23685] gi|291091064|gb|EFE23625.1| flagellar basal-body rod protein FlgG [Edwardsiella tarda ATCC 23685] Length = 260 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 36/260 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +A+N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLEAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQTTLPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G E L + G+ T D A++G +F + P G TRDG F+V +G Sbjct: 68 LGTGVRPVATERLHSQ-GNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSFQVDQNG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKV-----IATMGLY 161 LV+ASG + V ++P +D I +V +G+ + Q G++ I GL Sbjct: 127 QLVTASG-FQVSPAITIPANATSMTIGRDGIVSVTVQGQAAAQQVGQLTLSTFINDAGLE 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 SV + + +S +P TP + +G+ + +G++E SN N E+ MI TQ+ Sbjct: 186 SV--GENLYQETDSSGAP-TESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQ-TQRAY 240 Query: 222 SITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 241 EINSKAISTSDQMLQRLTQL 260 >gi|47565441|ref|ZP_00236482.1| flagellar basal-body rod protein flgF, putative [Bacillus cereus G9241] gi|47557431|gb|EAL15758.1| flagellar basal-body rod protein flgF, putative [Bacillus cereus G9241] Length = 257 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 29/230 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTINS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--KVIATMGLYSVDMSQG 168 D L ++SG Y V+D+ + ++IP+ +I V G + +G IA + +VD Sbjct: 123 DRYLQTSSGAY-VMDVNNERVRIPEGAKIA-VQADGTLYDEGTQNNIARLQTKTVDAEAN 180 Query: 169 --FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 ++REN + + + DL T VK LE+SN + EM ++ Sbjct: 181 ARLMQRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|229178180|ref|ZP_04305551.1| Flagellar basal-body rod protein flgG [Bacillus cereus 172560W] gi|228605310|gb|EEK62760.1| Flagellar basal-body rod protein flgG [Bacillus cereus 172560W] Length = 257 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 35/233 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L ++SG Y V+D+ + I+IP+ ++ V G E++Q IA + +VD Sbjct: 123 DRYLQTSSGAY-VMDVNNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDAE 178 Query: 167 QG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 V+REN + NI P + +G+ VK LE+SN + EM ++ Sbjct: 179 TNARLVQRENKSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 228 >gi|239815249|ref|YP_002944159.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] gi|239801826|gb|ACS18893.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] Length = 262 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 55/239 (23%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----------------VVGAIKN 50 G+ AQ + + T+A+N++N +T GF+ KV FS+ ++GA ++ Sbjct: 11 GMQAQ---QLNVDTIANNLANVNTTGFKKSKVGFSDLMVREAGRLAQTPQEAGILGA-ES 66 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 + + + K + ++G T + D A++G+ + + P G TR G FKV Sbjct: 67 RLGAGVGIASVSKLF---DMGDLKKTESAFDIAIQGEGFLEVTMPDGSSSFTRGGTFKVN 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG- 168 DG L++ SG +P+ ++P D N+ +I G+V +G S + G Sbjct: 124 RDG-LLATSGGFPLKSNVAIP------DNAQNM----QIDGDGRVRVQVGGQSTPIEVGQ 172 Query: 169 --FVR---------------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 VR R ++G I ED G + +GFLE SN EM Sbjct: 173 LDLVRFTSPSALLPQGDNLYRSSTGSGEAIAAKASEDGMG-SFAQGFLEGSNVKLTEEM 230 >gi|324325790|gb|ADY21050.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis serovar finitimus YBT-020] Length = 257 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 29/230 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTINS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--KVIATMGLYSVDMSQG 168 D L ++SG Y V+D+ + ++IP+ +I V G + +G IA + +VD Sbjct: 123 DRYLQTSSGAY-VMDVNNERVRIPEGAKIA-VQADGTLYDEGTQNNIARLQTKTVDAEAN 180 Query: 169 --FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 ++REN + + + DL T VK LE+SN + EM ++ Sbjct: 181 SRLMQRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|88858141|ref|ZP_01132783.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas tunicata D2] gi|88819758|gb|EAR29571.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas tunicata D2] Length = 262 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/259 (22%), Positives = 114/259 (44%), Gaps = 37/259 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + +S +++N++N TVG++ + F +++ G D + Sbjct: 11 GLDAQ---QTDISVISNNLANASTVGYKKSRAVFEDLLYQNINQPGGRSSQDTEMPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ I+T +D+ ++G +F + P G + +R G+F DG Sbjct: 68 LGAGTKVVATQKNFSQGNMITTDNSMDWMIQGQGFFEVLLPDGSLAYSRAGQFTTDGDGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA---TMGLYSVD------ 164 +V++ +PV + +P + + + GE+S + + A +G ++ Sbjct: 128 VVTSGAGFPV----QPEMNVPNDAQSLTISQDGEVSVRVRGQADNVVIGQLTISDFINPS 183 Query: 165 ----MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 M Q +P I P D GV V+ G LE SN N+ E+ +I TQ+ Sbjct: 184 GLEPMGQNLFTETAVSGAP-IQGNPGADGLGVIVQ-GALETSNVNTTEELVNLIE-TQRI 240 Query: 221 NSITTLIDENEKSMLEAIR 239 + + + + ML I Sbjct: 241 YEMNSKVISSVDQMLNFIN 259 >gi|77918760|ref|YP_356575.1| flagellar basal body rod protein FlgG [Pelobacter carbinolicus DSM 2380] gi|77544843|gb|ABA88405.1| flagellar biosynthesis protein [Pelobacter carbinolicus DSM 2380] Length = 261 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 109/257 (42%), Gaps = 39/257 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDIDQKISF-VASGKE 64 A + + +A N++N ++ GF+ + F +++ + ++Q S V G Sbjct: 14 AQQVNMDVIAHNLANVNSAGFKKSRADFQDILYQTVKVAGSDGSSGVEQPTSIQVGLGSR 73 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G F TG +LD A+EG +F + G TR G FK G +V++ G Sbjct: 74 VAAIQKVFTTGDFQQTGNDLDIAIEGSGFFEITLANGDTAYTRAGAFKKDGTGRIVTSDG 133 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI----------SQKGKVIAT-----MGLYSVD 164 YP+ S I IP+ ++G G + +Q G + T GL S+ Sbjct: 134 -YPL----SPEIIIPENATQVSIGNYGAVEVLLDGQNTPTQIGTITLTRFSNPAGLNSIG 188 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + E + P ED G ++ +GFLE SN + M EM MI Q+ I Sbjct: 189 HN---LFTETPTTGTPVTGNPGEDGFG-SLSQGFLEGSNVSIMEEMVNMIA-GQRAYEIN 243 Query: 225 TLIDENEKSMLEAIRNI 241 + + ML+ N+ Sbjct: 244 SKAIKTADEMLQMTNNL 260 >gi|53717914|ref|YP_106900.1| flagellar hook protein FlgE [Burkholderia pseudomallei K96243] gi|53724565|ref|YP_104798.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 23344] gi|67641538|ref|ZP_00440315.1| flagellar hook protein FlgE [Burkholderia mallei GB8 horse 4] gi|76810959|ref|YP_331879.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1710b] gi|121599135|ref|YP_994291.1| flagellar hook protein FlgE [Burkholderia mallei SAVP1] gi|124384593|ref|YP_001028060.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10229] gi|126449658|ref|YP_001082867.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10247] gi|126453793|ref|YP_001064564.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1106a] gi|167001537|ref|ZP_02267332.1| flagellar hook protein FlgE [Burkholderia mallei PRL-20] gi|167717660|ref|ZP_02400896.1| flagellar hook protein FlgE [Burkholderia pseudomallei DM98] gi|167736703|ref|ZP_02409477.1| flagellar hook protein FlgE [Burkholderia pseudomallei 14] gi|167813802|ref|ZP_02445482.1| flagellar hook protein FlgE [Burkholderia pseudomallei 91] gi|167822318|ref|ZP_02453789.1| flagellar hook protein FlgE [Burkholderia pseudomallei 9] gi|167843908|ref|ZP_02469416.1| flagellar hook protein FlgE [Burkholderia pseudomallei B7210] gi|167892410|ref|ZP_02479812.1| flagellar hook protein FlgE [Burkholderia pseudomallei 7894] gi|167900908|ref|ZP_02488113.1| flagellar hook protein FlgE [Burkholderia pseudomallei NCTC 13177] gi|167909127|ref|ZP_02496218.1| flagellar hook protein FlgE [Burkholderia pseudomallei 112] gi|167917164|ref|ZP_02504255.1| flagellar hook protein FlgE [Burkholderia pseudomallei BCC215] gi|217424944|ref|ZP_03456440.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 576] gi|226199793|ref|ZP_03795344.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pakistan 9] gi|242315744|ref|ZP_04814760.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106b] gi|254182140|ref|ZP_04888737.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1655] gi|254188070|ref|ZP_04894582.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pasteur 52237] gi|254196353|ref|ZP_04902777.1| flagellar basal body protein FlaE [Burkholderia pseudomallei S13] gi|254201896|ref|ZP_04908260.1| flagellar hook protein FlgE [Burkholderia mallei FMH] gi|254207230|ref|ZP_04913581.1| flagellar hook protein FlgE [Burkholderia mallei JHU] gi|254259636|ref|ZP_04950690.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1710a] gi|254295814|ref|ZP_04963271.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 406e] gi|254359732|ref|ZP_04976003.1| flagellar hook protein FlgE [Burkholderia mallei 2002721280] gi|52208328|emb|CAH34261.1| putative flagellar hook protein [Burkholderia pseudomallei K96243] gi|52427988|gb|AAU48581.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 23344] gi|76580412|gb|ABA49887.1| Flagella basal body rod protein [Burkholderia pseudomallei 1710b] gi|121227945|gb|ABM50463.1| flagellar hook protein FlgE [Burkholderia mallei SAVP1] gi|124292613|gb|ABN01882.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10229] gi|126227435|gb|ABN90975.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106a] gi|126242528|gb|ABO05621.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10247] gi|147747790|gb|EDK54866.1| flagellar hook protein FlgE [Burkholderia mallei FMH] gi|147752772|gb|EDK59838.1| flagellar hook protein FlgE [Burkholderia mallei JHU] gi|148028946|gb|EDK86878.1| flagellar hook protein FlgE [Burkholderia mallei 2002721280] gi|157805870|gb|EDO83040.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 406e] gi|157935750|gb|EDO91420.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pasteur 52237] gi|169653096|gb|EDS85789.1| flagellar basal body protein FlaE [Burkholderia pseudomallei S13] gi|184212678|gb|EDU09721.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1655] gi|217391964|gb|EEC31990.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 576] gi|225928144|gb|EEH24180.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pakistan 9] gi|238522489|gb|EEP85933.1| flagellar hook protein FlgE [Burkholderia mallei GB8 horse 4] gi|242138983|gb|EES25385.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106b] gi|243062738|gb|EES44924.1| flagellar hook protein FlgE [Burkholderia mallei PRL-20] gi|254218325|gb|EET07709.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1710a] Length = 413 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +TVGF+ +FS+ V A+ N I + +AS Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIG-TMLASV 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 ++ S+ G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Sbjct: 65 QQQFSQ--GTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNSQGLNL 122 Query: 120 -KYP------VLDMASVPIQIPQKD 137 Y + A+VP+Q P + Sbjct: 123 MGYAANANGVINTAATVPLQAPTTN 147 >gi|254785373|ref|YP_003072802.1| flagellar basal body rod protein FlgF [Teredinibacter turnerae T7901] gi|237683950|gb|ACR11214.1| flagellar basal-body rod protein FlgF [Teredinibacter turnerae T7901] Length = 250 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 64/238 (26%) Query: 18 RLSTV-ADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 R TV A+N++N +T GF R++ + F E + Y +E Sbjct: 17 RAQTVHANNLANVNTTGFKADFARARSMPIYFGEG---------------HPTRAYALEE 61 Query: 70 V-------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKY 121 + G + TG +LD A+EGD + A++SP G TR G + G L + +G Sbjct: 62 IPATDFRQGPLVETGRDLDVAVEGDGFIAVQSPDGSEAYTRAGSLFIDALGMLRTGNG-L 120 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 PVL PI IP EK EIS G + VD R I Sbjct: 121 PVLGNGG-PIAIP-------AAEKVEISGDGSITVIALGQGVDAPVQVDR-----IKLVN 167 Query: 182 PPTP------------LEDLSG-------VTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 PPT L+D G V + GF+E SN N++ E+ ++ L +++ Sbjct: 168 PPTDTIQRGIDGLIHLLDDAQGELPADGNVRIISGFVEGSNVNAVNELTSVMSLARQY 225 >gi|84514832|ref|ZP_01002195.1| flagellar proximal rod protein FlgF [Loktanella vestfoldensis SKA53] gi|84510991|gb|EAQ07445.1| flagellar proximal rod protein FlgF [Loktanella vestfoldensis SKA53] Length = 253 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 30/239 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +I L + L A NM+N + GFR E + DQ S V Sbjct: 1 MDRNIHIALNNLRNISSELRVNAQNMANANVPGFRADLSVTRE--ASFLTPFDQFRSRVY 58 Query: 61 S---GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLV 115 S + S + G +T E+D A++G +F + G L+R G D +V Sbjct: 59 SQEASQSLFSTDEGGLQNTEAEMDLAIQGQGYFYIAPSSGGDTALSRRGDLSFDLDRFVV 118 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----------GKVIATMGLYSVD 164 +G +LD+A PIQ+P I V E G+I + G +IAT V Sbjct: 119 DGAGNK-LLDVALNPIQLPPTRRIV-VEETGQIQMELLDAPEGTFVAGPIIATSQADDVV 176 Query: 165 MSQ---GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +S+ G +R P E + +GFLE+SN +++ + Q I ++F Sbjct: 177 LSKSPDGHIRPVGQADLP-------EPDQRARLTQGFLENSNVDTIGSLIQNIESQRQF 228 >gi|126441055|ref|YP_001057322.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|126220548|gb|ABN84054.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 668] Length = 413 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +TVGF+ +FS+ V A+ N I + +AS Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIG-TMLASV 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 ++ S+ G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Sbjct: 65 QQQFSQ--GTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNSQGLNL 122 Query: 120 -KYP------VLDMASVPIQIPQKD 137 Y + A+VP+Q P + Sbjct: 123 MGYAANANGVINTAATVPLQAPTTN 147 >gi|261420741|ref|YP_003254423.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|319768411|ref|YP_004133912.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261377198|gb|ACX79941.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317113277|gb|ADU95769.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 276 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 37/263 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-- 70 LA E+R+ + +N++N +T G++ + + ++ + AS + ++ V Sbjct: 13 LAQERRVDWLTNNLANAETPGYKADAAAMRAFPELLMSRLEDQPIPTASRRAIPTQTVIG 72 Query: 71 -----------------GSFISTGTELDFAL-------------EGDAWFALESPRG-II 99 G TG D AL G +FA+ + +G + Sbjct: 73 PLVTGVYMQELIPNFRQGDVKETGLATDIALVDGQVPVDRASGQRGALFFAVANGQGEVR 132 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 TR+G F ++ DG L + G Y VLD +IP E F+V + G I + +G Sbjct: 133 YTRNGHFTLSPDGYLTTQEGWY-VLDANGE--RIPLSSERFSVRDDGTIIDENGTATRLG 189 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + Q V+ N P P + TVK+ FLE SN + M ++ + Sbjct: 190 VAFAANPQTLVKEGNGLFRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYR 249 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + ++ ++S+ +A+ + Sbjct: 250 TFEANQKIVQAYDRSLDKAVNEV 272 >gi|85710165|ref|ZP_01041230.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] gi|85688875|gb|EAQ28879.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] Length = 247 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 84/224 (37%), Gaps = 25/224 (11%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 R VA+N++N T GFR K F+ +++ + S TG Sbjct: 18 RQRMVANNLANASTPGFR--KEVFTVTPSTLRDGSIEARSLAKGAVRSADMAPAKVNPTG 75 Query: 78 TELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ- 135 LD A+EG+A A +SP G + +R G +V G L + G PVL + P+ +P Sbjct: 76 QPLDIAVEGEALIAFQSPGGGEVYSRRGDLRVAPTGLLENGEG-LPVLGESGAPVTVPAG 134 Query: 136 ------------KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 + GE+ + K+ + G + F+R G+ P P Sbjct: 135 FRVTVAPDGTLLASDPAAPGEEPAAIDRIKLASPQGSALAKGTDSFLRVPGGGVLPTDP- 193 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 V G LE SN + + MI + F +I Sbjct: 194 -------TARVIPGALEGSNVETAGTLIDMIDAQRAFEQRARII 230 >gi|312880336|ref|ZP_07740136.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] gi|310783627|gb|EFQ24025.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] Length = 264 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 27/236 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV-GAIKNDIDQKIS---FVA 60 G +A L E+ L V +N++N DT GFR + F EV+ ++ ++ I F Sbjct: 8 GTSAMLVQEKMLDVVGNNLANVDTSGFRARIAVNKSFPEVLMDRVERYPEEGIGPKRFNP 67 Query: 61 SGK--------------EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 G+ + G T LD AL+ + +F ++ G TR G Sbjct: 68 RGRVPIGTLSLANVLHETAMRTAPGVMQVTNAPLDVALQEEGFFVVQDGAGNTFYTRSGH 127 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI-FNVGEKGEISQKGKVIATMGLYSVD 164 F+ D G LV+ G D +V I D + +++ ++G++ G V + + Sbjct: 128 FQKNDQGQLVTHDGMLVQGDGGAVEI----GDAVRYSLNDRGQLLVNGAVAGQLQVVRFP 183 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S ++ E++ V GFLE SN N + EM +MI + + Sbjct: 184 TPTRMRHVGKSLLAETPDSGAPEEVEQPKVAVGFLERSNVNVVEEMSRMIEANRAY 239 >gi|163750569|ref|ZP_02157807.1| flagellar basal-body rod protein FlgF [Shewanella benthica KT99] gi|161329724|gb|EDQ00713.1| flagellar basal-body rod protein FlgF [Shewanella benthica KT99] Length = 246 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 25/216 (11%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF+ + + + A + ++ F + G +TG Sbjct: 19 LAVRANNLANANTDGFKADMAQ-ARSMQAFGEGLPTRV-FAMTESPSADFTAGPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++GD W A++S G TR G G L + G P++ A PI +P Sbjct: 77 DLDIAVKGDGWIAVQSADGGEAYTRSGSLSFDTTGLLRNDRGN-PIMGDAG-PIVLPLPI 134 Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSV--DMSQGFVRREN------SGISPNIPPT 184 E + + G IS + +VI +G + +Q +R E+ SG N P Sbjct: 135 EKIEIAQDGTISVRPLGATAEVIEVVGRIKLVNPGNQNLMRGEDGLFRLISG--DNAPAD 192 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +T++ G +E SN N++ EM +I + ++F Sbjct: 193 AF-----ITLESGAVEGSNVNAVSEMVALISIQRQF 223 >gi|157376216|ref|YP_001474816.1| flagellar hook protein FlgE [Shewanella sediminis HAW-EB3] gi|157318590|gb|ABV37688.1| flagellar basal body FlaE domain protein [Shewanella sediminis HAW-EB3] Length = 454 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 11/126 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L+T A+N++N +++GF+ + +F++V N I G Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADV---YANSIFANSKTGVGGG 58 Query: 64 EYLSK-----EVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLV 115 S GS T LD A+ G +F S + + TR G FKV + LV Sbjct: 59 ATTSHVAQQFHQGSLQFTNNALDMAINGGGFFVTSSGFSSQDLSYTRAGAFKVDSNSYLV 118 Query: 116 SASGKY 121 + G + Sbjct: 119 DSQGNF 124 >gi|297531535|ref|YP_003672810.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297254787|gb|ADI28233.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 276 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 37/263 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-- 70 LA E+R+ + +N++N +T G++ + + ++ + AS + ++ V Sbjct: 13 LAQERRVDWLTNNLANAETPGYKADAAAMRAFPELLMSRLEDQPIPTASRRAIPTQTVIG 72 Query: 71 -----------------GSFISTGTELDFAL-------------EGDAWFALESPRG-II 99 G TG D AL G +FA+ + +G + Sbjct: 73 PLVTGVYMQELIPNFRQGDVKETGLATDIALVDGQVPVDRASRQRGALFFAVANGQGEVR 132 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 TR+G F ++ DG L + G Y VLD +IP E F+V + G I + +G Sbjct: 133 YTRNGHFTLSPDGYLTTQEGWY-VLDANGE--RIPLSSERFSVRDDGTIIDENGTATRLG 189 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + Q V+ N P P + TVK+ FLE SN + M ++ + Sbjct: 190 VAFAANPQTLVKEGNGLFRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYR 249 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + ++ ++S+ +A+ + Sbjct: 250 TFEANQKIVQAYDRSLDKAVNEV 272 >gi|197122908|ref|YP_002134859.1| flagellar basal body rod protein [Anaeromyxobacter sp. K] gi|196172757|gb|ACG73730.1| flagellar basal body rod protein [Anaeromyxobacter sp. K] Length = 235 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 7/165 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + +A ++L VADN++N T GF+ + F + + + VA Sbjct: 1 MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFESFLAPGAAQDKRYAAAVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 +G + G TG LD E + + + G TRDGR + D LVS G Sbjct: 61 TG---IDLRPGPTQRTGNALDVVPEAGMFLTVRTAGGGTAYTRDGRLTLDPDRRLVS-DG 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 + P+L PI +P E V G + +A +GL +D Sbjct: 117 R-PLLSAQGEPIVLPPDLEA-RVDAAGRVWAGDVEVAALGLARLD 159 >gi|146293689|ref|YP_001184113.1| flagellar basal body rod protein FlgF [Shewanella putrefaciens CN-32] gi|145565379|gb|ABP76314.1| flagellar basal-body rod protein FlgF [Shewanella putrefaciens CN-32] gi|319427088|gb|ADV55162.1| flagellar basal-body rod protein FlgF [Shewanella putrefaciens 200] Length = 247 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 43/227 (18%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 L+ +N++N +T GF K+D+ Q S A G+ ++ Sbjct: 17 HELALRGNNLANANTDGF--------------KSDMAQARSMQAFGEGLPTRVFAMIETP 62 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPV 123 G +TG +LD A++GD WFA+++ G TR G G L + G PV Sbjct: 63 SANFRSGPIKTTGRDLDVAIKGDGWFAVQAKDGAEAYTRSGSLSFDATGLLHNDRGN-PV 121 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSG- 176 + A PI +P + + + G IS + +VI +G L V+ + R G Sbjct: 122 MGDAG-PIVLPLPIDKVTISQDGIISVRPQGATAEVIEEVGRLKLVNPGNAQMMRGEDGL 180 Query: 177 ---ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +S N P V V+ G +E SN N + EM +I L ++F Sbjct: 181 FRLVSGNDAPAD----PNVAVESGAVEGSNVNPVDEMVSLIELQRQF 223 >gi|126668558|ref|ZP_01739512.1| flagellar hook protein E [Marinobacter sp. ELB17] gi|126626963|gb|EAZ97606.1| flagellar hook protein E [Marinobacter sp. ELB17] Length = 435 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN GL+ A L +N++N TVGF+ +V+F ++ + + + IS Sbjct: 2 AFNTGLSGLRAAAVDLDVTGNNIANASTVGFKGSRVQFGDLYANGFLSSGNAPVGDGIS- 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 V S K+ + SF G LDFA++GD +F L + + +R G+F DG +V+ Sbjct: 61 VQSVKQSFGQGNVSFTDNG--LDFAIDGDGFFVLNNGGELRYSRAGQFGTDKDGFVVN 116 >gi|17548567|ref|NP_521907.1| flagellar basal-body rod protein FlgF [Ralstonia solanacearum GMI1000] gi|17430815|emb|CAD17497.1| probable flagellar basal-body rod protein flgf [Ralstonia solanacearum GMI1000] Length = 245 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 5/113 (4%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N+ T GF+ F V ++ D SFV + G +TG LD Sbjct: 23 ANNLANSSTTGFKAQIDAFHTV--GVQGDGSPTRSFVMASAIGTDMTPGPIETTGRSLDV 80 Query: 83 ALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 A++G +FA+++ G TR G F+V DG++ + SG+ PVL P+ +P Sbjct: 81 AIDGQGFFAVQTADGGEAYTRAGAFQVGADGTIQTLSGQ-PVLGDGG-PVTLP 131 >gi|299068733|emb|CBJ39972.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum CMR15] Length = 245 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 5/113 (4%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N+ T GF+ F V ++ D SFV + G +TG LD Sbjct: 23 ANNLANSSTTGFKAQIDAFHTV--GVQGDGSPTRSFVMASAIGTDMTPGPIETTGRSLDV 80 Query: 83 ALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 A++G +FA+++ G TR G F+V DG++ + SG+ PVL P+ +P Sbjct: 81 AIDGQGFFAVQTADGGEAYTRAGAFQVGADGTIQTLSGQ-PVLGDGG-PVTLP 131 >gi|270262400|ref|ZP_06190671.1| flagellar basal-body rod protein FlgF [Serratia odorifera 4Rx13] gi|270043084|gb|EFA16177.1| flagellar basal-body rod protein FlgF [Serratia odorifera 4Rx13] Length = 251 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA+ LEQ+ S A+N++N T GFR V + + V + Sbjct: 11 AARQTLEQQ-SVTANNLANASTPGFRAQLSALRAV--PVDGPSLPTRTLVTASTPGADMS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ T LD AL+ D + A+ P G TR+G +++ G L + G+ P++ Sbjct: 68 QGALNYTARPLDVALQQDGFLAVSLPDGGEAYTRNGNIQISSAGQL-TVQGR-PLMGDGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGISPNIP 182 PI++P EI + G IS IA +G L V + V R + G+ P Sbjct: 126 -PIEVPPSAEI-TIAADGTISALNAGDPPNTIAQIGRLKLVKANAREVMRGDDGLFRLTP 183 Query: 183 PT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 T L++ V V G LE SN M M MI ++F + +DENE+ Sbjct: 184 ETQQQRGNQLQNDPLVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVIHSVDENEQ 242 >gi|313681187|ref|YP_004058925.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] gi|313154047|gb|ADR32725.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] Length = 445 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 27/186 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G++ A + L +ADN++NT+TVGFR +F+ + +K+ Sbjct: 1 MTQGYYTGISGIQANQYGLDVIADNLANTNTVGFRGSSTEFASL-------FSEKLVSSG 53 Query: 61 SGKEY-------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 S Y ++ + GS ++T D A+ G+ WF + S + TR G F Sbjct: 54 SAPTYDEIGAGTRLQATTMNTQNGSLLNTDRFNDLAINGNGWFGVVSGQDRYFTRAGNFV 113 Query: 108 VTD----DGSLVSASGKYPVLDMASVPIQIPQK---DEIFNVGEKGEISQKGKVIATMGL 160 + + DG+ S+ G+ + V + D +N K +++ G T L Sbjct: 114 LDEYQKTDGAANSSVGRLTTTEGMYVTGTMLNNFAYDSQYNYSAKSDVTDTGAFKITASL 173 Query: 161 YSVDMS 166 +V ++ Sbjct: 174 NTVPLT 179 >gi|32477362|ref|NP_870356.1| flagellar hook basal body protein flgG [Rhodopirellula baltica SH 1] gi|32447913|emb|CAD77433.1| flagellar hook basal body protein flgG [Rhodopirellula baltica SH 1] gi|327537337|gb|EGF24070.1| flagellar basal-body rod protein FlgG [Rhodopirellula baltica WH47] Length = 268 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 30/234 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQKISF---VASGKE 64 A++ +L +A+N++N +T GF+ + F +EV +++ + V G Sbjct: 15 AMQTKLDVIANNLANINTTGFKKDRANFEDLLYRTEVYPGVQDSTQTPTAVGTQVGLGVR 74 Query: 65 YLSKEV----GSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSAS 118 S + G+ TG +LD A++G +F + P + + TR G + +G LV S Sbjct: 75 VTSTQTDQRQGTLQQTGRDLDVAIQGGGYFRVVDPSSQDTMYTRAGNLDINANGELVMGS 134 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGE--ISQKGKVIAT----MGLYSVDMSQGFVRR 172 + V + PI IP + GE + Q G+ T + L G ++ Sbjct: 135 AQ--VGRLLDPPITIPPDATAVVINSNGEVMVRQPGQTELTNQGQIQLAQFINPDGLLKN 192 Query: 173 ------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 E P P D GV +++G LE SN + E+ +I + F Sbjct: 193 GENLYSETDASGPEQINNPGTDGMGV-LRQGNLEASNVEPVQELIDLITTQRAF 245 >gi|307718428|ref|YP_003873960.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192] gi|306532153|gb|ADN01687.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192] Length = 264 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 45/274 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---------------- 44 M S + + + + TVA+N+SN +T GF+ +V F ++ Sbjct: 1 MMRSLWTAASGMVGQQYHIDTVANNLSNVNTTGFKKNRVDFQDLIYQTVRMAGTPATEVT 60 Query: 45 VGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRD 103 V + + AS K + G+ T D A++G+ +F + G TRD Sbjct: 61 VVPTPTQVGHGVRVAASSKIFTQ---GALQHTDNVSDLAIQGEGFFRVLLYDGTYAYTRD 117 Query: 104 GRFKVTDDGSLVSASGKYPVLDM----------------ASVPIQIPQKDEIFNVGEKGE 147 G FK+ +G LV+++G + ++ V +++P +D+ VG+ Sbjct: 118 GSFKIDSNGQLVTSNGYRLIPEIVLPEGFIADTLAVSEDGRVTVKVPGQDDPVEVGQ--- 174 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 Q + + GL +V + N+ P I P D G + + FLE SN + + Sbjct: 175 -IQLYRFVNPAGLLAV--GDNLYKVTNASGDP-IGGRPGFDGMGKLLHK-FLEMSNVSVV 229 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +MI + Q+ + + + SML N+ Sbjct: 230 NEMVEMI-VAQRAYELNSKAVQTSDSMLGTAVNL 262 >gi|254496887|ref|ZP_05109735.1| flagellar hook protein FlgE [Legionella drancourtii LLAP12] gi|254353906|gb|EET12593.1| flagellar hook protein FlgE [Legionella drancourtii LLAP12] Length = 437 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVASG 62 F+ G++ A L + +N++N+ TVGF+ + F ++ G + V Sbjct: 3 FDTGISGLQAASNNLDVIGNNIANSSTVGFKGSRANFGDIYSFGGYGSSGTTPGGGVMLT 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 S G+ ST LD A+ G+ +F L + +R G+F + +D + ++SG++ Sbjct: 63 SIQQSFASGTMTSTNNTLDLAISGNGFFILNNQGATSYSRAGQFTLNNDNYITNSSGQF 121 >gi|117620743|ref|YP_857343.1| flagellar hook protein FlgE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562150|gb|ABK39098.1| flagellar hook protein FlgE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 444 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 22/153 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +T GF+ + +F++V N Q + VA+ Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVTDDGSLVS 116 G G+ T LD +++G+ +F G+ TR G FK+ ++ +V+ Sbjct: 62 GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSD--GLTNLDRTFTRAGAFKLNENSYMVN 119 Query: 117 ASGKY-------------PVLDMASVPIQIPQK 136 G Y V A+ PIQIP + Sbjct: 120 NQGNYLQGYEINTDGTPKAVSINATKPIQIPDR 152 >gi|217976225|ref|YP_002360372.1| flagellar basal body rod protein FlgG [Methylocella silvestris BL2] gi|217501601|gb|ACK49010.1| flagellar basal-body rod protein FlgG [Methylocella silvestris BL2] Length = 262 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----------NDIDQKI 56 G+AAQ + ++ +A+N++N +T GF+ + +F++++ + N I + Sbjct: 10 GMAAQ---DLNVAVIANNIANINTTGFKRARAEFTDLLYQAERLQGVSSRGQSNTIPEGA 66 Query: 57 SFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + + + G+ +TG +LD+AL G WF + G + TR G F G Sbjct: 67 QLGLGVRTASIRNLHIQGTLTNTGNKLDWALNGRGWFQVTDANGDTVYTRAGAFNTNGTG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 +V++ G Y V VP +V +SQ G V AT+ G + Sbjct: 127 QIVTSDG-YIVSPTMIVPT------NAVDV----TVSQSGMVSATLSGQPAPQQLGQISL 175 Query: 173 EN----SGISP---------NIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 N +G++P +P+ + G TV + +LE SN + + E+ +I Sbjct: 176 ANFANEAGLTPLGNNLYRQTEASGSPIVGVPGDPGFATVSQSYLESSNVDPVKEITDLIA 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRAY 240 >gi|300693339|ref|YP_003749312.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum PSI07] gi|299075376|emb|CBJ34671.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum PSI07] Length = 245 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 5/113 (4%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N+ T GF+ F V ++ D SFV + G +TG LD Sbjct: 23 ANNLANSSTTGFKAQIDAFHTV--GVQGDGSPTRSFVMASAIGTDMTPGPIETTGRSLDV 80 Query: 83 ALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 A++G +FA+++ G TR G F+V DG++ + SG+ PVL P+ +P Sbjct: 81 AIDGQGFFAVQTADGGEAYTRAGAFQVGADGTIQTLSGQ-PVLGDGG-PVTLP 131 >gi|283953936|ref|ZP_06371465.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] gi|283794541|gb|EFC33281.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] Length = 262 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 47/245 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 3 SLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATTLSP 62 Query: 64 EYLSKEVG-------------SFISTGTE-LDFALEGDAWFALESPRGII-LTRDGRFKV 108 + VG + ST T+ LD A+ G+ +F ++ P G I TR+G+F Sbjct: 63 SGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQFTK 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV---- 154 ++G++V++ G + +M IP+ NV G +S Q G+V Sbjct: 123 DNEGNIVNSDGYRLLPEMT-----IPEGAIAINVATDGTVSVMLPGEQQETQIGQVELVQ 177 Query: 155 -IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYE 209 I GL+S+ +N + P+ ++G T++ GF+E SN + E Sbjct: 178 FINPAGLHSMG--------DNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEE 229 Query: 210 MGQMI 214 M +I Sbjct: 230 MTDLI 234 >gi|68164545|gb|AAY87274.1| predicted flagellar proximal rod protein [uncultured bacterium BAC17H8] Length = 251 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 20 STVADNMSNTDTVGFR------TIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 S A N++N G+R ++ F E +++ + V Y S ++G+ Sbjct: 20 SVRAQNLANIAVPGYRRDLGAKSVGTAFLENFDTLQS----RAMAVQDDTNYFSTQLGTL 75 Query: 74 ISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG + D A+ GD +F ++ L+R G +V +G L + + + +LD A PIQ+ Sbjct: 76 SETGADTDIAIRGDGYFIVQGLGEPSLSRRGDLRVNAEGILENGTSQ-KMLDAALQPIQV 134 Query: 134 PQKDEIFNVGEKGEI 148 P + V E G+I Sbjct: 135 PAH-RVIKVSEDGDI 148 >gi|322432975|ref|YP_004210224.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] gi|321165202|gb|ADW70906.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 22/156 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISF 58 G+ AQ + L +A+N++N+ T GF+ ++ FS+++ A + + Sbjct: 11 GMTAQ---QLNLDNIANNLANSSTTGFQQRRLAFSDMLYQNTTSPGSAATQQTTNAAGLQ 67 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 V G S E G F STG LD A+ G +F + P G +R G F + G+ Sbjct: 68 VGLGVRPTSTETIQTQGDFNSTGNPLDLAISGGGFFQVLLPNGQTGYSRSGSFHMDSTGN 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V+A G P+ ++P P I +G G +S Sbjct: 128 VVTADGN-PLQPAITIP---PDATNI-TIGSDGTVS 158 >gi|254175270|ref|ZP_04881931.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 10399] gi|160696315|gb|EDP86285.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 10399] Length = 413 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 18/145 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASG 62 GL+ L + +N++N +TVGF+ +FS+ V A+ N I + +AS Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIG-TMLASV 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 ++ S+ G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Sbjct: 65 QQQFSQ--GTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGMFQRDKNGYIVNSQGLNL 122 Query: 120 -KYP------VLDMASVPIQIPQKD 137 Y + A+VP+Q P + Sbjct: 123 MGYAANANGVINTAATVPLQAPTTN 147 >gi|238762358|ref|ZP_04623329.1| Lateral flagellar rod protein (FlgG-like) [Yersinia kristensenii ATCC 33638] gi|238699343|gb|EEP92089.1| Lateral flagellar rod protein (FlgG-like) [Yersinia kristensenii ATCC 33638] Length = 261 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 49/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 GLAAQ + +++ +++N++N +T GF+ +V F ++ A N I Sbjct: 11 GLAAQ---DAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRSPGSPLNQNTATPNGIQ 67 Query: 54 --QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTD 110 + V + K++ VG+ T E D A+ G +F +E+ G+ TR G + Sbjct: 68 FGSGVKVVGTQKQFT---VGNIKVTKGEFDVAIAGQGFFQIETADGGLAYTRAGNLSINA 124 Query: 111 DGSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQK----------GKV----- 154 DG L +A G M +P I++P +G+ G ++ + G++ Sbjct: 125 DGVLTNAQG------MPLIPQIELPAGANDLAIGKDGTVTARLGGEAEPAELGQITLVNF 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + GL +V G + +E + P E+ G ++ G LE SN + EM MI Sbjct: 179 VNPAGLEAVG---GNMYKETVASGTAVEGVPGEEAFG-QLEHGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKF 220 + + + Sbjct: 235 TVQRAY 240 >gi|27381969|ref|NP_773498.1| flagellar hook protein FlgE [Bradyrhizobium japonicum USDA 110] gi|27355139|dbj|BAC52123.1| flagellar hook protein [Bradyrhizobium japonicum USDA 110] Length = 410 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 23/126 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A +LSTV+DN++N +T G++ +FS ++ GA++ + IS Sbjct: 10 GVSGMSAQSNKLSTVSDNIANVNTTGYKRASTEFSSLILKSGSGNYDSGAVETTVRYAIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSLV 115 + G T + D A++G+ +F + + LTR G F G+LV Sbjct: 70 -----------DAGHTQFTTSTTDLAVQGNGFFVVSNANNTQQYLTRAGSFVPDAQGNLV 118 Query: 116 SASGKY 121 +A+G Y Sbjct: 119 NAAGYY 124 >gi|311992301|gb|ADQ26724.1| flagellar hook protein [Aeromonas hydrophila] Length = 443 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 22/153 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +T GF+ + +F++V N Q + VA+ Sbjct: 1 SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 60 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVTDDGSLVS 116 G G+ T LD +++G+ +F G+ TR G FK+ ++ +V+ Sbjct: 61 GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSD--GLTNLDRTFTRAGAFKLNENSYMVN 118 Query: 117 ASGKY-------------PVLDMASVPIQIPQK 136 G Y V A+ PIQIP + Sbjct: 119 NQGNYLQGYEINTDGTPKAVSINATKPIQIPDR 151 >gi|226944493|ref|YP_002799566.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] gi|226719420|gb|ACO78591.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] Length = 251 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 27/243 (11%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA--SGKEYLSK 68 A+ +L+Q+ + VA N++N T GFR ++ + V + ++S A SG ++ Sbjct: 12 AKQSLDQQ-AVVAHNLANAVTPGFRAQLMEL-QAVPVDGEGLPTRVSVRATTSGVDF--- 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD AL+G+AW A+++ G TR G ++ +G L++ +G +P++ Sbjct: 67 SQGPVTRTGRPLDVALDGNAWLAIQAADGSEAYTRRGDVQIDGNG-LMTVAG-HPLIGDG 124 Query: 128 SVPIQIP-------QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P+ +P D +V E+G+ V+A + L S + G + R G+ Sbjct: 125 G-PLTVPLGSQVSIGADGTVSVVEEGQDPDTSAVVARLKLVSA--APGELERGEDGLF-R 180 Query: 181 IPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 PP PL + G LE SN ++ M MI +++ ID + + Sbjct: 181 APPDDTGVSQPLAVDETARLVTGALEGSNVSATEAMVAMIDNARRYEMQMKAIDSADDNA 240 Query: 235 LEA 237 A Sbjct: 241 QRA 243 >gi|116626495|ref|YP_828651.1| hypothetical protein Acid_7458 [Candidatus Solibacter usitatus Ellin6076] gi|116229657|gb|ABJ88366.1| protein of unknown function DUF1078 domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 421 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 4/124 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFV 59 M TSF+ L+A A + V +N++N +T GF+T V F ++V ++ + + Sbjct: 1 MFTSFSTALSALSATATAVDVVGNNLANLNTPGFKTNVVYFRDLVTQSLGAGLGETQVGF 60 Query: 60 ASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 +G+ ++ G+ S+ LD A++GD +F ++ +G + TR G F+V D G+L + Sbjct: 61 GTGRPLTIRQFTQGAIQSSTGLLDAAVQGDGFFVAKNAQGNTVYTRAGNFQVDDAGNLKT 120 Query: 117 ASGK 120 +G+ Sbjct: 121 NTGE 124 >gi|120598233|ref|YP_962807.1| flagellar basal body rod protein FlgF [Shewanella sp. W3-18-1] gi|120558326|gb|ABM24253.1| flagellar basal-body rod protein FlgF [Shewanella sp. W3-18-1] Length = 247 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 43/225 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ +N++N +T GF K+D+ Q S A G+ ++ Sbjct: 19 LALRGNNLANANTDGF--------------KSDMAQARSMQAFGEGLPTRVFAMIETPSA 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 G +TG +LD A++GD WFA+++ G TR G G L + G PV+ Sbjct: 65 NFRSGPIKTTGRDLDVAIKGDGWFAVQAKDGAEAYTRSGSLSFDATGLLHNDRGN-PVMG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSG--- 176 A PI +P + + + G IS + +VI +G L V+ + R G Sbjct: 124 DAG-PIVLPLPIDKVTISQDGIISVRPQGATAEVIEEVGRLKLVNPGNAQMMRGEDGLFR 182 Query: 177 -ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +S N P V V+ G +E SN N + EM +I L ++F Sbjct: 183 LVSGNDAPAD----PNVAVESGAVEGSNVNPVDEMVSLIELQRQF 223 >gi|307731363|ref|YP_003908587.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1003] gi|307585898|gb|ADN59296.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1003] Length = 502 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 71/136 (52%), Gaps = 22/136 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKND--IDQKISFVASGKEYLSKEVG 71 L + +N++N +TVGF++ +F++ V A+ N I K+S V ++ S+ G Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLSEV---QQQFSQ--G 71 Query: 72 SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------KYP 122 + ST LD A+ G+ +F L + ++ +R+G F++ +G + +A G Sbjct: 72 TITSTNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSG 131 Query: 123 VLDMA-SVPIQIPQKD 137 +++ A +VP+ +P + Sbjct: 132 IINTAQTVPLSVPTAN 147 >gi|330967090|gb|EGH67350.1| flagellar hook protein FlgE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 441 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ +S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFSQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVV 117 Query: 116 SASG 119 +++G Sbjct: 118 NSAG 121 >gi|330875983|gb|EGH10132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 441 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ +S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFSQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVV 117 Query: 116 SASG 119 +++G Sbjct: 118 NSAG 121 >gi|323139654|ref|ZP_08074696.1| flagellar basal-body rod protein FlgG [Methylocystis sp. ATCC 49242] gi|322395086|gb|EFX97645.1| flagellar basal-body rod protein FlgG [Methylocystis sp. ATCC 49242] Length = 262 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 43/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------FVAS 61 G++AQ +Q + +A N++N +T GF+ + +F++++ + D Q +S V Sbjct: 10 GMSAQ---QQNIEVIAHNIANINTTGFKRSRAEFTDLL--YQTDRLQGVSNRGRDATVPQ 64 Query: 62 GKEY----------LSKEVGSFISTGTELDFALEGDAWFA-LESPRGIILTRDGRFKVTD 110 G ++ ++ G +TG D ++ G WF L S + TR G F + Sbjct: 65 GAQFGLGVRAAAVRSLQQQGPLTNTGNMYDLSMNGRGWFQILGSDNETLYTRAGSFSTNN 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATMG 159 +G LV+ G + + I IP +V + G +S Q G++ +A Sbjct: 125 NGQLVTVDGY-----LLTPTITIPNNTLNVSVSQSGIVSAIVAGQTQPQQIGQLTVANFA 179 Query: 160 LYS-VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 S ++ G + RE I P + GV + +G+LE SN + + E+ +I + Sbjct: 180 NESGLEALGGNLFRETYASGQPIVGIPGDPGFGV-INQGYLESSNVDPVKELVSLISAQR 238 Query: 219 KFNSITTLI---DENEKSMLEAIR 239 F + +I DE ++ + IR Sbjct: 239 AFELNSKVIQAADEMAGTISKGIR 262 >gi|323527713|ref|YP_004229866.1| flagellar hook-basal body protein [Burkholderia sp. CCGE1001] gi|323384715|gb|ADX56806.1| flagellar hook-basal body protein [Burkholderia sp. CCGE1001] Length = 502 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 71/136 (52%), Gaps = 22/136 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKND--IDQKISFVASGKEYLSKEVG 71 L + +N++N +TVGF++ +F++ V A+ N I K+S V ++ S+ G Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLSEV---QQQFSQ--G 71 Query: 72 SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------KYP 122 + ST LD A+ G+ +F L + ++ +R+G F++ +G + +A G Sbjct: 72 TITSTNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSG 131 Query: 123 VLDMA-SVPIQIPQKD 137 +++ A +VP+ +P + Sbjct: 132 IINTAQTVPLSVPTAN 147 >gi|197104253|ref|YP_002129630.1| flagellar hook protein FlgE [Phenylobacterium zucineum HLK1] gi|196477673|gb|ACG77201.1| flagellar hook protein FlgE [Phenylobacterium zucineum HLK1] Length = 452 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 28/149 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG----- 62 G++ +A L+ ++DN++N +TV ++ +V F+ VV A K + A G Sbjct: 4 GVSGLVANSSALAAISDNIANVNTVAYKRNQVNFANVVTAQA----VKGKYSAGGVQSVT 59 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALES---------PRGIILTRDGRFKVTDDGS 113 ++++S++ G ++ + D A+ GD +F + + PR TR G F V DG Sbjct: 60 RQFVSQQ-GLIQASNSTTDLAISGDGFFVVANKGLGLTGADPRS--FTRSGAFAVDSDGY 116 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNV 142 +V+ +G Y + P+ Q D FNV Sbjct: 117 MVNDAGLY----LQGWPV---QADGTFNV 138 >gi|330975976|gb|EGH76042.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 442 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKN-DIDQKIS 57 SFNIGL A + L +N++N T GF++ + +F++ + G N ++ + Sbjct: 2 SFNIGLCGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ GS ++TGT LD A+ GD +F + + + TR G F +G +V Sbjct: 62 TAAVSQQF---SQGS-LTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SAS 118 ++S Sbjct: 118 NSS 120 >gi|294140186|ref|YP_003556164.1| flagellar basal-body rod protein FlgF [Shewanella violacea DSS12] gi|293326655|dbj|BAJ01386.1| flagellar basal-body rod protein FlgF [Shewanella violacea DSS12] Length = 247 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 49/228 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L+ A+N++N +T GF K D++Q S A G+ ++ Sbjct: 19 LAVRANNLANANTDGF--------------KADMEQARSMQAFGEGLPTRVFAMTESPSA 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLD 125 G +TG +LD A++GD W A++S G TR G G L + G P++ Sbjct: 65 DFAAGPIKTTGRDLDIAVKGDGWIAVQSADGGEAYTRSGSLSFDTTGLLRNDRGN-PIMG 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSV--DMSQGFVRREN---- 174 S PI +P E ++ + G IS + +VI +G + +Q +R E+ Sbjct: 124 -DSGPIVLPLPIEKVSISQDGIISVRPLGSTAEVIEVVGRIKLVNPGNQNLMRGEDGLFR 182 Query: 175 --SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 SG N P +T++ G +E SN N++ EM +I + ++F Sbjct: 183 LISG--DNAPADAF-----ITIESGAVEGSNVNAVSEMVALIDIQRQF 223 >gi|299538001|ref|ZP_07051287.1| flagellar hook-basal body complex protein [Lysinibacillus fusiformis ZC1] gi|298726583|gb|EFI67172.1| flagellar hook-basal body complex protein [Lysinibacillus fusiformis ZC1] Length = 279 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 23/154 (14%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKI-----------SFVASG 62 L+ +L T+++N++N++T G++T + F+E++ ND + S G Sbjct: 15 LQNKLDTISNNIANSNTTGYKTKEASFNELLYQQFNNDKQDRAERQTPVGIRYGSGAMVG 74 Query: 63 KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTRDGRFKVT--DDGS- 113 + +++ GS +T +LD A + +F + P G + TR G F ++ ++G+ Sbjct: 75 QIKSNEKQGSLQTTNRDLDLAFTKAKQYFNILMPDGENGTETVYTRQGDFYLSPLNNGTV 134 Query: 114 -LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 LV+A G YPV ++A I +P + F V + G Sbjct: 135 MLVTAEG-YPVANVAGQAITLPDTVQKFAVRDGG 167 >gi|148358806|ref|YP_001250013.1| flagellar hook protein FlgE [Legionella pneumophila str. Corby] gi|296106851|ref|YP_003618551.1| flagellar hook protein FlgE [Legionella pneumophila 2300/99 Alcoy] gi|148280579|gb|ABQ54667.1| flagellar hook protein FlgE [Legionella pneumophila str. Corby] gi|295648752|gb|ADG24599.1| flagellar hook protein FlgE [Legionella pneumophila 2300/99 Alcoy] Length = 437 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVASG 62 FN L+ A + L + +N++N+ T+GF+ + +F+++ A + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + S G+ ++ LD A+ G +F L I TR G+FK+ ++ +V+A+ + Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKIYTRAGQFKLNNENYIVNANNQ 120 >gi|83591885|ref|YP_425637.1| hypothetical protein Rru_A0546 [Rhodospirillum rubrum ATCC 11170] gi|83574799|gb|ABC21350.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 661 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 18/125 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA------S 61 G++ A L +ADN++N +TVG++ KV F +V Q++S A Sbjct: 10 GVSGLQAQSSALGAIADNVTNVNTVGYKGTKVNFQTLV-------TQQVSLTAYSPGGVQ 62 Query: 62 GKEYLSKEV-GSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVS 116 K +V G +T + D + G +F + P G +R G FKV DG L++ Sbjct: 63 SKPRTGVDVQGLLQATTSSTDIGISGQGFFVVSGQAIDPTGYAYSRAGSFKVDKDGYLMN 122 Query: 117 ASGKY 121 + G Y Sbjct: 123 SGGYY 127 >gi|332342624|gb|AEE55958.1| flagellar basal-body rod protein FlgG [Escherichia coli UMNK88] Length = 260 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 33/238 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +A+N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G E L + G+ T D A++G +F + P G TRDG F+V +G Sbjct: 68 IGTGVRPVTTERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNG 126 Query: 113 SLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGLYS 162 LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL S Sbjct: 127 QLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLES 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 187 IGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|260752886|ref|YP_003225779.1| hypothetical protein Za10_0647 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552249|gb|ACV75195.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 417 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 16/151 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKISFV 59 +F L A + LS ++N++N+ + GF+ F E+V A +I Q Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPYASAKNIGQGTRLR 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGII-LTRDGRFKVTDDGSLVS 116 A+ +++ S GS +T LD + GD +F ++S G I LTRDG F + ++V+ Sbjct: 62 ATIQDFTS---GSMKTTNRALDMMVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVT 118 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 + G Y + +I+N G+ G Sbjct: 119 SDGHYLQV------YATTNSGDIYNNGQTGS 143 >gi|292492363|ref|YP_003527802.1| flagellar basal body FlaE domain protein [Nitrosococcus halophilus Nc4] gi|291580958|gb|ADE15415.1| flagellar basal body FlaE domain protein [Nitrosococcus halophilus Nc4] Length = 425 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 26/153 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN L+ A L V++N++N +T GF+ + +F+++ G+ K + + Sbjct: 2 SFNTSLSGLNAASSDLDVVSNNIANANTTGFKRSRAEFADIFAVSSFGSPKTAVGSGVLL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSL 114 + +++ + G+ T LD A+ G +FAL SP ++ +R G F + DG + Sbjct: 62 NRAAQQF---DQGNLDFTQNILDLAVSGRGFFAL-SPNLTNNELVYSRAGAFSINKDGYV 117 Query: 115 VSASGK----YPVLDMASV---------PIQIP 134 V+ +G+ YPV +V P+++P Sbjct: 118 VNGAGQFLRTYPVNQDGTVTASSLESSQPVRLP 150 >gi|259417834|ref|ZP_05741753.1| flagellar hook protein FlgE [Silicibacter sp. TrichCH4B] gi|259346740|gb|EEW58554.1| flagellar hook protein FlgE [Silicibacter sp. TrichCH4B] Length = 422 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 11/128 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL+ ++DN++N T G++ + F +V +N V+ Sbjct: 3 ISSSLNAGVAGLAANSTRLAAISDNIANASTAGYKRVVTSFESMV-ISQNGGSYAAGGVS 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES---------PRGIILTRDGRFKVTDD 111 + E S IST D A+ G + + S P ++LT G F+ D+ Sbjct: 62 VNNTRMIDERSSLISTSNATDLAVAGRGFLPVASLAEVDSGGDPT-MLLTTSGSFRTNDE 120 Query: 112 GSLVSASG 119 G L + SG Sbjct: 121 GYLTTTSG 128 >gi|260466619|ref|ZP_05812807.1| flagellar basal-body rod protein FlgG [Mesorhizobium opportunistum WSM2075] gi|259029625|gb|EEW30913.1| flagellar basal-body rod protein FlgG [Mesorhizobium opportunistum WSM2075] Length = 262 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI------SFVASG----- 62 A + L +A+N++N +T G++ + +FS+++ + D Q + S V G Sbjct: 13 AQQTNLEVIANNIANINTTGYKRARAEFSDLLYQV--DRTQGVPNRSNASLVPEGVSIGL 70 Query: 63 --KEYLSKEV---GSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS 116 K + V G STG D AL G WF +E + G + +R G F G LV+ Sbjct: 71 GVKTTAVRNVHTQGELTSTGNSFDMALTGRGWFQIEGADGGTLYSRAGAFNTNATGQLVT 130 Query: 117 ASGKYPVLDMASVPI 131 G V+ +VP+ Sbjct: 131 VDGA-SVIPAINVPV 144 >gi|91776309|ref|YP_546065.1| flagellar hook protein FlgE [Methylobacillus flagellatus KT] gi|91710296|gb|ABE50224.1| protein of unknown function DUF1078-like protein [Methylobacillus flagellatus KT] Length = 410 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-------AIKNDIDQKI 56 +F GL+ A + + + +N++N TVGF+ + +F++V A K I KI Sbjct: 2 AFQQGLSGLNAASKNIEVIGNNVANASTVGFKQSRTEFADVYANSLGGGNASKIGIGTKI 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + + +++ G+ ++ LD A+ G+ +F + I +R+G+F++ DG + + Sbjct: 62 AAIT--QQFTQ---GNISNSQNPLDVAINGNGFFRMSDNGAITYSRNGQFQLDKDGYIQN 116 Query: 117 ASGK 120 A+G+ Sbjct: 117 AAGQ 120 >gi|153952418|ref|YP_001398358.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939864|gb|ABS44605.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. doylei 269.97] Length = 270 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 124/281 (44%), Gaps = 51/281 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-------IKVKFSEVVGA--IKND 51 MQ + + +L + +N++N +T G++ K F E I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENR 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILT 101 FV + +EY +GS +T LD A+ D ++ +++ G + LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDTFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL--DMASVP----IQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL D + P I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-------TVKRGFLEDSNANSMY 208 A + + VD + ++++ + ++DL+ + +++GF + SN N + Sbjct: 180 ARLFVAQVDDIRA-LQKDGDNVY------KIDDLTRIRYLENSNAIRQGFSQGSNVNPVT 232 Query: 209 EM------GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM +M+ + QK +T +D+ + EAI +A+ Sbjct: 233 EMVGLIEANRMVEMYQKV--MTAHMDDLNQ---EAINKLAA 268 >gi|83595982|gb|ABC25342.1| flagellar hook protein [uncultured marine bacterium Ant24C4] Length = 437 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-FV 59 + +S N G+A A RL+T++DN++N+ T G++ F +V I+N + + V Sbjct: 3 ISSSLNAGVAGLSANATRLATISDNIANSSTFGYKRAVTDFQSLV--IENSNSKYTAGGV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---------ILTRDGRFKVTD 110 + L E GS +ST D A+ G + S + +LT G F+ + Sbjct: 61 RTTTTRLIDERGSLVSTTNPTDLAVRGRGLLPVTSEASVQVANGDHPLLLTTTGSFRPDE 120 Query: 111 DGSLVSASG 119 DG L S SG Sbjct: 121 DGYLRSPSG 129 >gi|54294163|ref|YP_126578.1| flagellar hook protein FlgE [Legionella pneumophila str. Lens] gi|53753995|emb|CAH15466.1| Flagellar hook protein FlgE [Legionella pneumophila str. Lens] gi|307609977|emb|CBW99506.1| flagellar hook protein FlgE [Legionella pneumophila 130b] Length = 437 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVASG 62 FN L+ A + L + +N++N+ T+GF+ + +F+++ A + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + S G+ ++ LD A+ G +F L I TR G+FK+ ++ +V+A+ + Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKIYTRAGQFKLNNENYIVNANNQ 120 >gi|332525066|ref|ZP_08401246.1| flagellar basal body and hook protein [Rubrivivax benzoatilyticus JA2] gi|332108355|gb|EGJ09579.1| flagellar basal body and hook protein [Rubrivivax benzoatilyticus JA2] Length = 432 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 13/121 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISF 58 SF GL+ A + L + +N++N +T G + + +FS++ GA N++ ++ Sbjct: 2 SFQQGLSGLNATSKSLDVIGNNIANANTYGAKVSRAEFSDMYATALNGAGVNNVGIGVTL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLV 115 A +++ G+ +TG +D A+ G +F + SP + TR+G+FKV +G +V Sbjct: 62 GAVSQQFTQ---GNISTTGNAMDMAINGAGFFQVTDGVSP--TVYTRNGQFKVDREGYIV 116 Query: 116 S 116 + Sbjct: 117 N 117 >gi|328958276|ref|YP_004375662.1| flagellar basal body rod protein FlgG [Carnobacterium sp. 17-4] gi|328674600|gb|AEB30646.1| flagellar basal body rod protein FlgG [Carnobacterium sp. 17-4] Length = 289 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 54/291 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G+ ++ ++ +++N++N +T F+T +V+F +++ I+ Sbjct: 1 MLKSLYSGVTGMKNIQTKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQAGINAQQ 60 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALE-GDA-WFALESPRGIILTRDGRFKVTDDG 112 V G + S + GS STG LDF +E GD+ +F + TRDG G Sbjct: 61 VGLGVQVGSIDTVMTGGSLQSTGRALDFGIENGDSSFFTVTDGTNTFYTRDGGLYADPSG 120 Query: 113 SLVSASG--------KYPVLDMASV----------PIQIPQ-----------KDEIFNVG 143 +LV++SG P + A+ PI IPQ + + ++V Sbjct: 121 NLVTSSGLQVQGYSQGAPATNDAAFVPGSLGTTMEPINIPQTIPNPDGGDALELQSYSVD 180 Query: 144 EKGEI-----SQKGKVIATMGLYSVDMSQGFVRR--------ENSGISPNIPPTPLEDLS 190 G I K V+ +GL S G + NSG P + P + Sbjct: 181 NDGFIVGSYSGGKSMVLGRVGLTSFSNPDGLQKNGGNLYSASANSG-DP-VAGNPGDAGY 238 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G +V+ GFLE SN + E +MI ++ + + + I ++ +MLE + N+ Sbjct: 239 G-SVRSGFLEMSNVDLANEFTEMIVTSRSYQANSRSITTSD-TMLEELINL 287 >gi|317130722|ref|YP_004097004.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] gi|315475670|gb|ADU32273.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] Length = 279 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 41/264 (15%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKI-----------SFVA 60 ++++L TV +N++N +T G++ V FS+++ N D +I S A Sbjct: 18 MQRKLDTVGNNLANLNTTGYKRRDVSFSDLLFQQVNNQRDAHHEIGRTTPNGIRVGSGSA 77 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR---GIILTRDGRF------KVTDD 111 G+ + E G+ +T ELD AL + +P TRDG F V + Sbjct: 78 VGQTAVRMEQGALRTTERELDIALTEKGYLFELAPAEDGTRRFTRDGAFYFSPNPDVDGE 137 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVIATMGLYSVDMSQG 168 +V+ +G Y VL PI +P E + ++G I G+ +A L V +++ Sbjct: 138 NFIVNQNGDY-VLGSDGNPIAVPGHYESLRITDEGAILVTLDNGESVAVGELQLVQVTKP 196 Query: 169 FVRR---ENSGISPNIPPTP------LEDLSGVTV-KRGFLEDSNANSMYEMGQMIHLTQ 218 + +N + PN+ L + +G V +G LE SN + EM +M+ LTQ Sbjct: 197 QLLTSLGDNMYVFPNLEELGLAFGDVLNEAAGAQVFSQGMLEQSNVDMGREMTEMM-LTQ 255 Query: 219 K---FNSITTLIDENEKSMLEAIR 239 + FNS I + ++ IR Sbjct: 256 RNYQFNSRAISIADEMMGLVNTIR 279 >gi|294140185|ref|YP_003556163.1| flagellar hook protein FlgE [Shewanella violacea DSS12] gi|293326654|dbj|BAJ01385.1| flagellar hook protein FlgE [Shewanella violacea DSS12] Length = 453 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 13/127 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L+T A+N++N +++GF+ + +FS+V N I S A G Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFSDV---YANSIFSN-SKTAVGG 57 Query: 64 EYLSKEV------GSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSL 114 + +V GS T LD A+ G +F S + TR G FKV L Sbjct: 58 GVTTSQVAQQFHQGSMQFTNNALDMAINGGGFFVTSSDLSGKEQSFTRAGAFKVDSSNYL 117 Query: 115 VSASGKY 121 V + G + Sbjct: 118 VDSQGNF 124 >gi|152985192|ref|YP_001349650.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PA7] gi|150960350|gb|ABR82375.1| flagellar hook protein [Pseudomonas aeruginosa PA7] Length = 462 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 20/116 (17%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A L+ +N++N TVGF+ + +F++V A S + SG Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAA---------SVLGSGS 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G+F +T + LD A+ G+ +F + I TR G F Sbjct: 53 NPQGSGVLLSDISQMFKQGNFETTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNT 108 >gi|115523556|ref|YP_780467.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisA53] gi|115517503|gb|ABJ05487.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris BisA53] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 24/164 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------IDQKIS 57 +A E + +++N++N T F+ + F ++ VGA +D +D Sbjct: 12 MAQELNVQVISNNIANMRTTAFKKQRAAFQDLIYDHVKRVGAQASDQGTILPVGVDIGGG 71 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 G + + G+ +TG +LD A+ G+ +F ++ P G TRDG F + G +V+ Sbjct: 72 VKTVGTPRIMTQ-GTLSTTGNDLDMAIRGEGFFKIQMPDGTYTYTRDGSFTTDNTGRIVT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM 158 ++G P+ I IPQ + +G+++ +G AT+ Sbjct: 131 SNGN-PL----QPTITIPQGSSGLTINAQGQVTVIAQGSTTATL 169 >gi|91204389|emb|CAJ70889.1| similar to flagellar hook protein [Candidatus Kuenenia stuttgartiensis] Length = 532 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 14/133 (10%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---------IDQKISFVASGKEYL 66 + L + +N+SN +T G+++ ++ FS+++ K + K+ ++S Sbjct: 18 QSWLDVIGNNLSNINTYGYKSSRLLFSDLISQDKGSGGVNPMQIGMGVKVGSISS---LF 74 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 S+ G+ +T E DFA++GD +F L +R G F LV ++ Y +LD Sbjct: 75 SQ--GTLEATNNEFDFAIQGDGFFVLNGGNKNFFSRVGTFATDASNQLVDSTTGYQILDS 132 Query: 127 ASVPIQIPQKDEI 139 + I IP + Sbjct: 133 SGKTITIPYGSSV 145 >gi|85058013|ref|YP_453715.1| flagellar basal body rod protein FlgG [Sodalis glossinidius str. 'morsitans'] gi|84778533|dbj|BAE73310.1| flagellar basal-body rod protein FlgG [Sodalis glossinidius str. 'morsitans'] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 49/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +++N++N T+GF+ + F +++ GA ++ Sbjct: 11 GLEAQ---QTNMDVISNNIANVSTMGFKRQQAVFEDLLYQTVRQPGAKSSEQTTIPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 + + VA+ + +L G +TG D A+EG + + P G TRDG + Sbjct: 68 LGTGVRPVATTRIHLQ---GGLTNTGNPTDVAIEGSGFLQVLMPDGTNAYTRDGSLQRDQ 124 Query: 111 DGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKG--EISQKGKV-IATM---- 158 G LV++SG YP+ +P + I KD + +V G E + G++ +AT Sbjct: 125 YGQLVTSSG-YPIQPAVMIPNGASNLTI-SKDGLVSVALPGQTEPQEVGQLNLATFINDA 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 GL S+ + + +SG P+E+ G+ +K+ FLE+SN N E+ MI Sbjct: 183 GLQSLGENL-YYETPSSG-------APMENKPGMNGAGALKQQFLENSNVNVAQELITMI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 QAQRAY 240 >gi|306820122|ref|ZP_07453770.1| flagellar hook protein FlgE [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551900|gb|EFM39843.1| flagellar hook protein FlgE [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 474 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 28/141 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S N +++ + R+ + +N++N +TV F+ + F D +++ A Sbjct: 1 MMRSMNSAVSSLKNHQARMDVIGNNIANVNTVAFKAARTTFK--------DTYSQLTRAA 52 Query: 61 SGKE---------------YLSK-----EVGSFISTGTELDFALEGDAWFALESPRGIIL 100 SG LS + G+ +T D ++G+ +F ++ P G Sbjct: 53 SGSSGDRGGINPGQIGLGMNLSSIDNAMDKGTVETTNINTDLYIDGEGFFMVDGPDGRFY 112 Query: 101 TRDGRFKVTDDGSLVSASGKY 121 TRDG F V ++G LV+ +G Y Sbjct: 113 TRDGNFGVDEEGYLVNKNGNY 133 >gi|258592560|emb|CBE68869.1| Flagellar basal-body rod protein flgG (Distal rod protein) [NC10 bacterium 'Dutch sediment'] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 37/261 (14%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISF 58 +A A + L +A+N++N +T GF+ ++ F ++ A +I I Sbjct: 9 VAGMQAQQLNLDNIANNLANVNTTGFKRSRLDFQDLFYQTYRPAGASTASGAEIPVGIQV 68 Query: 59 VASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSL 114 K S+ + G T LD +EGD +F + P G I TR G FK +G + Sbjct: 69 GHGSKPIASQRIYIQGDPQQTENPLDLMIEGDGFFQVLRPDGTIAYTRAGSFKRDANGRV 128 Query: 115 VSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQ--KGKVIATMGLYSVDMSQGFVR 171 V++ G A P + IP + +VG G +S G+ A+ + ++++S+ F+ Sbjct: 129 VTSDG------FALQPEVSIPAQAMTIHVGSDGVVSATIPGQT-ASQQIGTIELSR-FIN 180 Query: 172 R---ENSGISPNIPPT----PLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ G + ++P + P G T+ +GFLE SN + EM +I + + Sbjct: 181 PAGLQSVGRNLSLPTSASGDPTSGAPGTQGLGTIGQGFLELSNVKVVEEMVNLIMSQRAY 240 Query: 221 NSITTLIDENEKSMLEAIRNI 241 + + + ++ ML+ NI Sbjct: 241 EAGSKAVQAADE-MLQVSNNI 260 >gi|241761151|ref|ZP_04759240.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374770|gb|EER64231.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 418 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKISFV 59 +F L A + LS ++N++N+ + GF+ F E+V A +I Q Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPLASAKNIGQGTRLR 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVS 116 A+ +++ S GS +T LD + GD +F ++S I LTRDG F + ++V+ Sbjct: 62 ATIQDFTS---GSMKTTNRALDMMVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVT 118 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 + G Y +Q+ D N+ G+ + Sbjct: 119 SDGHY---------LQVYATDNSGNIYTNGDTA 142 >gi|15022422|dbj|BAB62243.1| flagellar protein [Treponema medium] Length = 280 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 26/137 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T GF+ +V F ++ I Q++S + Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNIANVNTTGFKRGRVNFQDL-------ISQQLSGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 E + KEVG + STG D A++G+ +F L+S T Sbjct: 54 RPNEEVGGVNPKEVGLGVMVASIDTVHTQGALQSTGINTDIAVQGNGFFVLKSGEKSFYT 113 Query: 102 RDGRFKVTDDGSLVSAS 118 R G F V DG++V+ + Sbjct: 114 RAGAFGVDKDGTMVNPA 130 >gi|212634348|ref|YP_002310873.1| flagellar hook protein FlgE [Shewanella piezotolerans WP3] gi|212555832|gb|ACJ28286.1| Flagellar basal body rod protein FlaE [Shewanella piezotolerans WP3] Length = 453 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 18/149 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ + ++ L+T A+N++N +T GF+ + +F++V + N VA+ Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S G TR G FK + +V ++ Sbjct: 62 SQVAQQFHQGSLQFTNNSLDMAINGGGFFVTSSEIGSQDHSFTRAGAFKFDSNNYMVDSA 121 Query: 119 GK----YPV---LDMASV------PIQIP 134 G +PV + SV P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTTEPVQIP 150 >gi|220917700|ref|YP_002493004.1| flagellar basal-body rod protein FlgF [Anaeromyxobacter dehalogenans 2CP-1] gi|219955554|gb|ACL65938.1| flagellar basal-body rod protein FlgF [Anaeromyxobacter dehalogenans 2CP-1] Length = 235 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 7/165 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + +A ++L VADN++N T GF+ + F + + + VA Sbjct: 1 MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFESFLAPGAAQDKRYAAAVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 +G + G TG LD E + + + G TRDGR + D LVS G Sbjct: 61 TG---IDLRPGPTQRTGNALDVVPEAGMFLTVRTAGGGTAYTRDGRLTLDPDRRLVS-DG 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 + P+L PI +P E V G + +A +GL +D Sbjct: 117 R-PLLSPRGEPIVLPPDLEA-RVDAAGRVWAGDVEVAALGLARLD 159 >gi|330892783|gb|EGH25444.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 280 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVCL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|83814111|ref|YP_446742.1| flagellar basal-body rod protein [Salinibacter ruber DSM 13855] gi|83755505|gb|ABC43618.1| flagellar basal-body rod protein [Salinibacter ruber DSM 13855] Length = 241 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 106/229 (46%), Gaps = 17/229 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F AA + + VA+N++N T G++ +V F+E A+ + + S ++ Sbjct: 1 MLPRFQNAAAAMSEMRLQQEQVANNLANASTTGYKKDRV-FTE---ALNERLTKDGSPIS 56 Query: 61 SGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLV 115 + + ++ GS TG LD AL GD F + PRG TR G F V G+L Sbjct: 57 DRRLEQANDLSGGSLKETGNPLDVAL-GDEGFFVTQPRGGGAERYTRAGHFVVGSQGTLR 115 Query: 116 SASGKYPVLDMASVPIQIP-QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 + G+ + + PIQ+P ++ ++ + G I+ + + + + + + + R Sbjct: 116 TPEGREVMGEGG--PIQLPVEQGGDISISKSGRITAGQQQVGALRVATFENPEQLERTSG 173 Query: 175 SGISP-NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + + P E+ V +G +E SN + + E+ MI + ++F + Sbjct: 174 ASFAAGDAQPQAAEN---PVVLQGKVETSNVDPVTELTNMIEIQRQFEA 219 >gi|330943207|gb|EGH45614.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str. 1704B] Length = 368 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKN-DIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + G N + ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ GS ++TGT LD A+ GD +F + + + TR G F +G +V Sbjct: 62 TAAVSQQF---SQGS-LTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SAS 118 ++S Sbjct: 118 NSS 120 >gi|253574271|ref|ZP_04851613.1| flagellar basal body rod protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846748|gb|EES74754.1| flagellar basal body rod protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 300 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/294 (22%), Positives = 119/294 (40%), Gaps = 73/294 (24%) Query: 13 LALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKND--------IDQKISFVAS 61 +A ++R TV N++N +T G++ T+ F E++ ++ D I + ++ V + Sbjct: 13 IAEQRRHDTVTQNIANLNTPGYKSVNTVARSFPEMLISLMGDKQSGNNKQIGKLVTGVFA 72 Query: 62 GKEYLSKEVGSFISTGTELDFAL--------------------------------EGDAW 89 + + G TG DFAL + A+ Sbjct: 73 EESLPAFTQGDLKETGKNTDFALISELSLENPETGGPYAFDASGKFVTEDGEVIYQPQAF 132 Query: 90 FALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ--------KDEIF 140 FA+E G + TRDG F V G L +++G + VLD PI + DE Sbjct: 133 FAVEDNEGNVRYTRDGSFTVNAAGELRTSTG-FRVLDTGGNPIILDAGLSVDTLTSDEAG 191 Query: 141 NVGEKGEISQKGKVI--ATMGLYSVDMSQGFVRREN----------SGISPNIPPTPLED 188 N+ + G ++ T+G+ V+ VR N +G+ +P T Sbjct: 192 NL---TAVDNTGALVDLGTLGITVVEQPYQLVREGNGVFRVADEEAAGVRELVPGT---- 244 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G V++G+LE SN ++ M ++ + + S +I ++S+ +A+ I Sbjct: 245 -DGAVVRQGYLEVSNVDTAQSMVDLLAAQRAYESNQKIIQYYDRSLDKAVNEIG 297 >gi|134095095|ref|YP_001100170.1| basal-body rod protein [Herminiimonas arsenicoxydans] Length = 242 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 39/249 (15%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKEYLSKE--- 69 +++N++N T GF+ + F +++ GA + + S + +G ++ E Sbjct: 4 ISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQTELPSGLQLGTGVRPVATERIH 63 Query: 70 -VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G+ T + A+EGD +F + P G TRDG F+ + G +V++SG +P+ Sbjct: 64 TQGNLQLTSNAKNLAIEGDGFFQVLMPDGTTAYTRDGSFQTDNQGQMVTSSG-FPIQPAI 122 Query: 128 SVP-----IQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDMSQG---FVRR 172 ++P I I +D I +V G + Q I GL MS+G +V Sbjct: 123 TIPENATSITI-SRDGIVSVTVSGTTAATEIGALQLATFINPAGL----MSRGENLYVET 177 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 SG + TP + +G+ +K+ ++E SN N + E+ MI TQ+ I + Sbjct: 178 TASGTANT--NTPGSNGAGL-LKQNYVETSNVNVVEELVSMIQ-TQRAYEINSKAITTSD 233 Query: 233 SMLEAIRNI 241 ML+ + I Sbjct: 234 QMLQRLTQI 242 >gi|330889085|gb|EGH21746.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 441 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFTQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SASG 119 ++ G Sbjct: 118 NSGG 121 >gi|315125985|ref|YP_004067988.1| FlgFL [Pseudoalteromonas sp. SM9913] gi|315014499|gb|ADT67837.1| FlgFL [Pseudoalteromonas sp. SM9913] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 34/218 (15%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK---------- 68 L A+N++N TVGF K D++Q S + G+ + ++ Sbjct: 19 LRVAANNLANVSTVGF--------------KADLEQAQSMMVQGEGFRTRYHAQLTPVTT 64 Query: 69 --EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 G + TG LD AL + + G TR G V DG V+ +G+ D Sbjct: 65 DLSSGPIMDTGRNLDIALSNGGYLEVMDDNGEPAYTRAGNLVVDADG-FVTVNGRRVQGD 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQK---GKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 IQ+P+ +I +G G I+ G VIA + + + + G+ Sbjct: 124 GGD--IQLPEFGDI-EIGSNGMINLTPIGGGVIAEDAQIKLASTDANLIKGADGLLRAND 180 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 PLE +TV+ G LE SN N++ EM + ++++++F Sbjct: 181 LQPLEADETITVRTGALEGSNVNAVAEMIKTMNISRQF 218 >gi|269103190|ref|ZP_06155887.1| flagellar hook protein FlgE [Photobacterium damselae subsp. damselae CIP 102761] gi|268163088|gb|EEZ41584.1| flagellar hook protein FlgE [Photobacterium damselae subsp. damselae CIP 102761] Length = 449 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 12/127 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S NI L+ A ++ L+T ++N++N +T GF+ + +F +V N I G Sbjct: 2 SVNIALSGLGAAQKDLNTTSNNIANANTYGFKESRAEFGDV---YSNSIFSNAKTSTGGG 58 Query: 64 EYLSK-----EVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSL 114 S GS + T LD + G +FA+ P LTR+G F + + L Sbjct: 59 VQTSTVAQQFHEGSSLYTNNPLDLRISGAGFFAVADNKAEPANNSLTRNGAFHLNNQNEL 118 Query: 115 VSASGKY 121 V++ GK+ Sbjct: 119 VNSEGKF 125 >gi|163803170|ref|ZP_02197053.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] gi|159173070|gb|EDP57903.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 31/213 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +V+ E+ G+ D + + V + + G + TG L Sbjct: 23 SNNLSNADTAGFRADMERVRSVELQGS---GFDGR-TMVVTNSAATRFDSGDIMKTGRPL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ G+ + ++E+P G TR G KV G++ S +G +PVL + P+ +P +I Sbjct: 79 DVAIMGEGYLSVETPTGNEAYTRAGNIKVDTFGAM-SING-FPVLG-ENGPLVVPDFQKI 135 Query: 140 FNVGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 EIS++G+V + T+ + Q +++E+ + ++ P Sbjct: 136 -------EISERGRVSVIPPGGGAEVEVGTLKMVKPPFDQ--LQKESDSLLHSLDGAPFP 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + +E SN +++ E+ ++ LT+ F Sbjct: 187 ADETVQLSPEHIEGSNVSAIDELLSVMSLTRNF 219 >gi|317492428|ref|ZP_07950857.1| fagellar hook-basal body protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919767|gb|EFV41097.1| fagellar hook-basal body protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 414 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 18/143 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN ++ A L + +N++N+ TVGF++ V F+++ K + K VAS ++ Sbjct: 3 FNQAVSGLNAAASNLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVK---VASVQQ 59 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG---- 119 + + + + G LD A+ G+ +F ++ G+ +R+G+F D L +A G Sbjct: 60 DFTDGITTTTNRG--LDVAISGNGFFRMQDANGGVYYSRNGQFTKNQDNFLTNAQGVFLT 117 Query: 120 KYPVLDMASV--------PIQIP 134 YP PIQIP Sbjct: 118 GYPAAGSPPTIQQGAQPSPIQIP 140 >gi|330972413|gb|EGH72479.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 442 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKN-DIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + G N + ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ GS ++TGT LD A+ GD +F + + + TR G F +G +V Sbjct: 62 TAAVSQQF---SQGS-LTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SAS 118 ++S Sbjct: 118 NSS 120 >gi|330961197|gb|EGH61457.1| flagellar hook protein FlgE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 582 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +GA N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGGNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E + IS+G LD ++G+ +F + + TR G F Sbjct: 62 ASVQQNFNQGE--TVISSGNPLDMRIQGNGFFVVSDQGALAYTRAGAF 107 >gi|294508678|ref|YP_003572737.1| flagellar basal-body rod protein [Salinibacter ruber M8] gi|294345007|emb|CBH25785.1| flagellar basal-body rod protein [Salinibacter ruber M8] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/249 (22%), Positives = 113/249 (45%), Gaps = 17/249 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F AA + + VA+N++N T G++ +V F+E A+ + + S ++ Sbjct: 20 MLPRFQNAAAAMSEMRLQQEQVANNLANASTTGYKKDRV-FTE---ALNERLTKDGSPIS 75 Query: 61 SGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLV 115 + + ++ GS TG LD AL GD F + PRG TR G F V G+L Sbjct: 76 DRRLEQANDLSGGSLKETGNPLDVAL-GDEGFFVTQPRGGGAERYTRAGHFVVGSQGTLR 134 Query: 116 SASGKYPVLDMASVPIQIP-QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 + G+ + + PIQ+P ++ ++ + G I+ + + + + + + + R Sbjct: 135 TPEGREVMGEGG--PIQLPVEQGGDISISKSGRITAGQQRVGALRVATFENPEQLERTSG 192 Query: 175 SGISP-NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + + P E+ V +G +E SN + + E+ MI + ++F + I + Sbjct: 193 ASFAAGDAQPQAAEN---PVVLQGKVETSNVDPVTELTNMIEIQRQFEAQQKTIQTTDGV 249 Query: 234 MLEAIRNIA 242 + A +++ Sbjct: 250 LGRATQSLG 258 >gi|292669970|ref|ZP_06603396.1| flagellar basal-body rod protein FlgG [Selenomonas noxia ATCC 43541] gi|292648382|gb|EFF66354.1| flagellar basal-body rod protein FlgG [Selenomonas noxia ATCC 43541] Length = 275 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 19/179 (10%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ +TG DF + G+ +F + +P+G TRDG +K+ D +V+ G Y + D ++ Sbjct: 96 GALQTTGNTYDFGISGEGYFVVNTPQGPRYTRDGTWKLDSDRRMVTTDG-YLLADGITIG 154 Query: 131 IQIPQK------DEIFNVGEKGEISQK-------GKVIATMGLYSVDMSQGFVRRENSGI 177 P D + E G+ Q+ + + GL ++ + FV + SG Sbjct: 155 ENAPSDSITISGDGRVSYREAGQTQQQEAGQITLARFVNPAGLTAIGKNL-FVVSDASGE 213 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + I P D +G T+ +G LE SN + EM MI + + S + I ++ SMLE Sbjct: 214 A--IESNPGVDGAG-TLTQGTLEMSNVQIVEEMVNMIVSQRAYESNSKAITTSD-SMLE 268 >gi|209963559|ref|YP_002296474.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] gi|209957025|gb|ACI97661.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] Length = 434 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 21/127 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY-L 66 GLAAQ A + + ++DN+SN+ TVG++ V+FS +V S+ A G + L Sbjct: 13 GLAAQSA---KFAAISDNISNSSTVGYKRSGVQFSTLV----TSASSPGSYSAGGVQADL 65 Query: 67 SKEV---GSFISTGTELDFALEGDAWFAL---------ESPRGIILTRDGRFKVTDDGSL 114 EV G +T + D A+ G +F + E+P +LTR G F+V ++G+L Sbjct: 66 HTEVSRGGIVQATNSATDMAISGRGFFVVSNRSAAVNGEAPS-YMLTRSGAFRVDENGNL 124 Query: 115 VSASGKY 121 + +G + Sbjct: 125 HNTAGYF 131 >gi|291613038|ref|YP_003523195.1| fagellar hook-basal body protein [Sideroxydans lithotrophicus ES-1] gi|291583150|gb|ADE10808.1| fagellar hook-basal body protein [Sideroxydans lithotrophicus ES-1] Length = 405 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 12/122 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------KNDIDQKIS 57 F GL+ A + L + +N++N TVGF+ + +F++V + + I +++ Sbjct: 3 FQQGLSGLNAASKSLDVIGNNVANASTVGFKQSQAQFADVYASSMAGSSGGQAGIGTRVA 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 VA +++ G+ +T LD A+ G +F +++ I +R+G+F++ +G +V++ Sbjct: 63 TVA--QQFTQ---GNITTTNNSLDMAVSGSGFFRMDNNGSITFSRNGQFQLDKNGFIVNS 117 Query: 118 SG 119 G Sbjct: 118 QG 119 >gi|149911702|ref|ZP_01900310.1| flagellar hook protein FlgE [Moritella sp. PE36] gi|149805232|gb|EDM65249.1| flagellar hook protein FlgE [Moritella sp. PE36] Length = 435 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 28/154 (18%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQKISF 58 SFNI L+ A ++ L+T A+N++N +T GF+ + +F +V K + ++ Sbjct: 2 SFNIALSGINAAQKDLNTTANNIANVNTTGFKESRAEFGDVYATSIFSNAKTSVGNGVAT 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWF----ALES-PRGIILTRDGRFKVTDDGS 113 +++ + GS T LD A+ G+ +F LES R TR G FK+ + Sbjct: 62 SHIAQQF---QQGSLNFTENSLDLAINGNGFFVMADGLESMDRN--YTRAGAFKLDANSF 116 Query: 114 LVSASGKY------------PVLDMASV-PIQIP 134 + +++G Y + MAS P+QIP Sbjct: 117 VTNSAGNYLQVYDVNDDGSPKAVSMASTKPLQIP 150 >gi|289612565|emb|CBI60084.1| unnamed protein product [Sordaria macrospora] Length = 159 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 21/146 (14%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFS----EVVGAIKNDIDQKISFVAS----------GKE 64 + +++N++N +T GF+ + F +++ A Q+ + G Sbjct: 1 MRVISNNLANVNTTGFKRDRASFEAMSYQIITAQGAASTQESRYATGLNLGTGVRIQGTA 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPV 123 + + GS +TG LD A+EGD +F ++ P G + TR G F + +G LV+ G Y V Sbjct: 61 SIQTQ-GSLATTGNALDMAMEGDGYFQVQMPGGQLGYTRAGNFTRSAEGLLVTTEG-YQV 118 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS 149 + I +P+ +G G +S Sbjct: 119 MP----GITLPEGATSITIGNDGTVS 140 >gi|323492338|ref|ZP_08097491.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] gi|323313385|gb|EGA66496.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] Length = 398 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G ++ TR G F D + +G Sbjct: 58 QNFDKN-GSVSGTGRAMDLAINGSGFFITKDTSGQLLYTRSGVFGTDKDNYVTGNTG 113 >gi|169826609|ref|YP_001696767.1| flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] gi|168991097|gb|ACA38637.1| Flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] Length = 279 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 42/266 (15%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKND-IDQK-------ISFVAS---G 62 L+ +L T+++N++N+ T GF+ + F+E++ ND +D+ I F + G Sbjct: 15 LQNKLDTISNNIANSSTTGFKAKEATFNELLYQQFNNDKLDRAERQTPVGIRFGSGAMLG 74 Query: 63 KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTRDGRFKVT--DDGS- 113 + +++ GS +T +LD A + +F + P G + TR G F ++ ++G+ Sbjct: 75 QIKSNQKQGSLQTTNRDLDLAFTKAKQYFNILMPNGENGTETVYTRQGDFYLSPLNNGTV 134 Query: 114 -LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIATMGLYSVDMSQGFV 170 LV+A G YPV + A I +P + F+V G E S I L + + + Sbjct: 135 MLVTAEG-YPVANAAGQAITLPDNVQGFSVRNGGILEASYPNGDIIRTDLAVTEFQKPQL 193 Query: 171 RRENSGISPNIPPT----------PLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIH 215 SG +P L +L G + ++ G LE SN N EM ++I Sbjct: 194 MEHVSGSYVGLPDNLAELGFTQAEVLTELVGANRQQIGMQGGTLEMSNVNLSKEMTELIQ 253 Query: 216 LTQ--KFNSITTLIDENEKSMLEAIR 239 + +FN+ T + + ++ IR Sbjct: 254 TQRSYQFNARTVTLADQMLGLINGIR 279 >gi|304404253|ref|ZP_07385915.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] gi|304347231|gb|EFM13063.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] Length = 272 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 38/177 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++ + Q ++ V Sbjct: 1 MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDI-------LSQNVAGVT 53 Query: 61 SGKEYL-----SKEVG---------------SFISTGTELDFALEGDAWFALE-SPRGII 99 + +E +K+VG S ++T D ++GD +FA++ SP + Sbjct: 54 APEEGAKGGVNAKQVGLGVAIAAIDTLHTAGSAMTTNVPTDVRIDGDGFFAVKTSPEQEV 113 Query: 100 --LTRDGRFK-------VTDDGSLVSASGKYP-VLDMASVPIQIPQKDEIFNVGEKG 146 LTR G F VT DG+ V A G P VLD I Q I ++ G Sbjct: 114 PYLTRAGNFYLDASRQLVTADGAFVLAEGGEPIVLDEGVTSFSIAQDGSIISINADG 170 >gi|126697841|ref|YP_001086738.1| flagellar basal body rod protein FlgG [Clostridium difficile 630] gi|255305297|ref|ZP_05349469.1| flagellar basal body rod protein FlgG [Clostridium difficile ATCC 43255] gi|115249278|emb|CAJ67091.1| Flagellar basal body rod protein FlgG [Clostridium difficile] Length = 253 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 103/237 (43%), Gaps = 24/237 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T F A A + +L +++N++N+D+ G++ I +++S++V + N + S+ Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLVDEVLN----RPSYPT 56 Query: 61 SGKE------------YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 +G + + E G+ T ++ + A++G+ +F + G TR+G F Sbjct: 57 NGNDISTGTGAKATAPMRNYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYAYTRNGGFN 116 Query: 108 VTDDGSLVSASGKYPVLDM---ASVPIQIPQKDEI-FNVGEKGEISQKGKVIATMGLYSV 163 V G +V +G +LD+ A D V GE+ K I + LY Sbjct: 117 VDALGKIVDDNGN--ILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQP 174 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +Q F+ E + ++ + V + +G+ E SN + E +I + F Sbjct: 175 IGTQNFI-SEGDSLFVATDAAQIKQVEKVDIVQGYRERSNVSLQEEFVDLIATQRAF 230 >gi|218689031|ref|YP_002397243.1| flagellar basal body rod protein FlgG [Escherichia coli ED1a] gi|218426595|emb|CAR07423.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli ED1a] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVEMSNVNVAEELVNMIQVQRAY 240 >gi|222530130|ref|YP_002574012.1| hypothetical protein Athe_2164 [Caldicellulosiruptor bescii DSM 6725] gi|222456977|gb|ACM61239.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 488 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 21/129 (16%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--- 65 ++A A + R+ + DN++N +TVGF++ +V F+ V ++ + G Sbjct: 9 ISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASGRGGSNPMQ 68 Query: 66 -----------LSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTD 110 ++ GS T D A+EGD +F + ++PR TR G F + Sbjct: 69 IGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPR---FTRAGNFSLDK 125 Query: 111 DGSLVSASG 119 G+LV+A+G Sbjct: 126 MGNLVTATG 134 >gi|82702454|ref|YP_412020.1| flagellar basal body rod protein FlgF [Nitrosospira multiformis ATCC 25196] gi|82410519|gb|ABB74628.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 250 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 16/237 (6%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A+ AL Q + V+ N++N +T G+R ++ V + + + +FV Sbjct: 12 AKHALGQH-AAVSHNLANANTPGYRA-EINALRAVPVFSDTLATR-AFVVDSSVGADFRP 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ +T ELD A++G W A++ G TR+G V+ +G L + G + D + Sbjct: 69 GTVQNTARELDVAIQGAGWIAVQLADGSEAYTRNGDLHVSANGVLQTRDGLNVLGDTGLI 128 Query: 130 PIQIPQKDEIFNVGEKGEI---------SQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 IQ K +G G I S+ +A + V+ + + R + G+ Sbjct: 129 SIQPNAK---VTIGTDGTISTVPAGAGTSEPNLAVAVGRIKLVNPPEAQLVRGSDGLFRL 185 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 E VT+ G LE SN N + M MI L+++F + L+ E + A Sbjct: 186 SGGGEAEADGNVTLSSGALEGSNVNVVEAMVDMISLSRQFETHMKLLQNAEGNAQRA 242 >gi|330893050|gb|EGH25711.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 165 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVCL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|315185552|gb|EFU19321.1| flagellar basal-body rod protein FlgG [Spirochaeta thermophila DSM 6578] Length = 264 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 45/274 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---------------- 44 M S + + + + TVA+N+SN +T GF+ +V F ++ Sbjct: 1 MMRSLWTAASGMVGQQYHIDTVANNLSNVNTTGFKKNRVDFQDLIYQTVRMAGTPATEVT 60 Query: 45 VGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRD 103 V + + AS K + G+ T D A++G+ +F + G TRD Sbjct: 61 VVPTPTQVGHGVRVAASSKIFTQ---GALQHTDNVSDLAIQGEGFFRVLLYDGTYAYTRD 117 Query: 104 GRFKVTDDGSLVSASGKYPVLDM----------------ASVPIQIPQKDEIFNVGEKGE 147 G FK+ +G LV+++G + ++ V +++P +D+ VG+ Sbjct: 118 GSFKIDSNGQLVTSNGYRLIPEIVLPEGFIADTLSVSEDGRVTVKVPGQDDPVEVGQ--- 174 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 Q + + GL +V + N+ P I P D G + + FLE SN + + Sbjct: 175 -IQIYRFVNPSGLLAV--GDNLYKVTNASGDP-IGGRPGFDGMGKLLHK-FLEMSNVSVV 229 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +MI + Q+ + + + SML N+ Sbjct: 230 NEMVEMI-VAQRAYELNSKAVQTSDSMLGTAVNL 262 >gi|160939652|ref|ZP_02087000.1| hypothetical protein CLOBOL_04544 [Clostridium bolteae ATCC BAA-613] gi|158437443|gb|EDP15207.1| hypothetical protein CLOBOL_04544 [Clostridium bolteae ATCC BAA-613] Length = 246 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF---RTIKVKFSEVVGAIKND----ID 53 M + F + L ++ L+ A+N++N T G+ R +K F + + N + Sbjct: 1 MFSGFYTAASGMLMNQRSLNMAANNIANVKTSGYKPKRLVKTTFDQQLVREMNGRTEGLG 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 Q + +E + G TG D A+ GD +F ++ G LTR+G F D+G+ Sbjct: 61 QGSTISVGTREMTTHGQGPIEDTGKTYDLAINGDGFFVIQGENGQYLTRNGHFTRDDEGN 120 Query: 114 LV 115 L+ Sbjct: 121 LM 122 >gi|304310787|ref|YP_003810385.1| Flagellar basal body FlaE [gamma proteobacterium HdN1] gi|301796520|emb|CBL44728.1| Flagellar basal body FlaE [gamma proteobacterium HdN1] Length = 447 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 24/152 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISF 58 SFNI ++ A + L ++N++N T GF+ + +F ++ G+ K I + Sbjct: 2 SFNIAISGLKAAQSDLEVTSNNIANVATTGFKKSRAEFGDIYATGAFGSTKTAIGSGVLL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLV 115 A +++ G+ T LDF + G+ +F + G I TR G F V DG++V Sbjct: 62 QAVSQQF---NQGNMNFTQNTLDFGVSGEGFFVMSPNIGSSERIYTRAGAFGVNADGNVV 118 Query: 116 SASGK----YPVLD---------MASVPIQIP 134 ++S + +PV + +++P+++P Sbjct: 119 NSSDQLLQVFPVNEDGTVTSTALSSTIPLKLP 150 >gi|157160605|ref|YP_001457923.1| flagellar basal body rod protein FlgG [Escherichia coli HS] gi|170020526|ref|YP_001725480.1| flagellar basal body rod protein FlgG [Escherichia coli ATCC 8739] gi|312971215|ref|ZP_07785393.1| flagellar basal-body rod protein FlgG [Escherichia coli 1827-70] gi|157066285|gb|ABV05540.1| flagellar basal-body rod protein FlgG [Escherichia coli HS] gi|169755454|gb|ACA78153.1| flagellar basal-body rod protein FlgG [Escherichia coli ATCC 8739] gi|310336417|gb|EFQ01603.1| flagellar basal-body rod protein FlgG [Escherichia coli 1827-70] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T G++ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGYKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|46203395|ref|ZP_00051590.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 293 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 28/141 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKI 56 G++ A R+STVA+N+ N +T G++ +FS ++ GA++ + + I Sbjct: 10 GVSGMNAQSNRISTVAENIQNANTTGYKRTSAEFSSLLLDSGDVGTYNSGAVETTLRRSI 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKV-TDDGSL 114 E G ST ++ D A++G+ +F + G LTR G F V G+L Sbjct: 70 G-----------ERGPISSTNSDKDLAIQGNGFFVVRDESGAPFLTRAGNFVVDGKSGNL 118 Query: 115 VSASG----KYPVLDMASVPI 131 V+A G Y + + A P+ Sbjct: 119 VNAGGFTLLGYSLANGAPNPV 139 >gi|90577345|ref|ZP_01233156.1| putative flagellar basal-body rod protein [Vibrio angustum S14] gi|90440431|gb|EAS65611.1| putative flagellar basal-body rod protein [Vibrio angustum S14] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 31/213 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +VK + GA D + + V + + G I TG L Sbjct: 23 SNNLSNADTAGFRADMERVKSIPLQGA---GFDGR-TMVVTNSAATRFDAGDVIKTGRAL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ GD +F +++ G TR G +V + G ++ +G +P++ + +P+ + Sbjct: 79 DIAINGDGFFTVQTIAGNEAYTRTGNIRVDEQG-MMRVNG-FPLMSEGEALV-LPEYQNV 135 Query: 140 FNVGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 EIS KG V + + L + D +Q +++++ G+ + Sbjct: 136 -------EISDKGVVSIVPLGGGAELEVGQLKLVNPDFNQ--LQKQSDGLLHPVNDQVFA 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + G LE SN +++ E+ ++ LT+ F Sbjct: 187 QDPSVAMTAGHLEGSNVSAINELVSVMSLTRNF 219 >gi|90021855|ref|YP_527682.1| ribonuclease III [Saccharophagus degradans 2-40] gi|89951455|gb|ABD81470.1| flagellar basal body FlaE [Saccharophagus degradans 2-40] Length = 804 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 8/121 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 F+ L+ A LS +N++N T GF+ + +F +V +GA N I + Sbjct: 3 FDTALSGIRAASSDLSVTGNNIANASTTGFKASRAEFGDVYATSVLGAGVNAIGSGVQVQ 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + VG T ELD A+ G+ +F + + TR G F + D+G +V+ +G Sbjct: 63 EVAQRFSQGNVGF---TENELDLAINGNGFFVVSQQGETLYTRAGSFGLDDEGYVVNNTG 119 Query: 120 K 120 Sbjct: 120 A 120 >gi|223040682|ref|ZP_03610951.1| flagellar basal-body rod protein FlgG [Campylobacter rectus RM3267] gi|222878046|gb|EEF13158.1| flagellar basal-body rod protein FlgG [Campylobacter rectus RM3267] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 34/229 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG- 71 +A + ++ + N++N +T+G++ + +F++++ + S A+ K EVG Sbjct: 13 IAQQTQIDVTSHNIANVNTIGYKKNRAEFADLMYQVMEYAGTATS--ATTKSPTGIEVGL 70 Query: 72 --------------SFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 F T LD + G+ +F ++ P G TR+G FK+ +G++V+ Sbjct: 71 GARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQLPDGTTAYTRNGAFKLNSEGTVVN 130 Query: 117 ASGKYPVLDMASVPIQIPQ----KDEIFNVGEKG--EISQKGKV-----IATMGLYSVDM 165 + G Y + ++P Q D +V + G E++Q G++ I GL+S M Sbjct: 131 SDG-YVLQPQMTIPADATQISVGTDGTVSVLQPGNTEMAQVGRIELANFINPAGLHS--M 187 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S + L+ L T+++GF+E SN + EM +I Sbjct: 188 GDNLYLPTGSSGEVVVGTAGLDGLG--TIRQGFVEMSNVQLVEEMTDLI 234 >gi|291528559|emb|CBK94145.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1] Length = 247 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 15/141 (10%) Query: 37 IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---- 92 IK+K + G KN + V G+ Y + GSF T D A+ G +FA+ Sbjct: 31 IKIKDTSNYGLHKN-LGSMTYGVHLGETYTDWDEGSFKVTDNPTDLAIGGKGFFAVAFTD 89 Query: 93 -ESPRGIILTRDGRFKVTDDGSLVSASGKYPVL--------DMASVPIQIPQKDEIFNVG 143 + TRDG FKV DG LV+A G + VL D +E F+V Sbjct: 90 KSGQTSVKYTRDGAFKVNADGYLVTADGDH-VLNATGALSGDGGEANWVKVDPNEKFSVN 148 Query: 144 EKGEISQKGKVIATMGLYSVD 164 G I+Q +++ T+G+ VD Sbjct: 149 SLGYITQNNQLVGTIGVVDVD 169 >gi|289627763|ref|ZP_06460717.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651647|ref|ZP_06482990.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 2250] gi|330866422|gb|EGH01131.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 441 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFTQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SASG 119 ++ G Sbjct: 118 NSGG 121 >gi|332088746|gb|EGI93858.1| flagellar basal-body rod protein FlgG [Shigella boydii 5216-82] Length = 260 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRSVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G+++ SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVDTSNVNVAEELVNMIQVQRAY 240 >gi|221311596|ref|ZP_03593443.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] gi|221315923|ref|ZP_03597728.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320836|ref|ZP_03602130.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. JH642] gi|1763701|emb|CAB05941.1| flhP [Bacillus subtilis subsp. subtilis str. 168] Length = 268 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 33/256 (12%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE---------- 64 L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA ++ Sbjct: 15 LQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVAKARKTPPLAPLVGA 74 Query: 65 ----YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS------ 113 L + GS T +LD A + + G TRDG VT + Sbjct: 75 MMSSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDGALYVTPSAANANQLQ 134 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIA--TMGLYSVDMSQGFV 170 LV+ +G YPVLD + I + + + G ++ G + +G+ V+ Q Sbjct: 135 LVTGNG-YPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNLGVVQVNNPQELK 193 Query: 171 RRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI--HLTQKFNSI 223 N+ S + E+L+G + +++G LE SN + +M +I + + NS Sbjct: 194 SEGNNLFSID-NAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMTDLITSQRSYQLNSR 252 Query: 224 TTLIDENEKSMLEAIR 239 T + + ++ ++R Sbjct: 253 TITMGDQMLGLINSVR 268 >gi|325921024|ref|ZP_08182906.1| flagellar hook protein FlgE [Xanthomonas gardneri ATCC 19865] gi|325548506|gb|EGD19478.1| flagellar hook protein FlgE [Xanthomonas gardneri ATCC 19865] Length = 407 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G+ TG LD A+ G+ +FA+ S + TR G F+ +G +++ Sbjct: 62 SNVAQQF---SQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQ 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|288574697|ref|ZP_06393054.1| flagellar basal-body rod protein FlgG [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570438|gb|EFC91995.1| flagellar basal-body rod protein FlgG [Dethiosulfovibrio peptidovorans DSM 11002] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 119/265 (44%), Gaps = 39/265 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---S 57 M S G +A + L ++N++N +TVG++ ++ F++++ I + + + Sbjct: 1 MIRSLWTGATGMVAQQTNLDVTSNNLANVNTVGYKKVRTNFADLLYQINREPGSPVEGGT 60 Query: 58 FVASGKEY-LSKEV---------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V +G + L V GS+ T L+ A+EG+A+F + P G I + +G + Sbjct: 61 TVPTGIQVGLGARVNGTSRITTPGSYEVTDAPLNVAIEGNAYFQVVLPNGDIAYSANGEW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE--ISQKG------------ 152 + DG +V++ G +L+ A I IP+ + G+ +SQ G Sbjct: 121 QRDGDGQIVTSDGY--LLEPA---IVIPEDGTDITISSTGQVYVSQPGDDEAQEIGQIEL 175 Query: 153 -KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 + + GL ++ + R + P I P +D T+++G LE SN + EM Sbjct: 176 VRFVNPAGLRAI--GRNLFRETAASGDPQI-GNPGDD-GFPTLQQGILERSNVQVVEEMV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLE 236 +I + + + + I ++ +LE Sbjct: 232 NLIVAQRAYEANSKTIQTADR-LLE 255 >gi|157376215|ref|YP_001474815.1| flagellar basal body rod protein FlgF [Shewanella sediminis HAW-EB3] gi|157318589|gb|ABV37687.1| flagellar basal-body rod protein FlgF [Shewanella sediminis HAW-EB3] Length = 247 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 21/214 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF++ + + + A + ++ F + + G +TG Sbjct: 19 LAVRANNLANANTDGFKSDMAQ-ARSMQAFGEGLPTRV-FAMTESPSANFASGPIKTTGR 76 Query: 79 ELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A++GD W A+++ G TR G G L + G PV+ S PI +P Sbjct: 77 DLDVAVKGDGWIAVQAGDGGEAYTRSGSLSFDTTGLLRNDRGN-PVMG-DSGPIVLPLPI 134 Query: 138 EIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSGI-----SPNIPPTPL 186 E + + G IS + +VI +G + V+ + R + G+ N P P Sbjct: 135 EKIEIAQDGIISVRPQGATAEVIEEVGRIKLVNPGNQNMMRGSDGLFRLMSGENAPADPF 194 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V V+ G +E SN N++ EM +I + ++F Sbjct: 195 -----VGVESGAVEGSNVNAVDEMVNLIDIQRQF 223 >gi|320353949|ref|YP_004195288.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122451|gb|ADW17997.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 423 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 9/110 (8%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGKEYLSKEV----G 71 Q ++ +N++N+ TVGF+T FS+++ A I + S V G + + + G Sbjct: 19 QAMTVTGNNIANSSTVGFKTSSTVFSDLLSANIAS--SSGNSQVGRGSQVQTVQTSFSQG 76 Query: 72 SFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASG 119 F ST + D A+EG +F + P + TR+G F DDG LV+A G Sbjct: 77 GFESTESATDIAIEGSGFFIVGDPLSDTSLYTRNGNFSFDDDGYLVTADG 126 >gi|298487854|ref|ZP_07005894.1| Flagellar basal-body rod protein flgF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157579|gb|EFH98659.1| Flagellar basal-body rod protein flgF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 258 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 22/148 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ ++ S Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVM--------PSRAYAMSE 60 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKY 121 + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 61 RPGTDFSAGAMVETGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG-L 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEIS 149 PV+ PI +P + +I +G G IS Sbjct: 120 PVMGNGG-PIAVPPQQQI-EIGADGTIS 145 >gi|209695760|ref|YP_002263690.1| flagellar basal body rod protein FlgG [Aliivibrio salmonicida LFI1238] gi|208009713|emb|CAQ80017.1| flagellar basal-body rod protein FlgG (distal rod protein) [Aliivibrio salmonicida LFI1238] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + ++T+++N++N TVGF+ + F ++ N + + Sbjct: 11 GLDAQ---QTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNTELPTGLM 67 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + ++ + G+ +T +D +EG +F + P G + +R+G+F + +G+ Sbjct: 68 LGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQITMPDGNLGYSRNGQFTLNSEGA 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V+ YP+ I +P+ VG GE+S Sbjct: 128 MVTTGSGYPL----EPEIVVPEDAINVTVGTDGEVS 159 >gi|268316347|ref|YP_003290066.1| hypothetical protein Rmar_0780 [Rhodothermus marinus DSM 4252] gi|262333881|gb|ACY47678.1| protein of unknown function DUF1078 domain protein [Rhodothermus marinus DSM 4252] Length = 415 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 11/130 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M S G++ + + R+ +++N++N +T F+ + F+E++G + + Sbjct: 1 MIRSLRTGVSGLKSHQVRMDVISNNIANVNTTAFKRGRAAFNELLGQTLLGVGRTAGGRG 60 Query: 57 ---SFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 S+V G S +V G+ +TG D + GD +F + I LTR G F + Sbjct: 61 INPSYVGLGVSVGSIDVNFAQGALENTGVATDLGINGDGFFVVRGGDRIYLTRAGNFTIN 120 Query: 110 DDGSLVSASG 119 G LV+ SG Sbjct: 121 RFGELVTNSG 130 >gi|28869140|ref|NP_791759.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|213967582|ref|ZP_03395730.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|301385713|ref|ZP_07234131.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato Max13] gi|302060075|ref|ZP_07251616.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato K40] gi|28852380|gb|AAO55454.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|213927883|gb|EEB61430.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|331017026|gb|EGH97082.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 441 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ +S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFSQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVV 117 Query: 116 SASG 119 ++ G Sbjct: 118 NSGG 121 >gi|312135845|ref|YP_004003183.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] gi|311775896|gb|ADQ05383.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] Length = 489 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 25/131 (19%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------------KNDID 53 ++A A + R+ + DN++N +TVGF++ +V F+ V ++ N + Sbjct: 9 ISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVVKSASAPDTASGRGGSNPMQ 68 Query: 54 QKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKV 108 + VAS +++ GS T D A+EGD +F + ++PR TR G F + Sbjct: 69 IGLGVSVASADMNMTR--GSLQRTDNPTDLAIEGDGFFVVGGDGKAPR---YTRAGNFSL 123 Query: 109 TDDGSLVSASG 119 G+LV+A+G Sbjct: 124 DRMGNLVTATG 134 >gi|255322391|ref|ZP_05363537.1| flagellar basal-body rod protein FlgG [Campylobacter showae RM3277] gi|255300764|gb|EET80035.1| flagellar basal-body rod protein FlgG [Campylobacter showae RM3277] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 34/229 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG- 71 +A + ++ + N++N +T+G++ + +F++++ + S A+ K EVG Sbjct: 13 IAQQTQIDVTSHNIANVNTIGYKKNRAEFADLMYQVMEYAGTATS--ATTKSPTGIEVGL 70 Query: 72 --------------SFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 F T LD + G+ +F ++ P G TR+G FK+ +G++V+ Sbjct: 71 GARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQLPDGTTAYTRNGAFKLDSEGTIVN 130 Query: 117 ASGKYPVLDMASVPIQIPQ----KDEIFNVGEKG--EISQKGKV-----IATMGLYSVDM 165 + G Y + ++P Q D +V + G E++Q G++ I GL+S M Sbjct: 131 SDG-YVLQPQMTIPADATQVSVGTDGTVSVLQPGNTEMTQVGRIELANFINPAGLHS--M 187 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S + L+ L T+++GF+E SN + EM +I Sbjct: 188 GDNLYLPTGSSGEVVVGTAGLDGLG--TIRQGFVEMSNVQLVEEMTDLI 234 >gi|56421867|ref|YP_149185.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426] gi|56381709|dbj|BAD77617.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426] Length = 276 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/263 (22%), Positives = 105/263 (39%), Gaps = 37/263 (14%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-- 70 LA E+R+ + +N++N +T G++ + + ++ + AS + ++ V Sbjct: 13 LAQERRVDWLTNNLANAETPGYKADAAAMRAFPELLMSRLEDQPIPTASRRAIPTQTVIG 72 Query: 71 -----------------GSFISTGTELDFAL-------------EGDAWFALESPRG-II 99 G TG D AL G +FA+ + +G + Sbjct: 73 PLVTGVYMQELIPNFRQGDVKETGLATDIALVDGQVPVDRASGQRGALFFAVANGQGEVR 132 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 TR+G F ++ DG L + G Y VLD +IP E F V + G I + +G Sbjct: 133 YTRNGHFTLSPDGYLTTQEGWY-VLDANGE--RIPLSSERFAVRDDGTIIDENGTATRLG 189 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + Q V+ N P P + TVK+ FLE SN + M ++ + Sbjct: 190 VAFAANPQTLVKEGNGLFRSTTGPLPQAPGNVTYTVKQRFLERSNVDIERTMTDLLAAYR 249 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + ++ ++S+ +A+ + Sbjct: 250 AFEANQKIVQAYDRSLDKAVNEV 272 >gi|153831673|ref|ZP_01984340.1| flagellar hook protein FlgE [Vibrio harveyi HY01] gi|269960116|ref|ZP_06174492.1| Flagellar hook protein flgE [Vibrio harveyi 1DA3] gi|148872183|gb|EDL71000.1| flagellar hook protein FlgE [Vibrio harveyi HY01] gi|269835087|gb|EEZ89170.1| Flagellar hook protein flgE [Vibrio harveyi 1DA3] Length = 399 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + K GS TG +D A+ G +F + G ++ TR G F TD + V+A+ Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDHMGQMLYTRAGVFG-TDKNNFVTAN 111 >gi|21231397|ref|NP_637314.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768550|ref|YP_243312.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. 8004] gi|188991641|ref|YP_001903651.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. B100] gi|21113063|gb|AAM41238.1| flagellar biosynthesis, hook protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573882|gb|AAY49292.1| flagellar biosynthesis, hook protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733401|emb|CAP51602.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 407 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G+ TG LD A+ G+ +FA+ S + TR G F+ +G +++ Sbjct: 62 SNVAQQF---SQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQ 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|312621577|ref|YP_004023190.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202044|gb|ADQ45371.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] Length = 488 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 21/129 (16%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--- 65 ++A A + R+ + DN++N +TVGF++ +V F+ V ++ + G Sbjct: 9 ISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASGRGGSNPMQ 68 Query: 66 -----------LSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTD 110 ++ GS T D A+EGD +F + ++PR TR G F + Sbjct: 69 IGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPR---FTRAGNFSLDK 125 Query: 111 DGSLVSASG 119 G+LV+A+G Sbjct: 126 MGNLVTATG 134 >gi|302134834|ref|ZP_07260824.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 441 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ +S Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFSQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVV 117 Query: 116 SASG 119 ++ G Sbjct: 118 NSGG 121 >gi|167623361|ref|YP_001673655.1| flagellar hook protein FlgE [Shewanella halifaxensis HAW-EB4] gi|167353383|gb|ABZ75996.1| flagellar basal body FlaE domain protein [Shewanella halifaxensis HAW-EB4] Length = 453 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 18/149 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ + ++ L+T A+N++N +T GF+ + +F++V + N VA+ Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S G TR G FK + +V ++ Sbjct: 62 SQVAQQFHQGSMAFTNNSLDMAINGGGFFVTSSEVGSQDHSYTRAGAFKFDSNNYIVDSA 121 Query: 119 GK----YPV---LDMASV------PIQIP 134 G +PV + SV P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTTKPVQIP 150 >gi|156976141|ref|YP_001447047.1| flagellar hook protein FlgE [Vibrio harveyi ATCC BAA-1116] gi|156527735|gb|ABU72820.1| hypothetical protein VIBHAR_04912 [Vibrio harveyi ATCC BAA-1116] Length = 399 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + K GS TG +D A+ G +F + G ++ TR G F TD + V+A+ Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDHMGQMLYTRAGVFG-TDKNNFVTAN 111 >gi|163803169|ref|ZP_02197052.1| flagellar hook protein [Vibrio sp. AND4] gi|159173069|gb|EDP57902.1| flagellar hook protein [Vibrio sp. AND4] Length = 399 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ A+ N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFA----AVYNGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + K GS TG +D A+ G +F + G ++ TR G F TD + V+A+ Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDNMGQMLYTRAGVFG-TDKNNFVTAN 111 >gi|292487940|ref|YP_003530815.1| flagellar basal-body rod protein FlgF [Erwinia amylovora CFBP1430] gi|292899159|ref|YP_003538528.1| flagellar basal-body rod protein FlgF [Erwinia amylovora ATCC 49946] gi|291199007|emb|CBJ46118.1| flagellar basal-body rod protein FlgF (proximal rod protein) [Erwinia amylovora ATCC 49946] gi|291553362|emb|CBA20407.1| Flagellar basal-body rod protein flgF [Erwinia amylovora CFBP1430] gi|312172061|emb|CBX80318.1| Flagellar basal-body rod protein flgF [Erwinia amylovora ATCC BAA-2158] Length = 251 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 27/241 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA L+Q+ T A N++N T GFR ++ + V + + + V + Sbjct: 11 AASQTLDQQAVT-ASNLANASTPGFRA-QLNAARAVPVEGLSLPTR-TLVTASTPGADMS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ T LD A++GD W A+++ G TR+G +V+ G L S G + D Sbjct: 68 QGALDYTERALDVAMQGDGWLAVQTADGSEAYTRNGNMQVSPTGQL-SVQGNAVMGDGG- 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQ--------------KGKVIATMGLYSVDMSQGFVRREN 174 PI IPQ +I + G I+ K K++ +G G R Sbjct: 126 -PIAIPQGAQI-TIAADGSITALNPGDAPNATVQLGKLKLVKAVGNELTRGDDGMFRVSA 183 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENE 231 S + PL+ + V G LE SN + M MI ++F + + +DENE Sbjct: 184 SAQAQRGATLPLDPT--MKVMPGVLEGSNVKATQTMVDMIANARRFEMQMKVISSVDENE 241 Query: 232 K 232 + Sbjct: 242 Q 242 >gi|121607559|ref|YP_995366.1| flagellar basal-body rod protein FlgG [Verminephrobacter eiseniae EF01-2] gi|121552199|gb|ABM56348.1| flagellar basal-body rod protein FlgG [Verminephrobacter eiseniae EF01-2] Length = 260 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 73/258 (28%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQ------ 54 G++AQ + +L +A N++N T G++ F ++ VGA + +Q Sbjct: 11 GMSAQ---QTQLDVIAHNLANVSTTGYKRSNAMFEDLIYQNLRQVGANSTEQNQLPTGLQ 67 Query: 55 ---KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + VA+ + ++ GS + LD A+ G+ +F + P G + TRDG F+V Sbjct: 68 LGLGVRTVATSRCFVQ---GSLQESRNNLDVAINGNGFFQVMLPDGSLGYTRDGSFQVDA 124 Query: 111 DGSLVSASGKYPV---LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 G LV+A+G PV + +A+ I + IS +G V A M Sbjct: 125 QGRLVTANG-LPVANGITIAANAISV-------------SISAEGAVSAIM--------P 162 Query: 168 GFVRRE---NSGISPNIPPTPLEDL---------------SGV-------TVKRGFLEDS 202 G V+ + N ++ I P LE + G+ +K+GFLE S Sbjct: 163 GSVQPQPLGNLAMASFINPAGLEPIGQNLFKESAASGQPQQGIPGSNGLGVIKQGFLEAS 222 Query: 203 NANSMYEMGQMIHLTQKF 220 N N + E+ MI + + Sbjct: 223 NINIVEELVTMIQTQRAY 240 >gi|298487856|ref|ZP_07005896.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157581|gb|EFH98661.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 586 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|297530598|ref|YP_003671873.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297253850|gb|ADI27296.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 288 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 119/287 (41%), Gaps = 52/287 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------------GAI 48 M S G+ A + +L + +N++N +T GF+ + F +++ GA Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAG 60 Query: 49 KNDIDQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFAL-ESPRGIIL--- 100 + + K V G + + + GS +TG LD A+ GD +F L E G ++ Sbjct: 61 RGGTNPKQ--VGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFILGELNNGNLINPL 118 Query: 101 -TRDGRFKVTDDGSLVSASGKYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQ- 150 TR G F + +G +V+A G Y V IQIP + ++G G ++ Sbjct: 119 FTRAGNFYLDKEGYIVNADGLYLVGEGYQNGAFTGKRARIQIPTDAKSVSIGADGVVNYV 178 Query: 151 ----KGKVIATMGLYSVDMSQG--------FVRRENSG--ISPN-----IPPTPLEDLSG 191 +V + L + G F NSG I+PN I P E +G Sbjct: 179 DAVGNLQVAGRIRLAKFPNNDGLEKVGGNLFRETANSGTIINPNNQNEWIAYPPQESGAG 238 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V G LE SN + E +MI + F + T +I +++ + E + Sbjct: 239 SIVS-GALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELV 284 >gi|289679029|ref|ZP_06499919.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 279 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKN-DIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + G N ++ + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ GS ++TGT LD A+ GD +F + + + TR G F +G +V Sbjct: 62 TAAVSQQF---SQGS-LTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SAS 118 ++S Sbjct: 118 NSS 120 >gi|328958263|ref|YP_004375649.1| flagellar basal-body rod protein FlgG [Carnobacterium sp. 17-4] gi|328674587|gb|AEB30633.1| flagellar basal-body rod protein FlgG [Carnobacterium sp. 17-4] Length = 240 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 19/150 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA------------- 60 A++ ++ V+++++N +T G+++ + F+E+ + ND++ + +++ Sbjct: 3 AIQNQMDAVSNDIANINTTGYKSKNISFNEL---LLNDLNGEADYLSDTVQDAGINRGSK 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 SG + GS IS + A+ G+ +F + G LTRDG F V D S+ + +G Sbjct: 60 SGVTSTNFTQGSLISDPNDYHLAIAGEGFFGVIGENGERYLTRDGAFHVNGDKSITNDNG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 + Q P+ D ++ E GE++ Sbjct: 120 DTLEIQTTIPTNQWPEGD--VSIAENGEVT 147 >gi|302338304|ref|YP_003803510.1| flagellar basal-body rod protein FlgG [Spirochaeta smaragdinae DSM 11293] gi|301635489|gb|ADK80916.1| flagellar basal-body rod protein FlgG [Spirochaeta smaragdinae DSM 11293] Length = 264 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 44/229 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKF-------SEVVGAIKND---------IDQKISFVASG 62 + T+++N+SN +T GF+ + F S V G + + + A+ Sbjct: 19 IDTISNNLSNVNTTGFKKNRADFEDLLYQTSRVAGTPATELTTVPTGVQVGHGVKVAATQ 78 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKY 121 K + G+ +TG D A++GD +F + G +RDG FK+ +G LV+++G Sbjct: 79 KMFTQ---GALQNTGNVTDLAIQGDGFFRVLLIDGSYGYSRDGSFKIDSNGQLVNSNGHR 135 Query: 122 PVLDM----------------ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 + ++ + +++ D+ VG+ + + + GL ++ Sbjct: 136 LIPEVVLPENFERDSLTISQDGRITVKVAGNDDPVQVGQL----ELYRFVNPAGLSAIGQ 191 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + F SG + IP P D G TV+R FLE SN + + EM MI Sbjct: 192 NN-FKITNASGDA--IPGRPGFDGMGQTVQR-FLEMSNVSVVQEMVNMI 236 >gi|224534494|ref|ZP_03675070.1| flagellar hook-basal body complex protein [Borrelia spielmanii A14S] gi|224514171|gb|EEF84489.1| flagellar hook-basal body complex protein [Borrelia spielmanii A14S] Length = 282 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A ++L V++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERRKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +TG LD AL +F +++ G TR+G F + Sbjct: 69 PIVGKLGTGVEENEIYTIFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ +G +PVL Sbjct: 129 KEGILVTKNG-FPVL 142 >gi|91792664|ref|YP_562315.1| flagellar hook protein FlgE [Shewanella denitrificans OS217] gi|91714666|gb|ABE54592.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 455 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 24/133 (18%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V S ++GK Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYAN---------SIFSNGK 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFA----LESPRGIILTRDGRFKV 108 + V GS T LD A+ G +F +++ + +R G FKV Sbjct: 53 TAVGGGVTTTQVAQQFSQGSLQFTSNALDLAISGGGFFVTSANIDTSQDQSFSRAGAFKV 112 Query: 109 TDDGSLVSASGKY 121 + +V ++G + Sbjct: 113 DSNNYMVDSAGNF 125 >gi|332533173|ref|ZP_08409042.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas haloplanktis ANT/505] gi|332037455|gb|EGI73909.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas haloplanktis ANT/505] Length = 262 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 27/159 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + +S +++N++N TVG++ + F +++ G D + Sbjct: 11 GLDAQ---QTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDTEMPSGLM 67 Query: 59 -------VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 VA+ KE+ G+ ++T LD+ + G+ +F + P G I +R+G+F Sbjct: 68 LGAGAKVVANQKEFTQ---GNMLTTENSLDWMISGEGFFEVLQPDGNIAYSRNGQFTTDG 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 DG +V++ Y + + +P + V + GE+S Sbjct: 125 DGRIVTSGAGYVI----QPEMNVPDDAQSITVSQDGEVS 159 >gi|289651646|ref|ZP_06482989.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 2250] Length = 586 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|302872562|ref|YP_003841198.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] gi|302575421|gb|ADL43212.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] Length = 489 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 21/129 (16%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--- 65 ++A A + R+ + DN++N +TVGF++ +V F+ V ++ + G Sbjct: 9 ISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASGRGGSNPMQ 68 Query: 66 -----------LSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTD 110 ++ GS T D A+EGD +F + ++PR TR G F + Sbjct: 69 IGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPR---FTRAGNFSLDK 125 Query: 111 DGSLVSASG 119 G+LV+A+G Sbjct: 126 MGNLVTATG 134 >gi|289627764|ref|ZP_06460718.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866423|gb|EGH01132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 586 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|149203100|ref|ZP_01880071.1| flagellar hook protein FlgE, putative [Roseovarius sp. TM1035] gi|149143646|gb|EDM31682.1| flagellar hook protein FlgE, putative [Roseovarius sp. TM1035] Length = 433 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N +A A RL+T++DN++N+ T G+R ++ F VV A + V Sbjct: 3 ISSSLNASVAGLNANATRLATISDNIANSSTFGYRRVEADFESVVIAGRGG-SYAAGGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE----------SPRGIILTRDGRFKVTD 110 +G + L + G+ +S+ D A+ + + PR ++LT G F+ Sbjct: 62 AGTQRLIDQGGAIVSSSNPTDLAVRDRGFLPVARVTDLVVGNGDPR-MLLTTTGSFRADP 120 Query: 111 DGSLVSASG 119 G LV+ SG Sbjct: 121 QGRLVTESG 129 >gi|157961171|ref|YP_001501205.1| flagellar hook protein FlgE [Shewanella pealeana ATCC 700345] gi|157846171|gb|ABV86670.1| flagellar basal body FlaE domain protein [Shewanella pealeana ATCC 700345] Length = 453 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 18/149 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ + ++ L+T A+N++N +T GF+ + +F++V + N VA+ Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S G TR G FK + +V ++ Sbjct: 62 SQVAQQFHQGSMQFTNNSLDMAINGGGFFVTSSEVGSQDHSFTRAGAFKFDSNNYIVDSA 121 Query: 119 GK----YPV---LDMASV------PIQIP 134 G +PV + SV P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTTKPVQIP 150 >gi|332187904|ref|ZP_08389637.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. S17] gi|332012065|gb|EGI54137.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. S17] Length = 262 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 39/262 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKN-------DID 53 GL AQ + R+ +++N++N +T GF+ + F + GA + ++ Sbjct: 12 GLDAQ---DMRMRVISNNLANVNTTGFKRDRAAFETLAYQTITAPGAASSTESKYATGLN 68 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 G ++ + G+ +T LD AL+G+ +F ++ P G + TR G F + +G Sbjct: 69 LGTGVRIQGTARINTQ-GAMQTTNNSLDMALDGEGFFQVQMPGGTLGYTRAGNFSRSAEG 127 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV-IATMGLY 161 LV++ G Y V+ I +P+ +G G +S + G++ IAT Sbjct: 128 LLVTSEG-YQVMP----GITVPEGATQITIGTDGTVSATIQGQTAPAEIGQIQIATFPNP 182 Query: 162 SVDMSQG--FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + S+G ++ + + N+ LE +++G LE SN N + E+ MI + Sbjct: 183 AGLQSKGDNYLTETAASGAVNMGVAGLEGRG--QIRQGMLEGSNVNVVEELVDMIETQRA 240 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + +I ++ + A +N+ Sbjct: 241 YEVNSKMIKSTDEMLQYANQNL 262 >gi|330986469|gb|EGH84572.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 586 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|320325094|gb|EFW81163.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. B076] Length = 586 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|312792656|ref|YP_004025579.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179796|gb|ADQ39966.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 494 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 21/129 (16%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--- 65 ++A A + R+ + DN++N +TVGF++ +V F+ V ++ + G Sbjct: 9 ISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASGRGGSNPMQ 68 Query: 66 -----------LSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTD 110 ++ GS T D A+EGD +F + ++PR TR G F + Sbjct: 69 IGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPR---FTRAGNFSLDK 125 Query: 111 DGSLVSASG 119 G+LV+A+G Sbjct: 126 MGNLVTATG 134 >gi|149675698|dbj|BAF64728.1| flagellar hook protein [Shewanella livingstonensis] Length = 459 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVASG 62 S NI L+ A ++ L+T A+N++N +T+GF+ + +F++V +I ++ + A+ Sbjct: 2 SLNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYADSIFSNSKTAVGGGATT 61 Query: 63 KEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 + + GS T LD A+ G +F S G TR G FKV +V ++ Sbjct: 62 TQVAQQFHQGSLQFTSNSLDMAISGGGFFVTSSELGSQDQSYTRAGAFKVDSSNYMVDSA 121 Query: 119 GKY 121 G + Sbjct: 122 GNF 124 >gi|71734109|ref|YP_275562.1| flagellar basal-body protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554662|gb|AAZ33873.1| flagellar basal-body protein, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 586 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|54297182|ref|YP_123551.1| flagellar hook protein FlgE [Legionella pneumophila str. Paris] gi|53750967|emb|CAH12378.1| Flagellar hook protein FlgE [Legionella pneumophila str. Paris] Length = 437 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVASG 62 FN L+ A + L + +N++N+ T+GF+ + +F+++ A + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + S G+ ++ LD A+ G +F L + TR G+FK+ ++ +V+A+ + Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKVYTRAGQFKLNNENYIVNANNQ 120 >gi|103488388|ref|YP_617949.1| flagellar basal-body rod FlgF [Sphingopyxis alaskensis RB2256] gi|98978465|gb|ABF54616.1| Flagellar basal-body rod FlgF [Sphingopyxis alaskensis RB2256] Length = 247 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 16/140 (11%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV--GSFIS 75 R + +A+N++N T GFR + ++ + + +D + + +E L ++ G+ S Sbjct: 18 RQTAIANNLANAQTPGFRA-DMASAQSLWLDGSGLDAR---AMASEEVLGADMKAGTVTS 73 Query: 76 TGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG +LD A++GDA +++ G TR G +V+ G L + G +PV P+ IP Sbjct: 74 TGRDLDIAMQGDALLVVQAKNGEEAYTRRGDLQVSPSGLLTTGDG-HPV-QGGQGPVTIP 131 Query: 135 QKDEIFNVGEKGEISQKGKV 154 D I I Q+G+V Sbjct: 132 PADAI-------SIDQQGRV 144 >gi|320329353|gb|EFW85346.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] gi|330880525|gb|EGH14674.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] Length = 586 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|312876506|ref|ZP_07736489.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796717|gb|EFR13063.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] Length = 494 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 21/129 (16%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--- 65 ++A A + R+ + DN++N +TVGF++ +V F+ V ++ + G Sbjct: 9 ISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASGRGGSNPMQ 68 Query: 66 -----------LSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTD 110 ++ GS T D A+EGD +F + ++PR TR G F + Sbjct: 69 IGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGKAPR---FTRAGNFSLDK 125 Query: 111 DGSLVSASG 119 G+LV+A+G Sbjct: 126 MGNLVTATG 134 >gi|312126828|ref|YP_003991702.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] gi|311776847|gb|ADQ06333.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] Length = 486 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 21/129 (16%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--- 65 ++A A + R+ + DN++N +TVGF++ +V F+ V ++ + G Sbjct: 9 ISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASGRGGSNPMQ 68 Query: 66 -----------LSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTD 110 ++ GS T D A+EGD +F + +PR TR G F + Sbjct: 69 IGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGRAPR---FTRAGNFSLDK 125 Query: 111 DGSLVSASG 119 G+LV+A+G Sbjct: 126 MGNLVTATG 134 >gi|257484948|ref|ZP_05638989.1| flagellar basal-body protein, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011043|gb|EGH91099.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 586 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSASQLGSGRNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E S ++G LD ++G+ +F + + TR G F Sbjct: 62 ASMQQNFNQGE--SMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAF 107 >gi|257457611|ref|ZP_05622778.1| flagellar hook protein FlgE [Treponema vincentii ATCC 35580] gi|257444997|gb|EEV20073.1| flagellar hook protein FlgE [Treponema vincentii ATCC 35580] Length = 463 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T GF+ +V F ++ I Q++S + Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNIANVNTTGFKRGRVNFQDL-------ISQQLSGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 E + KEVG + STG D A++G+ +F L+S T Sbjct: 54 RPTEEVGGVNPKEVGLGMMVASIDTVHTQGALQSTGINTDIAVQGNGFFVLKSGEKSFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V DG++V+ Sbjct: 114 RAGAFGVDRDGTMVN 128 >gi|163789629|ref|ZP_02184067.1| flagellar hook-basal body complex protein [Carnobacterium sp. AT7] gi|159875161|gb|EDP69227.1| flagellar hook-basal body complex protein [Carnobacterium sp. AT7] Length = 252 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMA-- 127 G +T + D A++GD +F +E+ G TR+G F V D G LV+ G Y VL + Sbjct: 83 GGLKATASTTDVAIQGDGFFTVEAANGETSYTRNGNFNVNDAGELVTQEG-YRVLGVTAN 141 Query: 128 --SVPIQIPQKDEIFNVGEKGEISQKG 152 + PIQ+ D F + +G I+ G Sbjct: 142 GQAAPIQVDGAD--FTIDARGTIAGTG 166 >gi|11386808|sp|P57423|FLGF_BUCAI RecName: Full=Flagellar basal-body rod protein flgF gi|25403600|pir||F84969 flagellar basal-body rod protein flgF [imported] - Buchnera sp. (strain APS) gi|10039012|dbj|BAB13046.1| flagellar basal-body rod protein flgF [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 244 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 22/226 (9%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--DIDQKISFVASGKEYL 66 +AA LE++ S +++N++N T GF+ K F+ +KN + D+KI+ KEY Sbjct: 2 IAANQLLEKQ-SIISNNLANISTTGFKE-KFIFAIQNHNVKNLYNSDKKIT-----KEYY 54 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK----- 120 + G TG LD ++ D W ++ G T++G K+ L + Sbjct: 55 NLSPGILRYTGRNLDLFIKDDGWLTVKDTNGQEAYTKNGHLKINSKRKLTIQDNEVIGNN 114 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--IATMGLYSVDMSQG----FVRREN 174 ++ ++ ++I I +V K + + K+ + + L S D+ Q F ++N Sbjct: 115 CNIIIPKNIILKILSNGVITSVKNKHKHIVETKIGSLKLVQLPSQDLIQNENGLFYLKKN 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + I+ T ++ + V+ G LE+SN N+ M +MI ++F Sbjct: 175 NEINKKHTNT-IKHSKKIRVQSGMLEESNVNASKNMIEMISNARQF 219 >gi|251789170|ref|YP_003003891.1| flagellar basal-body rod protein FlgG [Dickeya zeae Ech1591] gi|247537791|gb|ACT06412.1| flagellar basal-body rod protein FlgG [Dickeya zeae Ech1591] Length = 260 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 44/264 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +++N++N T GF+ + F +++ GA ++ Sbjct: 11 GLNAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + VA+ + + GSF TG D A++G +F + P G TRDG F+ Sbjct: 68 LGTGVRPVATERIHTQ---GSFSETGNVKDLAIKGAGFFQVLMPDGTTAYTRDGSFQQDS 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIAT-MGLYSVDM 165 +G LV++SG PV I IP VG G ++Q+G+ +G ++ M Sbjct: 125 NGQLVTSSGFQVQPV-------ITIPANSSNLTVGRDGVVTVTQQGQAAPVQIGQLNLAM 177 Query: 166 SQGFVRRENSG-------ISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLT 217 EN G S P L+G + + F+E SN N E+ MI T Sbjct: 178 FINEAGLENLGENLYAETASSGAPTQSTPGLNGAGLIYQKFVETSNVNVAEELVSMIQ-T 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 Q+ I + + ML+ + + Sbjct: 237 QRAYEINSKAISSTDQMLQKLTQL 260 >gi|255767784|ref|NP_391520.2| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] gi|254763418|sp|P39753|FLHP_BACSU RecName: Full=Flagellar hook-basal body complex protein flhP gi|225185412|emb|CAB15656.2| putative flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] Length = 269 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 112/257 (43%), Gaps = 34/257 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE---------- 64 L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA ++ Sbjct: 15 LQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVAKARKTPPGLRLGVG 74 Query: 65 -----YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS----- 113 L + GS T +LD A + + G TRDG VT + Sbjct: 75 AMMSSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDGALYVTPSAANANQL 134 Query: 114 -LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIA--TMGLYSVDMSQGF 169 LV+ +G YPVLD + I + + + G ++ G + +G+ V+ Q Sbjct: 135 QLVTGNG-YPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNLGVVQVNNPQEL 193 Query: 170 VRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI--HLTQKFNS 222 N+ S + E+L+G + +++G LE SN + +M +I + + NS Sbjct: 194 KSEGNNLFSID-NAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMTDLITSQRSYQLNS 252 Query: 223 ITTLIDENEKSMLEAIR 239 T + + ++ ++R Sbjct: 253 RTITMGDQMLGLINSVR 269 >gi|296282278|ref|ZP_06860276.1| flagellar basal-body rod protein FlgF [Citromicrobium bathyomarinum JL354] Length = 246 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 38/241 (15%) Query: 18 RLSTVADNMSNTDTVGFRT--IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 R +A NM+NTDT+GFR I+ + + G +++ V +G + EV I Sbjct: 18 RQRAIASNMANTDTLGFRAELIEQRAMTIEGHPNEARSMQVARV-TGADMTGGEV---IE 73 Query: 76 TGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG +LD A+ + A+++ G TR G ++ G LV+ G +PVL + PI +P Sbjct: 74 TGRDLDLAIATKSLMAVQADDGTEAYTRRGDLSISATGLLVTGDG-HPVLG-DTGPITVP 131 Query: 135 QKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS------QGFVRRENSGISPN 180 I ++ E G +++ + + L S + S G R E GI Sbjct: 132 PGGRI-SISEDGTVTRSDPDAPEAPPAEVGRIKLASWEGSPIAKGLDGLFRVEGGGI--- 187 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNAN------SMYEMGQMIHLTQKFNSITTLIDENEKSM 234 PL++ + V G LE SN +M E ++ + K S +DE+ + Sbjct: 188 ---LPLDEEA--RVHSGALEQSNVKPTEVLVAMIEEQRLFAMRSKLVSTARQLDESGAQL 242 Query: 235 L 235 + Sbjct: 243 M 243 >gi|169831903|ref|YP_001717885.1| hypothetical protein Daud_1757 [Candidatus Desulforudis audaxviator MP104C] gi|169638747|gb|ACA60253.1| protein of unknown function DUF1078 domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 310 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 17/138 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISF- 58 M S G++ + R+ +A+N++N +T F+ +V F E++ I+ I Sbjct: 1 MIRSLTSGVSGLRNHQVRMDVIANNIANVNTTAFKAGRVNFQEILSQNIRGTSASTIGVD 60 Query: 59 ------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFAL--ESPRGII---LTRD 103 + G S ++ G+ +T LD A++G+ +F L S GII TRD Sbjct: 61 SINPAQIGLGMSVQSIDILFGQGALTTTYRVLDMAIDGNGFFRLGKYSDEGIIEYYYTRD 120 Query: 104 GRFKVTDDGSLVSASGKY 121 G F V +DG LVS+ G + Sbjct: 121 GAFYVDNDGYLVSSGGLH 138 >gi|330986468|gb|EGH84571.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 441 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFSQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SASG 119 ++ G Sbjct: 118 NSGG 121 >gi|90411005|ref|ZP_01219019.1| flagellar hook protein [Photobacterium profundum 3TCK] gi|90328218|gb|EAS44529.1| flagellar hook protein [Photobacterium profundum 3TCK] Length = 435 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 12/126 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQKISFV 59 FNI L+ A ++ L+T ++N++N +T GF+ + +F +V + K + Sbjct: 3 FNISLSGIGASQKDLNTTSNNIANANTYGFKESRAEFGDVYSSSIFSNAKTTTGGGVQTS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLV 115 +++ GS I T +D + G +FA+ P+ LTR+G F + D +V Sbjct: 63 VVAQQF---HEGSSIYTNNPMDLRISGSGFFAVADDKLQPQNNNLTRNGAFHLNKDNQVV 119 Query: 116 SASGKY 121 ++ G++ Sbjct: 120 NSEGQF 125 >gi|91776311|ref|YP_546067.1| flagellar basal-body rod FlgG [Methylobacillus flagellatus KT] gi|91710298|gb|ABE50226.1| Flagellar basal-body rod FlgG [Methylobacillus flagellatus KT] Length = 261 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 107/261 (40%), Gaps = 37/261 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + ++ +A+N++N T GF+ + F +++ GA + Q S + Sbjct: 11 GLDAQ---QMQMDVIANNLANVSTNGFKKTRAVFEDLLYQNIRQPGAQSSQQTQLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 +G ++ E G+ TG D A+ G+ +F + P G TRDG F++ + G Sbjct: 68 LGTGVRPVATERIHIQGNLQQTGNNKDVAISGEGFFQVLLPDGSTAYTRDGAFQLDNQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDMS 166 LV+ASG I +P VG G +S I T L + Sbjct: 128 LVTASGF-----TVQPAIIVPPNALSLTVGRDGTVSVVLPDNPNNAVQIGTFQLATFINP 182 Query: 167 QGFVRR------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G R E + P P + +G+ V + +LE SN N E+ MI TQ+ Sbjct: 183 AGLQSRGENLYIETAASGPANINQPGLNGTGLLVHQ-YLETSNVNVAEELVSMIQ-TQRA 240 Query: 221 NSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 241 YEINSKAISTSDQMLQRLSQL 261 >gi|28952051|ref|NP_240160.2| flagellar basal body rod protein FlgF [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681700|ref|YP_002468086.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682255|ref|YP_002468639.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471396|ref|ZP_05635395.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621988|gb|ACL30144.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624543|gb|ACL30698.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086650|gb|ADP66731.1| flagellar basal body rod protein FlgF [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087236|gb|ADP67316.1| flagellar basal body rod protein FlgF [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087755|gb|ADP67834.1| flagellar basal body rod protein FlgF [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 252 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 22/226 (9%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--DIDQKISFVASGKEYL 66 +AA LE++ S +++N++N T GF+ K F+ +KN + D+KI+ KEY Sbjct: 10 IAANQLLEKQ-SIISNNLANISTTGFKE-KFIFAIQNHNVKNLYNSDKKIT-----KEYY 62 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK----- 120 + G TG LD ++ D W ++ G T++G K+ L + Sbjct: 63 NLSPGILRYTGRNLDLFIKDDGWLTVKDTNGQEAYTKNGHLKINSKRKLTIQDNEVIGNN 122 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--IATMGLYSVDMSQG----FVRREN 174 ++ ++ ++I I +V K + + K+ + + L S D+ Q F ++N Sbjct: 123 CNIIIPKNIILKILSNGVITSVKNKHKHIVETKIGSLKLVQLPSQDLIQNENGLFYLKKN 182 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + I+ T ++ + V+ G LE+SN N+ M +MI ++F Sbjct: 183 NEINKKHTNT-IKHSKKIRVQSGMLEESNVNASKNMIEMISNARQF 227 >gi|15606898|ref|NP_214279.1| flagellar hook protein FlgE [Aquifex aeolicus VF5] gi|6225343|sp|O67711|FLGE_AQUAE RecName: Full=Flagellar hook protein flgE gi|2984140|gb|AAC07675.1| flagellar hook protein FlgE [Aquifex aeolicus VF5] Length = 482 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 11/114 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASGKEYLSKE---- 69 L +DN++N +TVGF+ + F + VVG K + +G S + Sbjct: 19 LDVTSDNLANANTVGFKKSRPIFQDMVSQVVVGLNTTTGTVKTTTFGAGAVVDSTQKVWT 78 Query: 70 VGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFKVTDDGSLVSASGKY 121 +GSF T D A+EG A F L TRDGRF++ +G L++ +G Y Sbjct: 79 IGSFKQTEITTDLAIEGKALFILRDVLTNQTYYTRDGRFRINREGYLINPNGLY 132 >gi|254505064|ref|ZP_05117215.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] gi|222441135|gb|EEE47814.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] Length = 262 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/260 (22%), Positives = 112/260 (43%), Gaps = 35/260 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDI 52 G++AQ + + VA+N++N +T F+ + +FS+++ + Sbjct: 10 GMSAQ---QLNVEVVANNIANMNTTSFKRAQAEFSDLLYQAERLQGVPNRGGEDPVPEGA 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + +G L + G +TG + D AL+G WF + P + TR G F D Sbjct: 67 QLGLGVKTAGIRKLHMQ-GPLTNTGNQFDIALDGRGWFEITGPDDESLYTRAGSFNKNAD 125 Query: 112 GSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G LV+ G Y V VP + I + ++++ + GEI + ++ ++ D+ Sbjct: 126 GRLVTIDG-YTVEPAIIVPEETIEVVINETGQVYSKID-GEIQPREIGQLSLANFANDVG 183 Query: 167 ----QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF-- 220 G + RE + P + GV V++G+LE SN + + E+ +I + + Sbjct: 184 LEPVGGNLFRETPASGAPVAGVPGDPGFGV-VRQGYLESSNVDPVKEITALISAQRGYEM 242 Query: 221 -NSITTLIDENEKSMLEAIR 239 + + DE ++ IR Sbjct: 243 NSKVMKAADEMANTVTNGIR 262 >gi|197285508|ref|YP_002151380.1| flagellar basal-body rod protein [Proteus mirabilis HI4320] gi|227355999|ref|ZP_03840391.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis ATCC 29906] gi|194682995|emb|CAR43442.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis HI4320] gi|227163987|gb|EEI48889.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis ATCC 29906] Length = 260 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 117/269 (43%), Gaps = 54/269 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +++N++N T GF+ + F +++ GA+ ++ S + Sbjct: 11 GLDAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMTSEQTNAPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G E L + G+ T D A++G +F ++ P G TRDG F++ +G Sbjct: 68 IGTGVRPVATERLHSQ-GNLAQTNGTRDVAIKGQGFFHVQLPDGTDAYTRDGSFQMDQNG 126 Query: 113 SLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS----------QKGKVIATM--- 158 LV++SG VP I +P+ + VG G +S Q G++ T Sbjct: 127 QLVTSSG------FQIVPAIILPETAKKVMVGRDGIVSVEIEGSPAPQQVGQLTLTTFIN 180 Query: 159 --GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQ 212 GL SV + ++ +SG P E+ G+ + +G++E SN N E+ Sbjct: 181 DSGLESVGENL-YLETASSG-------APTENAPGINGAGLLYQGYVETSNVNVAEELVN 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI TQ+ I + ML+ + + Sbjct: 233 MIQ-TQRAYEINSKAISTSDQMLQKLTQL 260 >gi|120554033|ref|YP_958384.1| hypothetical protein Maqu_1105 [Marinobacter aquaeolei VT8] gi|120323882|gb|ABM18197.1| protein of unknown function DUF1078 domain protein [Marinobacter aquaeolei VT8] Length = 637 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN GL+ A L +N++N TVGF++ KV+F ++ + A N I + Sbjct: 2 AFNTGLSGLRAASVDLDVTGNNIANASTVGFKSSKVQFGDLYASGFLSAGTNPIGDGVR- 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 V K+ + SF G LD A+ GD +F L + I +R G+F + +G +V+ Sbjct: 61 VQDVKQSFGQGNISFTDNG--LDMAISGDGFFILNNGGEIRYSRAGQFGIDKEGYVVN 116 >gi|317121822|ref|YP_004101825.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] gi|315591802|gb|ADU51098.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] Length = 406 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 18/158 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIK------ 49 M S G++ + R+ + +N++N +TVGF++ +V F E+ GA Sbjct: 1 MMRSLYAGISGLQNHQLRMDVIGNNIANVNTVGFKSSRVTFKELFNQTLRGAAAPAGPTR 60 Query: 50 ---NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGR 105 N I + +G + + + G+ TG D A++GD +F L+ + G TR G Sbjct: 61 GGTNPIQIGLGTALAGIDVIHQP-GNPQVTGVATDLAIQGDGFFVLQDAAGGYAYTRAGD 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 F++ G LV+A G VL + +P +D + N+G Sbjct: 120 FRLDAAGYLVNADGLR-VLGWQAQGGVLPARDAV-NLG 155 >gi|255022066|ref|ZP_05294072.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] gi|254968552|gb|EET26108.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] Length = 416 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 +N ++ A + L+T+ +N++N +TVGF+ +F ++ A + G Sbjct: 3 YNTAISGLDAAQTDLNTIGNNIANVNTVGFKESNAQFGDLYAASLAGSAGASTTPGIGVS 62 Query: 65 Y--LSKEV--GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 LS+ G+ +TG LD A+ G +F + + + TR+G+F V+ +G L + +G Sbjct: 63 TVDLSQNFTQGNIQTTGNPLDMAINGPGFFIVNNNGTMDYTRNGQFHVSSNGVLEN-NGD 121 Query: 121 YPVLDMASVP 130 PV VP Sbjct: 122 LPVQGFQPVP 131 >gi|148554188|ref|YP_001261770.1| flagellar basal-body rod protein FlgF [Sphingomonas wittichii RW1] gi|148499378|gb|ABQ67632.1| flagellar basal-body rod protein FlgF [Sphingomonas wittichii RW1] Length = 247 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 33/231 (14%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 L+A + R + A+N++N +TVGFR ++ S + + D + + + E S Sbjct: 9 LSAMRSAMARQTMTANNLANANTVGFRG-EMSSSTALWLKGDGFDSRAT---NSGEVTSA 64 Query: 69 EV--GSFISTGTELDFALEG-DAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 ++ G+ TG +LD AL+G D A++S G TR G ++ D G L + G PVL Sbjct: 65 DMSEGTINETGRDLDVALQGKDTLLAVQSREGDEAYTRRGDLQIGDSGLLTTGDG-MPVL 123 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS---QKG-----------KVIATMGLYSVDMSQGFV 170 PI +P D + G+ G IS Q G K+++T G G Sbjct: 124 GDGG-PITLPPYDRLVIAGD-GTISIVPQGGDPTQMQMVDRLKLVSTNGSAVAKGLDGLF 181 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 R ++ G P V++G +E SN N + MI ++ ++ Sbjct: 182 RPQSGGTLGADPQ--------AAVRQGAIEGSNVNVSTTLIDMIEASRDWD 224 >gi|170747256|ref|YP_001753516.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] gi|170653778|gb|ACB22833.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] Length = 263 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 42/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 G+AAQ E + +++N++N T G++ +V F +++ GA + + ++ Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGYKRQQVHFQDLLYQNMRRAGASTSQQNTQLPAGL 66 Query: 59 -VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + SG + S G+ ST + D A+ GD +F + P G +RDG F ++ G Sbjct: 67 SLGSGVKTTSTARVMSQGTLSSTEKDYDVAIRGDGFFRVTLPDGRTAYSRDGSFDLSAQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIAT 157 LV+ G +LD A I +PQ + G + Q + + Sbjct: 127 QLVTRDGY--LLDPA---ITVPQNATSVTISATGAVQANIPGQTAPQALGQFQLSRFVNK 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 +GL S+ FV SG + I P D G +++ +LE++N N++ E+ +I Sbjct: 182 VGLESIG-DNLFVETAASGQA--ISGLPGADGFG-NLQQSYLEEANVNAVTEISSLIAAQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|315497881|ref|YP_004086685.1| flagellar basal-body rod protein flgg [Asticcacaulis excentricus CB 48] gi|315415893|gb|ADU12534.1| flagellar basal-body rod protein FlgG [Asticcacaulis excentricus CB 48] Length = 262 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 42/264 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G++AQ + + T++ N++N +TVGF+ + +F +++ G + Sbjct: 10 GMSAQ---QLNVDTISHNIANMNTVGFKKQRAEFQDLLYQNVERMGAQSSESGTVVPTGI 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 Q V +G Y GS T D ++G +F + P G TR G F V D G Sbjct: 67 QVGGGVKTGSVYRILTQGSATRTDNPYDIMVDGRGYFQVLMPSGETAYTRAGNFAVNDQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKG----KVIATMGLYSVDMS 166 LV+ G + I PQ + + + G++S Q G VI + + S Sbjct: 127 QLVTDDGY-----LVQPQITFPQDTKEVTISKTGQVSVTQDGVTAPTVIGQLQVASFFNE 181 Query: 167 QG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G +++ SG +PNI TP D+ T+ +G+ E SN +++ E+ +I + Sbjct: 182 AGLEAIGDNLYLQSGASG-APNI-GTP-GDVGYGTLMQGYTEASNVDAVSEITSLIVAQR 238 Query: 219 KFNSITTLIDENEK--SMLEAIRN 240 + + +I ++ S+ ++RN Sbjct: 239 AYEMNSKIIKTADEMLSVTSSLRN 262 >gi|321313186|ref|YP_004205473.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] gi|291486214|dbj|BAI87289.1| flagellar hook-basal body protein [Bacillus subtilis subsp. natto BEST195] gi|320019460|gb|ADV94446.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] Length = 269 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 112/257 (43%), Gaps = 34/257 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE---------- 64 L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA ++ Sbjct: 15 LQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVAKARKTPPGLRLGVG 74 Query: 65 -----YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS----- 113 L + GS T +LD A + + G TRDG VT + Sbjct: 75 AMMNSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDGALYVTPSAANANQL 134 Query: 114 -LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIA--TMGLYSVDMSQGF 169 LV+ +G YPVLD + I + + + G ++ G + +G+ V+ Q Sbjct: 135 QLVTGNG-YPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNLGVVQVNNPQEL 193 Query: 170 VRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI--HLTQKFNS 222 N+ S + E+L+G + +++G LE SN + +M +I + + NS Sbjct: 194 KSEGNNLFSID-NAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMTDLITSQRSYQLNS 252 Query: 223 ITTLIDENEKSMLEAIR 239 T + + ++ ++R Sbjct: 253 RTITMGDQMLGLINSVR 269 >gi|222147571|ref|YP_002548528.1| flagellar basal-body rod protein [Agrobacterium vitis S4] gi|221734559|gb|ACM35522.1| flagellar basal-body rod protein [Agrobacterium vitis S4] Length = 263 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 46/241 (19%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY- 65 A + L +++N++N +T GF+ + +FS++ VG + N +Q S V G Sbjct: 13 AQQTNLEVISNNIANINTTGFKKSRAEFSDLLYQTEKAVG-VANRANQ--STVPEGANIG 69 Query: 66 ---------LSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSL 114 E G T ELD A+ G + ++SP G TR G DG+L Sbjct: 70 LGVQTAAVRTMNEQGELSETSNELDVAIVGRGYLQVQSPDGATTFYTRAGALNKDSDGNL 129 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMG 159 V+ G Y ++ ++P + + E GE+S + + G Sbjct: 130 VTTEG-YKIIPNITIPTDATE----VKISESGEVSVLQGDSSTYTTLGQLETSAFVNPAG 184 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L ++ + F +SG N P D +K+G+LE SN +S+ E+ +I + Sbjct: 185 LKAIGDNL-FQETASSGNPINGVPG---DAGYGYLKQGYLESSNVDSVTEITSLISAQRA 240 Query: 220 F 220 + Sbjct: 241 Y 241 >gi|332298514|ref|YP_004440436.1| flagellar basal-body rod protein FlgG [Treponema brennaborense DSM 12168] gi|332181617|gb|AEE17305.1| flagellar basal-body rod protein FlgG [Treponema brennaborense DSM 12168] Length = 264 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 39/256 (15%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDID----QKISFVASG 62 + + +++N+SN +T G++ +V+F +++ A ++ + Q + V G Sbjct: 16 QANIDAISNNLSNVNTTGYKQQRVEFEDLIYQNLKLAGTPATEDTVTPVGIQMGTGVKVG 75 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG-- 119 GS +TG + D A+ G+ +F ++ G TRDG FKV +G LV++ G Sbjct: 76 ATQRIITQGSLQNTGVDTDMAVVGEGFFRVQQYDGSFAYTRDGSFKVDMNGQLVTSEGLR 135 Query: 120 --------------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 V D V ++I D+ VG+ + + +GL + Sbjct: 136 VMPEIILPEGYNLSTLTVSDDGRVTVKIAGNDDPLTVGQL----ELYRFPNAVGLEATG- 190 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 S F SG + I P D GVT K FLE SN + + EM QMI + Q+ ++ Sbjct: 191 SNLFKVTNASGAA--IAGRPGFDGMGVT-KHKFLEMSNVSVVNEMVQMI-VAQRAYEFSS 246 Query: 226 LIDENEKSMLEAIRNI 241 + +ML + N+ Sbjct: 247 KAIQTSDTMLSSAVNL 262 >gi|197285510|ref|YP_002151382.1| flagellar hook protein FlgE [Proteus mirabilis HI4320] gi|227356001|ref|ZP_03840393.1| flagellar hook protein [Proteus mirabilis ATCC 29906] gi|194682997|emb|CAR43446.1| flagellar hook protein [Proteus mirabilis HI4320] gi|227163989|gb|EEI48891.1| flagellar hook protein [Proteus mirabilis ATCC 29906] Length = 406 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 10/128 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L T+ +N+SN+ T GF+ V F++V + K+S ++ Sbjct: 2 SFSQAVSGLNAAAANLDTIGNNISNSATYGFKGATVSFADVFAGSGAGLGVKVSGISQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASG--- 119 + + GS +T D A+ G +F +E S G+ +R+G F +G L + G Sbjct: 60 ---NFKDGSITTTNRPTDVAISGGGFFRIEDSNGGVFYSRNGEFGKDKNGYLTNMQGMRI 116 Query: 120 -KYPVLDM 126 YPV ++ Sbjct: 117 TGYPVQNV 124 >gi|114330362|ref|YP_746584.1| flagellar basal body rod protein FlgF [Nitrosomonas eutropha C91] gi|114307376|gb|ABI58619.1| flagellar basal-body rod protein FlgF [Nitrosomonas eutropha C91] Length = 247 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 28/233 (12%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTE 79 +TV+ N++N T GFR F V + + +FV G+ T Sbjct: 20 ATVSHNLANASTTGFRAQADAFRAV--PVYGESLPTRAFVLDSTTGADFTPGAIQQTDRP 77 Query: 80 LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE 138 LD A++G W ++ G TR G K +G L + G + + PI IP D Sbjct: 78 LDVAIQGSGWITVQLENGEEAYTRHGNLKTDANGVLQTQQGFN--IKGETGPITIP-PDS 134 Query: 139 IFNVGEKGEIS--------QKGKVIATMGLYSVDMSQ------GFVRRENSGISPNIPPT 184 +G+ G +S +I + L Q G R + G +P Sbjct: 135 RVAIGKDGSVSVLPSDSRITAVSIIGRIKLVDPPAEQLVRGDDGLFRLKQGGEAPASGKV 194 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 L D G LE SN N++ EM +MI L ++F+ +++ +++ +A Sbjct: 195 ALID--------GALESSNVNAVSEMVKMITLARQFDMQMKMLENAQQNAQQA 239 >gi|73539450|ref|YP_299817.1| flagellar hook protein FlgE [Ralstonia eutropha JMP134] gi|72122787|gb|AAZ64973.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Ralstonia eutropha JMP134] Length = 417 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F G++ A L + +N++N++TVG++ +F++V K + ++ V Sbjct: 3 FGQGVSGINAAAANLDVIGNNIANSNTVGYKASTAQFADVYAGTKIGLGTTVNSVVQ--- 59 Query: 65 YLSKEVGSFISTGTELDFAL-EGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 S G+ +T LD A+ G +F L G + +R+G+F TDDG +V+A G Sbjct: 60 --SFTQGNIQATNRSLDVAITNGSGFFRLVGTDGSVHFSRNGQFARTDDGRIVNAQG 114 >gi|219685599|ref|ZP_03540415.1| flagellar hook-basal body complex protein [Borrelia garinii Far04] gi|219672877|gb|EED29900.1| flagellar hook-basal body complex protein [Borrelia garinii Far04] Length = 282 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A +L V++N++N D VG++ +I+ F E++ ND D F Sbjct: 10 SGMMAERHKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +T LD AL +F +++ G TR+G F + Sbjct: 69 PIVGKLGTGVEENEIYTLFEQGPLKTTSNPLDLALTDQGFFVIQTSYGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|94263287|ref|ZP_01287103.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94267694|ref|ZP_01290963.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451896|gb|EAT02627.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456370|gb|EAT06494.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 260 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 20/148 (13%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFVASGK 63 +L T+++N++N +T GF+ + +F ++ G + + + + A+ Sbjct: 18 QLDTISNNLANVNTAGFKKSRTQFEDLYYQELRAVGVENIDGGQVPSGMQVGLGVKATAN 77 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + + + GS TG++LD A+EG +F + TR G F DG +V+ +G Sbjct: 78 QKIFTQ-GSIHETGSDLDIAIEGKGFFQVLKDGEEFYTRAGNFTRDADGFIVTQNG---- 132 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQK 151 D QIP + ++G G I K Sbjct: 133 -DRLQPEFQIPPETVSLHIGADGLIQAK 159 >gi|71736953|ref|YP_275563.1| flagellar hook protein FlgE [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484949|ref|ZP_05638990.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71557506|gb|AAZ36717.1| flagellar hook protein FlgE [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325093|gb|EFW81162.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. B076] gi|320329352|gb|EFW85345.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] gi|331011042|gb|EGH91098.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 441 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFSQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SASG 119 ++ G Sbjct: 118 NSGG 121 >gi|54307272|ref|YP_128292.1| putative FlgG flagellar basal-body rod protein [Photobacterium profundum SS9] gi|46911692|emb|CAG18490.1| Putative FlgG flagellar basal-body rod protein [Photobacterium profundum SS9] Length = 261 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 24/157 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----IDQKISFVAS-- 61 GLAAQ + ++ +++N++N +TVGF+ + F ++ +K DQ+ Sbjct: 11 GLAAQ---DTQMQVISNNLANVNTVGFKQDRAVFEDLFYQMKKQPGAMTDQQNENPGGLQ 67 Query: 62 --------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 G + L K G++ +T D A+ G +F +E G TR+G+F +G Sbjct: 68 LGNGVRVVGTQKLMK-TGAYQNTEQATDLAVLGSGFFQIELADGNTGYTRNGQFHRNSEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V+A+G P++ I+IP+ F+VG G ++ Sbjct: 127 MMVTAAG-LPLMP----NIEIPENATNFSVGTDGMVT 158 >gi|298487857|ref|ZP_07005897.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157582|gb|EFH98662.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 441 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFSQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SASG 119 ++ G Sbjct: 118 NSGG 121 >gi|149375032|ref|ZP_01892805.1| Flagellar basal body rod protein [Marinobacter algicola DG893] gi|149360921|gb|EDM49372.1| Flagellar basal body rod protein [Marinobacter algicola DG893] Length = 262 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 40/261 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------------D 51 GL+AQ + +ST+++N++N +T GF+ + F +++ I Sbjct: 11 GLSAQ---DTNMSTISNNLANVNTTGFKRDRAVFQDLLYQIDRQPGGLNTQNSELPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + + V + K++ G+ T LD A+ G + + P G I TRDG+F++ Sbjct: 68 LGTGVRIVGTAKQF---SQGNLEVTEQPLDMAVNGRGFMQILLPDGQIAYTRDGQFQLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKV-IATMGLYSVD 164 +G +V+ G Y + I +P+ +G+ G +S Q V + + L Sbjct: 125 NGDIVNPDG-YTL----EPNINVPENATNITIGKDGTVSAVTDDQAAPVNLGEITLVDFI 179 Query: 165 MSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 QG N+ + N P E G+ T+++G +E SN + E+ MI TQ+ Sbjct: 180 NPQGLQAIGNNLFKATNASGDPAEGEPGIGGLGTLEQGMVEASNVEVVEELVNMIT-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRN 240 + + + ML+ I N Sbjct: 239 AYEMNSKVVSATDQMLQFITN 259 >gi|260429561|ref|ZP_05783538.1| flagellar hook protein FlgE [Citreicella sp. SE45] gi|260420184|gb|EEX13437.1| flagellar hook protein FlgE [Citreicella sp. SE45] Length = 431 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 19/134 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ RL+ ++DN++N+ T G+R ++ F+ +V + ++ A Sbjct: 3 ISSSLNAGVSGLSGNASRLAAISDNIANSSTYGYRRVETDFTALVMS-----SGTRTYTA 57 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEG---------DAWFALESPRGIILTRDGRFK 107 G + V G+ +ST D A++G + A P ++LT G F+ Sbjct: 58 GGTSVDNLRVVDQGGALVSTSNATDLAIDGIGMLPVVAVSQYEATGEPE-LLLTSTGSFR 116 Query: 108 VTDDGSLVSASGKY 121 + ++G L S SG Y Sbjct: 117 IDENGYLASESGYY 130 >gi|218528727|ref|YP_002419543.1| flagellar hook protein FlgE [Methylobacterium chloromethanicum CM4] gi|218521030|gb|ACK81615.1| flagellar basal body FlaE domain protein [Methylobacterium chloromethanicum CM4] Length = 403 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 24/125 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKI 56 G++ A R+STVA+N+ N T G++ +FS ++ GA++ + + + Sbjct: 10 GVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRSV 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKV-TDDGSL 114 S E G ST ++ D A++G+ +F + G +TR G F V G+L Sbjct: 70 S-----------EGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNL 118 Query: 115 VSASG 119 V+A G Sbjct: 119 VNAGG 123 >gi|319405421|emb|CBI79040.1| Flagellar hook protein FlgE [Bartonella sp. AR 15-3] Length = 402 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 23/137 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLS VADN++N TVG++ V+FS V G +K+ I IS Sbjct: 10 GVSGMNAQGTRLSGVADNVANVGTVGYKRTNVQFSNYVTPSGQYAYVPGGVKSHIGHDIS 69 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 SG + +TG D + G +F + G LTR G F G L + Sbjct: 70 I--SGPAH---------ATGRSGDVMIHGSGFFRVADENGKEFLTRAGSFTRDKGGYLRN 118 Query: 117 ASGKYPVLDMASVPIQI 133 +G Y +L+ IQI Sbjct: 119 TAGYY-LLNEDGERIQI 134 >gi|254973936|ref|ZP_05270408.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-66c26] gi|255091322|ref|ZP_05320800.1| flagellar basal body rod protein FlgG [Clostridium difficile CIP 107932] gi|255312980|ref|ZP_05354563.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-76w55] gi|255515739|ref|ZP_05383415.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-97b34] gi|255648833|ref|ZP_05395735.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-37x79] gi|260682050|ref|YP_003213335.1| flagellar basal body rod protein FlgG [Clostridium difficile CD196] gi|260685648|ref|YP_003216781.1| flagellar basal body rod protein FlgG [Clostridium difficile R20291] gi|260208213|emb|CBA60571.1| putative flagellar basal-body rod protein [Clostridium difficile CD196] gi|260211664|emb|CBE01933.1| putative flagellar basal-body rod protein [Clostridium difficile R20291] Length = 253 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 24/237 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T F A A + +L +++N++N+D+ G++ I +++S++V + N + S+ Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLVDEVLN----RPSYPT 56 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 +G + + E G+ T ++ + A++G+ +F + G TR+G F Sbjct: 57 NGNDISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYAYTRNGGFN 116 Query: 108 VTDDGSLVSASGKYPVLDM---ASVPIQIPQKDEI-FNVGEKGEISQKGKVIATMGLYSV 163 + G +V +G +LD+ A D V GE+ K I + LY Sbjct: 117 IDGLGKIVDDNGN--ILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQP 174 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +Q F+ E + ++ + V + +G+ E SN + E +I + F Sbjct: 175 IGTQNFI-SEGDSLFVATDAAQIKQVEKVDIVQGYRERSNVSLQEEFVDLIATQRAF 230 >gi|39933722|ref|NP_945998.1| flagellar hook protein FlgE [Rhodopseudomonas palustris CGA009] gi|39647569|emb|CAE26089.1| possible flagellar hook protein FlgE [Rhodopseudomonas palustris CGA009] Length = 421 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA-SGKEYLS 67 ++A A Q LS ++DN++N+DT G++T FS++V A + V +G+ +S Sbjct: 11 ISALNAQSQSLSMISDNIANSDTTGYKTTSAMFSQLVTASSSATSYASGGVTVAGRANIS 70 Query: 68 KEVGSFISTGTELDFALEGDAWFAL--ESPRGII-LTRDGRFKVTDDGSLVSASGKY 121 ++ G +T D A++G +F + ++ G TR+G F + + G LV+ SG Y Sbjct: 71 QQ-GLLAATSNATDVAIQGSGFFVVSDQTSGGTTSYTRNGAFSIDNAGYLVN-SGYY 125 >gi|332298237|ref|YP_004440159.1| flagellar hook-basal body protein [Treponema brennaborense DSM 12168] gi|332181340|gb|AEE17028.1| flagellar hook-basal body protein [Treponema brennaborense DSM 12168] Length = 463 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + RL + +N++N +T GF+ +V F ++ I Q++S A Sbjct: 1 MMRSLYSGVSGMQNHQTRLDVIGNNVANVNTTGFKRGRVNFQDM-------ISQQLSGAA 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 + KEVG + STG D A++G+ +F L++ T Sbjct: 54 KPTTEVGGVNPKEVGLGVMVASIDTVFTQGNLQSTGVATDVAIQGNGFFVLKNGEETFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F + DG+LV+ Sbjct: 114 RAGAFGLDSDGTLVN 128 >gi|237799207|ref|ZP_04587668.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806226|ref|ZP_04592930.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022062|gb|EGI02119.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027339|gb|EGI07394.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 582 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +G N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYSSAQLGNGNNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 A + + E + IS+G LD ++G+ +F + + TR G F Sbjct: 62 AAVQQNFNQGE--TVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAF 107 >gi|192289142|ref|YP_001989747.1| flagellar hook protein FlgE [Rhodopseudomonas palustris TIE-1] gi|192282891|gb|ACE99271.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris TIE-1] Length = 421 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA-SGKEYLS 67 ++A A Q LS ++DN++N+DT G++T FS++V A + V +G+ +S Sbjct: 11 ISALNAQSQSLSMISDNIANSDTTGYKTTSAMFSQLVTASSSATSYASGGVTVAGRANIS 70 Query: 68 KEVGSFISTGTELDFALEGDAWFAL--ESPRGII-LTRDGRFKVTDDGSLVSASGKY 121 ++ G +T D A++G +F + ++ G TR+G F + + G LV+ SG Y Sbjct: 71 QQ-GLLAATSNATDVAIQGSGFFVVSDQTSGGTTSYTRNGAFSIDNAGYLVN-SGYY 125 >gi|325982370|ref|YP_004294772.1| flagellar basal-body rod protein FlgF [Nitrosomonas sp. AL212] gi|325531889|gb|ADZ26610.1| flagellar basal-body rod protein FlgF [Nitrosomonas sp. AL212] Length = 247 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 33/245 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A L Q+ +TVA N++N T G+R+ F V + D +FV Sbjct: 11 GANHTLNQQ-ATVAHNLANASTTGYRSETNAFRAV--PLFGDGLPTRAFVVDSTTGSDFT 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G +TG +LD A+ G W +++ G TR+G +V +G L++ +G D Sbjct: 68 TGPLETTGRDLDVAIRGPGWISVQLDNGEEAYTRNGSLQVGPNGLLLTQNGLKVKGDTGV 127 Query: 129 VPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYS---------VDMSQGFVRREN 174 I +P + I +G G +S +A +G V + G R+++ Sbjct: 128 --ISVPPETRI-TIGVDGTVSTVPLNALPNTVAIVGRIKLVNPPEESLVKGADGLFRQKD 184 Query: 175 SGISPNIPPTPLEDLSGVTVK--RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 E L V+ G LE SN N ++EM MI L ++F+ +++ E+ Sbjct: 185 GK----------EALVDARVRLIDGTLEGSNVNVVHEMVSMIALARQFDMQMKMLENAER 234 Query: 233 SMLEA 237 + +A Sbjct: 235 NAQQA 239 >gi|28900123|ref|NP_799778.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837106|ref|ZP_01989773.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ3810] gi|260365773|ref|ZP_05778269.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus K5030] gi|260880695|ref|ZP_05893050.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AN-5034] gi|260897699|ref|ZP_05906195.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus Peru-466] gi|260899390|ref|ZP_05907785.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ4037] gi|28808406|dbj|BAC61611.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749694|gb|EDM60439.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ3810] gi|308086220|gb|EFO35915.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus Peru-466] gi|308092603|gb|EFO42298.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AN-5034] gi|308109250|gb|EFO46790.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ4037] gi|308115048|gb|EFO52588.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus K5030] Length = 243 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 103/213 (48%), Gaps = 31/213 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +V+ E+ G D + + V + + G + TG L Sbjct: 23 SNNLSNADTAGFRADMERVRSVELQGP---GFDGR-TMVVTNSASTRFDSGDVVKTGRAL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ G+ + A+E+P G TR G ++ G++ S +G +PV+ + P+ +P +I Sbjct: 79 DVAVMGEGYLAVETPAGNEAYTRAGNIQIDTFGAM-SING-FPVVG-ENGPLVVPDYQKI 135 Query: 140 FNVGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 EIS++G V + T+ L +++Q +++E+ + ++ P Sbjct: 136 -------EISERGLVSVIPPGGGAEIAVGTLKLVKPEINQ--LQKESDSLLHSVDGVPFA 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + +E SN +++ E+ ++ LT+ F Sbjct: 187 ADETVQLAPEHIEGSNVSAIDELIGVMSLTRNF 219 >gi|330899401|gb|EGH30820.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 348 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKN-DIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + G N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ GS ++TGT LD A+ GD +F + + + TR G F +G +V Sbjct: 62 TAAVSQQF---SQGS-LTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SAS 118 ++S Sbjct: 118 NSS 120 >gi|330880522|gb|EGH14671.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] Length = 390 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 12/124 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + + ++ ++ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ ++TGT LD A+ G+ +F L + + TR G F +G +V Sbjct: 62 TAAVSQQFSQGN----LTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SASG 119 ++ G Sbjct: 118 NSGG 121 >gi|295400717|ref|ZP_06810694.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112591|ref|YP_003990907.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] gi|294977298|gb|EFG52899.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217692|gb|ADP76296.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] Length = 274 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 113/283 (39%), Gaps = 55/283 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR--------------------TIKVK 40 M F + +A ++R+ + +N++N +T G++ T+ K Sbjct: 1 MLRGFYTAASGMMAQQRRVEMLTNNIANANTPGYKADQAALRAFPELFLSRLEETTVPTK 60 Query: 41 -------FSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL--------E 85 F+ VG I + + + ++ G TG D AL Sbjct: 61 EAPRSFPFNAAVGPINTGVYMQ-ELIPDFRQ------GDIKETGRPTDIALINGALPAAG 113 Query: 86 GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGE 144 G +F +++ G I TR+G F V G L + G Y VLD I +P +D F V Sbjct: 114 GTLFFVVQNENGDIRYTRNGNFTVNPQGFLTTNDGWY-VLDENGQRIALPSED--FTVNA 170 Query: 145 KGEISQKGKVIATMGLYSVDMSQGFVR------RENSGISPNIPPTPLEDLSGVTVKRGF 198 G I IA + + V+ R +G+ P+ P +++ T K+GF Sbjct: 171 DGTIVAGNARIARINIAFAANPNTLVKEGNGLFRSEAGMLPSALNNP--NVT-YTFKQGF 227 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +E SN + M +M+ + F + ++ +KSM +A+ I Sbjct: 228 VERSNVDLNRAMTEMLSAYRAFEANQKIVQAYDKSMEKAVNEI 270 >gi|254463756|ref|ZP_05077167.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium Y4I] gi|206684664|gb|EDZ45146.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium Y4I] Length = 261 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 46/245 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++AQ + R+ T+++N++N +T + + +F+++ I + + AS L Sbjct: 10 GMSAQ---QLRVETISNNLANMNTTAYNARRAEFADL---HYQQISRAGTVNASDGTVLP 63 Query: 68 KEV-----------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 V G+ T +LD A++G+ + + P G TRDG K + Sbjct: 64 TGVQVGLGVRPAAVSVHLSQGALQQTNNDLDVAIDGNGYLEVTLPSGQSAYTRDGALKRS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 +G +V++ G + V S I IP ++ +GE+ S +G+++ L S Sbjct: 124 AEGLIVTSDG-FAV----SPEITIPDDATSISINAEGEVYGYFQDSPEGQLLGQFTLASF 178 Query: 164 DMSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +G F E SG + T ED G T+++G+LE S+ +++ E+ ++I Sbjct: 179 TNPKGLEAIGSNLFTETEASGAA--TVTTAGEDGLG-TLRQGYLEGSSVDAVREVTELIE 235 Query: 216 LTQKF 220 + + Sbjct: 236 AQRGY 240 >gi|94968673|ref|YP_590721.1| flagellar basal body FlaE [Candidatus Koribacter versatilis Ellin345] gi|94550723|gb|ABF40647.1| flagellar basal body FlaE [Candidatus Koribacter versatilis Ellin345] Length = 409 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 11/123 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF----VA 60 F+I L+ A L+T+A+N++N +T+G++ + F ++ I Q S V Sbjct: 4 FSIPLSGLTASSTALATIANNLANQNTIGYKQTRALFRDL---FYQQIGQTGSGDPIQVG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +G + + GS TG D A+ GD +F + I TR G FKV DG+L + Sbjct: 61 AGTMIGTIDTNFTDGSVSPTGVPTDVAIMGDGFFVAQQNGNDIYTRAGNFKVGADGTLRT 120 Query: 117 ASG 119 G Sbjct: 121 QDG 123 >gi|296157456|ref|ZP_06840291.1| fagellar hook-basal body protein [Burkholderia sp. Ch1-1] gi|295892228|gb|EFG72011.1| fagellar hook-basal body protein [Burkholderia sp. Ch1-1] Length = 503 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 L + +N++N +TVGF++ +F++ V A+ N I +++ G+ Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLADVQQQF---SQGTI 73 Query: 74 ISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------KYPVL 124 ST LD A+ G+ +F L + ++ +R+G F++ +G + +A G ++ Sbjct: 74 TSTNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGII 133 Query: 125 DMA-SVPIQIPQKD 137 + A +VP+ +P + Sbjct: 134 NTAQTVPLTVPTAN 147 >gi|66046707|ref|YP_236548.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae B728a] gi|63257414|gb|AAY38510.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] Length = 442 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKN-DIDQKIS 57 SFNIGL+ A + L +N++N T GF++ + +F++ + G N + + Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 A +++ GS ++TGT LD A+ GD +F + + + TR G F +G +V Sbjct: 62 TAAVSQQF---SQGS-LTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVV 117 Query: 116 SAS 118 ++S Sbjct: 118 NSS 120 >gi|240137257|ref|YP_002961726.1| flagellar hook protein FlgE [Methylobacterium extorquens AM1] gi|240007223|gb|ACS38449.1| flagellar hook protein FlgE [Methylobacterium extorquens AM1] Length = 403 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 24/125 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKI 56 G++ A R+STVA+N+ N T G++ +FS ++ GA++ + + + Sbjct: 10 GVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRSV 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD-GSL 114 S E G ST ++ D A++G+ +F + G +TR G F V G+L Sbjct: 70 S-----------EGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNL 118 Query: 115 VSASG 119 V+A G Sbjct: 119 VNAGG 123 >gi|163850123|ref|YP_001638166.1| flagellar hook protein FlgE [Methylobacterium extorquens PA1] gi|163661728|gb|ABY29095.1| protein of unknown function DUF1078 domain protein [Methylobacterium extorquens PA1] Length = 403 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 24/125 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKI 56 G++ A R+STVA+N+ N T G++ +FS ++ GA++ + + + Sbjct: 10 GVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRSV 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD-GSL 114 S E G ST ++ D A++G+ +F + G +TR G F V G+L Sbjct: 70 S-----------EGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNL 118 Query: 115 VSASG 119 V+A G Sbjct: 119 VNAGG 123 >gi|32490792|ref|NP_871046.1| flagellar basal body rod protein FlgG [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165998|dbj|BAC24189.1| flgG [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 260 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +++N+SN T GF+ K F +++ GA ++ Sbjct: 11 GLEAQ---QINMDVISNNISNVSTNGFKRQKAIFEDLLYQTIRQPGAKSSEQTILPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 + ++ A+ K +L G +TG E D A++G +F + G + TR+G F++ Sbjct: 68 LGTGVNSSATIKIHLQ---GGLTNTGNETDIAIQGPGFFQVLMSDGTNMYTRNGSFQLDQ 124 Query: 111 DGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQK--GKV-----IATM 158 G LV+++G YPV ++P + I KD I +V G+ + G++ I + Sbjct: 125 YGQLVTSNG-YPVQPSITIPNGSSNLTI-SKDGIVSVMVPGQTQPQEVGQLTISTFINSS 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL S S + S SP TP + +G ++K+ F+E+SN N E+ MI TQ Sbjct: 183 GLESAGES--LYKETQSSGSP-ADNTPGMNGAG-SLKQKFVENSNVNIAEELITMIQ-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + + + ML+ + + Sbjct: 238 RAYELNSKVISTSDQMLQRLSQL 260 >gi|90021854|ref|YP_527681.1| flagellar basal body rod protein FlgF [Saccharophagus degradans 2-40] gi|89951454|gb|ABD81469.1| Flagellar basal-body rod FlgF [Saccharophagus degradans 2-40] Length = 249 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 46/223 (20%) Query: 23 ADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 A+N++N +T GF R++ + + E + + + + S+ G+ + Sbjct: 23 ANNLANVNTTGFKADFAQARSMPIYYGE------GEPTRAYALTENPGTNFSQ--GALVE 74 Query: 76 TGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG ELD A+E + + A+++P G TR G + G L + +G PVL PI +P Sbjct: 75 TGRELDIAVEREGFIAVQAPDGTEAFTRAGSLHIDSVGILRTGNG-LPVLGNGG-PIALP 132 Query: 135 QKDEI----------FNVGEKGEISQKGKVIATMGLYSVDMS------QGFVRR-ENSGI 177 ++I +GE E + + + L + D++ G +R EN G Sbjct: 133 PAEKIEMAADGTITLIPLGEGKEATVQADRVK---LVNPDVNTLTKSEDGLLRALENDG- 188 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ V + GFLE SN N++ E+ M+ L++++ Sbjct: 189 -------EVQADGTVRIVSGFLEASNVNAVNELVSMLELSRQY 224 >gi|153946948|ref|YP_001399635.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis IP 31758] gi|152958443|gb|ABS45904.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis IP 31758] Length = 243 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 35/215 (16%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG------SFI 74 A+N++NT+T GFR K ++V+G+ N S VA LS+ G S Sbjct: 23 ANNLANTNTQGFRADLEKATATQVMGSGYN------SRVA----VLSQNAGVDMTPASLQ 72 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG +LD A++ A+ S + TR+G+ +V+ DG L + +G PVL PI +P Sbjct: 73 ETGRDLDIAVKNQGLIAVLSGGREVYTRNGQMEVSADGDL-TING-LPVLGDGG-PIVLP 129 Query: 135 QKDEIFNVGEKGEIS---QKGKV-----IATMGLYSVDMSQGFVRRENSG-ISPNIPPTP 185 ++ + G I+ Q G + I + L VD+ +R+ N G + N P Sbjct: 130 PYSA-LSIADDGTIAIIPQAGGIKTPEEIERIKL--VDIPANQLRKNNRGLLVSNRGPAA 186 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ V V LE SN +++ EM I L+++F Sbjct: 187 RDE--AVQVVNKHLESSNVSAISEMIASISLSRQF 219 >gi|330975977|gb|EGH76043.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 581 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +GA ++ + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E + IS+G LD ++G+ +F + + TR G F Sbjct: 62 ASVQQNFNQGE--TVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAF 107 >gi|330972414|gb|EGH72480.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 582 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +GA ++ + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E + IS+G LD ++G+ +F + + TR G F Sbjct: 62 ASVQQNFNQGE--TVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAF 107 >gi|156934440|ref|YP_001438356.1| flagellar hook protein FlgE [Cronobacter sakazakii ATCC BAA-894] gi|156532694|gb|ABU77520.1| hypothetical protein ESA_02271 [Cronobacter sakazakii ATCC BAA-894] Length = 409 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 22/136 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ V F+++ K + K++ + +++ G Sbjct: 12 AASTNLDVIGNNIANSATYGFKSGSVSFADMFAGSKAGLGVKVAGI-------TQDFGDG 64 Query: 74 IST--GTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVS----------ASGK 120 ++T G +LD A+ + +F L +S G+ +R+G+FK+ + +LV+ A+G Sbjct: 65 VTTNTGRKLDVAISQNGFFRLLDSNGGVFYSRNGQFKLDEKSNLVNMQGMQVTGYPATGT 124 Query: 121 YPVLDMAS--VPIQIP 134 P + + +P+ IP Sbjct: 125 PPTIQQGADPIPLTIP 140 >gi|166712062|ref|ZP_02243269.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzicola BLS256] Length = 407 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ Sbjct: 62 SNVAQQF---SQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQ 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|254503336|ref|ZP_05115487.1| Flagellar basal body protein FlaE [Labrenzia alexandrii DFL-11] gi|222439407|gb|EEE46086.1| Flagellar basal body protein FlaE [Labrenzia alexandrii DFL-11] Length = 421 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A +L VADN++N+ T G++ + +F+ V A + V + +Y Sbjct: 4 GVSGMNAQSSKLGAVADNIANSSTTGYKRAETEFASQVLA-QGGGSYNSGGVQAHTKYAI 62 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI----ILTRDGRFKVTDDGSLVSASGKY 121 + GS T ++LD A++G+ +F + G LTR G F G LV+ +G Y Sbjct: 63 SDQGSMSFTTSKLDLAVDGNGFFIVSDSTGAGASQALTRAGSFVPDGQGYLVNTAGMY 120 >gi|170768358|ref|ZP_02902811.1| flagellar basal-body rod protein FlgG [Escherichia albertii TW07627] gi|170123124|gb|EDS92055.1| flagellar basal-body rod protein FlgG [Escherichia albertii TW07627] Length = 260 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEI--SQKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAVPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + S +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESI--GENLYSETQSSGAPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|74317652|ref|YP_315392.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] gi|74057147|gb|AAZ97587.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] Length = 405 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 12/123 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-------AIKNDIDQKI 56 SF GL+ A + L + +N+SN TVGF+ + +F++V I K+ Sbjct: 2 SFQQGLSGLNAAAKNLDVIGNNVSNASTVGFKQSQAQFADVYANSLTGAGGSSIGIGVKV 61 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + VA +++ G+ ST LD A+ G +F +++ I R+G+F++ +G +V+ Sbjct: 62 AQVA--QQFTQ---GNITSTNNPLDMAINGGGFFRMDNGGEIAYQRNGQFQLDKNGYIVN 116 Query: 117 ASG 119 +G Sbjct: 117 PTG 119 >gi|146278769|ref|YP_001168928.1| hypothetical protein Rsph17025_2736 [Rhodobacter sphaeroides ATCC 17025] gi|145557010|gb|ABP71623.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 474 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFV 59 + +S N G+A A +L+++ADN++N+ T G++ F S V+ N V Sbjct: 3 ISSSLNAGVAGLYANATKLASIADNIANSGTYGYKRADADFESMVITQSANSGTYSAGGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWF------ALESPRG---IILTRDGRFKVTD 110 + L +E G+ +ST +D A+ G +L S G +++TR G FK Sbjct: 63 RANTLRLVEERGAIVSTSNAMDIAISGRGMLPVVRETSLGSTTGNDALLMTRTGSFKTDP 122 Query: 111 DGSLVSASG 119 +G L + +G Sbjct: 123 NGVLKTDTG 131 >gi|257871297|ref|ZP_05650950.1| flagellar hook protein [Enterococcus gallinarum EG2] gi|257805461|gb|EEV34283.1| flagellar hook protein [Enterococcus gallinarum EG2] Length = 312 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 15/134 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S G++ L+ ++ V++N++N +TVGF++ +V F +++ ++ Sbjct: 15 MLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLG 74 Query: 55 -----KISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGR 105 +I V +G VG+ STG +DF + G +F ++ P TRDG Sbjct: 75 GINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGA 134 Query: 106 FKVTDDGSLVSASG 119 F +G+L ++ G Sbjct: 135 FVRDSNGTLTNSDG 148 >gi|254559268|ref|YP_003066363.1| flagellar hook protein FlgE [Methylobacterium extorquens DM4] gi|254266546|emb|CAX22310.1| flagellar hook protein FlgE [Methylobacterium extorquens DM4] Length = 403 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 24/125 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKI 56 G++ A R+STVA+N+ N T G++ +FS ++ GA++ + + + Sbjct: 10 GVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRSV 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD-GSL 114 S E G ST ++ D A++G+ +F + G +TR G F V G+L Sbjct: 70 S-----------EGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNL 118 Query: 115 VSASG 119 V+A G Sbjct: 119 VNAGG 123 >gi|219684370|ref|ZP_03539314.1| flagellar hook-basal body complex protein [Borrelia garinii PBr] gi|219672359|gb|EED29412.1| flagellar hook-basal body complex protein [Borrelia garinii PBr] Length = 282 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A +L V++N++N D VG++ +I+ F E++ ND D F Sbjct: 10 SGMMAERHKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +T LD AL +F +++ G TR+G F + Sbjct: 69 PIVGKLGTGVEENEIYTLFEQGPLKTTSNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|323700469|ref|ZP_08112381.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323460401|gb|EGB16266.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 516 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 11/126 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKIS 57 S G++ A Q S V++N++N+ T G++++ + F +V G + ++ Sbjct: 6 SMYTGISGLQAQSQATSVVSNNLANSTTTGYKSVSIAFEDVFYSTVYAGGSLGQVGNGVT 65 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLV 115 + +Y G++ +T + D A+ GD ++ + P TRDG F + DG LV Sbjct: 66 TSSLTTDY---SQGAYETTNSVTDVAINGDGFYIVVDPDTGNTYYTRDGGFTLDTDGYLV 122 Query: 116 SASGKY 121 + G + Sbjct: 123 DSHGNH 128 >gi|134283656|ref|ZP_01770355.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 305] gi|134245065|gb|EBA45160.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 305] Length = 404 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 18/134 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 L + +N++N +TVGF+ +FS+ V A+ N I + +AS ++ S+ G+ Sbjct: 8 LDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIG-TMLASVQQQFSQ--GTI 64 Query: 74 ISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG----KYP------V 123 S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Y + Sbjct: 65 TSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNSQGLNLMGYAANANGVI 124 Query: 124 LDMASVPIQIPQKD 137 A+VP+Q P + Sbjct: 125 NTAATVPLQAPTTN 138 >gi|58582195|ref|YP_201211.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624088|ref|YP_451460.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426789|gb|AAW75826.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368028|dbj|BAE69186.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 407 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ Sbjct: 62 SNVAQQF---SQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQ 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|329297209|ref|ZP_08254545.1| Flagellar basal-body rod protein flgG [Plautia stali symbiont] Length = 260 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 36/260 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +A+N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRSRAVFEDLMYQTLRQPGAQSSEQTTLPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G E L + G+ T + A+ G +F ++ P G TRDG F+V +G Sbjct: 68 IGTGVRPVTTERLHNQ-GNLSQTSNSKNVAINGQGYFQVQMPDGTSAYTRDGSFQVDQNG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEI--SQKGKVIATM-----GLY 161 LV+ +G +PV ++P +D + V ++G+ +Q G++ + GL Sbjct: 127 QLVTNAG-FPVQPGITIPANATSITIARDGVVTVTQQGQTQPAQVGQLTLSTFMNDAGLD 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 SV + + +E TP ++ +G+ + + ++E SN N E+ MI TQ+ Sbjct: 186 SVGEN---LYQETQASGAPTESTPGQNGAGL-LYQSYVETSNVNVAEELVTMIQ-TQRAY 240 Query: 222 SITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 241 EINSKAISTSDQMLQKLTQL 260 >gi|119899027|ref|YP_934240.1| FlgE protein [Azoarcus sp. BH72] gi|119671440|emb|CAL95353.1| FlgE protein [Azoarcus sp. BH72] Length = 445 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 14/126 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--------VGAIKNDIDQK 55 +F GL+ + + L +++N++N TVGF+ F+++ +++ I K Sbjct: 2 AFQQGLSGLNSSSKALDVISNNVANASTVGFKASNTIFADMYASAMTGGTSSLQVGIGSK 61 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 ++ V S G+ +T LD A+ G+ +F L G I +R+G+F V +G++ Sbjct: 62 VAAVTQ-----SFTQGNLTATNNPLDMAINGNGFFRLSRSDGSIAYSRNGQFDVDRNGNI 116 Query: 115 VSASGK 120 V+A+G+ Sbjct: 117 VNATGE 122 >gi|66046706|ref|YP_236547.1| flagellar basal body rod protein:protein of unknown function DUF1078:flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] gi|63257413|gb|AAY38509.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] Length = 582 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +GA ++ + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E + IS+G LD ++G+ +F + + TR G F Sbjct: 62 ASVQQNFNQGE--TVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAF 107 >gi|297585403|ref|YP_003701183.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297143860|gb|ADI00618.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 277 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 81 DFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D L G F +++ G I TR+G F V DG L +G Y VLD PI++ +D Sbjct: 108 DSGLPGMLAFQIQNDDGDIRYTRNGDFTVDSDGFLTMGTGHY-VLDTDGAPIEVGNED-- 164 Query: 140 FNVGEKGEISQKGKVIATMGLYSVDM--SQGFVRRENSGI-----SPNIPPTPLEDLSGV 192 F V + GEI +G + + G + +E SG I D Sbjct: 165 FRVNQNGEIFTDDADEVFLGQIDIMLIPDPGLLVKEGSGFLRYDGDEAIASAIGNDDVLY 224 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +++G+LE SN ++ M QM+ + F + ++ ++S+ A+ +I Sbjct: 225 QLQQGYLERSNVDAGQTMTQMMAALRNFEANQKVLQAYDQSLERAVNDIG 274 >gi|188579925|ref|YP_001923370.1| flagellar hook protein FlgE [Methylobacterium populi BJ001] gi|179343423|gb|ACB78835.1| flagellar basal body FlaE domain protein [Methylobacterium populi BJ001] Length = 402 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 24/125 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKI 56 G++ A R+STVA+N+ N T G++ +FS ++ GA++ + + + Sbjct: 10 GVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRSV 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD-GSL 114 S E G ST ++ D A++G+ +F + G +TR G F V G+L Sbjct: 70 S-----------EGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNL 118 Query: 115 VSASG 119 V+A G Sbjct: 119 VNAGG 123 >gi|187925761|ref|YP_001897403.1| hypothetical protein Bphyt_3791 [Burkholderia phytofirmans PsJN] gi|187716955|gb|ACD18179.1| protein of unknown function DUF1078 domain protein [Burkholderia phytofirmans PsJN] Length = 503 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 71/136 (52%), Gaps = 22/136 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKND--IDQKISFVASGKEYLSKEVG 71 L + +N++N +TVGF++ +F++ V A+ N I K++ V ++ S+ G Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLAEV---QQQFSQ--G 71 Query: 72 SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------KYP 122 + ST LD A+ G+ +F L + ++ +R+G F++ +G + +A G Sbjct: 72 TITSTNQALDVAINGNGFFQLSNNGSMVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSG 131 Query: 123 VLDMA-SVPIQIPQKD 137 +++ A +VP+ +P + Sbjct: 132 IINTAQTVPLTVPTAN 147 >gi|257866386|ref|ZP_05646039.1| flagellar hook protein [Enterococcus casseliflavus EC30] gi|257873098|ref|ZP_05652751.1| flagellar hook protein [Enterococcus casseliflavus EC10] gi|257875999|ref|ZP_05655652.1| flagellar hook protein [Enterococcus casseliflavus EC20] gi|257800344|gb|EEV29372.1| flagellar hook protein [Enterococcus casseliflavus EC30] gi|257807262|gb|EEV36084.1| flagellar hook protein [Enterococcus casseliflavus EC10] gi|257810165|gb|EEV38985.1| flagellar hook protein [Enterococcus casseliflavus EC20] Length = 312 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 15/134 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S G++ L+ ++ V++N++N +TVGF++ +V F +++ ++ Sbjct: 15 MLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLG 74 Query: 55 -----KISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGR 105 +I V +G VG+ STG +DF + G +F ++ P TRDG Sbjct: 75 GINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGA 134 Query: 106 FKVTDDGSLVSASG 119 F +G+L ++ G Sbjct: 135 FVRDSNGTLTNSDG 148 >gi|330899403|gb|EGH30822.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 581 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +GA ++ + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E + IS+G LD ++G+ +F + + TR G F Sbjct: 62 ASVQQNFNQGE--TVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAF 107 >gi|308050024|ref|YP_003913590.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] gi|307632214|gb|ADN76516.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] Length = 407 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ + Q L+T+++N++N T GFR + +F+ V + + + Sbjct: 2 SFNIALSGLRSTSQDLNTISNNIANVSTPGFRGSRTEFASVYAGGQGGGVAVANVSQN-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G + TG ELD A+ G +F + TR G F DG +V + G Sbjct: 60 ---FNTGGDVLYTGRELDMAISGSGFFMTNNQGTTTYTRSGMFAQDKDGYVVDSHG 112 >gi|299534778|ref|ZP_07048108.1| flagellar basal-body rod protein flgG [Lysinibacillus fusiformis ZC1] gi|298729866|gb|EFI70411.1| flagellar basal-body rod protein flgG [Lysinibacillus fusiformis ZC1] Length = 322 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 28/169 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N +T+GF+ +V F +++ + + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTIGFKKGRVNFKDLMSQTQAGASAATATRG 60 Query: 59 ------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG----------- 97 V G + + + GS TG LD +EGD +F + G Sbjct: 61 GVNPQQVGLGAQLAAIDTIHGGGSLQGTGRGLDLGIEGDGFFMVADANGAPDPDSGFIDE 120 Query: 98 -----IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 + TR+G F + +G LV+A GKY V A I + D+ N Sbjct: 121 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGDEIVMEADDDGIN 169 >gi|300114799|ref|YP_003761374.1| fagellar hook-basal body protein [Nitrosococcus watsonii C-113] gi|299540736|gb|ADJ29053.1| fagellar hook-basal body protein [Nitrosococcus watsonii C-113] Length = 425 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 +FN L+ A L A N++N T GF+ + +F+++ + + + V SG Sbjct: 2 AFNTSLSGLNAASSDLDVTAHNIANASTTGFKRSRSEFADIFAV--SSFGRSQTAVGSGV 59 Query: 63 ---KEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLV 115 K E G+ T LD A+ G FAL SP + ++ +R G F V +G +V Sbjct: 60 LLNKTAQQFEQGNLDFTQNSLDLAISGQGLFAL-SPSLNDKDLVYSRAGAFSVDKEGYVV 118 Query: 116 SASGKY 121 ++SG+Y Sbjct: 119 NSSGQY 124 >gi|260597445|ref|YP_003210016.1| flagellar hook protein FlgE [Cronobacter turicensis z3032] gi|260216622|emb|CBA29917.1| Flagellar hook protein flgE [Cronobacter turicensis z3032] Length = 410 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 22/136 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ V F+++ K + K++ + +++ G Sbjct: 12 AASTNLDVIGNNIANSATYGFKSGSVSFADMFAGSKAGLGVKVAGI-------TQDFGDG 64 Query: 74 IST--GTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVS----------ASGK 120 ++T G +LD A+ + +F L +S G+ +R+G+FK+ + +LV+ A+G Sbjct: 65 VTTNTGRKLDVAISQNGFFRLLDSNGGVFYSRNGQFKLDEKSNLVNMQGMQVTGYPATGT 124 Query: 121 YPVLDMAS--VPIQIP 134 P + + +P+ IP Sbjct: 125 PPTVQQGADPIPLTIP 140 >gi|32477561|ref|NP_870555.1| flagellar hook protein FlgE [Rhodopirellula baltica SH 1] gi|32448115|emb|CAD77632.1| flagellar hook protein FlgE [Rhodopirellula baltica SH 1] gi|327543123|gb|EGF29559.1| flagellar hook protein FlgE [Rhodopirellula baltica WH47] Length = 811 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 106/229 (46%), Gaps = 44/229 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--------VGAIKND- 51 +Q++ L A E ++ + +N++N TVGF++ F+ G N+ Sbjct: 3 LQSALTTALTGLSAAETQIDVIGNNLANAQTVGFKSSDAVFATQFLQTLSLGAGPSANNG 62 Query: 52 --------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTR 102 + +++ +A+ + E+ S S D A++GD +F +++ G + TR Sbjct: 63 GTNPRQIGLGVQVAEIAANHNQGTIEISSSSS-----DLAIQGDGFFQVQAADGEKLYTR 117 Query: 103 DGRFKVTDDGSLVSASG----------KYPVLDMASVPIQIPQKDEIF-----NVGEKGE 147 +G FK+ D LV+A+G ++ + + VP+ +P + NV +G Sbjct: 118 NGIFKLNSDAELVNATGQRLLGYGIDEQFRLQTDSLVPLSVPLGTKTVAKATENVSFEGT 177 Query: 148 ISQKGKVIATMG--LYSVDMSQGFVRREN-SGISPNIPPTPLEDLSGVT 193 ++ +G V AT G + S+ + V R + SG+S I +P+ D + VT Sbjct: 178 LTPEGDV-ATAGQVIESLHLGDSQVPRPDASGVS--IESSPIADHTSVT 223 >gi|91785634|ref|YP_560840.1| putative flagellar hook protein FlgE [Burkholderia xenovorans LB400] gi|91689588|gb|ABE32788.1| putative flagellar hook protein FlgE [Burkholderia xenovorans LB400] Length = 503 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 L + +N++N +TVGF++ +F++ V A+ N I +++ G+ Sbjct: 17 LDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLADVQQQF---SQGTI 73 Query: 74 ISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------KYPVL 124 ST LD A+ G+ +F L + ++ +R+G F++ +G + +A G ++ Sbjct: 74 TSTNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGII 133 Query: 125 DMA-SVPIQIPQKD 137 + A +VP+ +P + Sbjct: 134 NTAQTVPLTVPTAN 147 >gi|325474542|gb|EGC77728.1| flagellar hook protein FlgE [Treponema denticola F0402] Length = 463 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ + R+ + +N++N +T GF+ +V F ++ I Q++S A Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDL-------ISQQLSGAA 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 E L KEVG + +TG D A++G+ +F L+ T Sbjct: 54 RPTEELGGVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F + +G+LV+ Sbjct: 114 RAGAFGIDKEGTLVN 128 >gi|330953723|gb|EGH53983.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 581 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +GA ++ + + Sbjct: 2 SFNTAISGIQAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E + IS+G LD ++G+ +F + + TR G F Sbjct: 62 ASVQQNFNQGE--TVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAF 107 >gi|302389667|ref|YP_003825488.1| fagellar hook-basal body protein [Thermosediminibacter oceani DSM 16646] gi|302200295|gb|ADL07865.1| fagellar hook-basal body protein [Thermosediminibacter oceani DSM 16646] Length = 404 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 15/142 (10%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------------KNDIDQKISFVASGKE 64 ++ + +N++N +TVG++ +V F + + N + + + + Sbjct: 18 KMDVIGNNIANVNTVGYKKSRVTFQDTLSQTMRGASSAQGNRGGTNPMQIGLGMTIAAID 77 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 + S +TG D A+EGD +F L +G TR G F + G+LV+ + + V+ Sbjct: 78 TIHTPT-SLEATGNMTDLAIEGDGFFILSDGQGYYYTRAGNFGFDEQGNLVNTANGFKVM 136 Query: 125 DMASVPIQIPQKDEIFNVGEKG 146 + PQ + N+ +KG Sbjct: 137 GWQDSSSKTPQDIKPINI-QKG 157 >gi|317129200|ref|YP_004095482.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] gi|315474148|gb|ADU30751.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] Length = 397 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 16/134 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKIS--FV 59 G+ + + +L V +N++N +T GF+ +V F ++V A D I+ V Sbjct: 8 GIGGMKSFQTKLDVVGNNIANVNTSGFKKGRVTFQDLVSQQMSGAATPTDNRGGINPMQV 67 Query: 60 ASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 G S + GS +TG +LD + GD +F + +R G F + ++G LV Sbjct: 68 GLGTSMGSIDTIHTQGSLQTTGRDLDIGITGDGFFIVNDGGQSYYSRAGNFYLDENGDLV 127 Query: 116 SASG----KYPVLD 125 +A+G Y V+D Sbjct: 128 NANGLRVQGYSVVD 141 >gi|42528268|ref|NP_973366.1| flagellar hook protein FlgE [Treponema denticola ATCC 35405] gi|4426943|gb|AAD20617.1| flagellar hook protein FlgE [Treponema denticola] gi|41819538|gb|AAS13285.1| flagellar hook protein FlgE [Treponema denticola ATCC 35405] Length = 463 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ + R+ + +N++N +T GF+ +V F ++ I Q++S A Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDL-------ISQQLSGAA 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 E L KEVG + +TG D A++G+ +F L+ T Sbjct: 54 RPTEELGGVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F + +G+LV+ Sbjct: 114 RAGAFGIDKEGTLVN 128 >gi|71282391|ref|YP_268224.1| flagellar basal body rod protein FlgG [Colwellia psychrerythraea 34H] gi|71148131|gb|AAZ28604.1| flagellar basal-body rod protein FlgG [Colwellia psychrerythraea 34H] Length = 262 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 76/156 (48%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISFV 59 GL AQ + ++ +++N++N T+GF+ + F +++ G D + + Sbjct: 11 GLDAQ---TKDIAVISNNLANASTIGFKKSRAVFEDLLYQNINQPGGRTAQDTEAPSGLM 67 Query: 60 --ASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 A K ++++ G I++ LD ++G+ +F ++ P G +R+G+F + D+G+ Sbjct: 68 LGAGTKVVATQKIHTQGDMITSDNALDLMIQGEGFFEIQMPDGSSAYSRNGQFTMDDEGN 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V+ Y M + IP+ V + GE+S Sbjct: 128 MVTPGAGY----MIQPQVTIPEDALSIIVSQDGEVS 159 >gi|89095665|ref|ZP_01168559.1| flagellar basal-body rod protein [Bacillus sp. NRRL B-14911] gi|89089411|gb|EAR68518.1| flagellar basal-body rod protein [Bacillus sp. NRRL B-14911] Length = 279 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 44/261 (16%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVK---FSE------------VVGAIKNDIDQKIS 57 L+ ++R + +NM+N++T GF+ + F E V +K ++++I Sbjct: 13 LSQQRRTEMLTNNMANSNTPGFKADQSSMRAFPEMLLQSAGQLEIPVQNRLKMPLNKEIG 72 Query: 58 FVASGKEYLSKEVGSFIS-----TGTELDFAL-------------EGDAWFALE-SPRGI 98 + +G Y+ + +F+ TG D AL +F + + G Sbjct: 73 SINTGV-YMQENTPNFLQGDLRETGQNTDLALVDITMPEDEETGISASVFFKVSGADGGT 131 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 TR+G F + +G L +ASG Y VLD IQ+ + F V G+I+ + A + Sbjct: 132 RYTRNGDFTLDGEGFLTTASGMY-VLDGQDNRIQL--GSDRFTVSNAGQITGENGETAQL 188 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQM 213 G + + + +E G+ PL + +G +++GFLE SN ++ M M Sbjct: 189 G-FGFSENPAELIKEGDGLFRTEDGAPLAEAVDNPEAGFALQQGFLESSNVDASRTMTDM 247 Query: 214 IHLTQKFNSITTLIDENEKSM 234 + + F + ++ ++SM Sbjct: 248 MTAYRAFEANQKVLQAYDRSM 268 >gi|15596277|ref|NP_249771.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1] gi|107100525|ref|ZP_01364443.1| hypothetical protein PaerPA_01001550 [Pseudomonas aeruginosa PACS2] gi|218892956|ref|YP_002441825.1| flagellar hook protein FlgE [Pseudomonas aeruginosa LESB58] gi|254234216|ref|ZP_04927539.1| flagellar hook protein FlgE [Pseudomonas aeruginosa C3719] gi|254239438|ref|ZP_04932760.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 2192] gi|9946996|gb|AAG04469.1|AE004539_11 flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1] gi|126166147|gb|EAZ51658.1| flagellar hook protein FlgE [Pseudomonas aeruginosa C3719] gi|126192816|gb|EAZ56879.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 2192] gi|218773184|emb|CAW28996.1| flagellar hook protein FlgE [Pseudomonas aeruginosa LESB58] Length = 462 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 20/116 (17%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A L+ +N++N TVGF+ + +F++V A S + SG Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAA---------SVLGSGS 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G+ ST + LD A+ G+ +F + I TR G F Sbjct: 53 NPQGSGVLLSDVSQMFKQGNIDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNT 108 >gi|293395585|ref|ZP_06639868.1| flagellar basal-body rod protein FlgG [Serratia odorifera DSM 4582] gi|291421904|gb|EFE95150.1| flagellar basal-body rod protein FlgG [Serratia odorifera DSM 4582] Length = 260 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F++ Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGYFQVMLPDGSQAYTRDGSFQIDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIATM-- 158 +G LV+ASG I IP VG G +S Q G++ T Sbjct: 125 NGQLVTASGF-----QVQPAITIPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFI 179 Query: 159 ---GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL SV + + E+SG +PN TP + +G+ + +G++E SN N E+ MI Sbjct: 180 NDSGLESVGENL-YQETESSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKF 220 + + + Sbjct: 236 VQRAY 240 >gi|289679027|ref|ZP_06499917.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 377 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +GA ++ + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + E + IS+G LD ++G+ +F + + TR G F Sbjct: 62 ASVQQNFNQGE--TVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAF 107 >gi|149174025|ref|ZP_01852653.1| flagellar basal-body rod protein FlgG [Planctomyces maris DSM 8797] gi|148847005|gb|EDL61340.1| flagellar basal-body rod protein FlgG [Planctomyces maris DSM 8797] Length = 542 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 31/235 (13%) Query: 18 RLS--TVADNMSNTDTVGFRTIKVKFS----EVVGAIKNDIDQKISFVASG------KEY 65 RLS + +N++N T+GF+ + V+F E V ++ + +A G + Sbjct: 276 RLSRDVIVNNIANAGTIGFKRLYVEFESLPYEYVKTPASEEAETEPPIAVGMGSQVLQTR 335 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 +S+ G + TG ELD A+EG + + TR GR +D L ++ L Sbjct: 336 ISQTSGELLKTGRELDIAIEGQGFLQVRLGETTAFTRTGRLIFDEDRRLCIRGSQHNYLI 395 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIA---TMGLYSV----DMSQGFVRRENSGIS 178 + I++P + + E G ++ +A T+G + D S+ F R S + Sbjct: 396 VPE--IKLPAEAHSIQISESGIVTALLADVAEEVTVGELQIACFTDPSELFPR--ESCLF 451 Query: 179 PNIPP-------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 P TP +G+ V+ G LE SN + E+ Q+ + Q+ +++ T+ Sbjct: 452 TTTPRAGAARVLTPGAKGAGL-VRSGVLEASNVSITEELEQLSLIKQRLDALKTV 505 >gi|116049009|ref|YP_792189.1| flagellar hook protein FlgE [Pseudomonas aeruginosa UCBPP-PA14] gi|296390556|ref|ZP_06880031.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PAb1] gi|313106035|ref|ZP_07792294.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 39016] gi|115584230|gb|ABJ10245.1| flagellar hook protein FlgE [Pseudomonas aeruginosa UCBPP-PA14] gi|310878796|gb|EFQ37390.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 39016] Length = 462 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 20/116 (17%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A L+ +N++N TVGF+ + +F++V A S + SG Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAA---------SVLGSGS 52 Query: 64 EYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G+ ST + LD A+ G+ +F + I TR G F Sbjct: 53 NPQGSGVLLSDVSQMFKQGNIDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNT 108 >gi|33601541|ref|NP_889101.1| flagellar hook protein FlgE [Bordetella bronchiseptica RB50] gi|33575977|emb|CAE33056.1| flagellar hook protein FlgE [Bordetella bronchiseptica RB50] Length = 473 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 17/163 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F L+ A Q L + +N++N+ TVGF++ F++V + + + K+S + Sbjct: 3 FGQALSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQ--- 59 Query: 65 YLSKEVGSFISTGTELDFALEGDAWF--ALESPRGIILTRDGRFKVTDDGSLVSASG--- 119 VG+ T E D A++G F + G+ +R+G F V + +V+A G Sbjct: 60 --RFTVGNISMTNGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYVVNAQGFRL 117 Query: 120 -KYPVLDMASVPI--QIPQKD----EIFNVGEKGEISQKGKVI 155 YP + + P+ Q+P + G +G ++ K+I Sbjct: 118 TGYPAGAVGAQPVDLQLPPGNIAPRPASTAGLQGNLNANAKLI 160 >gi|331007438|ref|ZP_08330615.1| Flagellar basal-body rod protein flgF [gamma proteobacterium IMCC1989] gi|330418745|gb|EGG93234.1| Flagellar basal-body rod protein flgF [gamma proteobacterium IMCC1989] Length = 246 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 19/227 (8%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 ++N++N +T GFR+ + + +G + +F + + G+ I TG +LD Sbjct: 23 SNNLANANTTGFRS-DFEQARSMGVYYGEGLPTRAFALTETPQTNFAEGALIQTGRDLDV 81 Query: 83 ALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A++G + A+++ G TR G V D ++ PV+ A P+ IP+ ++ Sbjct: 82 AVKGRGFIAVQAADGREAYTRAGSLYV-DSAGVLRTGNNLPVMGNAG-PMAIPEFQKL-E 138 Query: 142 VGEKGEISQKGKVIATMGLYSVDM------SQGFVRRENSGISPNIPPTPLEDLS---GV 192 +G G +S GK A L VD + +++ G+ ED+ V Sbjct: 139 IGLDGIVSIVGKGEAPDALAQVDQIKLVNPDEALLKKGADGLL-----YAEEDVGIDVDV 193 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ GFLE SN N + E+ ++ L +++ L+ E++ + R Sbjct: 194 SLVSGFLEGSNVNPVNELTHILTLARQYEMSIKLMKTTEENSQASAR 240 >gi|325567523|ref|ZP_08144190.1| flagellar hook-basal body protein [Enterococcus casseliflavus ATCC 12755] gi|325158956|gb|EGC71102.1| flagellar hook-basal body protein [Enterococcus casseliflavus ATCC 12755] Length = 298 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 19/136 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--------------VG 46 M S G++ L+ ++ V++N++N +TVGF++ +V F ++ +G Sbjct: 1 MLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLG 60 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRD 103 I + Q V +G VG+ STG +DF + G +F ++ P TRD Sbjct: 61 GI--NATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRD 118 Query: 104 GRFKVTDDGSLVSASG 119 G F +G+L ++ G Sbjct: 119 GAFVRDSNGTLTNSDG 134 >gi|188576756|ref|YP_001913685.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576947|ref|YP_001913876.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521208|gb|ACD59153.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521399|gb|ACD59344.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 407 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ Sbjct: 62 SNVAQQF---SQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQ 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|308068661|ref|YP_003870266.1| flagellar basal-body rod protein flgG (Distal rod protein) [Paenibacillus polymyxa E681] gi|305857940|gb|ADM69728.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Paenibacillus polymyxa E681] Length = 272 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 35/210 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M S G++ + +L + +N++N +T GF++ +V F +++ G Sbjct: 1 MLRSMYSGVSGMKGFQTKLDVIGNNIANVNTTGFKSSRVMFKDILSQTSSGASAPGDAAG 60 Query: 51 DIDQKISFVAS--GKEYLSKEVGSFISTGTELDFALEGDAWFAL------ESPRGIILTR 102 I+ K + S G GS ++T D + GD +F + E P LTR Sbjct: 61 GINAKQVGLGSTVGSIDTLHLPGSAMTTNNPTDLRINGDGFFLVKMTGDQEVP---YLTR 117 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G F V + LV++ G + PIQ+ F++ + G I Q+ Sbjct: 118 AGDFHVDGNRQLVTSDGLFVADSGGGTPIQLNDLTTSFSISQDGTIVQQ----------- 166 Query: 163 VDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 +S G V + G++ I P LE + G Sbjct: 167 --LSDGTVDNQTKVGVTKVINPEGLEKIGG 194 >gi|239906284|ref|YP_002953024.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] gi|239796149|dbj|BAH75138.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] Length = 518 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKISFVASGKE 64 G++ L Q ++T +N++N +TVG+++ ++ F++++ + +D Q + V G Sbjct: 7 GVSGLLTYSQGIATTGNNLANVNTVGYKSSRMLFADMISTMAGGTSDGSQIGTGVQVGSI 66 Query: 65 YLSKEVGSFISTGTELDFALEGD-AWFALESPRG--IILTRDGRFKVTDDGSLVSASG 119 L EVGS D A+ G+ +F ++ TR G F +G+L+SA+G Sbjct: 67 ALQTEVGSLQDASNSTDLAITGERGYFVVKDAANDKTYYTRAGDFNFDKNGNLMSATG 124 >gi|169827129|ref|YP_001697287.1| flagellar basal-body rod protein flgG [Lysinibacillus sphaericus C3-41] gi|168991617|gb|ACA39157.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Lysinibacillus sphaericus C3-41] Length = 322 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 28/169 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N +TVGF+ +V F +++ + + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTVGFKKGRVLFKDLMSQTQAGASAATATRG 60 Query: 59 ------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG----------- 97 V G + + + GS TG LD +EGD +F + G Sbjct: 61 GVNPQQVGLGSQLAAIDTIHGGGSLQGTGRGLDLGIEGDGFFMVADANGAPDPDSGFIGE 120 Query: 98 -----IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 + TR+G F + +G LV+A GKY V A I + D+ N Sbjct: 121 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGEDIVMEADDDGIN 169 >gi|285018209|ref|YP_003375920.1| flagellar hook protein flge [Xanthomonas albilineans GPE PC73] gi|283473427|emb|CBA15932.1| probable flagellar hook protein flge [Xanthomonas albilineans] Length = 407 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 FN L+ A L+ A+N++N +T GF++ + +F++ G +N + + Sbjct: 3 FNTSLSGIKAANTDLNVTANNIANVNTTGFKSSRAEFADQFTVSGYGLARNAVGSGVRVS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ G+ TG LD A+ G +F L + + +R G F+ +G +V+ G Sbjct: 63 NVAQQF---SQGNIDPTGRNLDLAISGSGFFTLSNNGARVYSRAGNFQTDANGYVVNPQG 119 >gi|213161842|ref|ZP_03347552.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 232 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 37/230 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 S+ + ++ ++SG +PN TP + +G+ + +G++E SN N E+ Sbjct: 185 ESIGENL-YIETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEEL 230 >gi|167585194|ref|ZP_02377582.1| flagellar hook protein FlgE [Burkholderia ubonensis Bu] Length = 269 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 72/144 (50%), Gaps = 16/144 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISF---VASGK 63 GL+ L + +N++N +TVGF++ +F+++ ++ ++ +I ++S + Sbjct: 6 GLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTRISSVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK--- 120 + + G+ +T LD A+ G+ +F + + + +RDG F+ +G +V + G+ Sbjct: 66 QSFGQ--GTINTTNNALDVAINGNGFFQMSNNGVVTYSRDGTFQRDKNGFIVDSQGRNLM 123 Query: 121 -YP------VLDMASVPIQIPQKD 137 Y + A+VP+Q P + Sbjct: 124 GYNATAGGVINTAATVPLQAPTAN 147 >gi|22126388|ref|NP_669811.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM 10] gi|45441407|ref|NP_992946.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|108807175|ref|YP_651091.1| flagellar basal-body rod protein FlgG [Yersinia pestis Antiqua] gi|108812481|ref|YP_648248.1| flagellar basal-body rod protein FlgG [Yersinia pestis Nepal516] gi|145598608|ref|YP_001162684.1| flagellar basal-body rod protein FlgG [Yersinia pestis Pestoides F] gi|149366249|ref|ZP_01888284.1| flagellar basal-body rod protein FlgG [Yersinia pestis CA88-4125] gi|162420398|ref|YP_001606475.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola] gi|165925935|ref|ZP_02221767.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165938754|ref|ZP_02227309.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|166010911|ref|ZP_02231809.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166210683|ref|ZP_02236718.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|167401156|ref|ZP_02306659.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419985|ref|ZP_02311738.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425757|ref|ZP_02317510.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467493|ref|ZP_02332197.1| flagellar basal-body rod protein FlgG [Yersinia pestis FV-1] gi|218928924|ref|YP_002346799.1| flagellar basal-body rod protein FlgG [Yersinia pestis CO92] gi|229896244|ref|ZP_04511414.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|229897179|ref|ZP_04512335.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897905|ref|ZP_04513056.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229902863|ref|ZP_04517980.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|270486643|ref|ZP_06203717.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294504028|ref|YP_003568090.1| flagellar basal-body rod protein FlgG [Yersinia pestis Z176003] gi|21959374|gb|AAM86062.1|AE013853_10 cell-distal portion of basal-body rod [Yersinia pestis KIM 10] gi|45436267|gb|AAS61823.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|108776129|gb|ABG18648.1| flagellar basal-body rod protein FlgG [Yersinia pestis Nepal516] gi|108779088|gb|ABG13146.1| flagellar basal-body rod protein FlgG [Yersinia pestis Antiqua] gi|115347535|emb|CAL20444.1| flagellar basal-body rod protein FlgG [Yersinia pestis CO92] gi|145210304|gb|ABP39711.1| flagellar basal-body rod protein FlgG [Yersinia pestis Pestoides F] gi|149292662|gb|EDM42736.1| flagellar basal-body rod protein FlgG [Yersinia pestis CA88-4125] gi|162353213|gb|ABX87161.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola] gi|165913368|gb|EDR31990.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|165922139|gb|EDR39316.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165990255|gb|EDR42556.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166207863|gb|EDR52343.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|166961680|gb|EDR57701.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049545|gb|EDR60953.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055156|gb|EDR64953.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680310|gb|EEO76409.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|229688946|gb|EEO81011.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229693516|gb|EEO83565.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701167|gb|EEO89196.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|262361786|gb|ACY58507.1| flagellar basal-body rod protein FlgG [Yersinia pestis D106004] gi|262366078|gb|ACY62635.1| flagellar basal-body rod protein FlgG [Yersinia pestis D182038] gi|270335147|gb|EFA45924.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294354487|gb|ADE64828.1| flagellar basal-body rod protein FlgG [Yersinia pestis Z176003] gi|320015465|gb|ADV99036.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 232 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ T D A++G+ +F ++ P G TRDG F+V +G LV+A G + V ++ Sbjct: 56 GNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTAGG-FQVQPAITI 114 Query: 130 PIQIPQ----KDEIFNVGEKGEIS--QKGKVIATM-----GLYSVDMSQGFVRRENSGIS 178 P +D I +V +G+ + Q G++ T GL SV + + S + Sbjct: 115 PANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESV--GENLYQETASSGA 172 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 PN TP + G+ + +G++E SN N E+ MI TQ+ I + ML+ + Sbjct: 173 PN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQRAYEINSKAVSTSDQMLQKL 229 Query: 239 RNI 241 + Sbjct: 230 AQL 232 >gi|115523179|ref|YP_780090.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisA53] gi|115517126|gb|ABJ05110.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris BisA53] Length = 262 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 25/160 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDI 52 G++AQ + + +A+N++N +T ++ + +F+++ GA+ Sbjct: 10 GMSAQ---QLNVEVIANNIANINTTSYKRSRAEFTDLFYQIDRMQGVPNRVGEGAVPEGA 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + ++ L + G+ TG D A+ G WF + P G + TR G F D Sbjct: 67 KLGLGVRSAAVRKLHLQ-GALAQTGNAYDLAVNGRGWFQVVGPNGDTLYTRAGAFNTNAD 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 LV+A G Y V I IP+ V E G++ K Sbjct: 126 AQLVTADG-YKV----DPTILIPEGTAQVTVNESGQVYAK 160 >gi|4580018|gb|AAD24206.1|AF049342_4 flagellar hook protein FlgE [Treponema denticola ATCC 33520] Length = 237 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 26/137 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ + R+ + +N++N +T GF+ +V F ++ I Q++S A Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDL-------ISQQLSGAA 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 E L KEVG + +TG D A++G+ +F L+ T Sbjct: 54 RPTEELGGVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYT 113 Query: 102 RDGRFKVTDDGSLVSAS 118 R G F + +G+LV+ + Sbjct: 114 RAGAFGIDKEGTLVNPA 130 >gi|89072314|ref|ZP_01158893.1| putative flagellar basal-body rod protein [Photobacterium sp. SKA34] gi|89051846|gb|EAR57298.1| putative flagellar basal-body rod protein [Photobacterium sp. SKA34] Length = 243 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 15/205 (7%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +VK + GA D + + V + + G I TG L Sbjct: 23 SNNLSNADTAGFRADMERVKSIPLQGA---GFDGR-TMVVTNSAATRFDAGDVIKTGRAL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ GD +F +++ G TR G +V D G ++ +G +P++ + +P+ + Sbjct: 79 DIAINGDGFFTVQTVAGNEAYTRAGNIRVDDQG-MMRVNG-FPLMSEGEALV-LPEHQAV 135 Query: 140 FNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK 195 ++ +KG +S G + L V+ +++++ G+ + V + Sbjct: 136 -DISDKGVVSIVPLGGGAELEVGQLKLVNPEFNQLQKQSDGLLHPVNDQFFAQDPSVAMT 194 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKF 220 G LE SN +++ E+ ++ LT+ F Sbjct: 195 AGHLEGSNVSAINELVSVMSLTRNF 219 >gi|152997580|ref|YP_001342415.1| flagellar basal-body rod protein FlgG [Marinomonas sp. MWYL1] gi|150838504|gb|ABR72480.1| flagellar basal-body rod protein FlgG [Marinomonas sp. MWYL1] Length = 261 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 34/255 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---------IDQKIS 57 A++++L+ VA+N++N T F+ + F +++ G + + + Sbjct: 14 AMDKQLNVVANNLANVSTTAFKKDRAVFEDLMYKTVRAPGGLSAQNAELPSGLQLGTGVK 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 A+ K++ + G + T +LD A++G + + P G I TR+G ++ G L + Sbjct: 74 VGATQKDFSN---GDYNMTDRQLDIAIQGKGFLQVLQPDGTIAYTRNGSLQLNSQGQLAT 130 Query: 117 ASGKY--PVLDMASVPIQIP-QKDEIFNVGEKG--EISQKGKV-----IATMGLYSVDMS 166 + G P + + I+I +D I +V + G + Q G + I GL S + Sbjct: 131 SGGLVLEPGIQIDPDVIEIMIAEDGIVSVRKNGDADAQQVGAINIAGFINPTGLSSAGQN 190 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 F SG P + P D G T+ +G LE SN NS+ E+ MI + + + + Sbjct: 191 L-FTETNASG--PPLVGVPGTDSLG-TIAQGMLEASNVNSIEELVNMITTQRAYEMNSKV 246 Query: 227 IDENEKSMLEAIRNI 241 I + M AI+ + Sbjct: 247 IASADGMMSFAIQQL 261 >gi|24112486|ref|NP_706996.1| flagellar basal body rod protein FlgG [Shigella flexneri 2a str. 301] gi|30062614|ref|NP_836785.1| flagellar basal body rod protein FlgG [Shigella flexneri 2a str. 2457T] gi|24051372|gb|AAN42703.1| flagellar basal body rod protein flgG [Shigella flexneri 2a str. 301] gi|30040860|gb|AAP16591.1| flagellar basal body rod protein flgG [Shigella flexneri 2a str. 2457T] gi|281600496|gb|ADA73480.1| Flagellar basal body rod protein flgG [Shigella flexneri 2002017] gi|313650470|gb|EFS14877.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2a str. 2457T] gi|332758238|gb|EGJ88561.1| flagellar basal-body rod protein FlgG [Shigella flexneri 4343-70] gi|332759659|gb|EGJ89964.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2747-71] gi|332761424|gb|EGJ91708.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-671] gi|332767686|gb|EGJ97879.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2930-71] gi|333005399|gb|EGK24917.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-218] gi|333019426|gb|EGK38709.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-304] Length = 260 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 37/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G RDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYIRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGL 160 +G LV+A G P + + + + I +D + +V ++G+ + Q G++ T GL Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 185 ESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 240 >gi|307131607|ref|YP_003883623.1| flagellar basal-body rod protein flgG [Dickeya dadantii 3937] gi|306529136|gb|ADM99066.1| Flagellar basal-body rod protein flgG [Dickeya dadantii 3937] Length = 260 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +++N++N T GF+ + F +++ GA ++ Sbjct: 11 GLNAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + + VA+ + + GSF TG D A++G +F + P G TRDG F+ Sbjct: 68 LGTGVRPVATERIHTQ---GSFSETGNVKDLAIKGAGFFQVLMPDGTTSYTRDGSFQQDS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIAT-MGLYSVDMSQ 167 +G LV++SG I IP VG G ++Q+G+ +G ++ M Sbjct: 125 NGQLVTSSGF-----QVQPAITIPANSSNLTVGRDGVVTVTQQGQTAPVQIGQLNLAMFI 179 Query: 168 GFVRRENSG-------ISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQK 219 EN G S P L+G + + F+E SN N E+ MI TQ+ Sbjct: 180 NEAGLENLGENLYAETASSGAPTQSTPGLNGAGLIYQKFVETSNVNVAEELVSMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + + ML+ + + Sbjct: 239 AYEINSKAISSTDQMLQKLTQL 260 >gi|51599026|ref|YP_073214.1| flagellar hook-basal body complex protein [Borrelia garinii PBi] gi|51573597|gb|AAU07622.1| flagellar hook-basal body complex protein [Borrelia garinii PBi] Length = 282 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 22/135 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKNDIDQKISF-------- 58 + +A +L V++N++N D +G++ +I+ F E++ ND D F Sbjct: 10 SGMMAERHKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLND-DGLYKFPKGHLETA 68 Query: 59 -----VASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +G E Y E G +T LD AL +F +++ G TR+G F + Sbjct: 69 PIVGKLGTGVEENEIYTLFEQGPLKTTSNPLDLALTDQGFFVIQTSDGERYTRNGSFTIG 128 Query: 110 DDGSLVSASGKYPVL 124 +G LV+ SG +PVL Sbjct: 129 KEGILVTKSG-FPVL 142 >gi|289804043|ref|ZP_06534672.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 179 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 15/161 (9%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--KYPVLDMA 127 G+ T D A++G +F + P G TRDG F+V +G LV+A G P + + Sbjct: 3 GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIP 62 Query: 128 SVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGLYSVDMSQGFVRRENSGISP 179 + + I +D + +V ++G+ + Q G++ T GL S+ + ++ ++SG +P Sbjct: 63 ANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL-YIETQSSG-AP 120 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 N TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 121 N-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 159 >gi|170741836|ref|YP_001770491.1| flagellar basal body rod protein FlgG [Methylobacterium sp. 4-46] gi|168196110|gb|ACA18057.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] Length = 262 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 111/262 (42%), Gaps = 44/262 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQK-------- 55 A QL LE +A+N++N +T GF+ + +F++++ + N Q+ Sbjct: 13 AQQLNLE----VIANNVANLNTTGFKGARAEFTDLLYQAERQQGVPNQTGQEAVPEGALL 68 Query: 56 -ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + A+ L ++ G T LD A+ G +F + +P G + TR G F + G Sbjct: 69 GLGVRAAAIRNLHRQ-GPLAQTSNNLDLAINGRGYFQVTNPNGEVNYTRAGSFNKSSTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 LV+ G V++ A I P + + G++ K AT L F Sbjct: 128 LVTLEGY--VVEPA---ILFPANTVDVVINQSGQVYAKVDGQATPQLLGQLSIANFANE- 181 Query: 174 NSGISP---------NIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKF 220 SG+ P P+ ++G T V++G+LE SN + + E+ +I + F Sbjct: 182 -SGLEPLGNGLYRETAASGAPVTGVAGDTGFGKVQQGYLESSNVDPVKEITSLITAQRAF 240 Query: 221 NSITTLI---DENEKSMLEAIR 239 + +I DE ++ + IR Sbjct: 241 EMNSKVIQAADEMAGTVSKGIR 262 >gi|190574263|ref|YP_001972108.1| flagellar hook protein FlgE [Stenotrophomonas maltophilia K279a] gi|190012185|emb|CAQ45808.1| putative flagellar hook protein [Stenotrophomonas maltophilia K279a] Length = 407 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----KNDIDQKISFV 59 FN+ L+ A LS A+N++N +T GF+ + +F+++ A KN + + Sbjct: 3 FNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRVS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ + G TG LD A+ G+ +F + + +R G F+ G +V+ G Sbjct: 63 NVAQQF---KQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDASGYVVNPQG 119 >gi|42524754|ref|NP_970134.1| hypothetical protein Bd3395 [Bdellovibrio bacteriovorus HD100] gi|39576964|emb|CAE78193.1| flgE [Bdellovibrio bacteriovorus HD100] Length = 427 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAI-KNDIDQKI 56 +S G++ A + L + DN++N +T+GF+ + +F +++ G + N I + + Sbjct: 5 SSLYTGVSGMTAQGEALGVIGDNIANANTIGFKASRAEFQDIISKNLKGIVGGNQIGRGV 64 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + + LS+ G+ +T D A+ GD +F ++ G TRDG F +G LV+ Sbjct: 65 K-IGAVNPILSQ--GNIDATEKVTDLAISGDGYFKVKGSDGESYTRDGSFHFDREGYLVT 121 >gi|110632640|ref|YP_672848.1| flagellar hook protein FlgE [Mesorhizobium sp. BNC1] gi|110283624|gb|ABG61683.1| flagellar basal body FlaE [Chelativorans sp. BNC1] Length = 422 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A RLSTVADN++N+ T G++ +FS +V ++ + +S Sbjct: 10 GVSGMNAQANRLSTVADNIANSSTNGYKRATTEFSTLVVPGTQGSYNSGGVTSTVRNAVS 69 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T + D A+ G +F ++ G LTR G F + DG LV++SG Sbjct: 70 AQ-GVLQYTTSITDLAVNGSGFFIVQGSNGQPYLTRAGSFVLDGDGRLVNSSG 121 >gi|71906391|ref|YP_283978.1| flagellar hook protein FlgE [Dechloromonas aromatica RCB] gi|71846012|gb|AAZ45508.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Dechloromonas aromatica RCB] Length = 442 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 8/118 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +F GL+ + L ++N++N TVGF++ F++V G + + +S Sbjct: 2 AFQQGLSGLNTSSKALDVTSNNIANASTVGFKSASTHFADVYAASLAGGGASQVGIGVSA 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 A +++ G+ +T LD AL G+ +F + + TR+G+F + G +V+ Sbjct: 62 SAIAQQFTQ---GNITTTSNSLDIALNGNGFFRMTQDGAVRYTRNGQFHLDSTGYIVN 116 >gi|34498338|ref|NP_902553.1| flagellar basal-body rod protein FlgG [Chromobacterium violaceum ATCC 12472] gi|34104192|gb|AAQ60551.1| flagellar basal-body rod protein FlgG [Chromobacterium violaceum ATCC 12472] Length = 260 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 43/255 (16%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKN--------DIDQKISFVAS 61 +L V++N++N +TVGF+ + F ++ G + N + + VAS Sbjct: 18 QLDVVSNNLANVNTVGFKKSRGIFEDLYYQTLRQPGGQLANGNANPTGLQVGTGAAAVAS 77 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 + + G TG LD ++GD +F L P G +R+G+F+ +G++V+ G Sbjct: 78 SRIFTQ---GPPQQTGQPLDLQIQGDGFFRLLQPDGTTAYSRNGQFQRDANGNVVNPDG- 133 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQG------ 168 P+ + I IP + V G + S + T+ L + QG Sbjct: 134 LPL----NPNINIPATAQQITVSSAGVVQYTLAGSAAPQTAGTILLTTFINPQGLQSIGN 189 Query: 169 --FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +++ SG + P D G +K GFLE SN N E+ MI + F + Sbjct: 190 NLYLQTAASGDPQD--GNPQTDDRGA-IKSGFLESSNVNVTEELVNMITAQRSFEMNSRA 246 Query: 227 IDENEKSMLEAIRNI 241 + ++ ML+ + N+ Sbjct: 247 VTTADQ-MLQKLSNL 260 >gi|288554368|ref|YP_003426303.1| flagellar basal-body rod protein [Bacillus pseudofirmus OF4] gi|288545528|gb|ADC49411.1| flagellar basal-body rod protein [Bacillus pseudofirmus OF4] Length = 272 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/267 (22%), Positives = 116/267 (43%), Gaps = 41/267 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---------ISFVA 60 A +A +QR + +N++N +T G++ + + +D + I +A Sbjct: 10 AGMIAQQQRQEMLTNNLANANTPGYKADQASLRAFPNMLIKAMDTQGPKGASAPIIGELA 69 Query: 61 SGKEYLSKEVGSFIS-----TGTELDFAL------EGDA------WFALESPRGIILTRD 103 +G YL + + +F TG D AL EG++ ++ ++S I+ +R+ Sbjct: 70 TGV-YLQERMPNFRQGDINETGNSTDIALLQGVLPEGESGRPGALFYTIQSNDEILYSRN 128 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGL-Y 161 G F + G L + G+Y VL +Q+ DE F + G I S G VI + + Y Sbjct: 129 GNFTIDGAGFLTTTEGQY-VLGTNGESLQV--GDENFTLDPNGTITSSDGAVIGQINVAY 185 Query: 162 SVD------MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + D G +R G +P +++GF+E SN ++ M +M++ Sbjct: 186 AEDPMLLVKEGDGLLRYTEEG---ELPTAIGNAEINYQLQQGFIERSNVDASQTMTEMMN 242 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + F + ++ ++S+ +A+ + Sbjct: 243 AYRSFEANQRILQAYDQSLDKAVNEVG 269 >gi|269138583|ref|YP_003295283.1| flagellar basal-body rod protein [Edwardsiella tarda EIB202] gi|267984243|gb|ACY84072.1| flagellar basal-body rod protein [Edwardsiella tarda EIB202] gi|304558593|gb|ADM41257.1| Flagellar basal-body rod protein FlgF [Edwardsiella tarda FL6-60] Length = 251 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 28/244 (11%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G A+Q +Q ++ A+NM+N+ T GFR V + + + + V + Sbjct: 9 MGAASQTLNQQAIA--ANNMANSTTPGFRAQLAALRAV--PVDGESVETRTLVTASTPMH 64 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 +G T LD AL+ D W A++ P G TR+G ++ G L S G + D Sbjct: 65 DLSMGKLDYTERPLDVALQQDGWLAVQMPDGAEAYTRNGNLQINPQGMLTS-QGHLVMGD 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRENSGISP 179 + PI IP + ++ + G I+ G +G L V S V + G+ Sbjct: 124 --NGPIAIPDRAQL-TIAADGTITALGAGDQPNATTQIGRLKLVKASAQEVVHGDDGMFH 180 Query: 180 NIPPT--------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLID 228 P PL+ V V G LE SN + M MI ++F + +D Sbjct: 181 LTPEAEQKRGAQLPLD--PTVKVMPGVLEGSNVQPVEAMVNMITNARRFEMQMKVIRSVD 238 Query: 229 ENEK 232 +NE+ Sbjct: 239 DNEQ 242 >gi|300870390|ref|YP_003785261.1| flagellar hook protein FlgE [Brachyspira pilosicoli 95/1000] gi|300688089|gb|ADK30760.1| flagellar hook protein, FlgE [Brachyspira pilosicoli 95/1000] Length = 441 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 12/135 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQ- 54 M S G++ + R+ V +N+SN +T GF+ +V F +++ GA K D+ Sbjct: 1 MMRSLFAGVSGLQNHQTRMDVVGNNISNVNTYGFKKGRVTFKDMISQSLSGAAKPQEDRG 60 Query: 55 --KISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + + + G+ TG D A++G+ +F + TR+G F + Sbjct: 61 GINPQQVGLGMQVATIDTIHTQGALQVTGVNTDLAIQGEGFFIEKKGNSSYYTRNGAFSI 120 Query: 109 TDDGSLVSASGKYPV 123 +G LV+ S Y V Sbjct: 121 DKNGYLVNPSNGYKV 135 >gi|209963565|ref|YP_002296480.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] gi|209957031|gb|ACI97667.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] Length = 261 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 22/145 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 + NI +A + + +++N++N +TVGF+ + +F +++ G+ +D D Sbjct: 3 TLNIAATGMMAQQLNVEVISNNIANLNTVGFKRSRAEFQDLMYQAQVRPGSESSDQD--- 59 Query: 57 SFVASGKEY--------LSKEVGSFISTGTELDF--ALEGDAWFALESPRG-IILTRDGR 105 + V +G + +S+ G T TE D+ AL+G +F + P G TR G Sbjct: 60 TIVPAGIQLGLGVKPAAVSRMHGQGPLTPTENDYDVALDGRGYFVITLPNGDTAYTRAGN 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP 130 F+++ +G++V+ G Y V +VP Sbjct: 120 FQLSPEGTIVTVDG-YTVSPNITVP 143 >gi|319781681|ref|YP_004141157.1| flagellar basal-body rod protein FlgG [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167569|gb|ADV11107.1| flagellar basal-body rod protein FlgG [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 262 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 20/135 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI------SFVASG----- 62 A + L +A+N++N +T G++ + +FS+++ + D Q + S V G Sbjct: 13 AQQTNLEVIANNIANINTTGYKRARAEFSDLLYQV--DRTQGVPNRSNASLVPEGVSIGL 70 Query: 63 --KEYLSKEV---GSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS 116 K + V G STG D AL G WF +E + G + +R G G LV+ Sbjct: 71 GVKTTAVRNVHTQGELTSTGNSFDLALTGRGWFQIEGADGGTLYSRAGALNTNATGQLVT 130 Query: 117 ASGKYPVLDMASVPI 131 G V+ +VP+ Sbjct: 131 VDGA-AVIPAINVPV 144 >gi|289666047|ref|ZP_06487628.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 407 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 3 FNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRVS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 63 NVAQQF---SQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 >gi|167628969|ref|YP_001679468.1| flagellar basal-body rod protein flgg, putative [Heliobacterium modesticaldum Ice1] gi|167591709|gb|ABZ83457.1| flagellar basal-body rod protein flgg, putative [Heliobacterium modesticaldum Ice1] Length = 258 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 10/117 (8%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVASGKEYLSKEVG 71 +A + + T+++N++N +T G++ + +F +++ I+ Q + + G + Sbjct: 13 IAQQLNMDTISNNLANVNTNGYKKSRAEFQDLLYSTIRTATAQVPTGMQVGAGVRPSSIT 72 Query: 72 SFISTGTEL------DFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASG 119 + IS+G + D A+ G+ +F L +P TRDG FK+ +G LV+A G Sbjct: 73 TIISSGNMVQTDNPYDLAITGEGYFRLINPNNDAVPFYTRDGSFKLDKEGYLVNADG 129 >gi|332162899|ref|YP_004299476.1| Lateral flagellar rod protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604254|emb|CBY25752.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica Y11] gi|325667129|gb|ADZ43773.1| Lateral flagellar rod protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863349|emb|CBX73472.1| flagellar basal-body rod protein flgG [Yersinia enterocolitica W22703] Length = 261 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 28/161 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 GLAAQ + +++ +++N++N +T GF+ +V F ++ A N I Sbjct: 11 GLAAQ---DAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRTPGAPLDQNNATPNGIQ 67 Query: 54 --QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTD 110 + V + K++ VG+ T +LD A+ G +F +E S G+ TR G + Sbjct: 68 FGSGVKVVGTQKQF---TVGNIKVTKGDLDVAIAGQGFFQVETSDGGLAYTRAGNLSINA 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 DG L +A G P++ I++P + +G+ G ++ + Sbjct: 125 DGVLTNAQG-LPLIPQ----IELPAGAKDLAIGKDGTVTAR 160 >gi|307546968|ref|YP_003899447.1| flagellar hook protein FlgE [Halomonas elongata DSM 2581] gi|307218992|emb|CBV44262.1| flagellar hook protein FlgE [Halomonas elongata DSM 2581] Length = 422 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F+ L+ A L + +N++N+ TVGF+ F++V K + K+S V ++ Sbjct: 3 FSQALSGLNAASSSLDVLGNNIANSQTVGFKGSDTLFADVYANSKVGLGTKVSRVL--QD 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ STG LD + G+ + + ++ +R+G+ +T DG L +A G Sbjct: 61 FGE---GNLESTGRNLDLGISGEGFLRFQQNGEVVYSRNGQLSMTADGYLENAQG 112 >gi|212634349|ref|YP_002310874.1| flagellar basal body rod protein FlgF [Shewanella piezotolerans WP3] gi|212555833|gb|ACJ28287.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 247 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 41/224 (18%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-------- 70 L+ A+N++N +T GF K D+ Q S A G E L V Sbjct: 19 LAISANNLANANTDGF--------------KADLAQARSMQAFG-EGLPTRVFAMTESPS 63 Query: 71 -----GSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVL 124 G +TG +LD A++GD W A+++ G TR G G L + G + Sbjct: 64 ADFTNGPIKTTGRDLDIAVKGDGWIAVQADDGGEAYTRSGSLSFDTTGVLRNDKGTPLMG 123 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMG-LYSVDMSQGFVRRENSGIS 178 D PI +P E + + G IS + +VI +G + V+ + R G+ Sbjct: 124 DNG--PIVLPLPIEKIEISQDGIISVRPTGATAEVIEEVGRIKLVNPGNENLMRGKDGLF 181 Query: 179 PNIP--PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P P DLS V + G +E SN N+++EM MI + ++F Sbjct: 182 RQMSGEPAP-ADLS-VGLLSGAVEGSNVNAVHEMVSMIDIQRQF 223 >gi|323495377|ref|ZP_08100454.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] gi|323310300|gb|EGA63487.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] Length = 434 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 23/150 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQKISFVAS 61 + L+ A + L+T ++N++N +T GF+ + +F +V K Q + Sbjct: 4 VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAKV 63 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSA 117 +++ GS I T +D + G +FA+ SP LTR+G F + D +V+A Sbjct: 64 AQQF---HEGSSIYTNNPMDLRISGTGFFAVAKDRLSPTTNELTRNGAFHLNKDNYMVTA 120 Query: 118 SGKY-----------PVLDMASVPIQIPQK 136 + ++ VL PI IP++ Sbjct: 121 NDEFLLGYQVNKDTGDVLSYEPSPINIPKE 150 >gi|206558968|ref|YP_002229728.1| flagellar hook protein FlgE [Burkholderia cenocepacia J2315] gi|198035005|emb|CAR50877.1| flagellar hook protein 1 FlgE1 [Burkholderia cenocepacia J2315] Length = 413 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 72/140 (51%), Gaps = 14/140 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYL 66 GL+ L + +N++N +TVGF++ +F+++ ++ ++ +I + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIG-IGTSLNSV 64 Query: 67 SKEVG--SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK---- 120 ++ G + +T + LD A+ G+ +F + + +RDG F+ +G +V + G+ Sbjct: 65 QQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMG 124 Query: 121 YP-----VLDMA-SVPIQIP 134 Y V++ A +VP+Q P Sbjct: 125 YAANAGGVINTAQTVPLQAP 144 >gi|157364671|ref|YP_001471438.1| hypothetical protein Tlet_1820 [Thermotoga lettingae TMO] gi|157315275|gb|ABV34374.1| protein of unknown function DUF1078 domain protein [Thermotoga lettingae TMO] Length = 631 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 12/128 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDIDQKISF-V 59 G+A + + V +N++N +TVGF+ +V F + + +N+I + Sbjct: 8 GVAGMRNFQYAIDVVGNNIANVNTVGFKGSRVTFQTALLQTMKAARSPQNNIGGTNPIQI 67 Query: 60 ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 G + + + GSF +TG + D A++GD +F L TR G V +G+L+ Sbjct: 68 GLGSQLATIDKIMTQGSFENTGNKTDLAIQGDGFFVLSDGSQYYYTRAGALSVDTNGTLI 127 Query: 116 SASGKYPV 123 +S Y V Sbjct: 128 QSSTGYKV 135 >gi|325291962|ref|YP_004277826.1| Flagellar hook protein FlgE [Agrobacterium sp. H13-3] gi|325059815|gb|ADY63506.1| Flagellar hook protein FlgE [Agrobacterium sp. H13-3] Length = 426 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A +L TV DN++N T G++ FS +V + V S Y Sbjct: 10 GVSGMNAQANKLGTVGDNIANASTTGYKRASTSFSSLV-LPSSSGSYASGGVQSNVRYSI 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 E G+ T + D A++G+ +F ++ G LTR G F +G L +A+G Sbjct: 69 SEQGNLSYTTSSTDLAIQGNGFFVVQDGGGTPYLTRAGSFVKNAEGYLENAAG 121 >gi|288958675|ref|YP_003449016.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288910983|dbj|BAI72472.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 261 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 16/142 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI 56 S IG +A + + T+++N++N+ T G++ + +F ++ +G+ +D + Sbjct: 3 SLAIGATGMIAQQLNVETISNNIANSTTTGYKKQRAEFQDLLYQNFRRIGSTSSDAGTVV 62 Query: 57 SF---VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 V +G + E G+ T +LD A+ G +F + P G TR G FK+ Sbjct: 63 PTGVQVGAGVRVAAVARVLEQGNLNITDNKLDVAINGSGYFQITLPSGDTSYTRAGNFKL 122 Query: 109 TDDGSLVSASGKYPVLDMASVP 130 + G +V+A G Y V ++P Sbjct: 123 SPQGVIVTADG-YTVQPNITIP 143 >gi|291334315|gb|ADD93976.1| hypothetical protein Rsph17025_1668 [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 251 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 32/225 (14%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIK--NDIDQKISFVASGKEYLSKEVGSFISTGTE 79 +A+N++N + GFR + G +K + + K+ + S + S E GS +TG E Sbjct: 22 LANNLANVNVPGFRK-DLPNEGNAGFLKELDKVSAKVLPLESDRRLFSNESGSLQNTGLE 80 Query: 80 LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ--K 136 D A+ + +F ++ G + L+R G V LV+ G VL PI +P Sbjct: 81 TDVAVLNEGFFYIQPENGQVALSRRGDLGVNAQNQLVNGVGDL-VLSDGLEPILLPNFTA 139 Query: 137 DEIFNVGE---------KGEISQKGKVIATMG-----LYSVDMSQGFVRRENSGISPNIP 182 I ++GE GE++ G + +T + S+D G +R+ + + Sbjct: 140 MSITDIGEVLVQQPGLPDGELTSVGFIGSTTSQLEQLIKSLD---GNIRKIDGTV----- 191 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 P P D +G +G+LE SN N++ E+ + I + ++F LI Sbjct: 192 PDP--DQTG-KFGQGYLESSNVNAIEELIRNIDMQRQFEINVKLI 233 >gi|225569956|ref|ZP_03778981.1| hypothetical protein CLOHYLEM_06051 [Clostridium hylemonae DSM 15053] gi|225161426|gb|EEG74045.1| hypothetical protein CLOHYLEM_06051 [Clostridium hylemonae DSM 15053] Length = 250 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%) Query: 13 LALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVVGAIKNDIDQKI--------SFVAS 61 L +R++ +++NMSN T G++ + F E + + D+ VA+ Sbjct: 13 LTQTRRMNVISNNMSNVSTPGYKRDQFVCKTFKEEMIYRSGNKDKSSPAQLGTMNRIVAA 72 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + Y G + ST + LDFA+ +F ++S G + TR+G F + ++G L Sbjct: 73 DRNYTDFAAGGYESTESPLDFAIGTSGFFRIQSGNGTVYTRNGSFSLDNNGYLA 126 >gi|325918877|ref|ZP_08180954.1| flagellar hook protein FlgE [Xanthomonas vesicatoria ATCC 35937] gi|325534914|gb|EGD06833.1| flagellar hook protein FlgE [Xanthomonas vesicatoria ATCC 35937] Length = 407 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G+ TG LD A+ G+ +F + S + TR G F+ +G +++ Sbjct: 62 SNVAQQF---SQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDSNGYVINPQ 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|296274029|ref|YP_003656660.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] gi|296098203|gb|ADG94153.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] Length = 241 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 32/145 (22%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR----------------TIKVKFSEVVGAIKND-- 51 AA + R+ TV++N++N+ T+GF+ ++ K E + + N Sbjct: 10 AAMVNQINRVDTVSNNLANSRTIGFKQENLAEGTFNNYLLKANLEGKKPEYINELTNKVP 69 Query: 52 -IDQKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILTRDGRFKV 108 IDQK F+ S + G + TG LDFAL E +FA+ G + T+DG FK Sbjct: 70 KIDQK--FIDSSQ-------GPIVQTGNNLDFALKEPQTFFAVLDQNGNVQYTKDGSFK- 119 Query: 109 TDDGSLVSASGKYPVLDMASVPIQI 133 DG LV ++G VL PI I Sbjct: 120 NSDGFLVDSNGN-NVLSGDGEPIAI 143 >gi|297584044|ref|YP_003699824.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297142501|gb|ADH99258.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 424 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 27/139 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ + +L + +N+SN +T GF+ +V F+++V Q+++ + Sbjct: 1 MIRSLYSGIGGMNNFQTKLDVIGNNISNVNTFGFKKGRVTFNDLV-------SQQLAGAS 53 Query: 61 SGKE-----YLSKEVG---------------SFISTGTELDFALEGDAWFALESPRGIIL 100 S +E ++VG S STG +LD A+ GD +F + Sbjct: 54 SPQEGERGGTNPRQVGLGGSTASIDTINTQGSLQSTGRDLDMAISGDGFFQVADGGQNFY 113 Query: 101 TRDGRFKVTDDGSLVSASG 119 TR G F + ++G LV+A G Sbjct: 114 TRAGNFYLDENGMLVNADG 132 >gi|103488387|ref|YP_617948.1| protein of unknown function DUF1078-like protein [Sphingopyxis alaskensis RB2256] gi|98978464|gb|ABF54615.1| protein of unknown function DUF1078-like protein [Sphingopyxis alaskensis RB2256] Length = 275 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 5/121 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L+ A + +S +++N++N VGF+ K +F ++ + + I+ + Sbjct: 2 SFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTRL 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFAL--ESPR-GIILTRDGRFKVTDDGSLVSAS 118 ++++ GS+ S+ LD A+ G+ F + E PR + TR+G F+ T DG ++ + Sbjct: 62 NGITQQFTQGSYESSEKTLDLAIVGEGLFIVKGEPPREQVSYTRNGSFEPTPDGYVIDTT 121 Query: 119 G 119 G Sbjct: 122 G 122 >gi|325982369|ref|YP_004294771.1| flagellar basal-body rod protein FlgG [Nitrosomonas sp. AL212] gi|325531888|gb|ADZ26609.1| flagellar basal-body rod protein FlgG [Nitrosomonas sp. AL212] Length = 260 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + +L +A+N++N +T GF+ + F +++ GA + Q S + Sbjct: 11 GLEAQ---QTKLDVIANNLANVNTNGFKRSRAVFEDLMYQTLRQPGAQSSQQTQLPSGLQ 67 Query: 61 SG---KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 G K ++ + G T D A+ G +F + P G TRDG F++ +G Sbjct: 68 LGTGVKPVATESIFTQGIIQPTDNPRDVAIRGLGFFQVLMPDGTTAYTRDGAFQLDLNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATM 158 LV++SG M I +P + VG G +S Q I Sbjct: 128 LVTSSGY-----MVQPAIVVPPNTQTVTVGRDGTVSATVPGSNVPIQLGNIQLASFINPS 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL M + S +PN P + G+ + +GF+E SN + + E+ MI TQ Sbjct: 183 GLQ--KMGENLYMETASSGTPN-QNAPGTNGLGI-LDQGFVETSNVSVVEELVNMIQ-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + + E ML+ + + Sbjct: 238 RAYEMNSKSIETSDQMLQKLAQL 260 >gi|300716220|ref|YP_003741023.1| flagellar basal-body rod protein [Erwinia billingiae Eb661] gi|299062056|emb|CAX59172.1| Flagellar basal-body rod protein [Erwinia billingiae Eb661] Length = 260 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 109/236 (46%), Gaps = 29/236 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +++N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLDAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTIRQPGAQSSEQTTLPSGMQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 G E L + G+ T + D A+ G +F ++ P G + TRDG F+ +G Sbjct: 68 LGTGVRPVATERLHTQ-GNLNKTDSSKDVAISGQGYFQVQMPDGTLAYTRDGSFQTDQNG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATMGLYSVDM- 165 LV+ +G +PV +VP +D + +V ++G+ Q G++ + + + Sbjct: 127 QLVT-NGGFPVQPAITVPANALSMTIGRDGVVSVTQQGQTQPVQVGQLTLSTFINDAGLE 185 Query: 166 SQG-FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S+G + +E TP + +G+ + +G++E SN N E+ MI + + Sbjct: 186 SKGENLYQETQASGAPTDSTPGNNGAGL-LYQGYVETSNVNVAEELVSMIQTQRAY 240 >gi|320354342|ref|YP_004195681.1| flagellar basal-body rod protein FlgG [Desulfobulbus propionicus DSM 2032] gi|320122844|gb|ADW18390.1| flagellar basal-body rod protein FlgG [Desulfobulbus propionicus DSM 2032] Length = 260 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 56/270 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 G++AQ + +A+N++N T GF+ + F +++ G+ + + + + Sbjct: 10 GMSAQ---NLNMDVIANNLANVSTTGFKKSRADFQDLLYQIMKVPGSPTSADTRSPTGIQ 66 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G V G + T LD A+EG +F + P G I TR G K+ +G Sbjct: 67 VGLGVKPAAVTKVFTEGDIVQTENTLDVAIEGPGFFQVTLPDGNIAYTRAGNLKLDGEGR 126 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-------LYSVDM- 165 L ++ G +P+ I IP+ + ISQ G V A +G L +VD+ Sbjct: 127 LTTSDG-FPI----EPEIVIPED------AREVTISQTGVVSAIVGDDTTSTELGNVDLV 175 Query: 166 -----------SQGFVRRENSGISPNI--PPTPLEDLSGV-TVKRGFLEDSNANSMYEMG 211 + R + +P I P T +G+ T+ +G++E+SN N + EM Sbjct: 176 DFVNDAGLIAIGRNLFRETEASGAPLIGAPGT-----NGIGTLLQGYVENSNVNLVEEMT 230 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI TQ+ I + + M++ + N+ Sbjct: 231 HMIT-TQRAFEINSNVITTSDEMMQTVTNM 259 >gi|152980126|ref|YP_001353113.1| FlgG flagellar basal body rod protein [Janthinobacterium sp. Marseille] gi|151280203|gb|ABR88613.1| FlgG flagellar basal body rod protein [Janthinobacterium sp. Marseille] Length = 260 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 42/263 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + ++ +++N++N T GF+ + F +++ GA + Q S Sbjct: 11 GLDAQ---QTQMDVISNNLANVSTSGFKRSRAVFEDLLYQNIRQPGAASSQQTQLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + +G ++ E G+ T D A+ GD +F + P G TRDG F+ + G Sbjct: 68 IGTGVRPVATERIHTQGNLQLTSNSKDMAILGDGFFQVLMPDGTTAYTRDGSFQTDNQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIP----QKDEIFNVGEKGEISQK-------GKVIATMGLYS 162 +V++SG +P+ +P +D I +V G +Q I GL S Sbjct: 128 MVTSSG-FPIQPAIVIPANATAISISRDGIVSVTVPGTTAQTEVGALQVATFINPAGLES 186 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQ 218 + EN + P + G V++ ++E SN N + EM MI TQ Sbjct: 187 --------KGENLYVETTASGNPTTNNPGTNGAGYVQQNYVETSNVNVVEEMVNMIQ-TQ 237 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + I + ML+ + + Sbjct: 238 RAYEINSKAISTSDQMLQRLTQL 260 >gi|194365680|ref|YP_002028290.1| flagellar hook protein FlgE [Stenotrophomonas maltophilia R551-3] gi|194348484|gb|ACF51607.1| flagellar basal body FlaE domain protein [Stenotrophomonas maltophilia R551-3] Length = 407 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----KNDIDQKISFV 59 FN+ L+ A LS A+N++N +T GF+ + +F+++ A KN + + Sbjct: 3 FNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRVS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ + G TG LD A+ G+ +F + + +R G F+ G +++ G Sbjct: 63 NVAQQF---KQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDPSGYVINPQG 119 >gi|238755322|ref|ZP_04616665.1| Flagellar basal-body rod protein flgG [Yersinia ruckeri ATCC 29473] gi|238706458|gb|EEP98832.1| Flagellar basal-body rod protein flgG [Yersinia ruckeri ATCC 29473] Length = 260 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 48/266 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F ++ P G TRDG F++ Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSKTDNSKDIAIKGQGFFQVQLPDGTNAYTRDGSFQMDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIATM-- 158 +G LV+ASG I IP VG G +S Q G++ T Sbjct: 125 NGQLVTASGF-----QVQPAITIPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFI 179 Query: 159 ---GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL SV + + S +PN TP + +G+ + +G++E SN N E+ MI Sbjct: 180 NDSGLESV--GENLYQETASSGAPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 TQ+ I + ML+ + + Sbjct: 236 -TQRAYEINSKAVTTSDQMLQKLTQL 260 >gi|163784308|ref|ZP_02179218.1| hypothetical protein HG1285_04693 [Hydrogenivirga sp. 128-5-R1-1] gi|159880426|gb|EDP74020.1| hypothetical protein HG1285_04693 [Hydrogenivirga sp. 128-5-R1-1] Length = 200 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 30/165 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-----SFVASG 62 G+ AQ + L +++N++N +TVGF+ + F +++ +N D + + V +G Sbjct: 11 GMEAQ---QTNLDVISNNIANVNTVGFKKSRANFEDLI--YQNLRDPGVMSSTETRVPTG 65 Query: 63 KEY--------LSKEV--GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + +SK GS + T LD A++G +F +E P G TR G F++ D Sbjct: 66 MQVGLGVKLSDISKTFSQGSLMKTDRPLDIAIQGKGFFKVELPGGGEAYTRAGNFQIDDQ 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G +V+ G S IQI + + ++ IS+ G V A Sbjct: 126 GYIVTPEGY-----RLSPNIQITAPETLISI----NISENGNVYA 161 >gi|149908759|ref|ZP_01897420.1| flagellar hook protein [Moritella sp. PE36] gi|149808301|gb|EDM68240.1| flagellar hook protein [Moritella sp. PE36] Length = 437 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 29/134 (21%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------VGAIKNDID 53 S++IGL+ + ++L+ ++ N++N +T GF++ + +FS V V AI ++ D Sbjct: 2 SYSIGLSGLRSTNEQLNVISQNIANVNTSGFKSGRAEFSSVYSGGSAGGVEVAAISSNFD 61 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + G ++TG +D A+ G +F L + TR G F Sbjct: 62 RD---------------GDVVNTGRSMDLAISGRGFFVLNNGGETSYTRAGSFVRNASNY 106 Query: 114 LVSASGK----YPV 123 + ++SG YPV Sbjct: 107 IETSSGARLQGYPV 120 >gi|90418365|ref|ZP_01226277.1| putative flagellar hook protein FlgE [Aurantimonas manganoxydans SI85-9A1] gi|90338037|gb|EAS51688.1| putative flagellar hook protein FlgE [Aurantimonas manganoxydans SI85-9A1] Length = 388 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 33/152 (21%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQ 54 F ++ A RLSTV++N++N+ T G++ +F+ +V G++K + Q Sbjct: 7 FRTSVSGMNAQANRLSTVSENIANSSTNGYKRNSTEFASLVLAQGGGEYNPGSVKTQVRQ 66 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF--KVTDD 111 IS + GS +T + D A++GD +F ++ G TR G F + Sbjct: 67 SIS-----------QQGSIAATSSGSDLAIQGDGFFVVQDTAGREFYTRAGSFVQRTETI 115 Query: 112 GS-----LVSASG----KYPVLDMASVPIQIP 134 G LV+ +G PV A+ PI++P Sbjct: 116 GGKETTFLVNTAGYRLTGSPVGGGAAAPIELP 147 >gi|255262922|ref|ZP_05342264.1| flagellar hook protein FlgE [Thalassiobium sp. R2A62] gi|255105257|gb|EET47931.1| flagellar hook protein FlgE [Thalassiobium sp. R2A62] Length = 422 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 16/130 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A +L+T++DN++N+ T G++ F +V N ++ A Sbjct: 3 ISSSLNAGIAGLAANASKLATISDNIANSSTFGYKRAGADFHSLVTGSGNG-----TYSA 57 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI-------ILTRDGRFKVT 109 G ++ + GS +ST D ++ G + + G+ +LT G F+ Sbjct: 58 GGVSVTTQRMVDARGSLVSTSNATDLSISGRGMLPVTNRSGVESGDSAMMLTSTGSFRTD 117 Query: 110 DDGSLVSASG 119 +G L ++ G Sbjct: 118 SNGYLTTSGG 127 >gi|254292905|ref|YP_003058928.1| flagellar basal body rod protein FlgG [Hirschia baltica ATCC 49814] gi|254041436|gb|ACT58231.1| flagellar basal-body rod protein FlgG [Hirschia baltica ATCC 49814] Length = 261 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 20/136 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI------ 56 A QL +E +++N++N +T G++ + +F +++ G +D + + Sbjct: 13 AQQLNVE----VISNNIANMNTTGYKRQRAEFQDLLYTNMEKMGVSSSDANTIVPTGVQI 68 Query: 57 -SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 + V +G Y E G T D A++GD +F ++ P G TR G F V DG + Sbjct: 69 GTGVKAGSVYRITEQGPVQQTSNSYDVAMQGDGYFIVQLPDGRDAYTRAGNFSVNGDGQI 128 Query: 115 VSASGKYPVLDMASVP 130 V+ G Y V +VP Sbjct: 129 VTEDG-YTVSPGINVP 143 >gi|118474276|ref|YP_891712.1| flagellar basal-body rod protein [Campylobacter fetus subsp. fetus 82-40] gi|118413502|gb|ABK81922.1| flagellar basal-body rod protein [Campylobacter fetus subsp. fetus 82-40] Length = 270 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 121/278 (43%), Gaps = 46/278 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 MQ + A + RL + +N++N +T+G++ V ++ K Sbjct: 1 MQNGYYQATGAMVTQFNRLDVITNNLANVNTIGYKRDDVVIADFERIFKETRDILPLENH 60 Query: 52 -------IDQKISFVASGKE-YLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTR 102 +++ I V E Y VG T LD A+ + D + +++P G+ LT+ Sbjct: 61 TRDAAKFLNRTIDRVPQINEIYTDFNVGGLKMTNNPLDVAIGKSDLFLLVDTPNGVRLTK 120 Query: 103 DGRFKVTDDGSLVSASGKYPVL--DMASVP-----IQIPQKDEIFNVGEKGEISQKGKVI 155 +G + ++G +V+ G Y VL + + P IQIPQ D + + G I + Sbjct: 121 NGALNLDNEGYIVTKEG-YRVLPNNYENQPEEVRGIQIPQ-DAPVTIDKDGNIYSNNE-- 176 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEM- 210 +G + + + + G + + P L +L+ V +V +G+ + SN N + EM Sbjct: 177 -NVGRFFIAQPREIRNLQKEGDNLFVLPN-LNELNDVENSGSVAQGYSQISNVNPVIEMV 234 Query: 211 -----GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +++ + Q+ S T + D N+ EAI +AS Sbjct: 235 NLVETNRLVDMYQRVMS-THMNDINQ----EAITKLAS 267 >gi|21242727|ref|NP_642309.1| flagellar hook protein FlgE [Xanthomonas axonopodis pv. citri str. 306] gi|294625274|ref|ZP_06703913.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664591|ref|ZP_06729932.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325927875|ref|ZP_08189099.1| flagellar hook protein FlgE [Xanthomonas perforans 91-118] gi|21108203|gb|AAM36845.1| flagellar biosynthesis hook protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600448|gb|EFF44546.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605648|gb|EFF48958.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541715|gb|EGD13233.1| flagellar hook protein FlgE [Xanthomonas perforans 91-118] Length = 407 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 3 FNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRVS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 63 NVAQQF---SQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 >gi|292489133|ref|YP_003532020.1| flagellar hook protein FlgE [Erwinia amylovora CFBP1430] gi|292900252|ref|YP_003539621.1| flagellar hook protein [Erwinia amylovora ATCC 49946] gi|291200100|emb|CBJ47226.1| flagellar hook protein [Erwinia amylovora ATCC 49946] gi|291554567|emb|CBA22181.1| Flagellar hook protein flgE [Erwinia amylovora CFBP1430] gi|312173291|emb|CBX81546.1| Flagellar hook protein flgE [Erwinia amylovora ATCC BAA-2158] Length = 410 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 20/144 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ GL+ A L V +N++N+ T GF++ + F+++ + + SG+ Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKSGSIGFADIFAGAQG---MGVQVAGSGQ 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 + + G TG LD + G+ +F L G +R+G+F +G + + Sbjct: 59 NF---KDGGLTGTGRNLDMGINGNGFFRLMDEAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 117 -----ASGKYPVLD--MASVPIQI 133 A+G P + A PIQI Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQI 139 >gi|28211310|ref|NP_782254.1| flagellar basal body rod protein FlgG [Clostridium tetani E88] gi|28203750|gb|AAO36191.1| flagellar hook-basal body complex protein [Clostridium tetani E88] Length = 260 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/257 (22%), Positives = 113/257 (43%), Gaps = 29/257 (11%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-----FVASGK 63 ++ + E + + V +N++N T GF++ + + + + D+K+ G Sbjct: 9 VSGMITEEAKQNVVTNNLANVTTPGFKSDNLSVKQFDDVLLYNYDKKVGNKNVRHDLGGL 68 Query: 64 EYLSK--EVGSFISTG------TELDFALEGDAWFALESP----RGIILTRDGRFKVTDD 111 SK EV ++ G DFA++G +F +E + TR+G F V + Sbjct: 69 SMGSKIDEVNTYFQQGMLEKTDRATDFAIQGKGFFVVEREGQGGNERLYTRNGHFYVNNR 128 Query: 112 GSLVSASGKYPVL----DMASV-PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G LV+ SG Y V+ D +V PI++ E F + ++G I G T+ + Sbjct: 129 GFLVNDSG-YNVIGRNNDTGAVEPIRLNT--ENFTLTKEGNILVDGNTTYTLQVADFQNY 185 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + + + N + + VK+ LE SN N++ EM +M+ + + F + + Sbjct: 186 NDLRKVGHDAYTGNNAVNSTDYI----VKQNTLEKSNVNTIREMIEMMTVMRTFETNQKI 241 Query: 227 IDENEKSMLEAIRNIAS 243 I + ++ +A+ I + Sbjct: 242 IQSIDDTLGKAVNEIGN 258 >gi|23008562|ref|ZP_00049955.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 126 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 20/120 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQK------ 55 G++AQ + L +A+N++N +T GF+ + +F++++ + N Q+ Sbjct: 10 GMSAQ---QLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGVPNQAGQEAVPEGA 66 Query: 56 ---ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + A+ L ++ GS +TG +LD A+ G +F + SP G + TR G F ++ Sbjct: 67 MLGLGVRAAAIRNLHRQ-GSLANTGNQLDLAVNGRGYFQITSPAGEVNYTRAGSFNKNNN 125 >gi|126738557|ref|ZP_01754262.1| flagellar hook protein FlgE, putative [Roseobacter sp. SK209-2-6] gi|126720356|gb|EBA17062.1| flagellar hook protein FlgE, putative [Roseobacter sp. SK209-2-6] Length = 446 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 18/132 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ N G++ A L+ ++DN++N+ T G++ I+ F +V K S+ A Sbjct: 16 ISSALNAGVSGLSANASSLAAISDNIANSSTRGYKRIQTDFQSMVVGSKGG-----SYTA 70 Query: 61 SG----KEYLSKEVGSFISTGTELDFALEG------DAWFALESPRG---IILTRDGRFK 107 G K L E G + T D A+ G A +ES G ++LT G F+ Sbjct: 71 GGVGFDKLRLVDERGPLVGTNNATDLAVSGRGMLPVAALSEVESGNGNPTMMLTTTGSFR 130 Query: 108 VTDDGSLVSASG 119 DG L +ASG Sbjct: 131 TNADGYLTTASG 142 >gi|332161324|ref|YP_004297901.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605244|emb|CBY26742.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica Y11] gi|325665554|gb|ADZ42198.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860604|emb|CBX70901.1| flagellar basal-body rod protein flgG [Yersinia enterocolitica W22703] Length = 260 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 40/262 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G+ +F ++ P G TRDG F+ Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQTDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKV-----IATMG 159 +G LV+ SG + + ++P +D I +V G+ + Q G++ I G Sbjct: 125 NGQLVT-SGGFQIQPAITIPANAMSMTVGRDGIVSVTLPGQTATQQVGQLTLATFINNSG 183 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 L SV + + S +PN TP + G+ + +G++E SN N E+ MI TQ+ Sbjct: 184 LESV--GENLYQETASSGAPN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQR 238 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 I + ML+ + + Sbjct: 239 AYEINSKAVSTSDQMLQKLTQL 260 >gi|291287005|ref|YP_003503821.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290884165|gb|ADD67865.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 209 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 14/161 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G A + L A+N++N +T F++ ++ N+++Q ++ Sbjct: 1 MMQGLYTGANAISVYKNSLINTANNVANINTPYFKSNTLQL--------NEMEQGGVSIS 52 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S ++ ++++ IS+G LDF ++G F LE G TR+G F + +G +V + G+ Sbjct: 53 SIRQ--NQDLSYTISSGRTLDFVIDGSGQFRLEDNNGTSYTRNGVFYLDAEGDVVDSGGR 110 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLY 161 + D+ ++ + E +VGE G + G+ + +Y Sbjct: 111 KLLEDV----VKPGESAESLSVGEDGSFTVDGEFRGKIDVY 147 >gi|77359724|ref|YP_339299.1| flagellar basal body rod protein FlgG [Pseudoalteromonas haloplanktis TAC125] gi|76874635|emb|CAI85856.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] Length = 262 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + +S +++N++N TVG++ + F +++ G D + Sbjct: 11 GLDAQ---QTDISVISNNLANASTVGYKKSRAVFEDLLYQNINQPGGRSSQDTEMPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ ++T LD+ + G +F + P G I +R+G+F DG Sbjct: 68 LGAGAKVVANQKNFSQGNMLTTENSLDWMISGSGFFEVLQPDGNIAYSRNGQFTTDGDGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V++ Y V + +P + V + GE+S Sbjct: 128 VVTSGAGYVV----QPEMNVPDDAQSITVSQDGEVS 159 >gi|254524254|ref|ZP_05136309.1| flagellar biosynthesis hook protein [Stenotrophomonas sp. SKA14] gi|219721845|gb|EED40370.1| flagellar biosynthesis hook protein [Stenotrophomonas sp. SKA14] Length = 407 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----KNDIDQKISFV 59 FN+ L+ A LS A+N++N +T GF+ + +F+++ A KN + + Sbjct: 3 FNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRVS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ + G TG LD A+ G+ +F + + +R G F+ G +V+ G Sbjct: 63 NVAQQF---KQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDASGFVVNPQG 119 >gi|242280467|ref|YP_002992596.1| hypothetical protein Desal_3005 [Desulfovibrio salexigens DSM 2638] gi|242123361|gb|ACS81057.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 549 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVASGKE 64 G+ A ++S + +N++N +TVGF++ K+ F + + + + Q V G Sbjct: 10 GITGLQAHGDKMSVLGNNIANVNTVGFKSAKMHFEDAISQDMSTATGVAQVGRGVQVGAI 69 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASG 119 Y GSF +T D A+ GD +F + SP+ TR G F+ DG L G Sbjct: 70 YADFAQGSFETTSESTDLAIGGDGFF-IVSPKDEETSYYTRAGNFRFDKDGYLTDPHG 126 >gi|271500068|ref|YP_003333093.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech586] gi|270343623|gb|ACZ76388.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech586] Length = 260 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 30/257 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + + +++N++N T GF+ + F +++ GA ++ S + Sbjct: 11 GLNAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQTTLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G +S E G TG D A+ G +F + P G TRDG F++ +G Sbjct: 68 LGTGVRPVSTERIHTQGGLTETGNAKDLAINGAGFFQVLMPDGTTQYTRDGSFQLDSNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS--QKGKVIATMGLYSV---D 164 LV++SG + V ++P +D + V ++G+ + Q G++ M + + Sbjct: 128 LVTSSG-FQVQPAITIPANATNITVGRDGVVTVTQQGQTAPVQVGQLNLAMFINEAGLQN 186 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 M + S +P TP + +G+ +++ ++E SN N E+ MI TQ+ I Sbjct: 187 MGENLYAETASSGAP-TQSTPGLNGAGLIMQK-YVETSNVNVAEELVSMIQ-TQRAYEIN 243 Query: 225 TLIDENEKSMLEAIRNI 241 + + ML+ + + Sbjct: 244 SKAISSTDQMLQKLTQL 260 >gi|261856360|ref|YP_003263643.1| flagellar hook-basal body protein [Halothiobacillus neapolitanus c2] gi|261836829|gb|ACX96596.1| flagellar hook-basal body protein [Halothiobacillus neapolitanus c2] Length = 418 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 32/156 (20%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVAS 61 SFN + A ++ L ++N++N ++ GF++ + +F ++ V A N S A+ Sbjct: 2 SFNTSITGLNAAQKDLDVTSNNIANANSTGFKSSRAQFGDIYAVSAYGN------SKTAT 55 Query: 62 GKEYLSKEV------GSFISTGTELDFALEGDAWF----ALESPRGIILTRDGRFKVTDD 111 G+ L++ V GS T LD A+ G +F L+S + + +R G D Sbjct: 56 GQGVLTEAVQQQFTQGSLQFTNNSLDLAISGQGFFTFQPTLDSLQS-VYSRAGALGANKD 114 Query: 112 GSLVSASGKY----PV--------LDMASV-PIQIP 134 G +V+ +G+Y PV +AS PIQ+P Sbjct: 115 GFIVNTNGQYLKALPVSANGTLQSTSLASAKPIQLP 150 >gi|300854231|ref|YP_003779215.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] gi|300434346|gb|ADK14113.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] Length = 262 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 11/122 (9%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN------DIDQKISFVASG 62 ++A A + +L+++++N++N+DTVG++ V+F+++V N + + + +G Sbjct: 9 VSAMNAQQDKLNSISNNLANSDTVGYKKENVEFNDLVYETLNRKGYPTNSNGTNTINGTG 68 Query: 63 ---KEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 E++ G TG + D A++GD +F + G R G F V +G+LV + Sbjct: 69 VKATEWIRDNAQGPIQQTGLKTDMAIDGDGYFKVTLGNGTAAYERAGNFTVDRNGNLVDS 128 Query: 118 SG 119 +G Sbjct: 129 NG 130 >gi|149173757|ref|ZP_01852386.1| flagellar hook basal body protein flgG [Planctomyces maris DSM 8797] gi|148847287|gb|EDL61621.1| flagellar hook basal body protein flgG [Planctomyces maris DSM 8797] Length = 266 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 28/227 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASGKEYLSK--- 68 L +A+N++N+ T ++ + F ++ G N + + +A G + Sbjct: 20 LDIIANNLANSSTTAYKQSRANFEDIFYENFKLPGVQDNQGNITPTGIALGIGTRVQSTE 79 Query: 69 ---EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 E GS + + D A+ GD +F + + TR G F + +G+LV AS Sbjct: 80 GDFEQGSILPSNGTYDLAIVGDGFFRVNDGTQDLYTRAGNFSLNANGNLVMASADKGY-- 137 Query: 126 MASVPIQIPQKDEIFNVGEKGEIS--QKGKV-IATMGLYSVDM---SQGFVRR------E 173 I IPQ + G +S Q+G I T G + +QG VR+ E Sbjct: 138 QLQPTISIPQDAINITISGDGVVSYQQQGSTQIQTAGNIQIARFINNQGLVRQGDNLYTE 197 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +G P+ P + G +++GFLE SN + E+ ++I + F Sbjct: 198 TTGSGPSQFGDPGTEGRG-QLRQGFLEQSNVEPVRELVELIKTQRNF 243 >gi|148976394|ref|ZP_01813100.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] gi|145964217|gb|EDK29473.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] Length = 434 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 23/148 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + L+ A + L+T ++N++N +T GF+ + +F +V N + + G Sbjct: 4 VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVY---SNSLFTNAKTTSGGGAQA 60 Query: 67 SK-----EVGSFISTGTELDFALEGDAWFALESPRGII----LTRDGRFKVTDDGSLVSA 117 S+ GS I T +D + G +FA+ R + LTR+G F + D +V+A Sbjct: 61 SQVAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRMVPEINELTRNGAFHLNKDNYMVTA 120 Query: 118 SGKY-----------PVLDMASVPIQIP 134 + ++ VL A P+ IP Sbjct: 121 NDEFLLGYDVDPNSGEVLSYAPKPLDIP 148 >gi|90415318|ref|ZP_01223252.1| flagellar hook protein FlgE [marine gamma proteobacterium HTCC2207] gi|90332641|gb|EAS47811.1| flagellar hook protein FlgE [marine gamma proteobacterium HTCC2207] Length = 944 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 15/140 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L A +L+ ++N++N+ T GF+ F ++ + +++ S V G Sbjct: 2 SFYTSLTGLNAATTQLAVTSNNIANSGTGGFKRSDTDFGDIFAT--SPLEKASSVVGRGV 59 Query: 64 EYLSKEVGSFISTGT------ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 KEV S G LD A+ GD +F LES G I TR+G F + + +V+ Sbjct: 60 SL--KEVSQEFSQGNIEFSANSLDLAITGDGFFPLESSDGTKIYTRNGAFMLNEQNQMVN 117 Query: 117 ASGKYPVLDMASVPIQIPQK 136 ++G+ + S+P+ K Sbjct: 118 SAGQA----LQSLPVDSTNK 133 >gi|313901443|ref|ZP_07834901.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] gi|313468293|gb|EFR63749.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] Length = 406 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 18/158 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----------VGAIK 49 M S G++ + R+ + +N++N +TVG+++ +V F E+ G + Sbjct: 1 MMRSLYAGISGLQNHQLRMDVIGNNIANVNTVGYKSSRVTFKELFNQTLRGASAPAGPAR 60 Query: 50 ---NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGR 105 N I + G + + + G+ TG D A++GD +F L+ + G TR G Sbjct: 61 GGTNPIQIGLGTALGGIDVI-HQAGNPQVTGVVTDMAIQGDGFFVLQDATGGYAYTRAGD 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 F++ +G LV+A G VL + +P +D + N+G Sbjct: 120 FRLDAEGYLVNADGLR-VLGWQAQGGVLPARDAL-NLG 155 >gi|291334032|gb|ADD93707.1| flagellar basal body FlaE domain protein [uncultured marine bacterium MedDCM-OCT-S04-C749] Length = 210 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 85/209 (40%), Gaps = 34/209 (16%) Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVSASG 119 G S GS I T D AL G+ F L++P + TR+G F + D G L S++ Sbjct: 2 GASRRSDGQGSIIDTDNRTDLALLGNGMFILKNPNSVTPSFTRNGTFSLDDAGFLRSSND 61 Query: 120 KY----PVLDM----------ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL---YS 162 + P++D PIQI K E + E I G++ A+ G Y Sbjct: 62 AFVMGSPLVDGLFGPTPAELDGLSPIQIQLKREDVPMSEL-RILGDGRIEASYGTEVSYP 120 Query: 163 VDMSQGFVRRENSGI-------------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 V V N+G+ S + DL ++K G LE SN N E Sbjct: 121 VSTVALGVFSNNNGLKELGGGIYAQTDKSGAVNLGAPADLGYASLKSGGLEASNVNITDE 180 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + MI Q+FN L+ N + M+E + Sbjct: 181 LTAMIKAQQQFNGSARLMQTNSE-MVEKL 208 >gi|114707045|ref|ZP_01439944.1| flagellar hook protein E [Fulvimarina pelagi HTCC2506] gi|114537595|gb|EAU40720.1| flagellar hook protein E [Fulvimarina pelagi HTCC2506] Length = 390 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 8/136 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F ++ A +LS V+DN++N+ T G++ V+FS +V + V S Sbjct: 7 FRTSVSGMNAQSNKLSAVSDNIANSATTGYKRADVEFSSLVINSGGRGNYTSGSVLSQTR 66 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF-----KVTDDGSLVSAS 118 Y G +T ++ D A+ GD +F +E G TR G F T + LV+A+ Sbjct: 67 YDISTQGLVTTTSSKTDLAISGDGFFVVEDQNGQPFFTRAGSFVQRTEPDTGETFLVNAA 126 Query: 119 GKYPVLDMASVPIQIP 134 G L + P+Q+P Sbjct: 127 GYK--LTGQNGPVQVP 140 >gi|158321569|ref|YP_001514076.1| hypothetical protein Clos_2549 [Alkaliphilus oremlandii OhILAs] gi|158141768|gb|ABW20080.1| protein of unknown function DUF1078 domain protein [Alkaliphilus oremlandii OhILAs] Length = 264 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 25/135 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------------IKNDID 53 G+ AQ + + T+++N++N +T G++ KV+F +++ A + + Sbjct: 10 GMKAQ---QLNMDTISNNLANVNTTGYKKQKVEFKDLLYANMRTTNLVDGEGSPVNLQVG 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT--- 109 + VA+ + + + G+ T D A+ G+ +F +E+P G TRDG FK++ Sbjct: 67 HGVMPVATTRLFTT---GNLERTDNPFDMAINGEGFFVIEAPSGDRFYTRDGNFKLSVEG 123 Query: 110 DDGSLVSASGKYPVL 124 D+ LV++ G Y V+ Sbjct: 124 DEMRLVTSDG-YTVV 137 >gi|254496889|ref|ZP_05109737.1| flagellar basal body rod protein FlgG [Legionella drancourtii LLAP12] gi|254353908|gb|EET12595.1| flagellar basal body rod protein FlgG [Legionella drancourtii LLAP12] Length = 261 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 32/190 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GA--IKNDIDQKISF 58 GL AQ E+ ++T+A+N++N +T G++ + +F +++ GA +N I Sbjct: 11 GLEAQ---EKTIATIANNLANVNTTGYKKDRAQFEDLLYQNTSQAGAQSSENSIIPTGIN 67 Query: 59 VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 +G +S E GS T D A++G +F + P G TR+G F + G Sbjct: 68 TGTGVHLVSTQKLFEQGSIQHTNNAYDVAIQGQGFFTILMPDGTQAYTRNGAFSIDSTGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V + G Y + ++P Q +G ISQ G V AT+ + + G ++ Sbjct: 128 VVDSHG-YLLQPAITLPAQT--------LGIT--ISQDGVVSATVAGSTTPTNLGTIQLT 176 Query: 174 N----SGISP 179 N +G+ P Sbjct: 177 NFMNPAGLQP 186 >gi|15639714|ref|NP_219164.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025952|ref|YP_001933724.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum SS14] gi|6015169|sp|O07884|FLGE_TREPA RecName: Full=Flagellar hook protein flgE gi|2196893|gb|AAB61251.1| FlgE [Treponema pallidum] gi|3323028|gb|AAC65692.1| flagellar hook protein (flgE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018527|gb|ACD71145.1| flagellar hook protein [Treponema pallidum subsp. pallidum SS14] gi|291060091|gb|ADD72826.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum str. Chicago] Length = 463 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T GF+ +V F ++ I Q++S A Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDL-------ISQQLSAAA 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 E + KEVG + +TG D +++G +F L+S T Sbjct: 54 RPNEEVGGVNPKEVGLGVLIASIDTVHTQGALQTTGINTDVSIQGSGFFVLKSGEKTFFT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V + G+LV+ Sbjct: 114 RAGAFGVDNAGTLVN 128 >gi|28211323|ref|NP_782267.1| flagellar hook protein flgE [Clostridium tetani E88] gi|28203763|gb|AAO36204.1| flagellar hook protein flgE [Clostridium tetani E88] Length = 365 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 37/153 (24%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISFV 59 G++ A + +L + +N++N +T F+ +++F +V+ GA N S V Sbjct: 31 GISGLKANQTKLDVIGNNIANVNTTAFKNQRIRFQDVLSQNLKFGTGASANVGGTNPSQV 90 Query: 60 ASGKEYLSKEV----GSFISTGTELDFALEGDAWFAL---------------ESPRG--- 97 G E + G+ TG LDFA++GD +F + E+ +G Sbjct: 91 GLGVEVAGIDTVVSQGNMQPTGRNLDFAVDGDGYFVVARGKQEGKIEIEKDDEAKKGEVK 150 Query: 98 ------IILTRDGRFKVTDDGSLVSASGKYPVL 124 + TRDG F + D G L+++ G Y VL Sbjct: 151 ASDGLEVHYTRDGSFGLDDFGQLLTSDG-YRVL 182 >gi|116626490|ref|YP_828646.1| flagellar basal-body rod protein FlgG [Candidatus Solibacter usitatus Ellin6076] gi|116229652|gb|ABJ88361.1| flagellar basal-body rod protein FlgG [Candidatus Solibacter usitatus Ellin6076] Length = 263 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 28/159 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------- 58 G+ AQ + + +A N++N +T G++ + +F ++ I + Q S Sbjct: 11 GMTAQ---QLNVDNIAHNLANANTAGYKMRRAQFQDL---IYQTVVQPGSASGQQTTVPT 64 Query: 59 ---VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 V G S E+ GSF T LD ++G +F + P G + TR G F Sbjct: 65 GLQVGLGTRTSSNEILFTQGSFAQTDNPLDLVIQGKGFFQVRQPSGQLAYTRSGAFHCDR 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 DG++V+ G + I +P + ++ + G +S Sbjct: 125 DGNIVTQDG-----NTLEPQITVPAAAQQISIAQDGTVS 158 >gi|134280724|ref|ZP_01767434.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|167725932|ref|ZP_02409168.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei DM98] gi|125657220|gb|ABN48708.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei] gi|134247746|gb|EBA47830.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] Length = 262 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 56/271 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISF----- 58 GL AQ A +L VA+N++N +TVGF+ +V F ++ ++ +DQ + Sbjct: 11 GLQAQDA---KLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPSGIQ 67 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + + GS +TG LD A+ G + + G TR G+ + +G Sbjct: 68 MGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGL 127 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 LV+A G +P+Q IP+ +GE G ++ ATM S G Sbjct: 128 LVNAQG---------LPLQPEISIPENAADIAIGENGIVA------ATMPGASSPSEVGQ 172 Query: 170 VRREN-------SGISPNI--------PPT---PLEDLSGVTVKRGFLEDSNANSMYEMG 211 ++ N + N+ PP P D+ G +K+G LE SN + EM Sbjct: 173 IQLANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGSNVQVVEEMV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 MI Q+ + T + +ML+ + A Sbjct: 232 DMIA-AQRTYEMNTKVLSAADNMLQQLSQAA 261 >gi|326386931|ref|ZP_08208545.1| Flagellar basal-body rod FlgF [Novosphingobium nitrogenifigens DSM 19370] gi|326208611|gb|EGD59414.1| Flagellar basal-body rod FlgF [Novosphingobium nitrogenifigens DSM 19370] Length = 247 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 15/150 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++A + ++QR+ +A+NM+N+ T GFR + + V ++K + + + S Sbjct: 11 GMSASM-VQQRV--IANNMANSQTTGFRAEMLAATPV--SLKGSGLEARAMTDAEVRGAS 65 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 + G TG LD A GD A+++ G TR G +G LV+ PVL Sbjct: 66 MKQGEMTQTGNPLDVAFNGDTMMAVQARDGTEAYTRRGDLTADANGMLVNGD-NAPVLG- 123 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 S PI +P +G K IS G V+A Sbjct: 124 ESGPITVP-------LGSKLTISPDGTVLA 146 >gi|311105937|ref|YP_003978790.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans A8] gi|310760626|gb|ADP16075.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans A8] Length = 261 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 19/145 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKEYLSKE 69 + +++N++N T GF+ + F +++ GA D Q S + +G + E Sbjct: 19 MDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDATQLPSGLQLGTGARVAATE 78 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ +TG+E+D A+ G + +E P G TRDG + +G L + SG Sbjct: 79 RIHTAGNLNNTGSEMDIAINGRGFLQIELPDGTQAYTRDGALQRDQNGQLTTVSGY---- 134 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS 149 + P+ IP ++G G +S Sbjct: 135 -VIQPPMNIPDNALSISIGNDGIVS 158 >gi|94500241|ref|ZP_01306774.1| Flagellar hook protein FlgE [Oceanobacter sp. RED65] gi|94427540|gb|EAT12517.1| Flagellar hook protein FlgE [Oceanobacter sp. RED65] Length = 1240 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FNIGL+ A L +N++N TVGF+ + +F++V +G + + Sbjct: 2 AFNIGLSGIRAASTDLEVTGNNVANASTVGFKESRAEFADVYTTTILGTGSKPVGSGV-L 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + ++ S+ G+ T LD A++G+ +F L TR G F + DG +V+ S Sbjct: 61 VDNVRQEFSQ--GNISGTENALDMAIDGNGFFILNDNGTESYTRAGIFGLDKDGFVVANS 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|146296289|ref|YP_001180060.1| hypothetical protein Csac_1266 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409865|gb|ABP66869.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 484 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 25/126 (19%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------------KNDIDQKISF 58 A + R+ + DN++N +TVGF++ +V F+ V ++ N + + Sbjct: 14 AHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVIKAASAPDTTSGRGGSNPMQIGLGV 73 Query: 59 -VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTDDGS 113 VAS +++ GS T D A+EGD +F + +PR TR G F + G+ Sbjct: 74 SVASVDMNMTR--GSLQRTDNPTDLAIEGDGFFVVGGDGRAPR---FTRAGNFSLDKMGN 128 Query: 114 LVSASG 119 LV+A+G Sbjct: 129 LVTANG 134 >gi|170748125|ref|YP_001754385.1| flagellar hook protein FlgE [Methylobacterium radiotolerans JCM 2831] gi|170654647|gb|ACB23702.1| flagellar basal body FlaE domain protein [Methylobacterium radiotolerans JCM 2831] Length = 407 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 23/127 (18%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQ 54 + G++ A RL TVADN+ N +T G++ +FS ++ G++ + Sbjct: 7 LHAGVSGMNAQSNRLGTVADNIQNQNTTGYKRASTEFSSLLIDPSPGSYDAGSVDTVVRH 66 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD-G 112 +IS E G+ +T + D ++G+ +F ++ G LTR G F V G Sbjct: 67 RIS-----------EEGTGTATNSPTDLTIKGNGFFVVKDGSGRSYLTRAGNFVVDGQTG 115 Query: 113 SLVSASG 119 LV+A+G Sbjct: 116 DLVNAAG 122 >gi|52841451|ref|YP_095250.1| flagellar hook protein FlgE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628562|gb|AAU27303.1| flagellar hook protein FlgE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 437 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG-- 62 FN L+ A + L + +N++N+ T+GF+ + +F+++ + + V G Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSA--YGSGSNAVGGGVK 60 Query: 63 --KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + S G+ ++ LD A+ G +F L I TR G+FK+ ++ +V+A+ + Sbjct: 61 LSRVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKIYTRAGQFKLNNENYIVNANNQ 120 >gi|121534935|ref|ZP_01666754.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] gi|121306534|gb|EAX47457.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] Length = 247 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 9/84 (10%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G STG LD A++G +F + +P G+ TR+G F +G LV+ +G Y V+ A P Sbjct: 80 GMMRSTGNALDLAIDGRGFFVVATPAGLRYTRNGAFTRNSEGELVTQAG-YRVMGQAG-P 137 Query: 131 IQIPQKDEIFNVGEKGEISQKGKV 154 +++ N G K I G+V Sbjct: 138 VRL-------NSGAKVTIDADGRV 154 >gi|289670506|ref|ZP_06491581.1| flagellar hook protein FlgE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 142 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 3 FNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRVS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 63 NVAQQF---SQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 >gi|300854230|ref|YP_003779214.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] gi|300434345|gb|ADK14112.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] Length = 255 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 31/241 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M SF ++ + E + + +N++N +TVGF+ ++ + + D+ Sbjct: 1 MIRSFYSAVSGMITQEAKQDVITNNLANANTVGFKQDDLRVKSFNDMLLQNYDKTEGNRS 60 Query: 56 ----ISFVASGKEYLSKEVG----SFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 I ++ G S + G S STG DFA++G +F + G TRDG F Sbjct: 61 VRNIIGSISLGSGIDSVKTGFTQGSIDSTGVSTDFAIDGRGFFTVRGQDGKEYYTRDGHF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG-------EKGEISQKGKVIATMG 159 V +G LV+ +G VL + + + NVG + G I+ G + Sbjct: 121 HVNTNGVLVNDAGD-SVLARNTRTGALGE----MNVGNGNMTSDDHGNINIDG--TPSYK 173 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 LY+VD + + + N+ + V V++ LE SN N + M Q++ + Sbjct: 174 LYTVDFND---YNTLTKVGDNLYTGTNAAETNVVVRQKSLEKSNVNIVNTMSQLMTTMRS 230 Query: 220 F 220 F Sbjct: 231 F 231 >gi|251799752|ref|YP_003014483.1| hypothetical protein Pjdr2_5791 [Paenibacillus sp. JDR-2] gi|247547378|gb|ACT04397.1| protein of unknown function DUF1078 domain protein [Paenibacillus sp. JDR-2] Length = 275 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/241 (21%), Positives = 113/241 (46%), Gaps = 35/241 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-----KISFVASGKEYLSK 68 AL+Q+L +ADN++N +TVG++ + F +++ + D +++ + + + S+ Sbjct: 14 ALQQKLDMLADNIANVNTVGYKRKEATFEDLLNNTRKQPDAFNQPGRLTSLNFNQGWGSR 73 Query: 69 --------EVGSFISTGTELDFALEGDAWF--ALESPRGIILTRDGRFKVT---DDGSLV 115 + G+ +T + D A+EGDA F A+ + TR+G ++T + +++ Sbjct: 74 LAMIQPNLQQGTIKTTEKDTDLAIEGDALFEVAVNANGDRAYTRNGALQLTVAANGDTIL 133 Query: 116 SASGKYPVLDMASV---PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 + YPV+ P+ +P ++ V G +T+ L S+ + Q Sbjct: 134 ATPEGYPVVANTPAGEGPLVVPSGYQL-RVNADGTAEGVATDGSTIELGSIKLVQATRPA 192 Query: 173 ENSGISPNIPPTP--------LEDLS-----GVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + ++ N+ L++++ G+ +++G LE SN N EM ++I++ + Sbjct: 193 ALTLVADNLYEIADGINVADVLQNVTPNGENGIALRQGALEQSNVNLGDEMTELINVQRA 252 Query: 220 F 220 + Sbjct: 253 Y 253 >gi|254182892|ref|ZP_04889485.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|254299684|ref|ZP_04967133.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|157809479|gb|EDO86649.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|184213426|gb|EDU10469.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] Length = 262 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 56/271 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISF----- 58 GL AQ A +L VA+N++N +TVGF+ +V F ++ ++ +DQ + Sbjct: 11 GLQAQDA---KLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPSGIQ 67 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + + GS +TG LD A+ G + + G TR G+ + +G Sbjct: 68 MGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGL 127 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 LV+A G +P+Q IP+ +GE G ++ ATM S G Sbjct: 128 LVNAQG---------LPLQPEISIPENATDIAIGENGIVA------ATMPGASSPSEVGQ 172 Query: 170 VRREN-------SGISPNI--------PPT---PLEDLSGVTVKRGFLEDSNANSMYEMG 211 ++ N + N+ PP P D+ G +K+G LE SN + EM Sbjct: 173 IQLANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGSNVQVVEEMV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 MI Q+ + T + +ML+ + A Sbjct: 232 DMIA-AQRTYEMNTKVLSAADNMLQQLSQAA 261 >gi|315636308|ref|ZP_07891558.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] gi|315479397|gb|EFU70080.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] Length = 723 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 13/117 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GLA+Q + ++N++N +TVG++ ++ F++ + +N I K S+V ++ + Sbjct: 11 GLASQTTA---IDNESNNVANVNTVGYKASRISFADQI--YQNQIG-KGSYVQDAEKLFT 64 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVTDDGSLVSASG 119 + GS TG + D AL+GD +F + + + TR G ++ D G+L +A G Sbjct: 65 Q--GSMKVTGVDYDVALQGDGFFTVINKNTLGTAETFYTRAGNLRMGDSGTLQTADG 119 >gi|332296516|ref|YP_004438439.1| flagellar basal-body rod protein FlgG [Thermodesulfobium narugense DSM 14796] gi|332179619|gb|AEE15308.1| flagellar basal-body rod protein FlgG [Thermodesulfobium narugense DSM 14796] Length = 262 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 19/144 (13%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKISFVASGKEYLSKEV- 70 + +N++N +T GF+T + +F +++ A N + + + + + Sbjct: 21 ITNNLANVNTTGFKTARAEFEDLMYQEVRPAGATSASGNMLPTGLEIGLGSRPVATVRIF 80 Query: 71 --GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG +LD A++GD +F + P G TR G F + G +V+ G + Sbjct: 81 TEGPLQQTGNQLDLAIQGDGFFQVTLPDGSTAYTRAGNFSLDSAGEIVTPEGY-----LL 135 Query: 128 SVPIQIPQKDEIFNVGEKGEISQK 151 I +P +VG+ G +S K Sbjct: 136 QPSIVVPTNAVSISVGKDGSVSAK 159 >gi|91791414|ref|YP_561065.1| flagellar basal body rod protein-like protein [Shewanella denitrificans OS217] gi|91713416|gb|ABE53342.1| Flagellar basal body rod protein-like protein [Shewanella denitrificans OS217] Length = 215 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 15/113 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ QL Q L+T ++N++N +T G+ + F++V+ A + + + S Sbjct: 9 GINTQL---QSLATTSNNVANANTPGYLR-QTSFTQVLDAQ----------IQTQTQVSS 54 Query: 68 KEV-GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 K++ G+ TG DFA+ G + F +E + LT+DGRF + + G LV SG Sbjct: 55 KQLSGAIKQTGNVYDFAVLGKSLFVVELLGELRLTQDGRFHLNEAGDLVHISG 107 >gi|161485722|ref|NP_660672.3| flagellar basal body rod protein FlgF [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008455|sp|Q8K9K5|FLGF_BUCAP RecName: Full=Flagellar basal-body rod protein flgF gi|21623236|gb|AAM67883.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 249 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 5/107 (4%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 + A + L + + +A+N++N TVGF K F+ + +N + K ++ + KEY + Sbjct: 9 MNAAIKLLDKQAVIANNLANISTVGF---KESFNLFIKD-RNLQNLKKTYNQNVKEYYNF 64 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 G+ I T LD ++ + W A++ G T++G K+ +G + Sbjct: 65 YPGTLIHTQRNLDLVIKNNGWLAIKDINGQEAYTKNGHIKINKEGKM 111 >gi|157738165|ref|YP_001490849.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] gi|157700019|gb|ABV68179.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] Length = 723 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 13/117 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GLA+Q + ++N++N +TVG++ ++ F++ + +N I K S+V ++ + Sbjct: 11 GLASQTTA---IDNESNNVANVNTVGYKASRISFADQI--YQNQIG-KGSYVQDAEKLFT 64 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVTDDGSLVSASG 119 + GS TG + D AL+GD +F + + + TR G ++ D G+L +A G Sbjct: 65 Q--GSMKVTGVDYDVALQGDGFFTVINKNTLGTAETFYTRAGNLRMGDSGTLQTADG 119 >gi|157371205|ref|YP_001479194.1| flagellar basal body rod protein FlgG [Serratia proteamaculans 568] gi|157322969|gb|ABV42066.1| flagellar basal-body rod protein FlgG [Serratia proteamaculans 568] Length = 260 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 114/266 (42%), Gaps = 48/266 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G + TRDG F+ Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDIAIKGQGFFQVMMPDGTLAYTRDGSFQRDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIATM-- 158 +G LV+ASG I IP VG G +S Q G++ T Sbjct: 125 NGQLVTASGF-----QVQPAIIIPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFI 179 Query: 159 ---GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL S M + + S +PN TP + +G+ + +G++E SN N E+ MI Sbjct: 180 NDSGLES--MGENLYQETESSGAPN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 TQ+ I + ML+ + + Sbjct: 236 -TQRAYEINSKAVSTSDQMLQKLTQL 260 >gi|167905092|ref|ZP_02492297.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei NCTC 13177] Length = 258 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 56/271 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISF----- 58 GL AQ A +L VA+N++N +TVGF+ +V F ++ ++ +DQ + Sbjct: 7 GLQAQDA---KLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPSGIQ 63 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + + GS +TG LD A+ G + + G TR G+ + +G Sbjct: 64 MGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGL 123 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 LV+A G +P+Q IP+ +GE G ++ ATM S G Sbjct: 124 LVNAQG---------LPLQPEISIPENATDIAIGENGIVA------ATMPGASSPSEVGQ 168 Query: 170 VRREN-------SGISPNI--------PPT---PLEDLSGVTVKRGFLEDSNANSMYEMG 211 ++ N + N+ PP P D+ G +K+G LE SN + EM Sbjct: 169 IQLANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGSNVQVVEEMV 227 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 MI Q+ + T + +ML+ + A Sbjct: 228 DMIA-AQRTYEMNTKVLSAADNMLQQLSQAA 257 >gi|294339843|emb|CAZ88206.1| putative Flagellar basal body FlaE (FlgE) [Thiomonas sp. 3As] Length = 415 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 12/143 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++F L+ A L + +N++N +TVGF++ +F++ A + V G Sbjct: 2 STFQTALSGLQAASTDLQVMGNNIANANTVGFKSSNAQFADTYAAAIAGTSPQYGQVGIG 61 Query: 63 KEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + G+ ST LD A+ G +F + R+G+F++ +G +V A+ Sbjct: 62 TSVATVAQQFSQGNIESTSNPLDVAINGSGFFQFNYNGATVYGRNGQFQLDQNGYIVDAA 121 Query: 119 GKY--------PVLDMASVPIQI 133 G VL S P+QI Sbjct: 122 GGQLIGTPAVSGVLTGGSGPLQI 144 >gi|238799107|ref|ZP_04642563.1| Flagellar hook protein FlgE [Yersinia mollaretii ATCC 43969] gi|238717054|gb|EEQ08914.1| Flagellar hook protein FlgE [Yersinia mollaretii ATCC 43969] Length = 420 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF+ V F+++ + + K++ + +++ G+ Sbjct: 12 AASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGIT--QDF---NDGTA 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ + +F ++ S GI R+G+FK+ D ++V+ A+G P Sbjct: 67 TTTNRRLDLAISQNGFFRMQDSSGGIFYARNGQFKLDADRNIVNMQGLSLTGYPATGTPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + +P+ IPQ Sbjct: 127 TIQQGANPIPLSIPQ 141 >gi|22126390|ref|NP_669813.1| flagellar hook protein FlgE [Yersinia pestis KIM 10] gi|45441409|ref|NP_992948.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|51596011|ref|YP_070202.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|108807173|ref|YP_651089.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|108812483|ref|YP_648250.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|145598610|ref|YP_001162686.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|149366251|ref|ZP_01888286.1| flagellar hook protein FlgE [Yersinia pestis CA88-4125] gi|153950658|ref|YP_001401290.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|162421636|ref|YP_001606473.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165925992|ref|ZP_02221824.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. F1991016] gi|165938693|ref|ZP_02227248.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. IP275] gi|166010935|ref|ZP_02231833.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. E1979001] gi|166210871|ref|ZP_02236906.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. B42003004] gi|167401045|ref|ZP_02306548.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420383|ref|ZP_02312136.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425748|ref|ZP_02317501.1| flagellar hook protein FlgE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024647|ref|YP_001721152.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis YPIII] gi|186895114|ref|YP_001872226.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis PB1/+] gi|218928922|ref|YP_002346797.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|229896242|ref|ZP_04511412.1| flagellar hook protein FlgE [Yersinia pestis Pestoides A] gi|229897177|ref|ZP_04512333.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897903|ref|ZP_04513054.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. India 195] gi|229902865|ref|ZP_04517982.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|270486645|ref|ZP_06203719.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294504030|ref|YP_003568092.1| flagellar hook protein [Yersinia pestis Z176003] gi|21959376|gb|AAM86064.1|AE013853_12 hook protein [Yersinia pestis KIM 10] gi|45436269|gb|AAS61825.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|51589293|emb|CAH20914.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|108776131|gb|ABG18650.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|108779086|gb|ABG13144.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|115347533|emb|CAL20442.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|145210306|gb|ABP39713.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|149292664|gb|EDM42738.1| flagellar hook protein FlgE [Yersinia pestis CA88-4125] gi|152962153|gb|ABS49614.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|162354451|gb|ABX88399.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165913307|gb|EDR31929.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. IP275] gi|165922196|gb|EDR39373.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. F1991016] gi|165990279|gb|EDR42580.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. E1979001] gi|166208051|gb|EDR52531.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. B42003004] gi|166962078|gb|EDR58099.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049434|gb|EDR60842.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055147|gb|EDR64944.1| flagellar hook protein FlgE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751181|gb|ACA68699.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis YPIII] gi|186698140|gb|ACC88769.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis PB1/+] gi|229680312|gb|EEO76411.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|229688944|gb|EEO81009.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. India 195] gi|229693514|gb|EEO83563.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701165|gb|EEO89194.1| flagellar hook protein FlgE [Yersinia pestis Pestoides A] gi|262361784|gb|ACY58505.1| flagellar hook protein [Yersinia pestis D106004] gi|262366080|gb|ACY62637.1| flagellar hook protein [Yersinia pestis D182038] gi|270335149|gb|EFA45926.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294354489|gb|ADE64830.1| flagellar hook protein [Yersinia pestis Z176003] gi|320015467|gb|ADV99038.1| flagellar hook protein FlgE [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 428 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 72/144 (50%), Gaps = 18/144 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + ++ Sbjct: 3 FSQAVSGMNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGIT--QD 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS------- 116 + G+ +T LD A+ + +F ++ S GI R+G+FK+ ++ ++V+ Sbjct: 61 F---NDGTATTTNRRLDLAISQNGFFRMQDSSGGIYYARNGQFKLDENRNIVNMQGLNLT 117 Query: 117 ---ASGKYPVLDMAS--VPIQIPQ 135 A+G P + + VP+ IPQ Sbjct: 118 GYPATGTPPTVQQGANPVPLSIPQ 141 >gi|126444737|ref|YP_001061248.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 668] gi|126224228|gb|ABN87733.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 668] Length = 262 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 56/271 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISF----- 58 GL AQ A +L VA+N++N +TVGF+ +V F ++ ++ +DQ + Sbjct: 11 GLQAQDA---KLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPSGIQ 67 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + + GS +TG LD A+ G + + G TR G+ + +G Sbjct: 68 MGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGDTGYTRAGQLSINAEGL 127 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 LV+A G +P+Q IP+ +GE G ++ ATM S G Sbjct: 128 LVNAQG---------LPLQPEISIPENATDIAIGENGIVA------ATMPGASSPSEVGQ 172 Query: 170 VRREN-------SGISPNI--------PPT---PLEDLSGVTVKRGFLEDSNANSMYEMG 211 ++ N + N+ PP P D+ G +K+G LE SN + EM Sbjct: 173 IQLANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGSNVQVVEEMV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 MI Q+ + T + +ML+ + A Sbjct: 232 DMIA-AQRTYEMNTKVLSAADNMLQQLSQAA 261 >gi|78062976|ref|YP_372884.1| flagellar hook protein FlgE [Burkholderia sp. 383] gi|77970861|gb|ABB12240.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 414 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 18/148 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGK 63 + GL+ L + +N++N +TVGF+ + F+++ ++ + +I G Sbjct: 3 YQQGLSGLAGAANHLDVIGNNIANANTVGFKQGRANFADMYANSVATSTNTQIGI---GT 59 Query: 64 EYLSKE----VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +S + G+ ST + LD A+ G+ +F + + +RDG F G++V A Sbjct: 60 RLVSVQQQFGQGTINSTKSSLDIAINGNGFFQMSNNGVTTYSRDGVFHRDKSGAIVDAQN 119 Query: 120 KY----------PVLDMASVPIQIPQKD 137 + + A+VP+Q P + Sbjct: 120 RNLMGYAAGPGGAINTAATVPLQAPTSN 147 >gi|229826311|ref|ZP_04452380.1| hypothetical protein GCWU000182_01683 [Abiotrophia defectiva ATCC 49176] gi|229789181|gb|EEP25295.1| hypothetical protein GCWU000182_01683 [Abiotrophia defectiva ATCC 49176] Length = 495 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 15/134 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKND- 51 M S G+A + ++ + +N++N +TVGF++ FS+V G K Sbjct: 1 MMRSLFSGVAGLKVHQTKMDVIGNNIANVNTVGFKSSSTVFSDVFYQTTQTASGPNKESN 60 Query: 52 ---IDQKISFVASGKEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 ++ K + + +SK + G +T LD + GD++F ++ T++G Sbjct: 61 VGGVNPKQIGLGANVSSISKNITDPGGSQTTNNALDCMINGDSFFVTKNGGRTYFTKNGA 120 Query: 106 FKVTDDGSLVSASG 119 FKV DG+LV++ G Sbjct: 121 FKVDTDGTLVNSEG 134 >gi|221636048|ref|YP_002523924.1| flagellar hook protein FlgE [Thermomicrobium roseum DSM 5159] gi|221157294|gb|ACM06412.1| flagellar hook protein FlgE [Thermomicrobium roseum DSM 5159] Length = 423 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + + + +N++N +T GF+ +V+F++++ G I N + + V Sbjct: 14 AHQTWMDVIGNNIANVNTTGFKVGRVRFTDILSQLVRGASGPTETRGGI-NPLQIGLGAV 72 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + + G+ TG D A++GD +F + + TRDG F + D LV+ S Sbjct: 73 VGAVDTIHTQ-GALQLTGKPSDLAIQGDGFFVVSDGSQTLYTRDGAFDIGSDLRLVNPSN 131 Query: 120 KYPVL 124 + VL Sbjct: 132 GFYVL 136 >gi|89067517|ref|ZP_01155030.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] gi|89047086|gb|EAR53140.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] Length = 433 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 + +S N +A A RL+T+ADN++N+ T G++ F +V N + S Sbjct: 3 ISSSLNASVAGLTANASRLATIADNIANSSTFGYKRATTDFHSMV---LNTTEGTYSAGG 59 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---------ILTRDGRFKVT 109 V + L + GS +ST D A+ G + + + +LT G F+V Sbjct: 60 VRVTTQRLIDQRGSIVSTDNVTDLAVRGRGMMPVSTEAALGTGNASSQFLLTSTGSFRVD 119 Query: 110 DDGSLVSASG 119 D G L S SG Sbjct: 120 DQGYLASQSG 129 >gi|84388091|ref|ZP_00990987.1| flagellar hook protein [Vibrio splendidus 12B01] gi|84377158|gb|EAP94028.1| flagellar hook protein [Vibrio splendidus 12B01] Length = 434 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 23/148 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + L+ A + L+T ++N++N +T GF+ + +F +V + + A G Sbjct: 4 VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSS---SLFTNAKTTAGGGAQA 60 Query: 67 SK-----EVGSFISTGTELDFALEGDAWFALESPRGII----LTRDGRFKVTDDGSLVSA 117 S+ GS I T +D + G +FA+ R + LTR+G F + D +V+A Sbjct: 61 SQVAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDRMVPEINELTRNGAFHLNKDNYMVTA 120 Query: 118 SGKY-----------PVLDMASVPIQIP 134 + ++ VL A P+ IP Sbjct: 121 NDEFLLGYDVDPNSGEVLSYAPKPLDIP 148 >gi|168699693|ref|ZP_02731970.1| flagellar basal body rod protein FlgG [Gemmata obscuriglobus UQM 2246] Length = 263 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 25/187 (13%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ ++T D A+EG+ +F + P G + TRDG ++ G+LV++ G + S Sbjct: 84 GALVNTQNPFDVAVEGEGFFQVTLPSGELRYTRDGALRLNAQGNLVTSDGF-----LISP 138 Query: 130 PIQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDMSQG--------FVRREN 174 + IP + +VG G IS V+ + L G F + Sbjct: 139 QVTIPTQAVSVSVGSDGTISVQNAGALNASTVLGQLTLVRFQNPAGLSAEGRNLFAETAS 198 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 SG +P I TP ++ G T ++GFLE SN + + E+ +I L Q+ T +M Sbjct: 199 SG-TPLI-ATPGQNGVGFT-RQGFLERSNVDVVTELINLI-LAQRAYEFNTRAVRTADNM 254 Query: 235 LEAIRNI 241 L + ++ Sbjct: 255 LASTTDL 261 >gi|270262399|ref|ZP_06190670.1| flagellar basal-body rod protein FlgG [Serratia odorifera 4Rx13] gi|270043083|gb|EFA16176.1| flagellar basal-body rod protein FlgG [Serratia odorifera 4Rx13] Length = 260 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 48/266 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F++ Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSQAYTRDGSFQIDQ 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKVIATM-- 158 +G LV+ASG I IP VG G +S Q G++ T Sbjct: 125 NGQLVTASGF-----QVQPAITIPANALSITVGRDGIVSVTQQGQTAAQQVGQLTLTTFI 179 Query: 159 ---GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL SV + + E+SG +PN TP + +G+ + +G++E SN N E+ MI Sbjct: 180 NDSGLESVGENL-YQETESSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 TQ+ I + ML+ + + Sbjct: 236 -TQRAYEINSKAVSTSDQMLQKLTQL 260 >gi|238764392|ref|ZP_04625342.1| Flagellar hook protein FlgE [Yersinia kristensenii ATCC 33638] gi|238697418|gb|EEP90185.1| Flagellar hook protein FlgE [Yersinia kristensenii ATCC 33638] Length = 437 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF+ V F+++ + + K++ + +++ G+ Sbjct: 12 AASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGIT--QDF---NDGTT 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ + +F ++ S GI R+G+FK+ ++ ++V+ A+G P Sbjct: 67 TTTNRRLDLAISQNGFFRMQDSTGGIFYARNGQFKLDENRNIVNMQGLNLTGYPATGTPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + VP+ IPQ Sbjct: 127 TVQQGANPVPLSIPQ 141 >gi|311033282|ref|ZP_07711372.1| hypothetical protein Bm3-1_22549 [Bacillus sp. m3-13] Length = 280 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 44/247 (17%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQKIS-------FVASG 62 L+++L ++ N++N DTVG++ F E++ N+ D + + V SG Sbjct: 15 LQKQLDLISHNVANVDTVGYKQRSASFQELLAQQSNNQPLAQYDNQTARQSELGIRVGSG 74 Query: 63 ----KEYLSKEVGSFISTGTELDFAL-EGDAWFALE----SPRGIILTRDGRFKVTDDGS 113 K L G +T LDFAL + + +F ++ TR+G F ++ + Sbjct: 75 SGLSKTQLHLTQGPMKATDRMLDFALTKENQFFTVQVTENGQTSTQFTRNGVFYLSPVNN 134 Query: 114 ----LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIAT-MGLYSVDM 165 LV++ G +PVLD PI +P+ + + E G +S G+ IA +G+ V Sbjct: 135 AEVMLVTSEG-HPVLDSDEQPIILPENVKEVKLQESGILSAVMTDGQAIARELGVAEVIR 193 Query: 166 SQGFVRRENSGISPNIPPTPLED-------LSG-----VTVKRGFLEDSNANSMYEMGQM 213 Q R S + +PP + + L G + +++G LE SN + EM +M Sbjct: 194 PQMLEARPGSLYA--LPPENVANQESVVGFLQGGARQDIRMQQGMLEQSNVDLASEMTEM 251 Query: 214 IHLTQKF 220 + + + Sbjct: 252 TLMQRSY 258 >gi|209884526|ref|YP_002288383.1| flagellar basal-body rod protein FlgG [Oligotropha carboxidovorans OM5] gi|209872722|gb|ACI92518.1| flagellar basal-body rod protein FlgG [Oligotropha carboxidovorans OM5] Length = 262 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 25/158 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------I 52 G+AAQ E + +++N++N T G++ F ++ VGA +D I Sbjct: 10 GMAAQ---ELSVQVISNNIANLRTTGYKKQMASFQDLLYEHVQRVGAQASDQGTVLPVGI 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 D G L + G+ + G +L+ A+ G+ +F ++ P TRDG F Sbjct: 67 DIGGGVKTVGTPRLMTQ-GTLLPVGGDLNIAVRGEGYFKIQLPDSTYAYTRDGSFTTDGQ 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G +V+A G + I +PQ + +G++S Sbjct: 126 GRIVNAQGNF-----LQPTIAVPQNASQLTINAQGQVS 158 >gi|170725956|ref|YP_001759982.1| flagellar basal body rod protein FlgF [Shewanella woodyi ATCC 51908] gi|169811303|gb|ACA85887.1| flagellar basal-body rod protein FlgF [Shewanella woodyi ATCC 51908] Length = 247 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 27/217 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L+ A+N++N +T GF+ ++ + + A + ++ F + + G +TG Sbjct: 19 LAVRANNLANANTDGFKA-DMEQARSMQAFGEGLPTRV-FAMTENPSANFSSGPIKTTGR 76 Query: 79 ELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 +LD A+ G W A++ + G TR G G L + G P++ S PI +P Sbjct: 77 DLDIAINGSGWIAVQGADGGEAYTRSGSLSFDTSGLLRNDRGN-PIMG-DSGPIVLPLPI 134 Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSV------DM---SQGFVRRENSGISPNIPP 183 E + + G IS + +VI +G + +M + G R+ + I+P P Sbjct: 135 EKVEIAQDGIISVRPLGATAEVIEEVGRIKLVNPGDGNMMRGADGLFRQMSGEIAPADPR 194 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V V+ G +E SN N++ EM +I + ++F Sbjct: 195 --------VAVESGAVEGSNVNAVDEMVSLIDIQRQF 223 >gi|91976161|ref|YP_568820.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB5] gi|91682617|gb|ABE38919.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB5] Length = 262 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 21/139 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------I 52 G+AAQ E + +++N++N T G++ F ++ VGA +D + Sbjct: 10 GMAAQ---ELNVQVISNNIANMRTTGYKKQTAAFQDLIYDHVRRVGAQASDQGTILPVGV 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 D G + + G+ TG +LD A+ G+ +F ++ P G +RDG F + Sbjct: 67 DIGGGVKTVGTPRMMGQ-GTISPTGNDLDIAIRGEGFFKIQMPDGTFTYSRDGSFTTDNT 125 Query: 112 GSLVSASGKYPVLDMASVP 130 G +V+++G PV ++P Sbjct: 126 GRIVTSNGN-PVQPTITIP 143 >gi|304397206|ref|ZP_07379085.1| flagellar basal-body rod protein FlgG [Pantoea sp. aB] gi|308186395|ref|YP_003930526.1| Flagellar basal-body rod protein flgG [Pantoea vagans C9-1] gi|304355355|gb|EFM19723.1| flagellar basal-body rod protein FlgG [Pantoea sp. aB] gi|308056905|gb|ADO09077.1| Flagellar basal-body rod protein flgG [Pantoea vagans C9-1] Length = 260 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 29/236 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + + +A+N++N T GF+ + F +++ + S Sbjct: 11 GLDAQ---QMNMDVIANNLANVSTNGFKRSRAVFEDLMYQTMRQPGTQSSEQTTLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G ++ E G+ T D A+ G +F ++ P G TRDG F+V +G Sbjct: 68 IGTGVRPVTTERLHTQGNLSQTSNSKDIAINGQGYFQIQMPDGTSAYTRDGAFQVDQNGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIP----QKDEIFNVGEKGEISQKGKVIATMGLYSVD----- 164 LV+ SG +PV ++P +D + +V ++G+ T+ + D Sbjct: 128 LVTNSG-FPVQPGITIPANATSITVSRDGVVSVTQQGQAQAAQVGQLTLSTFMNDAGLDS 186 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + + +P TP ++ +G+ + +G+ E SN N E+ MI + + Sbjct: 187 VGENLYKETQASGAP-TDSTPGQNGAGL-LYQGYTETSNVNVAEELVTMIQTQRAY 240 >gi|261253614|ref|ZP_05946187.1| flagellar hook protein FlgE [Vibrio orientalis CIP 102891] gi|260937005|gb|EEX92994.1| flagellar hook protein FlgE [Vibrio orientalis CIP 102891] Length = 434 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 23/150 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQKISFVAS 61 + L+ A + L+T ++N++N +T GF+ + +F +V K Q + Sbjct: 4 VALSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAKV 63 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSA 117 +++ GS I T +D + G +FA+ +P LTR+G F + D +V+A Sbjct: 64 AQQF---HEGSSIYTNNPMDLRIGGTGFFAVAKDRLTPTSNELTRNGAFHLNKDNYMVTA 120 Query: 118 SGKY-----------PVLDMASVPIQIPQK 136 + ++ VL PI IP++ Sbjct: 121 NDEFLLGYQVNKDTGDVLSYEPSPINIPKE 150 >gi|78047586|ref|YP_363761.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036016|emb|CAJ23707.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 407 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 FN L+ A L+ ++N++N +T GF+ + +F+++ G +N + + Sbjct: 3 FNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRVS 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 63 NVAQQF---SQGNIDPTGRSLDLAVSGEGFFTVWSNGAKMYTRAGNFQTDANGYVVNPQG 119 >gi|293395583|ref|ZP_06639866.1| flagellar hook protein FlgE [Serratia odorifera DSM 4582] gi|291421902|gb|EFE95148.1| flagellar hook protein FlgE [Serratia odorifera DSM 4582] Length = 411 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ V F+++ + + K++ + + G+ Sbjct: 12 AAATNLDVIGNNIANSATAGFKSGSVSFADMFAGSQVGLGVKVAGITQ-----NFNGGTT 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 ST LD A+ + +F ++ S GI +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TSTNRALDVAITENGFFRMQDSDGGIFYSRNGQFKLDENRNLVNMQGLNLTGYPAAGTPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + VP+ IP+ Sbjct: 127 TIQQGADPVPLSIPE 141 >gi|260767924|ref|ZP_05876858.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] gi|260615954|gb|EEX41139.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] Length = 243 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 11/203 (5%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 ++N+SN DT GFR + V ++ + V + + G + TG LD Sbjct: 23 SNNLSNADTAGFRADMERVRSV--PLQGSGFDGRTMVVTNSAATRFDTGDVVKTGRPLDV 80 Query: 83 ALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ GD + +++P G TR G V +G+L S +G + + ++ + QK E Sbjct: 81 AVMGDGYLTVQTPEGGEAYTRAGNIAVDVNGAL-SINGFAVMGENGALVLPDFQKVE--- 136 Query: 142 VGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 V E+G IS G I L V + +++E+ + + PL + V + Sbjct: 137 VSERGRISVIPPGGGAEIEVGTLKLVKANDNPLQKESDSLLHTVDGVPLAADNSVQLAPE 196 Query: 198 FLEDSNANSMYEMGQMIHLTQKF 220 +E SN +++ E+ ++ LT+ F Sbjct: 197 HIEGSNVSAIDELLNVMSLTRNF 219 >gi|294635611|ref|ZP_06714088.1| flagellar basal-body rod protein FlgF [Edwardsiella tarda ATCC 23685] gi|291091063|gb|EFE23624.1| flagellar basal-body rod protein FlgF [Edwardsiella tarda ATCC 23685] Length = 251 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 9/147 (6%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G A+Q +Q ++ A+NM+N+ T GFR V + + + + V + Sbjct: 9 MGAASQTLNQQAIA--ANNMANSTTPGFRAQLAALRAV--PVDGESLETRTLVTASTPMH 64 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 +G T LD AL+ D W A++ P G TR+G ++ G +++A G + D Sbjct: 65 DLSMGKLDYTERPLDVALQQDGWLAVQMPDGSEAYTRNGSLQINPQG-MLTAQGHLVMGD 123 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKG 152 + PI +P + ++ + G I+ G Sbjct: 124 --NGPIAVPDRAQL-TIAADGTITALG 147 >gi|94987008|ref|YP_594941.1| flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] gi|94731257|emb|CAJ54620.1| Flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] Length = 690 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKISFVASGKE 64 G++ L+ ++++ + +N++N +TVGF+ ++ F++ + G I Q V G Sbjct: 10 GVSGLLSHGEKMNVIGNNIANVNTVGFKGQRMDFADFIYQDGFSTAGITQIGRGVGIGAV 69 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSASG 119 + GSF +T D A+ G +F ++ P+G TR G F+ +DG LV G Sbjct: 70 MGNFGQGSFETTTEATDLAIGGRGFFKVK-PQGSETSYYTRAGNFRFNNDGYLVDPHG 126 >gi|330447904|ref|ZP_08311552.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492095|dbj|GAA06049.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 243 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 31/213 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +V+ + GA D + + V + + G I TG L Sbjct: 23 SNNLSNADTAGFRADMERVQSIPLQGA---GFDGR-TMVVTNSAATRFDAGDVIKTGRAL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ GD +F +++ G TR G +V ++G ++ +G +P++ + +P+ + Sbjct: 79 DIAINGDGFFTVQTIVGNEAYTRAGNIRVDEEG-MMRVNG-FPLMSEGEALV-LPEHQNV 135 Query: 140 FNVGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 EIS KG V + + L + +Q +++ + G+ I Sbjct: 136 -------EISDKGVVTVVPPGGGAKLEVGQLKLVDPEFTQ--LQKHSDGLFHPINDQVFA 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + G LE SN +++ E+ ++ LT+ F Sbjct: 187 QDPTVAITAGHLEGSNVSAINELVSVMSLTRNF 219 >gi|307131609|ref|YP_003883625.1| flagellar hook protein flgE [Dickeya dadantii 3937] gi|306529138|gb|ADM99068.1| Flagellar hook protein flgE [Dickeya dadantii 3937] Length = 399 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ TVGF+ + F+++ + + VAS Sbjct: 2 SFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTR---VASVL 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + S GS ST LD A+ G+ ++ L + G ++ +R+G+F + ++V+A G Sbjct: 59 QDFSN--GSITSTSRSLDVAINGNGFYRLLNSNGSVVYSRNGQFTLDSSRNIVNAQGLQL 116 Query: 120 -KYPV 123 YP Sbjct: 117 TGYPA 121 >gi|114320057|ref|YP_741740.1| flagellar basal body FlaE domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226451|gb|ABI56250.1| flagellar basal body FlaE domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 430 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SF L A + L+ DN++N+ T GF+ + +F+++ +G I Q + Sbjct: 2 SFGTSLTGLNAAQSELNITGDNIANSSTWGFKESRPEFADLFASSNLGVTGLAIGQGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 G+++ G F T LD + G +F L I TR G F++ +G + +++ Sbjct: 62 QNVGQQF---SQGQFDFTENSLDLGISGKGFFRLSDDGDISYTRSGAFQLDREGWITNSA 118 Query: 119 GK 120 GK Sbjct: 119 GK 120 >gi|322380410|ref|ZP_08054616.1| flagellar hook protein FlgE [Helicobacter suis HS5] gi|321147200|gb|EFX41894.1| flagellar hook protein FlgE [Helicobacter suis HS5] Length = 601 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 21/124 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDI--DQKISFVASGKEYLSKEVGS 72 + ++++N++N +TVG+R + +F + A + N++ D + VA G +S + G Sbjct: 19 IDSLSNNLANINTVGYRENEPEFKSLFAAHFDSMSNNVTADDRNFGVAKGSNAISDKDGE 78 Query: 73 FISTGTELDFALEGDAWF---------------ALESPRGIILTRDGRFKVTDDGSLVSA 117 ++ + ++ + A +G WF + + TRDG F DG +V+ Sbjct: 79 YMPSDSDFNMAYQGSGWFIVGPNKDGSFEIDKDGYKQSQENFFTRDGNFLRDADGYIVNT 138 Query: 118 SGKY 121 G Y Sbjct: 139 HGYY 142 >gi|322378866|ref|ZP_08053283.1| flagellar hook protein FlgE [Helicobacter suis HS1] gi|321148676|gb|EFX43159.1| flagellar hook protein FlgE [Helicobacter suis HS1] Length = 601 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 21/124 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDI--DQKISFVASGKEYLSKEVGS 72 + ++++N++N +TVG+R + +F + A + N++ D + VA G +S + G Sbjct: 19 IDSLSNNLANINTVGYRENEPEFKSLFAAHFDSMSNNVTADDRNFGVAKGSNAISDKDGE 78 Query: 73 FISTGTELDFALEGDAWF---------------ALESPRGIILTRDGRFKVTDDGSLVSA 117 ++ + ++ + A +G WF + + TRDG F DG +V+ Sbjct: 79 YMPSDSDFNMAYQGSGWFIVGPNKDGSFEIDKDGYKQSQENFFTRDGNFLRDADGYIVNT 138 Query: 118 SGKY 121 G Y Sbjct: 139 HGYY 142 >gi|242238970|ref|YP_002987151.1| flagellar basal body rod protein [Dickeya dadantii Ech703] gi|242131027|gb|ACS85329.1| flagellar basal body rod protein [Dickeya dadantii Ech703] Length = 251 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 35/246 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA L+Q+ S + +N++N T GFR V + +S ++ +S+ Sbjct: 11 AASQTLDQQ-SVITNNLANASTPGFRAQLSAMRAVPVDGPTLPTRTLSIASTPGADMSQ- 68 Query: 70 VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G T LD A++ D W A++ P G TR+G ++ G L +PV+ A Sbjct: 69 -GPLDYTSRPLDVAVQNDGWLAVQLPNGEEAYTRNGSIQIDPTGQLTIQG--FPVVGDAG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG---LYSVDMSQGFVRRENS--GIS 178 P+ +P + I + G ++ G +A +G L D +Q VR ++ +S Sbjct: 126 -PLVVPTQASI-TISANGTVASLGDGDSPNTVAQVGALKLVKGDSTQ-LVRGDDGLFHVS 182 Query: 179 P--------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLI 227 P +P P V V G LE SN N++ + MI ++F + + Sbjct: 183 PAASQQVGNALPADPT-----VRVMPGVLEGSNVNTVESLVDMIGSARRFEMQMKVIASV 237 Query: 228 DENEKS 233 D+N +S Sbjct: 238 DQNAES 243 >gi|254785371|ref|YP_003072800.1| flagellar basal body protein FlgE [Teredinibacter turnerae T7901] gi|237685119|gb|ACR12383.1| Flagellar basal body protein FlgE [Teredinibacter turnerae T7901] Length = 813 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 8/121 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFV 59 FN L+ A L+ +N++N T+GF+ + +F +V +GA N I + Sbjct: 3 FNTALSGIRAASTDLTVTGNNIANASTIGFKRSRAEFGDVFATSVLGAGANAIGSGVQVE 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + + G+ T ELD A+ G+ +F L + +R G F + D G + + G Sbjct: 63 DVAQNF---KQGNVAFTQNELDLAINGNGFFVLSDQGTPVYSRAGTFGLDDQGYVTNNVG 119 Query: 120 K 120 Sbjct: 120 A 120 >gi|192358786|ref|YP_001982400.1| flagellar hook protein FlgE [Cellvibrio japonicus Ueda107] gi|190684951|gb|ACE82629.1| flagellar hook protein FlgE [Cellvibrio japonicus Ueda107] Length = 803 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN L+ A L +N++N T+GF++ + +F +V +G N ++ Sbjct: 2 SFNTALSGIRAANTDLQVTGNNIANASTIGFKSSRAEFGDVYTSTLLGGGANTPGSGVTI 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ G+ T ELD ++ G+ +F +E + TR G F + +G +V+ + Sbjct: 62 QNIRQQFTQ---GNLKFTQNELDLSINGEGFFVVEKNGERLFTRAGTFGLDKNGYIVNGT 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|239828562|ref|YP_002951186.1| hypothetical protein GWCH70_3280 [Geobacillus sp. WCH70] gi|239808855|gb|ACS25920.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. WCH70] Length = 283 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 37/199 (18%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVASGKEY------- 65 L Q+L +++N++N++T GF+ + F E++ ++ D+ +G Y Sbjct: 15 LGQQLDVISNNIANSNTTGFKRRETNFGELLAQQFTNLPNDKATRLTPNGVRYGVGARLA 74 Query: 66 ---LSKEVGSFISTGTELDFALEGDAWFALESPRG------IILTRDGRFKVTDDGS--- 113 L G+ T LD AL + F +G I TR G F +T Sbjct: 75 ETNLVLAQGALTKTDRALDVALAKEGQFFRVLVQGENGAQEIGYTRSGAFYLTPSAENPN 134 Query: 114 ---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 LV++ G +PVLD + PI +P+ + + G I+ +A+ G + Sbjct: 135 ELMLVTSDG-HPVLDENNAPILLPEGFKNITISNNGTIT----AVASDGR--------VM 181 Query: 171 RRENSGISPNIPPTPLEDL 189 RR N GI+ + P L+ + Sbjct: 182 RRANIGITTILRPQLLQSV 200 >gi|254456854|ref|ZP_05070282.1| conserved domain protein [Campylobacterales bacterium GD 1] gi|207085646|gb|EDZ62930.1| conserved domain protein [Campylobacterales bacterium GD 1] Length = 419 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 14/142 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKN 50 M +F G++ + + ++ + DN++N TVGFR +F+ + A + Sbjct: 2 MTQAFYTGISGLKSNQGGINIITDNLANISTVGFRGYNTEFASMFEDNLNTTSKNSATSS 61 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 I + A+ ++++ G + D A+ G+ WF ++ + + TR G F Sbjct: 62 TIGAGVKLQAA---TMNRDQGVIQISDKSTDLAIVGNGWFGIQGEKDTMYTRGGNFTFDR 118 Query: 111 DGSLVSASGKYPVLDMASVPIQ 132 D L++ G Y VL IQ Sbjct: 119 DSDLITQDGFY-VLGTMGANIQ 139 >gi|117928057|ref|YP_872608.1| hypothetical protein Acel_0849 [Acidothermus cellulolyticus 11B] gi|117648520|gb|ABK52622.1| protein of unknown function DUF1078 domain protein [Acidothermus cellulolyticus 11B] Length = 398 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 18/127 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDI 52 G++ A + L V +N++N +TVGF+ +V+F + + G + Sbjct: 8 GVSGLRAHQTMLDVVGNNIANVNTVGFKASQVEFEDTLSQMLRAAGAPQGVQGGTNPAQV 67 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + A + G +TG + D ++GD +F L+ + TR+G F +G Sbjct: 68 GLGVQIAAISTTFTQ---GPAETTGVDTDLMIQGDGFFVLDDGGQRVYTRNGAFSFDANG 124 Query: 113 SLVSASG 119 +LVSA+G Sbjct: 125 NLVSANG 131 >gi|315127351|ref|YP_004069354.1| flagellar basal body rod protein FlgG [Pseudoalteromonas sp. SM9913] gi|315015865|gb|ADT69203.1| flagellar basal body rod protein FlgG [Pseudoalteromonas sp. SM9913] Length = 262 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/252 (21%), Positives = 111/252 (44%), Gaps = 39/252 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + +S +++N++N TVG++ + F +++ G D + Sbjct: 11 GLDAQ---QTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDTEMPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ ++T LD+ + G +F + P G I +R+G+F +G Sbjct: 68 LGAGTKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQPDGNIAYSRNGQFTTDGEGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +V++ Y V + +P + V + GE+S + K A + F+ Sbjct: 128 VVTSGAGYVV----QPEMNVPDDAQSITVSQDGEVSVRIKGQAENVVIGQITISDFINP- 182 Query: 174 NSGISP---------NIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 SG+ P + P++ GV T+ +G LE SN N E+ +I + + Sbjct: 183 -SGLEPIGQNLYTETAVSGAPVQGNPGVEGLGTIIQGSLETSNVNVTEELVNLIETQRVY 241 Query: 221 ---NSITTLIDE 229 + + + +DE Sbjct: 242 EMNSKVISAVDE 253 >gi|28211309|ref|NP_782253.1| flagellar basal body rod protein FlgG [Clostridium tetani E88] gi|28203749|gb|AAO36190.1| flagellar basal-body rod protein flgG [Clostridium tetani E88] Length = 285 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 64/129 (49%), Gaps = 11/129 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDIDQKI--- 56 G +A A +++L +++N++N +T G++ V F +++ + + ++ + Sbjct: 8 GRSAMYAQQEKLDAISNNIANVNTEGYKRQDVSFQDLMNETLDRRGYPVNEEGNRNLIHG 67 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + V +G G+ +TG+ DFA++G+ +F + S R G F + + G+LV Sbjct: 68 TGVKTGPWIRDNTQGTLNNTGSSTDFAIDGNGYFKVFSNDKEYYIRAGNFNLDNKGNLVD 127 Query: 117 ASGKYPVLD 125 +G +D Sbjct: 128 KNGNILEID 136 >gi|328470102|gb|EGF41013.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus 10329] Length = 243 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 106/213 (49%), Gaps = 31/213 (14%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++N+SN DT GFR +V+ E+ G + ++ AS + + S +V + TG L Sbjct: 23 SNNLSNADTAGFRADMERVRSVELQGPGFDGRTMVVTNSASTR-FDSADV---VKTGRAL 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ G+ + A+E+P G TR G ++ G++ S +G +PV+ + P+ +P +I Sbjct: 79 DVAVMGEGYLAVETPAGNEAYTRAGNIQIDTFGAM-SING-FPVVG-ENGPLVVPDYQKI 135 Query: 140 FNVGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 EIS++G V + T+ L +++Q +++E+ + ++ P Sbjct: 136 -------EISERGLVSVIPPGGGAEIAVGTLKLVKPEINQ--LQKESDSLLHSVDGVPFA 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + +E SN +++ E+ ++ LT+ F Sbjct: 187 ADETVQLAPEHIEGSNVSAIDELIGVMSLTRNF 219 >gi|77165838|ref|YP_344363.1| hypothetical protein Noc_2375 [Nitrosococcus oceani ATCC 19707] gi|254433154|ref|ZP_05046662.1| conserved domain protein [Nitrosococcus oceani AFC27] gi|76884152|gb|ABA58833.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207089487|gb|EDZ66758.1| conserved domain protein [Nitrosococcus oceani AFC27] Length = 425 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 +FN L+ A L A+N++N T GF+ + +F+++ + + + V SG Sbjct: 2 AFNTSLSGLNAASSDLDITANNIANASTTGFKRSRGEFADIFAV--SSFGRSQTAVGSGV 59 Query: 63 ---KEYLSKEVGSFISTGTELDFALEGDAWFALESPR----GIILTRDGRFKVTDDGSLV 115 K E G+ T LD A+ G FAL SP ++ +R G F V +G +V Sbjct: 60 LLNKTAQQFEQGNLDFTQNSLDLAISGRGLFAL-SPSLNSDDLVYSRAGAFSVDKEGYVV 118 Query: 116 SASGKY 121 ++SG+Y Sbjct: 119 NSSGQY 124 >gi|56460251|ref|YP_155532.1| flagella basal body rod protein [Idiomarina loihiensis L2TR] gi|56179261|gb|AAV81983.1| Flagella basal body rod protein [Idiomarina loihiensis L2TR] Length = 247 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 28/227 (12%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVAS-GKEYLSKEVGSFISTGTEL 80 A+N++N +T F+ ++ + + A + ++ S S G+ + S G+ +TG + Sbjct: 23 ANNLANANTTAFKG-DLQQARAMQAFGEGLPTRVFSMTESPGQNFAS---GAIQTTGRNM 78 Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A++ W A++ G TR+G +V DG L +++G+ + + + PI +P + Sbjct: 79 DVAIKDQGWIAVDDGSGNERYTRNGSLEVGTDGLLKNSTGQTVLGN--NGPIFVPMPIDN 136 Query: 140 FNVGEKGEISQKGKVIATMGLYS-----------VDMSQGFVRRENSGISPNIPPTPLED 188 +G G +S I MG + V+ G + + N G+ Sbjct: 137 LVIGANGNVS-----IRPMGAPANAMEVIDRIKLVNPPNGNMEKGNDGLFKLKDDQQAFA 191 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEK 232 + V ++ G LE SN NS+ EM MI L +++ L+ DEN + Sbjct: 192 DANVKLQIGALEGSNVNSVEEMTHMIALQRQYEMNVKLMKTADENAQ 238 >gi|220932494|ref|YP_002509402.1| flagellar basal-body rod protein FlgG [Halothermothrix orenii H 168] gi|219993804|gb|ACL70407.1| flagellar basal-body rod protein FlgG [Halothermothrix orenii H 168] Length = 262 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 32/233 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + + T+++N++N +T GF+ +V F +++ G I I+ Sbjct: 14 AQQTNIDTISNNLANVNTTGFKKTRVNFQDLMYQHIRQPGTPNSQGGQIPVGIEVGHGVK 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 S + + G+ +T LD +EGD + + P G + TRDG K G +V++ Sbjct: 74 VSATQKIFSP-GNIQNTDNPLDILIEGDGFLQVLLPDGTLAYTRDGSLKRDSMGRIVTSD 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVRR 172 G YP+ I IP+ ++ G I S + + I + L G Sbjct: 133 G-YPI----QPEIYIPEDASSISITSDGTIAVEINGSNQPQQIGQIELARFSNPAGLNSI 187 Query: 173 ENSGISPNIPP-TPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + P + P+ G T+ +GFLE SN + EM MI + + Sbjct: 188 GRNLFKPTVASGDPIVGTPGSPGFGTIAQGFLEMSNVKVVEEMVNMIAAQRAY 240 >gi|296135673|ref|YP_003642915.1| fagellar hook-basal body protein [Thiomonas intermedia K12] gi|295795795|gb|ADG30585.1| fagellar hook-basal body protein [Thiomonas intermedia K12] Length = 414 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 12/143 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++F L+ A L + +N++N +TVGF++ +F++ A + V G Sbjct: 2 STFQTALSGLQAASTDLQVMGNNIANANTVGFKSSNAQFADSYAAAIAGTSPQYGQVGIG 61 Query: 63 KEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + G+ ST LD A+ G +F + R+G+F++ +G +V A+ Sbjct: 62 TSVATVAQQFSQGNIESTSNPLDVAINGSGFFQFNYNGATVYGRNGQFQLDQNGYIVDAA 121 Query: 119 GKY--------PVLDMASVPIQI 133 G VL S P+QI Sbjct: 122 GGQLIGTPAVSGVLTGGSGPLQI 144 >gi|119469952|ref|ZP_01612757.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Alteromonadales bacterium TW-7] gi|119446662|gb|EAW27935.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Alteromonadales bacterium TW-7] Length = 262 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 21/156 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISF- 58 GL AQ + +S +++N++N TVG++ + F +++ G D + Sbjct: 11 GLDAQ---QTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDTEMPSGLM 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G + ++ + G+ ++T LD+ + G +F + P G I +R+G+F DG Sbjct: 68 LGAGAKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQPDGNIAYSRNGQFTTDGDGR 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +V++ Y V + +P + + + GE+S Sbjct: 128 IVTSGSGYVV----QPEMNVPDDAQSITISQDGEVS 159 >gi|329901232|ref|ZP_08272757.1| Flagellar basal-body rod protein flgG [Oxalobacteraceae bacterium IMCC9480] gi|327549164|gb|EGF33756.1| Flagellar basal-body rod protein flgG [Oxalobacteraceae bacterium IMCC9480] Length = 260 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 39/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV- 59 GL AQ + ++ +++N++N T GF+ + F +++ GA + Q S + Sbjct: 11 GLEAQ---QTQMDVISNNLANVSTSGFKRSRAVFEDLLYQTLRQPGAQSSQQTQLPSGLQ 67 Query: 60 -ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 +G ++ E G+ T + D A++G +F + P G TRDG F++ G Sbjct: 68 LGTGVRPVATERIFTQGNLQQTSNDKDVAIQGQGFFQVLLPDGTTAYTRDGSFQIDSQGQ 127 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIAT-MGLYSVDM----- 165 +V++SG V+ A I IP + VG G IS +G AT +G + Sbjct: 128 MVTSSGF--VIQPA---ITIPAAAQSLTVGRDGTISITLQGTAAATQIGALQLATFINPA 182 Query: 166 ---SQG---FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 S+G +V SG + TP + +G+ + +G++E SN + + E+ MI + Sbjct: 183 GLESKGENLYVETGASGTANT--NTPGTNGAGI-LSQGYVETSNVSVVEELVNMIQTQRA 239 Query: 220 F 220 + Sbjct: 240 Y 240 >gi|320538206|ref|ZP_08038101.1| fagellar hook-basal body protein [Treponema phagedenis F0421] gi|320145023|gb|EFW36744.1| fagellar hook-basal body protein [Treponema phagedenis F0421] Length = 452 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 26/120 (21%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS----KEVG 71 + R+ + +N++N +T GF+ +V F ++ I Q++S + E + KEVG Sbjct: 5 QTRMDVIGNNVANVNTTGFKRGRVNFQDL-------ISQQLSGASRPNEEVGGVNPKEVG 57 Query: 72 ---------------SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + +TG D A++G+ +F L+ TR G F V DG+LV+ Sbjct: 58 LGVMVASIDTVHTQGALQTTGINTDIAIQGNGFFILKDGEKSFYTRAGAFGVDRDGTLVN 117 >gi|238785497|ref|ZP_04629480.1| Flagellar hook protein FlgE [Yersinia bercovieri ATCC 43970] gi|238713599|gb|EEQ05628.1| Flagellar hook protein FlgE [Yersinia bercovieri ATCC 43970] Length = 419 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 67/135 (49%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF+ V F+++ + + K++ + +++ G+ Sbjct: 12 AASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGIT--QDF---NDGTA 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ + +F ++ S GI R+G+FK+ D ++++ A+G P Sbjct: 67 TTTNRRLDLAISQNGFFRMQDSSGGIFYARNGQFKLDADRNIINMQGLSLTGYPATGTPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + +P+ IPQ Sbjct: 127 TIQQGANPIPLSIPQ 141 >gi|163742565|ref|ZP_02149951.1| flagellar hook protein FlgE, putative [Phaeobacter gallaeciensis 2.10] gi|161384150|gb|EDQ08533.1| flagellar hook protein FlgE, putative [Phaeobacter gallaeciensis 2.10] Length = 440 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 16/144 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL++++DN++N+ T G++ ++ F +V + V Sbjct: 10 ISSSLNAGVAGLTANASRLASISDNIANSSTAGYKRVQTDFHSMVMSSSGGT-YSAGGVR 68 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES----------PRGIILTRDGRFKVTD 110 + L E G +ST D A+ G + S P+ ++LT F+ Sbjct: 69 TTNVRLIDERGPLVSTSNATDLAVRGRGMLPVTSMNEVETGAANPQ-MMLTTTASFRTNA 127 Query: 111 DGSLVSASG----KYPVLDMASVP 130 DG L + SG +P ++P Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIP 151 >gi|229155343|ref|ZP_04283453.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 4342] gi|228628058|gb|EEK84775.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 4342] Length = 257 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 33/232 (14%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGASGTTSFFVTSKNDETFLTRDGSFTINS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVD-- 164 D L ++SG Y V+ + I+IP+ ++ V G E++Q IA + +VD Sbjct: 123 DRYLQTSSGAY-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 + V+REN + + + DL T VK LE+SN + EM ++ Sbjct: 179 ANNRLVQRENKSFT--LAEGNITDLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|325982371|ref|YP_004294773.1| fagellar hook-basal body protein [Nitrosomonas sp. AL212] gi|325531890|gb|ADZ26611.1| fagellar hook-basal body protein [Nitrosomonas sp. AL212] Length = 423 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF------ 58 F GL+ A L V +N++N +TVG++ + +F+++ N +D S Sbjct: 3 FQQGLSGLSAASTNLDVVGNNIANVNTVGYKQSQAQFTDI---FANSLDGAGSSRTQVGI 59 Query: 59 ---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 VA+ + ++ G T LD A+ G +F + I +R+G+F++ +G L Sbjct: 60 GARVATVAQLFNQ--GDIAPTNNPLDIAINGQGFFRMSDNGVISYSRNGQFRLDGNGFLT 117 Query: 116 SASG 119 ASG Sbjct: 118 DASG 121 >gi|253990125|ref|YP_003041481.1| flagellar basal-body rod protein flgg [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781575|emb|CAQ84738.1| flagellar basal-body rod protein flgg (distal rod protein) [Photorhabdus asymbiotica] Length = 260 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 39/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISF-- 58 GL AQ + + +A+N++N T GF+ + F +++ GA+ ++ + S Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMSSEQTRLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G ++ E G+ T A+ G +F ++ P G TRDG F+ +G Sbjct: 68 IGTGVRPVATERIHSQGNLSGTNNNHHVAIRGKGFFQVQLPDGSSAYTRDGSFQEDQNGQ 127 Query: 114 LVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVIATM-----GLYSV 163 LV+A+G +P + + I D + +V +G+ + Q G+ T GL S+ Sbjct: 128 LVTANGFLVFPTITIPDNATDIAISSDGVVSVKVQGQSAPQQVGQFTLTTFINENGLESI 187 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQK 219 + +V +SG+ P+E+ G+ ++ +LE SN N E+ MI + Sbjct: 188 GENL-YVETSSSGV-------PIENTPGINGAGLLQHKYLETSNVNIAEELVNMIQTQRA 239 Query: 220 F 220 + Sbjct: 240 Y 240 >gi|226327746|ref|ZP_03803264.1| hypothetical protein PROPEN_01619 [Proteus penneri ATCC 35198] gi|225203450|gb|EEG85804.1| hypothetical protein PROPEN_01619 [Proteus penneri ATCC 35198] Length = 406 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L T+ +N+SN+ T GF+ V F++V + K++ ++ Sbjct: 2 SFSQAVSGLNAAAANLDTIGNNISNSATYGFKGASVSFADVFAGSGAGLGVKVAGISQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG--- 119 + + GS +T D A+ G +F +E G+ +R+G F +G L + G Sbjct: 60 ---NFKDGSITTTNRPTDVAISGGGFFRIEDQNGGVFYSRNGEFGKDKNGFLTNMQGMRV 116 Query: 120 -KYPV 123 YPV Sbjct: 117 TGYPV 121 >gi|91791429|ref|YP_561080.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] gi|91713431|gb|ABE53357.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 392 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-ISFV 59 M +F GL+ + + L V++N++N +T G+R + F + +G D D+ + Sbjct: 1 MLQAFYTGLSGLNSYSKNLDNVSNNIANMNTAGYRGMD-SFYQALGG---DSDKPGLGAQ 56 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 SG Y VG TG + D A+ G +FAL + TR G+F+ + LV + Sbjct: 57 ISGLGY-RFSVGDIRQTGNDFDLAITGTGFFALLDGEKVFYTRTGQFEFDQNNVLVDKNT 115 Query: 120 KYPV 123 + V Sbjct: 116 GFKV 119 >gi|16126303|ref|NP_420867.1| flagellar basal body rod protein FlgG [Caulobacter crescentus CB15] gi|221235080|ref|YP_002517516.1| flagellar basal body rod protein FlgG [Caulobacter crescentus NA1000] gi|13637955|sp|Q06172|FLGG_CAUCR RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|13423543|gb|AAK24035.1| flagellar basal-body rod protein FlgG [Caulobacter crescentus CB15] gi|220964252|gb|ACL95608.1| flagellar basal-body rod protein flgG [Caulobacter crescentus NA1000] Length = 262 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 23/159 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G+AAQ + + +++N++N +TVGF+ + +F +++ G I Sbjct: 10 GMAAQ---QLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIVPTGV 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 Q V +G Y E G+ T + LD A++G + + P G TR G F D G Sbjct: 67 QVGGGVKAGSVYRITEQGTPTLTDSPLDLAIQGKGYMPILLPSGETAYTRAGNFSTNDQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +V+ G + I IPQ + + G + K Sbjct: 127 QIVTEDGY-----LVQPGITIPQNATDITISKSGLVQVK 160 >gi|291334316|gb|ADD93977.1| flagellar basal body rod protein FlgG [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 257 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 41/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKIS--- 57 GL AQ + ++ +A+N++N +T GF+ + F + GA D D ++ Sbjct: 7 GLNAQ---QYKMQVIANNLANVNTTGFKRDRANFESLFYQIVKTAGAQTAD-DTALTSPL 62 Query: 58 FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 V +G + +S + G +ST LD A++G +F P G + TR G +G Sbjct: 63 AVGTGVKVVSTQKLFTQGGLVSTDNSLDLAIDGQGFFQALLPDGRVGYTRSGILSRNAEG 122 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIA----TMGLYSVDMS 166 L + SG + IQ+P NV G +++ G IA + + + Sbjct: 123 VLTTTSGY-----VLQPQIQLPADATSINVSTTGIVSVTEPGNDIAQEVGQISIANFSNP 177 Query: 167 QG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +G FV SG++ PL+ G V +G++E SN N + ++ MI + Sbjct: 178 RGLTPIGENFFVPSAESGVAQE--GAPLDGGFG-KVLQGYVESSNVNVVQQLVDMIETQR 234 Query: 219 KF 220 + Sbjct: 235 AY 236 >gi|167645396|ref|YP_001683059.1| flagellar basal body rod protein FlgG [Caulobacter sp. K31] gi|167347826|gb|ABZ70561.1| flagellar basal-body rod protein FlgG [Caulobacter sp. K31] Length = 262 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 19/138 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G+AAQ + + +++N++N +TVGF+ + +F +++ G + Sbjct: 10 GMAAQ---QLNVEVISNNIANMNTVGFKRGRAEFQDLLYQTIERAGAQSSGDGNVVPTGV 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 Q V +G Y E G+ T E D A++G + + P G TR G F D G Sbjct: 67 QVGGGVKTGSVYRIHEQGTPTMTNNEFDVAIQGKGFLQILLPSGETAYTRAGNFSTNDQG 126 Query: 113 SLVSASGKYPVLDMASVP 130 +V+ G Y V ++P Sbjct: 127 QIVTEDG-YTVQPGITIP 143 >gi|295687864|ref|YP_003591557.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] gi|295429767|gb|ADG08939.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] Length = 425 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GL AQ + LS +++N++N+ T ++T V F +V K + A + +S Sbjct: 13 GLTAQ---SRALSAISENIANSSTTAYKTTDVYFQALVSGGKGSSTSTSAVTAKSSQAMS 69 Query: 68 KEVGSFISTGTELDFALEGDAWFALES-PRGI----ILTRDGRFKVTDDGSLVSASGKY 121 + G+ ST + A++ +F + S P G + TR+G F+ DG L++ G Y Sbjct: 70 VQ-GTVTSTSVATNVAIQDAGFFVVTSDPAGAASEDMYTRNGSFETNADGYLINTEGFY 127 >gi|299131785|ref|ZP_07024980.1| flagellar basal-body rod protein FlgG [Afipia sp. 1NLS2] gi|298591922|gb|EFI52122.1| flagellar basal-body rod protein FlgG [Afipia sp. 1NLS2] Length = 262 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 25/158 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKND--------I 52 G+AAQ E + +++N++N T G++ F ++ VGA +D I Sbjct: 10 GMAAQ---ELSVQVISNNIANLRTTGYKKQMASFQDLLYEHVQRVGAQASDQGTVLPVGI 66 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 D G L + G+ G +L+ A+ G+ +F ++ P TRDG F Sbjct: 67 DIGGGVKTVGTPRLMTQ-GTLSPVGGDLNVAVRGEGYFKIQLPDSTYAYTRDGSFTTDGQ 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G +V+A G ++ I IPQ + +G++S Sbjct: 126 GRIVNAQG-----NLVQPTISIPQNASQLTINAQGQVS 158 >gi|289612840|emb|CBI60006.1| unnamed protein product [Sordaria macrospora] Length = 135 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 10/104 (9%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 + RL A N++N T G++ ++ F++ V A S VA + + S Sbjct: 18 QARLDVAAHNIANVATPGYKR-RIGFADTVAAR--------SEVALATRIDAAQA-SLTE 67 Query: 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 TG LD A+ GD +F + + TR G+F+ DG+LV+ G Sbjct: 68 TGNVLDMAISGDGYFRVRDGERTLYTRQGQFRRDADGALVTPQG 111 >gi|322832564|ref|YP_004212591.1| flagellar hook-basal body protein [Rahnella sp. Y9602] gi|321167765|gb|ADW73464.1| flagellar hook-basal body protein [Rahnella sp. Y9602] Length = 414 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 16/141 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ TVGF+T F+++ + + K++ V Sbjct: 2 SFSQAVSGLSAASTNLDVIGNNIANSATVGFKTATASFADMFAGSQTGMGVKVAAVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 + G+ +T LD AL G+ +F L G + +R+G+F + + +LV+ Sbjct: 60 ---NFNDGTTTNTSRGLDVALSGNGFFRLTDTSGAVYYSRNGQFSLDANRNLVNMQGLSV 116 Query: 117 ----ASGKYPVLDMASVPIQI 133 A+G P + + P+ + Sbjct: 117 TGFPATGTPPTIAAGAQPVAL 137 >gi|254508422|ref|ZP_05120542.1| flagellar hook protein [Vibrio parahaemolyticus 16] gi|219548632|gb|EED25637.1| flagellar hook protein [Vibrio parahaemolyticus 16] Length = 438 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 17/147 (11%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKE 64 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 4 VALSGISAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTPGGGVQAQKV 63 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASGK 120 GS + T +D + G +FA+ +P LTR+G F + D +V+A+ + Sbjct: 64 AQQFHEGSSVYTNNPMDLRISGTGFFAVAKDRLTPTTNELTRNGAFHLNKDNYMVTANDE 123 Query: 121 Y-----------PVLDMASVPIQIPQK 136 Y VL PI IP++ Sbjct: 124 YLLGYQVNGDTGDVLSYEPSPINIPKE 150 >gi|149188066|ref|ZP_01866361.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148838054|gb|EDL54996.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 432 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 23/148 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + L+ A + L+T ++N++N +T GF+ + +F +V N + G Sbjct: 4 VSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDV---YSNSLFTNAKTTPGGGAQP 60 Query: 67 SK-----EVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSA 117 SK GS IST +D + G +FA+ P+ LTR+G F + D +V++ Sbjct: 61 SKIAQQFHEGSSISTNNPMDLRISGTGFFAVSKDRLVPQQNELTRNGAFHLNKDSYMVTS 120 Query: 118 SGKY-----------PVLDMASVPIQIP 134 + ++ V+ PI IP Sbjct: 121 NDEFLLGYEVNKDTNEVVSYEPRPINIP 148 >gi|82702453|ref|YP_412019.1| flagellar hook protein FlgE [Nitrosospira multiformis ATCC 25196] gi|82410518|gb|ABB74627.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 406 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A + L + +N++NT+TVGF+ + +F+++ N + A Sbjct: 2 SFQQGLSGLNAASKNLDVIGNNVANTNTVGFKQSQAQFADM---FANSLSGGGGTQAGIG 58 Query: 64 EYLSK-----EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 L+ GS + D A+ G ++ L I +R+G+F DG +V++S Sbjct: 59 VKLAGIAQQFSQGSITVSNNPFDIAISGAGFYRLSDQGTISYSRNGQFHPDKDGYIVNSS 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|218677554|ref|ZP_03525451.1| flagellar basal body rod protein FlgG [Rhizobium etli CIAT 894] Length = 205 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 30/179 (16%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G TG +LD AL G +F ++S G L TR G F D G LV+ G Y VL Sbjct: 27 GELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTVDG-YEVLP---- 81 Query: 130 PIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRRENSGISP-------- 179 I IP + GE+S K G AT L + ++ FV +G+ P Sbjct: 82 GITIPTGSTELTISRSGEVSAKLPGATSATT-LGQLTLAD-FVNE--AGLQPIGDNLFQE 137 Query: 180 ------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF---NSITTLIDE 229 + P E+ +K+G+LE SN + + E+ ++I + + + + T DE Sbjct: 138 TAASGDAVVGNPDEE-GFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADE 195 >gi|149184208|ref|ZP_01862526.1| Flagellar basal-body rod FlgF [Erythrobacter sp. SD-21] gi|148831528|gb|EDL49961.1| Flagellar basal-body rod FlgF [Erythrobacter sp. SD-21] Length = 246 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 90/234 (38%), Gaps = 32/234 (13%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 +A NM+N +T+GFR + V I+ ++ + + G I TG LD Sbjct: 22 IASNMANANTLGFRAELLDQRPVT--IEGQPNEARAMQIARVRGADMSSGQIIETGRNLD 79 Query: 82 FALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP------ 134 A+ A A+++ G TR G V+ G LV+ G+ PVL PI IP Sbjct: 80 VAVTTQALMAVQAEDGTEAYTRRGDLSVSSTGLLVNGEGR-PVLGETG-PITIPPVGIPA 137 Query: 135 -QKDEIFNVGEKGEISQKGKVIATMGLYSVDMS------QGFVRRENSGISPNIPPTPLE 187 D + + Q I + + S + S G R E GI P Sbjct: 138 ISPDGTITIADPTTPDQPPAKIGRIKMASWEGSPISKTLDGLFRVEGGGILPTD------ 191 Query: 188 DLSGVTVKRGFLEDSNANS------MYEMGQMIHLTQKFNSITTLIDENEKSML 235 ++K G LE SN + M E ++ + K S IDE+ +L Sbjct: 192 --ETASLKTGALEQSNVKTTEVLVEMIEAQRLFAMRTKIVSTAKEIDESGSQLL 243 >gi|327393471|dbj|BAK10893.1| flagellar hook protein FlgE [Pantoea ananatis AJ13355] Length = 415 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 16/141 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS------ 116 + GS +T LD AL G+ +F L + G + +R+G+F + + +LV+ Sbjct: 60 ---NFNDGSTTTTSRGLDVALSGNGFFRLTNSAGAVSYSRNGQFTLDQNRNLVNTQGLNV 116 Query: 117 ----ASGKYPVLDMASVPIQI 133 ASG P + + P+ I Sbjct: 117 TGYPASGVPPTIQTGANPVAI 137 >gi|302387773|ref|YP_003823595.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] gi|302198401|gb|ADL05972.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] Length = 267 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 18/141 (12%) Query: 9 LAAQLALEQR-LSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQK--------I 56 LA+ + + R L+ +++NM N T G+++ K+ F E + +N K + Sbjct: 8 LASGMLYQNRNLNVISNNMVNVSTPGYKSDKLVSTTFKEEM-LYRNGNRNKSNPVEIGTV 66 Query: 57 SFVASGKEY-LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 S + + + S + G+ TG LDFAL +F +E G + TR+G F++ D+G L Sbjct: 67 SMIRAARNTNTSYDQGTLEETGGNLDFALTKPGFFTIEDTNGNRLYTRNGSFRLDDEGYL 126 Query: 115 -VSASGKYPVLDMASVPIQIP 134 +S+ G+ VL PI++P Sbjct: 127 CLSSMGR--VLGEDGNPIELP 145 >gi|119385423|ref|YP_916479.1| hypothetical protein Pden_2696 [Paracoccus denitrificans PD1222] gi|119375190|gb|ABL70783.1| protein of unknown function DUF1078 domain protein [Paracoccus denitrificans PD1222] Length = 446 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 15/147 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFV 59 + ++ + G++ A RL+T++DN++N+ T G++ + F S V+ + + V Sbjct: 3 ISSALSAGVSGLAANSTRLATISDNIANSGTYGYKRVDTSFESMVINQGRGGGLYTANGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL----------ESPRGIILTRDGRFKVT 109 + + E G+ + T LD A+ G + + +++TR G F+ Sbjct: 63 RAATSRIVDERGNLVPTSHPLDIAISGRGMLPVIYSASLDSGTATSSDLVMTRTGSFRTD 122 Query: 110 DDGSLVSASG----KYPVLDMASVPIQ 132 D G L + SG +P ++P Q Sbjct: 123 DQGYLRTDSGLVLMGWPANSDGTIPSQ 149 >gi|167576664|ref|ZP_02369538.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis TXDOH] Length = 258 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 54/270 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISF----- 58 GL AQ + +L VA+N++N +TVGF+ +V F ++ ++ +DQ + Sbjct: 7 GLQAQ---DAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPSGIQ 63 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + + GS +TG LD A+ G + + G TR G+ + +G Sbjct: 64 MGSGTRIVGTQKVFTDGSVQTTGRSLDVAVTGKGFLQVLMANGETGYTRAGQLSINAEGL 123 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 LV+A G +P+Q IP+ +GE G ++ ATM S G Sbjct: 124 LVNAQG---------LPLQPEISIPENATDIAIGENGIVA------ATMPGASSPSEVGQ 168 Query: 170 VRREN-------SGISPNI--------PPTPLEDLSGV--TVKRGFLEDSNANSMYEMGQ 212 ++ N + N+ PP E + V +K+G LE SN + EM Sbjct: 169 LQLANFVNPAGLLALGDNLYMETVASGPPNEGEAGTDVFGKIKQGALEGSNVQVVEEMVD 228 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 MI Q+ + T + +ML+ + A Sbjct: 229 MIA-AQRTYEMNTKVLSAADNMLQHLSQAA 257 >gi|315179627|gb|ADT86541.1| flagellar basal-body rod protein FlgF [Vibrio furnissii NCTC 11218] Length = 243 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 11/203 (5%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 ++N+SN DT GFR + V ++ + V + + G + TG LD Sbjct: 23 SNNLSNADTAGFRADMERVRSV--PLQGSGFDGRTMVVTNSAATRFDSGDVVKTGRPLDV 80 Query: 83 ALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ GD + +++P G TR G V +G+L S +G + + ++ + QK E Sbjct: 81 AVMGDGYLTVQTPEGGEAYTRAGNIAVDVNGAL-SINGFAVMGENGALVLPDFQKVE--- 136 Query: 142 VGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 V E+G IS G I L V + +++E+ + + PL + V + Sbjct: 137 VSERGRISVIPPGGGAEIEVGTLKLVKANDNPLQKESDSLLHTVDGVPLAADNSVQLAPE 196 Query: 198 FLEDSNANSMYEMGQMIHLTQKF 220 +E SN +++ E+ ++ LT+ F Sbjct: 197 HIEGSNVSAIDELLNVMSLTRNF 219 >gi|229195985|ref|ZP_04322737.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1293] gi|228587367|gb|EEK45433.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1293] Length = 257 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 29/230 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTINS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--KVIATMGLYSVDMSQG 168 D L ++SG Y V+ + I+IP+ ++ V G + +G IA + +VD Sbjct: 123 DRYLQTSSGAY-VMGENNERIRIPEGAKVA-VQADGTLYDEGTQNNIARLQTKTVDAEAN 180 Query: 169 --FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 ++REN + + + DL T VK LE+SN + EM ++ Sbjct: 181 SRLMQRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|153951334|ref|YP_001397315.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938780|gb|ABS43521.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97] Length = 545 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 11/147 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M SF G++ + + A+N++N +T GF+ +F ++ N I + + A Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI---FYNTITTQSTNPA 57 Query: 61 SG-------KEYLSKEVGSFISTGTELDFALEGDAWFA-LESPRGIILTRDGRFKVTDDG 112 G + E GS I++ E D AL+G +F LE+ TR+G FK +G Sbjct: 58 QGGYGSGAASSQVVFEQGSPIASDGEFDVALQGKGFFGVLEADGNAYYTRNGSFKRDANG 117 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEI 139 LV + G + + M V + D + Sbjct: 118 YLVDSYGNFVLGTMNPVFTGMNYSDRV 144 >gi|51597636|ref|YP_071827.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis IP 32953] gi|186896770|ref|YP_001873882.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis PB1/+] gi|51590918|emb|CAH22574.1| putative flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis IP 32953] gi|186699796|gb|ACC90425.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis PB1/+] Length = 243 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 35/215 (16%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG------SFI 74 A+N++N++T GFR K ++V+G N S VA LS+ G S Sbjct: 23 ANNLANSNTQGFRADLEKATATQVMGGGYN------SRVA----VLSQNAGVDMTPASLQ 72 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG +LD AL+ A+ S + TR+G+ V+ +G+L + +G PVL PI +P Sbjct: 73 ETGRDLDIALKNQGLIAVLSGGREVYTRNGQMDVSAEGAL-TING-LPVLGDGG-PIVLP 129 Query: 135 QKDEIFNVGEKGEIS---QKGKV-----IATMGLYSVDMSQGFVRRENSG-ISPNIPPTP 185 ++ + G I+ Q G + I + L VD+ +R+ N G + N P Sbjct: 130 PYSA-LSIADDGTIAIIPQAGGIKTPEEIERIKL--VDIPANQLRKNNRGLLVSNRGPAA 186 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ V V LE SN +++ EM I L+++F Sbjct: 187 RDET--VQVVNKHLESSNVSAISEMIASISLSRQF 219 >gi|90422390|ref|YP_530760.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisB18] gi|90104404|gb|ABD86441.1| flagellar basal body FlaE [Rhodopseudomonas palustris BisB18] Length = 419 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++A A ++ ++DN++N+ TVG++T F +V + + V + Sbjct: 11 ISALSAQSSAMAMISDNIANSQTVGYKTTSASFQALVTSSSSATTYSSGGVTTLSRSNIS 70 Query: 69 EVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASGKY 121 E G +T + D + G+ +F + + + TR G F + D G LVS+ G Y Sbjct: 71 EQGLLTTTTSATDIGISGNGFFPVTTALTGGSTLYTRSGSFTIDDSGYLVSSGGAY 126 >gi|323175233|gb|EFZ60846.1| flagellar basal-body rod protein flgG domain protein [Escherichia coli LT-68] Length = 202 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 15/161 (9%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--KYPVLDMA 127 G+ T D A++G +F + P G TRDG F+V +G LV+A G P + + Sbjct: 26 GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIP 85 Query: 128 SVPIQIP-QKDEIFNVGEKGEIS--QKGKVIAT-----MGLYSVDMSQGFVRRENSGISP 179 + + I +D + +V ++G+ + Q G++ T GL S+ + + ++SG +P Sbjct: 86 ANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENL-YTETQSSG-AP 143 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 N TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 144 N-ESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAY 182 >gi|42526518|ref|NP_971616.1| flagellar basal body rod protein FlgG [Treponema denticola ATCC 35405] gi|41816711|gb|AAS11497.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] gi|325473456|gb|EGC76651.1| flagellar basal-body rod protein FlgG [Treponema denticola F0402] Length = 264 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 38/235 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISFVASGKEYLSK- 68 + TVA+N++N +T GF+ + +F +++ A ++ I + G + Sbjct: 19 IDTVANNLANVNTSGFKKQRAEFEDLIYQTVKTAGTPATEDTITPVGVQMGHGARLAATQ 78 Query: 69 ---EVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 E GS +TG D A++G+ +F L+ TRDG FK+ D LV+++G Sbjct: 79 RIFEQGSLQNTGVTSDIAIQGEGFFRVLQYDGTYAYTRDGSFKIDADRQLVTSNG----- 133 Query: 125 DMASVP-IQIPQ--KDEIFNVGEKGEISQK-GKV-----IATMGLYSVDMSQGF------ 169 + +P I P+ ++ V G ++ K G + + + LY + G Sbjct: 134 -LRVLPEIIFPEGYRENTIAVSRDGRVTVKVGDIDDPIEVGQIELYRFQNNAGLSAEGSN 192 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI--HLTQKFNS 222 + R+ IP P G T + FLE SN +++ EM MI +FNS Sbjct: 193 LFRQTPASGTAIPGRPGFTGFGRTEHK-FLEMSNVSTVSEMVNMIVAQRAYEFNS 246 >gi|323699248|ref|ZP_08111160.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323459180|gb|EGB15045.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 541 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 18/133 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 S +G +A Q +S +A+N++N +T+G++ + F +++ GA+ ++ D +I Sbjct: 5 SMYVGATGVIAHSQGMSVLANNLANVNTIGYKRSDILFGDLISQQVATGGALYDNGDVRI 64 Query: 57 SFVASGKEYLSKEVGSF----ISTGTE-LDFALEGDAWFALESPRGII-----LTRDGRF 106 + + G +S G F +S TE D A+ G +F + P G I TR G F Sbjct: 65 NQMGMGVA-VSAIRGIFTEGALSETTEATDLAISGQGFFGVNDPSGTIRGASHYTRAGDF 123 Query: 107 KVTDDGSLVSASG 119 + ++ LV++ G Sbjct: 124 RFDNEAYLVNSEG 136 >gi|218507129|ref|ZP_03505007.1| flagellar basal body rod protein FlgG [Rhizobium etli Brasil 5] Length = 217 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 22/176 (12%) Query: 70 VGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPVLDMAS 128 +G TG +LD AL G +F ++S G L TR G F D G LV+ G Y VL Sbjct: 38 LGRLTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTVDG-YEVLP--- 93 Query: 129 VPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGF------VRRENSG 176 I IP + GE+S K V+ + L G + +E + Sbjct: 94 -GITIPTGSTELTISRSGEVSVKLPGATDTTVLGQLTLADFVNEAGLQPIGDNLFQETAA 152 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF---NSITTLIDE 229 + P E+ +K+G+LE SN + + E+ ++I + + + + T DE Sbjct: 153 SGEAVVGNPDEE-GFAYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADE 207 >gi|170744543|ref|YP_001773198.1| flagellar hook protein FlgE [Methylobacterium sp. 4-46] gi|168198817|gb|ACA20764.1| protein of unknown function DUF1078 domain protein [Methylobacterium sp. 4-46] Length = 407 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ A R+STVA+N+ N T G++ + +FS ++ + D V + + Sbjct: 6 ALRTGMSGMNAQSNRISTVAENVQNAGTTGYKRVSTEFSSLLLSSSATGDYNSGSVETVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + G+ +ST ++ D A+ G+ +F ++ G LTR G F Sbjct: 66 RRAVSDEGARVSTSSKSDLAIAGNGFFVVKDASGASYLTRAGNF 109 >gi|307823531|ref|ZP_07653760.1| fagellar hook-basal body protein [Methylobacter tundripaludum SV96] gi|307735516|gb|EFO06364.1| fagellar hook-basal body protein [Methylobacter tundripaludum SV96] Length = 597 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 24/139 (17%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISF 58 SF L+ A L +N++N+ TVGF+ + +F++V G K + Sbjct: 2 SFATALSGLQAASTNLQVTGNNIANSQTVGFKESRAEFADVYASSIGGVSKTQPGSGVKV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALE---------SPRGII-------LTR 102 +++ + G+ T LD AL G+ +F L +P + TR Sbjct: 62 TEVAQQF---KDGTIDPTSNSLDLALSGNGFFVLADTVNLPDPANPTAPVDPSVPTSYTR 118 Query: 103 DGRFKVTDDGSLVSASGKY 121 +G FK+ G++V++ GKY Sbjct: 119 NGAFKLDSSGNVVNSQGKY 137 >gi|147678401|ref|YP_001212616.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] gi|146274498|dbj|BAF60247.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] Length = 256 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 110/256 (42%), Gaps = 35/256 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-QKISFVASGKEYL 66 GL AQ R+ +A +++N G++ + +F+E+V +I+ Q I A G+ Sbjct: 11 GLNAQ---RTRVDAIAVDLANIAAAGYKRNRTRFAELV---SQEIEKQGIPVAAEGRPAR 64 Query: 67 SKE------------VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + G + T D +EG+ +F + P G + TR+G F +G+ Sbjct: 65 AGSGVRAESADKVLLAGETVKTERPFDLLIEGEGYFRVVLPGGEEVYTRNGCFTYDKEGN 124 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEISQKGKV----IATMGLYSVDM 165 L +SG L+ S+P I D + + G + G++ ++M Sbjct: 125 LYCSSGYR--LEGVSLPEGWDKVIVSPDGRVSAEKDGSVIDAGQITLYRFSSMAALKPAG 182 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI--HLTQKFNSI 223 S F E +G + IP TP + GV +++G+LE SN + E+ +I FN+ Sbjct: 183 SFHFYLDEEAGEA--IPGTPGSEGFGV-IRQGYLETSNVDLTGEITGLIEAQTVYGFNAR 239 Query: 224 TTLIDENEKSMLEAIR 239 + I + M +R Sbjct: 240 SVRIVDEMWGMANNLR 255 >gi|218886713|ref|YP_002436034.1| hypothetical protein DvMF_1618 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757667|gb|ACL08566.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 525 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 8/160 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKIS 57 + +S ++ L+ + +S + +N++N+ T G++++ + F +V + IDQ + Sbjct: 3 LSSSMYASVSGLLSTAESISVIGNNLANSSTTGYKSMSMLFEDVFYSSITTSGGIDQIGN 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSL 114 A GS+ T ++ A+ G+ +F +E P+ I TR G F +G L Sbjct: 63 GSAISAISTDFSQGSYQDTSEAMNMAIAGEGYFIVEDPQNDGQIYYTRAGDFTFNTEGYL 122 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 V++SG Y V A P D G G++ K + Sbjct: 123 VNSSG-YQVQGWAVDPDTASSTDPS-TTGALGDVQLKSRT 160 >gi|146307869|ref|YP_001188334.1| flagellar hook protein FlgE [Pseudomonas mendocina ymp] gi|145576070|gb|ABP85602.1| flagellar basal body FlaE domain protein [Pseudomonas mendocina ymp] Length = 438 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNIGL+ A + L+ +N++N T GF+ + +F++V A + + + S V Sbjct: 2 SFNIGLSGLRAATKDLNVTGNNIANAGTAGFKQSRAEFADVYAASVLGTGSNPQGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G G+ T LD A+ G+ +F + I TR G F +G +V+ G Sbjct: 62 GDISQLFNQGNINYTQNALDLAINGNGFFVTSNNGEISYTRAGYFGTDREGFMVNNFG 119 >gi|27464952|gb|AAN63049.1| flagellar component FlgE [Vibrio vulnificus] Length = 434 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 17/145 (11%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKE 64 + L+ A + L+T ++N++N +T GF+ + +F +V + N V + + Sbjct: 4 VSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLVTNAKTTPGGGVQANQV 63 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGII----LTRDGRFKVTDDGSLVSASGK 120 GS I T +D + G +FA+ R + LTR+G F ++ D +V+A+ + Sbjct: 64 AQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRMVPNQNELTRNGAFHLSKDNYMVTANDE 123 Query: 121 Y-------PVL-DMASV---PIQIP 134 Y P+ D+AS P+ IP Sbjct: 124 YLLGYQVDPLSGDVASYEPQPLNIP 148 >gi|149908758|ref|ZP_01897419.1| Hypothetical FlgF flagellar basal-body rod protein [Moritella sp. PE36] gi|149808300|gb|EDM68239.1| Hypothetical FlgF flagellar basal-body rod protein [Moritella sp. PE36] Length = 240 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 46/220 (20%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK----EYLSKEV-------- 70 A+N++N +T GF K DID+ +++ G YLS+ Sbjct: 22 ANNLANVNTNGF--------------KADIDRAVAYKIEGAGYETRYLSQSAASGTNFSA 67 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G TG LD A++G+ + A+ +P G TR G + +G S +G V + A Sbjct: 68 GKLEKTGRSLDIAIQGEGYIAVRTPGGAEAYTRAGSMTLDSEGR-ASINGNAVVANGA-- 124 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIA-TMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 + P+ I EI G V A T+G V + Q + + +G L Sbjct: 125 QLTFPEYQSI-------EIGSDGTVTAITLGGAQVQVGQIKLIKPEAGSMVKGQDGLLHL 177 Query: 189 LSGVTVKR--------GFLEDSNANSMYEMGQMIHLTQKF 220 +G R GFLE SN N++ E+ + + ++F Sbjct: 178 KAGAVGNRAEDVALVSGFLEGSNVNAVTELVSSMMVNRQF 217 >gi|309388826|gb|ADO76706.1| flagellar hook-basal body protein [Halanaerobium praevalens DSM 2228] Length = 548 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 12/130 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDID-- 53 M S G++ + +Q + +N+SN +TVGF++ +V F E++ GA + Sbjct: 1 MLRSMYAGVSGLNSHQQMMDVTGNNISNVNTVGFKSSRVTFKEMLSQTIRGASAPQENRA 60 Query: 54 ----QKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 Q++ V G G+ STG D A++GD +F L + +R G F Sbjct: 61 GTNPQQVGLGVGVGSIDSDMSSGNLQSTGKTSDVAIQGDGFFVLRDGSTEVYSRAGNFNF 120 Query: 109 TDDGSLVSAS 118 + G L S+S Sbjct: 121 DEQGRLYSSS 130 >gi|78067837|ref|YP_370606.1| flagellar hook protein FlgE [Burkholderia sp. 383] gi|77968582|gb|ABB09962.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 413 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 14/140 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYL 66 GL+ L + +N++N +TVGF++ +F+++ ++ + +I + + + Sbjct: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSTNTQIG-IGTSLNAV 64 Query: 67 SKEVG--SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK---- 120 + G + +T + LD A+ G+ +F + + +RDG F+ +G +V + G+ Sbjct: 65 QQNFGQGTINTTSSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRNLMG 124 Query: 121 YP-----VLDMA-SVPIQIP 134 Y V++ A +VP+Q P Sbjct: 125 YAANAGGVINTAQTVPLQAP 144 >gi|323490137|ref|ZP_08095357.1| flagellar hook-basal body protein [Planococcus donghaensis MPA1U2] gi|323396185|gb|EGA89011.1| flagellar hook-basal body protein [Planococcus donghaensis MPA1U2] Length = 280 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 40/247 (16%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSE-VVGAIKNDIDQKISF---------VASG-- 62 L+++L + +N++N +T G++ + FS+ +V +++ + QK + +G Sbjct: 15 LQKKLDLIGNNIANVNTNGYKRQEASFSDALVLSLEKQVGQKNEVGRITPNGLRIGAGAI 74 Query: 63 --KEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKV-----TDDGSL 114 + + + GS TG LDF ++G+ A+F + S + T+DG F+V + L Sbjct: 75 LSQTAVRNDQGSIKETGRPLDFMVQGESAYFRIASDGETLYTKDGSFQVQPILNSTQVGL 134 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQG 168 V+A+G VL + PI E + +G + S K MG+ ++ Sbjct: 135 VTANGD-AVLGADNQPIVFDADFENIRLNGQGTLEISYKDSDKQPTEIQMGVAQINRQDS 193 Query: 169 FVR------RENSGISPNIPPTPLE--DLS-----GVTVKRGFLEDSNANSMYEMGQMIH 215 + R N + + L+ DLS + +K+ FLE SN + EM ++I Sbjct: 194 LAKIGENRFRLNGTEAEQLANGNLQFIDLSQPNDGAIQIKQNFLEMSNVDLSDEMTELIT 253 Query: 216 LTQKFNS 222 + F S Sbjct: 254 TQRLFQS 260 >gi|291617020|ref|YP_003519762.1| FlgE [Pantoea ananatis LMG 20103] gi|291152050|gb|ADD76634.1| FlgE [Pantoea ananatis LMG 20103] Length = 415 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 16/141 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAVIQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS------ 116 + GS +T LD AL G+ +F L + G + +R+G+F + + +LV+ Sbjct: 60 ---NFNDGSTTTTSRGLDVALSGNGFFRLTNSAGAVSYSRNGQFTLDQNRNLVNTQGLNV 116 Query: 117 ----ASGKYPVLDMASVPIQI 133 ASG P + + P+ I Sbjct: 117 TGYPASGVPPTIQSGANPVAI 137 >gi|206975016|ref|ZP_03235931.1| putative flagellar basal-body rod protein [Bacillus cereus H3081.97] gi|217959255|ref|YP_002337803.1| flagellar basal body rod protein FlgG [Bacillus cereus AH187] gi|229138473|ref|ZP_04267062.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST26] gi|206747035|gb|EDZ58427.1| putative flagellar basal-body rod protein [Bacillus cereus H3081.97] gi|217066007|gb|ACJ80257.1| putative flagellar basal-body rod protein [Bacillus cereus AH187] gi|228645010|gb|EEL01253.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST26] Length = 257 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 29/230 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTINS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--KVIATMGLYSVDMSQG 168 D L ++SG Y V+ + I+IP+ ++ V G + +G IA + +VD Sbjct: 123 DRYLQTSSGAY-VMGENNERIRIPEGAKVA-VQPDGTLYDEGTQNNIARLQTKTVDAEAN 180 Query: 169 --FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 ++REN + + + DL T VK LE+SN + EM ++ Sbjct: 181 SRLMQRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|291286229|ref|YP_003503045.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290883389|gb|ADD67089.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 829 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 16/121 (13%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIK--------NDIDQKISFVASG 62 +Q + + +N+SN +TVG+++ + F + +VG+ N + +G Sbjct: 16 QQAMDVLGNNISNVNTVGYKSGRAVFEDMLSQTLVGSTAPSDTLGGTNSTQVGLGTSLAG 75 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSASGK 120 + + E GS ST D A++GD +F ++ ++ TR G F+ GSLV++SG Sbjct: 76 VDTI-FETGSMQSTSVNTDLAIQGDGFFVIKGAGSSDLLYTRAGDFRFDTSGSLVTSSGF 134 Query: 121 Y 121 Y Sbjct: 135 Y 135 >gi|295097203|emb|CBK86293.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 404 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 20/148 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ GL+ A + L V +N++N+ T GF+ V F+++ A + +++ V Sbjct: 2 SFSQGLSGLNAAAKALDVVGNNIANSQTAGFKAGSVAFADIF-AGTTGLGVQVAGVTQ-- 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 + G + + LD L+G +F + S G + R+G+FK +G++++ Sbjct: 59 ---NFGDGGLTAGNSSLDMGLQGKGFFRMVSEGGAVYYGRNGQFKQDQNGNIINSTNGLY 115 Query: 117 -----ASGKYPVLDMASV--PIQIPQKD 137 A+G P + + PI+IP +D Sbjct: 116 LTGYQATGTPPTIAPGAPVGPIRIPTED 143 >gi|296102908|ref|YP_003613054.1| flagellar hook protein FlgE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057367|gb|ADF62105.1| flagellar hook protein FlgE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 402 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPVLDMAS 128 +TG LD A+ + +F + G + +R+G+FK+ ++ +LV+ G YPV S Sbjct: 67 TNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPVAGTPS 126 Query: 129 V--------PIQIP 134 PI IP Sbjct: 127 TVQTGANPQPINIP 140 >gi|42522134|ref|NP_967514.1| flagellar basal-body rod protein FlgG [Bdellovibrio bacteriovorus HD100] gi|39574665|emb|CAE78507.1| flagellar basal-body rod protein FlgG [Bdellovibrio bacteriovorus HD100] Length = 261 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 41/271 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S N A + + +A+N++N T GF+ + +F +++ QK A Sbjct: 1 MLKSLNTAATGMAAQQTNMDVIANNIANVSTAGFKRSRAEFEDLMYQT-----QKEPGTA 55 Query: 61 SGKEYLSK---EVGSFIST-GTELDFA--------------LEGDAWFALESPRG-IILT 101 SG S +VG + T G + DFA +EG +F + + G T Sbjct: 56 SGLNAYSPNGVQVGLGVRTAGVQKDFAGGQAQITKNPLDLQIEGSGFFQVLTADGETAYT 115 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLY 161 RDG FK +G LV +G ++ +VP + E+ GE I+ V T+G Sbjct: 116 RDGAFKKDPNGRLVDKNGNTLQPEI-TVPANV-SGIEVAPTGEVRVITGLNDVPQTIGQI 173 Query: 162 SV----------DMSQG-FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 V M + F + +SG + I P + +G + +G LE SN N + EM Sbjct: 174 DVVNFVNPAGLKAMGKNLFTQTPSSGQA--IASRPGLNGTGY-LAQGQLESSNVNIVDEM 230 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + ++ +++ ML+AI N+ Sbjct: 231 VNMITAQRAMETNSKVMQASDQ-MLQAINNL 260 >gi|331269339|ref|YP_004395831.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] gi|329125889|gb|AEB75834.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] Length = 262 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 21/132 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ----------KIS 57 G+AA++ +L +++NM+N+ TVG++ + VKF+++ ++ ++D+ K Sbjct: 11 GMAAEM---DKLDAISNNMANSTTVGYKRVDVKFNDL---MQENLDRLGYPVSKGQGKRQ 64 Query: 58 FVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 SG + E G+ + T D A++G +F + G TR G F + G Sbjct: 65 VTGSGVKSTELERDNAQGNLLQTNNNTDLAIDGKGYFKVVDGTGRTFYTRGGSFNIDPSG 124 Query: 113 SLVSASGKYPVL 124 ++V +G V+ Sbjct: 125 TVVDKNGNKLVI 136 >gi|220934394|ref|YP_002513293.1| flagellar basal body FlaE domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995704|gb|ACL72306.1| flagellar basal body FlaE domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 408 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F L+ A L +N++N+ T GF+ + +F++V I Q Sbjct: 3 FRTALSGLNAASADLRVTGNNIANSGTTGFKQSRAEFADVFALSYGGISQTAIGTGVRLS 62 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 ++++ G+ TG LD A+ G +F L + +R G F+V +G +V+ G+ Sbjct: 63 AVTQQFSQGNIEFTGNNLDLAMNGQGFFVLNDSGTQVYSRAGAFQVNREGYVVNTQGQ-- 120 Query: 123 VLDMASVPIQIPQKDE--IFNVGEKGEI 148 + + PQ E FN G ++ Sbjct: 121 -----RLQVYTPQNAEGTQFNTGSLADL 143 >gi|148980301|ref|ZP_01815988.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] gi|145961320|gb|EDK26630.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] Length = 244 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 99/217 (45%), Gaps = 37/217 (17%) Query: 23 ADNMSNTDTVGFRTI-------KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 A+N+S+ DTVGF+ + +++ S + ++ + + I+ A G++ I Sbjct: 23 ANNLSHADTVGFKALMEHSTPMRLEGSGFLTSVTSRTNSSINNFAQGED---------IR 73 Query: 76 TGTELDFALEGDAWFALESPR---GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 T LD A+ GD + LE + TR G F++ +G L + D P+ Sbjct: 74 TERPLDVAINGDGFITLEGVEDEPAELYTRAGNFRLDGNGQLYLGERRVMSTDG---PMV 130 Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-SQGFVRRENSGIS--------PNIPP 183 +P E +V G +S + G S+++ + V+ EN ++ P Sbjct: 131 LPDF-EFVSVSSNGLVS----ITPIGGEASLEVGALKLVKPENEQMTMHASGHFVPKDGQ 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ED S V V+ G+LE SN +S+ E+ ++ LT+++ Sbjct: 186 VLAEDFS-VQVRSGYLEASNVSSLEELVSIMSLTRQY 221 >gi|227873524|ref|ZP_03991769.1| flagellar basal-body rod protein [Oribacterium sinus F0268] gi|227840614|gb|EEJ50999.1| flagellar basal-body rod protein [Oribacterium sinus F0268] Length = 256 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 25/253 (9%) Query: 9 LAAQLALEQR-LSTVADNMSNTDTVGFR-------TIKVKFSEVVGAIKN----DIDQKI 56 LA+ + ++R L+ +++NM N T G++ T K + G D+ Sbjct: 8 LASGMITQRRNLNNISNNMVNIQTSGYKKDTMVSSTFKEEMMIRTGKYNKKGPEDLAVAS 67 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL-V 115 ++ K Y E GS+ T D A+ G +FA+ +P+G TR G F V ++G L + Sbjct: 68 RIKSASKTYTDYEQGSYELTDGIYDTAISGKGFFAVSTPQGTRYTRGGAFSVNENGVLEL 127 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS----VDMS--QGF 169 + GK V I +P + F + G I T +Y VD + Sbjct: 128 AGVGK--VQSEEGHDIVLPNDN--FAIDPDGSIFDPNSTGNTRTVYGTLKVVDFADYNAL 183 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + +N+ S N T L+ + ++ LE SN N + EM M+ + S ++ Sbjct: 184 HKEDNNLFSTN--QTELKKPADSSINWKMLEKSNVNMVDEMTTMMSSQRALQSAAQMLRM 241 Query: 230 NEKSMLEAIRNIA 242 + M +A ++ Sbjct: 242 YDTVMAKASSDVG 254 >gi|291617022|ref|YP_003519764.1| FlgG [Pantoea ananatis LMG 20103] gi|291152052|gb|ADD76636.1| FlgG [Pantoea ananatis LMG 20103] gi|327393473|dbj|BAK10895.1| flagellar basal-body rod protein FlgG [Pantoea ananatis AJ13355] Length = 260 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 18/137 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + + +A+N++N T GF+ + F +++ + S Sbjct: 11 GLDAQ---QMNMDVIANNLANVSTNGFKRSRAVFEDLMYQTMRQPGTQSSEQTTLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G ++ E G+ T D A+ G +F ++ P G TRDG F+V +G Sbjct: 68 IGTGVRPVTTERLHTQGNLSQTNNSKDIAINGQGFFQIQMPDGTSAYTRDGSFQVDQNGQ 127 Query: 114 LVSASGKYPVLDMASVP 130 LV+ SG +PV ++P Sbjct: 128 LVTNSG-FPVQPGITIP 143 >gi|225181603|ref|ZP_03735044.1| protein of unknown function DUF1078 domain protein [Dethiobacter alkaliphilus AHT 1] gi|225167711|gb|EEG76521.1| protein of unknown function DUF1078 domain protein [Dethiobacter alkaliphilus AHT 1] Length = 408 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 12/136 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQ 54 MQ S G++ + ++ + +N++N +T F+ +V+F +++ + D Sbjct: 1 MQRSLFTGVSGLRNHQTKMDVIGNNIANVNTTAFKAGRVRFQDILSQNIRGASAPQDGRG 60 Query: 55 KI--SFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 I + V G S + GS STG D A++G +F + +RDG F + Sbjct: 61 GINPAQVGLGMSVASIDTIHTPGSLQSTGRPTDLAIQGSGFFVMSDGANEFYSRDGAFSL 120 Query: 109 TDDGSLVSASGKYPVL 124 DG LV+ + + L Sbjct: 121 GSDGDLVNGANGFKPL 136 >gi|295688784|ref|YP_003592477.1| flagellar basal-body rod protein FlgG [Caulobacter segnis ATCC 21756] gi|295430687|gb|ADG09859.1| flagellar basal-body rod protein FlgG [Caulobacter segnis ATCC 21756] Length = 262 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 19/138 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G++AQ + + +++N++N +TVGF+ + +F +++ G I Sbjct: 10 GMSAQ---QLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIVPTGV 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 Q V +G Y E G+ T LD A++G + + P G TR G F D G Sbjct: 67 QVGGGVKAGSVYRITEQGTPTLTDNPLDLAIQGKGYLQILLPSGETAYTRAGNFSTNDQG 126 Query: 113 SLVSASGKYPVLDMASVP 130 +V+ G Y V +VP Sbjct: 127 QIVTEDG-YTVQPGITVP 143 >gi|68164546|gb|AAY87275.1| predicted flagellar hook protein [uncultured bacterium BAC17H8] Length = 1387 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 28/154 (18%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 SF L +S ++N++N T GF+ +V+F ++ + + S + SG Sbjct: 2 SFYTALTGLNGSSADISATSNNIANVGTTGFKRSRVEFGDIFAT--SPLQNASSSIGSGT 59 Query: 63 -----KEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSL 114 K+ ++ G+ ++ LD A+ G +FAL+ + + TR+G V +D + Sbjct: 60 ILKGIKQQFTQ--GNIAASLNALDLAISGQGFFALKPSLTSAQTVYTRNGSLNVNNDRYV 117 Query: 115 VSASGK----YPV----------LDMASVPIQIP 134 V ++G+ YPV LD A VP+Q+P Sbjct: 118 VDSAGQFLLTYPVNTDGSVTAKDLDSA-VPLQLP 150 >gi|325288803|ref|YP_004264984.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964204|gb|ADY54983.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 299 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 21/124 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSKEVGSF 73 + + +N++N +TVG++ + FS ++ GA D ++ G + + +GS Sbjct: 19 MDVIGNNIANVNTVGYKYSRTGFSTMLSQSMRGASAPDTADPSTY--GGTDGIQIGLGSA 76 Query: 74 I-------------STGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 I STG D L+G+ +F L+ G + L+R+G FK G+LV AS Sbjct: 77 IGSIDQIMTQGGSQSTGKNTDLMLQGEGFFMLQDSNGNVYLSRNGNFKTDGAGNLVDAST 136 Query: 120 KYPV 123 + V Sbjct: 137 GFIV 140 >gi|220922287|ref|YP_002497589.1| flagellar basal body FlaE domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946894|gb|ACL57286.1| flagellar basal body FlaE domain protein [Methylobacterium nodulans ORS 2060] Length = 456 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L ++ N++N T G+R I F +++ A + Q VA+ + + G+ STG Sbjct: 21 LDNISGNIANAQTTGYRRIDTTFVDLL-AEQPVKSQTSGSVAAYSQLTNTLQGNLTSTGI 79 Query: 79 ELDFALEGDAWFALESP-------RGI----ILTRDGRFKVTDDGSLVSASGKYPV 123 + AL GD +F + P R + TR G F V DG LV+ +G Y V Sbjct: 80 GTNMALNGDGFFVVRIPGTDTAGQRSFSSENLYTRRGDFTVDKDGFLVNGAGSYLV 135 >gi|294675564|ref|YP_003576179.1| flagellar hook protein FlgE [Rhodobacter capsulatus SB 1003] gi|294474384|gb|ADE83772.1| flagellar hook protein FlgE [Rhodobacter capsulatus SB 1003] Length = 452 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 14/146 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFV 59 + +S N G+A A RL+T++DN++N+ T G++ F S V+ ++ V Sbjct: 3 ISSSLNAGVAGLAANATRLATISDNIANSGTYGYKRATADFESMVLTQARSSGTYSAGGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWF------ALESPRG---IILTRDGRFKVTD 110 + L + GS I T +D A+ G + AL + G + +T G F Sbjct: 63 RASSGRLIDQRGSLIGTSNAMDIAISGRGFLPVANTSALANGLGDQPLTMTSTGSFHTDK 122 Query: 111 DGSLVSASG----KYPVLDMASVPIQ 132 DG L + SG + L ++P+ Sbjct: 123 DGVLRTDSGLVLLGWAALADGTIPVN 148 >gi|218885350|ref|YP_002434671.1| hypothetical protein DvMF_0246 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756304|gb|ACL07203.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 545 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 13/121 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF------VAS 61 G++ LA ++++ + +N++N +TVGF+ ++ F + I D+ + V+ Sbjct: 10 GVSGLLAHGEKMNVLGNNIANVNTVGFKGSRMDFQDF---INQDVYSAVGVSQVGRGVSI 66 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 G + G+F +T D A+ G +F + P+G TR G F+ +DG LV Sbjct: 67 GAIFGDFSQGAFETTNEATDLAIGGKGFFQVR-PKGQETSYYTRAGNFRFDNDGYLVDPH 125 Query: 119 G 119 G Sbjct: 126 G 126 >gi|307293787|ref|ZP_07573631.1| fagellar hook-basal body protein [Sphingobium chlorophenolicum L-1] gi|306879938|gb|EFN11155.1| fagellar hook-basal body protein [Sphingobium chlorophenolicum L-1] Length = 280 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF I L+ A + LST A+N++N ++ F+ K F ++ A +++ Sbjct: 2 SFYISLSGLKAAQTDLSTTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRT 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLVSASG 119 + +S++ G+ +T LD A+ G+ +F ++ + I TR+G F V +D +V +G Sbjct: 62 QGISQQFTQGTIETTDKTLDLAITGEGFFTVKRSADDQIGYTRNGAFSVEEDRYVVDTTG 121 >gi|295697724|ref|YP_003590962.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295413326|gb|ADG07818.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 273 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 39/267 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDID 53 M I + +A ++R VA+N+ N T G+ RT F +G+ + Sbjct: 1 MIRGLYIAASGMIAQQRREEIVANNLVNASTPGYKQDEPSLRTFGDLFLRRLGSPASGTA 60 Query: 54 QKISFVASGKEYLSKEV---------GSFISTGTELDFAL---------EG--DAWFALE 93 ++ G L + G + T DFAL G +A+FA+E Sbjct: 61 LPLA-PGVGPLNLGATMEDAPPRFTPGPLVETKRNQDFALIDPPGRQSRPGGVEAFFAVE 119 Query: 94 SPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 P G I+LTRDG+F +G L + G Y VL IP + G + Sbjct: 120 GPNGQILLTRDGQFIEGPNGQLYTGDG-YRVLAAGPNGQVIPGSSVALDA--SGAVHTYD 176 Query: 153 KVIATM--GLYSVDMSQGFVRRENSGI---SPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 A + GL +D ++++ +G+ +P + L+ V++GFLE SN + Sbjct: 177 GTGAEVFGGLAVLDAPVAALQKQGTGVYVLTPGAAGGLVPSLA--QVRQGFLEQSNVDPG 234 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM 234 M QMI + + + + +I ++SM Sbjct: 235 QTMVQMIDVVRAYEANQKVIRTVDQSM 261 >gi|15639944|ref|NP_219397.1| flagellar basal body rod protein FlgG [Treponema pallidum subsp. pallidum str. Nichols] gi|189026183|ref|YP_001933955.1| flagellar basal body rod protein FlgG [Treponema pallidum subsp. pallidum SS14] gi|3323281|gb|AAC65915.1| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018758|gb|ACD71376.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|291060315|gb|ADD73050.1| flagellar basal-body rod protein FlgG [Treponema pallidum subsp. pallidum str. Chicago] Length = 264 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 40/236 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV----------------GAIKNDIDQKISFVASG 62 + TVA+N++N +T GF+ + +F +++ + + + A+ Sbjct: 19 IDTVANNLANVNTSGFKRQRAEFEDLLYQTIRTAGTPATEDTLTPVGVRMGHGVKLAATQ 78 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + + E GS TG D A+ G+ +F L+ TRDG FKV + LV+++G Sbjct: 79 RLF---EQGSLQHTGVSGDVAIAGEGFFRVLQYDGTYAYTRDGSFKVDAERQLVTSNGLR 135 Query: 122 PVLDM------ASVPIQIPQKDEI-FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V ++ I I + + VGE+G+ + G+ + LY + G E Sbjct: 136 LVPEIIFPENYVEHSIAISKDGRVTVRVGEQGDPVEVGQ----LELYRFANNAGLA-AEG 190 Query: 175 SGISPNIPPT--PLEDLSGV----TVKRGFLEDSNANSMYEMGQMI--HLTQKFNS 222 + P + P+ G V+ FLE SN +++ EM MI +FNS Sbjct: 191 GNVFTQTPASGQPIPGRPGFEGFGKVEHKFLEMSNVSTVSEMVNMIVAQRAYEFNS 246 >gi|255592000|ref|XP_002535648.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] gi|223522414|gb|EEF26735.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] Length = 230 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ STG LD AL G +F + +P G TR G F++ G LV+A G Sbjct: 88 GTLRSTGQNLDVALAGAGYFEVSTPGGPAYTRQGSFRLDAQGRLVTAQGH 137 >gi|229160734|ref|ZP_04288726.1| Flagellar basal-body rod protein flgG [Bacillus cereus R309803] gi|228622749|gb|EEK79583.1| Flagellar basal-body rod protein flgG [Bacillus cereus R309803] Length = 257 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 41/244 (16%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F V Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTVNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVD-- 164 D L ++SG + V+ + I+IP+ ++ V G EI+Q IA + +VD Sbjct: 123 DRYLQTSSGAF-VMGENNERIRIPEGVKVA-VQADGTLYDEITQNN--IARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG------QMIH 215 + V+REN + NI P + +G+ VK LE+SN + EM +MI Sbjct: 179 TNNRLVQRENKSFTLAEGNIADLP--NGTGI-VKNHMLENSNVDMTKEMADLMASQKMIQ 235 Query: 216 LTQK 219 +Q+ Sbjct: 236 ASQR 239 >gi|160878402|ref|YP_001557370.1| hypothetical protein Cphy_0244 [Clostridium phytofermentans ISDg] gi|160427068|gb|ABX40631.1| protein of unknown function DUF1078 domain protein [Clostridium phytofermentans ISDg] Length = 271 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 15/146 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------------GAI 48 M + G + ++ + L T+++N+SN +T G++ +FS ++ G + Sbjct: 1 MMRALWTGASGMISQQTSLDTISNNLSNINTAGYKKENAQFSSLLYSKIQSKVTDSEGKV 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 K I Q S V S G+ + + D A+ G+ F++ G TR+G F Sbjct: 61 KPVIGQVGSGVRVTGIVSSFTQGTLQESNNDWDLAISGNGLFSVRDSDGNTAYTRNGSFH 120 Query: 108 VT--DDGSLVSASGKYPVLDMASVPI 131 + +G ++++ YPVL+ P+ Sbjct: 121 IAIGAEGVTLASADGYPVLNTKGQPV 146 >gi|294013086|ref|YP_003546546.1| flagellar hook protein FlgE [Sphingobium japonicum UT26S] gi|292676416|dbj|BAI97934.1| flagellar hook protein FlgE [Sphingobium japonicum UT26S] Length = 280 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF I L+ A + LST A+N++N ++ F+ K F ++ A +++ Sbjct: 2 SFYISLSGLKAAQTDLSTTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRT 61 Query: 64 EYLSKEV--GSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLVSASG 119 + +S++ G+ +T LD A+ G+ +F ++ + I TR+G F V +D +V +G Sbjct: 62 QGISQQFTQGTIETTDKTLDLAITGEGFFTVKRSADDQIGYTRNGAFSVEEDRYVVDTTG 121 >gi|126730121|ref|ZP_01745933.1| flagellar hook protein FlgE, putative [Sagittula stellata E-37] gi|126709501|gb|EBA08555.1| flagellar hook protein FlgE, putative [Sagittula stellata E-37] Length = 435 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 10/128 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL+T++DN++N+ T G++ ++ +FS +V + N V Sbjct: 3 ISSSLNAGVAGLSANATRLATISDNIANSATQGYKRVETEFSAMVTS-GNSGTYTAGGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---------LTRDGRFKVTDD 111 + L E G+ ++T D A+ G + + ++ +T F++ + Sbjct: 62 TQTNRLVAEHGALVTTNNATDLAVRGTGFLPVAQATEVLAGNGNPQMFMTTTASFRLDAE 121 Query: 112 GSLVSASG 119 G L + SG Sbjct: 122 GYLRTESG 129 >gi|167644975|ref|YP_001682638.1| hypothetical protein Caul_1010 [Caulobacter sp. K31] gi|167347405|gb|ABZ70140.1| protein of unknown function DUF1078 domain protein [Caulobacter sp. K31] Length = 556 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 16/159 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ ++ L+ ++DN++N +TVG++ FS +V A V + Sbjct: 10 GVSGLISNSSALAAISDNIANVNTVGYKRSSANFSTLVTAQSKSATYSAGGVKAQTHQFV 69 Query: 68 KEVGSFISTGTELDFALEGDAWF-ALESPRGII------LTRDGRFKVTDDGSLVSASGK 120 + G ST + LD ++ G +F E P G+ TR G F++ + G L + +G Sbjct: 70 SQQGLTQSTTSNLDLSIAGSGFFVGTEKPEGLTATDTRSFTRAGSFQLDNLGYLKNDAGL 129 Query: 121 Y-------PVLDMASV-PIQIPQKDEIFNVGEKGEISQK 151 Y PV + P + Q I NVG G ++K Sbjct: 130 YLQGWLADPVTGTITPDPSDLTQLSSI-NVGTVGGTAEK 167 >gi|262653|gb|AAB24739.1| flagellar basal body distal rod protein [Caulobacter vibrioides] Length = 262 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 23/159 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDID 53 G+AAQ + + +++N++N +TVGF+ + +F +++ G I Sbjct: 10 GMAAQ---QLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIVPTGV 66 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 Q V +G Y E G+ T + LD A++G + + P G TR G F D G Sbjct: 67 QVGGGVKAGSVYRITEQGTPTLTDSPLDLAIQGKGYMPILLPSGETAYTRAGNFSTNDQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +V+ G + I IPQ + + G + K Sbjct: 127 QIVTEDGY-----LVQPGITIPQNATDITISKSGLVQVK 160 >gi|238758110|ref|ZP_04619290.1| Flagellar hook protein FlgE [Yersinia aldovae ATCC 35236] gi|238703648|gb|EEP96185.1| Flagellar hook protein FlgE [Yersinia aldovae ATCC 35236] Length = 428 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF+ V F+++ + + K++ + +++ G+ Sbjct: 12 AASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGIT--QDF---NDGTP 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ + +F ++ S G+ R+G+FK+ ++ ++V+ A+G P Sbjct: 67 TTTNRRLDLAISQNGFFRMQDSSGGVYFARNGQFKLDENRNIVNMQGLSLTGYPATGTPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + VP+ IPQ Sbjct: 127 TVQQGANPVPLSIPQ 141 >gi|83716996|ref|YP_438391.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|167614839|ref|ZP_02383474.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis Bt4] gi|257141424|ref|ZP_05589686.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|83650821|gb|ABC34885.1| flagellar basal-body rod protein FlgG [Burkholderia thailandensis E264] Length = 262 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 56/271 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKISF----- 58 GL AQ A +L +A+N++N +T+GF+ +V F ++ I+ +DQ + Sbjct: 11 GLQAQDA---KLQAIANNLANVNTIGFKRDRVVFEDLFYRIERQPGAQLDQDNASPSGIQ 67 Query: 59 VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGS 113 + SG + + GS +TG LD A+ G + + G TR G+ + +G Sbjct: 68 MGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINAEGL 127 Query: 114 LVSASGKYPVLDMASVPIQ----IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 LV+A G +P+Q IP+ +GE G ++ ATM S G Sbjct: 128 LVNAQG---------LPLQPEISIPENATDIAIGENGIVA------ATMPGASSPSEVGQ 172 Query: 170 VRREN-------SGISPNI--------PPT---PLEDLSGVTVKRGFLEDSNANSMYEMG 211 ++ N + N+ PP P D+ G +K+G LE +N + EM Sbjct: 173 IQLANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGANVQVVEEMV 231 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 MI Q+ + T + +ML+ + A Sbjct: 232 DMIA-AQRTYEMNTKVLSAADNMLQQLSQAA 261 >gi|330983289|gb|EGH81392.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 183 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 12/121 (9%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKN-DIDQKISFV 59 NIGL+ A + L +N++N T GF++ + +F++ + G N ++ + Sbjct: 1 NIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVRTA 60 Query: 60 ASGKEYLSKEVGSFISTGT--ELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 A +++ GS ++TGT LD A+ GD +F + + + TR G F +G +V++ Sbjct: 61 AVSQQF---SQGS-LTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNS 116 Query: 118 S 118 S Sbjct: 117 S 117 >gi|297585402|ref|YP_003701182.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297143859|gb|ADI00617.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 276 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 24/157 (15%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--------------KISFVA 60 L+++L TV +N++N +T+GF+ V F++++ N++++ + + Sbjct: 15 LQKKLDTVGNNLANVNTIGFKRRDVSFNDLLFQQVNNLNRTEFEGGRDTPLGIRRGTGAI 74 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWF---ALESPRGIILTRDGRFKVT----DDGS 113 +G+ + + G+ TG +LDFA+ +F A + TR+G F T DD Sbjct: 75 AGQTEIRFDQGAIRETGRDLDFAMTEKGYFFEIAPDEEGNRRFTREGNFYYTPNPADDAE 134 Query: 114 --LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 +V++ G + VL P+ +P +E V G + Sbjct: 135 NFIVNSQGDF-VLGADGEPLVVPVPNEGVTVLNNGTV 170 >gi|317406199|gb|EFV86448.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans C54] Length = 261 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 39/232 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKEYLSKE 69 + +++N++N T GF+ + F +++ GA D Q S + +G + E Sbjct: 19 MDVISNNLANVATNGFKRGRAVFQDLMYQTLRQPGAQVGDATQLPSGLQLGTGARVAATE 78 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G +TG ELD A+ G + +E P G TRDG + +G L + SG Sbjct: 79 RIHTTGGLNNTGGELDVAINGRGFLQVELPDGTQAYTRDGALQRDQNGQLTTVSGY---- 134 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----------QKGKV-IATM----GLYSVDMSQG 168 + P+ +P ++G+ G +S Q G++ IAT GL SV + Sbjct: 135 -VIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQIGQLQIATFINPTGLQSVGENL- 192 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ + SG P P D +G T + ++E SN N E+ MI + + Sbjct: 193 YLETDASG--PANLLQPGVDGAG-TFMQNYVETSNVNVAEELVNMITTQRAY 241 >gi|283955452|ref|ZP_06372950.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 414] gi|283793079|gb|EFC31850.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 414] Length = 544 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 23 ADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 A+N++N +T GF+ +F ++ V + Q S + E GSF+++ + Sbjct: 22 ANNIANVNTTGFKYSDAQFKDIFYSTVTTQSTNPAQGGYGSGSASSNVVFEQGSFVASDS 81 Query: 79 ELDFALEGDAWFA-LESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 E D AL+G +F L + TR+G FK +G LV + G + + M I D Sbjct: 82 EFDVALQGKGFFGVLGADNNAYYTRNGTFKRDANGYLVDSYGNFVLGTMNPAFTGINYSD 141 Query: 138 EI 139 + Sbjct: 142 RV 143 >gi|323498420|ref|ZP_08103416.1| flagellar hook protein FlgE [Vibrio sinaloensis DSM 21326] gi|323316493|gb|EGA69508.1| flagellar hook protein FlgE [Vibrio sinaloensis DSM 21326] Length = 438 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 17/147 (11%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKE 64 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 4 VALSGISAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTNAKTTPGGGVQAAKV 63 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASGK 120 GS + T +D + G +FA+ +P LTR+G F + D +V+A+ + Sbjct: 64 AQQFHEGSSVYTNNPMDLRISGTGFFAVAKDRLTPTTNELTRNGAFHLNKDNYMVTANDE 123 Query: 121 Y-----------PVLDMASVPIQIPQK 136 + VL PI IP++ Sbjct: 124 FLLGYQVNGDTGDVLSYEPSPINIPKE 150 >gi|226225729|ref|YP_002759835.1| flagellar hook protein FlgE [Gemmatimonas aurantiaca T-27] gi|226088920|dbj|BAH37365.1| flagellar hook protein FlgE [Gemmatimonas aurantiaca T-27] Length = 506 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 18/119 (15%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQK-ISFVASGKEYLSKEVG 71 R+ + +N++N +TV F+ +V F E + GA + DQ I+ + G L ++G Sbjct: 18 RMDVIGNNIANVNTVAFKAGRVTFKEGFAQLLAGASRPPGDQGGINPIQIG---LGMQIG 74 Query: 72 S---------FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 S +TG D A++GD++F + TR G F+V G LVS + + Sbjct: 75 SIDQIFNQGNLETTGLNTDIAIQGDSFFVVRKGNQSFYTRAGNFQVDALGQLVSPANGF 133 >gi|229918635|ref|YP_002887281.1| hypothetical protein EAT1b_2922 [Exiguobacterium sp. AT1b] gi|229470064|gb|ACQ71836.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sp. AT1b] Length = 303 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 26/133 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ + +L V +N++N +T G++ +V F ++V Q++ ++G Sbjct: 8 GISGLKNFQSKLDVVGNNIANVNTFGYKKGRVTFKDLV-------SQQVGSASAGNATTG 60 Query: 68 ----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 KEVG + +TG LD + G+ ++A I TR G F Sbjct: 61 GVNPKEVGLGGTMATVDNVYNQGAMQNTGRALDVGISGEGFYATMVNGQIQYTRAGNFYT 120 Query: 109 TDDGSLVSASGKY 121 + G+LV+ G Y Sbjct: 121 DNQGNLVTGDGTY 133 >gi|312112590|ref|YP_003990906.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] gi|311217691|gb|ADP76295.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] Length = 285 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 37/197 (18%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVASGKEY------- 65 L+Q+L +++N++N++T GF+ + F E++ ++ D+ +G Y Sbjct: 17 LQQQLDVISNNIANSNTAGFKRRETSFGELLAQQFTNLPQDEAPRLTPNGLRYGVGARLA 76 Query: 66 ---LSKEVGSFISTGTELDFALEGDAWF---ALESPRG---IILTRDGRFKVTDDGS--- 113 + + G+ + T LD AL + F ++ G I TR G F +T Sbjct: 77 ETNIVLKQGAIMQTDRPLDVALTKEGQFFRVLIQGENGTQEIGYTRAGAFYLTPSAGNQN 136 Query: 114 ---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 LV++ G PVLD + PI +P N + EIS G + AT + + Sbjct: 137 VLMLVTSDGN-PVLDENNAPIWLP------NGYKDIEISDNGTITATAPDGRI------M 183 Query: 171 RRENSGISPNIPPTPLE 187 RR N G++ + P L+ Sbjct: 184 RRVNIGVTSILRPQLLQ 200 >gi|27904804|ref|NP_777930.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372207|sp|Q89AH7|FLGG_BUCBP RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|27904202|gb|AAO27035.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 260 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 31/165 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------F 58 GL AQ + ++ +A+N++N +T GF+ K F +++ K S Sbjct: 11 GLDAQ---QINMNVIANNLANVNTNGFKRSKAIFEDLIYHTVQQPGSKSSEETISPSGFQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G ++ E G+ T + D A+ G+ +F ++ P G TRDG F++ +G Sbjct: 68 LGTGVRPITTEREHSQGNLSKTNSLKDVAINGNGFFQVQLPDGNAAYTRDGSFQINPNGQ 127 Query: 114 LVSASGKY--PVLDMAS------------VPIQIPQKDEIFNVGE 144 LV+ +G PV++ + + ++IP++ + VG+ Sbjct: 128 LVTNNGFLIQPVINFPANGNNMSVSRDGIITVRIPEQTQPIRVGK 172 >gi|89056664|ref|YP_512115.1| hypothetical protein Jann_4173 [Jannaschia sp. CCS1] gi|88866213|gb|ABD57090.1| flagellar hook protein FlgE putative [Jannaschia sp. CCS1] Length = 452 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 21/134 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A RL+T+ADN++N+ T G++ FS +V IDQ + Sbjct: 16 ISSSLNAGVAGLSVNASRLATIADNIANSGTNGYKRATADFSSMV------IDQGGGTYS 69 Query: 61 SG-----KEYLSKEVGSFISTGTELDFALEGDAWF------ALESPRG----IILTRDGR 105 +G L + G+ +T D A+ G + A+ + G + L G Sbjct: 70 AGGVRVTTGRLIDQSGALATTNNGTDLAVRGRGFLPVTRSSAVNAAAGAELPLYLATTGS 129 Query: 106 FKVTDDGSLVSASG 119 F+ DG LV++SG Sbjct: 130 FRTDADGYLVTSSG 143 >gi|56965598|ref|YP_177332.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] gi|56911844|dbj|BAD66371.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] Length = 265 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 108/256 (42%), Gaps = 34/256 (13%) Query: 13 LALEQRLSTVADNMSNTDTVGFRT------------IKVKFSEVVGAI-KNDIDQKISFV 59 LA + +A+N++N T G++ ++ + G + K + + V Sbjct: 13 LAAQYHQDMLANNLANAQTPGYKAEQSVSRAFPTFLMEAQSVSKAGTVQKQGLGSLATAV 72 Query: 60 ASGKEYLSKEVGSFISTGTELDFAL------EGDA-WFALESPRGIILTRDGRFKVTDDG 112 ++ + G TG D AL E +A +FA+ + GI TR+G +V G Sbjct: 73 YLQEQQTNARQGDIQETGNTTDLALLQTGLEENNAVFFAVMTENGIRYTRNGDLQVDSQG 132 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 L +A G + + PIQ+ E F+V E G + G+ T+ + D + + R Sbjct: 133 RLATAGG-HLLQSTEGGPIQV--DSEAFSVDESGAVVVAGENRGTIEIVLADDTN-ELER 188 Query: 173 ENSGIS-------PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 E G+ P+ P D S +++ +E SN ++ M M+ + F + Sbjct: 189 EGDGLYMLENGELPSAHGNPDIDFS---IRQAAIERSNVDTAASMNAMLSAYRLFEANQK 245 Query: 226 LIDENEKSMLEAIRNI 241 ++ ++SM +A+ + Sbjct: 246 VVQAYDQSMDKAVNEV 261 >gi|322378470|ref|ZP_08052922.1| flagellar hook protein FlgE [Helicobacter suis HS1] gi|321149114|gb|EFX43562.1| flagellar hook protein FlgE [Helicobacter suis HS1] Length = 718 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 20/143 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A+EGD +F + RG+ TR G F +GSL Sbjct: 70 LGVGVDATTKIFSQGNLQNTDVKTDLAIEGDGFFVISPDRGVTRNFTRSGEFLFDANGSL 129 Query: 115 VSASGKYPVLDMASVPIQIPQKD 137 V+ +G Y V P + KD Sbjct: 130 VT-TGGYVVQGWVRDPKDMGSKD 151 >gi|74101659|gb|AAZ99749.1| FlgFL [Aeromonas hydrophila] Length = 244 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 63/251 (25%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EV 70 A+N++N +T GFRT D ++ ++ +G YLS+ + Sbjct: 23 ANNLANVNTAGFRT--------------DFERVSAYALTGDGYLSRVMAREEMAGTDFKA 68 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ + TG +LD A+ G+ + +++ G TR G +V +G L++ +G+ PVL Sbjct: 69 GALMQTGRKLDVAVRGEGFITVQTADGKEAYTRAGNLEVDAEG-LLTLNGR-PVLGDGGE 126 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 + +D F G+ G +S + G +D+ G + P P+E + Sbjct: 127 MVLPAYRDLSF--GKDGSLS----ITPPGGGARLDV----------GRLKLVNPDPVELV 170 Query: 190 SG------------------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G V + GFLE +N N++ E+ + LT+ F L+ + Sbjct: 171 KGPDGLFRLRQGGDAETSEQVVLASGFLEGANVNAVDELISSMSLTRNFELQVKLMKTAD 230 Query: 232 KSMLEAIRNIA 242 + R I+ Sbjct: 231 DQARQGARLIS 241 >gi|302382558|ref|YP_003818381.1| fagellar hook-basal body protein [Brevundimonas subvibrioides ATCC 15264] gi|302193186|gb|ADL00758.1| fagellar hook-basal body protein [Brevundimonas subvibrioides ATCC 15264] Length = 478 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG----- 62 G++ A L+ ++ N++N +TVG++ +FS VV N Q + A G Sbjct: 10 GVSGLTANSAALAAISQNIANVNTVGYKRTAAEFSTVV----NSQSQGAGYSAGGVLANT 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWF-------ALESPRGIILTRDGRFKVTDDGSLV 115 + Y+++ G T + D + G +F L++ + TR G F+V + G L Sbjct: 66 RNYIAQG-GQLQRTTSSTDLGIAGQGFFVTTEKAEGLDAGDARLFTRAGAFRVDNFGYLK 124 Query: 116 SASGKY----PVLDMASVPIQIPQKDEI--FNVGEKG---EISQKGKV------------ 154 + +G Y PV +P ++ NVG G E + + +V Sbjct: 125 NTAGLYLQGWPVNAEGDIPTDPSDLGKLTSINVGSVGGTAEATTRAQVNANLKSSQAVSA 184 Query: 155 -IATMGLYSVDMSQGFVRRENSGISPNIPPT-PLEDLSG--VTVKRGFLEDSNAN 205 IAT + MS + +G P+ T P+ D G TV FL+ +N N Sbjct: 185 DIATYSTATKSMST-YNATTGTGFKPDFQITVPVSDSKGGQRTVAYSFLKTANPN 238 >gi|329898289|ref|ZP_08272372.1| Flagellar hook protein flgE [gamma proteobacterium IMCC3088] gi|328920854|gb|EGG28297.1| Flagellar hook protein flgE [gamma proteobacterium IMCC3088] Length = 975 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 15/140 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L A LS ++N++N+ T GF+ F ++ Q+ S V G+ Sbjct: 2 SFYTSLTGLNAATTELSVTSNNIANSATAGFKRSSASFGDIFATSPL---QRASAVV-GQ 57 Query: 64 EYLSKEVGSFISTG------TELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 KE+ S G LD A+ GD +F L+S G + TR+G F + + +V+ Sbjct: 58 GVALKEISQEFSQGFVQFSSNSLDLAITGDGFFPLQSSDGSRVYTRNGSFMLNEQNQMVN 117 Query: 117 ASGKYPVLDMASVPIQIPQK 136 ++G+ + S+P+ K Sbjct: 118 SAGQA----LLSLPVDSTNK 133 >gi|317047692|ref|YP_004115340.1| flagellar basal-body rod protein FlgF [Pantoea sp. At-9b] gi|316949309|gb|ADU68784.1| flagellar basal-body rod protein FlgF [Pantoea sp. At-9b] Length = 252 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 29/242 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA LEQ+ S A N++N T GFR + V + + V + Sbjct: 11 AASQTLEQQ-SVTASNLANASTPGFRAQLEAYRAV--PVNGWSLPTRTLVTASTPGADMS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ +TG LD A+ D W A+ + G TR+G +++ G +++ G PV+ Sbjct: 68 AGAMDNTGRALDVAVGQDGWLAVRTADGSEAYTRNGNIQISSTG-ILTIQGN-PVMGDGG 125 Query: 129 VPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 PI +PQ E+ + G I+ + + L V + ++R + G+ Sbjct: 126 -PIAVPQGAEL-TIAADGSITSRNPGDAPNATVQIGRLKLVKATGQELQRSDDGM---FR 180 Query: 183 PT---------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDEN 230 PT L V V G LE SN + M MI ++F + + +DEN Sbjct: 181 PTAQTQATRGAALAQDVNVQVSPGVLEGSNVKPVETMVDMIANARRFEMQMKVISNVDEN 240 Query: 231 EK 232 E+ Sbjct: 241 EQ 242 >gi|296126058|ref|YP_003633310.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] gi|296017874|gb|ADG71111.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] Length = 441 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 14/136 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M S G++ + R+ V +N++N +T GF+ +V F +++ GA K D+ Sbjct: 1 MMRSLFAGVSGLQNHQTRMDVVGNNIANVNTYGFKRGRVTFKDMISQSLSGAAKPQEDRG 60 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + + + + + G+ TG D A++G+ +F + TR+G F Sbjct: 61 GINPQQVGLGMMVATIDTIHTQ-GALQVTGVNTDLAIQGEGFFIEKRGNNSYYTRNGAFS 119 Query: 108 VTDDGSLVSASGKYPV 123 + DG LV+ S Y V Sbjct: 120 LDRDGYLVNPSIGYKV 135 >gi|84514825|ref|ZP_01002188.1| flagellar basal-body rod protein FlgG [Loktanella vestfoldensis SKA53] gi|84510984|gb|EAQ07438.1| flagellar basal-body rod protein FlgG [Loktanella vestfoldensis SKA53] Length = 273 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 56/266 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----IDQKISFVASGKEYLSKEVGSFI 74 ++ V++N++N+ T FR FS++ D + + + + G + S E G + Sbjct: 16 IAVVSNNVANSGTTAFRKSNTSFSDLYSGGSADSVARLSKGVGSIVDGTKQ-STEQGGLL 74 Query: 75 STGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSLVSAS--------- 118 + L+ AL G F +P I TRDG F + DG L +++ Sbjct: 75 TRDGVLNLALIGKGMFVSAAPSATAGAIGTISYTRDGEFSLDKDGQLRTSTNDFVMGYGP 134 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKG------EISQKGKVIATMG------------- 159 G P V +++P K + G+ G EI GK++AT G Sbjct: 135 GVTPAEATPLVNLKVPVKKD----GDGGAQLTALEIGTDGKLMATYGSAPAELLGTIAIA 190 Query: 160 -------LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 L + M++ F+ + +G +P I +D G+ ++ G LE SN + E+ Sbjct: 191 SFPNEIALRQIGMNR-FLATDGAG-TPKI-GVGGQDGFGM-IQSGTLETSNVDLTIELTD 246 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI Q+F+ + ++ + M+E + Sbjct: 247 MIRAQQQFSGSSRIL-QTYSDMIEKL 271 >gi|254475161|ref|ZP_05088547.1| flagellar hook protein FlgE [Ruegeria sp. R11] gi|214029404|gb|EEB70239.1| flagellar hook protein FlgE [Ruegeria sp. R11] Length = 441 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 16/144 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ A RL++++DN++N+ T G++ ++ F +V V Sbjct: 10 ISSSLNAGVSGLTANASRLASISDNIANSSTAGYKRVQTDFHSMVMGSSGGT-YSAGGVR 68 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES----------PRGIILTRDGRFKVTD 110 + L E G +ST D A+ G + S P+ ++LT F+ Sbjct: 69 TTNVRLIDERGPLVSTNNATDLAVRGRGMLPVTSMTEVEVGASNPQ-MMLTTTASFRTNA 127 Query: 111 DGSLVSASG----KYPVLDMASVP 130 DG L + SG +P ++P Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIP 151 >gi|330502734|ref|YP_004379603.1| flagellar hook protein FlgE [Pseudomonas mendocina NK-01] gi|328917020|gb|AEB57851.1| flagellar hook protein FlgE [Pseudomonas mendocina NK-01] Length = 456 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 8/121 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF 58 SFNIGL+ A L+ +N++N T GF+ + +F S ++G KN + Sbjct: 2 SFNIGLSGLRAATSDLNVTGNNIANAGTAGFKQSRAEFADLYASSMLGTGKNPQGSGV-L 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +A + ++ G+ T LD A+ G+ +F + + TR G F DG +V+ Sbjct: 61 LADVAQLFNQ--GNINYTQNALDMAINGNGFFMTSNNGEMSYTRSGYFGTDRDGYIVNNF 118 Query: 119 G 119 G Sbjct: 119 G 119 >gi|222834410|gb|EEE72887.1| predicted protein [Populus trichocarpa] Length = 170 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 20/118 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---------IDQKISFVASG 62 + +++N++N T GF+ + F E++ GA+ +D I + VA+ Sbjct: 1 MDVISNNLANVSTTGFKRSRAVFEEMMYQTIRQPGAMSSDQTVLPSGMQIGTGVRPVATE 60 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + + G+ TG D A+ G+ +F + P G TRDG F+V +G LV++SG Sbjct: 61 RIHTQ---GNPQQTGNAKDVAIIGNGFFQVTMPDGTTSYTRDGSFQVDQNGQLVTSSG 115 >gi|200390428|ref|ZP_03217039.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602873|gb|EDZ01419.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 403 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIP 140 >gi|161503735|ref|YP_001570847.1| flagellar hook protein FlgE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865082|gb|ABX21705.1| hypothetical protein SARI_01820 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 402 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIP 140 >gi|183598619|ref|ZP_02960112.1| hypothetical protein PROSTU_02019 [Providencia stuartii ATCC 25827] gi|188020798|gb|EDU58838.1| hypothetical protein PROSTU_02019 [Providencia stuartii ATCC 25827] Length = 260 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 40/235 (17%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND---IDQKISFVASGKEY 65 + L +++N++N T GF+ + F +++ GA+ ++ + + + Sbjct: 16 QTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNIRQPGAMSSEQTSLPSGLQLGTGSRPV 75 Query: 66 LSKEV---GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKY 121 + + G+ TG D A++G + ++ P G TRDG + DG LV++SG Y Sbjct: 76 ATMRIHSQGALNKTGNTTDIAIKGQGFLHVQLPDGTDAYTRDGALQPNQDGQLVTSSG-Y 134 Query: 122 PVLDMASVP-IQIPQKDEIFNVGEKGEIS----------QKGKVIATM-----GLYSVDM 165 + VP I IP + G +S Q G++ T GL S M Sbjct: 135 QI-----VPAITIPDNANSLTIARDGTVSITVYGDNQPQQIGQITLTTFINDAGLES--M 187 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + S +PN P + +G+ + LE SN N E+ MI + + Sbjct: 188 GENLYMETASSGAPN-ESAPGTNGAGLLYQH-MLETSNVNVAEELVNMIQTQRAY 240 >gi|238793998|ref|ZP_04637616.1| Flagellar hook protein FlgE [Yersinia intermedia ATCC 29909] gi|238726630|gb|EEQ18166.1| Flagellar hook protein FlgE [Yersinia intermedia ATCC 29909] Length = 425 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 67/135 (49%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF+ V F+++ + + K++ + +++ G+ Sbjct: 12 AASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGIT--QDF---NDGTP 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ +F ++ S G+ R+G+FK+ ++ ++V+ A+G P Sbjct: 67 TTTNRRLDLAISQSGFFRMQDSSGGVFFARNGQFKLDENRNIVNMQGLSLTGYPATGTPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + VP+ IPQ Sbjct: 127 TVQQGANPVPLSIPQ 141 >gi|153953797|ref|YP_001394562.1| flagellar basal body rod protein FlgG [Clostridium kluyveri DSM 555] gi|219854413|ref|YP_002471535.1| hypothetical protein CKR_1070 [Clostridium kluyveri NBRC 12016] gi|146346678|gb|EDK33214.1| FlgG1 [Clostridium kluyveri DSM 555] gi|219568137|dbj|BAH06121.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 255 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 18/136 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKN------- 50 M SF ++ + E + + +N++N +TVGF+ +K F+EV+ I+N Sbjct: 1 MIRSFYTAVSGMIVQEAKQDVITNNLANVNTVGFKQDDLKSTPFNEVL--IQNYDKVVNG 58 Query: 51 -DIDQKISFVASGKEYLSKEVG----SFISTGTELDFALEGDAWFALESPRGI-ILTRDG 104 ++ I + G + S + G + ST DFA++G +F + G TRDG Sbjct: 59 KNVRNVIGSMTLGSKIDSVDTGFTQGTIESTDISTDFAIDGRGFFTVRREDGNEFYTRDG 118 Query: 105 RFKVTDDGSLVSASGK 120 F V G LV SG Sbjct: 119 HFHVNTQGILVDDSGN 134 >gi|320107029|ref|YP_004182619.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] gi|319925550|gb|ADV82625.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] Length = 408 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 5/122 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFV 59 SF+I L+ A L T+ +N++N ++V ++ V FS++ +G + Q++ Sbjct: 3 SFSIALSGLKADSVALDTIGNNLANMNSVAYKKQNVNFSDLFYQTIGVSGANTPQQVGLG 62 Query: 60 ASGKEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + + G F G+ A+ GD +F + + LTR+G F++ G+L+++ Sbjct: 63 TQVSDISTDYTQGGFNPGGSSTQMAINGDGFFVVSNGGVQELTRNGDFQLDSSGNLITSD 122 Query: 119 GK 120 G+ Sbjct: 123 GQ 124 >gi|322616547|gb|EFY13456.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620512|gb|EFY17376.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622506|gb|EFY19351.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629657|gb|EFY26432.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632623|gb|EFY29369.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636882|gb|EFY33585.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641580|gb|EFY38218.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644070|gb|EFY40616.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650030|gb|EFY46448.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653955|gb|EFY50278.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658487|gb|EFY54749.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663345|gb|EFY59547.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670079|gb|EFY66219.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674857|gb|EFY70948.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676673|gb|EFY72740.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682595|gb|EFY78614.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686652|gb|EFY82631.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195766|gb|EFZ80942.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198342|gb|EFZ83446.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203174|gb|EFZ88204.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209177|gb|EFZ94114.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209681|gb|EFZ94610.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217863|gb|EGA02578.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222151|gb|EGA06535.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224923|gb|EGA09181.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229665|gb|EGA13788.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232890|gb|EGA16986.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240625|gb|EGA24667.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242939|gb|EGA26960.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250256|gb|EGA34145.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252631|gb|EGA36469.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258841|gb|EGA42494.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261030|gb|EGA44623.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266939|gb|EGA50424.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269980|gb|EGA53429.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 403 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIP 140 >gi|89056684|ref|YP_512135.1| flagellar basal body rod protein FlgG [Jannaschia sp. CCS1] gi|88866233|gb|ABD57110.1| flagellar basal-body rod protein FlgG [Jannaschia sp. CCS1] Length = 261 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 44/244 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVA 60 G++AQ + R+ +++N++N T G+ + F+++ GAI N D + V Sbjct: 10 GMSAQ---QLRVDVISNNIANMSTTGYSPRRADFADLHYQQMVRAGAI-NASDGTV--VP 63 Query: 61 SGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 +G + ++ E G+ +TG +LD A+EG + + P G TRDG + T Sbjct: 64 AGVQIGLGVRPAAVTVTWEQGTLGATGGQLDVAIEGRGYLEVTLPSGDNAYTRDGALQRT 123 Query: 110 DDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 DG +V+ G + V ++P I I E+F +GEI + +++ + + Sbjct: 124 GDGLIVTNDG-FEVNPGITIPDDAQEITINANGEVF-ASFRGEI--QPQLLGQLNMVRFT 179 Query: 165 MSQG--------FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G F+ SG +P + P ED G T ++G++E S+ +++ E+ +I Sbjct: 180 NDNGLEAIGSNLFLETGASG-AP-LAGDPGEDGMG-TFRQGYVEQSSVDAVREITDLIEA 236 Query: 217 TQKF 220 + + Sbjct: 237 QRGY 240 >gi|257457574|ref|ZP_05622741.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] gi|257444960|gb|EEV20036.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] Length = 264 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 20/118 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEV----------------VGAIKNDIDQKISFVASG 62 + TVA+N++N +T GF+ + +F ++ + + ++ A+ Sbjct: 19 IDTVANNLANVNTSGFKKQRAEFEDLLYQTIRAAGTPATEDTITPVGVEMGHGAKLAATQ 78 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + E GS TG D A+ G+ +F L+ TRDG FK+ D LV+++G Sbjct: 79 RNF---EQGSLQQTGVSTDVAIAGEGFFRVLQYDGTYAYTRDGSFKIDADRQLVTSNG 133 >gi|291276999|ref|YP_003516771.1| flagellar hook protein FlgE [Helicobacter mustelae 12198] gi|290964193|emb|CBG40039.1| Putative flagellar hook protein, FlgE [Helicobacter mustelae 12198] Length = 600 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 30/148 (20%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 L ++++N++N +T G+R +F ++ +N S V+S Y +S + Sbjct: 19 LDSISNNIANVNTPGYREHIPEFKTLLS--RNIASVNGSTVSSDSNYGVSVSSNAISTKS 76 Query: 71 GSFISTGTELDFALEGDAWF---------------ALESPRGIILTRDGRFKVTDDGSLV 115 G + + + D A EG WF E + TRDG F DG LV Sbjct: 77 GDYKRSDGDFDMAYEGKGWFIVGKNSKGSLSINEDGYEGNQQNYFTRDGSFSRDSDGYLV 136 Query: 116 SASGKYPV-LDMASVPIQI----PQKDE 138 +A+G Y LD+ + + P K+E Sbjct: 137 NAAGYYVYGLDLGKIKGNVLTDNPNKEE 164 >gi|161614600|ref|YP_001588565.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168237259|ref|ZP_02662317.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244776|ref|ZP_02669708.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449419|ref|YP_002045176.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736988|ref|YP_002114176.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161363964|gb|ABX67732.1| hypothetical protein SPAB_02350 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407723|gb|ACF67942.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712490|gb|ACF91711.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289882|gb|EDY29243.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205336442|gb|EDZ23206.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 403 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIP 140 >gi|281306984|pdb|3A69|A Chain A, Atomic Model Of The Bacterial Flagellar Hook Based On Docking An X-Ray Derived Structure And Terminal Two Alpha- Helices Into An 7.1 Angstrom Resolution Cryoem Map Length = 402 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 59 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 115 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 116 TGYPATGTPPTIQQGANPAPITIP 139 >gi|56413836|ref|YP_150911.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362759|ref|YP_002142396.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128093|gb|AAV77599.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094236|emb|CAR59741.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 403 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIP 140 >gi|15612557|ref|NP_224210.1| flagellar basal body rod protein FlgG [Helicobacter pylori J99] gi|4156115|gb|AAD07066.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN) [Helicobacter pylori J99] gi|317015022|gb|ADU82458.1| flagellar basal body rod protein FlgG [Helicobacter pylori Gambia94/24] Length = 262 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 LA + + T ++N++N +T GF+ + F+++ G ++ + G Sbjct: 13 LAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + S G+ LD A+ G +F ++ P G TR G FK+ + G+LV++ Sbjct: 73 RPSAITKMFSQGSPKETENNLDIAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G Y ++ I +P+ N+G G +S Sbjct: 133 G-YLLIPQ----ITLPEDTTQVNIGVDGTVS 158 >gi|308185371|ref|YP_003929504.1| flagellar basal body rod protein FlgG [Helicobacter pylori SJM180] gi|308061291|gb|ADO03187.1| flagellar basal body rod protein FlgG [Helicobacter pylori SJM180] Length = 262 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 LA + + T ++N++N +T GF+ + F+++ G ++ + G Sbjct: 13 LAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + S G+ LD A+ G +F ++ P G TR G FK+ + G+LV++ Sbjct: 73 RPSAITKMFSQGSPKETENNLDIAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G Y ++ I +P+ N+G G +S Sbjct: 133 G-YLLIPQ----ITLPEDTTQVNIGVDGTVS 158 >gi|16760053|ref|NP_455670.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764533|ref|NP_460148.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142176|ref|NP_805518.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179694|ref|YP_216111.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167553035|ref|ZP_02346785.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994041|ref|ZP_02575133.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264030|ref|ZP_02686003.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467129|ref|ZP_02700971.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822620|ref|ZP_02834620.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442954|ref|YP_002040431.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197250199|ref|YP_002146866.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265088|ref|ZP_03165162.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245171|ref|YP_002215960.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204930842|ref|ZP_03221715.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353085|ref|YP_002226886.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857315|ref|YP_002243966.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161844|ref|ZP_03347554.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424680|ref|ZP_03357445.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582037|ref|ZP_03363863.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648926|ref|ZP_03378979.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865505|ref|ZP_03387624.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584319|ref|YP_002638117.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911003|ref|ZP_04654840.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289806609|ref|ZP_06537238.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289828580|ref|ZP_06546405.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392287|sp|P0A1J1|FLGE_SALTY RecName: Full=Flagellar hook protein flgE gi|60392288|sp|P0A1J2|FLGE_SALTI RecName: Full=Flagellar hook protein flgE gi|25511789|pir||AB0640 flagellar hook protein FlgE [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|47673|emb|CAA36022.1| flgE protein (AA 1-403) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419694|gb|AAL20107.1| hook protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502347|emb|CAD08301.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi] gi|29137806|gb|AAO69367.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62127327|gb|AAX65030.1| flagellar biosynthesis, hook protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194401617|gb|ACF61839.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195630413|gb|EDX49039.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213902|gb|ACH51299.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243343|gb|EDY25963.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939687|gb|ACH77020.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204320301|gb|EDZ05505.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272866|emb|CAR37795.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322416|gb|EDZ10255.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328054|gb|EDZ14818.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341012|gb|EDZ27776.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347322|gb|EDZ33953.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709118|emb|CAR33451.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468846|gb|ACN46676.1| flagellar hook protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246388|emb|CBG24197.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992951|gb|ACY87836.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157718|emb|CBW17210.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912164|dbj|BAJ36138.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086383|emb|CBY96156.1| Flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223795|gb|EFX48858.1| Flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322714164|gb|EFZ05735.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129447|gb|ADX16877.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623708|gb|EGE30053.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628165|gb|EGE34508.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988068|gb|AEF07051.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 403 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIP 140 >gi|238788315|ref|ZP_04632109.1| Flagellar hook protein FlgE [Yersinia frederiksenii ATCC 33641] gi|238723561|gb|EEQ15207.1| Flagellar hook protein FlgE [Yersinia frederiksenii ATCC 33641] Length = 428 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 67/135 (49%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF+ V F+++ + + K++ + +++ G+ Sbjct: 12 AASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGIT--QDF---NDGTP 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ +F ++ S G+ R+G+FK+ ++ ++V+ A+G P Sbjct: 67 TTTNRRLDLAISQSGFFRMQDSSGGVYFARNGQFKLDENRNIVNMQGLSLTGYPATGTPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + VP+ IPQ Sbjct: 127 TVQQGANPVPLSIPQ 141 >gi|293605005|ref|ZP_06687401.1| flagellar basal-body rod protein FlgG [Achromobacter piechaudii ATCC 43553] gi|292816610|gb|EFF75695.1| flagellar basal-body rod protein FlgG [Achromobacter piechaudii ATCC 43553] Length = 261 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 19/145 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKEYLSKE 69 + +++N++N T GF+ + F +++ GA D Q S + +G + E Sbjct: 19 MDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDATQLPSGLQLGTGARVAATE 78 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVL 124 G+ +TG E+D A+ G + +E P G TRDG + +G L + SG Sbjct: 79 RIHTAGNLNNTGGEMDIAINGRGFLQVELPDGTQGYTRDGALQRDQNGQLTTVSGY---- 134 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS 149 + P+ +P ++G+ G +S Sbjct: 135 -VIQPPMNVPDNALSISIGKDGIVS 158 >gi|150390478|ref|YP_001320527.1| hypothetical protein Amet_2716 [Alkaliphilus metalliredigens QYMF] gi|149950340|gb|ABR48868.1| protein of unknown function DUF1078 domain protein [Alkaliphilus metalliredigens QYMF] Length = 441 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 19/133 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISF---V 59 A + R+ + +N++N +TVG++ +V F EV G Q++ V Sbjct: 14 AHQLRMDAIGNNIANVNTVGYKGTRVTFQEVFSQTIRGAGAPQGGRGGTNPQQVGLGVNV 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVS 116 AS + + GS STG D + GD +F + S + TR G F++ + G+L++ Sbjct: 74 ASMSTFHVR--GSAESTGYNTDLMINGDGFFIVSSDANDQNHTYTRAGNFELDEAGNLIT 131 Query: 117 ASGKYPVLDMASV 129 G+ + +M V Sbjct: 132 PGGQRVMGNMYDV 144 >gi|301168505|emb|CBW28095.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 261 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 38/261 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR------------TIKVKFSEVVGAIKNDIDQK 55 G+AAQ E +ST+++N++N +T G++ TI+ S N++ + Sbjct: 11 GMAAQ---EMNVSTISNNIANVNTTGYKKQRTEIQDLSYQTIQEAGSRSSADTMNNVGVQ 67 Query: 56 ISFVA--SG--KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 I A SG KE+ GS T D + G+ +F + P + TRDG F V Sbjct: 68 IGSGAKVSGVRKEFTQ---GSQQITNNPYDLMISGEGFFGIMMPNNEVRYTRDGSFSVDA 124 Query: 111 DGSLVSASGK--YP--VLDMASVPIQIPQKDEI-FNVGEKGEISQKGKV-----IATMGL 160 G+LV+ G +P V + + I + + + E + G++ I +GL Sbjct: 125 SGTLVNKQGYRVFPSFVFPPGTKSVHIAHDGTVEAYLSNQIEPTILGQIPVFTFINPVGL 184 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 S M+ + R + NI + + T+ +G LE SN + M EM +I + + Sbjct: 185 KSTGMNLYTITRSSGQAIQNIA----GNANAGTIAQGALESSNVSIMNEMTSLIKAQRAY 240 Query: 221 NSITTLIDENEKSMLEAIRNI 241 + ++ ++ ML+ + NI Sbjct: 241 EMNSKVMGVADQ-MLQTVNNI 260 >gi|27363705|ref|NP_759233.1| flagellar hook protein FlgE [Vibrio vulnificus CMCP6] gi|37679147|ref|NP_933756.1| flagellar hook protein FlgE [Vibrio vulnificus YJ016] gi|320157109|ref|YP_004189488.1| flagellar hook protein FlgE [Vibrio vulnificus MO6-24/O] gi|27359821|gb|AAO08760.1| Flagellar hook protein flgE [Vibrio vulnificus CMCP6] gi|37197889|dbj|BAC93727.1| flagellar hook protein FlgE [Vibrio vulnificus YJ016] gi|319932421|gb|ADV87285.1| flagellar hook protein FlgE [Vibrio vulnificus MO6-24/O] Length = 434 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 17/145 (11%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKE 64 + L+ A + L+T ++N++N +T GF+ + +F +V N V + + Sbjct: 4 VSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTNAKTTPGGGVQANQV 63 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGII----LTRDGRFKVTDDGSLVSASGK 120 GS I T +D + G +FA+ R + LTR+G F ++ D +V+A+ + Sbjct: 64 AQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRMVPNQNELTRNGAFHLSKDNYMVTANDE 123 Query: 121 Y-------PVL-DMASV---PIQIP 134 Y P+ D+AS P+ IP Sbjct: 124 YLLGYQVDPLSGDVASYEPQPLNIP 148 >gi|268589980|ref|ZP_06124201.1| flagellar basal-body rod protein FlgG [Providencia rettgeri DSM 1131] gi|291314698|gb|EFE55151.1| flagellar basal-body rod protein FlgG [Providencia rettgeri DSM 1131] Length = 260 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 47/245 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + L +++N++N T GF+ + F +++ GA+ ++ S + Sbjct: 11 GLDAQ---QTNLDVISNNLANVSTNGFKRQRAVFEDLMYQNIRQPGAMSSEQTSLPSGLQ 67 Query: 61 SGKEYLSKEV--------GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 G S+ V G+ TG D A+ G + ++ P G TRDG + D Sbjct: 68 MGTG--SRPVATMRIHAQGALNKTGNTNDIAIRGQGFLHVQMPDGTDAYTRDGALQPNQD 125 Query: 112 GSLVSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEIS----------QKGKVIATM-- 158 G LV++SG Y + VP I IP ++ G ++ Q G++ T Sbjct: 126 GQLVTSSG-YQI-----VPAIMIPDNANSLSIARDGTVTITVYGDNQPQQIGQITLTTFI 179 Query: 159 ---GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 GL S M + S +PN P + +G+ + + LE SN N E+ MI Sbjct: 180 NDAGLES--MGENLYMETASSGAPN-ESAPGTNGAGL-LYQNMLETSNVNVAEELVNMIQ 235 Query: 216 LTQKF 220 + + Sbjct: 236 TQRAY 240 >gi|315301942|ref|ZP_07872943.1| flagellar hook protein FlgE [Listeria ivanovii FSL F6-596] gi|313629684|gb|EFR97816.1| flagellar hook protein FlgE [Listeria ivanovii FSL F6-596] Length = 342 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 17/97 (17%) Query: 70 VGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGKY------ 121 GS STG D AL+G +F G I+ TRDG F V+D+ L + GKY Sbjct: 12 AGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYAT 71 Query: 122 ----PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 VL PIQIP I GE ++ G + Sbjct: 72 DKNGNVLSGNLQPIQIPLNSAI-----PGEATKTGSL 103 >gi|224370779|ref|YP_002604943.1| FlgE [Desulfobacterium autotrophicum HRM2] gi|223693496|gb|ACN16779.1| FlgE [Desulfobacterium autotrophicum HRM2] Length = 901 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 5/121 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKIS 57 + +S G + + + V +N+SN +TVGF+ + F++ + A ++ DQ Sbjct: 3 LSSSLFTGTSGLTNMGNAMQVVGNNISNVNTVGFKKGRSTFADTLSQSVATQSGTDQVGR 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLV 115 ++ G S + GSF STG D ++ GD +F + + TR G F G LV Sbjct: 63 GMSIGAVDQSFDTGSFESTGNSTDLSIGGDGFFVVRQSNSENNFYTRAGNFHFDKSGQLV 122 Query: 116 S 116 + Sbjct: 123 N 123 >gi|42780864|ref|NP_978111.1| flagellar basal body rod protein FlgG [Bacillus cereus ATCC 10987] gi|42736784|gb|AAS40719.1| flagellar basal-body rod protein, putative [Bacillus cereus ATCC 10987] Length = 257 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 33/232 (14%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTINS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVD-- 164 D L ++SG + V+ + I+IP+ ++ V G E++Q IA + +VD Sbjct: 123 DRYLQTSSGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 + V+REN + + + DL T VK LE+SN + EM ++ Sbjct: 179 ANNRLVQRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|308273521|emb|CBX30123.1| hypothetical protein N47_D29320 [uncultured Desulfobacterium sp.] Length = 469 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 20/118 (16%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY-------- 65 AL ++ + DN++N +TVGF+ +V F +V + Q ++ A + Sbjct: 6 ALGNAMTVIGDNIANVNTVGFKESRVTFQDV-------LSQTVATTAGSAQVGRGTSLAD 58 Query: 66 --LSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSAS 118 S GSF ST + D A+ G +F + P TR G F+ DG+ V+ S Sbjct: 59 ISSSFSQGSFESTDSSTDLAIGGAGFFMVRDPGTSNNDYYTRAGEFRFDKDGNFVNPS 116 >gi|152965624|ref|YP_001361408.1| hypothetical protein Krad_1658 [Kineococcus radiotolerans SRS30216] gi|151360141|gb|ABS03144.1| protein of unknown function DUF1078 domain protein [Kineococcus radiotolerans SRS30216] Length = 462 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 12/126 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-KNDIDQKISFVASGKEYL 66 G++ + + + V +N++N +T GF++ V F++ + + K + + + Sbjct: 8 GVSGLRSHQTMMDVVGNNIANVNTAGFKSSSVVFADTLSQLTKAAGAPTDAAAGTNPAQV 67 Query: 67 SKEV-----------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 V GS +TG D L+GD FA++ G +R+G F + +GS+V Sbjct: 68 GLGVRVNAITQNMTQGSAQATGKSTDLMLQGDGMFAIQQGDGTFYSRNGSFTLDANGSVV 127 Query: 116 SASGKY 121 + G Y Sbjct: 128 TNDGGY 133 >gi|294084418|ref|YP_003551176.1| hypothetical protein SAR116_0849 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663991|gb|ADE39092.1| hypothetical protein SAR116_0849 [Candidatus Puniceispirillum marinum IMCC1322] Length = 1575 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 26/153 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 SF L +S ++N++N T GF+ +V+F ++ + + S + SG Sbjct: 2 SFYTALTGLNGSSADISATSNNIANVGTTGFKRSRVEFGDIFA--TSPLQNSSSSLGSGA 59 Query: 63 -----KEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSL 114 K+ ++ G+ S+ LD A+ G +FAL+ + + TR+G V +D + Sbjct: 60 ILKGVKQQFTQ--GNIASSLNALDLAISGQGFFALKPSLTSAQTVYTRNGSLNVDNDRYV 117 Query: 115 VSASGK----YPVLD---------MASVPIQIP 134 V ++G+ YPV + ++VP+Q+P Sbjct: 118 VDSAGQYLLTYPVNNDGSVTAKDLQSAVPLQLP 150 >gi|295400718|ref|ZP_06810695.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977299|gb|EFG52900.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] Length = 285 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 37/197 (18%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVASGKEY------- 65 L+Q+L +++N++N++T GF+ + F E++ ++ D+ +G Y Sbjct: 17 LQQQLDVISNNIANSNTAGFKRRETSFGELLAQQFANLPQDEAPRLTPNGLRYGVGARLA 76 Query: 66 ---LSKEVGSFISTGTELDFALEGDAWF---ALESPRG---IILTRDGRFKVTDDGS--- 113 + + G+ + T LD AL + F ++ G I TR G F +T Sbjct: 77 ETNIVLKQGAIMQTDRPLDVALTKEGQFFRVLIQGENGTQEIGYTRAGAFYLTPSAGNQN 136 Query: 114 ---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 LV++ G PVLD + PI +P N + EIS G + AT + + Sbjct: 137 VLMLVTSDGN-PVLDENNAPIWLP------NGYKDIEISDNGTITATAPDGRI------M 183 Query: 171 RRENSGISPNIPPTPLE 187 RR N G++ + P L+ Sbjct: 184 RRVNIGVTSILRPQLLQ 200 >gi|251789168|ref|YP_003003889.1| flagellar hook protein FlgE [Dickeya zeae Ech1591] gi|247537789|gb|ACT06410.1| flagellar basal body FlaE domain protein [Dickeya zeae Ech1591] Length = 405 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 62/117 (52%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ TVGF+ + F+++ + +++ V + Sbjct: 2 SFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTRVASVL--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ + GS ST LD A+ G ++ L + G ++ +R+G+F + ++V+A G Sbjct: 60 DFTN---GSINSTSRALDVAINGSGFYRLLNGNGSVVYSRNGQFTLDSSRNIVNAQG 113 >gi|77918787|ref|YP_356602.1| flagellar biosynthesis, hook protein [Pelobacter carbinolicus DSM 2380] gi|77544870|gb|ABA88432.1| flagellar biosynthesis, hook protein [Pelobacter carbinolicus DSM 2380] Length = 413 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE----VGSFI 74 +S + +N++NT+TVGF++ + FS+++ + N S V G + + G+F Sbjct: 21 MSVIGNNIANTNTVGFKSSRTVFSDLLASSVNG-SGGASQVGRGTGLSTVDNLFSQGTFE 79 Query: 75 STGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSASG 119 +T ++ D A+EG+ F + E + TR G F +G L +A G Sbjct: 80 TTESQTDLAIEGEGLFVVREEGAESLYYTRAGSFSFDGEGFLTNAEG 126 >gi|313610124|gb|EFR85444.1| flagellar hook protein FlgE [Listeria monocytogenes FSL F2-208] Length = 129 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 17/97 (17%) Query: 70 VGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGKY------ 121 GS +TG D AL+G +F G I+ TRDG F V+D+ L + GKY Sbjct: 32 AGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYAT 91 Query: 122 ----PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 VL+ PIQIP I GE ++ G + Sbjct: 92 DKNGNVLNGNLQPIQIPLNSAI-----PGEATKNGSL 123 >gi|258404710|ref|YP_003197452.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] gi|257796937|gb|ACV67874.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] Length = 433 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 +Q + G++A A + ++ + +N++N++T F+ + FS+++ A S V Sbjct: 3 LQGALYTGVSALGATGEAMNVIGNNLANSNTTAFKASRTLFSDLL-ASDVSSSSGTSQVG 61 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSL 114 +G S + G F T + D A+EG+ +F + P TR G F D+G L Sbjct: 62 TGVGLASVDTVFSQGGFNPTESSTDLAIEGEGFFKVSDPNTGADAYTRAGGFNFNDEGFL 121 Query: 115 VSASG 119 V+ G Sbjct: 122 VNPQG 126 >gi|213616339|ref|ZP_03372165.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 187 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIP 140 >gi|150021173|ref|YP_001306527.1| hypothetical protein Tmel_1293 [Thermosipho melanesiensis BI429] gi|149793694|gb|ABR31142.1| protein of unknown function DUF1078 domain protein [Thermosipho melanesiensis BI429] Length = 705 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 17/123 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK----FSEVVGAIKNDID-------QKI 56 G+ +Q + V +N++N T+GF+ +V FS+V+ K + ++I Sbjct: 8 GVTGLQGFQQAIDVVGNNIANVSTIGFKASRVTYATTFSQVLELSKRATELTGGTNPKQI 67 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 + VAS + +S+ GSF +TG + D A+ GD +F L G TR G F + +G Sbjct: 68 GYGVKVASIDKIMSQ--GSFQNTGKKTDLAIRGDGFFILRDGVGKTYYTRAGNFDLDVNG 125 Query: 113 SLV 115 +++ Sbjct: 126 TII 128 >gi|224825165|ref|ZP_03698271.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002] gi|224602836|gb|EEG09013.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002] Length = 246 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 31/231 (13%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTE 79 +T + N++N T G++ +V F + + D ++V GS TG + Sbjct: 20 ATTSQNLANVHTNGYKADQVSFRAL--PVVGDGAPTRTYVVDNTIGHDLSQGSLQQTGND 77 Query: 80 LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE 138 DFAL +F +++ G +RDG F +G L + SG P+L PI +P Sbjct: 78 TDFALGTPGFFTVQTADGREAYSRDGGFVADPNGMLRTRSG-LPILGDGG-PITVPTGSS 135 Query: 139 IFNVGEKG--------------EISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 + +G G +I+ + K++ G +V + + R N+G + T Sbjct: 136 VV-IGPDGTVVTTPTSGADRTPQIAGQLKLV-NPGERAVYKGEDGLFRLNAGGNA----T 189 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DENEK 232 +D V V G LE SN N++ + QMI ++F+ L+ D+NE+ Sbjct: 190 ASDD---VKVVSGALEGSNVNAVESLVQMISHARQFDLNVKLMQTSDQNEQ 237 >gi|323700159|ref|ZP_08112071.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323460091|gb|EGB15956.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 558 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVASGKE 64 G++ +R++ + +N++N +T GF+ ++F ++ A N + Q V Sbjct: 10 GISGLTVHSERMTVIGNNLANVNTTGFKGAMMQFEDLASADFATVNGVGQVGRGVRVSTI 69 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASG 119 Y G+F ++ D A+ GD F + SP G TR G F+ DG LV G Sbjct: 70 YSDWGQGAFETSTEATDMAISGDGLFVV-SPLGEDEKYYTRAGNFRFDSDGYLVDPHG 126 >gi|317013400|gb|ADU84008.1| flagellar basal body rod protein FlgG [Helicobacter pylori Lithuania75] Length = 262 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 LA + + T ++N++N +T GF+ + F+++ G ++ + G Sbjct: 13 LAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + S G+ LD A+ G +F ++ P G TR G FK+ + G+LV++ Sbjct: 73 RPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G Y ++ I +P+ N+G G +S Sbjct: 133 G-YLLIPQ----ITLPEDTTQVNIGVDGTVS 158 >gi|297617147|ref|YP_003702306.1| fagellar hook-basal body protein [Syntrophothermus lipocalidus DSM 12680] gi|297144984|gb|ADI01741.1| fagellar hook-basal body protein [Syntrophothermus lipocalidus DSM 12680] Length = 487 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 27/181 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----------VGAIK 49 M S G++ + R+ + +N++N +TVG++ + F + GA Sbjct: 1 MMRSMYAGVSGLRTHQLRMDVIGNNIANVNTVGYKKSRAIFKDAFYQAIRGGSAPTGARG 60 Query: 50 NDIDQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 Q I G + S +V GS +TG D A++G+ +F LES TR G Sbjct: 61 GTNPQAIGL---GVQLSSVDVIATPGSAQTTGKNTDLAIDGNGYFILESGGERYYTRAGA 117 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F G+ V++ G + V +P KD+ N + S K K+ T GL +D+ Sbjct: 118 FDFDVLGNYVASGGLH-------VMGYMPSKDDSGNW--ITDSSGKRKIDITTGLVPIDI 168 Query: 166 S 166 S Sbjct: 169 S 169 >gi|288554367|ref|YP_003426302.1| flagellar hook-basal body protein [Bacillus pseudofirmus OF4] gi|288545527|gb|ADC49410.1| flagellar hook-basal body protein [Bacillus pseudofirmus OF4] Length = 281 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 26/159 (16%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISF---------VASG-- 62 L++++ T++ NM+N++T GF+ + FS+++ + N+ D + V +G Sbjct: 15 LQRKMDTLSHNMANSNTTGFKRREATFSDLLFQQVNNNTDTRYETGRLTPNGIRVGAGAK 74 Query: 63 --KEYLSKEVGSFISTGTELDFALEGDAWF----ALESPRGI-ILTRDGRFKVTDDG--- 112 + L E G+ +T LDFA+ F ++E+ + + LTR+G F + +D Sbjct: 75 IAQTALRMEQGAIQNTDRRLDFAITQPNHFFEVQSVENGQAVNRLTREGAFYLNEDPDNP 134 Query: 113 ---SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 ++V+A+G+Y +LD +P + GE+ Sbjct: 135 GQLTIVNANGEY-LLDGGGNRFTLPMNFSDIQLSPTGEL 172 >gi|238916755|ref|YP_002930272.1| flagellar hook protein FlgE [Eubacterium eligens ATCC 27750] gi|238872115|gb|ACR71825.1| flagellar hook protein FlgE [Eubacterium eligens ATCC 27750] Length = 464 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 103/281 (36%), Gaps = 80/281 (28%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY-------- 65 A + R+ + +N++N +TV F++ + FSEV + + ASG Sbjct: 37 AHQTRMDVIGNNIANVNTVAFKSQSMTFSEVF--------YQTTQTASGPNAESGKGGTN 88 Query: 66 -----LSKEVGSFIS----------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 L VGS + T D + G A+F + S TR G FKV + Sbjct: 89 AKQIGLGSSVGSISTSISTEGASERTDNAFDLKIGGSAFFIVNSAGNTFFTRAGNFKVDE 148 Query: 111 DGSLVSASGK-----------YPVLDMAS--------VPIQIPQKDEIFNVGEKGEISQK 151 G+LV+++G V D+ S PQ+ N S K Sbjct: 149 SGALVTSAGANVMGWQVDETGKAVKDVVSKLYVNSPEFAYTSPQRTSAVNFTGNINASSK 208 Query: 152 GKVIATMGLY---------SVDMSQGFVRRENS-------GISPNIPPTPLE-DLSG--- 191 + T+ Y +V++ V+ +N+ G+S N PT L SG Sbjct: 209 DTITTTLNFYDSLGNSFQATVNLDYAGVQGDNTQYTMTCVGVSKNGNPTDLTFTASGPLS 268 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G + SNAN I LT F++ TL NE Sbjct: 269 FNTLTGLADQSNAN--------IQLT--FSNDATLAQTNEN 299 >gi|331005445|ref|ZP_08328824.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC1989] gi|330420721|gb|EGG95008.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC1989] Length = 400 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--DIDQKISFVASGK------E 64 L + LSTV++N++N +T GF+ + F ++ + ++D + S +G Sbjct: 14 LTFSKGLSTVSNNVANLNTPGFKRSDLLFRDLFYQFQQSGEMDGQTSAQQNGAGVTDAGT 73 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S G TG D A+ G+ +F L P + TR G+F+ DG L S S Sbjct: 74 ITSFAAGDIQQTGNSTDVAISGNGFFILREPDQQMYTRAGQFEFDSDGFLSSTS 127 >gi|261840277|gb|ACY00043.1| flagellar basal body rod protein FlgG [Helicobacter pylori 52] Length = 262 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 LA + + T ++N++N +T GF+ + F+++ G ++ + G Sbjct: 13 LAQQTHIDTTSNNIANVNTTGFKKSRTDFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + S G+ LD A+ G +F ++ P G TR G FK+ + G+LV++ Sbjct: 73 RPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G Y ++ I +P+ N+G G +S Sbjct: 133 G-YLLIPQ----ITLPEDTTQVNIGVDGTVS 158 >gi|168234103|ref|ZP_02659161.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468943|ref|ZP_03074927.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455307|gb|EDX44146.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331935|gb|EDZ18699.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 425 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIP 134 A+G P + + PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIP 140 >gi|86146155|ref|ZP_01064481.1| flagellar hook protein [Vibrio sp. MED222] gi|218708804|ref|YP_002416425.1| flagellar hook protein FlgE [Vibrio splendidus LGP32] gi|85836102|gb|EAQ54234.1| flagellar hook protein [Vibrio sp. MED222] gi|218321823|emb|CAV17792.1| Flagellar hook protein flgE [Vibrio splendidus LGP32] Length = 434 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 23/148 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + L+ A + L+T ++N++N +T GF+ + +F +V + + G Sbjct: 4 VSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSS---SLFTNAKTTPGGGAQA 60 Query: 67 SK-----EVGSFISTGTELDFALEGDAWFALESPRGII----LTRDGRFKVTDDGSLVSA 117 S+ GS I T +D + G +FA+ R + LTR+G F + D +V+A Sbjct: 61 SQVAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDRMVPEINELTRNGAFHLNKDNYMVTA 120 Query: 118 SGKY-----------PVLDMASVPIQIP 134 + ++ VL A P+ IP Sbjct: 121 NDEFLLGYDVDPNSGEVLSYAPKPLDIP 148 >gi|77464881|ref|YP_354385.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1] gi|126463723|ref|YP_001044837.1| hypothetical protein Rsph17029_2963 [Rhodobacter sphaeroides ATCC 17029] gi|221640802|ref|YP_002527064.1| hypothetical protein RSKD131_2703 [Rhodobacter sphaeroides KD131] gi|332559780|ref|ZP_08414102.1| FlgE2 [Rhodobacter sphaeroides WS8N] gi|77389299|gb|ABA80484.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1] gi|126105387|gb|ABN78065.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221161583|gb|ACM02563.1| Hypothetical Protein RSKD131_2703 [Rhodobacter sphaeroides KD131] gi|332277492|gb|EGJ22807.1| FlgE2 [Rhodobacter sphaeroides WS8N] Length = 465 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 34/154 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A +L+T+ADN++N+ T G++ F +V I+ A Sbjct: 3 ISSSLNAGVAGLNANATKLATIADNIANSGTYGYKRADADFESMV----------ITQSA 52 Query: 61 SGKEYLS-----------KEVGSFISTGTELDFALEGDAWFAL--ESPRG-------IIL 100 +G Y + +E G+ +ST + LD A+ G + E+ G +++ Sbjct: 53 NGGSYAAGGVRANTIRRVEEWGAPVSTASALDIAISGRGMLPVIRETSLGASSGNEALLM 112 Query: 101 TRDGRFKVTDDGSLVSASG----KYPVLDMASVP 130 TR G F G L + +G +P ++P Sbjct: 113 TRTGSFATDPSGVLKTDTGLVLLGWPATADGTIP 146 >gi|260772276|ref|ZP_05881192.1| flagellar basal-body rod protein FlgG [Vibrio metschnikovii CIP 69.14] gi|260611415|gb|EEX36618.1| flagellar basal-body rod protein FlgG [Vibrio metschnikovii CIP 69.14] Length = 189 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 22/179 (12%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ +T LD +EGD +F + P G I +R+G+F + +G++V++ Y + Sbjct: 11 GNVQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLNAEGAIVTSGAGY----LVQP 66 Query: 130 PIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 I +P+ VG GE+S Q+ +V+ + + G E G + +P Sbjct: 67 EIVVPEDAISITVGNDGEVSVRLRGQQENQVLGQITIVDFINPGGL---EPVGQNLYLPT 123 Query: 184 ----TPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 P E + G+ +++ LE SN N E+ MI + + + +I ++ M Sbjct: 124 GASGDPQEGVPGLDGLGNIRQSMLESSNVNVTEELVNMIEAQRVYEMNSKVISSVDQMM 182 >gi|15646192|ref|NP_208376.1| flagellar basal body rod protein FlgG [Helicobacter pylori 26695] gi|188528376|ref|YP_001911063.1| flagellar basal body rod protein FlgG [Helicobacter pylori Shi470] gi|217033804|ref|ZP_03439229.1| hypothetical protein HP9810_877g8 [Helicobacter pylori 98-10] gi|308183740|ref|YP_003927867.1| flagellar basal body rod protein FlgG [Helicobacter pylori PeCan4] gi|2314768|gb|AAD08623.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori 26695] gi|188144616|gb|ACD49033.1| flagellar basal body rod protein FlgG [Helicobacter pylori Shi470] gi|216943702|gb|EEC23145.1| hypothetical protein HP9810_877g8 [Helicobacter pylori 98-10] gi|261838871|gb|ACX98637.1| flagellar basal-body rod protein [Helicobacter pylori 51] gi|297380761|gb|ADI35648.1| flagellar basal-body rod protein FlgG [Helicobacter pylori v225d] gi|308062867|gb|ADO04755.1| flagellar basal body rod protein FlgG [Helicobacter pylori Cuz20] gi|308064367|gb|ADO06254.1| flagellar basal body rod protein FlgG [Helicobacter pylori Sat464] gi|308065925|gb|ADO07817.1| flagellar basal body rod protein FlgG [Helicobacter pylori PeCan4] gi|315585990|gb|ADU40371.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 35A] gi|317178306|dbj|BAJ56095.1| flagellar basal body rod protein FlgG [Helicobacter pylori F16] gi|317179787|dbj|BAJ57575.1| flagellar basal body rod protein FlgG [Helicobacter pylori F30] gi|317181286|dbj|BAJ59072.1| flagellar basal body rod protein FlgG [Helicobacter pylori F32] gi|317182809|dbj|BAJ60593.1| flagellar basal body rod protein FlgG [Helicobacter pylori F57] gi|332674396|gb|AEE71213.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 83] Length = 262 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 LA + + T ++N++N +T GF+ + F+++ G ++ + G Sbjct: 13 LAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + S G+ LD A+ G +F ++ P G TR G FK+ + G+LV++ Sbjct: 73 RPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G Y ++ I +P+ N+G G +S Sbjct: 133 G-YLLIPQ----ITLPEDTTQVNIGVDGTVS 158 >gi|218288303|ref|ZP_03492602.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241662|gb|EED08835.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 301 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 66/300 (22%), Positives = 116/300 (38%), Gaps = 61/300 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------- 45 M S N ++ A + L V +N++N +TVGF+ V+F++++ Sbjct: 1 MLRSMNSAISGMQAFQTDLDVVGNNIANVETVGFKQSDVQFADLLSQTMSLGTAGTSPST 60 Query: 46 ---GAIKNDIDQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI 98 GA V G + + ++ G +TG + A++G+ +F + Sbjct: 61 GGSGATTGIGGTNPEQVGLGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTDGTST 120 Query: 99 ILTRDGRFKVTDDGSLVSASG----------------------KYPVLDMASVPIQIPQK 136 LTR G F V G+LV +G + V +A V + Sbjct: 121 YLTRAGNFSVDSAGNLVLPNGVIAEGYSSSSKPSSASTTQPTTEINVYQLAGVTLGSGNT 180 Query: 137 DEIFNVGEKGEI--------SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP----- 183 ++G G I + KVI + L V QG V ++ S + P Sbjct: 181 VSNVSIGSDGSITATITNGTTTTTKVIGYLALAQVPNPQGLVSVGDNLFSASSPAAGQPT 240 Query: 184 --TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 TP + G T+ G LE SN + + +MI + + T +I + ++L+A+ N+ Sbjct: 241 YWTPGQGTYG-TLASGELEGSNVDLSQQFAEMIVAQNAYVANTHMIGT-DNAILQALVNM 298 >gi|170742325|ref|YP_001770980.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] gi|168196599|gb|ACA18546.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] Length = 263 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 55/243 (22%), Positives = 105/243 (43%), Gaps = 42/243 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISFV 59 G+AAQ E + +++N++N T G++ + F +++ A + +Q + + Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGYKRQQAHFQDLLYQNLRRAGTATSDQGNQLPAGL 66 Query: 60 ASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 A G + +S GT D A+ G+ F + P G TRDG F + G Sbjct: 67 ALGSGVKTTSTARVMSQGTLSSTEKTYDVAIRGEGLFQITMPDGRTAYTRDGSFDLDAQG 126 Query: 113 SLVSASGKYPVLDMASVP---------------IQIPQKDEIFNVGEKGEISQKGKVIAT 157 +VS G Y + +VP +P + N+G+ Q + + Sbjct: 127 QIVSRDG-YLLNPAITVPNNATAVTISASGLVQATLPGQTAPQNLGQI----QLARFVNK 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 +GL S+ F+ + SG P I P + G ++++ +LE++N N++ E+ +I Sbjct: 182 VGLESIG-DNLFIETQASG--PAIQGNPGTEGFG-SLQQSYLEEANVNAVTEISSLIAAQ 237 Query: 218 QKF 220 + + Sbjct: 238 RAY 240 >gi|108563958|ref|YP_628274.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPAG1] gi|207092034|ref|ZP_03239821.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPKX_438_AG0C1] gi|208435465|ref|YP_002267131.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|210135763|ref|YP_002302202.1| flagellar basal body rod protein FlgG [Helicobacter pylori P12] gi|217031740|ref|ZP_03437244.1| hypothetical protein HPB128_155g53 [Helicobacter pylori B128] gi|254780116|ref|YP_003058223.1| flagellar basal body rod protein FlgG [Helicobacter pylori B38] gi|298737122|ref|YP_003729652.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] gi|107837731|gb|ABF85600.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1] gi|208433394|gb|ACI28265.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|210133731|gb|ACJ08722.1| flagellar basal-body rod protein [Helicobacter pylori P12] gi|216946587|gb|EEC25187.1| hypothetical protein HPB128_155g53 [Helicobacter pylori B128] gi|254002029|emb|CAX30288.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Helicobacter pylori B38] gi|298356316|emb|CBI67188.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] gi|307638271|gb|ADN80721.1| Flagellar basal-body rod protein [Helicobacter pylori 908] gi|317010275|gb|ADU80855.1| flagellar basal body rod protein FlgG [Helicobacter pylori India7] gi|317011821|gb|ADU85568.1| flagellar basal body rod protein FlgG [Helicobacter pylori SouthAfrica7] gi|325996863|gb|ADZ52268.1| Flagellar basal-body rod protein [Helicobacter pylori 2018] gi|325998456|gb|ADZ50664.1| Flagellar basal-body rod protein [Helicobacter pylori 2017] Length = 262 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 LA + + T ++N++N +T GF+ + F+++ G ++ + G Sbjct: 13 LAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + S G+ LD A+ G +F ++ P G TR G FK+ + G+LV++ Sbjct: 73 RPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G Y ++ I +P+ N+G G +S Sbjct: 133 G-YLLIPQ----ITLPEDTTQVNIGVDGTVS 158 >gi|320537132|ref|ZP_08037104.1| flagellar basal-body rod protein FlgG [Treponema phagedenis F0421] gi|320146005|gb|EFW37649.1| flagellar basal-body rod protein FlgG [Treponema phagedenis F0421] Length = 264 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 48/240 (20%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISFVASGKEYLSK----- 68 + TVA+N++N +T GF+ + +F +++ A + I+ V + SK Sbjct: 19 IDTVANNLANVNTSGFKKQRAEFEDLLYQTVKSAGTPATEDTITPVGIQMGHGSKLAATQ 78 Query: 69 ---EVGSFISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 E G+ TG D A+ G+ +F L+ TRDG FK+ D LV+++G Sbjct: 79 RIFEQGALQHTGLTSDVAVAGEGFFRVLQYDGTYAYTRDGSFKIDADRQLVTSNG----- 133 Query: 125 DMASVP-IQIPQKDEIFNVGEKG-EISQKGKVIATMGLYS--VDMSQGFVRR--ENSGIS 178 + +P I P+ N E+ ISQ G+V +G +D+ Q + R N+G++ Sbjct: 134 -LRVLPEIIFPE-----NYVERSIAISQDGRVTVRVGEEDEPIDVGQIELYRFQNNAGLA 187 Query: 179 PN--------------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI--HLTQKFNS 222 IP P + G T + FLE SN +++ EM MI +FNS Sbjct: 188 AEGSNLFKQTPASGQAIPGRPGFNGFGKTEHK-FLEMSNVSTVSEMVNMIVAQRAYEFNS 246 >gi|332673746|gb|AEE70563.1| flagellar hook [Helicobacter pylori 83] Length = 605 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|260779346|ref|ZP_05888238.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC BAA-450] gi|260605510|gb|EEX31805.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC BAA-450] Length = 243 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 27/211 (12%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 ++N+SN DT GFR + S V ++ + V + + G + TG LD Sbjct: 23 SNNLSNADTAGFRADMERVSSV--QLQGSGFDGRTMVVTNSASTRFDEGDIVKTGRALDV 80 Query: 83 ALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ G+ + +++ G TR G KV G+L S +G + V+ P+ +P ++ Sbjct: 81 AVMGEGYLTVQTADGQEAYTRAGNIKVDPFGAL-SING-FAVIGEGG-PLVLPDYQKV-- 135 Query: 142 VGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 EIS++G++ + T+ L + +Q +++E+ + ++ P E Sbjct: 136 -----EISERGRISVVPPGGGAELEVGTLKLVKPETNQ--LQKESDSLLHSVDGNPFEVD 188 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + +E SN +++ E+ ++ LT+ F Sbjct: 189 QTVQLAPEHIEGSNVSAIDELLNVMSLTRNF 219 >gi|51246516|ref|YP_066400.1| flagellar hook protein (FlgE) [Desulfotalea psychrophila LSv54] gi|50877553|emb|CAG37393.1| related to flagellar hook protein (FlgE) [Desulfotalea psychrophila LSv54] Length = 566 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 13/112 (11%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------KNDIDQKISFVASGKEYLSKEV 70 Q ++ + +N++NT+T+ ++ + FS+++ + + + + + ++ Sbjct: 19 QAMTVIGNNLANTNTIAYKGSRTMFSDLLSSSVTGSGGTSQVGRGVGLSRVDNDF---SQ 75 Query: 71 GSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASG 119 G+F ST + LD A+EG+++F L SP + I +R G FK + G LV+ G Sbjct: 76 GTFESTSSGLDLAIEGNSFFLL-SPSNDQSIHYSRAGSFKFNEGGYLVNPGG 126 >gi|317009564|gb|ADU80144.1| flagellar hook protein FlgE [Helicobacter pylori India7] Length = 605 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G + FL D G+MI L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--AQDFFLNDK--------GEMIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|303249022|ref|ZP_07335267.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] gi|302489608|gb|EFL49548.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] Length = 519 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKISFVASGKE 64 G++ L+ ++ +N++NT T G+++ ++ F++++ + +D Q + V G Sbjct: 7 GVSGLLSYSTGIANTGNNLANTGTTGYKSSRLLFADMISEMAGGTSDGSQIGTGVQVGSV 66 Query: 65 YLSKEVGSFISTGTELDFALEGD-AWFALESP--RGIILTRDGRFKVTDDGSLVSASG 119 ++ GS IS +D A+ G+ +F ++ P TRDG F +G L + +G Sbjct: 67 SMTTSTGSPISASQSMDMAINGERGYFVVKKPGTDKTYYTRDGAFNFDVNGYLTTETG 124 >gi|172058672|ref|YP_001815132.1| hypothetical protein Exig_2667 [Exiguobacterium sibiricum 255-15] gi|171991193|gb|ACB62115.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sibiricum 255-15] Length = 260 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 32/235 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG-----------K 63 L+++L T N++N +T G++ +F+E++ ++N +Q Sbjct: 14 LQKQLDTTGHNLANANTNGYKRRDSQFNELL--VRNLNNQPAGLTPGSLTTPAGLRLGVG 71 Query: 64 EYLSKEV-----GSFISTGTELDFALEG-DAWFALESPRGII-LTRDGRFKVTDDGS--- 113 Y++ E G+F +TG +LD AL +F + G+ TRDG F+++ + Sbjct: 72 GYVANEATRFATGTFQNTGRKLDAALSNPHHFFGVIDADGVTKFTRDGNFELSPQANGQV 131 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGF 169 L++ V++ A+ PI P + + G I+ + +V+A +G+ + + G Sbjct: 132 LLTDDAGRSVINQANEPITFPDDATSIELNKDGNITGVLNGERRVLARIGVADIP-NHGE 190 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ--KFNS 222 + G+ ++ +G + G LE SN + EM + + + +FNS Sbjct: 191 LTDVGGGLY--TTAGQYQNATGNPLTVGTLETSNVDMATEMTNLTQIQRAYQFNS 243 >gi|317180242|dbj|BAJ58028.1| flagellar hook protein FlgE [Helicobacter pylori F32] Length = 605 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|254779511|ref|YP_003057617.1| flagellar hook protein FlgE [Helicobacter pylori B38] gi|254001423|emb|CAX29418.1| Flagellar hook protein FlgE [Helicobacter pylori B38] Length = 605 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|217034408|ref|ZP_03439822.1| hypothetical protein HP9810_884g13 [Helicobacter pylori 98-10] gi|216943139|gb|EEC22611.1| hypothetical protein HP9810_884g13 [Helicobacter pylori 98-10] Length = 605 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|149202208|ref|ZP_01879181.1| flagellar hook protein FlgE [Roseovarius sp. TM1035] gi|149144306|gb|EDM32337.1| flagellar hook protein FlgE [Roseovarius sp. TM1035] Length = 419 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ L+ A + +S ++N++N T+GF + +F+++ + + S + SG Sbjct: 2 SFHTALSGLNAAQTDISVTSNNIANVGTLGFHGSRAEFADIY--TTSPYSRPASQIGSGT 59 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTDDGSLV 115 E V GS +TG LD +L+G +F + ++ TR G F + +G + Sbjct: 60 EVSRIGVDFKQGSLTATGNVLDLSLQGPGFFQVRTGPDAGADAGYTRAGAFGMNREGFVT 119 Query: 116 SASGKY 121 +A+G + Sbjct: 120 NAAGHF 125 >gi|218528943|ref|YP_002419759.1| hypothetical protein Mchl_0913 [Methylobacterium chloromethanicum CM4] gi|218521246|gb|ACK81831.1| protein of unknown function DUF1078 domain protein [Methylobacterium chloromethanicum CM4] Length = 460 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 18/135 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFV 59 +QT+ + GL AQ LS ++ N++N+ T G++ I F +++ + D Q V Sbjct: 7 LQTAVS-GLKAQ---SFSLSNISGNIANSQTTGYKRIDTSFVDML--VDGDAKSQTAGSV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES-----------PRGIILTRDGRFKV 108 + E + G+ +STG + A++G +FA+ G + TR G F Sbjct: 61 GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120 Query: 109 TDDGSLVSASGKYPV 123 DG LV+ +G Y V Sbjct: 121 DKDGYLVNTAGAYLV 135 >gi|193069470|ref|ZP_03050424.1| flagellar hook protein FlgE [Escherichia coli E110019] gi|192957218|gb|EDV87667.1| flagellar hook protein FlgE [Escherichia coli E110019] gi|323174795|gb|EFZ60410.1| flagellar hook protein flgE [Escherichia coli LT-68] Length = 401 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF+T F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKTGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P I Sbjct: 127 TIQQGANPTNI 137 >gi|87306343|ref|ZP_01088490.1| flagellar hook basal body protein flgG [Blastopirellula marina DSM 3645] gi|87290522|gb|EAQ82409.1| flagellar hook basal body protein flgG [Blastopirellula marina DSM 3645] Length = 266 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 100/246 (40%), Gaps = 30/246 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKIS 57 +QT + Q L+ +L +++N++N +T F+ ++ F ++ + +D + Sbjct: 3 VQTLYTAATGMQ-TLQTKLDVISNNLANVNTTAFKKDRINFEDLFYDNRVLPGKLDGSSN 61 Query: 58 FVASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 +G + G+F T LD+ + G +F + P G TR G F Sbjct: 62 PTPTGTHIGMGVRVQSTQTDYQQGAFRETDRSLDWTIRGKGFFQVLDPTGQTYYTRAGNF 121 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G +V+ S V I IPQ V G +S Q + + + L Sbjct: 122 SINANGEIVTGSAG--VGRPLEPSITIPQDTTGIEVSSDGIVSVQRPGQQTLEEVGQIQL 179 Query: 161 YSVDMSQGFVR------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + +G ++ E + S I P D G +V++GFLE SN + E+ +I Sbjct: 180 ANFINPEGLLKLGDNLYSETNASSAAIVGNPNIDGFG-SVEKGFLEASNVEPVQELVDLI 238 Query: 215 HLTQKF 220 + F Sbjct: 239 TTQRAF 244 >gi|600725|gb|AAA92803.1| flagellar hook FlgE [Helicobacter pylori] Length = 718 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIINPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|297380105|gb|ADI34992.1| flagellar hook protein FlgE [Helicobacter pylori v225d] gi|308062226|gb|ADO04114.1| flagellar hook protein FlgE [Helicobacter pylori Cuz20] gi|308063738|gb|ADO05625.1| flagellar hook protein FlgE [Helicobacter pylori Sat464] gi|317178740|dbj|BAJ56528.1| flagellar hook protein FlgE [Helicobacter pylori F30] Length = 605 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|183220929|ref|YP_001838925.1| flagellar basal-body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911025|ref|YP_001962580.1| endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775701|gb|ABZ94002.1| Endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779351|gb|ABZ97649.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 286 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 54/264 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV-------GAIKNDIDQ--- 54 G ++ + R+ VA+N++N D GF+ T+ F E++ G K + Sbjct: 8 GANGMISQQVRMDVVANNLANVDKTGFKKDTTVFKTFPEMLLHRYSEDGIGKTPMGSFDT 67 Query: 55 -----KISFVASGKE-YLSKEVGSFISTGTELDF------ALEGDAWFALESPRGIILTR 102 K+ F A E Y E G+ T D +E A+F + + +G LTR Sbjct: 68 SPVVGKLGFGAEVNEVYTRFEQGAVKKTDNIFDLMVQDQPGMEKPAFFTVLTNQGERLTR 127 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------- 153 G F + +G +V+ G +P+L PIQ+ Q + F V E GEI K Sbjct: 128 SGSFVLDKNGFVVTPQG-FPLLGEKG-PIQVNQGN--FLVKENGEIYINAKLGTAPKDGT 183 Query: 154 -----------VIATMGLYSVDMSQGFVRRENSGISPNIP----PTPLEDLSGVTVKRGF 198 ++ + + +V+ + + +S + P PT +L V +G+ Sbjct: 184 NFSENRFEEPVLLDKLKIRTVENPRHLDKVGDS-FYADTPESGEPTAFPELLAPQVLQGY 242 Query: 199 LEDSNANSMYEMGQMIHLTQKFNS 222 LE SN + + EM MI + + + + Sbjct: 243 LEASNVSVVTEMVDMIEVNRAYEA 266 >gi|163850383|ref|YP_001638426.1| hypothetical protein Mext_0950 [Methylobacterium extorquens PA1] gi|163661988|gb|ABY29355.1| protein of unknown function DUF1078 domain protein [Methylobacterium extorquens PA1] Length = 460 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 18/135 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFV 59 +QT+ + GL AQ LS ++ N++N+ T G++ I F +++ + D Q V Sbjct: 7 LQTAVS-GLKAQ---SFSLSNISGNIANSQTTGYKRIDTSFVDML--VDGDAKSQTAGSV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES-----------PRGIILTRDGRFKV 108 + E + G+ +STG + A++G +FA+ G + TR G F Sbjct: 61 GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120 Query: 109 TDDGSLVSASGKYPV 123 DG LV+ +G Y V Sbjct: 121 DKDGYLVNTAGAYLV 135 >gi|240137459|ref|YP_002961930.1| putative Flagellar hook protein flgE [Methylobacterium extorquens AM1] gi|240007427|gb|ACS38653.1| putative Flagellar hook protein flgE [Methylobacterium extorquens AM1] Length = 460 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 18/135 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFV 59 +QT+ + GL AQ LS ++ N++N+ T G++ I F +++ + D Q V Sbjct: 7 LQTAVS-GLKAQ---SFSLSNISGNIANSQTTGYKRIDTSFVDML--VDGDAKSQTAGSV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES-----------PRGIILTRDGRFKV 108 + E + G+ +STG + A++G +FA+ G + TR G F Sbjct: 61 GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120 Query: 109 TDDGSLVSASGKYPV 123 DG LV+ +G Y V Sbjct: 121 DKDGYLVNTAGAYLV 135 >gi|157371207|ref|YP_001479196.1| flagellar hook protein FlgE [Serratia proteamaculans 568] gi|157322971|gb|ABV42068.1| flagellar basal body FlaE domain protein [Serratia proteamaculans 568] Length = 407 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 67/135 (49%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ V F+++ + + K++ + + + G+ Sbjct: 12 AAATNLDVIGNNIANSATSGFKSGTVSFADMFAGSQVGLGVKVAGITQ-----NFKGGTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 T LD A+ G+ +F ++ G + +R+G+FK+ ++ +L + A+G P Sbjct: 67 TGTSRALDVAISGNGFFRMQDQDGGVFYSRNGQFKLDENRNLTNMQGLQLTGYPAAGTPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + VP+ IP+ Sbjct: 127 TIQQGANPVPLSIPE 141 >gi|325289233|ref|YP_004265414.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964634|gb|ADY55413.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 447 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 16/122 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK----- 68 A ++++ + +N++N +TV ++ +V FS+++ + S G + Sbjct: 14 AHQKKMDVIGNNIANVNTVAYKASRVTFSDILSQTLSSATGADSTSGRGGSNAKQIGLGV 73 Query: 69 ---------EVGSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLVSA 117 GS STG D +++GD +F ++ S + TR G F + D G+LV++ Sbjct: 74 GIGSIDTLMTAGSTESTGNSTDLSIDGDGFFIVKNGSTGTYMFTRAGNFSIDDSGNLVTS 133 Query: 118 SG 119 G Sbjct: 134 DG 135 >gi|152975186|ref|YP_001374703.1| flagellar basal body rod protein FlgG [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023938|gb|ABS21708.1| flagellar basal body rod protein [Bacillus cytotoxicus NVH 391-98] Length = 257 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 111/256 (43%), Gaps = 27/256 (10%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKNDIDQKIS----F 58 IG + Q ++ A+N++N T GF+ T KV S+ + + + Sbjct: 6 IGSMGMMNYIQHINVHANNVANAQTPGFKAENLTSKVFDSQNTYRLGDGPSTSVGTTDYA 65 Query: 59 VASGKEYLSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTDDGS 113 V +++ GS T DF L+ G A F + S G LTRDG+F + +D Sbjct: 66 VVPAATHVNLIQGSVQITNRPTDFYLDDGTSGTASFFVTSKGGETFLTRDGQFTINEDRY 125 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQGF 169 L ++SG Y VL I+IP+ ++ V E G +SQ + + +++ Sbjct: 126 LQTSSGAY-VLGENHERIRIPEGTKV-KVQEDGMLYDAVSQNHIARLQTKMVNTEVNARL 183 Query: 170 VRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI---HLTQKFNSIT 224 V+REN + + + DL T V+ LE+SN + EM ++ + Q I Sbjct: 184 VQRENKSFT--LAEGDIADLPNGTGAVRNYMLENSNVDMTKEMADIMTNQKMVQASQRIM 241 Query: 225 TLIDE-NEKSMLEAIR 239 T D+ EK E +R Sbjct: 242 TSFDKIYEKEANEILR 257 >gi|317011083|gb|ADU84830.1| flagellar hook protein FlgE [Helicobacter pylori SouthAfrica7] Length = 718 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|311694361|gb|ADP97234.1| flagellar hook protein FlgE [marine bacterium HP15] Length = 632 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 +FN GL+ A L +N++N TVGF+ K +F ++ + A N I + Sbjct: 2 AFNTGLSGLRAASVDLDVTGNNIANASTVGFKGSKAQFGDLYASGFLSAGTNPIGDGVR- 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 V K+ + SF G LD A+ GD +F L + I +R G+F + +G Sbjct: 61 VQDVKQSFGQGNISFTDNG--LDMAIAGDGFFILNNGGEIRYSRAGQFGIDKEG 112 >gi|108563315|ref|YP_627631.1| flagellar hook protein FlgE [Helicobacter pylori HPAG1] gi|107837088|gb|ABF84957.1| flagellar hook protein [Helicobacter pylori HPAG1] Length = 605 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|317177302|dbj|BAJ55091.1| flagellar hook protein FlgE [Helicobacter pylori F16] Length = 718 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|297380070|gb|ADI34957.1| flagellar hook protein FlgE [Helicobacter pylori v225d] gi|315586465|gb|ADU40846.1| flagellar hook protein FlgE [Helicobacter pylori 35A] gi|317182178|dbj|BAJ59962.1| flagellar hook protein FlgE [Helicobacter pylori F57] Length = 718 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|220924578|ref|YP_002499880.1| flagellar basal-body rod protein FlgG [Methylobacterium nodulans ORS 2060] gi|219949185|gb|ACL59577.1| flagellar basal-body rod protein FlgG [Methylobacterium nodulans ORS 2060] Length = 263 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 40/242 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKISFV 59 G+AAQ E + +++N++N T G++ + F +++ A + +Q + + Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGYKRQQAHFQDLLYQNLRRAGSATSDQGNQLPAGL 66 Query: 60 ASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFK----- 107 A G + +S GT D A+ G+ +F + P G TRDG F Sbjct: 67 ALGSGVKTTSTARVMSQGTLSSTEKTYDIAIRGEGFFQITLPDGRTAYTRDGSFDLDSQG 126 Query: 108 --VTDDGSLVSASGKYP-----VLDMASVPIQ--IPQKDEIFNVGEKGEISQKGKVIATM 158 VT DG L++ S P V AS +Q +P + N+G+ Q + + + Sbjct: 127 QIVTRDGYLINPSITVPNNATGVTISASGMVQATVPGQTAPQNLGQI----QLARFVNKV 182 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL S+ + F SG P I P + G +++ +LE++N N++ E+ +I + Sbjct: 183 GLESIGDNL-FTETLASG--PAITGNPGAEGFG-NLQQSYLEEANVNAVTEISSLIAAQR 238 Query: 219 KF 220 + Sbjct: 239 AY 240 >gi|308063336|gb|ADO05223.1| flagellar hook protein FlgE [Helicobacter pylori Sat464] Length = 718 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|283834453|ref|ZP_06354194.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] gi|291070000|gb|EFE08109.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] Length = 261 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 25/145 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-------SEVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 11 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGMQ 67 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G ++ ++ G I TRDG +V Sbjct: 68 FGSGVRIVGTQKTFTE---GNVETTDNTMNVAIMGQGFWQVQKANGDIAYTRDGNLQVNA 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQI 133 DG L +A G P +D+ + Q+ Sbjct: 125 DGVLTNAQGLPLQPEIDVPAGSTQV 149 >gi|254559637|ref|YP_003066732.1| flagellar hook protein flgE [Methylobacterium extorquens DM4] gi|254266915|emb|CAX22714.1| putative Flagellar hook protein flgE [Methylobacterium extorquens DM4] Length = 460 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 18/135 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFV 59 +QT+ + GL AQ LS ++ N++N+ T G++ I F +++ + D Q V Sbjct: 7 LQTAVS-GLKAQ---SFSLSNISGNIANSQTTGYKRIDTSFVDML--VDGDAKSQTAGSV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES-----------PRGIILTRDGRFKV 108 + E + G+ +STG + A++G +FA+ G + TR G F Sbjct: 61 GAFSELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAP 120 Query: 109 TDDGSLVSASGKYPV 123 DG LV+ +G Y V Sbjct: 121 DKDGYLVNTAGAYLV 135 >gi|208434779|ref|YP_002266445.1| flagellar hook protein [Helicobacter pylori G27] gi|208432708|gb|ACI27579.1| flagellar hook protein [Helicobacter pylori G27] Length = 718 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|317180632|dbj|BAJ58418.1| flagellar hook protein FlgE [Helicobacter pylori F32] Length = 718 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|207092210|ref|ZP_03239997.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1] Length = 605 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNTLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|261839317|gb|ACX99082.1| flagellar hook protein FlgE [Helicobacter pylori 52] gi|317178772|dbj|BAJ56560.1| flagellar hook protein FlgE [Helicobacter pylori F30] Length = 718 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|328948413|ref|YP_004365750.1| flagellar hook-basal body protein [Treponema succinifaciens DSM 2489] gi|328448737|gb|AEB14453.1| flagellar hook-basal body protein [Treponema succinifaciens DSM 2489] Length = 463 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 26/137 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N+SN +T GF+ + F ++ I Q+I+ A Sbjct: 1 MMRSLYAGVSGLQNHQTRMDVIGNNISNVNTYGFKKGRATFQDM-------ISQQINGAA 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 E + KEVG + +TG D A++G+ +F L++ + Sbjct: 54 RPTEEVGGVNPKEVGLGMSVATIDTIFTQGNLQTTGNTTDLAIQGNGFFVLKNGDETFYS 113 Query: 102 RDGRFKVTDDGSLVSAS 118 R G F +G+LV+ + Sbjct: 114 RAGVFGTDSNGTLVNPA 130 >gi|261837904|gb|ACX97670.1| flagellar hook protein [Helicobacter pylori 51] Length = 718 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITHNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|188527285|ref|YP_001909972.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|188143525|gb|ACD47942.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|308062194|gb|ADO04082.1| flagellar hook protein FlgE [Helicobacter pylori Cuz20] Length = 718 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|2494530|sp|Q56326|FLGE_TREPH RecName: Full=Flagellar hook protein flgE gi|439981|gb|AAA73467.1| flagellar hook polypeptide [Treponema phagedenis] Length = 463 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T GF+ +V F ++ I Q++S + Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDL-------ISQQLSGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 E + KEVG + +TG D A++G+ +F L+ T Sbjct: 54 RPNEEVGGVNPKEVGLGVMVASIDTVHTQGALQTTGINTDIAIQGNGFFILKDGEKSFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 G F V DG+LV+ Sbjct: 114 TAGAFGVDRDGTLVN 128 >gi|229029452|ref|ZP_04185535.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1271] gi|228731911|gb|EEL82810.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1271] Length = 257 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 29/230 (12%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKNDIDQKIS 57 IG + QR++ ++N++N T GF+ ++ + GA+ N I Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTN-IGSTDY 64 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDG 112 V +++ G+ T + DF L+ A +F LTRDG F + D Sbjct: 65 AVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGISSFFVTSKNDETFLTRDGSFTLNSDR 124 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQG 168 L ++SG + V+ + I+IP+ ++ V G E++Q IA + +VD Sbjct: 125 YLQTSSGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDTETN 180 Query: 169 --FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 V+REN + + + DL T VK LE+SN + EM ++ Sbjct: 181 ARLVQRENKSFA--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|157694039|ref|YP_001488501.1| flagellar hook-basal body protein [Bacillus pumilus SAFR-032] gi|194016453|ref|ZP_03055067.1| flagellar hook-basal body complex protein FlhP [Bacillus pumilus ATCC 7061] gi|157682797|gb|ABV63941.1| flagellar hook-basal body protein [Bacillus pumilus SAFR-032] gi|194011926|gb|EDW21494.1| flagellar hook-basal body complex protein FlhP [Bacillus pumilus ATCC 7061] Length = 272 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 22/132 (16%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK----------- 63 ++++L +++N++N++T G+R +FSE++ N +D+K + VA+ + Sbjct: 15 VQKQLDIISNNIANSETTGYRAKNTRFSELIRQQFNQVDEKNAQVANSRLTPDGLRLGTG 74 Query: 64 ----EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-----DDGS 113 ++ GS TG +LD A + + + G I TRDG + + Sbjct: 75 TMVNASINSLQGSIKETGRDLDVAFGAPSQYMQVNVGGNIRYTRDGSLYLQPGNNRNQVQ 134 Query: 114 LVSASGKYPVLD 125 LV++ G +P+LD Sbjct: 135 LVTSEG-HPILD 145 >gi|109947758|ref|YP_664986.1| flagellar hook protein FlgE [Helicobacter acinonychis str. Sheeba] gi|109714979|emb|CAJ99987.1| flagellar hook protein [Helicobacter acinonychis str. Sheeba] Length = 718 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|222824019|ref|YP_002575593.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] gi|222539241|gb|ACM64342.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] Length = 264 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 54/249 (21%), Positives = 107/249 (42%), Gaps = 48/249 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S + ++ + ++ ++N+SN +TVG++ + +F++++ G + Sbjct: 1 MLRSLYTAASGMVSQQTQIDVTSNNISNVNTVGYKKSRAEFADLMYQTMKYAGTSTSSTT 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGT-------ELDFALEG-DAWFALESPRGII-LTRDG 104 + S + G + S G+ LD A+ G + +F ++ P G I TR+G Sbjct: 61 KHPSGIEVGLGSRVTAISKIFSEGSLKQTSTAGLDMAIAGNNGFFQIQMPDGTIAYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----------QKGKV 154 +F +G++V++ G + +M IP+ NV G IS Q G++ Sbjct: 121 QFTKDAEGNIVNSDGYRLLPEMT-----IPEDATAINVASDGTISVMQPGNTAETQIGQI 175 Query: 155 -----IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNAN 205 I GL+++ +N + + P+ ++G +K GF+E SN Sbjct: 176 ELVNFINPAGLHALG--------DNLLVETDASGAPIAGIAGENGFSPIKHGFVELSNVQ 227 Query: 206 SMYEMGQMI 214 + EM +I Sbjct: 228 LVEEMTDLI 236 >gi|108563278|ref|YP_627594.1| flagellar hook protein FlgE [Helicobacter pylori HPAG1] gi|217033066|ref|ZP_03438533.1| hypothetical protein HPB128_148g6 [Helicobacter pylori B128] gi|254779163|ref|YP_003057268.1| flagellar hook protein FlgE [Helicobacter pylori B38] gi|298736574|ref|YP_003729100.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|107837051|gb|ABF84920.1| flagellar hook protein [Helicobacter pylori HPAG1] gi|216945210|gb|EEC23895.1| hypothetical protein HPB128_148g6 [Helicobacter pylori B128] gi|254001074|emb|CAX29021.1| Flagellar hook protein FlgE [Helicobacter pylori B38] gi|298355764|emb|CBI66636.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|317009123|gb|ADU79703.1| flagellar hook protein FlgE [Helicobacter pylori India7] gi|317012675|gb|ADU83283.1| flagellar hook protein FlgE [Helicobacter pylori Lithuania75] Length = 718 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|21672606|ref|NP_660673.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008454|sp|Q8K9K4|FLGG_BUCAP RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|21623237|gb|AAM67884.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 260 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 17/126 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISF--- 58 GL AQ + ++ +++N++N T GF+ + F +++ + ID + Sbjct: 11 GLDAQ---QINMNVISNNLANVSTNGFKRSRAVFEDLMYQTMRQAGTNSSIDTTLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + +G +S E G+ T + D A+ G +F ++ P G I TRDG F++ +G Sbjct: 68 LGTGVRPVSTEKIYSQGNLSKTDSSKDVAINGPGFFQVQLPDGNIAYTRDGSFQLDQNGQ 127 Query: 114 LVSASG 119 LV+ SG Sbjct: 128 LVTNSG 133 >gi|210135063|ref|YP_002301502.1| flagellar hook protein FlgE [Helicobacter pylori P12] gi|210133031|gb|ACJ08022.1| flagellar hook protein [Helicobacter pylori P12] Length = 718 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|15611871|ref|NP_223522.1| flagellar hook protein FlgE [Helicobacter pylori J99] gi|11386868|sp|Q9ZKY0|FLGE_HELPJ RecName: Full=Flagellar hook protein flgE gi|4155354|gb|AAD06366.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99] gi|307637557|gb|ADN80007.1| Flagellar hook protein [Helicobacter pylori 908] gi|325996148|gb|ADZ51553.1| Flagellar hook protein [Helicobacter pylori 2018] gi|325997744|gb|ADZ49952.1| Flagellar hook protein [Helicobacter pylori 2017] Length = 718 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|332673326|gb|AEE70143.1| flagellar hook protein FlgE [Helicobacter pylori 83] Length = 718 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|317014278|gb|ADU81714.1| flagellar hook protein FlgE [Helicobacter pylori Gambia94/24] Length = 718 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|148258440|ref|YP_001243025.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] gi|146410613|gb|ABQ39119.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] Length = 466 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 12/126 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 T+F+ G+ AQ ++ ++ N++NT T G++ + FS+++ + S VA Sbjct: 9 TAFS-GMKAQ---SYAMANISGNIANTQTPGYKYVDTSFSDLISSQTRKQAVAGSVVAEA 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSLV 115 + + + G+ +TGT + A+ G A+F+++ G + TR G F + DG L+ Sbjct: 65 R-FTNSVQGALRATGTSTNMAINGPAFFSVQQKTGDSKFSGVPLYTRRGDFTIDKDGYLM 123 Query: 116 SASGKY 121 + + Y Sbjct: 124 NGADLY 129 >gi|308184654|ref|YP_003928787.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] gi|308060574|gb|ADO02470.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] Length = 718 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|217034494|ref|ZP_03439905.1| hypothetical protein HP9810_873g10 [Helicobacter pylori 98-10] gi|216943035|gb|EEC22514.1| hypothetical protein HP9810_873g10 [Helicobacter pylori 98-10] Length = 718 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|207092742|ref|ZP_03240529.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1] Length = 646 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|308183024|ref|YP_003927151.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] gi|308065209|gb|ADO07101.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] Length = 718 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|288573021|ref|ZP_06391378.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568762|gb|EFC90319.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 875 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 15/132 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKND---- 51 M S G++ A ++RL V +N++N +TVGF+ V F +++ GA+ D Sbjct: 1 MLRSLLTGVSGAKAHQKRLDVVGNNIANVNTVGFKKSTVVFQDLLSQTERGAMAPDGNVG 60 Query: 52 -IDQK---ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 ++ K + +G E + + G+ TG D A++G+ ++ + + + TR G+F Sbjct: 61 GVNAKQVGLGVQVAGIETIHTQ-GTVSQTGNRTDMAIQGEGYYVVRNGAENLYTRAGQF- 118 Query: 108 VTDDGSLVSASG 119 V D S ++ SG Sbjct: 119 VLDSNSDLAMSG 130 >gi|15645489|ref|NP_207664.1| flagellar hook protein FlgE [Helicobacter pylori 26695] gi|2506418|sp|P50610|FLGE_HELPY RecName: Full=Flagellar hook protein flgE gi|2313997|gb|AAD07911.1| flagellar hook (flgE) [Helicobacter pylori 26695] Length = 718 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|75762829|ref|ZP_00742649.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900355|ref|ZP_04064584.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL 4222] gi|74489683|gb|EAO53079.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859242|gb|EEN03673.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL 4222] Length = 259 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 8 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 67 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 68 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L ++SG + V+ + I+IP+ ++ V G E++Q IA + +VD Sbjct: 125 DRYLQTSSGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDAE 180 Query: 167 QG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 V+REN + NI P + +G+ VK LE+SN + EM ++ Sbjct: 181 TNARLVQRENKSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 230 >gi|238916190|ref|YP_002929707.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] gi|238871550|gb|ACR71260.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] Length = 277 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 57/285 (20%), Positives = 115/285 (40%), Gaps = 54/285 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + ++ + + T+A+N++N +T+G++ + +F + + ++ K + Sbjct: 1 MMRSLWTAASGMMSQQTSVDTIANNLANVNTIGYKQEQTQFKSL---LYQNLQAKTTSAN 57 Query: 61 SGKEYLSKEV---------------GSFISTGTELDFALEGDAWFALESPR--GIILTRD 103 + + +V G+ +T + DFA++G+ +FA+ + TR+ Sbjct: 58 GDDKPVGAQVGLGSRVSAVTSIYTQGALNATDSLTDFAIDGNGFFAVRDTNTGDTVYTRN 117 Query: 104 GRF--KVTDDGSLVSASGKYPVLDMASVPIQIPQ-------KDEIFNVGEKG------EI 148 G F +G ++S S YPVL I + Q K + + G E Sbjct: 118 GHFTWATATEGVMLSTSEGYPVLSADGAEIVLGQDANGEDYKTNLITIDTDGNLLYPDES 177 Query: 149 SQKGKVIATMGLYSVDMSQGFVR--------RENSGISPNIPPTPLEDLSGV----TVKR 196 + + +GLY G + E SG+ N ED V ++++ Sbjct: 178 NNPAPIGIKIGLYQFSNPAGLDKLGSSYLGETEASGVPLN------EDYDEVGKKSSLRQ 231 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +LE SN EM +I + + + I ++ +M+E N+ Sbjct: 232 SYLEASNVQVATEMVNLITAQRAYELCSKAITTSD-TMMEQANNL 275 >gi|288574696|ref|ZP_06393053.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570437|gb|EFC91994.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 262 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 68/285 (23%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV----------GA 47 M G++A + + A+N++N DT GFR I F EV+ G Sbjct: 1 MHKGIYAGVSAMMVQQGVTDCAANNLANVDTAGFRARKPIAKSFPEVLMERVDPAKGQGE 60 Query: 48 I-----------KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESP 95 I ++Q +S + Y+S + G+ T + +D AL + + +F L+ Sbjct: 61 IPPWPWRSHPIGNASMNQVLS-----ETYMSTDEGNLQVTDSPMDVALTDEEGFFVLQDG 115 Query: 96 RG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKG 152 G +R G F V + G LV+ G V D + +VGE +S G Sbjct: 116 EGNQFYSRSGHFLVNEGGQLVNPDGYLLVGDGGPI-----------DVGEAAAVSFTDDG 164 Query: 153 KVIAT-MGLYSVDMSQGF--------------VRRENSGISPNIPPTPLEDLSGVTVKRG 197 +VIA + + +D+ GF E+SG P P+E + V V G Sbjct: 165 QVIADGIAVAQIDIV-GFESPTALRQMGKNLLAETEDSGA-----PAPVE-VPQVAV--G 215 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N + EM ++I + + + + I ++ + I ++A Sbjct: 216 VLERSNVNVVEEMVRLIEAQRAYEAASKGIQTSDDMTGQLITSLA 260 >gi|114765247|ref|ZP_01444379.1| putative flagellar hook protein [Pelagibaca bermudensis HTCC2601] gi|114542382|gb|EAU45410.1| putative flagellar hook protein [Roseovarius sp. HTCC2601] Length = 433 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 10/121 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASGKEYL 66 G++ +A + + ++ N++N DTVG+R FS++V + S VA+ + Sbjct: 10 GVSGLMANSKAVEKISYNIANADTVGYRR---SFSQMVTSGSTSASGSFSTGVATEVTHS 66 Query: 67 SKEVGSFISTGTELDFALEGDAWFALES------PRGIILTRDGRFKVTDDGSLVSASGK 120 + GSF+ T + + G +F + S G + TR G F+ +DG+LV+A+G Sbjct: 67 NTAEGSFMDTSVNSNLTITGSGFFVVNSNIDASYTAGNMFTRVGSFEPDEDGNLVNAAGL 126 Query: 121 Y 121 Y Sbjct: 127 Y 127 >gi|316936123|ref|YP_004111105.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] gi|315603837|gb|ADU46372.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] Length = 422 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 11/120 (9%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++A A Q L+ ++DN++N+ TVG++T FS++V A ++ + G L++ Sbjct: 11 ISALNAQSQSLAMISDNIANSQTVGYKTTSASFSQLVTAASG----ASTYSSGGVTVLAR 66 Query: 69 E----VGSFISTGTELDFALEGDAWF---ALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G +T + D + G+ +F + + TR G F + + G LV+ASG Y Sbjct: 67 SNITTQGLLTTTTSSTDIGISGNGFFPVTTAVTGGTTLYTRGGSFTLDNSGYLVNASGAY 126 >gi|254462557|ref|ZP_05075973.1| flagellar hook protein FlgE [Rhodobacterales bacterium HTCC2083] gi|206679146|gb|EDZ43633.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium HTCC2083] Length = 1399 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 22/151 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKN--DIDQKISFV 59 SF L + +ST ++N++N T GF+ + +F ++ ++N + + Sbjct: 2 SFYTALTGLNDAQSDISTSSNNIANVGTTGFKRSRAEFGDIFATSPLQNSSSSIGSGAIL 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKVTDDGSLVS 116 K+ ++ G+ S+ LD A+ G +FAL ++ ++ TR+G F V ++ ++V Sbjct: 62 KGVKQQFTQ--GNIASSLNALDMAISGQGFFALKPSQTSTQVVYTRNGSFNVDNNRNVVD 119 Query: 117 ASGK----YPVLDMASV---------PIQIP 134 +SG+ YPV + SV P+++P Sbjct: 120 SSGQFLLTYPVNEDGSVTAKDIDSATPLRLP 150 >gi|254439743|ref|ZP_05053237.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198255189|gb|EDY79503.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 1412 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 26/153 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 SF L + ++ ++N++N T GF+ + +F ++ + + S + SG Sbjct: 2 SFYTALTGLNGAQADIAASSNNIANVGTTGFKLSRAEFGDIFA--TSPLQNSTSSIGSGA 59 Query: 63 -----KEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSL 114 K+ ++ G+ ++ LD A+ G +FAL+ + ++ TR+G F V ++ ++ Sbjct: 60 ILKGVKQQFTQ--GNISASLNALDMAISGQGFFALKPSLTSTQVVYTRNGSFNVDNNRNV 117 Query: 115 VSASGK----YPVLDMAS---------VPIQIP 134 V +SG+ YPV + S VP+++P Sbjct: 118 VDSSGQFLLTYPVNEDGSVTAKDIDSAVPLRLP 150 >gi|188580157|ref|YP_001923602.1| hypothetical protein Mpop_0889 [Methylobacterium populi BJ001] gi|179343655|gb|ACB79067.1| protein of unknown function DUF1078 domain protein [Methylobacterium populi BJ001] Length = 460 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFV 59 +QT+ + GL AQ LS ++ N++N+ T G++ I F +++ + D Q V Sbjct: 7 LQTAVS-GLKAQ---SFSLSNISGNIANSQTTGYKRIDTSFVDML--VDGDARSQTAGSV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES-----------PRGIILTRDGRFKV 108 A+ E + G+ +STG + AL+G +F + + TR G F Sbjct: 61 AAFSELTNSVQGNKVSTGVSTNMALDGQGFFVVRKKTTDAGGAESFSNANLFTRRGDFAP 120 Query: 109 TDDGSLVSASGKYPV 123 DG LV+ +G Y V Sbjct: 121 DKDGYLVNGAGAYLV 135 >gi|188534169|ref|YP_001907966.1| flagellar basal body rod protein FlgF [Erwinia tasmaniensis Et1/99] gi|188029211|emb|CAO97083.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99] Length = 251 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 99/240 (41%), Gaps = 25/240 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA L+Q+ T A N++N T GFR ++ + V + + + V + Sbjct: 11 AASQTLDQQAVT-ASNLANASTPGFRA-QLNAARAVPVEGLSLPTR-TLVTASTPGADMT 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ T LD A++GD W A+++ G TR+G +V+ G L + G + D + Sbjct: 68 QGALDYTERPLDVAMQGDGWLAVQTANGTEAYTRNGNMQVSPTGQL-TVQGNAVMGDGGA 126 Query: 129 VPIQIPQKDEI----------FNVGEKGEIS-QKG--KVIATMGLYSVDMSQGFVRRENS 175 I IPQ EI N G+ + Q G K++ G G R S Sbjct: 127 --IAIPQGSEITIAADGSITALNPGDPPNATVQLGRLKLVQARGNELTRGDDGMFRVSAS 184 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLIDENEK 232 + LE + V G LE SN + M MI ++F + + +DENE+ Sbjct: 185 TQAQR--GATLEADPAMKVMPGVLEGSNVKATQTMVDMIANARRFEMQMKVISSVDENEQ 242 >gi|167945822|ref|ZP_02532896.1| flagellar basal-body rod protein FlgF [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 141 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 GS STG +LD A++G + A+++P G TR G KV +G L + G PV+ Sbjct: 35 GSLQSTGNDLDLAVKGAGFIAVQAPDGTEAYTRRGDLKVDANGMLSNGEG-LPVIGNGG- 92 Query: 130 PIQIPQKDEIFNVGEKGEIS 149 PI +P ++I +G G I+ Sbjct: 93 PISLPAHEQI-EIGSDGTIT 111 >gi|119477953|ref|ZP_01618053.1| flagellar hook protein [marine gamma proteobacterium HTCC2143] gi|119448866|gb|EAW30108.1| flagellar hook protein [marine gamma proteobacterium HTCC2143] Length = 429 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 26/131 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------------GAIKN 50 SFN L+ A L +N++N T+GF+ + +F +V G + N Sbjct: 2 SFNTALSGLRAANTDLEVSGNNIANASTIGFKRSRAEFGDVYANSLVSGSNTTGSGVLVN 61 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVT 109 I Q+ + G+ T LD A+ G +F + ES TR G F + Sbjct: 62 SISQQF------------DQGNISFTDNSLDLAINGTGFFVVAESSGATAYTRAGYFGID 109 Query: 110 DDGSLVSASGK 120 D+G + + SG Sbjct: 110 DEGYITNNSGS 120 >gi|310764860|gb|ADP09810.1| Flagellar hook protein FlgE [Erwinia sp. Ejp617] Length = 410 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 20/144 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ GL+ A L V +N++N+ T GF+ + F+++ Q + +G Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKAGSIGFADIFAGA-----QGMGVQVAGS 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 K+ G TG +D + G+ +F L G +R+G+F +G + + Sbjct: 57 SQNFKD-GGLTGTGRNMDMGINGNGFFRLMDEAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 117 -----ASGKYPVLD--MASVPIQI 133 A+G P + A PIQI Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQI 139 >gi|296274022|ref|YP_003656653.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] gi|296098196|gb|ADG94146.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] Length = 487 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L+ A + ++N++N +T+ + ++ F++ + +N I + V Sbjct: 1 MNGSLYNSLSGIYAASNYVDVASNNIANINTIAHKEDRISFADQM--YQNGIGKG---VG 55 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVSAS 118 +G S G T + DFA++G +F L P + TR G F ++DG+LV+A Sbjct: 56 AGTVNKSFRQGDVKDTNNQYDFAIQGKGFFILTDPETNLTYYTRAGNFTKSNDGTLVNAQ 115 Query: 119 G 119 G Sbjct: 116 G 116 >gi|259907634|ref|YP_002647990.1| Flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|224963256|emb|CAX54740.1| Flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|283477476|emb|CAY73392.1| flgE [Erwinia pyrifoliae DSM 12163] Length = 410 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 20/144 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ GL+ A L V +N++N+ T GF+ + F+++ Q + +G Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKAGSIGFADIFAGA-----QGMGVQVAGS 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 K+ G TG +D + G+ +F L G +R+G+F +G + + Sbjct: 57 SQNFKD-GGLTGTGRNMDMGINGNGFFRLMDEAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 117 -----ASGKYPVLD--MASVPIQI 133 A+G P + A PIQI Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQI 139 >gi|300311352|ref|YP_003775444.1| flagellar basal-body rod protein FlgE [Herbaspirillum seropedicae SmR1] gi|300074137|gb|ADJ63536.1| flagellar basal-body rod FlgE protein [Herbaspirillum seropedicae SmR1] Length = 432 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 21/146 (14%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQKISFV 59 F GL+ + L + +N++N TVGF+ + +F+++ N + +S Sbjct: 3 FQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQAQFADMYANSMNRSGNSPVGIGVSVP 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVS 116 A +++ G+ S+ LD A+ GD +F L + + + R+G+F++ G +V+ Sbjct: 63 AVAQQFTQ---GNISSSNNPLDIAINGDGFFQLSASLTNKSPMYGRNGQFQLDKSGYIVN 119 Query: 117 AS--GKYPVLDMAS-------VPIQI 133 S G Y ++ A+ VP+QI Sbjct: 120 PSMNGAY-LMGWAAGAQGGDPVPLQI 144 >gi|77464904|ref|YP_354408.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides 2.4.1] gi|77389322|gb|ABA80507.1| putative flagellar basal body rod protein [Rhodobacter sphaeroides 2.4.1] Length = 261 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 52/240 (21%), Positives = 106/240 (44%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI-SFV 59 G++AQ + R+ +++N++N T G+ + F+++ G + + + + + V Sbjct: 10 GMSAQ---QTRVDVISNNLANMSTTGYNARRADFADLHYQQAVRPGTVSAEDGRMLPTGV 66 Query: 60 ASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 G V +S G +LD A++G + + P G TRDG K + +G Sbjct: 67 QLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEVTLPSGQSAYTRDGALKRSAEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMS 166 +VS+ G + I IPQ ++ GE+ + +++ + L Sbjct: 127 LIVSSDGHE-----VAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQISLTGFTNE 181 Query: 167 QGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +G + E + P I ED G T+++G+LE+S+ +S+ E+ ++I + + Sbjct: 182 KGLEAIGSNLFLETAASGPPIAGVAGEDGFG-TLRQGYLEESSVDSVQEITELIKAQRGY 240 >gi|124268254|ref|YP_001022258.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] gi|124261029|gb|ABM96023.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] Length = 420 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 13/130 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKISF 58 SF GL+ A + L + +N++N T G ++ + +F +V G+ N + ++ Sbjct: 2 SFQQGLSGLNAASKNLEIIGNNVANASTFGAKSSRAEFGDVYANALNGSGTNMVGIGVNL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 +++ G+ +T +D A+ G +F + + + R+G+FK+ +G +V+ Sbjct: 62 ATVAQQFTQ---GNITTTDNPMDLAINGSGFFQVSDGKNPTMYARNGQFKIDREGFIVNN 118 Query: 118 SG----KYPV 123 SG YP Sbjct: 119 SGYKLLGYPA 128 >gi|221640825|ref|YP_002527087.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides KD131] gi|332559802|ref|ZP_08414124.1| FlgG2 [Rhodobacter sphaeroides WS8N] gi|221161606|gb|ACM02586.1| Flagellar basal-body rod protein FlgG precursor [Rhodobacter sphaeroides KD131] gi|332277514|gb|EGJ22829.1| FlgG2 [Rhodobacter sphaeroides WS8N] Length = 261 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 52/240 (21%), Positives = 106/240 (44%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI-SFV 59 G++AQ + R+ +++N++N T G+ + F+++ G + + + + + V Sbjct: 10 GMSAQ---QTRVDVISNNLANMSTTGYNARRADFADLHYQQVVRPGTVSAEDGRMLPTGV 66 Query: 60 ASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 G V +S G +LD A++G + + P G TRDG K + +G Sbjct: 67 QLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEVTLPSGQSAYTRDGALKRSAEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMS 166 +VS+ G + I IPQ ++ GE+ + +++ + L Sbjct: 127 LIVSSDGHE-----VAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQISLTGFTNE 181 Query: 167 QGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +G + E + P I ED G T+++G+LE+S+ +S+ E+ ++I + + Sbjct: 182 KGLEAIGSNLFLETAASGPPIAGVAGEDGFG-TLRQGYLEESSVDSVQEITELIKAQRGY 240 >gi|304310886|ref|YP_003810484.1| Flagellar basal body rod protein [gamma proteobacterium HdN1] gi|301796619|emb|CBL44831.1| Flagellar basal body rod protein [gamma proteobacterium HdN1] Length = 245 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 36/213 (16%) Query: 21 TVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------ 68 T A+N++N T GF K D Q S G Y S+ Sbjct: 21 THANNLANASTTGF--------------KADYQQYRSMQVFGSYYPSRVYAQTERPGTDM 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G++++TG LD A+ G W A+ G TR G + +G+LV+ SG + + Sbjct: 67 RGGNYMTTGRNLDVAVRGKGWIAVLDAEGKEAFTRAGDLERDLNGTLVTGSGLAVMGNDG 126 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ------GFVRRENSGISPNI 181 PI +P+ +I VG G IS + +G+ V+ + + + G+ Sbjct: 127 --PIVLPEYQKI-EVGMDGSISVRALGEDALGMVEVNRIRLVNPDPKALEKGEDGLFRMR 183 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + E + V + G LE SN N + E+ +I Sbjct: 184 DGSEPEASAEVALANGMLESSNVNPVSELTSVI 216 >gi|257876009|ref|ZP_05655662.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC20] gi|257810175|gb|EEV38995.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC20] Length = 233 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 104/248 (41%), Gaps = 53/248 (21%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKN-------DIDQKISFVASGKEY 65 L++R T + N++N +T G++ K F + A+ N D + I ++ G + Sbjct: 15 LQKRQETTSGNIANVNTTGYQA-KTLFQSALDEVALHNYQSGPNADTRRDIGGLSLGTQL 73 Query: 66 ----LSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFK-------VTDDGS 113 +S++ G+ TG DFAL + +F +++ G L TR+G F VT +G Sbjct: 74 AGSTISQDQGAVKQTGQASDFALLSEGYFVVQNNAGQRLYTRNGDFTVNQQNQYVTQEGY 133 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 LV + V + S QI + F + + T G Q +V Sbjct: 134 LVLGANGQAVSALGSANFQI----QTF----------PPEALTTAG-------QNYVTSN 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 +G + N P +++G LE +N EM MI +++F + + ++ Sbjct: 173 VAGTTVNAP----------VIQQGALEQANVAVADEMVAMIQTSREFEANQKALSSTNQT 222 Query: 234 MLEAIRNI 241 + +A+ + Sbjct: 223 LQKAVNEL 230 >gi|302343734|ref|YP_003808263.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301640347|gb|ADK85669.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 786 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 8/127 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T+ G+A Q LS VADN++N +T G++ +V F +V+ ++ V Sbjct: 3 MLTAMWAGVAGLNVHGQALSAVADNVANVNTHGYKASRVNFGDVMIHSLTVGGTVVNQVG 62 Query: 61 SGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPR----GIILTRDGRFKVTDDG 112 +G + LS + GSF +T D A+ G +F + + TR G+F + +G Sbjct: 63 TGAKVLSVQNLLTQGSFETTDVPTDMAINGGGFFQVNNTSAGQTAKYYTRAGQFLLDTEG 122 Query: 113 SLVSASG 119 +V+ G Sbjct: 123 YMVNPQG 129 >gi|30019815|ref|NP_831446.1| flagellar basal body rod protein FlgG [Bacillus cereus ATCC 14579] gi|218235496|ref|YP_002366457.1| flagellar basal body rod protein FlgG [Bacillus cereus B4264] gi|218896706|ref|YP_002445117.1| putative flagellar basal-body rod protein [Bacillus cereus G9842] gi|228907405|ref|ZP_04071263.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL 200] gi|228952155|ref|ZP_04114247.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958053|ref|ZP_04119788.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pakistani str. T13001] gi|229043528|ref|ZP_04191237.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH676] gi|229109228|ref|ZP_04238827.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-15] gi|229127099|ref|ZP_04256096.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-Cer4] gi|229149977|ref|ZP_04278203.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1550] gi|29895360|gb|AAP08647.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 14579] gi|218163453|gb|ACK63445.1| putative flagellar basal-body rod protein [Bacillus cereus B4264] gi|218540813|gb|ACK93207.1| putative flagellar basal-body rod protein [Bacillus cereus G9842] gi|228633499|gb|EEK90102.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1550] gi|228656215|gb|EEL12056.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-Cer4] gi|228674238|gb|EEL29483.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-15] gi|228725750|gb|EEL76998.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH676] gi|228801570|gb|EEM48452.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807509|gb|EEM54036.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228852266|gb|EEM97062.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL 200] Length = 257 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L ++SG + V+ + I+IP+ ++ V G E++Q IA + +VD Sbjct: 123 DRYLQTSSGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDAE 178 Query: 167 QG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 V+REN + NI P + +G+ VK LE+SN + EM ++ Sbjct: 179 TNARLVQRENKSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 228 >gi|50403744|sp|P50611|FLGE_HELMU RecName: Full=Flagellar hook protein flgE Length = 454 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 19/129 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------------NDID 53 G++ A + L ++N++N +T GF+ + F +++ K ND+ Sbjct: 8 GVSGMQAHQVALDVESNNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVS 67 Query: 54 QKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTD 110 + V S + S+ GS +T + D A+EGD +F + RG TRDG F Sbjct: 68 VGLGVNVNSTTKVFSQ--GSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDA 125 Query: 111 DGSLVSASG 119 +G+LV+ G Sbjct: 126 NGNLVTNGG 134 >gi|95929857|ref|ZP_01312598.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] gi|95134153|gb|EAT15811.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] Length = 548 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDIDQK 55 +Q+S G++ A L+ + +N++N++T+GF++ + FS E+ G+ + Sbjct: 3 IQSSLFSGVSGLNANGNALTVLGNNIANSNTIGFKSSRTIFSDLLSAEIAGSGGASQVGR 62 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGS 113 + +++ S+ G+F +T + D A+EG +F + P I TR G F + G+ Sbjct: 63 GAGLSTVDNIFSQ--GTFETTESNTDLAIEGPGFFMVSDPGEASIYYTRAGAFNFDETGT 120 Query: 114 LVSASG 119 LV+ G Sbjct: 121 LVNPEG 126 >gi|308184693|ref|YP_003928826.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] gi|308060613|gb|ADO02509.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] Length = 605 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN---- 234 Query: 230 NEKSMLEAIRN 240 N+ ++AI N Sbjct: 235 NDNEPIDAITN 245 >gi|283955493|ref|ZP_06372988.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 1336] gi|283792954|gb|EFC31728.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 1336] Length = 545 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 5/144 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKI 56 M SF G++ + A+N++N +T GF+ +F ++ + + Q Sbjct: 1 MMNSFYNGISGVKTNSFGIDIYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 S + E GS +++ +E D AL+G +F + G TR+G FK +G LV Sbjct: 61 YGSGSASSNVVFEQGSLVASDSEFDVALQGKGFFGVLGADGNAYYTRNGSFKRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEI 139 + G + + M I D + Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRV 144 >gi|109946869|ref|YP_664097.1| flagellar basal body rod protein FlgG [Helicobacter acinonychis str. Sheeba] gi|109714090|emb|CAJ99098.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis str. Sheeba] Length = 262 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKISFVASGKEY 65 LA + + T ++N++N +T GF+ + F+++ G ++ + G Sbjct: 13 LAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTLSPDGMEVGLGV 72 Query: 66 LSKEVGSFISTGT------ELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + S G+ LD A+ G +F ++ P G TR G FK+ + G+LV++ Sbjct: 73 RPSAITKMFSQGSPKETENNLDVAIVGKGFFQVQLPDGTTAYTRSGNFKLDEQGNLVTSE 132 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 G Y ++ I +P+ N+G G +S Sbjct: 133 G-YLLIPQ----ITLPEDTTQVNIGVDGTVS 158 >gi|284007173|emb|CBA72457.1| flagellar basal-body rod protein FlgG [Arsenophonus nasoniae] Length = 260 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 113/265 (42%), Gaps = 52/265 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +++N++N T GF+ + F +++ G++ ++ S + Sbjct: 11 GLDAQ---QTNMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGSLTSEQTLSPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G + L + G+ T D A++G +F ++ P G TRDG F+V + Sbjct: 68 LGTGVRPIATQRLHSQ-GNLSQTNGSTDVAIKGQGFFHIQLPDGTDAYTRDGAFQVDQNN 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQ--------KDEIFNVGEKG--EISQKGKVIAT----- 157 V+A G + V+ PI +P+ D I +V G E Q G++ T Sbjct: 127 QRVTAGG-FAVVP----PIVLPETALKVTISHDGIVSVVIPGNSEPQQVGQLALTTFVNE 181 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQM 213 GL S+ EN + N P+E GV + +G++E SN N E+ M Sbjct: 182 TGLESIG--------ENLYLETNSSGVPVETAPGVNGAGLLYQGYVETSNVNVAEELVSM 233 Query: 214 IHLTQKFNSITTLIDENEKSMLEAI 238 I TQ+ I + ML+ + Sbjct: 234 IQ-TQRAYEINSKAVSTSDQMLQRL 257 >gi|332296627|ref|YP_004438550.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] gi|332179730|gb|AEE15419.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] Length = 559 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 22/121 (18%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEV-----------------VGAIKNDIDQKISF 58 + + + +N++N +T+GF+ V FS++ + ++ + +I+ Sbjct: 16 QTAMDVIGNNIANVNTIGFKASTVTFSQMLSQTLSGASAPQNGLGGINPMQIGLGTQIAA 75 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +++ S E +TG D A++G+ +F + + TRDG F V +G+LV+++ Sbjct: 76 ISTPFTSSSTE-----NTGVNTDLAIQGNGFFIVNNGSQNFYTRDGSFNVDANGNLVNSA 130 Query: 119 G 119 G Sbjct: 131 G 131 >gi|317012717|gb|ADU83325.1| flagellar hook protein FlgE [Helicobacter pylori Lithuania75] Length = 605 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN---- 234 Query: 230 NEKSMLEAIRN 240 N+ ++AI N Sbjct: 235 NDNEPIDAITN 245 >gi|308183061|ref|YP_003927188.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] gi|308065246|gb|ADO07138.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] Length = 605 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN---- 234 Query: 230 NEKSMLEAIRN 240 N+ ++AI N Sbjct: 235 NDNEPIDAITN 245 >gi|317406201|gb|EFV86450.1| flagellar hook protein FlgE [Achromobacter xylosoxidans C54] Length = 495 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K++ + + Sbjct: 3 FGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSSTASFADVYASSRVGLGTKVAAIT--QR 60 Query: 65 YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG--- 119 + V G E D A++G F + G I+ TR+G F V + +V+A G Sbjct: 61 FTVGTV---NGGGGEYDIAIDGAKGMFRVTDESGAIMYTRNGEFLVDKNNFIVNAQGYRL 117 Query: 120 -KYPVLDMASVPIQI 133 YP + + P+++ Sbjct: 118 TGYPAGAIGANPVEL 132 >gi|295690742|ref|YP_003594435.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] gi|295432645|gb|ADG11817.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] Length = 587 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 9/122 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVASGKEYL 66 G++ +A L+ ++DN++N +TVG++ FS +V KN A +++ Sbjct: 10 GVSGLVANSSALAAISDNIANVNTVGYKRSSSNFSTLVTSGSKNQTYSAGGVKAQTHQFI 69 Query: 67 SKEVGSFISTGTELDFALEGDAWF-ALESPRGII------LTRDGRFKVTDDGSLVSASG 119 S++ G ST + LD ++ G +F A E P + TR G F++ G L + +G Sbjct: 70 SQQ-GLTQSTTSNLDLSISGSGFFVATEKPENLTAADTRSFTRAGSFQLDSLGYLRNDAG 128 Query: 120 KY 121 Y Sbjct: 129 LY 130 >gi|302338085|ref|YP_003803291.1| fagellar hook-basal body protein [Spirochaeta smaragdinae DSM 11293] gi|301635270|gb|ADK80697.1| fagellar hook-basal body protein [Spirochaeta smaragdinae DSM 11293] Length = 460 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 S G++ + R+ + +N+SN +TVGF+ +V F +++ + + V Sbjct: 3 SLYAGVSGLQNHQTRMDVIGNNISNVNTVGFKKGRVNFQDLLSQTMSGAARPTDEVGGVN 62 Query: 62 ------GKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 G S + GS +TG D A++GD +F S TR G F + ++ Sbjct: 63 PKQVGLGMNVASIDTVHTQGSLQTTGIMTDIAIQGDGFFIERSGDKEFYTRAGAFGLDEN 122 Query: 112 GSLVSAS 118 G+LV+ S Sbjct: 123 GTLVNPS 129 >gi|322421726|ref|YP_004200949.1| flagellar hook-basal body protein [Geobacter sp. M18] gi|320128113|gb|ADW15673.1| flagellar hook-basal body protein [Geobacter sp. M18] Length = 294 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 22/140 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ L + ++ + +N+SN +T+GF+ + FS+++ + D +I GK Sbjct: 10 GVTGLLQNGEAMNVIGNNISNVNTIGFKGARTLFSDMLSQNVGN-DSQI-----GKGVQM 63 Query: 68 KEVGSFISTGTE------LDFALEGDAWFALE-----SP----RGIILTRDGRFKVTDDG 112 + V + S G+ D A++G+ +FAL+ SP L+R G F+V + Sbjct: 64 QVVQNVFSQGSTQSSENVTDLAIQGNTFFALKPSTAASPVATQNSAFLSRAGAFQVDNTL 123 Query: 113 SLVSASGKYPVLDMASVPIQ 132 +LV+ G Y VLD PI+ Sbjct: 124 TLVNPDG-YQVLDTQGNPIK 142 >gi|109947808|ref|YP_665036.1| flagellar hook protein FlgE [Helicobacter acinonychis str. Sheeba] gi|109715029|emb|CAK00037.1| flagellar hook protein [Helicobacter acinonychis str. Sheeba] Length = 605 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|210135099|ref|YP_002301538.1| flagellar hook protein FlgE [Helicobacter pylori P12] gi|210133067|gb|ACJ08058.1| flagellar hook protein [Helicobacter pylori P12] Length = 605 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN---- 234 Query: 230 NEKSMLEAIRN 240 N+ ++AI N Sbjct: 235 NDNEPIDAITN 245 >gi|188527733|ref|YP_001910420.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|188143973|gb|ACD48390.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] Length = 605 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKNGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKNHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|7514872|pir||S61455 flagellar hook protein flgE - Helicobacter mustelae (fragment) Length = 454 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 19/129 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------------NDID 53 G++ A + L ++N++N +T GF+ + F +++ K ND+ Sbjct: 8 GVSGMQAHQVALDVESNNIANVNTTGFKYSRATFVDMISQTKLIATSPHKGGLGGQNDVS 67 Query: 54 QKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTD 110 + V S + S+ GS +T + D A+EGD +F + RG TRDG F Sbjct: 68 VGLGVNVNSTTKVFSQ--GSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDA 125 Query: 111 DGSLVSASG 119 +G+LV+ G Sbjct: 126 NGNLVTNGG 134 >gi|153834474|ref|ZP_01987141.1| FlgE [Vibrio harveyi HY01] gi|156973586|ref|YP_001444493.1| flagellar hook protein FlgE [Vibrio harveyi ATCC BAA-1116] gi|148869170|gb|EDL68202.1| FlgE [Vibrio harveyi HY01] gi|156525180|gb|ABU70266.1| hypothetical protein VIBHAR_01289 [Vibrio harveyi ATCC BAA-1116] Length = 437 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 30/121 (24%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFVASGKE 64 L+T ++N++N +T GF+ + +FS+V GA N + Q+ Sbjct: 16 LNTTSNNIANANTYGFKESRAEFSDVYSNSLFTNAKTTPGGGAQANQVAQQF-------- 67 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGII----LTRDGRFKVTDDGSLVSASGK 120 GS I T +D + G +FA+ R I +TR+G F + D +V+A+ + Sbjct: 68 ----HEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEMTRNGAFHLNKDNYMVTANDE 123 Query: 121 Y 121 + Sbjct: 124 F 124 >gi|269961599|ref|ZP_06175961.1| flagellar hook protein [Vibrio harveyi 1DA3] gi|269833640|gb|EEZ87737.1| flagellar hook protein [Vibrio harveyi 1DA3] Length = 437 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 30/121 (24%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFVASGKE 64 L+T ++N++N +T GF+ + +FS+V GA N + Q+ Sbjct: 16 LNTTSNNIANANTYGFKESRAEFSDVYSNSLFTNAKTTPGGGAQANQVAQQF-------- 67 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGII----LTRDGRFKVTDDGSLVSASGK 120 GS I T +D + G +FA+ R I +TR+G F + D +V+A+ + Sbjct: 68 ----HEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEMTRNGAFHLNKDNYMVTANDE 123 Query: 121 Y 121 + Sbjct: 124 F 124 >gi|324113871|gb|EGC07845.1| fagellar hook-basal body protein [Escherichia fergusonii B253] gi|325497616|gb|EGC95475.1| flagellar hook protein FlgE [Escherichia fergusonii ECD227] Length = 401 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 13/127 (10%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPVLDMAS 128 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G YP A Sbjct: 67 TNTGRGLDIAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPA---AG 123 Query: 129 VPIQIPQ 135 P I Q Sbjct: 124 TPPTIQQ 130 >gi|258512706|ref|YP_003186140.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479432|gb|ACV59751.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 262 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 19/159 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQK---------- 55 GL+ A + +ADN++N T G+ + F++++ N D Sbjct: 8 GLSGIQAANAWMDQIADNLANLQTPGYAAEQGTFADLLTMQVYGNATDPSSAARVTPPGW 67 Query: 56 ---ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT--D 110 V +G+E + + + TG A+EG +F +++P G + TR G F + Sbjct: 68 RGGTGVVRTGEERDFSQA-AVVRTGIPTHLAIEGPGFFVVQTPSGRMYTRAGNFIWSRRS 126 Query: 111 DGSLVSASGKY-PVLDMASVPIQIPQKDEIFNVGEKGEI 148 DGS V A+ PVL A PI P V G + Sbjct: 127 DGSFVLATQTGDPVLSAAGQPIVKPADAPSMTVAPDGTV 165 >gi|15611911|ref|NP_223562.1| flagellar hook protein FlgE [Helicobacter pylori J99] gi|4155414|gb|AAD06422.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori J99] Length = 605 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|317011118|gb|ADU84865.1| flagellar hook protein FlgE [Helicobacter pylori SouthAfrica7] Length = 605 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|212640498|ref|YP_002317018.1| flagellar hook-basal body protein [Anoxybacillus flavithermus WK1] gi|212561978|gb|ACJ35033.1| Flagellar hook-basal body protein [Anoxybacillus flavithermus WK1] Length = 274 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---DQKISFVASG--------- 62 L+Q+L ++ N++N +T GF+ F E++ ++ D+ +G Sbjct: 15 LQQQLDVISHNIANVNTTGFKKRDAVFGELLAQQFTNLPTTDEAPRLTPAGVRLGVGAKV 74 Query: 63 -KEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTRDGRFKVT------DDGSL 114 Y+ + GS + T LD AL + +F + I TRDG F ++ D+ + Sbjct: 75 ASTYMQMKQGSVVKTDRPLDLALTKEGQFFRIFVDGAIQYTRDGAFYLSPSANNPDELMI 134 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKGKVIATMGL 160 V+A G Y VL+ PI + + V + G I+ G ++ T+ + Sbjct: 135 VTADG-YAVLNENDEPITVRDGFKDIQVTQNGTMQFIAPNGNIMQTVNI 182 >gi|119947176|ref|YP_944856.1| flagellar basal-body rod protein FlgF [Psychromonas ingrahamii 37] gi|119865780|gb|ABM05257.1| flagellar basal-body rod protein FlgF [Psychromonas ingrahamii 37] Length = 243 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 22/220 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A++L + Q + A+NM+ +T+GF+ + V + D +S V S S + Sbjct: 12 ASKLMISQHVR--ANNMAQVNTIGFKAV---LERTVPVFRTG-DGFLSSVTSRSNSTSID 65 Query: 70 V--GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G TG LD A+ GD +FA+ G TR G K + DG L + +L Sbjct: 66 FSHGKLSQTGRPLDVAITGDGFFAVRGNDGKESYTRAGNIKASADGEL--SVNNNALLGT 123 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ-GFVRRENSGISPNIPPT- 184 + +P+ + + KG I+ V++ G S+++ Q V + + ++ N T Sbjct: 124 GGEQLVLPEHQSL-TISNKGIIT----VMSNGGGASIEVGQIKLVNPDTNKLTLNTSGTF 178 Query: 185 ----PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 PLE V + +LE +N + + EM ++ T+++ Sbjct: 179 SSAVPLEASPDVEMTSEYLESANVSVISEMIGVMTATRQY 218 >gi|317182208|dbj|BAJ59992.1| flagellar hook protein FlgE [Helicobacter pylori F57] Length = 605 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|317014317|gb|ADU81753.1| flagellar hook protein FlgE [Helicobacter pylori Gambia94/24] Length = 605 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|307637597|gb|ADN80047.1| Flagellar hook protein [Helicobacter pylori 908] gi|325996190|gb|ADZ51595.1| Flagellar hook protein [Helicobacter pylori 2018] gi|325997786|gb|ADZ49994.1| Flagellar hook protein [Helicobacter pylori 2017] Length = 605 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|261838284|gb|ACX98050.1| flagellar hook protein [Helicobacter pylori 51] Length = 605 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|224437581|ref|ZP_03658537.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 718 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 16/143 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF- 58 G++ A + L ++N++N +TVGF+ + F +++ IK N + + F Sbjct: 8 GVSGMQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFS 67 Query: 59 --VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDG 112 + G + +K G+ +T + D A+EGD +F + RG TR+G F +G Sbjct: 68 IGLGVGIDATTKVFSQGNTQNTDVKTDIAIEGDGFFIISPDRGTTHNYTRNGEFLFDANG 127 Query: 113 SLVSASGKYPVLDMASVPIQIPQ 135 +LV+ +G Y V P++ + Sbjct: 128 NLVT-TGGYVVQGWVRPPLEAAE 149 >gi|148256818|ref|YP_001241403.1| putative flagellar hook protein flgE [Bradyrhizobium sp. BTAi1] gi|146408991|gb|ABQ37497.1| putative Flagellar hook protein flgE [Bradyrhizobium sp. BTAi1] Length = 601 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 17/133 (12%) Query: 1 MQTSFNIGLAAQ-LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M TS + GL+AQ AL+ ++ N++N TVG++ I F +++ N Q V Sbjct: 7 MNTSVS-GLSAQSFALQN----ISGNIANASTVGYKGIGTSFEDLIPNATNPTRQNAGGV 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKV 108 + + G+ ++ + A+ GD +F ++ ++ TR G F++ Sbjct: 62 TAFAKATITTQGTVSTSSVATNMAINGDGFFNVQKASSVVDNVPVFTGVTNYTRRGDFQL 121 Query: 109 TDDGSLVSASGKY 121 +G+L++ +G Y Sbjct: 122 NANGNLINGAGYY 134 >gi|258592496|emb|CBE68805.1| putative Flagellar hook protein flgE [NC10 bacterium 'Dutch sediment'] Length = 412 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAI-----KNDI 52 ++F+ + A + L + +N++N +T G++ + +FSE++ GA I Sbjct: 2 STFSTAITGLKAYQTDLGVIGNNIANANTTGYKASRAQFSELLVQTIEGATPPSDSTGGI 61 Query: 53 D--QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 D Q + V G + G+ TG D A++G+ ++ L + I TR G F++ Sbjct: 62 DPMQIGAGVIVGGILNIQTQGAIEPTGRSSDLAIQGEGFYVLSNGESQIYTRVGSFELDA 121 Query: 111 DGSLVSA 117 +G+LV A Sbjct: 122 NGNLVDA 128 >gi|317133466|ref|YP_004092780.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] gi|315471445|gb|ADU28049.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] Length = 234 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 20/152 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKND 51 M +F G A+ + + + +A++++N +T G+ FS+++ + N+ Sbjct: 1 MIQAFFGGAASLRSRQTAMDVIANDIANVNTAGYVQRDTDFSDLLYDSMVRPENPSYANE 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT- 109 ++ + V + GSF+ TG+ L+FA G+ +FA+ +G++ TRDG F Sbjct: 61 LEGSGAGVDA--VVADASAGSFVQTGSLLNFAPRGEGFFAVRDAQGVVSYTRDGTFTAQP 118 Query: 110 DDGS--LVSASGKYPVLDMA--SVPIQ--IPQ 135 ++G+ LV A G+ VLD ++ +Q +PQ Sbjct: 119 ENGAAVLVDAQGR-TVLDAQGNAIAVQNGVPQ 149 >gi|15645524|ref|NP_207700.1| flagellar hook protein FlgE [Helicobacter pylori 26695] gi|2314044|gb|AAD07954.1| flagellar hook (flgE) [Helicobacter pylori 26695] Length = 605 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|315586853|gb|ADU41234.1| flagellar hook protein [Helicobacter pylori 35A] Length = 605 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|217032455|ref|ZP_03437948.1| hypothetical protein HPB128_175g16 [Helicobacter pylori B128] gi|298736140|ref|YP_003728665.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|216945863|gb|EEC24483.1| hypothetical protein HPB128_175g16 [Helicobacter pylori B128] gi|298355329|emb|CBI66201.1| flagellar hook protein FlgE [Helicobacter pylori B8] Length = 605 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 36/200 (18%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGV 192 GIS N+ P + L GV Sbjct: 191 TKVGISVNL--NPKDHLKGV 208 >gi|317177697|dbj|BAJ55486.1| flagellar hook protein FlgE [Helicobacter pylori F16] Length = 605 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 24/126 (19%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S VA+ + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVANDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKY 121 + G Y Sbjct: 138 TPEGYY 143 >gi|317047691|ref|YP_004115339.1| flagellar hook-basal body protein [Pantoea sp. At-9b] gi|316949308|gb|ADU68783.1| flagellar hook-basal body protein [Pantoea sp. At-9b] Length = 406 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 6/119 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLSAASSNLDVIGNNIANSATAGFKSSTIAFADLFAGSDVGLGTKVAAVIQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G+ +T LD AL G+ +F + G + +R+G+F + ++ +LV+ G Y Sbjct: 60 ---NFNDGTTTTTSRGLDVALSGNGFFRMTDSSGAVYYSRNGQFTLDENRNLVNTQGLY 115 >gi|257871307|ref|ZP_05650960.1| flagellar hook-basal body complex protein [Enterococcus gallinarum EG2] gi|257805471|gb|EEV34293.1| flagellar hook-basal body complex protein [Enterococcus gallinarum EG2] Length = 233 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 52/252 (20%), Positives = 103/252 (40%), Gaps = 61/252 (24%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKN-------DIDQKISFVASGKEY 65 L++R T + N++N +T G++ K F + A+ N D + I ++ G + Sbjct: 15 LQKRQETTSGNIANVNTTGYQA-KALFQSALDEVALHNYQSGPNADTRRDIGGLSLGTQL 73 Query: 66 ----LSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGK 120 +S++ G+ TG DFAL + +F +++ G L TR+G F V V+ G Sbjct: 74 AGSTISQDQGAVKQTGQASDFALLSEGYFVVQNNAGQRLYTRNGDFTVNQQNQYVTQEG- 132 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS-----------QGF 169 Y VL G+ ++ +G + + Q + Sbjct: 133 YLVLGA------------------------NGQAVSALGPANFQIQSFPPEALTTDGQNY 168 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 V +G + N P +++G LE +N + EM MI +++F + ++ Sbjct: 169 VTSNAAGTNVNAP----------VIQQGALEQANVSVADEMVAMIQTSREFEANQKVLSS 218 Query: 230 NEKSMLEAIRNI 241 +++ +A+ + Sbjct: 219 TNQTLQKAVNEL 230 >gi|218549196|ref|YP_002382987.1| flagellar hook protein FlgE [Escherichia fergusonii ATCC 35469] gi|218356737|emb|CAQ89365.1| flagellar hook protein [Escherichia fergusonii ATCC 35469] Length = 401 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 13/127 (10%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPVLDMAS 128 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G YP A Sbjct: 67 TNTGRGLDIAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPA---AG 123 Query: 129 VPIQIPQ 135 P I Q Sbjct: 124 TPPTIQQ 130 >gi|315453407|ref|YP_004073677.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] gi|315132459|emb|CBY83087.1| flagellar hook protein, FlgE [Helicobacter felis ATCC 49179] Length = 601 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 22/125 (17%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------DQKISFVASGKEYLSKEVG 71 + +V++N++N +TVG+R +F + + N + + + A+G +S + G Sbjct: 19 IDSVSNNIANINTVGYRRNDPEFKSLFASHLNTLGGNTVTANDRNYGAAAGGNAISSKDG 78 Query: 72 SFISTGTELDFALEGDAWF---------------ALESPRGIILTRDGRFKVTDDGSLVS 116 ++ + ++ + A +G WF + + TRDG F DG +V+ Sbjct: 79 EYMPSDSDFNMAYQGSGWFIVGPNKNGSMQINKDGYQQAQENFYTRDGNFLRDADGYIVN 138 Query: 117 ASGKY 121 + G Y Sbjct: 139 SHGYY 143 >gi|207108815|ref|ZP_03242977.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1] Length = 167 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A++GD +F + RGI TRDG F GSL Sbjct: 70 LGVGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDGEFLFDSQGSL 129 Query: 115 VSASG 119 V+ G Sbjct: 130 VTTGG 134 >gi|146278639|ref|YP_001168798.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] gi|145556880|gb|ABP71493.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] Length = 261 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 34/239 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI-SFV 59 G++AQ + R+ +++N++N T G+ + F+++ G + + + + + V Sbjct: 10 GMSAQ---QTRVDVISNNLANMSTTGYNPRRADFADLHYQQMVRPGTVSAEDGRMLPTGV 66 Query: 60 ASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 G V +S G +LD A++G + + P G TRDG K + +G Sbjct: 67 QLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYIEVTLPSGQSAYTRDGSLKRSGEG 126 Query: 113 SLVSASGK--YPVL----DMASVPIQIPQKDEIFNVGE-----KGEISQKGKVIATMGLY 161 +V++ G P + D ASV I + + G+ G+I+ G GL Sbjct: 127 LVVTSDGHEVAPGITIPEDAASVAINGSGEVWAYFSGQVQPQLMGQITLSG-FANEKGLE 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ S FV SG +P I TP ED G T+++G+LE+S+ +S+ E+ ++I + + Sbjct: 186 AIG-SNLFVETAASG-AP-IAGTPGEDGFG-TLRQGYLEESSVDSVQEITELIKAQRGY 240 >gi|146341930|ref|YP_001206978.1| putative flagellar hook protein flgE [Bradyrhizobium sp. ORS278] gi|146194736|emb|CAL78761.1| putative Flagellar hook protein flgE [Bradyrhizobium sp. ORS278] Length = 601 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 17/133 (12%) Query: 1 MQTSFNIGLAAQ-LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M TS + GL+AQ AL+ ++ N++N TVG++ I F +++ N Q V Sbjct: 7 MNTSVS-GLSAQSFALQN----ISGNIANASTVGYKGIGTSFEDLIPNATNPTRQNAGGV 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKV 108 + + G+ ++ + A+ GD +F ++ ++ TR G F++ Sbjct: 62 TAFAKATITTQGTVSTSSVATNMAINGDGFFNVQKATSVVDNVPVFTGVTNYTRRGDFQL 121 Query: 109 TDDGSLVSASGKY 121 +G+L++ +G Y Sbjct: 122 NANGNLINGAGYY 134 >gi|148259130|ref|YP_001233257.1| flagellar hook protein FlgE [Acidiphilium cryptum JF-5] gi|146400811|gb|ABQ29338.1| flagellar basal body FlaE domain protein [Acidiphilium cryptum JF-5] Length = 425 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 40/159 (25%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKISFVASGKE 64 GL AQ + ++DN++N+ T+G++ + F+ + A N D V + E Sbjct: 13 GLQAQ---SSAFTNISDNIANSQTIGYKGVNTHFTNYLVQSTASNNGPDS----VVANPE 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGI---------------ILTRDGRFKVT 109 Y + G+ + L A+ G+ +F + P TR G F + Sbjct: 66 YTNTVEGTITQSSNPLSLAINGNGYFNVSLPGPTTTTAGKTTQTFDAQQYYTRAGDFTLN 125 Query: 110 DDGSLVSASGKYPVLDMASV-------------PIQIPQ 135 G LV+ +G Y LD SV PIQ+ Q Sbjct: 126 SSGYLVNGAGAY--LDGWSVNPTTGTVNTSSLAPIQVSQ 162 >gi|123442784|ref|YP_001006761.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161322|ref|YP_004297899.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089745|emb|CAL12598.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605242|emb|CBY26740.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665552|gb|ADZ42196.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860606|emb|CBX70903.1| flagellar hook protein flgE [Yersinia enterocolitica W22703] Length = 419 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 29/136 (21%), Positives = 67/136 (49%), Gaps = 18/136 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF+ V F+++ + + K++ + +++ G+ Sbjct: 12 AASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGIT--QDF---NDGTT 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ +F ++ S G++ R+G+FK+ ++ ++V+ A+G P Sbjct: 67 TTTNRRLDLAISQSGFFRMQDSSGGVLYARNGQFKLDENRNIVNMQGLSLTGYPATGTPP 126 Query: 123 VLDMASVPI--QIPQK 136 + + P+ +PQ Sbjct: 127 TVQQGANPVALSVPQN 142 >gi|32265682|ref|NP_859714.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] gi|32261730|gb|AAP76780.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] Length = 745 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 31/148 (20%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVG----------AIKNDIDQKISFVASGKEYLSK 68 L ++++N++N +T+G+R +F + I ND++ + ++ +S Sbjct: 19 LDSISNNIANVNTIGYRENIPQFETLFANNMDFLNADSPINNDMNYGATKSSNA---IST 75 Query: 69 EVGSFISTGTELDFALEGDAWF---------------ALESPRGIILTRDGRFKVTDDGS 113 GS+ +T E + A EG WF E + TRDG F +G Sbjct: 76 RSGSYKATDGEFNVAYEGKGWFIVGEQKSGSFEIKDDGYEKKQKNYFTRDGSFLRDGEGY 135 Query: 114 LVSASGKYPV-LDMASVP--IQIPQKDE 138 +V+ SG Y +D+ + I KDE Sbjct: 136 IVNTSGYYMYGVDLGKIEDGIYTSNKDE 163 >gi|326402284|ref|YP_004282365.1| flagellar hook protein FlgE [Acidiphilium multivorum AIU301] gi|325049145|dbj|BAJ79483.1| flagellar hook protein FlgE [Acidiphilium multivorum AIU301] Length = 425 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 40/159 (25%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKISFVASGKE 64 GL AQ + ++DN++N+ T+G++ + F+ + A N D V + E Sbjct: 13 GLQAQ---SSAFTNISDNIANSQTIGYKGVNTHFTNYLVQSTASNNGPDS----VVANPE 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGI---------------ILTRDGRFKVT 109 Y + G+ + L A+ G+ +F + P TR G F + Sbjct: 66 YTNTVEGTITQSSNPLSLAINGNGYFNVSLPGPTTTTAGKTTQTFDAQQYYTRAGDFTLN 125 Query: 110 DDGSLVSASGKYPVLDMASV-------------PIQIPQ 135 G LV+ +G Y LD SV PIQ+ Q Sbjct: 126 SSGYLVNGAGAY--LDGWSVNPTTGTVNTSSLAPIQVSQ 162 >gi|261821154|ref|YP_003259260.1| flagellar basal body rod protein FlgF [Pectobacterium wasabiae WPP163] gi|261605167|gb|ACX87653.1| flagellar basal-body rod protein FlgF [Pectobacterium wasabiae WPP163] Length = 251 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 34/247 (13%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVASGKEY 65 +G A+Q +LE++ T A+N++N T GFR + S + N + + V + Sbjct: 9 MGGASQ-SLEKQAIT-ANNLANASTPGFR---AQLSALRAVPVNGLTLPTRTLVVASTPG 63 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG +D AL ++W A+++ G TR+G +++ DG L + G+ + Sbjct: 64 ADMTEGVMNYTGRAMDVALPKESWLAVQTANGGEAYTRNGNMEISADGQL-TIQGRVVMG 122 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGI- 177 D PI IP + +I ++ G IS IA +G L V + V R + G+ Sbjct: 123 DGG--PIDIPPQAQI-SISPDGTISALNAGDPPNTIAQLGRLKLVKATGQEVERSDDGLF 179 Query: 178 ---------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITT 225 N+ L++ V + G +E SN N++ M MI ++F + + Sbjct: 180 RLTQQAQQQRGNV----LQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKVIS 235 Query: 226 LIDENEK 232 +D+N + Sbjct: 236 SVDDNAQ 242 >gi|37525843|ref|NP_929187.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785272|emb|CAE14213.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 260 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 39/241 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKIS--F 58 GL AQ + + +A+N++N T GF+ + F +++ GA+ ++ + S Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAIFEDLLYQNIRQPGAMSSEQTRLPSGLQ 67 Query: 59 VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 + +G ++ E G+ T + A+ G +F ++ P G TRDG F+ +G Sbjct: 68 IGTGVRPVATERIHSQGNLSETNNSHNVAIRGKGFFQVQLPDGTSAYTRDGSFQEDQNGQ 127 Query: 114 LVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEI--SQKGKVIATM-----GLYSV 163 L +A+G +P + + + D I +V +G+ Q G+ T GL S+ Sbjct: 128 LTTANGFLIFPTITIPDNATDLTISSDGIVSVKVQGQSVPQQVGQFTLTTFINDSGLESI 187 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQK 219 + +V +SG+ P+E+ G+ ++ ++E SN N E+ MI + Sbjct: 188 GENL-YVETSSSGV-------PIENTPGINGAGLLQHKYVETSNVNIAEELVNMIQTQRA 239 Query: 220 F 220 + Sbjct: 240 Y 240 >gi|229172418|ref|ZP_04299977.1| Flagellar basal-body rod protein flgG [Bacillus cereus MM3] gi|228610889|gb|EEK68152.1| Flagellar basal-body rod protein flgG [Bacillus cereus MM3] Length = 257 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 45/238 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ G A F + S LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L + SG + V+ + I+IP+ G K + G + IA + + Sbjct: 123 DRYLQTTSGAF-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKT 174 Query: 163 V--DMSQGFVRRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 V + + V+REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 175 VGAEANNRLVQRENKSFTLAEGNIADLP----NGVGTVKNHMLENSNVDMTKEMADLM 228 >gi|187478187|ref|YP_786211.1| flagellar basal body rod protein FlgG [Bordetella avium 197N] gi|115422773|emb|CAJ49301.1| flagellar basal-body rod protein [Bordetella avium 197N] Length = 261 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 39/232 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFV--ASGKEYLSKE 69 + ++ N++N T GF+ + F +++ GA D +Q + + +G + + Sbjct: 19 MDVISHNLANVQTNGFKRERAVFQDLMYQTLRQPGAQVGDANQLPTGLQLGTGARVAATQ 78 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ +TG E+D A++G +F ++ P G TRDG + +G L + G Sbjct: 79 RLHSAGNLNNTGAEMDVAIQGRGFFQVDLPDGTQAYTRDGGLGMDQNGQLTTMGGY---- 134 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS----------------QKGKVIATMGLYSVDMSQG 168 + PI +P + ++G +S Q I GL SV + Sbjct: 135 -VIQPPINVPDNALSMAINKEGVVSVTLPGNAGVNVQIGQLQVATFINPAGLQSVGENL- 192 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ + SG P P D +G ++ + ++E SN N E+ MI + + Sbjct: 193 YLETDASG--PANLLQPGADGAG-SIMQNYVETSNVNVAEELVNMITAQRAY 241 >gi|302037613|ref|YP_003797935.1| flagellar hook protein FlgE [Candidatus Nitrospira defluvii] gi|300605677|emb|CBK42010.1| Flagellar hook protein FlgE [Candidatus Nitrospira defluvii] Length = 407 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 28/117 (23%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDIDQKISFVASGK 63 + + +N++N T GF++ + FS+++ G ND+ S Sbjct: 21 MGVIGNNIANVGTAGFKSSRATFSDLISSSLGGGSGSDQIGLGVFLNDVQTNFS------ 74 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 GS +TG D A++G+ ++ + + G +R G+FKV G +V +SG Sbjct: 75 ------QGSMTTTGNTFDLAIDGNGFYLVRNTSGANFYSRAGQFKVDSLGQVVDSSG 125 >gi|225620340|ref|YP_002721597.1| flagellar hook protein FlgE [Brachyspira hyodysenteriae WA1] gi|225215159|gb|ACN83893.1| flagellar hook protein FlgE [Brachyspira hyodysenteriae WA1] Length = 423 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 14/118 (11%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK--------ISFVASGKEY 65 + V +N++N +T GF+ +V F +++ GA K D+ + + + + Sbjct: 1 MDVVGNNIANVNTYGFKRGRVTFKDMISQSLSGAAKPQEDRGGINPQQVGLGMMVATIDT 60 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + + G+ TG D A++G+ +F + TR+G F + DG LV+ S Y V Sbjct: 61 IHTQ-GALQVTGVNTDLAIQGEGFFIEKRGNNSYYTRNGAFSLDKDGYLVNPSNGYKV 117 >gi|126463746|ref|YP_001044860.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] gi|126105410|gb|ABN78088.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] Length = 261 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 52/240 (21%), Positives = 106/240 (44%), Gaps = 36/240 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQKI-SFV 59 G++AQ + R+ +++N++N T G+ + F+++ G + + + + + V Sbjct: 10 GMSAQ---QTRVDVISNNLANMSTTGYNARRADFADLHYQQVVRPGTVSAEDGRMLPTGV 66 Query: 60 ASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 G V +S G +LD A++G + + P G TRDG K + +G Sbjct: 67 QLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEVTLPSGQSAYTRDGALKRSAEG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMS 166 +VS+ G + I IPQ ++ GE+ + +++ + L Sbjct: 127 LIVSSDGHE-----VAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQISLTGFTNE 181 Query: 167 QGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 +G + E + P I ED G T+++G+LE+S+ +S+ E+ ++I + + Sbjct: 182 KGLEAIGSNLFLETAASGPPIGGVAGEDGFG-TLRQGYLEESSVDSVQEITELIKAQRGY 240 >gi|291334312|gb|ADD93973.1| flagellar hook protein [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 376 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 11/135 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SF L + ++T ++N++N + GF+ + +F ++ G+ ++ + + S Sbjct: 2 SFYTALTGLKGAQTDIATTSNNIANVGSSGFKKSRAEFGDIFGSTPLQTNTVGAGTATKS 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 K+ S+ G+ + LD A+ G +F L+ + + TR+G F V D G +V ++ Sbjct: 62 IKQQFSQ--GNISQSTNTLDMAVSGQGFFTLKGGGNAGQTVFTRNGSFSVNDAGFIVDSN 119 Query: 119 GK----YPVLDMASV 129 G+ YPV + +V Sbjct: 120 GQFLLGYPVDNGGAV 134 >gi|257866396|ref|ZP_05646049.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC30] gi|257873088|ref|ZP_05652741.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC10] gi|257800354|gb|EEV29382.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC30] gi|257807252|gb|EEV36074.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC10] Length = 233 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 41/242 (16%) Query: 15 LEQRLSTVADNMSNTDTVGF--RTI------KVKFSEVVGAIKNDIDQKISFVASGKEY- 65 L++R T + N++N +T G+ +T+ +V G D + I ++ G + Sbjct: 15 LQKRQETTSGNIANVNTTGYQAKTLFQSALDEVALHNYQGGPNADTRRDIGGLSLGTQLA 74 Query: 66 ---LSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKY 121 +S++ G+ TG DFAL + +F +++ G L TR+G F V V+ G Y Sbjct: 75 GSTISQDQGAVKQTGQASDFALLSEGYFVVQNNAGQRLYTRNGDFTVNQQNQYVTQEG-Y 133 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRRENSGISP 179 VL + +G + Q + + T G Q +V +G + Sbjct: 134 LVLGANGQAVSA--------LGPANFLIQTFPPEALTTAG-------QNYVTSNAAGTTV 178 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N P +++G LE +N EM MI +++F + + +++ +A+ Sbjct: 179 NAP----------VIQQGALEQANVAVADEMVAMIQTSREFEANQKALSSTNQTLQKAVN 228 Query: 240 NI 241 + Sbjct: 229 EL 230 >gi|296331269|ref|ZP_06873741.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676256|ref|YP_003867928.1| putative flagellar hook-basal body protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151384|gb|EFG92261.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414500|gb|ADM39619.1| putative flagellar hook-basal body protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 269 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 58/257 (22%), Positives = 110/257 (42%), Gaps = 34/257 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE---------- 64 L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA ++ Sbjct: 15 LQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVAKARKTPPGLRLGVG 74 Query: 65 -----YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT------DDG 112 L + GS T +LD A + + G TRDG +T + Sbjct: 75 AMMNSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDGALYLTPSVANANQL 134 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIA--TMGLYSVDMSQGF 169 LV+ +G PVLD + I + + + G ++ G + +G+ V+ Q Sbjct: 135 QLVTGNGN-PVLDENGNTVNIDSSMKNITINKNGTLTASDGSAVQRFNLGVVQVNNPQEL 193 Query: 170 VRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI--HLTQKFNS 222 N+ S + E L+G + +++G LE SN + +M +I + + NS Sbjct: 194 KSEGNNLFSID-NAAAFEQLNGANRQNIGIEQGSLEMSNVDISEQMTDLITSQRSYQLNS 252 Query: 223 ITTLIDENEKSMLEAIR 239 T + + ++ ++R Sbjct: 253 RTITMGDQMLGLINSVR 269 >gi|30261777|ref|NP_844154.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Ames] gi|47527010|ref|YP_018359.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. 'Ames Ancestor'] gi|49184611|ref|YP_027863.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Sterne] gi|65319054|ref|ZP_00392013.1| COG4786: Flagellar basal body rod protein [Bacillus anthracis str. A2012] gi|167633188|ref|ZP_02391513.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0442] gi|167638782|ref|ZP_02397057.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0193] gi|170686326|ref|ZP_02877548.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0465] gi|170706443|ref|ZP_02896903.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0389] gi|177650448|ref|ZP_02933415.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0174] gi|228914350|ref|ZP_04077965.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229121324|ref|ZP_04250555.1| Flagellar basal-body rod protein flgG [Bacillus cereus 95/8201] gi|229600237|ref|YP_002866164.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0248] gi|254683274|ref|ZP_05147135.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. CNEVA-9066] gi|254723857|ref|ZP_05185643.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. A1055] gi|254734627|ref|ZP_05192339.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Western North America USA6153] gi|254741036|ref|ZP_05198724.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Kruger B] gi|254755279|ref|ZP_05207313.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Vollum] gi|254759816|ref|ZP_05211840.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Australia 94] gi|30256005|gb|AAP25640.1| putative flagellar basal-body rod protein [Bacillus anthracis str. Ames] gi|47502158|gb|AAT30834.1| putative flagellar basal-body rod protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178538|gb|AAT53914.1| flagellar basal-body rod protein, putative [Bacillus anthracis str. Sterne] gi|167513246|gb|EDR88617.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0193] gi|167531226|gb|EDR93904.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0442] gi|170128541|gb|EDS97408.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0389] gi|170670023|gb|EDT20764.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0465] gi|172083592|gb|EDT68652.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0174] gi|228662169|gb|EEL17778.1| Flagellar basal-body rod protein flgG [Bacillus cereus 95/8201] gi|228845344|gb|EEM90380.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264645|gb|ACQ46282.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0248] Length = 257 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 45/238 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTD 110 + A+ +++ G+ T ++ DF L+ G A F + S LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSDTDFLLDDGTAGTASFFVTSKNNETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L + SG + V+ + I+IP+ G K + G + IA + + Sbjct: 123 DRYLQTTSGAF-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKT 174 Query: 163 V--DMSQGFVRRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 V + + ++REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 175 VGAEANNRLIQRENKSFTLAEGNIADLP----NGVGTVKNYMLENSNVDMTKEMADLM 228 >gi|255523679|ref|ZP_05390645.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] gi|255512548|gb|EET88822.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] Length = 264 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 12/122 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASG 62 +A A + +L ++++N++N T G++ V F ++V G + + K +G Sbjct: 10 SAMNAQQDKLDSISNNIANESTTGYKREDVSFQDLVYETLNRKGYPNSGDNPKEPINGTG 69 Query: 63 ----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 + Y G T ++ DFA++G+ +F + P G R G F + ++G +V Sbjct: 70 VKATQWYRDNTQGPLRQTDSKTDFAIDGEGYFRVTLPNGTKAYERAGSFNIDNNGDIVDK 129 Query: 118 SG 119 G Sbjct: 130 DG 131 >gi|163738039|ref|ZP_02145455.1| S-adenosyl-L-homocysteine hydrolase [Phaeobacter gallaeciensis BS107] gi|161388655|gb|EDQ13008.1| S-adenosyl-L-homocysteine hydrolase [Phaeobacter gallaeciensis BS107] Length = 440 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 16/144 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL++++DN++N T G++ ++ F +V + V Sbjct: 10 ISSSLNAGVAGLSANASRLASISDNIANASTPGYKRVQTDFHSMVMSSSGGA-YSAGGVR 68 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES----------PRGIILTRDGRFKVTD 110 + L E G ++T D A+ G + S P+ ++LT F+ Sbjct: 69 TTNVRLIDERGPLVTTSNATDLAVRGRGMLPVASINEVETGATNPQ-MMLTTTASFRTNA 127 Query: 111 DGSLVSASG----KYPVLDMASVP 130 DG L + SG +P ++P Sbjct: 128 DGLLATESGLVLMGWPAQSDGTIP 151 >gi|116328474|ref|YP_798194.1| endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331206|ref|YP_800924.1| endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121218|gb|ABJ79261.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124895|gb|ABJ76166.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 287 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 57/264 (21%), Positives = 112/264 (42%), Gaps = 54/264 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEV---------VGAIKN---DI 52 G + + R+ +++N++N D F+ T+ F E+ VG + D Sbjct: 8 GANGMIIQQTRMDVISNNLANVDKTAFKRDTTVFKTFPELLLHRFDEDGVGKVPMGSFDT 67 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTR 102 + + G E Y E G+ T D L E A+F++ + RG L+R Sbjct: 68 APVVGKLGLGGEVNEVYTRFEQGAVKKTENPFDIMLQDRPGNEHPAFFSVMTNRGERLSR 127 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-------- 154 G F + +G LV+ G +P++ + PI++ + + F + E GE+ G++ Sbjct: 128 SGAFVMDTNGYLVTPQG-FPLMG-ENGPIRVARGN--FLIKENGEVWINGEIGNDPRNGT 183 Query: 155 ------------IATMGLYSVDMSQGFVRRENSGISPNIP----PTPLEDLSGVTVKRGF 198 + + + +V+ + + +E + P PTP E ++ +G+ Sbjct: 184 SLDKNRFETPVLLDRLKIRTVENPR-HLDKEGDSFYADTPESGEPTPFELKDEPSILQGY 242 Query: 199 LEDSNANSMYEMGQMIHLTQKFNS 222 LE SN + + EM +MI + + + + Sbjct: 243 LEASNVSVVTEMVEMIEVNRSYEA 266 >gi|84514833|ref|ZP_01002196.1| hypothetical protein SKA53_11453 [Loktanella vestfoldensis SKA53] gi|84510992|gb|EAQ07446.1| hypothetical protein SKA53_11453 [Loktanella vestfoldensis SKA53] Length = 1778 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 22/151 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISF--V 59 SF L + +S ++N++N T GF+ + +F ++ ++N S + Sbjct: 2 SFYTALTGLNGAQSDISATSNNIANVGTTGFKRSRAEFGDIFATSPLQNSSSSIGSGAIL 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKVTDDGSLVS 116 K+ ++ G+ S+ LD A+ G +FAL ++ ++ TR+G F V ++ ++V Sbjct: 62 KGVKQQFTQ--GNIASSLNALDMAISGQGFFALKPSQTSTQVVYTRNGSFNVDNNRNVVD 119 Query: 117 ASGK----YPVLDMASV---------PIQIP 134 +SG+ YPV + SV P+++P Sbjct: 120 SSGQFLLAYPVNEDGSVTAKDIDSAAPLRLP 150 >gi|306518947|ref|ZP_07405294.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-32g58] Length = 182 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 19/139 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T F A A + +L +++N++N+D+ G++ I +++S++V + N + S+ Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLVDEVLN----RPSYPT 56 Query: 61 SGKEYLS------------KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 +G + + E G+ T ++ + A++G+ +F + G TR+G F Sbjct: 57 NGNDISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYAYTRNGGFN 116 Query: 108 VTDDGSLVSASGKYPVLDM 126 + G +V +G +LD+ Sbjct: 117 IDGLGKIVDDNGN--ILDV 133 >gi|270262401|ref|ZP_06190672.1| flagellar hook protein FlgE [Serratia odorifera 4Rx13] gi|270043085|gb|EFA16178.1| flagellar hook protein FlgE [Serratia odorifera 4Rx13] Length = 410 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 66/135 (48%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ V F+++ + + K++ + + + G+ Sbjct: 12 AAATNLDVIGNNIANSATSGFKSGTVSFADMFAGSQVGLGVKVAGITQ-----NFKGGTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 T LD A+ + +F L+ G I +R+G+FK+ ++ +L + A+G P Sbjct: 67 TGTSRALDVAISDNGFFRLQDKDGGIFYSRNGQFKLDENRNLTNMQGLQLTGFPAAGSPP 126 Query: 123 VLDMAS--VPIQIPQ 135 + + VP+ IP+ Sbjct: 127 TIQQGANPVPLSIPE 141 >gi|237751739|ref|ZP_04582219.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] gi|229373105|gb|EEO23496.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] Length = 718 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 16/139 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A + L ++N++N +TVGF+ + F +++ +K G+ S Sbjct: 8 GVSGLQAHQVALDVESNNIANVNTVGFKYSRASFVDMLSQVKQIATSPYKNGLGGQNDFS 67 Query: 68 KEVGSFISTGTEL-------------DFALEGDAWFALESPRGII--LTRDGRFKVTDDG 112 +G I+ T++ D A+EGD +F + RG TRDG F G Sbjct: 68 VGMGVGINATTKVFSQGNTQNTDVKTDLAIEGDGFFIISRDRGETKNYTRDGEFLFDAKG 127 Query: 113 SLVSASGKYPVLDMASVPI 131 +LV+ +G Y V PI Sbjct: 128 NLVT-NGGYVVQGWNRPPI 145 >gi|15616299|ref|NP_244604.1| flagellar hook-basal body protein [Bacillus halodurans C-125] gi|10176361|dbj|BAB07456.1| flagellar hook-basal body protein [Bacillus halodurans C-125] Length = 280 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 28/160 (17%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-----------VASGK 63 L+++L T++ N++N++T G++ + FS+++ N ++ + V SG Sbjct: 15 LQKKLDTLSHNIANSNTTGYKRREASFSDLLFQQVN-TNKATQYETGRLTPNGIRVGSGA 73 Query: 64 EY----LSKEVGSFISTGTELDFALEG-DAWFALESPRG----IILTRDGRFKVTDDGS- 113 + L E G+ +T LDFA+ ++F +E+ LTRDG F +T + + Sbjct: 74 KVSQTALRMEQGTLTTTDRALDFAIANPSSFFEIETVVDGNPVTRLTRDGAFYLTANPNN 133 Query: 114 -----LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 LV+ +G Y +LD A I IP E + ++G + Sbjct: 134 DNLLQLVTQNGDY-LLDSAGNRINIPATFEEITLTDQGTL 172 >gi|320354325|ref|YP_004195664.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122827|gb|ADW18373.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 434 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 21/132 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 +Q++ G++ Q +S + +N++NT+T+GF+ + FS+++ + F + Sbjct: 3 IQSALYSGVSGLNTNSQAMSVIGNNLANTNTLGFKGSRSIFSDLLSSNV--------FGS 54 Query: 61 SGKEYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 G + + V G+F +T ++ D A+EG +F L+ +R G F+ Sbjct: 55 GGTSQVGRGVGLSIVDSIYSQGTFETTSSDTDVAIEGVGFFVLKEAGNDTAYYSRAGAFR 114 Query: 108 VTDDGSLVSASG 119 D+G LV+ G Sbjct: 115 FDDEGYLVNPEG 126 >gi|32267203|ref|NP_861235.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] gi|32263256|gb|AAP78301.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] Length = 718 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 16/143 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF- 58 G++ A + L ++N++N +TVGF+ + F +++ IK N + + F Sbjct: 8 GVSGMQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFS 67 Query: 59 --VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDG 112 + G + +K G+ +T + D A+EGD +F + RG TR+G F +G Sbjct: 68 VGLGVGIDATTKVFSQGNTQNTDVKTDVAIEGDGFFIISPDRGTTHNYTRNGEFLFDANG 127 Query: 113 SLVSASGKYPVLDMASVPIQIPQ 135 +LV+ +G Y V P++ + Sbjct: 128 NLVT-TGGYVVQGWVRPPLEAAE 149 >gi|251772412|gb|EES52979.1| flagellar basal-body rod protein FlgG [Leptospirillum ferrodiazotrophum] Length = 261 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 39/229 (17%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF----------VASGKEY 65 + L + +N++N +T G++ + F +++ + S V G Sbjct: 16 QANLDVITNNLANVNTTGYKRQRANFQDLMYQTMVPPGEASSLEGNQVPTGLQVGMGSRL 75 Query: 66 LSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 S + GS +T LD A++G+ +F ++ P G TRDG F + G +V+ G Sbjct: 76 ASVQKVFLQGSLRTTNNPLDVAIQGNGFFTVKLPDGRQAYTRDGTFNIDSHGRIVTPEG- 134 Query: 121 YPVLDMASVP-IQIPQKDEIFNVGEKGEIS----------QKGKVIATMGLYSVDMSQGF 169 + + P I +P+ + +V GE++ + G+++ + +S Sbjct: 135 -----LTTDPQIVVPKTAKSIHVAPDGEVTATVAGQSAPVKLGQLVLAQFINPAGLSS-- 187 Query: 170 VRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 R N + + P GV ++ GFLE SN N E+ M+ Sbjct: 188 -RGNNLFMETSASGKPTLSNPGVNGAGRLQSGFLEASNVNVAEELVNMV 235 >gi|78219159|gb|ABB38508.1| flagellar hook protein FlgE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 527 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---QKISFVASGKEYLSKEVGSFIS 75 ++ + +N++N +TVGF+ ++ F + + N Q V G Y GSF + Sbjct: 1 MNVLGNNIANVNTVGFKGARMDFEDFISQDVNTASGTRQVGRGVGIGTIYGDFSQGSFET 60 Query: 76 TGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASG 119 T D A+ G +FA+ SP+G TR G F+ +G LV G Sbjct: 61 TTEATDLAIGGRGFFAV-SPKGEETAYYTRAGNFRFDKEGYLVDPHG 106 >gi|85058011|ref|YP_453713.1| flagellar hook protein FlgE [Sodalis glossinidius str. 'morsitans'] gi|84778531|dbj|BAE73308.1| flagellar hook protein FlgE [Sodalis glossinidius str. 'morsitans'] Length = 404 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F G++ A Q L + +N++N TVGF++ F+++ ++ I + ++ Sbjct: 3 FAQGVSGLNAAAQALDVIGNNIANAQTVGFKSSSASFADMFS--ESMIGLGVQLAGVQQD 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G+ I+ ++ A+ G +F L G I +R+G F+ G +V+ GKY Sbjct: 61 F---NDGTMIAGAGNINMAIAGSGFFRLADNGGKIYYSRNGEFERNKYGEIVNKQGKY 115 >gi|92116886|ref|YP_576615.1| flagellar basal body FlaE [Nitrobacter hamburgensis X14] gi|91799780|gb|ABE62155.1| flagellar basal body FlaE [Nitrobacter hamburgensis X14] Length = 615 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 28/151 (18%) Query: 8 GLAAQ-LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG-KEY 65 GL AQ AL+ ++ N++N T G++ I FS+++ D VA G Y Sbjct: 13 GLQAQSFALQN----ISGNIANAQTTGYKGITTAFSDLI----PDSTAPNRQVAGGVTAY 64 Query: 66 LSKEV---GSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDD 111 + + G+ ++ A+ GD +F +++P G + TR G F+V + Sbjct: 65 ATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRVDNQPQFSGVTYYTRRGDFQVNAN 124 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 G+LV+++G Y + VP+ + + NV Sbjct: 125 GNLVNSAGYY----LMGVPVDPKTGNPLGNV 151 >gi|40890111|gb|AAR97400.1| nitrilase [uncultured organism] Length = 342 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL 100 I++ + FV + YLSKE + +S GT LD AL G + A+ SP G++L Sbjct: 202 IRHHALESGCFVVNATGYLSKEQVAQLSQGTSLDAALTGGCYTAIVSPEGVVL 254 >gi|323490138|ref|ZP_08095358.1| flagellar basal-body rod protein [Planococcus donghaensis MPA1U2] gi|323396186|gb|EGA89012.1| flagellar basal-body rod protein [Planococcus donghaensis MPA1U2] Length = 278 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 42/268 (15%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKF----SEVVGAIKND-----IDQKISFVASGK 63 +A ++ + +N+SN +T GF+ + F +++ A++N + I + +G Sbjct: 13 MANNRQQQILTNNLSNANTPGFKEDQTVFRAFPEQLIKAVENSKKGTIVPHNIGTLTTGV 72 Query: 64 EYLSKEVGSFIS-----TGTELDFAL-------------EGDAWFALESPRG-IILTRDG 104 Y + + SF+ TG + D AL +G FA+ + G + T++G Sbjct: 73 -YTQEGIPSFLQGPLKETGNQTDIALLDELLPTNPDTQQKGSMVFAVAAEDGEVRYTKNG 131 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSV 163 F V G L ++ G + VL PIQ+ D F V + GEI G + + Sbjct: 132 SFAVDTQGFLTTSDG-FSVLGEDLQPIQVGSAD--FTVQDNGEILLANGAQGDRLWVGYT 188 Query: 164 DMSQGFVRRENSGI----SPNIPPTPLED---LSGVT--VKRGFLEDSNANSMYEMGQMI 214 + Q FV+ + + +P P +++ L G +K+GF+E SN + M M+ Sbjct: 189 ENPQQFVKEGQNLLRWAGAPEASPQFIDNFDLLDGTPSFMKQGFVEQSNVDLTKTMTDMM 248 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + F S +I ++SM +A+ I Sbjct: 249 TTYRGFESNQKVIQAYDRSMEKAVNEIG 276 >gi|16125154|ref|NP_419718.1| flagellar hook protein [Caulobacter crescentus CB15] gi|221233884|ref|YP_002516320.1| flagellar hook protein FlgE [Caulobacter crescentus NA1000] gi|6226612|sp|P35806|FLGE_CAUCR RecName: Full=Flagellar hook protein flgE gi|3493243|gb|AAC33329.1| flagellar hook protein [Caulobacter crescentus CB15] gi|13422168|gb|AAK22886.1| flagellar hook protein [Caulobacter crescentus CB15] gi|220963056|gb|ACL94412.1| flagellar hook protein FlgE [Caulobacter crescentus NA1000] Length = 591 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 9/122 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVASGKEYL 66 G++ +A L+ ++DN++N +TVGF+ FS +V KN A +++ Sbjct: 10 GVSGLIANSSALAAISDNIANVNTVGFKRSTSNFSTLVTSGNKNQTYSAGGVKAQTHQFI 69 Query: 67 SKEVGSFISTGTELDFALEGDAWF-ALESPRGII------LTRDGRFKVTDDGSLVSASG 119 S++ G ST + LD ++ G +F E P + TR G F++ + G L + +G Sbjct: 70 SQQ-GLTQSTTSNLDISISGAGFFVTTEKPENLTATDTRSFTRAGSFQLDNLGYLRNDAG 128 Query: 120 KY 121 Y Sbjct: 129 LY 130 >gi|16129039|ref|NP_415594.1| flagellar hook protein [Escherichia coli str. K-12 substr. MG1655] gi|89107922|ref|AP_001702.1| flagellar hook protein [Escherichia coli str. K-12 substr. W3110] gi|170080727|ref|YP_001730047.1| flagellar hook protein [Escherichia coli str. K-12 substr. DH10B] gi|188492271|ref|ZP_02999541.1| flagellar hook protein FlgE [Escherichia coli 53638] gi|238900330|ref|YP_002926126.1| flagellar hook protein [Escherichia coli BW2952] gi|256023226|ref|ZP_05437091.1| flagellar hook protein FlgE [Escherichia sp. 4_1_40B] gi|300950171|ref|ZP_07164116.1| flagellar hook protein FlgE [Escherichia coli MS 116-1] gi|300954384|ref|ZP_07166838.1| flagellar hook protein FlgE [Escherichia coli MS 175-1] gi|301029709|ref|ZP_07192763.1| flagellar hook protein FlgE [Escherichia coli MS 196-1] gi|301644988|ref|ZP_07244954.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|307137711|ref|ZP_07497067.1| flagellar hook protein FlgE [Escherichia coli H736] gi|331641620|ref|ZP_08342755.1| flagellar hook protein FlgE [Escherichia coli H736] gi|2494529|sp|P75937|FLGE_ECOLI RecName: Full=Flagellar hook protein flgE gi|1787316|gb|AAC74160.1| flagellar hook protein [Escherichia coli str. K-12 substr. MG1655] gi|85674830|dbj|BAA35885.2| flagellar hook protein [Escherichia coli str. K12 substr. W3110] gi|169888562|gb|ACB02269.1| flagellar hook protein [Escherichia coli str. K-12 substr. DH10B] gi|188487470|gb|EDU62573.1| flagellar hook protein FlgE [Escherichia coli 53638] gi|238861108|gb|ACR63106.1| flagellar hook protein [Escherichia coli BW2952] gi|260449784|gb|ACX40206.1| flagellar basal body FlaE domain protein [Escherichia coli DH1] gi|299877397|gb|EFI85608.1| flagellar hook protein FlgE [Escherichia coli MS 196-1] gi|300318620|gb|EFJ68404.1| flagellar hook protein FlgE [Escherichia coli MS 175-1] gi|300450518|gb|EFK14138.1| flagellar hook protein FlgE [Escherichia coli MS 116-1] gi|301076717|gb|EFK91523.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|309701348|emb|CBJ00649.1| flagellar hook protein FlgE [Escherichia coli ETEC H10407] gi|315135708|dbj|BAJ42867.1| flagellar hook protein FlgE [Escherichia coli DH1] gi|315618246|gb|EFU98836.1| flagellar hook protein flgE [Escherichia coli 3431] gi|323937816|gb|EGB34080.1| fagellar hook-basal body protein [Escherichia coli E1520] gi|323942545|gb|EGB38712.1| fagellar hook-basal body protein [Escherichia coli E482] gi|331038418|gb|EGI10638.1| flagellar hook protein FlgE [Escherichia coli H736] gi|332342622|gb|AEE55956.1| flagellar hook protein FlgE [Escherichia coli UMNK88] Length = 402 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|209773380|gb|ACI85002.1| flagellar hook protein FlgE [Escherichia coli] Length = 401 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|320173529|gb|EFW48725.1| Flagellar hook protein FlgE [Shigella dysenteriae CDC 74-1112] Length = 402 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|297517866|ref|ZP_06936252.1| flagellar hook protein FlgE [Escherichia coli OP50] Length = 401 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P I Sbjct: 127 TIQQGANPTNI 137 >gi|229917022|ref|YP_002885668.1| hypothetical protein EAT1b_1296 [Exiguobacterium sp. AT1b] gi|229468451|gb|ACQ70223.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sp. AT1b] Length = 260 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 24/161 (14%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----------DIDQKISFVASGK 63 L+++L N++N DTVGF+ + F+ ++ N D I G Sbjct: 14 LQRQLDVTGHNIANVDTVGFKRQQGHFASLLSQAYNNQPRPEFEVGRDTPNGIRIGVGGH 73 Query: 64 -EYLSKE--VGSFISTGTELDFALEGD-AWFALESPRGIILTRDG--RFKVTDDGSLVSA 117 ++++ +G +T LD L+ +F +++P G+ +TR G + V D+ +LV Sbjct: 74 VADITQQFNIGQVRTTDRGLDVFLKASRQFFVVDTPNGVGVTRSGNMQLSVGDETTLVDV 133 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 +G P+L PI +P N I Q G V+A++ Sbjct: 134 NGN-PLLGDDGNPITMP------NDATNQRIRQDGVVVASV 167 >gi|82544458|ref|YP_408405.1| flagellar hook protein FlgE [Shigella boydii Sb227] gi|81245869|gb|ABB66577.1| hook protein [Shigella boydii Sb227] gi|320186977|gb|EFW61690.1| Flagellar hook protein FlgE [Shigella flexneri CDC 796-83] gi|332094030|gb|EGI99082.1| flagellar hook protein flgE [Shigella boydii 3594-74] Length = 402 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|82777309|ref|YP_403658.1| flagellar hook protein FlgE [Shigella dysenteriae Sd197] gi|309788143|ref|ZP_07682749.1| flagellar hook protein flgE [Shigella dysenteriae 1617] gi|81241457|gb|ABB62167.1| hook protein [Shigella dysenteriae Sd197] gi|308923995|gb|EFP69496.1| flagellar hook protein flgE [Shigella dysenteriae 1617] Length = 402 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|15801193|ref|NP_287210.1| flagellar hook protein FlgE [Escherichia coli O157:H7 EDL933] gi|15830708|ref|NP_309481.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai] gi|168747148|ref|ZP_02772170.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113] gi|168758631|ref|ZP_02783638.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401] gi|168767735|ref|ZP_02792742.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486] gi|168773921|ref|ZP_02798928.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196] gi|168783606|ref|ZP_02808613.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076] gi|168790011|ref|ZP_02815018.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869] gi|168802021|ref|ZP_02827028.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508] gi|195935466|ref|ZP_03080848.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4024] gi|208809224|ref|ZP_03251561.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206] gi|208814886|ref|ZP_03256065.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045] gi|208822570|ref|ZP_03262889.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042] gi|209395987|ref|YP_002269922.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115] gi|254792458|ref|YP_003077295.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14359] gi|261227019|ref|ZP_05941300.1| flagellar hook protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256253|ref|ZP_05948786.1| flagellar hook protein [Escherichia coli O157:H7 str. FRIK966] gi|291282096|ref|YP_003498914.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|12514614|gb|AAG55822.1|AE005317_11 flagellar biosynthesis, hook protein [Escherichia coli O157:H7 str. EDL933] gi|13360918|dbj|BAB34877.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai] gi|187770405|gb|EDU34249.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196] gi|188018069|gb|EDU56191.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113] gi|188999079|gb|EDU68065.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076] gi|189354568|gb|EDU72987.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401] gi|189363151|gb|EDU81570.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486] gi|189370482|gb|EDU88898.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869] gi|189375951|gb|EDU94367.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508] gi|208729025|gb|EDZ78626.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206] gi|208731534|gb|EDZ80222.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045] gi|208738055|gb|EDZ85738.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042] gi|209157387|gb|ACI34820.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115] gi|209773378|gb|ACI85001.1| flagellar hook protein FlgE [Escherichia coli] gi|209773382|gb|ACI85003.1| flagellar hook protein FlgE [Escherichia coli] gi|209773384|gb|ACI85004.1| flagellar hook protein FlgE [Escherichia coli] gi|209773386|gb|ACI85005.1| flagellar hook protein FlgE [Escherichia coli] gi|254591858|gb|ACT71219.1| flagellar hook protein [Escherichia coli O157:H7 str. TW14359] gi|290761969|gb|ADD55930.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|320189759|gb|EFW64415.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC1212] gi|320637527|gb|EFX07327.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. G5101] gi|320643088|gb|EFX12289.1| flagellar hook protein FlgE [Escherichia coli O157:H- str. 493-89] gi|320648546|gb|EFX17201.1| flagellar hook protein FlgE [Escherichia coli O157:H- str. H 2687] gi|320653860|gb|EFX21934.1| flagellar hook protein FlgE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659340|gb|EFX26909.1| flagellar hook protein FlgE [Escherichia coli O55:H7 str. USDA 5905] gi|320664475|gb|EFX31626.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. LSU-61] gi|326339298|gb|EGD63112.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. 1125] gi|326344741|gb|EGD68489.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. 1044] Length = 401 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|74311638|ref|YP_310057.1| flagellar hook protein FlgE [Shigella sonnei Ss046] gi|157157539|ref|YP_001462310.1| flagellar hook protein FlgE [Escherichia coli E24377A] gi|191168462|ref|ZP_03030250.1| flagellar hook protein FlgE [Escherichia coli B7A] gi|193064513|ref|ZP_03045593.1| flagellar hook protein FlgE [Escherichia coli E22] gi|194438060|ref|ZP_03070153.1| flagellar hook protein FlgE [Escherichia coli 101-1] gi|209918330|ref|YP_002292414.1| flagellar hook protein FlgE [Escherichia coli SE11] gi|218694610|ref|YP_002402277.1| flagellar hook protein FlgE [Escherichia coli 55989] gi|253773900|ref|YP_003036731.1| flagellar hook protein FlgE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161182|ref|YP_003044290.1| flagellar hook protein FlgE [Escherichia coli B str. REL606] gi|256018667|ref|ZP_05432532.1| flagellar hook protein FlgE [Shigella sp. D9] gi|260843316|ref|YP_003221094.1| flagellar hook protein FlgE [Escherichia coli O103:H2 str. 12009] gi|260854559|ref|YP_003228450.1| flagellar hook protein FlgE [Escherichia coli O26:H11 str. 11368] gi|260867439|ref|YP_003233841.1| flagellar hook protein FlgE [Escherichia coli O111:H- str. 11128] gi|293433366|ref|ZP_06661794.1| flagellar hook protein FlgE [Escherichia coli B088] gi|300816778|ref|ZP_07096998.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|300821143|ref|ZP_07101292.1| flagellar hook protein FlgE [Escherichia coli MS 119-7] gi|300902467|ref|ZP_07120449.1| flagellar hook protein FlgE [Escherichia coli MS 84-1] gi|300922602|ref|ZP_07138702.1| flagellar hook protein FlgE [Escherichia coli MS 182-1] gi|300928372|ref|ZP_07143906.1| flagellar hook protein FlgE [Escherichia coli MS 187-1] gi|301304985|ref|ZP_07211087.1| flagellar hook protein FlgE [Escherichia coli MS 124-1] gi|301328554|ref|ZP_07221615.1| flagellar hook protein FlgE [Escherichia coli MS 78-1] gi|309798070|ref|ZP_07692445.1| flagellar hook protein FlgE [Escherichia coli MS 145-7] gi|331667476|ref|ZP_08368340.1| flagellar hook protein FlgE [Escherichia coli TA271] gi|331676867|ref|ZP_08377563.1| flagellar hook protein FlgE [Escherichia coli H591] gi|332279736|ref|ZP_08392149.1| flagellar hook protein FlgE [Shigella sp. D9] gi|73855115|gb|AAZ87822.1| flagellar hook protein [Shigella sonnei Ss046] gi|157079569|gb|ABV19277.1| flagellar hook protein FlgE [Escherichia coli E24377A] gi|190901481|gb|EDV61242.1| flagellar hook protein FlgE [Escherichia coli B7A] gi|192927765|gb|EDV82379.1| flagellar hook protein FlgE [Escherichia coli E22] gi|194422996|gb|EDX38990.1| flagellar hook protein FlgE [Escherichia coli 101-1] gi|209911589|dbj|BAG76663.1| flagellar hook protein FlgE [Escherichia coli SE11] gi|218351342|emb|CAU97048.1| flagellar hook protein [Escherichia coli 55989] gi|253324944|gb|ACT29546.1| flagellar basal body FlaE domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973083|gb|ACT38754.1| flagellar hook protein E [Escherichia coli B str. REL606] gi|253977297|gb|ACT42967.1| flagellar hook protein E [Escherichia coli BL21(DE3)] gi|257753208|dbj|BAI24710.1| flagellar hook protein FlgE [Escherichia coli O26:H11 str. 11368] gi|257758463|dbj|BAI29960.1| flagellar hook protein FlgE [Escherichia coli O103:H2 str. 12009] gi|257763795|dbj|BAI35290.1| flagellar hook protein FlgE [Escherichia coli O111:H- str. 11128] gi|291324185|gb|EFE63607.1| flagellar hook protein FlgE [Escherichia coli B088] gi|300405499|gb|EFJ89037.1| flagellar hook protein FlgE [Escherichia coli MS 84-1] gi|300421079|gb|EFK04390.1| flagellar hook protein FlgE [Escherichia coli MS 182-1] gi|300463630|gb|EFK27123.1| flagellar hook protein FlgE [Escherichia coli MS 187-1] gi|300526442|gb|EFK47511.1| flagellar hook protein FlgE [Escherichia coli MS 119-7] gi|300530552|gb|EFK51614.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|300839703|gb|EFK67463.1| flagellar hook protein FlgE [Escherichia coli MS 124-1] gi|300844946|gb|EFK72706.1| flagellar hook protein FlgE [Escherichia coli MS 78-1] gi|308118353|gb|EFO55615.1| flagellar hook protein FlgE [Escherichia coli MS 145-7] gi|313848602|emb|CAQ31597.2| flagellar hook protein FlgE, subunit of Flagellum [Escherichia coli BL21(DE3)] gi|315253877|gb|EFU33845.1| flagellar hook protein FlgE [Escherichia coli MS 85-1] gi|323156883|gb|EFZ43017.1| flagellar hook protein flgE [Escherichia coli EPECa14] gi|323163758|gb|EFZ49577.1| flagellar hook protein flgE [Escherichia coli E128010] gi|323165584|gb|EFZ51371.1| flagellar hook protein flgE [Shigella sonnei 53G] gi|323175693|gb|EFZ61287.1| flagellar hook protein flgE [Escherichia coli 1180] gi|323185801|gb|EFZ71162.1| flagellar hook protein flgE [Escherichia coli 1357] gi|323947622|gb|EGB43626.1| fagellar hook-basal body protein [Escherichia coli H120] gi|323962675|gb|EGB58253.1| fagellar hook-basal body protein [Escherichia coli H489] gi|323973335|gb|EGB68524.1| fagellar hook-basal body protein [Escherichia coli TA007] gi|324017420|gb|EGB86639.1| flagellar hook protein FlgE [Escherichia coli MS 117-3] gi|324117353|gb|EGC11260.1| fagellar hook-basal body protein [Escherichia coli E1167] gi|331065061|gb|EGI36956.1| flagellar hook protein FlgE [Escherichia coli TA271] gi|331075556|gb|EGI46854.1| flagellar hook protein FlgE [Escherichia coli H591] gi|332102088|gb|EGJ05434.1| flagellar hook protein FlgE [Shigella sp. D9] Length = 401 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P I Sbjct: 127 TIQQGANPTNI 137 >gi|300918678|ref|ZP_07135259.1| flagellar hook protein FlgE [Escherichia coli MS 115-1] gi|300414172|gb|EFJ97482.1| flagellar hook protein FlgE [Escherichia coli MS 115-1] Length = 401 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P I Sbjct: 127 TIQQGANPTNI 137 >gi|311280017|ref|YP_003942248.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] gi|308749212|gb|ADO48964.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] Length = 402 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRALDVAISQNGFFRLVDSNGSVYYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P+ + Sbjct: 127 TIQQGANPVAL 137 >gi|227328339|ref|ZP_03832363.1| flagellar basal body rod protein FlgF [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 251 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 34/247 (13%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVASGKEY 65 +G A+Q +LE++ T A+N++N T GFR + S + N + + V + Sbjct: 9 MGGASQ-SLEKQAIT-ANNLANASTPGFR---AQLSALRAVPVNGLTLPTRTLVVASTPG 63 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG +D AL ++W A+++ G TR+G ++ DG L + G+ + Sbjct: 64 ADMTEGVMNYTGRAMDVALPKESWLAVQTANGGEAYTRNGNMEINADGQL-TIQGRVVMG 122 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGI- 177 D PI IP + +I ++ G IS IA +G L V + V R + G+ Sbjct: 123 DGG--PIDIPPQAQI-SISPDGTISALNAGDPPNTIAQLGRLKLVKATGQEVERSDDGLF 179 Query: 178 ---------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITT 225 N+ L++ V + G +E SN N++ M MI ++F + + Sbjct: 180 RLTQQAQQQRGNV----LQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKVIS 235 Query: 226 LIDENEK 232 +D+N + Sbjct: 236 SVDDNAQ 242 >gi|296283217|ref|ZP_06861215.1| flagellar hook protein FlgE [Citromicrobium bathyomarinum JL354] Length = 412 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG-----KEYLSKEVGSF 73 ++TVADN++N +TVG++ + F +V D K S+ A G + +SK+ G Sbjct: 1 MATVADNITNINTVGYKGAEADFRTLV----TDGRLKSSYSAGGVAAAPRAMISKQ-GLL 55 Query: 74 ISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASGKY 121 + ++ D ++G +F + GI TR G F+ + G L + G + Sbjct: 56 QAASSQTDLGIDGGGFFVTRTGSGADSGIAFTRAGAFRPDEQGYLRNTGGYF 107 >gi|149191154|ref|ZP_01869412.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148834992|gb|EDL51971.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 244 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 37/217 (17%) Query: 23 ADNMSNTDTVGFRTI-------KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 A+N+S+ DT+GF+ + +++ S + ++ + + I+ A G++ I Sbjct: 23 ANNLSHADTIGFKALMEHSSPMRLEGSGFLTSVTSRTNSSINNFAQGED---------IR 73 Query: 76 TGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 T LD ++ GD + LE G + TR G F++ +G L G+ V+ + P+ Sbjct: 74 TERPLDVSINGDGFITLEGLDGEPNELYTRAGNFRLDGNGQLY--LGERRVMSIEG-PMI 130 Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM-SQGFVRRENSGIS--------PNIPP 183 +P E V G IS V G SV++ + V+ E ++ P Sbjct: 131 LPDF-EFITVSANGLIS----VTPIGGEASVEVGALKLVKPEYDEMTMHASGHFVPKGGG 185 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ED + V V+ G+LE SN +S+ E+ ++ LT+++ Sbjct: 186 VLAEDFT-VQVRSGYLEASNVSSLEELVSIMSLTRQY 221 >gi|86747891|ref|YP_484387.1| flagellar hook protein FlgE [Rhodopseudomonas palustris HaA2] gi|86570919|gb|ABD05476.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 421 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 6/112 (5%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 A L+ ++DN++N+ TVG++T F S V AS ++ + G Sbjct: 16 AQSSALAMISDNIANSSTVGYKTSSASFESLVTNTSGASSYSSGGVTASATSNITTQ-GL 74 Query: 73 FISTGTELDFALEGDAWFALESPR---GIILTRDGRFKVTDDGSLVSASGKY 121 ST T + A++G+ +F + + + TR+G F + DG LV+ +G Y Sbjct: 75 LTSTTTATNIAIQGNGFFPVTTSLTGGSTLYTRNGAFTIDSDGYLVN-NGAY 125 >gi|332703535|ref|ZP_08423623.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] gi|332553684|gb|EGJ50728.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] Length = 556 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 5/117 (4%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVASGKE 64 G+ A ++ + +N++N T+GF+ ++ F +V+ I Q V+ G Sbjct: 10 GVTGLKAHGDKMGVIGNNIANVSTIGFKGARMFFQDVISQDIPTAAGIGQVGRGVSIGAI 69 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSASG 119 Y G F +TG D A+ G +F ++ TR G F+ DG LV +G Sbjct: 70 YADYTQGGFETTGEATDLAIGGKGFFIVKKKNEDTSYYTRAGNFRFDKDGYLVDPNG 126 >gi|271500066|ref|YP_003333091.1| fagellar hook-basal body protein [Dickeya dadantii Ech586] gi|270343621|gb|ACZ76386.1| fagellar hook-basal body protein [Dickeya dadantii Ech586] Length = 399 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 71/145 (48%), Gaps = 18/145 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ TVGF+ + F+++ + K++ V + Sbjct: 2 SFSQAVSGLNAASSNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTKVASVL--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS------ 116 ++ + GS +T LD A+ G+ ++ L G ++ +R+G+F + ++V+ Sbjct: 60 DFGN---GSINNTSRALDVAINGNGFYRLLDTNGSVVYSRNGQFTLDSSRNIVNSQGLQL 116 Query: 117 ----ASGKYPVLDMASVPI--QIPQ 135 A+G P + + P+ IP+ Sbjct: 117 TGYPATGTPPTIQQGASPVALSIPE 141 >gi|307310146|ref|ZP_07589796.1| fagellar hook-basal body protein [Escherichia coli W] gi|306909864|gb|EFN40358.1| fagellar hook-basal body protein [Escherichia coli W] gi|315060354|gb|ADT74681.1| flagellar hook protein [Escherichia coli W] gi|320200972|gb|EFW75556.1| Flagellar hook protein FlgE [Escherichia coli EC4100B] gi|323379085|gb|ADX51353.1| fagellar hook-basal body protein [Escherichia coli KO11] Length = 402 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|242309658|ref|ZP_04808813.1| flagellar hook protein [Helicobacter pullorum MIT 98-5489] gi|239523659|gb|EEQ63525.1| flagellar hook protein [Helicobacter pullorum MIT 98-5489] Length = 750 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 14/126 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----------IDQKIS 57 G++ A + L ++N++N +T GF+ + FS +V K ++ Sbjct: 8 GVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRSATIPYAGYGGVNDYSV 67 Query: 58 FVASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGS 113 + +G E +K GS +T + D ALEG+ F + + G + TRDG F G+ Sbjct: 68 GLGTGIETTTKVFSQGSLQNTDRKADLALEGNGMFVVSNNGGFTNMYTRDGAFSFDAVGN 127 Query: 114 LVSASG 119 LV+ SG Sbjct: 128 LVTTSG 133 >gi|85706142|ref|ZP_01037237.1| flagellar hook protein FlgE, putative [Roseovarius sp. 217] gi|85669306|gb|EAQ24172.1| flagellar hook protein FlgE, putative [Roseovarius sp. 217] Length = 448 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 20/133 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N +A A RL+T++DN++N+ T G+R ++ F +V + + S+ A Sbjct: 18 ISSSLNASVAGLNANATRLATISDNIANSSTFGYRRVEADFESLVISGRGG-----SYSA 72 Query: 61 SG----KEYLSKEVGSFISTGTELDFALEGDAWFALE----------SPRGIILTRDGRF 106 G + L + GS +S+ D A+ + + P+ ++LT G F Sbjct: 73 GGVRASTQRLIDQGGSIVSSSNPTDLAVRDRGFLPVARVTDLTVSNGDPQ-MLLTTTGSF 131 Query: 107 KVTDDGSLVSASG 119 + G LV+ SG Sbjct: 132 RTDPQGRLVTESG 144 >gi|331652129|ref|ZP_08353148.1| flagellar hook protein FlgE [Escherichia coli M718] gi|331050407|gb|EGI22465.1| flagellar hook protein FlgE [Escherichia coli M718] Length = 402 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|115522802|ref|YP_779713.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisA53] gi|115516749|gb|ABJ04733.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris BisA53] Length = 421 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 11/113 (9%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK----EVG 71 Q L+ ++DN++N+ TVG++T F +V S+ + G LSK G Sbjct: 18 SQSLAMISDNIANSQTVGYKTTSALFDSLV----TSSSSASSYSSGGVTVLSKSNISSQG 73 Query: 72 SFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASGKY 121 +T + D + G+ +F + + + TR G F + D G +V+ASG Y Sbjct: 74 LLTTTTSSTDIGISGNGFFPVSTALNGGSTLYTRAGSFTIDDSGYMVNASGAY 126 >gi|301023263|ref|ZP_07187060.1| flagellar hook protein FlgE [Escherichia coli MS 69-1] gi|300397108|gb|EFJ80646.1| flagellar hook protein FlgE [Escherichia coli MS 69-1] Length = 401 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|331662482|ref|ZP_08363405.1| flagellar hook protein FlgE [Escherichia coli TA143] gi|284920899|emb|CBG33962.1| flagellar hook protein FlgE [Escherichia coli 042] gi|331060904|gb|EGI32868.1| flagellar hook protein FlgE [Escherichia coli TA143] Length = 402 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|196039147|ref|ZP_03106454.1| putative flagellar basal-body rod protein [Bacillus cereus NVH0597-99] gi|196030292|gb|EDX68892.1| putative flagellar basal-body rod protein [Bacillus cereus NVH0597-99] Length = 249 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 45/228 (19%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T ++ DF L+ G A F + S LTRDG F + D L + SG Sbjct: 65 VNLVQGNIQMTNSDTDFLLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSV--DMSQGFV 170 + V+ + I+IP+ G K + G + IA + +V +++ + Sbjct: 125 F-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKTVGAEVNNRLI 176 Query: 171 RRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 +REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 177 QRENKSFTLAEGNIADLP----NGVGTVKNYMLENSNVDMTKEMADLM 220 >gi|157160603|ref|YP_001457921.1| flagellar hook protein FlgE [Escherichia coli HS] gi|170020528|ref|YP_001725482.1| flagellar hook protein FlgE [Escherichia coli ATCC 8739] gi|312971213|ref|ZP_07785391.1| flagellar hook protein flgE [Escherichia coli 1827-70] gi|157066283|gb|ABV05538.1| flagellar hook protein FlgE [Escherichia coli HS] gi|169755456|gb|ACA78155.1| flagellar basal body FlaE domain protein [Escherichia coli ATCC 8739] gi|310336415|gb|EFQ01601.1| flagellar hook protein flgE [Escherichia coli 1827-70] Length = 402 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|222032829|emb|CAP75568.1| flagellar hook protein flgE [Escherichia coli LF82] gi|312945638|gb|ADR26465.1| flagellar hook protein FlgE [Escherichia coli O83:H1 str. NRG 857C] Length = 401 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|1294806|gb|AAB06803.1| hook protein [Treponema denticola] Length = 184 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 26/113 (23%) Query: 25 NMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS----KEVG--------- 71 N++N +T GF+ +V F ++ I Q++S A E L KEVG Sbjct: 1 NVANVNTTGFKRGRVNFQDL-------ISQQLSGAARPTEELGGVNPKEVGLGMMVASID 53 Query: 72 ------SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + +TG D A++G+ +F L+ TR G F + +G+LV+ + Sbjct: 54 TIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGIDKEGTLVNPA 106 >gi|323967017|gb|EGB62443.1| fagellar hook-basal body protein [Escherichia coli M863] gi|327253475|gb|EGE65113.1| flagellar hook protein flgE [Escherichia coli STEC_7v] Length = 401 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P I Sbjct: 127 TIQQGANPTNI 137 >gi|331682578|ref|ZP_08383197.1| flagellar hook protein FlgE [Escherichia coli H299] gi|331080209|gb|EGI51388.1| flagellar hook protein FlgE [Escherichia coli H299] Length = 401 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|301051140|ref|ZP_07197970.1| flagellar hook protein FlgE [Escherichia coli MS 185-1] gi|300297161|gb|EFJ53546.1| flagellar hook protein FlgE [Escherichia coli MS 185-1] Length = 401 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P I Sbjct: 127 TIQQGANPTNI 137 >gi|218704484|ref|YP_002412003.1| flagellar hook protein FlgE [Escherichia coli UMN026] gi|293404360|ref|ZP_06648354.1| flgE [Escherichia coli FVEC1412] gi|298380140|ref|ZP_06989745.1| flagellar hook protein FlgE [Escherichia coli FVEC1302] gi|300899595|ref|ZP_07117834.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] gi|218431581|emb|CAR12460.1| flagellar hook protein [Escherichia coli UMN026] gi|291428946|gb|EFF01971.1| flgE [Escherichia coli FVEC1412] gi|298279838|gb|EFI21346.1| flagellar hook protein FlgE [Escherichia coli FVEC1302] gi|300356866|gb|EFJ72736.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] Length = 401 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|218689029|ref|YP_002397241.1| flagellar hook protein FlgE [Escherichia coli ED1a] gi|218426593|emb|CAR07421.1| flagellar hook protein [Escherichia coli ED1a] Length = 401 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|91210228|ref|YP_540214.1| flagellar hook protein FlgE [Escherichia coli UTI89] gi|117623262|ref|YP_852175.1| flagellar hook protein FlgE [Escherichia coli APEC O1] gi|215486285|ref|YP_002328716.1| flagellar hook protein FlgE [Escherichia coli O127:H6 str. E2348/69] gi|218557958|ref|YP_002390871.1| flagellar hook protein FlgE [Escherichia coli S88] gi|237706938|ref|ZP_04537419.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|312968850|ref|ZP_07783057.1| flagellar hook protein flgE [Escherichia coli 2362-75] gi|91071802|gb|ABE06683.1| flagellar biosynthesis, hook protein [Escherichia coli UTI89] gi|115512386|gb|ABJ00461.1| flagellar biosynthesis, hook protein FlgE [Escherichia coli APEC O1] gi|215264357|emb|CAS08714.1| flagellar hook protein [Escherichia coli O127:H6 str. E2348/69] gi|218364727|emb|CAR02417.1| flagellar hook protein [Escherichia coli S88] gi|226898148|gb|EEH84407.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|294491293|gb|ADE90049.1| flagellar hook protein FlgE [Escherichia coli IHE3034] gi|307627454|gb|ADN71758.1| flagellar hook protein FlgE [Escherichia coli UM146] gi|312286252|gb|EFR14165.1| flagellar hook protein flgE [Escherichia coli 2362-75] gi|315287369|gb|EFU46780.1| flagellar hook protein FlgE [Escherichia coli MS 110-3] gi|323953238|gb|EGB49104.1| fagellar hook-basal body protein [Escherichia coli H252] gi|323957900|gb|EGB53612.1| fagellar hook-basal body protein [Escherichia coli H263] Length = 401 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|194432446|ref|ZP_03064733.1| flagellar hook protein FlgE [Shigella dysenteriae 1012] gi|194419333|gb|EDX35415.1| flagellar hook protein FlgE [Shigella dysenteriae 1012] gi|332092817|gb|EGI97885.1| flagellar hook protein flgE [Shigella dysenteriae 155-74] Length = 401 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|307718606|ref|YP_003874138.1| flagellar hook protein [Spirochaeta thermophila DSM 6192] gi|306532331|gb|ADN01865.1| flagellar hook protein [Spirochaeta thermophila DSM 6192] Length = 462 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 26/137 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N+SN +T GF+ +V F ++ I Q +S A Sbjct: 1 MMRSLYAGVSGLQNHQIRMDVIGNNISNVNTTGFKKGRVNFHDM-------ISQTLSGAA 53 Query: 61 SGKEYLS----KEV---------------GSFISTGTELDFALEGDAWFALESPRGIILT 101 E + K+V GS +TG D A++G+ +F L T Sbjct: 54 RPTEEVGGVNPKQVGLGMTIASIDTIHTQGSLQTTGVMTDVAIQGEGFFILRKGDRSFYT 113 Query: 102 RDGRFKVTDDGSLVSAS 118 R G F + ++G LV+ + Sbjct: 114 RAGVFGLDEEGYLVNPA 130 >gi|224419257|ref|ZP_03657263.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] gi|253826972|ref|ZP_04869857.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|313142759|ref|ZP_07804952.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|253510378|gb|EES89037.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|313131790|gb|EFR49407.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] Length = 751 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 14/126 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------NDIDQKIS 57 G++ A + L ++N++N +T GF+ + FS +V K ++ Sbjct: 8 GVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRAATIPYAGYGGVNDYSV 67 Query: 58 FVASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGS 113 + +G E +K GS +T + D ALEG+ F + + G + TRDG F G+ Sbjct: 68 GLGTGIETTTKIFSQGSLQNTDRKADLALEGNGMFVVSNNGGFTNMYTRDGAFSFDAVGN 127 Query: 114 LVSASG 119 LV+ SG Sbjct: 128 LVTTSG 133 >gi|49480334|ref|YP_035891.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331890|gb|AAT62536.1| flagellar basal-body rod protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 257 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 45/238 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTD 110 + A+ +++ G+ T ++ DF L+ G A F + S LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSDTDFLLDDGTAGTASFFVTSKNNETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L + SG + V+ I+IP+ G K + G + IA + + Sbjct: 123 DRYLQTTSGAF-VMGENHERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKT 174 Query: 163 V--DMSQGFVRRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 V + + ++REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 175 VGAEANNRLIQRENKSFTLAEGNIADLP----NGVGTVKNYMLENSNVDMTKEMADLM 228 >gi|296502373|ref|YP_003664073.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis BMB171] gi|296323425|gb|ADH06353.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis BMB171] Length = 246 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 35/223 (15%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 5 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 61 Query: 66 LSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T + DF L+ A +F LTRDG F + D L ++SG Sbjct: 62 VNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQTSSGA 121 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQG--FVRREN 174 + V+ + I+IP+ ++ V G E++Q IA + +VD V+REN Sbjct: 122 F-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDAETNARLVQREN 177 Query: 175 SGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + NI P + +G+ VK LE+SN + EM ++ Sbjct: 178 KSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 217 >gi|293605003|ref|ZP_06687399.1| flagellar hook protein FlgE [Achromobacter piechaudii ATCC 43553] gi|292816608|gb|EFF75693.1| flagellar hook protein FlgE [Achromobacter piechaudii ATCC 43553] Length = 489 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K++ + + Sbjct: 3 FGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKVAAI--NQR 60 Query: 65 YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG--- 119 + V G E D A++G F L G ++ +R+G F V + +V+A G Sbjct: 61 FTVGTV---QGGGGEYDIAIDGAKGMFRLTDQSGAVMYSRNGEFLVDKNNFIVNAQGYRL 117 Query: 120 -KYPVLDMASVPIQI 133 YP + + P+++ Sbjct: 118 TGYPAGAIGANPVEL 132 >gi|315296707|gb|EFU56002.1| flagellar hook protein FlgE [Escherichia coli MS 16-3] gi|320196442|gb|EFW71065.1| Flagellar hook protein FlgE [Escherichia coli WV_060327] Length = 401 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|325109020|ref|YP_004270088.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] gi|324969288|gb|ADY60066.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] Length = 572 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 16/131 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDID- 53 + TS N GLA EQ + + +N++N T GF+ V F + VG+ + Sbjct: 7 LTTSLN-GLALN---EQTIDVLGNNIANAGTNGFKASSVLFETQLARTLSVGSRPTTENG 62 Query: 54 ----QKISFVASGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 Q+I A+ L+ GS S+ + D A++GD +F + G + TR G F + Sbjct: 63 GTNPQQIGLGATSAAILTDFSQGSVTSSTSPSDLAIQGDGFFIVNGSNGNLYTRAGNFNL 122 Query: 109 TDDGSLVSASG 119 + + SLV+ G Sbjct: 123 SSEDSLVTPEG 133 >gi|320179224|gb|EFW54182.1| Flagellar hook protein FlgE [Shigella boydii ATCC 9905] Length = 389 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|313144034|ref|ZP_07806227.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313129065|gb|EFR46682.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 707 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 20/141 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +TVGF+ + F +++ IK N + + F Sbjct: 3 AHQIALDVE----SNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFSIG 58 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A+EGD +F + RG TR+G F +G+L Sbjct: 59 LGVGIDATTKVFSQGNTQNTDVKTDIAIEGDGFFIISPDRGTTHNYTRNGEFLFDANGNL 118 Query: 115 VSASGKYPVLDMASVPIQIPQ 135 V+ +G Y V P++ + Sbjct: 119 VT-TGGYVVQGWVRPPLEAAE 138 >gi|296531742|ref|ZP_06894567.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] gi|296267925|gb|EFH13727.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] Length = 506 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GL AQ +LS +++N++N+ TVG++ + +F +V + ++ V Sbjct: 13 GLNAQAV---KLSGISNNIANSSTVGYKRVDTQFESLVLEGSSSGSYALAGVTPRNRVEI 69 Query: 68 KEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTDDGSLVSASGKY 121 +VG TG + D A+ G+ + + +S + TR G F+ G+LV+++G Y Sbjct: 70 SKVGQVQRTGVDTDIAVSGNGFLVVNENSDSTGKYLATRAGSFRPDAFGNLVNSAGFY 127 >gi|251772436|gb|EES53003.1| probable flagellar hook protein FlgE [Leptospirillum ferrodiazotrophum] Length = 458 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 7/114 (6%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV--- 70 A+ +S + +N+SN +T GF+ + F+ + G + G + + Sbjct: 16 AMGTDMSVIGNNISNMNTNGFKAGRAVFANIYGQTLAGKSNAVGPSQPGSGVYVESIEPL 75 Query: 71 ---GSFISTGTELDFALEGDAWFALESPRGIILT-RDGRFKVTDDGSLVSASGK 120 GS +T LD A++G+ +F+ + +G IL R+G + +G +V G Sbjct: 76 FTQGSVQTTSNALDLAIQGNGFFSFRNRQGAILYGRNGALSLDRNGRIVDQGGH 129 >gi|50120640|ref|YP_049807.1| flagellar basal body rod protein FlgF [Pectobacterium atrosepticum SCRI1043] gi|49611166|emb|CAG74612.1| flagellar basal-body rod protein [Pectobacterium atrosepticum SCRI1043] Length = 251 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 34/247 (13%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVASGKEY 65 +G A+Q +LE++ T A+N++N T GFR + S + N + + V + Sbjct: 9 MGGASQ-SLEKQAIT-ANNLANASTPGFR---AQLSALRAVPVNGLTLPTRTLVVASTPG 63 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG +D AL ++W A+++ G TR+G ++ DG L + G+ + Sbjct: 64 ADMTEGVMNYTGRAMDVALPKESWLAVQTANGGEAYTRNGNMEINADGQL-TIQGRVVMG 122 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGI- 177 D PI IP + +I ++ G IS IA +G L V + V R + G+ Sbjct: 123 DGG--PIDIPPQAQI-SISADGTISALNAGDPPNTIAQLGRLKLVKATGQEVERSDDGLF 179 Query: 178 ---------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITT 225 N+ L++ V + G +E SN N++ M MI ++F + + Sbjct: 180 RLTQQAQQQRGNV----LQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKVIS 235 Query: 226 LIDENEK 232 +D+N + Sbjct: 236 SVDDNAQ 242 >gi|157146226|ref|YP_001453545.1| flagellar hook protein FlgE [Citrobacter koseri ATCC BAA-895] gi|157083431|gb|ABV13109.1| hypothetical protein CKO_01983 [Citrobacter koseri ATCC BAA-895] Length = 401 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASV--PIQIP 134 + + PI IP Sbjct: 127 TIQQGANPGPITIP 140 >gi|769850|gb|AAA91361.1| flagellar distal rod protein [Borrelia burgdorferi N40] Length = 372 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 26/137 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVSAS 118 R G F V D LV+ + Sbjct: 114 RAGAFDVDSDRHLVNPA 130 >gi|291276324|ref|YP_003516096.1| flagellar hook subunit protein [Helicobacter mustelae 12198] gi|290963518|emb|CBG39349.1| flagellar hook subunit protein [Helicobacter mustelae 12198] Length = 705 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 23/127 (18%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------------NDIDQK 55 A Q+AL+ ++N++N +T GF+ + F +++ K ND+ Sbjct: 3 AHQVALDVE----SNNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVSVG 58 Query: 56 ISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDG 112 + V S + S+ GS +T + D A+EGD +F + RG TRDG F +G Sbjct: 59 LGVNVNSTTKVFSQ--GSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDANG 116 Query: 113 SLVSASG 119 +LV+ G Sbjct: 117 NLVTNGG 123 >gi|228964756|ref|ZP_04125863.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar sotto str. T04001] gi|228795006|gb|EEM42505.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar sotto str. T04001] Length = 249 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 35/223 (15%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T + DF L+ A +F LTRDG F + D L ++SG Sbjct: 65 VNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQTSSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQG--FVRREN 174 + V+ + I+IP+ ++ V G E++Q IA + +VD V+REN Sbjct: 125 F-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDAETNARLVQREN 180 Query: 175 SGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + NI P + +G+ VK LE+SN + EM ++ Sbjct: 181 KSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 220 >gi|20807880|ref|NP_623051.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|254478868|ref|ZP_05092232.1| Flagellar basal body protein FlgE [Carboxydibrachium pacificum DSM 12653] gi|20516445|gb|AAM24655.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|214035181|gb|EEB75891.1| Flagellar basal body protein FlgE [Carboxydibrachium pacificum DSM 12653] Length = 415 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 17/129 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISF---V 59 A + RL + +N++N +TVG++ ++ F E+ G Q+I + Sbjct: 14 AHQARLDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGGGTNPQQIGLGVAI 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 AS ++ G T D +++G+ +F + + I+ TR G F +G LV+ G Sbjct: 74 ASIDTLFTR--GGAQRTDNPTDLSIDGNGFFIVSNGESILYTRAGNFSFDSNGDLVTPDG 131 Query: 120 KYPVLDMAS 128 Y VL S Sbjct: 132 -YKVLGWMS 139 >gi|331672596|ref|ZP_08373385.1| flagellar hook protein FlgE [Escherichia coli TA280] gi|331070239|gb|EGI41605.1| flagellar hook protein FlgE [Escherichia coli TA280] Length = 401 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|331657138|ref|ZP_08358100.1| flagellar hook protein FlgE [Escherichia coli TA206] gi|331055386|gb|EGI27395.1| flagellar hook protein FlgE [Escherichia coli TA206] Length = 401 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIPQ 135 + + P I IP Sbjct: 127 TIQQGANPTNISIPN 141 >gi|331646334|ref|ZP_08347437.1| flagellar hook protein FlgE [Escherichia coli M605] gi|330910890|gb|EGH39400.1| flagellar hook protein FlgE [Escherichia coli AA86] gi|331045086|gb|EGI17213.1| flagellar hook protein FlgE [Escherichia coli M605] Length = 401 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|261339376|ref|ZP_05967234.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] gi|288318177|gb|EFC57115.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] Length = 402 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 10/115 (8%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPV 123 +TG LD A+ + +F + G + +R+G+FK+ ++ +LV+ G YPV Sbjct: 67 TNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPV 121 >gi|295096225|emb|CBK85315.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 402 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 10/115 (8%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPV 123 +TG LD A+ + +F + G + +R+G+FK+ ++ +LV+ G YPV Sbjct: 67 TNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPV 121 >gi|26247216|ref|NP_753256.1| flagellar hook protein FlgE [Escherichia coli CFT073] gi|227886566|ref|ZP_04004371.1| flagellar hook protein FlgE [Escherichia coli 83972] gi|300974380|ref|ZP_07172592.1| flagellar hook protein FlgE [Escherichia coli MS 45-1] gi|26107617|gb|AAN79816.1|AE016759_90 Flagellar hook protein flgE [Escherichia coli CFT073] gi|227836770|gb|EEJ47236.1| flagellar hook protein FlgE [Escherichia coli 83972] gi|300410623|gb|EFJ94161.1| flagellar hook protein FlgE [Escherichia coli MS 45-1] gi|307553078|gb|ADN45853.1| flagellar hook protein FlgE [Escherichia coli ABU 83972] gi|315291070|gb|EFU50433.1| flagellar hook protein FlgE [Escherichia coli MS 153-1] Length = 401 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|1196326|gb|AAB51418.1| flagellar hook protein [Borrelia burgdorferi] Length = 372 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 26/137 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVSAS 118 R G F V D LV+ + Sbjct: 114 RAGAFDVDSDRHLVNPA 130 >gi|30062613|ref|NP_836784.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 2457T] gi|161485924|ref|NP_706995.2| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] gi|30040859|gb|AAP16590.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 2457T] gi|313650473|gb|EFS14880.1| flagellar hook protein flgE [Shigella flexneri 2a str. 2457T] gi|332758235|gb|EGJ88558.1| flagellar hook protein flgE [Shigella flexneri 4343-70] gi|333005591|gb|EGK25109.1| flagellar hook protein flgE [Shigella flexneri K-218] Length = 402 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 10/115 (8%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPV 123 +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G YPV Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQLTGYPV 121 >gi|301645415|ref|ZP_07245356.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|301076299|gb|EFK91105.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] Length = 261 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 23/129 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-------SEVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 11 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGLQ 67 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G + ++ G I TRDG +V Sbjct: 68 FGSGVRIVGTQKTFTE---GNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNA 124 Query: 111 DGSLVSASG 119 DG L ++ G Sbjct: 125 DGVLTNSQG 133 >gi|170680582|ref|YP_001742375.1| flagellar basal body rod protein FlgG [Escherichia coli SMS-3-5] gi|256020230|ref|ZP_05434095.1| flagellar basal body rod protein FlgG [Shigella sp. D9] gi|260853468|ref|YP_003227359.1| putative lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|293403357|ref|ZP_06647448.1| flgG [Escherichia coli FVEC1412] gi|293408369|ref|ZP_06652208.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|298378968|ref|ZP_06988849.1| flagellar basal-body rod protein FlgG [Escherichia coli FVEC1302] gi|300900357|ref|ZP_07118533.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300936128|ref|ZP_07151067.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|306813301|ref|ZP_07447494.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|307313517|ref|ZP_07593138.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|331645420|ref|ZP_08346524.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|332281392|ref|ZP_08393805.1| lateral flagellar rod protein [Shigella sp. D9] gi|59889782|emb|CAH19138.1| Lateral flagellar rod protein (FlgG-like) [Escherichia coli] gi|170518300|gb|ACB16478.1| lateral flagellar rod protein LfgG [Escherichia coli SMS-3-5] gi|257752117|dbj|BAI23619.1| predicted lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|284920046|emb|CBG33103.1| lateral flagellar rod protein (FlgG-like) [Escherichia coli 042] gi|291429210|gb|EFF02230.1| flgG [Escherichia coli FVEC1412] gi|291471547|gb|EFF14030.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|298280081|gb|EFI21585.1| flagellar basal-body rod protein FlgG [Escherichia coli FVEC1302] gi|300356125|gb|EFJ71995.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300458706|gb|EFK22199.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|305854064|gb|EFM54503.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|306906685|gb|EFN37196.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|315059544|gb|ADT73871.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli W] gi|323158101|gb|EFZ44200.1| flagellar basal-body rod protein FlgG [Escherichia coli EPECa14] gi|323171066|gb|EFZ56715.1| flagellar basal-body rod protein FlgG [Escherichia coli LT-68] gi|323191540|gb|EFZ76801.1| flagellar basal-body rod protein FlgG [Escherichia coli RN587/1] gi|323379897|gb|ADX52165.1| flagellar basal-body rod protein FlgG [Escherichia coli KO11] gi|323975928|gb|EGB71022.1| flagellar basal-body rod protein FlgG [Escherichia coli TW10509] gi|327254556|gb|EGE66172.1| flagellar basal-body rod protein FlgG [Escherichia coli STEC_7v] gi|331045582|gb|EGI17708.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|332103744|gb|EGJ07090.1| lateral flagellar rod protein [Shigella sp. D9] Length = 261 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 23/129 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-------SEVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 11 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGLQ 67 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G + ++ G I TRDG +V Sbjct: 68 FGSGVRIVGTQKTFTE---GNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNA 124 Query: 111 DGSLVSASG 119 DG L ++ G Sbjct: 125 DGVLTNSQG 133 >gi|218703527|ref|YP_002411046.1| flagellar basal body rod protein FlgG [Escherichia coli UMN026] gi|218430624|emb|CAR11490.1| Flagellar basal-body rod protein (flgG-like) (Distal rod protein) [Escherichia coli UMN026] Length = 303 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 23/129 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-------SEVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 53 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGLQ 109 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G + ++ G I TRDG +V Sbjct: 110 FGSGVRIVGTQKTFTE---GNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNA 166 Query: 111 DGSLVSASG 119 DG L ++ G Sbjct: 167 DGVLTNSQG 175 >gi|323976551|gb|EGB71639.1| fagellar hook-basal body protein [Escherichia coli TW10509] Length = 401 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|260866415|ref|YP_003232817.1| putative lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|257762771|dbj|BAI34266.1| predicted lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|323178492|gb|EFZ64070.1| flagellar basal-body rod protein FlgG [Escherichia coli 1180] Length = 261 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 23/129 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 11 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTLEAPGAMLDQNNIMPTGLQ 67 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G + ++ G I TRDG +V Sbjct: 68 FGSGVRIVGTQKTFTE---GNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNA 124 Query: 111 DGSLVSASG 119 DG L ++ G Sbjct: 125 DGVLTNSQG 133 >gi|332759635|gb|EGJ89940.1| flagellar hook protein flgE [Shigella flexneri 2747-71] gi|332767683|gb|EGJ97876.1| flagellar hook protein FlgE [Shigella flexneri 2930-71] Length = 402 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 10/115 (8%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPV 123 +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G YPV Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQLTGYPV 121 >gi|208434813|ref|YP_002266479.1| flagellar hook protein [Helicobacter pylori G27] gi|208432742|gb|ACI27613.1| flagellar hook protein [Helicobacter pylori G27] Length = 605 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 53/251 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY--------LSKEV 70 + ++++N++N +T+G+R+ +F + + + ++ K S V + + Y LS + Sbjct: 19 IDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAK-SVVTNDRNYGVTGSGNVLSNKD 77 Query: 71 GSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLV 115 G ++ + E A +G WF + + LTR G F DG LV Sbjct: 78 GEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLV 137 Query: 116 SASGKYPV-LDMASVPIQIPQKDEIFNVGEKGEISQK--GKVIATMGLYSVDMSQGFVRR 172 + G Y +D+ + KD N + E +K G ++ + + D++ V Sbjct: 138 TPEGYYVYGIDLKKI------KDGTLNSTARDEDIEKLHGNTLSPLQI-PQDLTYQPVLS 190 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH---LTQKFNSITTLIDE 229 GIS N+ P + L G V+ FL D G++I L Q N++ D+ Sbjct: 191 TKVGISVNL--NPKDHLKG--VQDFFLNDK--------GEIIKERFLNQDINALAN--DD 236 Query: 230 NEKSMLEAIRN 240 NE ++AI N Sbjct: 237 NEP--IDAITN 245 >gi|170021358|ref|YP_001726312.1| flagellar basal body rod protein FlgG [Escherichia coli ATCC 8739] gi|188494741|ref|ZP_03002011.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|307136860|ref|ZP_07496216.1| flagellar basal body rod protein FlgG [Escherichia coli H736] gi|331640715|ref|ZP_08341862.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331671806|ref|ZP_08372602.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|169756286|gb|ACA78985.1| flagellar basal-body rod protein FlgG [Escherichia coli ATCC 8739] gi|188489940|gb|EDU65043.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|315616825|gb|EFU97442.1| flagellar basal-body rod protein FlgG [Escherichia coli 3431] gi|323181549|gb|EFZ66969.1| flagellar basal-body rod protein FlgG [Escherichia coli 1357] gi|331040089|gb|EGI12297.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331070795|gb|EGI42154.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] Length = 261 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 23/129 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-------SEVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 11 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGLQ 67 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G + ++ G I TRDG +V Sbjct: 68 FGSGVRIVGTQKTFTE---GNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNA 124 Query: 111 DGSLVSASG 119 DG L ++ G Sbjct: 125 DGVLTNSQG 133 >gi|237753142|ref|ZP_04583622.1| flagellar hook protein FlgE [Helicobacter winghamensis ATCC BAA-430] gi|229375409|gb|EEO25500.1| flagellar hook protein FlgE [Helicobacter winghamensis ATCC BAA-430] Length = 758 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 20/129 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-------------NDIDQ 54 G++ A + L ++N++N +T GF+ + FS +V K ND Sbjct: 8 GVSGMQAHQIALDVESNNIANVNTTGFKYSRADFSTMVSQTKRSATIPYAGYGGVNDFSV 67 Query: 55 KISFVASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTD 110 + +G E +K E GS +T + D ALEG F + + G + TRDG F Sbjct: 68 GL---GTGIETTTKIFEQGSLQNTDRKGDLALEGKGMFVVSNNGGYSNMYTRDGAFMFDA 124 Query: 111 DGSLVSASG 119 G+LV+ SG Sbjct: 125 VGNLVNTSG 133 >gi|170683341|ref|YP_001744104.1| flagellar hook protein FlgE [Escherichia coli SMS-3-5] gi|300938641|ref|ZP_07153370.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] gi|170521059|gb|ACB19237.1| flagellar hook protein FlgE [Escherichia coli SMS-3-5] gi|300456426|gb|EFK19919.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] Length = 401 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|311105935|ref|YP_003978788.1| flagellar hook protein FlgE [Achromobacter xylosoxidans A8] gi|310760624|gb|ADP16073.1| flagellar hook protein FlgE [Achromobacter xylosoxidans A8] Length = 491 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K++ A + Sbjct: 3 FGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKVA--AINQR 60 Query: 65 YLSKEVGSFISTGTELDFALEG-DAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG--- 119 + V G E D A++G F + G ++ TR+G F V + +V+A G Sbjct: 61 FTVGTV---NGGGGEYDIAIDGAKGMFRVTDQSGAVMYTRNGEFLVDKNNFIVNAQGYRL 117 Query: 120 -KYPVLDMASVPIQI 133 YP + + P+++ Sbjct: 118 TGYPPGSVGANPVEL 132 >gi|295678058|ref|YP_003606582.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] gi|295437901|gb|ADG17071.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] Length = 510 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/131 (20%), Positives = 65/131 (49%), Gaps = 12/131 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYLSK-EVGSFIST 76 L + +N++N +TVGF++ +F+++ ++ Q+I E + G+ +T Sbjct: 17 LDVIGNNIANANTVGFKSGTAEFADMYANSVATATSQQIGIGTKLSEVQQQFSQGTITTT 76 Query: 77 GTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------KYPVLDMA 127 L+ A+ G+ ++ L ++ +R+G F++ +G + +A G +++ A Sbjct: 77 NQALNVAINGNGFYQLSDNGTLVYSRNGVFQLDKNGFITNAQGLKLMGYAASSAGIINTA 136 Query: 128 -SVPIQIPQKD 137 +VP+ +P + Sbjct: 137 QTVPLTVPTAN 147 >gi|255591998|ref|XP_002535647.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] gi|223522413|gb|EEF26734.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] Length = 166 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 26/129 (20%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-------- 61 A QL +E T+A N++N +T G++ +V FS++V D ++ + +A Sbjct: 3 AQQLNVE----TIASNLANVNTAGYKRSRVSFSDLVAL---DPARRTAALAGSDAGLLAP 55 Query: 62 --------GKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 G +SK + G T +D ++G+ +F +++P G TR G + V Sbjct: 56 VMRMGAGVGVAGISKLFDAGDIKKTDLPMDIIVQGEGFFEVQTPDGTPAYTRGGTWTVNR 115 Query: 111 DGSLVSASG 119 DG+L +++G Sbjct: 116 DGNLATSAG 124 >gi|324007916|gb|EGB77135.1| flagellar hook protein FlgE [Escherichia coli MS 57-2] Length = 401 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|281178185|dbj|BAI54515.1| flagellar hook protein FlgE [Escherichia coli SE15] Length = 401 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIPQ 135 + + P I IP Sbjct: 127 TIQQGANPTNISIPN 141 >gi|218700421|ref|YP_002408050.1| flagellar hook protein FlgE [Escherichia coli IAI39] gi|218370407|emb|CAR18214.1| flagellar hook protein [Escherichia coli IAI39] Length = 400 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIPQ 135 + + P I IP Sbjct: 127 TIQQGANPTNISIPN 141 >gi|224533123|ref|ZP_03673723.1| flagellar hook protein FlgE [Borrelia burgdorferi WI91-23] gi|224511850|gb|EEF82251.1| flagellar hook protein FlgE [Borrelia burgdorferi WI91-23] gi|312149691|gb|ADQ29762.1| flagellar hook protein FlgE [Borrelia burgdorferi N40] Length = 442 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|110805093|ref|YP_688613.1| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401] gi|110614641|gb|ABF03308.1| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401] Length = 402 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 10/115 (8%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPV 123 +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G YPV Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQLTGYPV 121 >gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] Length = 642 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 10/115 (8%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 252 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 306 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPV 123 +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G YPV Sbjct: 307 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQLTGYPV 361 >gi|15594628|ref|NP_212417.1| flagellar hook protein FlgE [Borrelia burgdorferi B31] gi|223889009|ref|ZP_03623600.1| flagellar hook protein FlgE [Borrelia burgdorferi 64b] gi|226321601|ref|ZP_03797127.1| flagellar hook protein FlgE [Borrelia burgdorferi Bol26] gi|2494528|sp|Q44767|FLGE_BORBU RecName: Full=Flagellar hook protein flgE gi|1165267|gb|AAA85606.1| FlgE [Borrelia burgdorferi] gi|2688183|gb|AAC66665.1| flagellar hook protein (flgE) [Borrelia burgdorferi B31] gi|223885825|gb|EEF56924.1| flagellar hook protein FlgE [Borrelia burgdorferi 64b] gi|226232790|gb|EEH31543.1| flagellar hook protein FlgE [Borrelia burgdorferi Bol26] Length = 442 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|315186381|gb|EFU20141.1| fagellar hook-basal body protein [Spirochaeta thermophila DSM 6578] Length = 462 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 26/137 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N+SN +T GF+ +V F ++ I Q +S A Sbjct: 1 MMRSLYAGVSGLQNHQIRMDVIGNNISNVNTTGFKKGRVNFHDM-------ISQTLSGAA 53 Query: 61 SGKEYLS----KEV---------------GSFISTGTELDFALEGDAWFALESPRGIILT 101 E + K+V GS +TG D A++G+ +F L T Sbjct: 54 RPTEEVGGVNPKQVGLGMTIASIDTIHTQGSLQTTGVMTDVAVQGEGFFILRKGDRSFYT 113 Query: 102 RDGRFKVTDDGSLVSAS 118 R G F + ++G LV+ + Sbjct: 114 RAGVFGLDEEGYLVNPA 130 >gi|158422271|ref|YP_001523563.1| flagellar hook protein FlgE [Azorhizobium caulinodans ORS 571] gi|158329160|dbj|BAF86645.1| flagellar basal body FlaE protein [Azorhizobium caulinodans ORS 571] Length = 430 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK---- 63 G+ AQ +L T++DN++N++T G++ FS ++ +D S SG Sbjct: 13 GMNAQ---SNKLGTISDNIANSNTTGYKKATTDFSSLI------VDSSTSEYNSGSVNTK 63 Query: 64 -EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV-TDDGSLVSASG 119 Y + G+ S+ + D + GD +F ++ G LTR G F V G+LV+ +G Sbjct: 64 ISYDISKQGTTTSSTSATDMMVNGDGFFVVQDGGGSTYLTRAGSFTVDATTGNLVNTAG 122 >gi|23010476|ref|ZP_00051152.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 160 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 4/153 (2%) Query: 90 FALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 A+++P+G TR+G F++ G+LV++ G Y V PI I Q++ ++ G +S Sbjct: 9 LAVQTPQGPRYTRNGAFELDPQGNLVTSDG-YAVQGDGG-PITIGQQETGLSIAPDGTVS 66 Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + + + Q + S P P G ++ G LE SN + E Sbjct: 67 TNLGIRGRLRIVTFANPQALQSEGANLFSSQAPARPAG--PGQHLEPGALERSNVKPVVE 124 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M +++ + + + ++++I + AIR +A Sbjct: 125 MTRLMDVNRTYAMVSSVISRLDDLRGTAIRRLA 157 >gi|326939385|gb|AEA15281.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis serovar chinensis CT-43] Length = 257 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 35/233 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + G + N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGVVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L ++SG + V+ + I+IP+ ++ V G EI+Q IA + +VD Sbjct: 123 DRYLQTSSGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEITQNN--IARLQTKTVDAE 178 Query: 167 QG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 V+REN + NI P + +G+ VK LE+SN + EM ++ Sbjct: 179 TNARLVQRENKSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 228 >gi|296282277|ref|ZP_06860275.1| flagellar basal body rod protein FlgG [Citromicrobium bathyomarinum JL354] Length = 262 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 22/139 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------- 57 GL AQ + R+ +A+N++N T GF+ + F+ + QK S Sbjct: 12 GLEAQ---DARMRVIANNLANVGTTGFKRDRANFATLAYQDARVAGQKSSGETAYATGLN 68 Query: 58 -----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 V S + ++ G+ +T D AL+GD +F + P G TR G F + + Sbjct: 69 LGTGVAVQSTSQIMT--AGTLDTTNNAFDLALDGDGFFQIAMPGGRTGYTRAGNFTRSAE 126 Query: 112 GSLVSASGKYPVLDMASVP 130 G LV+ G + V +VP Sbjct: 127 GMLVTQQG-FAVQPEITVP 144 >gi|332088750|gb|EGI93862.1| flagellar hook protein flgE [Shigella boydii 5216-82] Length = 401 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLYVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|216264643|ref|ZP_03436635.1| flagellar hook protein FlgE [Borrelia burgdorferi 156a] gi|215981116|gb|EEC21923.1| flagellar hook protein FlgE [Borrelia burgdorferi 156a] Length = 442 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|225552055|ref|ZP_03772995.1| flagellar hook protein FlgE [Borrelia sp. SV1] gi|225371053|gb|EEH00483.1| flagellar hook protein FlgE [Borrelia sp. SV1] Length = 442 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|312147981|gb|ADQ30640.1| flagellar hook protein FlgE [Borrelia burgdorferi JD1] Length = 442 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|218249383|ref|YP_002374806.1| flagellar hook protein FlgE [Borrelia burgdorferi ZS7] gi|218164571|gb|ACK74632.1| flagellar hook protein FlgE [Borrelia burgdorferi ZS7] Length = 442 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|22127326|ref|NP_670749.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM 10] gi|45442797|ref|NP_994336.1| flagellar basal body rod protein FlgF [Yersinia pestis biovar Microtus str. 91001] gi|108809054|ref|YP_652970.1| flagellar basal body rod protein FlgF [Yersinia pestis Antiqua] gi|108810749|ref|YP_646516.1| flagellar basal body rod protein FlgF [Yersinia pestis Nepal516] gi|145597818|ref|YP_001161894.1| flagellar basal body rod protein FlgF [Yersinia pestis Pestoides F] gi|166212093|ref|ZP_02238128.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. B42003004] gi|167399157|ref|ZP_02304681.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167425211|ref|ZP_02316964.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229837409|ref|ZP_04457572.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A] gi|229900946|ref|ZP_04516070.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516] gi|21960407|gb|AAM87000.1|AE013948_8 putative flagellar rod protein [Yersinia pestis KIM 10] gi|45437663|gb|AAS63213.1| putative flagellar rod protein [Yersinia pestis biovar Microtus str. 91001] gi|108774397|gb|ABG16916.1| hypothetical protein YPN_0584 [Yersinia pestis Nepal516] gi|108780967|gb|ABG15025.1| hypothetical protein YPA_3063 [Yersinia pestis Antiqua] gi|145209514|gb|ABP38921.1| hypothetical protein YPDSF_0510 [Yersinia pestis Pestoides F] gi|166206839|gb|EDR51319.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. B42003004] gi|167051661|gb|EDR63069.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055974|gb|EDR65755.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682285|gb|EEO78377.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516] gi|229705532|gb|EEO91542.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A] gi|320016710|gb|ADW00282.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 243 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 35/215 (16%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG------SFI 74 A+N++N++T GFR K ++V+G +S LS+ G S Sbjct: 23 ANNLANSNTQGFRADLEKATATQVMGG----------GYSSRVAVLSQNAGVDMTPASLQ 72 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG +LD AL+ A+ S TR+G+ V+ +G+L PVL PI +P Sbjct: 73 ETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVSAEGALT--INGLPVLGDGG-PIVLP 129 Query: 135 QKDEIFNVGEKGEIS---QKGKV-----IATMGLYSVDMSQGFVRRENSG-ISPNIPPTP 185 ++ + G I+ Q G + I + L VD+ +R+ N G + N P Sbjct: 130 PYSA-LSIADDGTIAIIPQAGGIKTPEEIERIKL--VDIPANQLRKNNRGLLVSNRGPAA 186 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ V V LE SN +++ EM I L+++F Sbjct: 187 RDET--VQVVNKHLESSNVSAISEMIASISLSRQF 219 >gi|281600495|gb|ADA73479.1| Flagellar hook protein FlgE [Shigella flexneri 2002017] gi|332761421|gb|EGJ91705.1| flagellar hook protein flgE [Shigella flexneri K-671] gi|333019459|gb|EGK38742.1| flagellar hook protein flgE [Shigella flexneri K-304] Length = 379 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 10/115 (8%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPV 123 +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G YPV Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQLTGYPV 121 >gi|195941363|ref|ZP_03086745.1| flagellar hook protein FlgE [Borrelia burgdorferi 80a] gi|221217779|ref|ZP_03589247.1| flagellar hook protein FlgE [Borrelia burgdorferi 72a] gi|224533707|ref|ZP_03674295.1| flagellar hook protein FlgE [Borrelia burgdorferi CA-11.2a] gi|225549062|ref|ZP_03770037.1| flagellar hook protein FlgE [Borrelia burgdorferi 94a] gi|225550122|ref|ZP_03771082.1| flagellar hook protein FlgE [Borrelia burgdorferi 118a] gi|226320584|ref|ZP_03796144.1| flagellar hook protein FlgE [Borrelia burgdorferi 29805] gi|221192456|gb|EEE18675.1| flagellar hook protein FlgE [Borrelia burgdorferi 72a] gi|224513000|gb|EEF83363.1| flagellar hook protein FlgE [Borrelia burgdorferi CA-11.2a] gi|225369234|gb|EEG98687.1| flagellar hook protein FlgE [Borrelia burgdorferi 118a] gi|225370288|gb|EEG99726.1| flagellar hook protein FlgE [Borrelia burgdorferi 94a] gi|226234003|gb|EEH32724.1| flagellar hook protein FlgE [Borrelia burgdorferi 29805] Length = 442 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 59 -------------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILT 101 V G S + G+F ST D + G+ +F L+ + + T Sbjct: 54 RPTDARGGTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|309779448|ref|ZP_07674209.1| flagellar basal-body rod protein FlgF [Ralstonia sp. 5_7_47FAA] gi|308921689|gb|EFP67325.1| flagellar basal-body rod protein FlgF [Ralstonia sp. 5_7_47FAA] Length = 245 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query: 71 GSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G +TG LD A++G +FA+++P G TR G F++ DG++ + SG+ PVL Sbjct: 69 GPIETTGRSLDVAIDGQGFFAVQTPDGGEAYTRAGTFQLGPDGTIQTLSGQ-PVLGDGG- 126 Query: 130 PIQIP 134 PI +P Sbjct: 127 PITLP 131 >gi|153953798|ref|YP_001394563.1| flagellar basal body rod protein FlgG [Clostridium kluyveri DSM 555] gi|219854414|ref|YP_002471536.1| hypothetical protein CKR_1071 [Clostridium kluyveri NBRC 12016] gi|146346679|gb|EDK33215.1| FlgG2 [Clostridium kluyveri DSM 555] gi|219568138|dbj|BAH06122.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 261 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 27/234 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVASG 62 +A A +++L+++++NM+N +TVG++ V F ++V G ND Q + +G Sbjct: 10 SAMNAEQEKLNSISNNMANAETVGYKREVVNFQDLVYETLDRNGYPVNDEGQN-TINGTG 68 Query: 63 ---KEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSA 117 +L + GS TG + + A++G+ +F + G R G F V G LV Sbjct: 69 VRTTNWLRDTLQGSLQETGLKANMAIDGEGFFRVTLQNGTQGYERAGNFNVNSMGELVDP 128 Query: 118 SGKYPVLDMASVPIQIPQ-----KDEIFNVGEKGEI----SQKGKVIATMGLYSVDMSQG 168 G +++ + + ++ F V +KG+I + + +Y+ Sbjct: 129 DGNRLEVNLTEEGVNLINSGVLLNNDNFTVDKKGQIYVNVDDNSVLYGKINVYNAVGQDS 188 Query: 169 FVRRENSGISP--NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + ++ P N+ T +D + +G+LE SN + E+ MI + F Sbjct: 189 MLSIGDNLYLPAENVQVTENQD---ANILQGYLEQSNVDLGREITDMILAQRAF 239 >gi|57505769|ref|ZP_00371695.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57016042|gb|EAL52830.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 545 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 5/104 (4%) Query: 23 ADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 A+N++N +T GF+ +F ++ + + + Q S L E GS +++ Sbjct: 23 ANNIANVNTTGFKYSNAEFKDIFYSTITSQSTNPAQGGYGSTSASSKLVFEQGSPVASEG 82 Query: 79 ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKY 121 E D AL+G +F + G+ TR+G FK +G LV + G + Sbjct: 83 EFDVALQGKGFFGVLGADGMPYYTRNGAFKRDANGHLVDSYGNF 126 >gi|315452912|ref|YP_004073182.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] gi|315131964|emb|CBY82592.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] Length = 718 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 31/186 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF--- 58 A Q+AL+ ++N++N +T GF+ + F +++ +K N + + F Sbjct: 14 AHQIALDIE----SNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGLAGQNDFSVG 69 Query: 59 VASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 + G + +K G+ +T + D A+EGD +F + RG+ TR G F +G+L Sbjct: 70 LGVGVDATTKIFSQGNLQNTDVKTDLAIEGDGFFVISPDRGVTRNFTRSGEFLFDAEGNL 129 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV--RR 172 V+ +G Y V P KD +G KG + K+ T L ++ + G V R Sbjct: 130 VT-TGGYVVQGWVRDP-----KD----MGSKGSETDMLKIDNTKPLQNIRIDPGMVMPAR 179 Query: 173 ENSGIS 178 +S IS Sbjct: 180 SSSKIS 185 >gi|325567513|ref|ZP_08144180.1| flagellar basal-body rod protein [Enterococcus casseliflavus ATCC 12755] gi|325158946|gb|EGC71092.1| flagellar basal-body rod protein [Enterococcus casseliflavus ATCC 12755] Length = 233 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 55/248 (22%), Positives = 103/248 (41%), Gaps = 53/248 (21%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKN-------DIDQKISFVASGKEY 65 L++R T + N++N +T G++ K F + A+ N D + I ++ G + Sbjct: 15 LQKRQETTSCNIANVNTTGYQA-KTLFQSALDEVALHNYQSGPNADTRRDIGGLSLGTQL 73 Query: 66 ----LSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFK-------VTDDGS 113 +S++ G+ TG DFAL + +F +++ G L TR+G F VT +G Sbjct: 74 AGSTISQDQGAVKQTGQASDFALLSEGYFVVQNNAGQRLYTRNGDFTVNQQNQYVTQEGY 133 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 LV + V + QI + F + + T G Q +V Sbjct: 134 LVLGANGQAVSALGPANFQI----QTF----------PPEALTTAG-------QNYVTSN 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 +G + N P +++G LE +N EM MI +++F + + ++ Sbjct: 173 AAGTTVNAP----------VIQQGALEQANVAVADEMVAMIQTSREFEANQKALSSTNQT 222 Query: 234 MLEAIRNI 241 + +A+ + Sbjct: 223 LQKAVNEL 230 >gi|253702499|ref|YP_003023688.1| hypothetical protein GM21_3913 [Geobacter sp. M21] gi|251777349|gb|ACT19930.1| protein of unknown function DUF1078 domain protein [Geobacter sp. M21] Length = 294 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 22/140 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ L + ++ + +N+SN +T+G++ + FS+++ + Q GK Sbjct: 10 GVSGLLQNGEAMNVIGNNISNVNTIGYKGARTLFSDMLSQNVGNNSQI------GKGVQM 63 Query: 68 KEVGSFISTGTE------LDFALEGDAWFALESPRG---------IILTRDGRFKVTDDG 112 + V + S G+ D A++G+++FAL+ L+R G F+ + Sbjct: 64 QVVQNVFSQGSTQSSENVTDLAIQGNSFFALKPSTAAAPVARQSDAFLSRAGAFQTDSNL 123 Query: 113 SLVSASGKYPVLDMASVPIQ 132 LV+ G Y VLD A PIQ Sbjct: 124 YLVNPDG-YQVLDTAGNPIQ 142 >gi|123442782|ref|YP_001006759.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089743|emb|CAL12596.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 217 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 18/183 (9%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ T D A++G+ +F ++ P G TRDG F+ +G LV+ SG + + ++ Sbjct: 41 GNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQTDQNGQLVT-SGGFQIQPAITI 99 Query: 130 PIQIPQ----KDEIFNVGEKGEIS--QKGKV-----IATMGLYSVDMSQGFVRRENSGIS 178 P +D I +V G+ + Q G++ I GL SV + + S + Sbjct: 100 PANAMSMTVGRDGIVSVTLPGQTATQQVGQLTLATFINNSGLESV--GENLYQETASSGA 157 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 PN TP + G+ + +G++E SN N E+ MI TQ+ I + ML+ + Sbjct: 158 PN-ETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQ-TQRAYEINSKAVSTSDQMLQKL 214 Query: 239 RNI 241 + Sbjct: 215 TQL 217 >gi|194428463|ref|ZP_03061003.1| flagellar hook protein FlgE [Escherichia coli B171] gi|194413515|gb|EDX29797.1| flagellar hook protein FlgE [Escherichia coli B171] Length = 396 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P I Sbjct: 127 TIQQGANPTNI 137 >gi|224436455|ref|ZP_03657469.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313142967|ref|ZP_07805160.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313127998|gb|EFR45615.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 745 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 22/125 (17%) Query: 19 LSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKND--IDQKISFVAS-GKEYLSKEVG 71 L ++++N++N +T+G+R + FS + ++ D I+ +++ A+ +S G Sbjct: 19 LDSISNNIANVNTIGYRRNIPQFESLFSTNMDSLNADSPINNDMNYGATKSSNAISTRSG 78 Query: 72 SFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGSLVS 116 S+ ++ E + A EG WF + E + TRDG F +G +V+ Sbjct: 79 SYKASDGEFNVAYEGKGWFVVGEQKSGSFEIKDDGYEKKQKNYFTRDGSFLRDGEGYIVN 138 Query: 117 ASGKY 121 SG Y Sbjct: 139 TSGYY 143 >gi|323190588|gb|EFZ75860.1| flagellar hook protein flgE [Escherichia coli RN587/1] Length = 401 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDIIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|213421404|ref|ZP_03354470.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 197 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 26/160 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGE 147 +G LV+A G P + + + + I +D + +V ++G+ Sbjct: 125 NGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQ 164 >gi|253688971|ref|YP_003018161.1| flagellar basal-body rod protein FlgF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755549|gb|ACT13625.1| flagellar basal-body rod protein FlgF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 251 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 34/247 (13%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVASGKEY 65 +G A+Q +LE++ T A+N++N T GFR + S + N + + V + Sbjct: 9 MGGASQ-SLEKQAIT-ANNLANASTPGFR---AQLSALRAVPVNGLTLPTRTLVVASTPG 63 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG +D AL ++W A+++ G TR+G ++ DG L + G+ + Sbjct: 64 ADMTEGVMNYTGRAMDVALPKESWLAVQTANGGEAYTRNGNMEINADGQL-TIQGRVVMG 122 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGI- 177 D PI +P + +I ++ G IS IA +G L V + V R + G+ Sbjct: 123 DGG--PIDVPPQAQI-SISADGTISALNPGDPPNTIAQLGRLKLVKATGQEVERSDDGLF 179 Query: 178 ---------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITT 225 N+ L++ V + G +E SN N++ M MI ++F + + Sbjct: 180 RLTQQAQQQRGNV----LQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKVIS 235 Query: 226 LIDENEK 232 +D+N + Sbjct: 236 SVDDNAQ 242 >gi|291518270|emb|CBK73491.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 47/262 (17%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 ++ T+A+N++N +T+ +++ +F K + Q + ++ + +K + + G Sbjct: 18 QVDTIANNLANVNTMAYKSQSAQF-------KTLLYQTLEAESTNAQGETKPTSAQVGLG 70 Query: 78 TELD-------------------FALEGDAWFALESPRGIILTRDGRFKV----TDDGSL 114 T + + G+ +FA++ TR+G F T D L Sbjct: 71 TRVASLNANFTQGPQMANDSKTAMCIIGEGFFAVQDGEETHYTRNGNFTWAIGPTGDKVL 130 Query: 115 VSASGKYPVLDMASVPIQIPQ-KDEI-FNVG-EKGEIS---QKGKVIAT---MGLYSVDM 165 ++ G Y VLD A PI +P+ E+ F V + G S Q G +I T + LY Sbjct: 131 TTSDG-YQVLDQAGRPITLPRTAGELGFAVNIDDGSCSYKDQAGNIIRTGQSIALYQFTN 189 Query: 166 SQGFVR-RENSGISPNIPPTPLEDL--SGVT---VKRGFLEDSNANSMYEMGQMIHLTQK 219 G + EN + P+ + +GVT + +G+LE SN N EM +I + Q+ Sbjct: 190 RVGLNKIGENLYDESDASGEPISEWNTAGVTRSQIAQGYLEGSNVNVADEMVNLI-IAQR 248 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + +MLE N+ Sbjct: 249 AYEMNSKAITTSDTMLEQANNL 270 >gi|242310749|ref|ZP_04809904.1| flagellar hook protein flge [Helicobacter pullorum MIT 98-5489] gi|239523147|gb|EEQ63013.1| flagellar hook protein flge [Helicobacter pullorum MIT 98-5489] Length = 764 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 27/127 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGA----------IKNDIDQKISFVASGKEYLSK 68 + ++N++N +T GFR +F + + ND + ++ G ++ Sbjct: 19 IDVTSNNIANINTTGFRANTPEFKSLFSTNLNYVNSNSPVANDYNYGVTL---GSNAINT 75 Query: 69 EVGSFISTGTELDFALEGDAWFA----------LESPRGII----LTRDGRFKVTDDGSL 114 G+++S + + A G WF + +P + TRDG F + +G L Sbjct: 76 NDGTYVSADGDFNVAYSGKGWFVVGLNKNGEFDINNPNYNVKQNYFTRDGSFSLDGEGYL 135 Query: 115 VSASGKY 121 V++SG Y Sbjct: 136 VNSSGYY 142 >gi|165869539|ref|ZP_02214198.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0488] gi|190566290|ref|ZP_03019208.1| putative flagellar basal-body rod protein [Bacillus anthracis Tsiankovskii-I] gi|218902886|ref|YP_002450720.1| putative flagellar basal-body rod protein [Bacillus cereus AH820] gi|227815455|ref|YP_002815464.1| putative flagellar basal-body rod protein [Bacillus anthracis str. CDC 684] gi|164714979|gb|EDR20497.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0488] gi|190562425|gb|EDV16392.1| putative flagellar basal-body rod protein [Bacillus anthracis Tsiankovskii-I] gi|218539299|gb|ACK91697.1| putative flagellar basal-body rod protein [Bacillus cereus AH820] gi|227003269|gb|ACP13012.1| putative flagellar basal-body rod protein [Bacillus anthracis str. CDC 684] Length = 249 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 45/228 (19%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T ++ DF L+ G A F + S LTRDG F + D L + SG Sbjct: 65 VNLVQGNIQMTNSDTDFLLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSV--DMSQGFV 170 + V+ + I+IP+ G K + G + IA + +V + + + Sbjct: 125 F-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLI 176 Query: 171 RRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 +REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 177 QRENKSFTLAEGNIADLP----NGVGTVKNYMLENSNVDMTKEMADLM 220 >gi|110641252|ref|YP_668982.1| flagellar hook protein FlgE [Escherichia coli 536] gi|191172366|ref|ZP_03033907.1| flagellar hook protein FlgE [Escherichia coli F11] gi|300982621|ref|ZP_07176205.1| flagellar hook protein FlgE [Escherichia coli MS 200-1] gi|110342844|gb|ABG69081.1| flagellar hook protein FlgE [Escherichia coli 536] gi|190907250|gb|EDV66848.1| flagellar hook protein FlgE [Escherichia coli F11] gi|300307086|gb|EFJ61606.1| flagellar hook protein FlgE [Escherichia coli MS 200-1] gi|324013350|gb|EGB82569.1| flagellar hook protein FlgE [Escherichia coli MS 60-1] Length = 401 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 18/130 (13%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 L + +N++N+ T GF++ F+++ K + K++ + +++ G+ +TG Sbjct: 16 NLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTTTNTG 70 Query: 78 TELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYPVLDM 126 LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P + Sbjct: 71 RGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQ 130 Query: 127 ASVP--IQIP 134 + P I IP Sbjct: 131 GANPTNISIP 140 >gi|197120190|ref|YP_002140617.1| flagellar hook protein FlgE [Geobacter bemidjiensis Bem] gi|197089550|gb|ACH40821.1| flagellar hook protein FlgE [Geobacter bemidjiensis Bem] Length = 294 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 22/140 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ L + ++ + +N+SN +TVG++ + FS+++ + Q GK Sbjct: 10 GVSGLLQNGEAMNVIGNNISNVNTVGYKGARTLFSDMLSQNVGNNSQI------GKGVQM 63 Query: 68 KEVGSFISTGTE------LDFALEGDAWFALE---------SPRGIILTRDGRFKVTDDG 112 + V + S G+ D A++G+++FAL+ + L+R G F + Sbjct: 64 QAVQNVFSQGSTQTSENVTDLAIQGNSFFALKPSTAAAPVAAQSSAFLSRAGAFHTDSNL 123 Query: 113 SLVSASGKYPVLDMASVPIQ 132 LV+ G Y VLD A PI+ Sbjct: 124 YLVNPDG-YQVLDTAGNPIK 142 >gi|306814075|ref|ZP_07448248.1| flagellar hook protein FlgE [Escherichia coli NC101] gi|305852712|gb|EFM53160.1| flagellar hook protein FlgE [Escherichia coli NC101] Length = 401 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 18/130 (13%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 L + +N++N+ T GF++ F+++ K + K++ + +++ G+ +TG Sbjct: 16 NLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTTTNTG 70 Query: 78 TELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYPVLDM 126 LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P + Sbjct: 71 RGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQ 130 Query: 127 ASVP--IQIP 134 + P I IP Sbjct: 131 GANPTNISIP 140 >gi|224534234|ref|ZP_03674812.1| flagellar hook protein FlgE [Borrelia spielmanii A14S] gi|224514336|gb|EEF84652.1| flagellar hook protein FlgE [Borrelia spielmanii A14S] Length = 442 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 + K+VG +F ST D + G+ +F L+ + + T Sbjct: 54 RPTDVRGGTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|126697840|ref|YP_001086737.1| flagellar basal body rod protein FlgG [Clostridium difficile 630] gi|115249277|emb|CAJ67090.1| Flagellar hook-basal body complex protein FlgG1 [Clostridium difficile] Length = 257 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 14/129 (10%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEV----VGAIKNDIDQK---- 55 I ++A + +Q+ + V +N++N DT G+++ ++ F E+ N QK Sbjct: 7 IAVSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTKQKQIIG 66 Query: 56 -ISFVASGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 IS S E ++ G +T ++D A++G +F + G TR+G F+ + G Sbjct: 67 DISPGISMDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNFRTDNQG 126 Query: 113 SLVSASGKY 121 L+++ G Y Sbjct: 127 DLITSEGYY 135 >gi|225569955|ref|ZP_03778980.1| hypothetical protein CLOHYLEM_06050 [Clostridium hylemonae DSM 15053] gi|225161425|gb|EEG74044.1| hypothetical protein CLOHYLEM_06050 [Clostridium hylemonae DSM 15053] Length = 236 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 39/252 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M TSF + +L+ +++N +N +T G++ F +++ + + + Sbjct: 1 MNTSFYTASRGARTQQDKLNVISNNFANVNTYGYKAKSSVFQDLMYYNMRAGEGVATHLT 60 Query: 61 SGK-EYLSKEVGSFISTGT-----ELDFALEGDAWFALESP--RGIILTRDGRFKVT--- 109 SG L +F +G D+A+ GD +F L P I TR+G F ++ Sbjct: 61 SGTGTVLDHTNTNFSQSGLGDGIGGYDYAISGDGFFMLRDPVTNEISYTRNGHFSLSRRA 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 D LV+ S K VLD PI++ Q G + G+YS + G Sbjct: 121 DGFYLVTDSNKL-VLDEGQNPIRV----------------QGGTLQGRPGVYSFASTDGM 163 Query: 170 VRRENSGISPNIP----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 +++G + +P P+ + ++ G+LE SN + EM + ++ ++ + Sbjct: 164 ---QSAGDNEFVPVAKNGAPVLNREAKLLE-GYLELSNVDMAQEMANTVESSRAYSYVLK 219 Query: 226 LI---DENEKSM 234 ++ DE E+++ Sbjct: 220 MVQSSDEIEQTI 231 >gi|167630298|ref|YP_001680797.1| flagellar hook protein [Heliobacterium modesticaldum Ice1] gi|167593038|gb|ABZ84786.1| flagellar hook protein [Heliobacterium modesticaldum Ice1] Length = 442 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 42/171 (24%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ A + R+ T+ +N++N +T+GF+ +V F++ ++Q I + Sbjct: 1 MMRSLFSGVTALRNHQTRMDTIGNNIANVNTIGFKKSRVTFADA-------LNQTIRGAS 53 Query: 61 S------GKEYLSKEVGSFIST-------------GTELDFALEGDAWFALESPRGIILT 101 S G + +G I+T G D A+EGD +F L+ T Sbjct: 54 SPQGGRGGTNPMQVGLGMNIATMETVFTPASVQGTGKNSDLAIEGDGFFLLDDGGARYYT 113 Query: 102 RDGRFKV--------TDD-----GSLVSASGKYPVLDMASVPIQIPQKDEI 139 R G F + TD+ G + A+G+ +D P+ I KD++ Sbjct: 114 RAGNFDLDTEYNFIRTDNGMKVMGYIADATGE---IDANGDPVPINIKDKL 161 >gi|315637837|ref|ZP_07893027.1| flagellar hook protein [Campylobacter upsaliensis JV21] gi|315482078|gb|EFU72692.1| flagellar hook protein [Campylobacter upsaliensis JV21] Length = 545 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 5/104 (4%) Query: 23 ADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 A+N++N +T GF+ +F ++ + + + Q S L E GS +++ Sbjct: 23 ANNIANVNTTGFKYSNAEFKDIFYSTITSQSTNPAQGGYGSTSASSKLVFEQGSPVASEG 82 Query: 79 ELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKY 121 E D AL+G +F + G+ TR+G FK +G LV + G + Sbjct: 83 EFDVALQGKGFFGVLGADGMPYYTRNGAFKRDANGHLVDSYGNF 126 >gi|227112522|ref|ZP_03826178.1| flagellar basal body rod protein FlgF [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 251 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 34/247 (13%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVASGKEY 65 +G A+Q +LE++ T A+N++N T GFR + S + N + + V + Sbjct: 9 MGGASQ-SLEKQAIT-ANNLANASTPGFR---AQLSALRAVPVNGLTLPTRTLVVASTPG 63 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG +D AL ++W A+++ G TR+G ++ DG L + G+ + Sbjct: 64 ADMTEGVMNYTGRAMDVALPKESWLAVQAADGGEAYTRNGNMEINADGQL-TIQGRVVMG 122 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRENSGI- 177 D PI +P + +I ++ G IS IA +G L V + V R + G+ Sbjct: 123 DGG--PIDVPPQAQI-SISPDGTISALNAGDPPNTIAQLGRLKLVKATGQEVERSDDGLF 179 Query: 178 ---------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITT 225 N+ L++ V + G +E SN N++ M MI ++F I + Sbjct: 180 RLTQQAQQQRGNV----LQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKIIS 235 Query: 226 LIDENEK 232 +D+N + Sbjct: 236 SVDDNAQ 242 >gi|220905353|ref|YP_002480665.1| hypothetical protein Ddes_2091 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869652|gb|ACL49987.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 499 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDID-QK 55 M +S IG L + ++ +N++N T+G++ + FS++ G + N + Q Sbjct: 1 MNSSLYIGATGMKGLAEGMNVTTNNLANVSTIGYKQQGILFSDIFYAEQGGMGNWWNAQD 60 Query: 56 ISFVASGKEYLSKEV---------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 S VA G+ + +V G+ S+ T D A+ G +F + + TR G F Sbjct: 61 NSRVALGQVGMGLQVESVRTLFGQGALESSNTVTDMAISGKGFFQVTDGVDLYYTRAGDF 120 Query: 107 KVTDDGSLVSASG 119 + +G L + SG Sbjct: 121 RPDREGVLRTPSG 133 >gi|229144385|ref|ZP_04272790.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST24] gi|228639016|gb|EEK95441.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST24] Length = 257 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 35/233 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L ++SG + V+ + I+IP+ ++ V G E++Q I + +VD Sbjct: 123 DRYLQTSSGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IGRLQTKTVDAE 178 Query: 167 QG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 V+REN + NI P + +G+ VK LE+SN + EM ++ Sbjct: 179 TNARLVQRENKSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 228 >gi|219685755|ref|ZP_03540566.1| flagellar hook protein FlgE [Borrelia garinii Far04] gi|219672694|gb|EED29722.1| flagellar hook protein FlgE [Borrelia garinii Far04] Length = 442 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 + K+VG +F ST D + G+ +F L+ + + T Sbjct: 54 RPTDSRGGTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|296535149|ref|ZP_06897378.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] gi|296264524|gb|EFH10920.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] Length = 436 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 20/136 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GL AQ A ++ V++N++N+ T G++ + F+E + ++ + A+ +S Sbjct: 15 GLGAQTAA---ITNVSNNVANSQTTGYKRVDTAFAEQLSQSTARLNGSSTVSAAPVATVS 71 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI------------ILTRDGRFKVTDDGSLV 115 + G L A+ G+ FA+ P G TR+G F T +G LV Sbjct: 72 RG-GDISQVENPLALAISGNGLFAVSRPAGTDANGNTVFSPTQFYTRNGDFSKTAEGYLV 130 Query: 116 SASG----KYPVLDMA 127 + SG +PV + A Sbjct: 131 NTSGYALEGWPVANGA 146 >gi|226327743|ref|ZP_03803261.1| hypothetical protein PROPEN_01616 [Proteus penneri ATCC 35198] gi|225203447|gb|EEG85801.1| hypothetical protein PROPEN_01616 [Proteus penneri ATCC 35198] Length = 153 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 19/127 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL AQ + + +++N++N T GF+ + F +++ GA+ ++ S + Sbjct: 11 GLDAQ---QTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMTSEQTNAPSGLQ 67 Query: 61 SGK-------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G E L + G+ T D A++G +F ++ P G TRDG F++ +G Sbjct: 68 IGTGVRPVATERLHSQ-GNLAQTNGTRDVAIKGQGFFHVQLPDGTDAYTRDGSFQMDQNG 126 Query: 113 SLVSASG 119 LV+ SG Sbjct: 127 QLVTTSG 133 >gi|224532235|ref|ZP_03672867.1| flagellar hook protein FlgE [Borrelia valaisiana VS116] gi|224511700|gb|EEF82106.1| flagellar hook protein FlgE [Borrelia valaisiana VS116] Length = 442 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 + K+VG +F ST D + G+ +F L+ + + T Sbjct: 54 RPTDTRGGTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|94264101|ref|ZP_01287900.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455517|gb|EAT05707.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 1058 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 22/135 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S G++ + ++ + DN++N +T F + + F +V + Q ++ + Sbjct: 3 LSSSLYAGISGLSTMGNSMNVLGDNIANVNTTAFNSSRATFQDV-------LSQSVA-TS 54 Query: 61 SGKEYLSKEV-----------GSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRF 106 +G + + V GSF ST T D A+ G+ +F + S + TR G F Sbjct: 55 AGVAQVGRGVTLTTVDGLFAQGSFESTSTATDMAIGGEGFFMMRASGSAEADMFTRAGEF 114 Query: 107 KVTDDGSLVSASGKY 121 + G+L S +G + Sbjct: 115 RFDTQGNLTSPAGHF 129 >gi|51598543|ref|YP_072731.1| flagellar hook protein FlgE [Borrelia garinii PBi] gi|51573114|gb|AAU07139.1| flagellar hook protein [Borrelia garinii PBi] Length = 442 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 + K+VG +F ST D + G+ +F L+ + + T Sbjct: 54 RPTDSRGGTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|300716219|ref|YP_003741022.1| flagellar basal-body rod protein [Erwinia billingiae Eb661] gi|299062055|emb|CAX59171.1| Flagellar basal-body rod protein [Erwinia billingiae Eb661] Length = 251 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 94/245 (38%), Gaps = 35/245 (14%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA LEQ+ T A N++N T GFR V ++ + V + Sbjct: 11 AASQTLEQQAVT-ASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVTASTPGADTS 67 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 GS T LD A+ D W ++ +P G TR+G ++ G L + G + D Sbjct: 68 QGSLDYTERPLDVAVREDGWLSVRAPDGTEAYTRNGNMELNPAGQL-TIQGNLVMGDGG- 125 Query: 129 VPIQIPQKDEI----------FNVGEKGEIS-QKG--KVIATMGLYSVDMSQGFVR---- 171 PI +PQ E+ N G+ + Q G K++ +G G R Sbjct: 126 -PIAVPQGSEVTIAADGSITALNPGDPPNATVQLGRLKLVKAVGSEVTRGDDGLFRLTAT 184 Query: 172 -RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN---SITTLI 227 + G PT + V G LE SN + M MI ++F + + + Sbjct: 185 AQAQRGAVLQTDPT-------IQVMPGVLEGSNVKPVETMVDMIANARRFEMQMKVISSV 237 Query: 228 DENEK 232 DENE+ Sbjct: 238 DENEQ 242 >gi|219684598|ref|ZP_03539541.1| flagellar hook protein FlgE [Borrelia garinii PBr] gi|219671960|gb|EED29014.1| flagellar hook protein FlgE [Borrelia garinii PBr] Length = 442 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 + K+VG +F ST D + G+ +F L+ + + T Sbjct: 54 RPTDSRGGTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|228933056|ref|ZP_04095919.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826657|gb|EEM72428.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 249 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 45/228 (19%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T ++ DF L+ G A F + S LTRDG F + D L + SG Sbjct: 65 VNLVQGNIQMTNSDTDFLLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSV--DMSQGFV 170 + V+ I+IP+ G K + G + IA + +V + + + Sbjct: 125 F-VMGENHERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLI 176 Query: 171 RRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 +REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 177 QRENKSFTLAEGNIADLP----NGVGTVKNYMLENSNVDMTKEMADLM 220 >gi|283784086|ref|YP_003363951.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] gi|282947540|emb|CBG87093.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] Length = 261 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 23/129 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-------SEVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 11 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGMQ 67 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G + ++ G I TRDG ++ Sbjct: 68 FGSGVRIVGTQKTFTE---GNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQINA 124 Query: 111 DGSLVSASG 119 DG L ++ G Sbjct: 125 DGVLTNSQG 133 >gi|260574380|ref|ZP_05842384.1| protein of unknown function DUF1078 domain protein [Rhodobacter sp. SW2] gi|259023276|gb|EEW26568.1| protein of unknown function DUF1078 domain protein [Rhodobacter sp. SW2] Length = 435 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 14/145 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFV 59 + ++ + G+A A RL++++DN++N+ T G++ F S V+ V Sbjct: 3 ISSALSAGVAGLNANATRLASISDNIANSGTYGYKRASTDFESMVITQAAGAGTYSAGGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---------IILTRDGRFKVTD 110 + L E G+ +ST LD A+ G + + G +++T G F+ Sbjct: 63 RASTTRLIDERGALVSTSNALDLAVSGRGMLPVSATAGLGTDLAGTNLMMTTTGSFRPDA 122 Query: 111 DGSLVSASG----KYPVLDMASVPI 131 +G L + SG +P ++P+ Sbjct: 123 NGVLRTQSGLVLLGWPANADGTIPV 147 >gi|332531618|ref|ZP_08407515.1| flagellar hook protein FlgE [Hylemonella gracilis ATCC 19624] gi|332038981|gb|EGI75410.1| flagellar hook protein FlgE [Hylemonella gracilis ATCC 19624] Length = 512 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 23/153 (15%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKIS 57 F GL+ A + L + +N++N +T GF++ + +F +V GA I ++S Sbjct: 3 FQQGLSGLNASSRSLDVIGNNIANANTTGFKSGRAEFGDVFASSIGASGAGTIGIGVEVS 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 V+ +++ G+ T +LD A+ G +FAL+ G +R G FK+ G +V+ Sbjct: 63 TVS--QQFTQ---GNIAITNNDLDVAINGSGFFALQLQDGSRAYSRAGEFKLDPLGYVVT 117 Query: 117 ASGKY-------PVLDMASV---PIQIPQKDEI 139 +G P + SV P+++P I Sbjct: 118 NTGAQVMGFPTDPAGNRTSVTLQPMRMPTSQGI 150 >gi|94986792|ref|YP_594725.1| flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] gi|94731041|emb|CAJ54404.1| Flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] Length = 502 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKIS 57 M S IG L TV++N++N +T+G++ +V F ++ AI + Q + Sbjct: 1 MMGSLFIGATGMKTHSTGLGTVSNNIANANTIGYKQQQVVFQDLFSQDLAIGSTGSQGPN 60 Query: 58 FVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 G + S G+F + D A+ G +F + + TR G F+ T DG Sbjct: 61 QAGMGAQVGSVRTIFTQGAFEPGNSVTDLAIGGKGFFQVTLEDKVHYTRAGNFRFTQDGF 120 Query: 114 LVSASG 119 L SG Sbjct: 121 LNDPSG 126 >gi|134300239|ref|YP_001113735.1| hypothetical protein Dred_2400 [Desulfotomaculum reducens MI-1] gi|134052939|gb|ABO50910.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 856 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF----SEVVGAIKNDID--Q 54 M S G++ + R+ +N++N +T G+++ +V F S+ V + N + Q Sbjct: 1 MLRSLYSGISGMRNHQTRMDVTGNNIANVNTNGYKSSRVNFQDTLSQTVRSAGNGTNPAQ 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 S ++ G + G STG LD ++G+ +F + TR+G F V G L Sbjct: 61 VGSGMSVGSVSNNFTQGPMQSTGRTLDLGIQGNGFFVVSDGTNEFYTREGIFFVDKQGFL 120 Query: 115 VSASG 119 V+ G Sbjct: 121 VNGEG 125 >gi|328545505|ref|YP_004305614.1| flagellar basal-body rod protein FlgG [polymorphum gilvum SL003B-26A1] gi|326415246|gb|ADZ72309.1| Flagellar basal-body rod protein FlgG [Polymorphum gilvum SL003B-26A1] Length = 262 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 24/130 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS------EVVGAIKN----------- 50 G++AQ + + +A+N++N +T ++ + +FS E + + N Sbjct: 10 GMSAQ---QLNVEVIANNIANMNTTAYKRARAEFSDLLYQAERLQGVPNRGGEDPVPEGA 66 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 + + A K ++ G+ +T +LD A++G WF + P G + TR G F Sbjct: 67 QLGLGVKTAAIRKLHMQ---GTLTNTDNKLDLAIDGRGWFQVTGPEGETLYTRAGSFNKN 123 Query: 110 DDGSLVSASG 119 +G LV+ G Sbjct: 124 AEGRLVTLDG 133 >gi|293409442|ref|ZP_06653018.1| flgE [Escherichia coli B354] gi|291469910|gb|EFF12394.1| flgE [Escherichia coli B354] Length = 401 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F + G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRMVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|283833630|ref|ZP_06353371.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] gi|291071313|gb|EFE09422.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] Length = 411 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGAASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F + G + +R+G+FK+ ++ ++V+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRMVDSNGSVFYSRNGQFKLDENRNIVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMAS--VPIQIP 134 + + PI IP Sbjct: 127 TVQQGANPAPITIP 140 >gi|218681813|ref|ZP_03529560.1| flagellar hook protein FlgE [Rhizobium etli CIAT 894] Length = 400 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 22/97 (22%) Query: 34 FRTIKVKFSEVV----------GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFA 83 ++ + FS +V G ++ + Q +S + G T + D A Sbjct: 1 YKAVSTSFSSLVLPSSGGNYNSGGVQTSVRQAVS-----------DQGDISYTTSATDLA 49 Query: 84 LEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + GD +F ++ P G +LTR G F+ D+G+LV+A+G Sbjct: 50 ISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAAG 86 >gi|218290051|ref|ZP_03494218.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239885|gb|EED07073.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 262 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 37/234 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKIS-------- 57 GL+ A + +ADN++N T G+ + F++++ N D + Sbjct: 8 GLSGIQAANAWIDQIADNLANLQTPGYAAEQGTFADLLTMQVYGNATDPSAADRLTPPGW 67 Query: 58 -----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT--D 110 V +G+E + + + TG A+EG +F +++P G + TR G F + Sbjct: 68 RGGTGVVRTGEERDFSQA-AVVRTGIPTHLAIEGPGFFVVQTPSGRMYTRAGNFIWSRRS 126 Query: 111 DGSLVSAS-GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGL-------- 160 DGS V A+ PVL A I P +V G I +G+ + +GL Sbjct: 127 DGSFVLATQAGDPVLSAAGQLIVKPADAPSMSVARDGTIQFGRGRTV-KLGLVEIGEPSS 185 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G R + G++ P + S V +G + SN + M Q++ Sbjct: 186 HLIPEGNGLYRLASGGVA-----VPARNSS---VIQGAVNASNVDETAAMAQLV 231 >gi|302392387|ref|YP_003828207.1| flagellar hook-basal body protein [Acetohalobium arabaticum DSM 5501] gi|302204464|gb|ADL13142.1| flagellar hook-basal body protein [Acetohalobium arabaticum DSM 5501] Length = 557 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 12/130 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S G++ A + ++ + +N+SN +T G++ +V F E++ Sbjct: 1 MMRSMYAGVSGLKAHQTKMDVIGNNISNVNTTGYKGSRVTFKEMLNQTMEGASAPQDGRG 60 Query: 54 ----QKISF-VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 Q+I V+ G + E G+ STG D AL+G+ +F + + TR G Sbjct: 61 GTNPQQIGLGVSLGSIDNNMETGNLQSTGKMTDVALQGEGFFIVNDGTKNLYTRAGNLSF 120 Query: 109 TDDGSLVSAS 118 ++G L ++S Sbjct: 121 DEEGYLTNSS 130 >gi|311033283|ref|ZP_07711373.1| flagellar basal-body rod protein [Bacillus sp. m3-13] Length = 273 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 46/278 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M F A ++ ++R+ +++N+SN +T G++ + + ++Q Sbjct: 1 MLRGFYTATAGMISQQRRMEMMSNNLSNANTPGYKADQGSLRSFPDMLLQRMEQASGTNT 60 Query: 55 -----------KISFVASGKEYLSKEV-GSFISTGTELDFAL-------EGDAWFALE-- 93 ++S +E K G TG + D A+ +F +E Sbjct: 61 FSPMSNPNDPVRLSTGVYLQETKPKHTQGDLRPTGNDTDLAILNQNLPENASVYFTVEQV 120 Query: 94 --SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +PR TR+G F + +G L + SG Y VLD IQI + +F V + G I + Sbjct: 121 DGTPR---YTRNGNFSIDPEGYLTTNSGLY-VLDENDNRIQIRSR-SMF-VQQDGTILEG 174 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGI---SPNIPPTPLEDLSGV-----TVKRGFLEDSN 203 +G+ + V RE +G+ + N+P L++ +G ++ +G +E SN Sbjct: 175 DIRNTRLGIALANNPDELV-REGNGLYRTAENVP--LLQNAAGAPGVNYSISQGHIERSN 231 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ M M + F + +I + SM +A I Sbjct: 232 VDTAQAMSDMTAAYRAFEANQKVIQAYDMSMQKAANEI 269 >gi|46578723|ref|YP_009531.1| flagella basal body rod domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603713|ref|YP_968113.1| hypothetical protein Dvul_2674 [Desulfovibrio vulgaris DP4] gi|46448135|gb|AAS94790.1| flagella basal body rod domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563942|gb|ABM29686.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] gi|311232595|gb|ADP85449.1| flagellar hook-basal body protein [Desulfovibrio vulgaris RCH1] Length = 498 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 7/108 (6%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-------GKEYLSKEVG 71 ++ V +N++N +T+GF+ + + +++ + +S ++ G + + G Sbjct: 19 MNVVGNNLANVNTIGFKQSMMLYQDLMSQTEPTGSAYVSGISQVGLGARVGDVRVLRSQG 78 Query: 72 SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + ++ DFA+ G +F + S + TR G F+ DG LV +G Sbjct: 79 ALLAGSDTTDFAISGKGFFQVTSGQDTHYTRAGNFRFNKDGQLVDPNG 126 >gi|168334552|ref|ZP_02692708.1| hypothetical protein Epulo_06138 [Epulopiscium sp. 'N.t. morphotype B'] Length = 473 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + + ++ + +N++N +T+GF++ +V F++V Sbjct: 1 MMRSLFSGVSGLQSHQLKMDVIGNNIANVNTIGFKSQRVTFADVYYQTTQSATTANEMTG 60 Query: 61 -SGKEYLSKEVGSFIS-------------TGTELDFALEGDAWFALESPRGIILTRDGRF 106 G + +G+ +S T D +E DA F + G TR G F Sbjct: 61 LGGMNAMQIGLGTSVSSIDMLMTPGSAQRTDNPFDLMIEDDAMFIVSDATGTYYTRSGAF 120 Query: 107 KVTDDGSLVSASG 119 +V + G+LV +G Sbjct: 121 RVDERGTLVIPNG 133 >gi|114569239|ref|YP_755919.1| hypothetical protein Mmar10_0688 [Maricaulis maris MCS10] gi|114339701|gb|ABI64981.1| protein of unknown function DUF1078 domain protein [Maricaulis maris MCS10] Length = 461 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 10/133 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G + ++ L++++DN++N +TVG++ F+ + + + + V S Sbjct: 10 GASGLISNSNALASISDNIANVNTVGYKRASAVFTPLYDSDSSTKGYSAAGVNSVARLAI 69 Query: 68 KEVGSFISTGTELDFALEGDAWFALE------SPRGIILTRDGRFKVTDDGSLVSASGKY 121 E G + + D A+ G +F + S + TR GRF +G L + +GKY Sbjct: 70 GESGLLTAGSSPTDLAISGRGFFVVRDDANVNSSDPVSFTRAGRFTPDTNGYLRNDAGKY 129 Query: 122 ----PVLDMASVP 130 PV SVP Sbjct: 130 LSGWPVAADGSVP 142 >gi|34497161|ref|NP_901376.1| flagellar basal body rod protein FlgG [Chromobacterium violaceum ATCC 12472] gi|34103018|gb|AAQ59381.1| flagellar basal-body rod protein flgG [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 44/246 (17%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------------- 57 A + RL+ +A+N++N +T GF+ ++ F ++ ++ K+ Sbjct: 14 AQDARLTAIANNLANVNTTGFKRDRMIFEDLFYQVEKQPGSKVDDNNVSPSGVQMGNGTR 73 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 V S K + G+ +T LD A+ G + ++ G TR G+ ++ DG L + Sbjct: 74 LVGSQKVFTE---GNITTTNQSLDVAIIGQGFLQVKMANGETGYTRAGQLSLSKDGVLQT 130 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------------QKGKVIATMGLY 161 A G P+ I+IP ++ E GE++ Q I GL Sbjct: 131 AQG-LPL----EPEIRIPADATKISISETGEVAVTRGSGTTPEAVDRIQLASFINPAGLL 185 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 ++ + F + + SG + P P G +K+G LE SN + EM MI + + Sbjct: 186 ALGDNL-FQKTDASGDAN--PGDPGNGALG-KLKQGSLEGSNVQVVEEMVDMIAAQRTYE 241 Query: 222 SITTLI 227 T ++ Sbjct: 242 MNTKVL 247 >gi|83955135|ref|ZP_00963791.1| putative flagellar hook protein [Sulfitobacter sp. NAS-14.1] gi|83840464|gb|EAP79637.1| putative flagellar hook protein [Sulfitobacter sp. NAS-14.1] Length = 433 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 + ++ G++ A + + ++++N++N++TVG+R F+ +V A + D +S Sbjct: 3 ISSALQTGVSGLRANSKAVGSISENIANSNTVGYRR---GFAHMVTTTASGGNGDGVLS- 58 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPR-----GIILTRDGRFKVTDDG 112 V + +E G IST + D A+ G+ +FA+ +P +LTR G F + G Sbjct: 59 VNAVEELDISTAGGLISTNSSTDLAIGGNGFFAVSMNPNETVQTNYMLTRAGSFLPDEQG 118 Query: 113 SLVSASGKY 121 +L +A+G Y Sbjct: 119 NLKNAAGYY 127 >gi|24214555|ref|NP_712036.1| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] gi|45657887|ref|YP_001973.1| hook protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195518|gb|AAN49054.1| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] gi|45601128|gb|AAS70610.1| hook protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 287 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 59/264 (22%), Positives = 111/264 (42%), Gaps = 54/264 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEV---------VGAIKN---DI 52 G + + R+ +++N++N D F+ TI F E+ VG + D Sbjct: 8 GANGMIIQQTRMDVISNNLANVDKTAFKRDTTIFKTFPELLLHRFDEDGVGKVPMGSFDT 67 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTR 102 I + G E Y E G+ T D L E A+F++ + RG L+R Sbjct: 68 APVIGKLGLGGEVNEVYTRFEQGAVKKTENPFDLMLQDKPGSEHPAFFSVMTNRGERLSR 127 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-------- 154 G F + +G LV+ G +P+L + PI++ + + F + E GE+ G++ Sbjct: 128 SGAFVMDTNGFLVTPQG-FPLLG-ENGPIRVARGN--FLIKENGEVWINGEIGNDPVNGT 183 Query: 155 ------------IATMGLYSVDMSQGFVRRENSGISPNIP----PTPLEDLSGVTVKRGF 198 + + + +V+ + + +E + P P P + +V +G+ Sbjct: 184 SIDKNRFETPVLLDKIKIRTVENPR-HLDKEGDSFYADTPESGEPVPFDLKDEPSVLQGY 242 Query: 199 LEDSNANSMYEMGQMIHLTQKFNS 222 LE SN + + EM +MI + + + + Sbjct: 243 LEASNVSVVTEMVEMIEVNRSYEA 266 >gi|229166627|ref|ZP_04294379.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH621] gi|228616881|gb|EEK73954.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH621] Length = 259 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 35/233 (15%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + Q ++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 8 IGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIGSVDYA 67 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 68 VVPAAT---HVNLVQGNIQMTNSPTDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTLNS 124 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L +ASG + V+ + I+IP+ ++ V G E++Q IA + +VD Sbjct: 125 DRYLQTASGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDTE 180 Query: 167 QG--FVRRENSGI---SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 V+REN NI P + +G+ VK LE+SN + EM ++ Sbjct: 181 TNARLVQRENKSFILAEGNIADLP--NGTGI-VKNHMLENSNVDMTKEMADLM 230 >gi|327441421|dbj|BAK17786.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 280 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 63/274 (22%), Positives = 118/274 (43%), Gaps = 46/274 (16%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDID----------- 53 G+ AQ +++ + +NM+N +T GF++ + F +++ + N + Sbjct: 11 GMVAQ---QRKTEILTNNMANANTPGFKSDQTTIRSFPDMLMSAVNSTNIPTENGFAIKN 67 Query: 54 -QKISFVASG---KEYLSKEV-GSFISTGTELDFAL-------------EGDAWFALESP 95 + V +G +E + +V G STG D AL G +F LE+ Sbjct: 68 LNPVGAVNAGVYLQETMPNQVQGQIYSTGLNTDIALINSSMPTDEASGNSGQIFFRLENE 127 Query: 96 RGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 G TR+G F + G+LV+ G + VLD +Q D I + G I + V Sbjct: 128 SGTESYTRNGNFTLDGQGNLVNPQGLF-VLDANGERMQF-DNDNI-RISSDGAIFDENDV 184 Query: 155 -IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMY 208 + T+G+ + V+R+N G+ + L G ++++ +LE SN ++ Sbjct: 185 QVGTLGVAFSENPDVLVKRDN-GLFNTLDGVDLPSAYGQANVQFSMQQQYLEGSNVDASK 243 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + ++ +KSM +A+ I Sbjct: 244 AMTDLLTAYRAFEANQKVLQAYDKSMEKAVNEIG 277 >gi|332162900|ref|YP_004299477.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667130|gb|ADZ43774.1| Flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863350|emb|CBX73473.1| hypothetical protein YEW_ES20680 [Yersinia enterocolitica W22703] Length = 243 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 17/206 (8%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 A+N+SN +T GFR + ++V G N +++ V S + GS TG EL Sbjct: 23 ANNLSNVNTQGFRADLERATATQVPGGGYNS---RVA-VLSQNAGVDMTAGSLQETGREL 78 Query: 81 DFALEGDAWFALESPRGIILTRDGRFKVTDDGSL------VSASGKYPVLDMASVPIQIP 134 D A++ A+ S + TR+G+ +V DG L V G VL S + + Sbjct: 79 DVAIKDRGLIAVLSGGREVYTRNGQMEVGPDGDLTINGMPVLGDGGAIVLPAYSA-VSVA 137 Query: 135 QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 I + + G I +V + VD+ + + N G+ N D V + Sbjct: 138 DDGTIAIIPQAGGIKTPAEVDR---IKLVDIPANQLSKNNRGLLVNRRGAAARD-ENVQL 193 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKF 220 LE SN +++ EM I L+++F Sbjct: 194 VSKHLESSNISAISEMTASISLSRQF 219 >gi|310659037|ref|YP_003936758.1| flagellar hook protein [Clostridium sticklandii DSM 519] gi|308825815|emb|CBH21853.1| flagellar hook protein [Clostridium sticklandii] Length = 418 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 19/136 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M S N ++A + R+ + +N++N +T+G+++ +V F + + GA D + Sbjct: 1 MMRSMNSAVSALRNHQLRMDVIGNNIANVNTIGYKSSRVTFKDSLSQMLRGASGPDASRG 60 Query: 56 ISF---VASGKEYLSKEVGSFISTGTE------LDFALEGDAWFALE---SPRGIILTRD 103 + V G + S + + +TG LD + G+ +F + + G+ TR Sbjct: 61 GTNPQQVGLGMDLSS--IDTLFTTGVPDRTDRGLDVMVNGEGFFMVSADGTDNGMYYTRA 118 Query: 104 GRFKVTDDGSLVSASG 119 G F + +DG+LV+A G Sbjct: 119 GNFDIDEDGNLVNADG 134 >gi|83944165|ref|ZP_00956621.1| putative flagellar hook protein [Sulfitobacter sp. EE-36] gi|83845032|gb|EAP82913.1| putative flagellar hook protein [Sulfitobacter sp. EE-36] Length = 433 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 12/129 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 + ++ G++ A + + ++++N++N++TVG+R F+ +V A + D +S Sbjct: 3 ISSALQTGVSGLRANSKAVGSISENIANSNTVGYRR---GFAHMVTTTASGGNGDGVLS- 58 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPR-----GIILTRDGRFKVTDDG 112 V + +E G IST + D A+ G+ +FA+ +P +LTR G F + G Sbjct: 59 VNAVEELDIATAGGLISTNSSTDLAIGGNGFFAVSMNPNETVQTNYMLTRAGSFLPDEQG 118 Query: 113 SLVSASGKY 121 +L +A+G Y Sbjct: 119 NLKNAAGYY 127 >gi|229058421|ref|ZP_04196805.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH603] gi|228719930|gb|EEL71520.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH603] Length = 257 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 33/232 (14%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + Q ++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L +ASG + V+ + I+IP+ ++ V G E++Q I + +VD Sbjct: 123 DRYLQTASGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IGRLQTKTVDAE 178 Query: 167 QG--FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 V+REN + + L DL T VK LE+SN + EM ++ Sbjct: 179 TNARLVQRENKSFT--LAEGNLADLPNGTGIVKNHMLENSNVDMTKEMADLM 228 >gi|333004885|gb|EGK24405.1| flagellar hook protein flgE [Shigella flexneri VA-6] Length = 399 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|52143687|ref|YP_083142.1| flagellar basal body rod protein FlgG [Bacillus cereus E33L] gi|51977156|gb|AAU18706.1| flagellar basal-body rod protein [Bacillus cereus E33L] Length = 257 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 41/236 (17%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ G A F + S LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L + SG + V+ + I+IP+ G K + G + IA + + Sbjct: 123 DRYLQTTSGAF-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKT 174 Query: 163 V--DMSQGFVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 V + + V+REN + + ++DL T VK LE+SN + EM ++ Sbjct: 175 VGAEANNRLVQRENKSFT--LAEGNIDDLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|209521589|ref|ZP_03270287.1| flagellar basal body FlaE domain protein [Burkholderia sp. H160] gi|209497972|gb|EDZ98129.1| flagellar basal body FlaE domain protein [Burkholderia sp. H160] Length = 502 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 27/131 (20%), Positives = 65/131 (49%), Gaps = 12/131 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYLSK-EVGSFIST 76 L + +N++N +TVGF++ +F+++ ++ Q+I E + G+ +T Sbjct: 17 LDVIGNNIANANTVGFKSGTAEFADMYANSVATATSQQIGIGTQLSEVQQQFSQGTITTT 76 Query: 77 GTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------KYPVLDMA 127 L+ A+ G+ +F + + + +R+G F++ +G + +A G +++ A Sbjct: 77 NQALNVAINGNGFFQMSNNGTLTYSRNGVFQLDKNGFITNAEGLDLMGYAANSSGIINTA 136 Query: 128 -SVPIQIPQKD 137 +VP+ +P + Sbjct: 137 QTVPLTVPTAN 147 >gi|290474972|ref|YP_003467856.1| flagellar hook protein [Xenorhabdus bovienii SS-2004] gi|289174289|emb|CBJ81079.1| flagellar biosynthesis; hook protein [Xenorhabdus bovienii SS-2004] Length = 416 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-FVASGKEYLSKEVGS 72 A L + +N++N+ T GF++ F++V + K+S V + K+ GS Sbjct: 12 AAASNLDVIGNNIANSATFGFKSSSAAFADVFSGSDVGLGVKVSGMVKNFKD------GS 65 Query: 73 FISTGTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASG----KYPVLDMA 127 +T +LD A+ +F L+S +R+G+F + D +L++ G YP + A Sbjct: 66 TTTTSRQLDMAITQGGFFRMLDSNGSTFYSRNGQFNMDSDRNLINMQGMKLTGYPAVQGA 125 Query: 128 SVP 130 + P Sbjct: 126 NGP 128 >gi|163744346|ref|ZP_02151706.1| flagellar hook protein FlgE [Oceanibulbus indolifex HEL-45] gi|161381164|gb|EDQ05573.1| flagellar hook protein FlgE [Oceanibulbus indolifex HEL-45] Length = 422 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 12/127 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ IG++ A R+ ++ N++N +TVG+R FSE V +N + + Sbjct: 3 ITSALQIGVSGLQANSSRVQNISSNIANANTVGYRR---TFSEFV--TQNTGSTQAGVLT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES------PRGIILTRDGRFKVTDDGSL 114 + +S G+ + T + D A++GD +F + LTR G F +G L Sbjct: 58 DVRANISTN-GNIVGTNSTTDLAVQGDGFFVVSRNANDPIESNYYLTRAGSFTPDQNGDL 116 Query: 115 VSASGKY 121 +++G + Sbjct: 117 RNSAGYF 123 >gi|295707198|ref|YP_003600273.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium DSM 319] gi|294804857|gb|ADF41923.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium DSM 319] Length = 273 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 35/259 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---FVASG--------- 62 L+Q+L + N+SNT+T G++ F++++ N+ + K + +G Sbjct: 15 LQQQLDVIGHNLSNTNTTGYKARDASFNDMLYQQVNNQEDKGTEKRLTPAGIRQGTGAYL 74 Query: 63 -KEYLSKEVGSFISTGTELDFALEG-DAWFAL---ESPRGIILTRDGRFKVTDDG----S 113 + L+ GSF +T LD A+ + +F + +S + + TRDG F ++ G Sbjct: 75 DQTSLNMMQGSFQNTDKLLDVAVSNPNVYFQVAVNDSQQPVQYTRDGSFHISPQGPNNVK 134 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVIATMGLYSVDMSQGF- 169 LV+ SG+ VL I + + G I + KG T+GL +V Q Sbjct: 135 LVNGSGQ-DVLGENGQAIIFSNAFKDIQIDGSGTITVTTNKGVDQFTLGLTNVQKPQVLE 193 Query: 170 VRRENSGISPN--IPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQM--IHLTQKF 220 + EN P P DL+G V++G LE SN + E+ M +F Sbjct: 194 AKGENLFAFPAEMNQPNMFTDLTGKARETAGVEQGKLEQSNVDLSKELTDMSIAQRAYQF 253 Query: 221 NSITTLIDENEKSMLEAIR 239 NS + I + ++ IR Sbjct: 254 NSRSISIADQMMGLVNGIR 272 >gi|237731007|ref|ZP_04561488.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] gi|226906546|gb|EEH92464.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] Length = 417 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F + G + +R+G+FK+ ++ ++V+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRMVDSNGSVFYSRNGQFKLDENRNIVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMAS--VPIQIP 134 + + PI IP Sbjct: 127 TVQQGANPAPITIP 140 >gi|94267501|ref|ZP_01290900.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451978|gb|EAT02688.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 1069 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 22/135 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S G++ + ++ + DN++N +T + + F +V + Q ++ + Sbjct: 3 LSSSLYAGISGLSTMGNSMNVLGDNIANVNTTAYNASRATFQDV-------LSQSVA-TS 54 Query: 61 SGKEYLSKEV-----------GSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRF 106 +G + + V GSF ST T D A+ G+ +F + S + TR G F Sbjct: 55 AGSAQVGRGVTLTTVDGLFAQGSFESTSTATDMAIGGEGFFMMRGSGSAEADMFTRAGEF 114 Query: 107 KVTDDGSLVSASGKY 121 + G+L++ +G + Sbjct: 115 RFDTQGNLINPAGHF 129 >gi|303248690|ref|ZP_07334944.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] gi|302489946|gb|EFL49872.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] Length = 549 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 17/136 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKIS 57 + T+ G++ +A +++++ +N++N +T GF++ + F ++ A + +DQ Sbjct: 5 LNTAMWSGVSGLMANSTKMTSIGNNLANVNTYGFKSARTDFVTLMSATIGTASGVDQVGR 64 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--------------ILTRD 103 V G G TGT D A+ G+ +F ++ + TR Sbjct: 65 GVRVGSVVTDYSQGGLEITGTNTDMAINGNGFFMVKQKSSVGSNGKMLNTGNQTMYYTRA 124 Query: 104 GRFKVTDDGSLVSASG 119 G F ++G L S +G Sbjct: 125 GDFHFDENGYLSSTTG 140 >gi|221635451|ref|YP_002523327.1| flagellar basal-body rod protein FlgG [Thermomicrobium roseum DSM 5159] gi|221158111|gb|ACM07229.1| flagellar basal-body rod protein FlgG [Thermomicrobium roseum DSM 5159] Length = 259 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 57/246 (23%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--------------VGAIKNDIDQKISFV 59 A + RL T+A N++N +T GF+ + F+ V +G + I + Sbjct: 14 AQQVRLDTIAHNLANLETDGFKAARADFTAVPPQEYRVARAGEAPLGPVP--IGSGVELS 71 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGII-LTRDGRFKVTDDGSLVSA 117 A+ +++ +G TG D AL G D + A E P G R GR + G LV Sbjct: 72 ATTRQF---TLGPVEVTGDPFDLALAGPDTFVATELPDGTTAFRRSGRLSIDATGRLVFE 128 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQG--- 168 G + P+ +P ++ + G + S + I + L QG Sbjct: 129 DGS-----LLQPPLVLPAGAQLDRIAPDGTVFVRAAGSGDAQPIGRLELVRFPNPQGLLA 183 Query: 169 -----FVRRENSGI----SP---NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 ++ E +G +P N PP LSGV E SN + + +M Q+I Sbjct: 184 AGQGRWIATEAAGQPETGAPGEGNWPPV----LSGVR------EHSNVDLVDQMTQLIMA 233 Query: 217 TQKFNS 222 + + + Sbjct: 234 QRAYTA 239 >gi|187734244|ref|YP_001880752.1| flagellar hook protein FlgE [Shigella boydii CDC 3083-94] gi|187431236|gb|ACD10510.1| flagellar hook protein FlgE [Shigella boydii CDC 3083-94] Length = 402 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 18/134 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N+ N+ T GF++ F+++ K + K++ + +++ G+ Sbjct: 12 AAATNLDVIGNNIVNSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--QDFTD---GTT 66 Query: 74 ISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----------ASGKYP 122 +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ A+G P Sbjct: 67 TNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPP 126 Query: 123 VLDMASVP--IQIP 134 + + P I IP Sbjct: 127 TIQQGANPTNISIP 140 >gi|229069323|ref|ZP_04202613.1| Flagellar basal-body rod protein flgG [Bacillus cereus F65185] gi|229078954|ref|ZP_04211506.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock4-2] gi|228704368|gb|EEL56802.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock4-2] gi|228713810|gb|EEL65695.1| Flagellar basal-body rod protein flgG [Bacillus cereus F65185] Length = 257 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 41/244 (16%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L ++SG + V+ + I+IP+ ++ V G E++Q I + +VD Sbjct: 123 DRYLQTSSGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IGRLQTKTVDAE 178 Query: 167 QG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG------QMIH 215 V+REN + N+ P + +G+ VK LE+SN + EM +MI Sbjct: 179 TNARLVQRENKSFTLAEGNVANLP--NGTGI-VKNHMLENSNVDMTKEMADLMTDQKMIQ 235 Query: 216 LTQK 219 +Q+ Sbjct: 236 ASQR 239 >gi|228984857|ref|ZP_04145027.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774807|gb|EEM23203.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 257 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 45/238 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVINIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ G A F + S LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L + SG + V+ + I+IP+ G K + G + IA + + Sbjct: 123 DRYLQTTSGAF-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKT 174 Query: 163 V--DMSQGFVRRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 V + + V+REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 175 VGAEANNRLVQRENKSFTLAEGNIADLP----NGVGTVKNYMLENSNVDMTKEMADLM 228 >gi|242064088|ref|XP_002453333.1| hypothetical protein SORBIDRAFT_04g003970 [Sorghum bicolor] gi|241933164|gb|EES06309.1| hypothetical protein SORBIDRAFT_04g003970 [Sorghum bicolor] Length = 562 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 34 FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE 93 +R + V F + G+IK KI F+A+GKEY++ E+G ++D G+ + Sbjct: 167 YRGVIVYFRVIDGSIKKG--DKICFMANGKEYVADEIGVLSPNQMQVDELYAGEVGYLSA 224 Query: 94 SPRGIILTRDG----RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 S R + R G + D +L S P++ PI Q +E+ EK +++ Sbjct: 225 SIRSVADARVGDTITHYSKKADHALPGYSQATPMVFCGLFPIDADQFEELREALEKLQLN 284 >gi|237799636|ref|ZP_04588097.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022491|gb|EGI02548.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. oryzae str. 1_6] Length = 121 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 18/95 (18%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ ++ S Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVM--------PSRAYAMSE 60 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG 97 + G+ + TG ELD A++GD W A+++P G Sbjct: 61 RPGTDFSAGAMVQTGRELDIAVKGDGWIAVQTPDG 95 >gi|41351258|emb|CAE47476.1| flagellar hook protein [Helicobacter hepaticus] Length = 693 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 16/132 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQKISF---VASGKEYLS 67 L ++N++N +TVGF+ + F +++ IK N + + F + G + + Sbjct: 5 LDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFSVGLGVGIDATT 64 Query: 68 K--EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVSASGKYPV 123 K G+ +T + D A+EGD +F + RG TR+G F +G+LV+ +G Y V Sbjct: 65 KVFSQGNTQNTDVKTDVAIEGDGFFIISPDRGTTHNYTRNGEFLFDANGNLVT-TGGYVV 123 Query: 124 LDMASVPIQIPQ 135 P++ + Sbjct: 124 QGWVRPPLEAAE 135 >gi|254464969|ref|ZP_05078380.1| flagellar hook protein FlgE [Rhodobacterales bacterium Y4I] gi|206685877|gb|EDZ46359.1| flagellar hook protein FlgE [Rhodobacterales bacterium Y4I] Length = 435 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 31/138 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ A RL++++DN++N+ T G++ ++ F +V Sbjct: 3 ISSSLNAGVSGLSANASRLASISDNIANSSTRGYKRVQTDFHSMV------------LSG 50 Query: 61 SGKEY-----------LSKEVGSFISTGTELDFALEGDAWFALES--------PRGIILT 101 SG Y L E G +ST D A+ G + S ++LT Sbjct: 51 SGGTYSAGGVRTTNVRLIDERGPLVSTNNATDLAVRGRGMLPVASITEVEAGGSPSMMLT 110 Query: 102 RDGRFKVTDDGSLVSASG 119 G F+ G L + SG Sbjct: 111 STGSFRTDSSGYLSTESG 128 >gi|162421354|ref|YP_001604846.1| flagellar basal body rod protein FlgF [Yersinia pestis Angola] gi|162354169|gb|ABX88117.1| flagellar basal-body rod protein FlgF [Yersinia pestis Angola] Length = 243 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 39/217 (17%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG------SFI 74 A+N++N++T GFR K ++V+G +S LS+ G S Sbjct: 23 ANNLANSNTQGFRADLEKATATQVMGG----------GYSSRVAVLSQNAGVDMTPASLQ 72 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG +LD AL+ A+ S TR+G+ V+ +G+L PVL PI +P Sbjct: 73 ETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVSAEGALT--INGLPVLGDGG-PIVLP 129 Query: 135 QKDEIFNVGEKGEISQKGKVIATMG----------LYSVDMSQGFVRRENSG-ISPNIPP 183 ++ + G I+ +I G + VD+ +R+ N G + N P Sbjct: 130 PYSA-LSIADDGTIA----IIPQAGGSKTPEEIERIKLVDIPANQLRKNNRGLLVSNRGP 184 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ V V LE SN +++ EM I L+++F Sbjct: 185 AARDET--VQVVNKHLESSNVSAISEMIASISLSRQF 219 >gi|114777402|ref|ZP_01452399.1| hypothetical protein SPV1_13919 [Mariprofundus ferrooxydans PV-1] gi|114552184|gb|EAU54686.1| hypothetical protein SPV1_13919 [Mariprofundus ferrooxydans PV-1] Length = 467 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 20/126 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G + + + + V DN++N +++GF++ V F++V + Q I ++G + + Sbjct: 10 GASGLTSFGEAVRVVGDNIANVNSIGFKSQSVSFTDV-------LSQTIGVSSTGSQQVG 62 Query: 68 KEV-----------GSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSL 114 V GS +T + D A+ G+ FAL P +R G F++ + +L Sbjct: 63 NGVKIGTISRNQMQGSIQNTSSATDMAINGNGLFALRDPATNQTSYSRAGSFQLDKNFNL 122 Query: 115 VSASGK 120 + G Sbjct: 123 IDGGGN 128 >gi|37525841|ref|NP_929185.1| flagellar hook protein FlgE [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785270|emb|CAE14211.1| Flagellar hook protein FlgE [Photorhabdus luminescens subsp. laumondii TTO1] Length = 404 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 27/141 (19%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N T GF++ V FS++ + + K+S V + + G+ Sbjct: 12 AAAGNLDVIGNNIANAATYGFKSSTVAFSDIFAGSQVGLGVKVSGVNQ-----NFKDGTP 66 Query: 74 ISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG----KYPVLDMAS 128 +T LD A+ +F ++ GI +R+G+FK+ ++ ++++ G YP AS Sbjct: 67 TTTNRTLDLAITQGGFFRMQGGDGGIYYSRNGQFKMDENRNIINMQGMKLTGYPA---AS 123 Query: 129 V--------------PIQIPQ 135 V PI IPQ Sbjct: 124 VNGGAPEIQKGANPEPITIPQ 144 >gi|189426344|ref|YP_001953521.1| hypothetical protein Glov_3295 [Geobacter lovleyi SZ] gi|189422603|gb|ACD97001.1| protein of unknown function DUF1078 domain protein [Geobacter lovleyi SZ] Length = 296 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 47/88 (53%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ LA + L+ + +N+SN++T+GF+ ++ FS+++ A + Q V K Sbjct: 10 GVSGLLANAEGLNVIGNNLSNSNTIGFKGGRMLFSDLLSAPIGNNSQVGRGVQIQKVDNL 69 Query: 68 KEVGSFISTGTELDFALEGDAWFALESP 95 GS ST D A++GD +F+ P Sbjct: 70 FSQGSLESTTVVTDLAIQGDKFFSFAVP 97 >gi|257484946|ref|ZP_05638987.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 120 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 18/95 (18%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ ++ S Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVM--------PSRAYAMSE 60 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG 97 + G+ + TG ELD A++GD W A+++P G Sbjct: 61 RPGTDFSAGAMVETGRELDIAVKGDGWIAVQTPDG 95 >gi|228938885|ref|ZP_04101485.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971766|ref|ZP_04132387.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978375|ref|ZP_04138752.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis Bt407] gi|228781392|gb|EEM29593.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis Bt407] gi|228787856|gb|EEM35814.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820734|gb|EEM66759.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 249 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 35/223 (15%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + G + N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGVVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T + DF L+ A +F LTRDG F + D L ++SG Sbjct: 65 VNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQTSSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQG--FVRREN 174 + V+ + I+IP+ ++ V G EI+Q IA + +VD V+REN Sbjct: 125 F-VMGENNERIRIPEGAKVA-VQADGTLYDEITQNN--IARLQTKTVDAETNARLVQREN 180 Query: 175 SGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + NI P + +G+ VK LE+SN + EM ++ Sbjct: 181 KSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 220 >gi|183220587|ref|YP_001838583.1| flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910695|ref|YP_001962250.1| flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775371|gb|ABZ93672.1| Endoflagellar hook protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779009|gb|ABZ97307.1| Flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 464 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 20/134 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M S G++ + R+ + +N+SN +T GF+T +V F +++ GA ++ +++ Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELQGA--SEPNER 58 Query: 56 I-----------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 I S +A+ + +++ G+ +TG D A+ G+ +F ++ TR G Sbjct: 59 IGGTNPKQVGLGSLIAAIDKIMTQ--GALQTTGKNTDLAVSGEGFFVVKDGDKQFYTRAG 116 Query: 105 RFKVTDDGSLVSAS 118 F V +G V+ + Sbjct: 117 AFNVDKNGFYVNPA 130 >gi|323341378|ref|ZP_08081622.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] gi|323091255|gb|EFZ33883.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] Length = 301 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 22/141 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + ++ +A+N+SN +T GF+ +V F ++V +N + Sbjct: 1 MLRSLYSGVSGMKGFQTQMDVIANNVSNVNTHGFKAGRVLFQDMVS--QNTTSASAPGLG 58 Query: 61 ----SGKEY-LSKEVGS---------FISTGTELDFALEGDAWFAL------ESPRGIIL 100 +GK+ L + G+ STG ++D ++G+ +F + +S Sbjct: 59 LGGVNGKQVGLGMQTGAVDTMTGRGNMESTGQDMDLYIQGEGYFVVRKEATADSDAVTYY 118 Query: 101 TRDGRFKVTDDGSLVSASGKY 121 TRDG FK G LV+++G + Sbjct: 119 TRDGAFKRDSQGLLVNSNGYH 139 >gi|15895423|ref|NP_348772.1| flagellar hook protein FlgE [Clostridium acetobutylicum ATCC 824] gi|15025147|gb|AAK80112.1|AE007716_1 Flagellar hook protein FlgE [Clostridium acetobutylicum ATCC 824] gi|325509569|gb|ADZ21205.1| Flagellar hook protein FlgE [Clostridium acetobutylicum EA 2018] Length = 423 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 38/143 (26%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKN----DIDQKISFVASGK 63 + +L V N++N+ T +++ + FS+ + GA N + +Q V S Sbjct: 16 QNKLDIVGSNIANSSTTAYKSQSINFSDAISETIKGASGATANYGGVNPEQITLGVNSSA 75 Query: 64 EYLSKEVGSFISTGTELDFAL-EGDAWFALES-----------------------PRG-- 97 + GS +TG LD A+ +GD +F + S P G Sbjct: 76 IITNTASGSVNTTGRNLDVAITDGDGYFMVASGANMADESECINVSTTDHSITSTPSGTD 135 Query: 98 IILTRDGRFKVTDDGSLVSASGK 120 I TRDG F + ++G+LV+A G+ Sbjct: 136 ISYTRDGSFNLDNEGNLVTADGR 158 >gi|89895710|ref|YP_519197.1| hypothetical protein DSY2964 [Desulfitobacterium hafniense Y51] gi|89335158|dbj|BAE84753.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 383 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 16/112 (14%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQKI---------SFVASGK 63 ++ + +N++N +T GF+ +V FS ++ GA +Q S V+S Sbjct: 18 KMDVIGNNIANVNTTGFKRSRVTFSTMLSQTMKGAGSPSANQGGTNPAQIGLGSMVSSID 77 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + ++ GS STG + D ++G +F L++ + +R G F DDG+L Sbjct: 78 QIMTP--GSSQSTGKDTDMMIQGKGFFVLQNNGETVYSRAGAFTQDDDGTLT 127 >gi|238751762|ref|ZP_04613250.1| Flagellar hook protein FlgE [Yersinia rohdei ATCC 43380] gi|238710033|gb|EEQ02263.1| Flagellar hook protein FlgE [Yersinia rohdei ATCC 43380] Length = 430 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 67/135 (49%), Gaps = 18/135 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N++N+ T GF++ V F+++ + + +++ + +++ G+ Sbjct: 12 AASSNLDVIGNNIANSATSGFKSSSVSFADMFAGSQAGMGVQVAGIT--QDF---NDGTA 66 Query: 74 ISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ +F ++ S GI R+G+FK+ ++ ++++ A+G P Sbjct: 67 TTTNRRLDIAISQSGFFRMQDSTGGIYYARNGQFKLDENRNIINMQGLSLTGYPATGTPP 126 Query: 123 VLDMASVPI--QIPQ 135 + + PI IPQ Sbjct: 127 TVKQGANPIALSIPQ 141 >gi|328543156|ref|YP_004303265.1| flagellar basal-body rod FlgG [polymorphum gilvum SL003B-26A1] gi|326412902|gb|ADZ69965.1| Flagellar basal-body rod FlgG [Polymorphum gilvum SL003B-26A1] Length = 259 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 15/131 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKISFV 59 + +I A E + +++N++N T G++ + F +++ + D + V Sbjct: 3 ALHIAATGMKAQELNVEVISNNVANMRTTGYKRQRADFQDLLYQNLRRMGTDSSNAGTIV 62 Query: 60 ASG-------KEYLSKEV---GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 +G K + + G+ TG ++D A+ G+ +F ++ P G TRDG F+ Sbjct: 63 PTGVQIGSGVKTAATARIMTQGTIEQTGKDMDVAIRGEGFFQIQLPDGTTAYTRDGSFER 122 Query: 109 TDDGSLVSASG 119 +G+LV+ G Sbjct: 123 DANGTLVTIDG 133 >gi|50954410|ref|YP_061698.1| flagellar hook protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950892|gb|AAT88593.1| flagellar hook protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 390 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 15/124 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK------NDIDQKISFVAS 61 GL AQ + L A+N++N +T GF+ V+F + + + D+ + A Sbjct: 11 GLQAQ---QTMLDVTANNIANVNTAGFKASSVQFEDALSQVTRTASAPTDVIGGTTPAAV 67 Query: 62 GKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 G + + G+ +TG + L GD +F + S TR G F D G+LV Sbjct: 68 GLGVRAAGIDTDWTQGATQTTGKATNLTLNGDGFFVIRSAGQTQYTRAGNFTTDDSGTLV 127 Query: 116 SASG 119 + G Sbjct: 128 TPDG 131 >gi|323492337|ref|ZP_08097490.1| flagellar basal body rod protein [Vibrio brasiliensis LMG 20546] gi|323313384|gb|EGA66495.1| flagellar basal body rod protein [Vibrio brasiliensis LMG 20546] Length = 243 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 27/211 (12%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 ++N+SN DT GFR + S + ++ + V + + G + TG LD Sbjct: 23 SNNLSNADTAGFRADMERVSSI--PLQGSGFDGRTMVVTNSASTRFDEGDIVKTGRPLDV 80 Query: 83 ALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 A+ GD + +++ G TR G KV G+L S +G + VL P+ +P ++ Sbjct: 81 AVMGDGYLTVQTADGQEAYTRAGNIKVDPFGAL-SING-FAVLGDGG-PLILPDYQKV-- 135 Query: 142 VGEKGEISQKGKV------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 EIS++G++ + T+ L + +Q + + + + ++ P Sbjct: 136 -----EISERGRISVVPPGGGAELEVGTLKLVKPETNQ--LEKHSDSLLHSVDGNPFVAD 188 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + +E SN +++ E+ ++ LT+ F Sbjct: 189 ETVQLAPEHIEGSNVSAIDELLNVMSLTRNF 219 >gi|163793271|ref|ZP_02187246.1| flagellar basal body FlaE domain protein [alpha proteobacterium BAL199] gi|159181073|gb|EDP65588.1| flagellar basal body FlaE domain protein [alpha proteobacterium BAL199] Length = 433 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 7/121 (5%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++A A Q ++DN++N +T+G++ +F +V + V + Sbjct: 10 GVSALAAQSQAFGIISDNIANVNTIGYKDTTARFQTLVTESSSSSRYSPGGVLARPFVNP 69 Query: 68 KEVGSFISTGTELDFALEGDAWF-------ALESPRGIILTRDGRFKVTDDGSLVSASGK 120 ++ G T + D +L GD +F L S +LTR G F ++G+LV+A+G Sbjct: 70 EKQGLLQGTTSNTDISLVGDGFFIVNENDDPLTSGGEYLLTRAGSFTEDEEGNLVNAAGF 129 Query: 121 Y 121 + Sbjct: 130 F 130 >gi|331666548|ref|ZP_08367422.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331065772|gb|EGI37656.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] Length = 261 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-------SEVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 11 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGLQ 67 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G + ++ G I TRDG +V Sbjct: 68 FGSGVRIVGTQKTFTE---GNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNA 124 Query: 111 DGSLVSASG 119 DG L + G Sbjct: 125 DGVLTISQG 133 >gi|318604253|emb|CBY25751.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. palearctica Y11] Length = 243 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 17/206 (8%) Query: 23 ADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 A+N++N +T GFR + ++V G N +++ V S + GS TG EL Sbjct: 23 ANNLANVNTQGFRADLERATATQVPGGSYNS---RVA-VLSQNAGVDMTAGSLQETGREL 78 Query: 81 DFALEGDAWFALESPRGIILTRDGRFKVTDDGSL------VSASGKYPVLDMASVPIQIP 134 D A++ A+ S + TR+G+ +V DG L V G VL S + + Sbjct: 79 DVAIKDRGLIAVLSGGREVYTRNGQMEVGPDGDLTINGMPVLGDGGAIVLPAYSA-VSVA 137 Query: 135 QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 I + + G I +V + VD+ + + N G+ N D V + Sbjct: 138 DDGTIAIIPQAGGIKTPAEVDR---IKLVDIPANQLSKNNRGLLVNRRGAAARD-ENVQL 193 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKF 220 LE SN +++ EM I L+++F Sbjct: 194 VSKHLESSNISAISEMTASISLSRQF 219 >gi|125972995|ref|YP_001036905.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|256004792|ref|ZP_05429767.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281417206|ref|ZP_06248226.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|125713220|gb|ABN51712.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|255991242|gb|EEU01349.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281408608|gb|EFB38866.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316940769|gb|ADU74803.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 440 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 20/137 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDID-- 53 M S G++ A + ++ + +N++N +TVGF++ +V F EV GA D Sbjct: 1 MMRSMFSGVSGLQAHQTKMDVIGNNVANVNTVGFKSSRVTFQEVFSQTLKGASSPDPTTG 60 Query: 54 ------QKISF---VASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGIILTR 102 ++ VA+ +++ GS T D A+EGD +F ++ S TR Sbjct: 61 RGGTNPMQVGLGLGVATIDTLMTR--GSVQRTDNPTDLAIEGDGFFIVKGGSSDTFKFTR 118 Query: 103 DGRFKVTDDGSLVSASG 119 G F + G+LV+ SG Sbjct: 119 AGNFGIDRLGNLVTGSG 135 >gi|32490791|ref|NP_871045.1| hypothetical protein WGLp042 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165997|dbj|BAC24188.1| flgF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 246 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ R S A+N+SN T GF+ + S+ + ++ D F Sbjct: 1 MDKAIYTAMNAAISYADRHSINANNLSNISTSGFK-FHIPSSKYI-TVRGDSFITRVFPT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + +K G+ +G LD A+ G+ W A++ G T++G K+ ++G L + Sbjct: 59 ATTSTHNKNPGNVNYSGNNLDVAILGEGWLAIQLEDGSEGYTKNGHIKINEEGKLTIKN- 117 Query: 120 KYPVL 124 +PV+ Sbjct: 118 -FPVI 121 >gi|196018952|ref|XP_002118898.1| hypothetical protein TRIADDRAFT_62888 [Trichoplax adhaerens] gi|190577813|gb|EDV18617.1| hypothetical protein TRIADDRAFT_62888 [Trichoplax adhaerens] Length = 140 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G T E D+A+EGD +F LE I TR GR+++ + + S +G Y Sbjct: 65 GEISETKKEFDYAIEGDGFFPLECGEQIKFTRAGRYELDNQDFIKSPNGCY 115 >gi|167770210|ref|ZP_02442263.1| hypothetical protein ANACOL_01553 [Anaerotruncus colihominis DSM 17241] gi|167667532|gb|EDS11662.1| hypothetical protein ANACOL_01553 [Anaerotruncus colihominis DSM 17241] Length = 556 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 14/128 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKN---DIDQKISFVASGK 63 G+A + +QR+ + +N++N +T GF++ +V F ++ I+N + SG Sbjct: 4 GVAGMKSHQQRMDVIGNNIANVNTYGFKSSRVTFRDMFYQNIRNASAGTSTRGGVSPSGV 63 Query: 64 EYLSK--------EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD-DGS 113 Y S+ S STG LD A+ GD +F ++ G TR G + G Sbjct: 64 GYGSQIASIDKLMTQSSMTSTGQPLDCAITGDGFFQVQDSDGNKFYTRAGMLDIDQATGY 123 Query: 114 LVSASGKY 121 LV +G + Sbjct: 124 LVDLNGYF 131 >gi|304397204|ref|ZP_07379083.1| fagellar hook-basal body protein [Pantoea sp. aB] gi|304355353|gb|EFM19721.1| fagellar hook-basal body protein [Pantoea sp. aB] Length = 418 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 + G+ +T LD AL G+ +F + +S G+ +R+G+ + + +LV+ G Sbjct: 58 -IQNFNDGATTTTSRGLDVALSGNGFFRMTDSSGGVFYSRNGQLTLDANRNLVNTQGLNV 116 Query: 120 -KYPV 123 YP Sbjct: 117 TGYPA 121 >gi|149178721|ref|ZP_01857304.1| flagellar hook protein FlgE [Planctomyces maris DSM 8797] gi|148842419|gb|EDL56799.1| flagellar hook protein FlgE [Planctomyces maris DSM 8797] Length = 563 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 24/182 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE------VVGAIKNDIDQ 54 + ++ N L E + + +N++N T GF+ V F+ VG+ + Sbjct: 3 LTSALNTSLGGLSLNETSIDVLGNNIANAGTNGFKASNVLFTTQLSRTLSVGSRPTTSNG 62 Query: 55 KISFVASGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G LS + GS ++ + D A++GD +F L+ P G + +R+G F++ Sbjct: 63 GTNPRQVGLGALSASIRKDFTQGSVTNSTSPSDLAIQGDGFFILDGPDGQVYSRNGNFEL 122 Query: 109 TDDGSLVSASG----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 L + SG + ++ I+IP D NV + + Q G + Sbjct: 123 NSQSLLTNQSGFKVQGYGVDEDFNLVTTTLTDIEIPLGD--LNVAQATQNVQVGGALLPT 180 Query: 159 GL 160 G+ Sbjct: 181 GV 182 >gi|310816852|ref|YP_003964816.1| flagellar hook protein FlgE [Ketogulonicigenium vulgare Y25] gi|308755587|gb|ADO43516.1| flagellar hook protein FlgE [Ketogulonicigenium vulgare Y25] Length = 432 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 19/133 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFV 59 + +S N G+A A +L+T++DN++N+ T G++ + +F + V+G+ + Sbjct: 3 ISSSMNAGVAGLSANANKLATISDNIANSSTNGYKRAQTEFYAMVIGS------SSTKYT 56 Query: 60 ASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI--------ILTRDGRFK 107 A G + V G +ST D A+ G + + + I +T G F Sbjct: 57 AGGVRTTATRVIDERGPLVSTSNATDIAISGRGFLPVTTLSAIEAGGALPFQMTTTGSFS 116 Query: 108 VTDDGSLVSASGK 120 G L +ASG Sbjct: 117 PNAAGYLTTASGH 129 >gi|300117306|ref|ZP_07055096.1| flagellar basal body rod protein FlgG [Bacillus cereus SJ1] gi|298725141|gb|EFI65793.1| flagellar basal body rod protein FlgG [Bacillus cereus SJ1] Length = 257 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 45/238 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ G A F + S LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L + SG + V+ + I+IP+ G K + G + IA + + Sbjct: 123 DRYLQTTSGAF-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKT 174 Query: 163 V--DMSQGFVRRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 V + + ++REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 175 VGAEANNRLMQRENKSFTLAEGNIADLP----NGVGTVKNYMLENSNVDMTKEMADLM 228 >gi|283850852|ref|ZP_06368138.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] gi|283573775|gb|EFC21749.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] Length = 551 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 33/144 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + TS G++ LA ++ST+ +N++N +TVGF+ + F +++ A +I A Sbjct: 5 LGTSMWSGVSGLLANSTKMSTIGNNLANVNTVGFKGARTDFMDLMSA---NIG-----TA 56 Query: 61 SGKEYLSK--EVGSFIS---------TGTELDFALEGDAWFALE-----SPRGIIL---- 100 +G + + + VG+ +S T LD A+ G+ +F ++ G +L Sbjct: 57 AGDKQIGRGVRVGTVVSDYSQGGLETTSNSLDMAINGNGFFMVKQKSQVGSNGKMLNTGN 116 Query: 101 -----TRDGRFKVTDDGSLVSASG 119 +R G F DG LV+ G Sbjct: 117 QTNYYSRAGNFSFDSDGYLVTPQG 140 >gi|330943209|gb|EGH45616.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. pisi str. 1704B] Length = 101 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 18/95 (18%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ + + ++ G Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVMPSRAYAMSER-----PG 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG 97 ++ G+ + TG ELD A++GD W A+++P G Sbjct: 64 TDF---SAGAMVQTGRELDIAVKGDGWIAVQTPDG 95 >gi|163802603|ref|ZP_02196495.1| flagellar hook protein E [Vibrio sp. AND4] gi|159173686|gb|EDP58505.1| flagellar hook protein E [Vibrio sp. AND4] Length = 437 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 12/112 (10%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-----EVGSF 73 L+T ++N++N +T GF+ + +F +V N + G S+ GS Sbjct: 16 LNTTSNNIANANTYGFKESRAEFGDV---YSNSLFSNAKTTPGGGAQASQVAQQFHEGSS 72 Query: 74 ISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASGKY 121 I T +D + G +F++ +P+ +TR+G F + D +V+A+ ++ Sbjct: 73 IYTNNPMDLRISGTGFFSVAKERLTPQQNEMTRNGAFHLNKDNYMVTANDEF 124 >gi|310659663|ref|YP_003937384.1| flagellar basal body rod protein [Clostridium sticklandii DSM 519] gi|308826441|emb|CBH22479.1| putative Flagellar basal body rod protein [Clostridium sticklandii] Length = 372 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 7/178 (3%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G+ T L A+EG +F + + I +R+G F + +G LV SG VL + Sbjct: 194 GNLDPTENPLHVAIEGKGFFKILDMQDNQIKYSRNGGFSINPEGILVDYSGNV-VLSASD 252 Query: 129 VPIQIPQKDEIFNVGEKGEI----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 I +P+ ++ + G I + + I T+G+ ++ ++ +++ S ++ Sbjct: 253 NEISVPEGASKIDIDKFGNIVATVDGEPEEIDTLGVVNIANTESMIKQGESYLTMADGIE 312 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E V +G+LE SN + + EM +MI+L + + S +I + M +A I Sbjct: 313 ADEAEFDGQVLQGYLEGSNVDIISEMAEMINLLRGYESGQKVIRSYDDIMSKAANEIG 370 >gi|297183504|gb|ADI19634.1| flagellar hook protein flge [uncultured delta proteobacterium HF0770_45N15] Length = 494 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 11/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--VAS 61 S G + + + +N+SN +T GF+ + F +++G ND Q SF V++ Sbjct: 6 SLQTGASGVKTYGKAMQVTGNNISNVNTFGFKRNIIAFEDLLG---NDYPQGRSFTKVSN 62 Query: 62 GKEYLSKEV----GSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLV 115 G + S E+ G+ ST D A+ G +F + P TR+G+ DG L Sbjct: 63 GVKIGSVEMEVSQGALESTQLTTDLAIAGGGYFTVIDPSTSNEYFTRNGQMSYDKDGFLA 122 Query: 116 SASG 119 + G Sbjct: 123 TPRG 126 >gi|300817268|ref|ZP_07097486.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300530244|gb|EFK51306.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] Length = 261 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-------SEVVGAI--KNDI------ 52 GL+AQ + +S +A+N++N +T GF+ +V F E GA+ +N+I Sbjct: 11 GLSAQ---DAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNNIMPTGLQ 67 Query: 53 -DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + V + K + G+ +T ++ A+ G + ++ G I TRDG +V Sbjct: 68 FGSGVRIVGTQKTFTE---GNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNLQVNA 124 Query: 111 DGSLVSASG 119 DG L + G Sbjct: 125 DGVLTISQG 133 >gi|56551506|ref|YP_162345.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis ZM4] gi|241761150|ref|ZP_04759239.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752887|ref|YP_003225780.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543080|gb|AAV89234.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis ZM4] gi|241374769|gb|EER64230.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552250|gb|ACV75196.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 249 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + Q+++T A N+SNT+T GF K + S + + + G + Sbjct: 16 MRQQIAT-ASNLSNTETPGF---KKELSTQAAFWLRGGNSSRAMASQGIYSADLQKAEVQ 71 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG +LD A+ GD+ A+++ G TR G +VT+ G LV+ G +P++ PI I Sbjct: 72 QTGRDLDLAMGGDSMIAVQAEDGSEAYTRRGDLQVTNSGVLVNGEG-HPLVGERG-PITI 129 Query: 134 PQKDEI 139 D+I Sbjct: 130 GAADKI 135 >gi|116328901|ref|YP_798621.1| flagellar hook protein FlgE [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330492|ref|YP_800210.1| flagellar hook protein FlgE [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121645|gb|ABJ79688.1| Endoflagellar hook protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124181|gb|ABJ75452.1| Endoflagellar hook protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 464 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 16/132 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GA--IKNDID 53 M S G++ + R+ + +N+SN +T GF+T +V F +++ GA K +I Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELRGASEPKENIG 60 Query: 54 ----QKI---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 Q++ S +A+ + +++ GS +TG D A+ G+ +F ++ TR G F Sbjct: 61 GVNPQQVGLGSLIAAIDKIMTQ--GSLQTTGKNTDVAMSGEGFFIVKDGDKQFYTRAGAF 118 Query: 107 KVTDDGSLVSAS 118 + +G V+ + Sbjct: 119 NLDKNGYYVNPA 130 >gi|24215548|ref|NP_713029.1| flagellar hook protein FlgE [Leptospira interrogans serovar Lai str. 56601] gi|45657072|ref|YP_001158.1| flagellar hook protein FlgE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196693|gb|AAN50047.1| flagellar hook protein FlgE [Leptospira interrogans serovar Lai str. 56601] gi|45600309|gb|AAS69795.1| FlgE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 464 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 16/132 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GA--IKNDID 53 M S G++ + R+ + +N+SN +T GF+T +V F +++ GA K +I Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELRGASEPKENIG 60 Query: 54 ----QKI---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 Q++ S +A+ + +++ GS +TG D A+ G+ +F ++ TR G F Sbjct: 61 GVNPQQVGLGSLIAAIDKIMTQ--GSLQTTGKNTDVAISGEGFFIVKDGDKQFYTRAGAF 118 Query: 107 KVTDDGSLVSAS 118 + +G V+ + Sbjct: 119 NLDKNGYYVNPA 130 >gi|256829395|ref|YP_003158123.1| hypothetical protein Dbac_1614 [Desulfomicrobium baculatum DSM 4028] gi|256578571|gb|ACU89707.1| protein of unknown function DUF1078 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 513 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 13/129 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQ 54 + +S IG +A ++ ++ ++DN++N TVGF++ + F+ ++ ++ N + Q Sbjct: 3 ISSSLYIGTTGIMAQQKNMAVISDNIANVSTVGFKSSHMIFNTLMSQQMGSASVSNQVGQ 62 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDD 111 + V+S +S +G+ T T D ++ G +F + SP G TR G F+ + Sbjct: 63 GVG-VSSILYDMS--LGALEPTNTATDISISGKGFF-IVSPNGSSDQHYTRAGNFRFDAE 118 Query: 112 GSLVSASGK 120 G L G Sbjct: 119 GYLRDPQGN 127 >gi|600722|gb|AAA92801.1| flagellar hook FlgE [Helicobacter mustelae] Length = 403 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 19/113 (16%) Query: 24 DNMSNTDTVGFRTIKVKFSEVVGAIK--------------NDIDQKISF-VASGKEYLSK 68 +N++N +T GF+ + F +++ K ND+ + V S + S+ Sbjct: 1 NNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVSVGLGVNVNSTTKVFSQ 60 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVSASG 119 GS +T + D A+EGD +F + RG TRDG F +G+LV+ G Sbjct: 61 --GSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDANGNLVTNGG 111 >gi|27380965|ref|NP_772494.1| hypothetical protein bll5854 [Bradyrhizobium japonicum USDA 110] gi|27354131|dbj|BAC51119.1| bll5854 [Bradyrhizobium japonicum USDA 110] Length = 754 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 15/132 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M TS GL AQ L ++ N++N+ T G++ I F +++ Q V Sbjct: 7 MNTSVG-GLQAQ---SYALQNISGNIANSSTTGYKGIGTSFVDLIPDASVPSKQVAGGVT 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVT 109 + + G+ S+ + A+ GD +F+++ ++ TR G F++ Sbjct: 63 ANAKATITTQGTISSSSVATNMAITGDGFFSIQKATSVVDNLPQFGGVTYYTRRGDFQLN 122 Query: 110 DDGSLVSASGKY 121 +G+LV+ +G Y Sbjct: 123 SNGNLVNGAGYY 134 >gi|308186393|ref|YP_003930524.1| Flagellar hook protein FlgE [Pantoea vagans C9-1] gi|308056903|gb|ADO09075.1| Flagellar hook protein FlgE [Pantoea vagans C9-1] Length = 418 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 + G+ +T LD AL G+ +F + +S G+ +R+G+ + + +LV+ G Sbjct: 58 -IQNFNDGATTTTSRGLDVALSGNGFFRMTDSSGGVFYSRNGQLTLDANRNLVNTQGLNV 116 Query: 120 -KYPV 123 YP Sbjct: 117 TGYPA 121 >gi|157781876|gb|ABV72264.1| FlgE [Azospirillum brasilense] Length = 297 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 16/135 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + T FN G+ A + L T+++N++N T GF+ + +FS+ V + + + V Sbjct: 3 ITTIFNNGVLGLTAQNRALGTISNNIANASTSGFKASETQFSDFVLSDRTGNKDPGNGVR 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE---------------SPRGIILTRDGR 105 + E L G+ T + A+ G+ +F ++ S + LTR G Sbjct: 63 A-FERLDHSGGTVTRTDITTNAAINGNGFFIVQDLAAQAGTTATTAQTSDDSVFLTRSGD 121 Query: 106 FKVTDDGSLVSASGK 120 F +G LV+ +GK Sbjct: 122 FSPDKEGRLVNGAGK 136 >gi|4378857|gb|AAD19725.1| flagellar basal-body rod protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 249 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + Q+++T A N+SNT+T GF K + S + + + G + Sbjct: 16 MRQQIAT-ASNLSNTETPGF---KKELSTQAAFWLRGGNSSRAMASQGIYSADLQKAEVQ 71 Query: 75 STGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 TG +LD A+ GD+ A+++ G TR G +VT+ G LV+ G +P++ PI I Sbjct: 72 QTGRDLDLAMGGDSMIAVQAEDGSEAYTRRGDLQVTNSGVLVNGEG-HPLVGERG-PITI 129 Query: 134 PQKDEI 139 D+I Sbjct: 130 GAADKI 135 >gi|75675292|ref|YP_317713.1| flagellar basal body rod protein, FlaE [Nitrobacter winogradskyi Nb-255] gi|74420162|gb|ABA04361.1| Flagellar basal body rod protein, FlaE [Nitrobacter winogradskyi Nb-255] Length = 613 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 18/146 (12%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GL AQ Q +S N++N T G++ I FS+++ Q V + Sbjct: 13 GLQAQSFALQNIS---GNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGGVTAYATATI 69 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-----------IILTRDGRFKVTDDGSLVS 116 G+ ++ A+ GD +F +++P G TR G F+V G LV+ Sbjct: 70 SSQGTVSASTVGTYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQVDAGGHLVN 129 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNV 142 ++G Y + VP+ + + NV Sbjct: 130 SAGYY----LMGVPVDPKTGNPLGNV 151 >gi|531462|gb|AAA67880.1| orfG [Bacillus subtilis subsp. subtilis str. 168] Length = 135 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 16/111 (14%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE---------- 64 L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA ++ Sbjct: 15 LQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVAKARKTPPGLRLGVG 74 Query: 65 -----YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 L + GS T +LD A + + G TRDG VT Sbjct: 75 AMMSSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDGALYVT 125 >gi|639926|gb|AAA61738.1| flagellar hook polypeptide [Borrelia burgdorferi] Length = 190 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 26/120 (21%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS----KEVG-- 71 R+ V +N++N +T+GF+ +V F ++ I Q IS + + K+VG Sbjct: 1 RMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGASRPTDARGGTNPKQVGLG 53 Query: 72 -------------SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +F ST D + G+ +F L+ + + TR G F V D LV+ + Sbjct: 54 MNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDVDSDRHLVNPA 113 >gi|312164118|gb|ADQ38281.1| flagellar hook protein [Azospirillum brasilense] Length = 291 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 16/135 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + T FN G+ A + L T+++N++N T GF+ + +FS+ V + + + V Sbjct: 3 ITTIFNNGVLGLTAQNRALGTISNNIANASTSGFKASETQFSDFVLSDRTGNKDPGNGVR 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE---------------SPRGIILTRDGR 105 + E L G+ T + A+ G+ +F ++ S + LTR G Sbjct: 63 A-FERLDHSGGTVTRTDITTNAAINGNGFFIVQDLAAQAGTTATTAQTSDDSVFLTRSGD 121 Query: 106 FKVTDDGSLVSASGK 120 F +G LV+ +GK Sbjct: 122 FSPDKEGRLVNGAGK 136 >gi|206970637|ref|ZP_03231589.1| putative flagellar basal-body rod protein [Bacillus cereus AH1134] gi|206734273|gb|EDZ51443.1| putative flagellar basal-body rod protein [Bacillus cereus AH1134] Length = 257 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L ++SG + V+ + I+IP+ G K + G + I + + Sbjct: 123 DRYLQTSSGAF-VMGENNERIRIPE-------GAKVAVQADGTLYDEATQNNIGRLQTKT 174 Query: 163 VDMSQG--FVRRENSGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 VD V+REN + NI P + +G+ VK LE+SN + EM ++ Sbjct: 175 VDAETNARLVQRENKSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 228 >gi|289670508|ref|ZP_06491583.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 90 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 26/93 (27%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK-------- 68 Q STV+ N++N DTVGF+ A+ N +F GK Y S+ Sbjct: 9 QAQSTVSHNLANVDTVGFKA----------ALAN----TEAFKIQGKGYPSRIDALHVDQ 54 Query: 69 ----EVGSFISTGTELDFALEGDAWFALESPRG 97 G TG LD +L+ D W A++SP G Sbjct: 55 GFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDG 87 >gi|57169039|ref|ZP_00368167.1| flagellar hook protein flgE Cj0043 [Campylobacter coli RM2228] gi|57019584|gb|EAL56274.1| flagellar hook protein flgE Cj0043 [Campylobacter coli RM2228] Length = 545 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 5/126 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M TSF G++ + A+N++N +T GF+ +F ++ + + Sbjct: 1 MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 G S +V GS +++ E D AL+G +F + G TR+G F+ G+LV Sbjct: 61 YGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGEAYYTRNGAFRRDAAGNLV 120 Query: 116 SASGKY 121 + G + Sbjct: 121 DSYGNF 126 >gi|167750722|ref|ZP_02422849.1| hypothetical protein EUBSIR_01700 [Eubacterium siraeum DSM 15702] gi|167656401|gb|EDS00531.1| hypothetical protein EUBSIR_01700 [Eubacterium siraeum DSM 15702] Length = 521 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 13/126 (10%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISFVAS 61 G++ +Q++ + +N++N +T GF+T F EV G+ +++ ++ Sbjct: 8 GVSGLKTHQQKMDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQV 67 Query: 62 GKEYLSKEVG------SFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 G +G F + + D AL GD +F + G I +R G F V + G+L Sbjct: 68 GYGTKLGAIGQVMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNL 127 Query: 115 VSASGK 120 V ++G Sbjct: 128 VDSNGN 133 >gi|333008281|gb|EGK27755.1| flagellar basal-body rod protein flgG [Shigella flexneri K-272] gi|333019771|gb|EGK39043.1| flagellar basal-body rod protein flgG [Shigella flexneri K-227] Length = 163 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 24/140 (17%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLVSASGKYPVLDMASVP 130 +G LV+A G + V ++P Sbjct: 125 NGQLVTAGG-FQVQPAITIP 143 >gi|305432527|ref|ZP_07401689.1| flagellar hook protein [Campylobacter coli JV20] gi|304444566|gb|EFM37217.1| flagellar hook protein [Campylobacter coli JV20] Length = 545 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 5/126 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M TSF G++ + A+N++N +T GF+ +F ++ + + Sbjct: 1 MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 G S +V GS +++ E D AL+G +F + G TR+G F+ G+LV Sbjct: 61 YGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGEAYYTRNGAFRRDAAGNLV 120 Query: 116 SASGKY 121 + G + Sbjct: 121 DSYGNF 126 >gi|111115108|ref|YP_709726.1| flagellar hook protein FlgE [Borrelia afzelii PKo] gi|216263795|ref|ZP_03435789.1| flagellar hook protein FlgE [Borrelia afzelii ACA-1] gi|110890382|gb|ABH01550.1| flagellar hook protein [Borrelia afzelii PKo] gi|215979839|gb|EEC20661.1| flagellar hook protein FlgE [Borrelia afzelii ACA-1] Length = 442 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 61 SGKEYLS----KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 + K+VG +F ST D + G+ +F L+ + T Sbjct: 54 RPTDVRGGTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGGNLFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRHLVN 128 >gi|219682254|ref|YP_002468638.1| flagellar hook protein FlgE [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621987|gb|ACL30143.1| flagellar hook protein FlgE [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 408 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKE 64 I ++ LA + +++N++N T+G+++ K F ++ N + ++S + Sbjct: 5 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 64 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G + TG +LD + D +F L +G + TRDG+F + D ++++ G Y Sbjct: 65 NFNN--GMLVETGRDLDLGIIKDGFFRLVDSQGHVYYTRDGQFFLDKDQNIINIQGMY 120 >gi|28952050|ref|NP_240159.2| flagellar hook protein FlgE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681699|ref|YP_002468085.1| flagellar hook protein FlgE [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471395|ref|ZP_05635394.1| flagellar hook protein FlgE [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624542|gb|ACL30697.1| flagellar hook protein FlgE [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086078|gb|ADP66160.1| flagellar hook protein FlgE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086649|gb|ADP66730.1| flagellar hook protein FlgE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087235|gb|ADP67315.1| flagellar hook protein FlgE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087754|gb|ADP67833.1| flagellar hook protein FlgE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 408 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKE 64 I ++ LA + +++N++N T+G+++ K F ++ N + ++S + Sbjct: 5 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 64 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G + TG +LD + D +F L +G + TRDG+F + D ++++ G Y Sbjct: 65 NFNN--GMLVETGRDLDLGIIKDGFFRLVDSQGHVYYTRDGQFFLDKDQNIINIQGMY 120 >gi|229132600|ref|ZP_04261448.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST196] gi|228650832|gb|EEL06819.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST196] Length = 257 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 33/232 (14%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + Q ++ ++N++N T GF+ ++ + GA N +D Sbjct: 6 IGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGATTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNVQMTNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L +ASG + V+ + I+IP+ ++ V G E++Q I + +VD Sbjct: 123 DRYLQTASGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IGRLQTKTVDAE 178 Query: 167 QG--FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 V+REN + + L DL T VK LE+SN + EM ++ Sbjct: 179 TNARLVQRENKSFT--LAEGNLADLPNGTGIVKNHMLENSNVDMTKEMADLM 228 >gi|188582486|ref|YP_001925931.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] gi|179345984|gb|ACB81396.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] Length = 263 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 48/246 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI---- 56 G+AAQ E + +++N++N T G++ +V F +++ G+ +D + + Sbjct: 10 GMAAQ---ELNVQVISNNIANLRTTGYKRQQVHFQDLLYQNLRRSGSSTSDQNTILPAGL 66 Query: 57 ---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 S V + + G T + D A+ G+ F + P G TRDG F + G Sbjct: 67 ALGSGVKTTSTARAMSQGPLAQTDKDYDVAIRGEGLFRVRLPDGRNAYTRDGSFDLDAQG 126 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG---- 168 LV+ G Y + +VP N IS G V AT+ + + G Sbjct: 127 QLVTRDG-YLLDPGVTVP----------NTATSVTISATGAVQATLPGQTAPQALGQFQL 175 Query: 169 --FVRR------------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 FV + E + P I P + G +++ +LE++N N++ E+ +I Sbjct: 176 ARFVNKVGLESIGDNLFVETAASGPAITGLPGSEGFG-NLQQNWLEEANVNAVTEISSLI 234 Query: 215 HLTQKF 220 + + Sbjct: 235 AAQRAY 240 >gi|86149558|ref|ZP_01067788.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839826|gb|EAQ57085.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni CF93-6] Length = 545 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M SF G++ + + A+N++N +T GF+ +F ++ + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 G S +V GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEI 139 + G + + M I D + Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRV 144 >gi|121612241|ref|YP_999769.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157414368|ref|YP_001481624.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81116] gi|167004743|ref|ZP_02270501.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 81-176] gi|87249055|gb|EAQ72017.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157385332|gb|ABV51647.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 81116] gi|307747010|gb|ADN90280.1| Flagellar hook protein [Campylobacter jejuni subsp. jejuni M1] gi|315931630|gb|EFV10595.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni 327] Length = 545 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M SF G++ + + A+N++N +T GF+ +F ++ + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 G S +V GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEI 139 + G + + M I D + Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRV 144 >gi|118477204|ref|YP_894355.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis str. Al Hakam] gi|225863630|ref|YP_002749008.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB102] gi|229183964|ref|ZP_04311179.1| Flagellar basal-body rod protein flgG [Bacillus cereus BGSC 6E1] gi|118416429|gb|ABK84848.1| flagellar basal-body rod protein [Bacillus thuringiensis str. Al Hakam] gi|225789416|gb|ACO29633.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB102] gi|228599489|gb|EEK57094.1| Flagellar basal-body rod protein flgG [Bacillus cereus BGSC 6E1] Length = 257 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 41/236 (17%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDAYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGASGTTSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L + SG + V+ + I+IP+ G K + G + IA + + Sbjct: 123 DRYLQTTSGAF-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKT 174 Query: 163 VDMSQG--FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 VD ++REN + + + DL T VK LE+SN + EM ++ Sbjct: 175 VDAEANARLMQRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|86151187|ref|ZP_01069402.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841534|gb|EAQ58781.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 545 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M SF G++ + + A+N++N +T GF+ +F ++ + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 G S +V GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEI 139 + G + + M I D + Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRV 144 >gi|148926857|ref|ZP_01810535.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8486] gi|145844434|gb|EDK21542.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8486] Length = 545 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M SF G++ + + A+N++N +T GF+ +F ++ + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 G S +V GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEI 139 + G + + M I D + Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRV 144 >gi|186477697|ref|YP_001859167.1| flagellar basal body FlaE domain-containing protein [Burkholderia phymatum STM815] gi|184194156|gb|ACC72121.1| flagellar basal body FlaE domain protein [Burkholderia phymatum STM815] Length = 501 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 22/147 (14%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKND--IDQKISFVA 60 GL+ L + +N++N +TVGF+ +F++ V A+ N I ++S V Sbjct: 6 GLSGLAGASSDLDVIGNNIANANTVGFKQGAAQFADMYANSVATAVNNQIGIGTRMSQV- 64 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG- 119 ++ S+ G+ + L A+ G +F + + + +R+G F++ +G + +A G Sbjct: 65 --EQNFSQ--GTISTDDIALHVAINGSGFFQMSNNGALTYSRNGVFQLDKNGYITNADGL 120 Query: 120 --------KYPVLDMA-SVPIQIPQKD 137 +++ A +VP+Q+P + Sbjct: 121 KLMGYAANANGIINTAGTVPLQVPTAN 147 >gi|11386807|sp|P57422|FLGE_BUCAI RecName: Full=Flagellar hook protein flgE gi|25403598|pir||E84969 flagellar hook protein flgE [imported] - Buchnera sp. (strain APS) gi|10039011|dbj|BAB13045.1| flagellar hook protein flgE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 405 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKE 64 I ++ LA + +++N++N T+G+++ K F ++ N + ++S + Sbjct: 2 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 61 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G + TG +LD + D +F L +G + TRDG+F + D ++++ G Y Sbjct: 62 NFNN--GMLVETGRDLDLGIIKDGFFRLVDSQGHVYYTRDGQFFLDKDQNIINIQGMY 117 >gi|57237057|ref|YP_178069.1| flagellar hook protein [Campylobacter jejuni RM1221] gi|88597731|ref|ZP_01100964.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 84-25] gi|205356434|ref|ZP_03223198.1| hypothetical protein Cj8421_0048 [Campylobacter jejuni subsp. jejuni CG8421] gi|218561735|ref|YP_002343514.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57165861|gb|AAW34640.1| flagellar hook protein [Campylobacter jejuni RM1221] gi|88190035|gb|EAQ94011.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359441|emb|CAL34223.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205345621|gb|EDZ32260.1| hypothetical protein Cj8421_0048 [Campylobacter jejuni subsp. jejuni CG8421] gi|315929148|gb|EFV08373.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni 305] Length = 545 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M SF G++ + + A+N++N +T GF+ +F ++ + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 G S +V GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEI 139 + G + + M I D + Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRV 144 >gi|86154050|ref|ZP_01072251.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842464|gb|EAQ59678.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 545 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M SF G++ + + A+N++N +T GF+ +F ++ + Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 G S +V GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEI 139 + G + + M I D + Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRV 144 >gi|228920482|ref|ZP_04083827.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839112|gb|EEM84408.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 249 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 35/223 (15%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T + DF L+ A +F LTRDG F + D L ++SG Sbjct: 65 VNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQTSSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQG--FVRREN 174 + V+ + I+IP+ ++ V G E++Q I + +VD V+REN Sbjct: 125 F-VIGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IGRLQTKTVDAETNARLVQREN 180 Query: 175 SGIS---PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + NI P + +G+ VK LE+SN + EM ++ Sbjct: 181 KSFTLAEGNIANLP--NGTGI-VKNHMLENSNVDMTKEMADLM 220 >gi|90422996|ref|YP_531366.1| hypothetical protein RPC_1485 [Rhodopseudomonas palustris BisB18] gi|90105010|gb|ABD87047.1| protein of unknown function DUF1078-like [Rhodopseudomonas palustris BisB18] Length = 599 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 14/115 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-GSFISTG 77 L ++ N++N+ T F+ I F +++ ND Q+++ + K + + GS S Sbjct: 21 LENISGNIANSQTTAFKRIDTSFLDLIPQTGND--QQLAGSVTAKSRSTNTIQGSVQSAS 78 Query: 78 TELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDDGSLVSASGKY 121 A+ GD +FA++ P TR G F + +G LV+ +G Y Sbjct: 79 VSTYMAINGDGFFAVQKPGSFSDNNPVFTGVNNYTRRGDFSLDKNGYLVNGAGYY 133 >gi|292487939|ref|YP_003530814.1| flagellar hook protein FlgE [Erwinia amylovora CFBP1430] gi|292899158|ref|YP_003538527.1| flagellar hook protein FlgE [Erwinia amylovora ATCC 49946] gi|291199006|emb|CBJ46117.1| flagellar hook protein FlgE [Erwinia amylovora ATCC 49946] gi|291553361|emb|CBA20406.1| Flagellar hook protein flgE [Erwinia amylovora CFBP1430] gi|312172060|emb|CBX80317.1| Flagellar hook protein flgE [Erwinia amylovora ATCC BAA-2158] Length = 402 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/131 (21%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N+SN+ T GF++ V F+++ K + K++ V +++ G+ Sbjct: 12 AASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVV--QDF---NDGTT 66 Query: 74 ISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ +F + ++ G+ +R+G+F + + ++V+ A+G P Sbjct: 67 TNTSRGLDVAISSAGFFRMADANGGVFYSRNGQFTLDQNRNIVNMQGLHLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P+ + Sbjct: 127 AVQTGANPVAL 137 >gi|303240279|ref|ZP_07326798.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592189|gb|EFL61918.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 439 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 18/136 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIK---------- 49 M S G++ A + ++ + +N++N +TV +++ +V F EV IK Sbjct: 1 MMRSMFSGVSGLRAHQTKMDVIGNNVANVNTVAYKSGRVTFQEVFSQTIKGAGAPDTATG 60 Query: 50 ----NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGIILTRD 103 N + + S + ++ GS T D A+EGD +F ++ S TR Sbjct: 61 RGGTNPMQVGLGIGVSSVDTITTR-GSLQRTDNPTDLAIEGDGFFIVKGGSADTYRFTRA 119 Query: 104 GRFKVTDDGSLVSASG 119 G F + G+LV+ SG Sbjct: 120 GNFGIDKTGNLVTGSG 135 >gi|310767290|gb|ADP12240.1| flagellar hook protein FlgE [Erwinia sp. Ejp617] Length = 402 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/131 (21%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N+SN+ T GF++ V F+++ K + K++ V +++ G+ Sbjct: 12 AASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVV--QDF---NDGTT 66 Query: 74 ISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ +F + ++ G+ +R+G+F + + ++V+ A+G P Sbjct: 67 TNTSRGLDVAISSAGFFRMADANGGVFYSRNGQFTLDQNRNIVNMQGLHLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P+ + Sbjct: 127 TVQTGANPVAL 137 >gi|255099438|ref|ZP_05328415.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-63q42] gi|255305296|ref|ZP_05349468.1| flagellar basal body rod protein FlgG [Clostridium difficile ATCC 43255] Length = 257 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 14/127 (11%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEV----VGAIKNDIDQK-----I 56 ++A + +Q+ + V +N++N DT G+++ ++ F E+ N QK I Sbjct: 9 VSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTKQKQIIGDI 68 Query: 57 SFVASGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 S S E ++ G +T ++D A++G +F + G TR+G F+ + G L Sbjct: 69 SPGISMDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNFRTDNQGDL 128 Query: 115 VSASGKY 121 +++ G Y Sbjct: 129 ITSEGYY 135 >gi|237752020|ref|ZP_04582500.1| flagellar hook protein flge [Helicobacter winghamensis ATCC BAA-430] gi|229376587|gb|EEO26678.1| flagellar hook protein flge [Helicobacter winghamensis ATCC BAA-430] Length = 764 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 22/143 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKND--IDQ 54 M SF G++ + + + ++N++N +T G+R K F+ + I ++ I+ Sbjct: 1 MVGSFYNGISGIKTHQFGIDSTSNNIANVNTTGYRGNLPEFKSLFATNLNFINSNSPINN 60 Query: 55 KISFVAS-GKEYLSKEVGSFISTGTELDFALEGDAWFA----------LESPRGI----- 98 ++ A+ G ++ G+++ + + A G WF ++SP Sbjct: 61 DYNYGATIGSNAINSNDGTYVKADGDFNVAYSGKGWFVVGLDKSGEFDIKSPNYTGTQQN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKY 121 TRDG F + +G LV++SG Y Sbjct: 121 FFTRDGSFSLDGEGYLVNSSGYY 143 >gi|311070150|ref|YP_003975073.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] gi|310870667|gb|ADP34142.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] Length = 274 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 110/260 (42%), Gaps = 35/260 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE---------- 64 L+Q++ T++ N+SN+ T G++ FSE+V + +D+K VA ++ Sbjct: 15 LQQQIDTISSNLSNSSTTGYKAKNTNFSELVRQQFDQVDEKNDNVAKARKTPPGLRLGVG 74 Query: 65 -----YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT----DDGSL 114 L + GS T +LD A + + G TRDG +T +D L Sbjct: 75 AAMNARLVSDQGSIEKTERDLDIAFTSPYQYLQVNVNGNRQYTRDGALYLTPAAGNDNQL 134 Query: 115 VSASGK-YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA------TMGLYSVDMSQ 167 +G YPVLD PI I + + E G ++ +G+ V+ Q Sbjct: 135 QLVTGDGYPVLDENGNPINIDDSMKQITISENGTLTASTGNAGDASQQFNLGVVQVNNPQ 194 Query: 168 GFVRRENSGISPN-IPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI--HLTQK 219 N+ S N LE+L+G + +++G LE SN + +M +I + + Sbjct: 195 ELKSEGNNLFSLNGNAAAALEELNGANRQSIGIQQGALEMSNVDISKQMTDLISSQRSYQ 254 Query: 220 FNSITTLIDENEKSMLEAIR 239 NS T + + ++ ++R Sbjct: 255 LNSRTITMGDQMLGLVNSVR 274 >gi|254973935|ref|ZP_05270407.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-66c26] gi|255091321|ref|ZP_05320799.1| flagellar basal body rod protein FlgG [Clostridium difficile CIP 107932] gi|255312979|ref|ZP_05354562.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-76w55] gi|255515738|ref|ZP_05383414.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-97b34] gi|255648832|ref|ZP_05395734.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-37x79] gi|260682049|ref|YP_003213334.1| flagellar basal body rod protein FlgG [Clostridium difficile CD196] gi|260685647|ref|YP_003216780.1| flagellar basal body rod protein FlgG [Clostridium difficile R20291] gi|306518946|ref|ZP_07405293.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-32g58] gi|260208212|emb|CBA60569.1| flagellar basal-body rod protein FlgG [Clostridium difficile CD196] gi|260211663|emb|CBE01931.1| flagellar basal-body rod protein FlgG [Clostridium difficile R20291] Length = 257 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 14/127 (11%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEV----VGAIKNDIDQK-----I 56 ++A + +Q+ + V +N++N DT G+++ ++ F E+ N QK I Sbjct: 9 VSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTKQKQIIGDI 68 Query: 57 SFVASGKEYLSK-EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 S S E ++ G +T ++D A++G +F + G TR+G F+ + G L Sbjct: 69 SPGISMDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNFRTDNQGDL 128 Query: 115 VSASGKY 121 +++ G Y Sbjct: 129 ITSEGYY 135 >gi|228945356|ref|ZP_04107711.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814328|gb|EEM60594.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 437 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + G + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFGVSKDNYVTTT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKNGTQEIDFSSRPSPIHIP 159 >gi|259908812|ref|YP_002649168.1| flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|224964434|emb|CAX55943.1| Flagellar biosynthesis, hook protein [Erwinia pyrifoliae Ep1/96] gi|283478794|emb|CAY74710.1| flgE [Erwinia pyrifoliae DSM 12163] Length = 402 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/131 (21%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 A L + +N+SN+ T GF++ V F+++ K + K++ V +++ G+ Sbjct: 12 AASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASVV--QDF---NDGTT 66 Query: 74 ISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVS----------ASGKYP 122 +T LD A+ +F + ++ G+ +R+G+F + + ++V+ A+G P Sbjct: 67 TNTSRGLDVAISSAGFFRMADANGGVFYSRNGQFTLDQNRNIVNMQGLHLTGYPATGTPP 126 Query: 123 VLDMASVPIQI 133 + + P+ + Sbjct: 127 TVQTGANPVAL 137 >gi|229144365|ref|ZP_04272771.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-ST24] gi|228639152|gb|EEK95576.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-ST24] Length = 437 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNSGNVEYTRKGSFSVSKDNYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 SG+Y + +D +S PI IP Sbjct: 131 SGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|228933037|ref|ZP_04095900.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826638|gb|EEM72409.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 437 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + G + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFSVSKDSYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|228952133|ref|ZP_04114228.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807665|gb|EEM54189.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 437 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSLTLTSDKMETAIEGNGLFLVGDRNSGNVEYTRKGSFGVSKDNYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 SG+Y + +D +S PI IP Sbjct: 131 SGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|27381984|ref|NP_773513.1| flagellar basal body rod protein FlgG [Bradyrhizobium japonicum USDA 110] gi|27355154|dbj|BAC52138.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ TG D A+ G WF + P + TR G F + LV+ G +LD A Sbjct: 84 GALTQTGNPYDLAINGRGWFQVLGPNNEVQYTRAGSFNTNANSQLVTTDGY--LLDPA-- 139 Query: 130 PIQIPQKDEIFNVGEKGEISQK 151 I IPQ V + G++ K Sbjct: 140 -ITIPQGTVEVTVNQTGQVFAK 160 >gi|219670133|ref|YP_002460568.1| hypothetical protein Dhaf_4123 [Desulfitobacterium hafniense DCB-2] gi|219540393|gb|ACL22132.1| protein of unknown function DUF1078 domain protein [Desulfitobacterium hafniense DCB-2] Length = 329 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 20/149 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------VASGKEY 65 A + L + +NMSN +T G++ +V F+E + A +++ + V +G Y Sbjct: 13 AQQTALDVLGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQPVGERIDVGAGVIY 72 Query: 66 LSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + + G T D A++G+ +F + + G TR G F++ G LV++ G Sbjct: 73 PTIDTDYRQGIIRETENPFDLAIDGEGFFPVRTANGESRYTRVGNFELDSQGKLVNSDGY 132 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 + ++IP V E G I+ Sbjct: 133 I-------LEVKIPADAMDLYVDETGNIT 154 >gi|218135322|ref|ZP_03464126.1| hypothetical protein BACPEC_03227 [Bacteroides pectinophilus ATCC 43243] gi|217990707|gb|EEC56718.1| hypothetical protein BACPEC_03227 [Bacteroides pectinophilus ATCC 43243] Length = 276 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 64/275 (23%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ AQ + + T+A+N++N +T G++T +F + + ++ K + + ++ Sbjct: 15 GMTAQ---QTNVDTIANNLANVNTTGYKTESAEFKTL---LYQNLQTKTTTANGENKPVN 68 Query: 68 KEV---------------GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-- 109 +V G F+ + FA+ GD +F + G TR+G F ++ Sbjct: 69 AQVGLGTRNSSITSHYTQGQFLDSDNTFSFAINGDGFFGVMGDDGNTYYTRNGNFFISPL 128 Query: 110 DDGS-LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------------QKGKV 154 DGS ++ S VL+ PI FN E +I+ + Sbjct: 129 QDGSMMLCTSDGNAVLNSEGAPI-------TFNNMEANKITVDADGQFMYPDDTGNPAAI 181 Query: 155 IATMGLYS------VDMSQG--FVRRENSGISPNIPPTPLEDLSGVT----VKRGFLEDS 202 GLY +D + G + SG + N E + VT +K+G+LE S Sbjct: 182 GIQFGLYQFTNPSGLDKTSGGLLAATDASGDALN------ESVDQVTKKSQLKQGYLEGS 235 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 N N EM +I + + + I+ +++ + +A Sbjct: 236 NVNVATEMVNLITAQRAYELNSKAINASDEMLQQA 270 >gi|268680906|ref|YP_003305337.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] gi|268618937|gb|ACZ13302.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] Length = 567 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKNDIDQKI 56 M +S G++ + + + +N+SN +T GF+ + FS ++ N + Sbjct: 1 MNSSLYNGVSGIKTSQFYIDVIGNNISNVNTNGFKGSTPEVSSLFSSILVGTYNSYSNGV 60 Query: 57 SFVA-SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 A S L G +T D AL + WF ++ G TR G F + +G+L Sbjct: 61 GMGAQSFNTALDMSQGILENTDNTFDLALGSEGWFGVQGADGNTYYTRAGSFSLDAEGNL 120 Query: 115 VSASGKY 121 V G Y Sbjct: 121 VDGDGNY 127 >gi|228945375|ref|ZP_04107730.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814347|gb|EEM60613.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 257 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 41/236 (17%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + QR++ ++N++N T GF+ ++ + GA+ N +D Sbjct: 6 IGSMGMMNYMQRINVHSNNVANAQTAGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ G A F + S LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYS 162 D L + SG + V+ + I+IP+ G K + G + IA + + Sbjct: 123 DRYLQTTSGAF-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKT 174 Query: 163 V--DMSQGFVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 V + + ++REN + + + DL T VK LE+SN + EM ++ Sbjct: 175 VGAEANNRLIQRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 228 >gi|269836573|ref|YP_003318801.1| hypothetical protein Sthe_0541 [Sphaerobacter thermophilus DSM 20745] gi|269785836|gb|ACZ37979.1| protein of unknown function DUF1078 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 413 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 28/153 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------------KNDIDQKISF 58 A + L + +N++N T GF+ +V+F +V+ +N + Sbjct: 15 AYQTWLDVIGNNIANLATPGFKASRVRFEDVMSHTLRGASVPDPAQGRGGRNPAQVGLGV 74 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +A+G + G+ +TG A++G+ +F + TRDG F + DG LV+ S Sbjct: 75 LAAGID-TDYAPGTPTATGKMSHMAIQGEGYFVVADGFRTYYTRDGSFDLGIDGRLVNPS 133 Query: 119 GKYPVLDMAS------------VPIQIPQKDEI 139 V+ + PI+IP +E+ Sbjct: 134 TGLYVMGWQADANGAIDTSQPLSPIRIPIGEEM 166 >gi|331005440|ref|ZP_08328819.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] gi|330420716|gb|EGG95003.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] Length = 258 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 15/159 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M +FNI + + ++ T+A+N+SN +T G++ KV F ++V G N + + Sbjct: 1 MLDAFNISATGLQSQQTQVETIANNLSNVNTDGYKKSKVIFQDIVSKQLGINTNGLINQA 60 Query: 57 S---FVASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 S + S ++K G +T LD ++G + + P G TR G V + Sbjct: 61 SNNTGIGSSANLINKIFTGGDPKATDRPLDIFIQGSGFLEVVMPDGRYGYTRVGNLNVDE 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 +G L ++ G ++S+ +QIP + + +G +S Sbjct: 121 NGVLTNSDG----FSLSSL-VQIPPDAQDIVIDSEGTVS 154 >gi|203284204|ref|YP_002221944.1| flagellar hook protein [Borrelia duttonii Ly] gi|201083647|gb|ACH93238.1| flagellar hook protein [Borrelia duttonii Ly] Length = 441 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIK------ 49 M S G++ + R+ V +N+SN +TVGF+ +V F +++ GA + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNISNVNTVGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 50 --NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 N + + + + + GSF ST D + G+ +F L TR G F Sbjct: 61 GVNPKQIGLGMTVAAVDTIHTQ-GSFQSTQKASDLGISGNGFFILRDGDNSFYTRAGAFD 119 Query: 108 VTDDGSLVS 116 V + LV+ Sbjct: 120 VDSNRHLVN 128 >gi|196045154|ref|ZP_03112387.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB108] gi|196024156|gb|EDX62830.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB108] Length = 249 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 41/226 (18%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T+GF+ ++ + GA+ N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTIGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T + DF L+ G A F + S LTRDG F + D L + SG Sbjct: 65 VNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSV--DMSQGFV 170 + V+ + I+IP+ G K + G + IA + +V + + + Sbjct: 125 F-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLI 176 Query: 171 RRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 +REN + + + DL T VK LE+SN + EM ++ Sbjct: 177 QRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 220 >gi|228914332|ref|ZP_04077947.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845326|gb|EEM90362.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 437 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + G + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFSVSKDSYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEVDFSSRPSPIHIP 159 >gi|170022971|ref|YP_001719476.1| flagellar basal body rod protein [Yersinia pseudotuberculosis YPIII] gi|169749505|gb|ACA67023.1| flagellar basal body rod protein [Yersinia pseudotuberculosis YPIII] Length = 102 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG- 62 SF+I A A ++L+T+++N++N+ T GF+ + +FS + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQ-----SQPLGVAVSGV 56 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG----IILTRDGR 105 + +SK+ G TG LD A+ G +F + G I + +GR Sbjct: 57 SQNISKD-GQKEKTGMGLDLAISGGGFFVVRESSGDKAYIYIRLNGR 102 >gi|15895409|ref|NP_348758.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum ATCC 824] gi|15025132|gb|AAK80098.1|AE007715_3 Flagellar basal body rod protein [Clostridium acetobutylicum ATCC 824] Length = 258 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++ + E + + +N++NT+TVGF++ + + + ++ + V + Sbjct: 9 ISGMVVQEAKQDVITNNLANTNTVGFKSDSLSSQSFEDVLIQNYSKRENGVPERTLLGTL 68 Query: 69 EVGSFI-------------STGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDG 112 +GS I +T + DFA++G +F + G TR+G F V DG Sbjct: 69 NLGSRINDTATDFTGGNIQATDIDTDFAIQGRGFFTVRKNNGSDQNYYTRNGHFHVNMDG 128 Query: 113 SLVSASGKY 121 ++ SG Y Sbjct: 129 YMLDDSGDY 137 >gi|187918157|ref|YP_001883720.1| flagellar hook protein FlgE [Borrelia hermsii DAH] gi|119861005|gb|AAX16800.1| flagellar hook protein FlgE [Borrelia hermsii DAH] Length = 442 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 61 ---SGKEYLS-KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 G+ ++ K+VG SF ST D + G+ +F L T Sbjct: 54 RPTDGRGGVNPKQVGLGMSVATIDTIHTQGSFQSTQKASDLGISGNGFFILRDGNNSFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V D LV+ Sbjct: 114 RAGAFDVDSDRRLVN 128 >gi|30019797|ref|NP_831428.1| flagellar hook protein FlgE [Bacillus cereus ATCC 14579] gi|229043508|ref|ZP_04191218.1| Flagellar hook protein FlgE [Bacillus cereus AH676] gi|229127079|ref|ZP_04256078.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4] gi|229149956|ref|ZP_04278184.1| Flagellar hook protein FlgE [Bacillus cereus m1550] gi|296502353|ref|YP_003664053.1| flagellar hook protein FlgE [Bacillus thuringiensis BMB171] gi|29895342|gb|AAP08629.1| Flagellar hook protein flgE [Bacillus cereus ATCC 14579] gi|228633637|gb|EEK90238.1| Flagellar hook protein FlgE [Bacillus cereus m1550] gi|228656432|gb|EEL12271.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4] gi|228725886|gb|EEL77133.1| Flagellar hook protein FlgE [Bacillus cereus AH676] gi|296323405|gb|ADH06333.1| flagellar hook protein FlgE [Bacillus thuringiensis BMB171] Length = 437 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNSGNVEYTRKGSFGVSKDNYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 SG+Y + +D +S PI IP Sbjct: 131 SGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|301053310|ref|YP_003791521.1| flagellar basal-body rod protein [Bacillus anthracis CI] gi|300375479|gb|ADK04383.1| flagellar basal-body rod protein [Bacillus cereus biovar anthracis str. CI] Length = 243 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 45/228 (19%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 2 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 58 Query: 66 LSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T + DF L+ G A F + S LTRDG F + D L + SG Sbjct: 59 VNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGA 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSV--DMSQGFV 170 + V+ + I+IP+ G K + G + IA + +V + + + Sbjct: 119 F-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLM 170 Query: 171 RRENSGIS---PNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 +REN + NI P +GV TVK LE+SN + EM ++ Sbjct: 171 QRENKSFTLAEGNIADLP----NGVGTVKNYMLENSNVDMTKEMADLM 214 >gi|228958033|ref|ZP_04119769.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801658|gb|EEM48539.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 437 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNSGNVEYTRKGSFGVSKDNYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 SG+Y + +D +S PI IP Sbjct: 131 SGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|254502675|ref|ZP_05114826.1| conserved domain protein [Labrenzia alexandrii DFL-11] gi|222438746|gb|EEE45425.1| conserved domain protein [Labrenzia alexandrii DFL-11] Length = 477 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 30/151 (19%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GL+AQ L ++ N++N+ TVGF+ + FS++V + ++S + Sbjct: 13 GLSAQ---ATALENISGNVANSQTVGFKRLDTTFSDLVSGGGSTQADQVSGTTYATSRAT 69 Query: 68 KEVGSFISTGTELD--FALEGDAWFALESPRGII-----------LTRDGRFKVTDDGSL 114 +G IS+ ++D A+ G+ +F + + TR G F+V +G Sbjct: 70 NTIGGDISS-NDVDTYMAINGEGYFVVTQAADFVDGSTTFADDTFYTRAGDFEVNKEGYF 128 Query: 115 VSASGKY------------PVLDMASVPIQI 133 V+ SG Y PV D SV IQI Sbjct: 129 VNQSGYYLKGFPLDPATGNPVGDNPSV-IQI 158 >gi|228984838|ref|ZP_04145009.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155324|ref|ZP_04283435.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 4342] gi|228628249|gb|EEK84965.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 4342] gi|228774890|gb|EEM23285.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 437 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + G + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFGVSKDSYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|146341767|ref|YP_001206815.1| flagellar hook protein FlgE [Bradyrhizobium sp. ORS278] gi|146194573|emb|CAL78598.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. ORS278] Length = 415 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA-SGKEYLS 67 ++A A L+ ++DN+SN DT G++T F ++V A + V+ SG+ ++ Sbjct: 11 ISALNAQSSSLAMISDNISNADTTGYKTTSGLFEQLVTASSSSKAYSSGGVSVSGRSNIT 70 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG----IILTRDGRFKVTDDGSLVSASGKY 121 ++ G +T D A++G +F S TR+G F TD+ + +G Y Sbjct: 71 QQ-GLLAATTNATDVAIQGSGFFVATSSTAAGGETFYTRNGAF-TTDNAGYIENNGYY 126 >gi|295399817|ref|ZP_06809798.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978220|gb|EFG53817.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] Length = 334 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 32/148 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ A + +L + +N++N +T GF+ + F ++ I Q IS + Sbjct: 1 MLRSMYSGINAMKNFQVKLDVIGNNIANVNTYGFKKGRTIFQDL-------ISQTISGAS 53 Query: 61 S---------------GKEYLS----KEVGSFISTGTELDFALEGDAWFALESP------ 95 + G + + GS TG LD A+ GD +F + Sbjct: 54 APSQGRGGTNPRQVGLGSQLAAIDTIHTTGSTQPTGRVLDLAISGDGFFQVAESADNTNF 113 Query: 96 RGIILTRDGRFKVTDDGSLVSASGKYPV 123 + TR G F + DG LV++ G Y V Sbjct: 114 TNVRYTRAGNFYLDKDGYLVTSDGYYVV 141 >gi|218674651|ref|ZP_03524320.1| flagellar hook protein FlgE [Rhizobium etli GR56] Length = 77 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++AQ RLSTV+DN++N +T G++ + FS +V G ++ + Q IS Sbjct: 13 GMSAQ---ANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSGNYNSGGVQTSVRQAIS 69 >gi|149183417|ref|ZP_01861850.1| FlhP [Bacillus sp. SG-1] gi|148848862|gb|EDL63079.1| FlhP [Bacillus sp. SG-1] Length = 278 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 34/207 (16%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFVASG-------- 62 L++++ + N++N+DT G++ + FSE+ V +K + D G Sbjct: 15 LQKQMDIIGHNLANSDTNGYKRREAMFSELLFQQVSNLKGEKDANTRLTPGGIRQGVGAK 74 Query: 63 --KEYLSKEVGSFISTGTELDFALEG-DAWFAL----ESPRGIILTRDGRFKVTDDGS-- 113 + ++ G+ +TG LDFAL + +F + E + TRDG F G+ Sbjct: 75 LAQSEINLAQGALKATGRSLDFALTSRNQFFKVLVQGEDGADVRYTRDGAFYANPIGNGE 134 Query: 114 --LVSASGKYPVLDMASVPIQIPQKD---EIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 LV+ G + VLD I + + + ++G+ G+++ G +G+ SV+ Q Sbjct: 135 MMLVNGQG-HAVLDENDNFITFTEAEMNSQDISLGDSGQLTIGGTPF-NLGIVSVEKPQ- 191 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVK 195 F+++ + N+ P +DL G V Sbjct: 192 FMQQ----VGQNLLGLP-DDLQGFGVN 213 >gi|237817504|ref|ZP_04596494.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] gi|237787259|gb|EEP61477.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] Length = 106 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 10/66 (15%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKNDIDQKIS 57 G++ A RLSTVADN++N TVG++ + +FS +V G++ D+ IS Sbjct: 10 GVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLTDVRYGIS 69 Query: 58 FVASGK 63 + G Sbjct: 70 DICIGH 75 >gi|229090715|ref|ZP_04221948.1| Flagellar hook protein FlgE [Bacillus cereus Rock3-42] gi|228692657|gb|EEL46383.1| Flagellar hook protein FlgE [Bacillus cereus Rock3-42] Length = 437 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + G + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFSVSKDSYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEVDFSSRPSPIHIP 159 >gi|118477189|ref|YP_894340.1| flagellar hook protein FlgE [Bacillus thuringiensis str. Al Hakam] gi|225863612|ref|YP_002748990.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB102] gi|229183945|ref|ZP_04311161.1| Flagellar hook protein FlgE [Bacillus cereus BGSC 6E1] gi|118416414|gb|ABK84833.1| flagellar hook protein [Bacillus thuringiensis str. Al Hakam] gi|225790448|gb|ACO30665.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB102] gi|228599597|gb|EEK57201.1| Flagellar hook protein FlgE [Bacillus cereus BGSC 6E1] Length = 437 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + G + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFGVSKDSYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|289523565|ref|ZP_06440419.1| flagellar hook protein FlgE [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503257|gb|EFD24421.1| flagellar hook protein FlgE [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 618 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 14/125 (11%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIK--------NDIDQKISFVASGKEY 65 L V +N++N +T+GF+ V F +++ GA N + + + E Sbjct: 2 LDVVGNNIANVNTMGFKKSTVTFQDLLYETSKGATAPRENIGGVNPMQIGLGTTVAAVET 61 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 + + G TG D A++GD ++ L + +R G F + +G++V + Y ++ Sbjct: 62 IHSQ-GPLQYTGNRTDVAIQGDGYYVLNDGAQNVYSRAGNFVLDGNGNIVQSGTGYTLMG 120 Query: 126 MASVP 130 P Sbjct: 121 YKMSP 125 >gi|160880840|ref|YP_001559808.1| hypothetical protein Cphy_2708 [Clostridium phytofermentans ISDg] gi|160429506|gb|ABX43069.1| protein of unknown function DUF1078 domain protein [Clostridium phytofermentans ISDg] Length = 479 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 15/134 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFV 59 M S G++ + ++ + +N+SN +TVGF+ FS+++ K+ + Sbjct: 1 MMRSLYSGVSGLRVHQTKMDVIGNNISNVNTVGFKASSATFSDILYQTTKSASGPNPNTG 60 Query: 60 ASGKEYLSKEVGSFIS--------------TGTELDFALEGDAWFALESPRGIILTRDGR 105 +G + +G+ ++ T D +EGD +F + + G T+ G Sbjct: 61 TAGTNAMQIGLGANLASITASITKTGGSQRTDNPFDLMIEGDGFFVVNNGVGNFFTKAGS 120 Query: 106 FKVTDDGSLVSASG 119 F V G+L + +G Sbjct: 121 FNVDAAGTLCTPTG 134 >gi|325509555|gb|ADZ21191.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum EA 2018] Length = 258 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++ + E + + +N++NT+TVGF++ + + + ++ + V + Sbjct: 9 ISGMVVQEAKQDVITNNLANTNTVGFKSDSLSSQSFEDVLIQNYSKRENGVPERTLLGTL 68 Query: 69 EVGSFI-------------STGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDG 112 +GS I +T + DFA++G +F + G TR+G F V DG Sbjct: 69 NLGSRINDTATDFTGGNIQATDIDTDFAIQGRGFFTVRKNNGSDQNYYTRNGHFHVNMDG 128 Query: 113 SLVSASGKY 121 ++ SG Y Sbjct: 129 YMLDDSGDY 137 >gi|284041521|ref|YP_003391861.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945742|gb|ADB48486.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 293 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 20/124 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-------------NDIDQKISFVASGKEY 65 L A++++N +TV +++ + F + + ++ N + + + Sbjct: 19 LDVTANDLANVNTVAYKSSRTTFQDSLAQLQRGAAGPGNGTGGSNALQIGLGVKLGSVDN 78 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALES------PRGIILTRDGRFKVTDDGSLVSASG 119 + E G+ +TG+ LD +EG WF + + P TR G F G L++++G Sbjct: 79 IMTE-GAPQTTGSPLDVYIEGSGWFRVANGTPPAVPTAFQWTRAGNFTTNSQGHLITSTG 137 Query: 120 KYPV 123 +Y V Sbjct: 138 QYVV 141 >gi|298530010|ref|ZP_07017412.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509384|gb|EFI33288.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] Length = 755 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S G++ +++ T+ +N+SN TVGF+ ++ F + + DI+ Sbjct: 3 LSSSMYTGVSGLKGHGEKMGTIGNNISNVSTVGFKGSRMHFEDF---MSQDINTGAGVGQ 59 Query: 61 SGKEYLSKEV------GSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDD 111 G+ V GS ST D A+ GD +F + S RG + TR G F+ ++ Sbjct: 60 VGRGVGVGAVMNDFSQGSLESTNEATDVAIGGDGFFQV-SARGTDENLYTRAGNFRFDEE 118 Query: 112 GSLV 115 G LV Sbjct: 119 GYLV 122 >gi|229172400|ref|ZP_04299959.1| Flagellar hook protein FlgE [Bacillus cereus MM3] gi|228610871|gb|EEK68134.1| Flagellar hook protein FlgE [Bacillus cereus MM3] Length = 441 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 36/191 (18%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N T G++ K F +++ G I + F Sbjct: 14 ATQNALSVTSNNIANAQTAGYKKQKAIFDDLLYNNTVGSRGDGSYAGTNPKSIGNGLKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 + ++ GS TG +++ A+EG+ F + G + TR G F V+ D + + Sbjct: 74 GTATDFSD---GSITLTGEKMETAIEGNGLFLVGDRNGGNVEYTRKGSFGVSADNFITAT 130 Query: 118 SGKYPV----------LDMASVP--IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 G+Y + +D +S P I++P I G ++ K + + D+ Sbjct: 131 GGQYVLGYGVKPGTQEVDFSSQPSAIKLPVGTAI-----GGSVTDKATLGGNLSRNQSDL 185 Query: 166 SQGFVRRENSG 176 S F ++ G Sbjct: 186 STDFTIYDDEG 196 >gi|269792937|ref|YP_003317841.1| hypothetical protein Taci_1328 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100572|gb|ACZ19559.1| protein of unknown function DUF1078 domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 636 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 27/187 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M S G++ + L V +N++N +T GF+ V F +++ GA+ D Q Sbjct: 1 MLRSLYSGVSGVKGHQTYLDVVGNNIANVNTTGFKRSNVLFQDLLYQNVRGAMAPDAGQG 60 Query: 56 ISFVASGKEYLSKEVGSFIS---------TGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + L VG+ + TG DF + GD +F +++ TR G Sbjct: 61 RGGINPMQVGLGSMVGAVETIHTQGTMQYTGNRNDFGISGDGYFVVKTGADTFYTRAGSA 120 Query: 107 KVTDDGSLV-SASGK-YPVLDMASVP------IQIPQKDEIFNVGEKGEISQKGKVIATM 158 + G+LV S G Y M+ P ++ P D VG+K E ++ T+ Sbjct: 121 TMDSGGNLVMSGMGYIYQGYKMSKDPTDPTKYVEGPLGDINIPVGQKLEANK-----TTL 175 Query: 159 GLYSVDM 165 G Y ++ Sbjct: 176 GGYRCNL 182 >gi|83647173|ref|YP_435608.1| flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] gi|83635216|gb|ABC31183.1| Flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] Length = 651 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 9/123 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----KNDIDQKISFV 59 FNI L A L +N++N T GF+ + +F ++ N + + Sbjct: 3 FNIALTGIRAASVDLEVTGNNIANASTTGFKRSRAEFGDLYANSFLSLGTNPVGDGVRVQ 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 +E+ + SF G LD A+ G+ +F L++ G +R G F + +G++V++S Sbjct: 63 KVRQEFAQGNL-SFTENG--LDLAINGEGFFILDTNNGDRRYSRAGAFGIDKEGNVVNSS 119 Query: 119 GKY 121 G + Sbjct: 120 GMH 122 >gi|85710164|ref|ZP_01041229.1| flagellar hook protein [Erythrobacter sp. NAP1] gi|85688874|gb|EAQ28878.1| flagellar hook protein [Erythrobacter sp. NAP1] Length = 279 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 9/135 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L+ E L +++N++N +T GF+ +FS++V + + + + + Sbjct: 2 SFFTSLSGMRNAETDLRVISNNIANAETAGFKKSSAQFSDLVASGGSTDPRTTPGIGATV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSASG 119 +S++ +G TG LD A+ G + + I TR+G ++ G+L A G Sbjct: 62 SRISQDFGLGQLEQTGRALDIAINGGGFITSANAISGDINFTRNGNLEIVASGTLQDAFG 121 Query: 120 K----YPVLDMASVP 130 +PV D A P Sbjct: 122 DRIQGFPV-DGAGTP 135 >gi|296274021|ref|YP_003656652.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] gi|296098195|gb|ADG94145.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] Length = 783 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 28/136 (20%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA 60 GL+AQ ++ L + N++N +T+G++ ++ F++ + GA D +KI + Sbjct: 11 GLSAQ---QKALDNESHNIANVNTIGYKASRISFADQMYQDKIGKGAKVQDA-EKI-YTP 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVTDDGSLV 115 SG + STG D AL+ +FA+ + TR G F++ D+G+L Sbjct: 66 SGTK----------STGVAYDMALKDHGFFAVSNKTSTGTSETYYTRAGNFRMGDNGTLQ 115 Query: 116 SASGKYPVLDMASVPI 131 A G V A PI Sbjct: 116 DAGGN-EVQGWAMSPI 130 >gi|89095666|ref|ZP_01168560.1| FlhP [Bacillus sp. NRRL B-14911] gi|89089412|gb|EAR68519.1| FlhP [Bacillus sp. NRRL B-14911] Length = 274 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 35/240 (14%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISFVASGKEY 65 L++++ + NM+N DT G++ + F++++ A +N + +G Sbjct: 15 LQKQMDITSHNMANVDTTGYKRREATFTDLLVQQFANQPNSADENRLTPNGLRQGTGAML 74 Query: 66 LSKEV----GSFISTGTELD--FALEGDAWFAL---ESPRGIILTRDGRFKVT---DDGS 113 ++ GS +T +LD F E + L E+ + TRDG F +T D S Sbjct: 75 AQSQIVMAQGSIKTTDRQLDTAFTKENQLYKVLVQTETGSEVQYTRDGAFYLTPVSDTES 134 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA----TMGLYSVDMSQGF 169 ++ S VLD PI I + F + E G ++ K ++G+ V+ Q F Sbjct: 135 MLVTSAGNAVLDENDNPIYINGQPGEFAITENGILTAKDSTGQEQEFSLGIVRVNKPQ-F 193 Query: 170 VRRENSGISPNIPPTP----LEDLSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++++ + L DL+G V++ LE SN N EM +I + + + Sbjct: 194 LQQQGGNLLALAAGADGIDVLTDLTGALRGEAGVQQRALEQSNVNMQKEMTDLITVQRAY 253 >gi|293115683|ref|ZP_05792615.2| flagellar hook protein FlgE [Butyrivibrio crossotus DSM 2876] gi|292808788|gb|EFF67993.1| flagellar hook protein FlgE [Butyrivibrio crossotus DSM 2876] Length = 440 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 38/142 (26%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----------------------- 44 G+A + ++ + +N++N +TVGF++ V FS+V Sbjct: 8 GVAGLKTHQTKMDVIGNNIANVNTVGFKSQSVTFSDVFYQTTQNASGANAETGMGGTNAK 67 Query: 45 ---VGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 +G+ + I K+S E G ST D + GD+ F + + T Sbjct: 68 QIGLGSTVSSITTKVS-----------ESGGSQSTSNPFDLMINGDSMFIVNNAGTNYFT 116 Query: 102 RDGRFKVTDDGSLVSASGKYPV 123 + G F V G+LV++ G Y V Sbjct: 117 KAGNFTVDSAGTLVTSQG-YAV 137 >gi|88858142|ref|ZP_01132784.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas tunicata D2] gi|88819759|gb|EAR29572.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas tunicata D2] Length = 255 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 23/190 (12%) Query: 70 VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 +G+ +TG LD A+ G W ++ G TR G ++T G L++A G+ + + Sbjct: 68 MGALSTTGRNLDVAVSGGGWLVVQDQNGEEAFTRGGNLQITSTGQLLTAKGEAVIGEGG- 126 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD-------MSQGFVRRENSGISPNI 181 PI +P E + G I + + L V+ +Q + + G+ Sbjct: 127 -PIILPVPLEKVQISTDGTIQVRPQGAPASFLEDVERLKVVVPQNQNLLEKGLDGLFRPK 185 Query: 182 PPTPLEDLSG-------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL------ID 228 + +D V V G LE SN N + EM MI ++F + +D Sbjct: 186 DKSTFKDQCDFCDTNLEVQVISGALEMSNVNPVDEMVGMIAHQRQFELQVKMMKTAEKMD 245 Query: 229 ENEKSMLEAI 238 E++ S+L I Sbjct: 246 ESQASLLRII 255 >gi|289609890|emb|CBI60366.1| unnamed protein product [Sordaria macrospora] Length = 90 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 9/92 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV----GSFI 74 +++++ N++N T GF+ + +F++V+ + N V SG G+ + Sbjct: 1 MASISHNLANVGTTGFKKSRAEFADVIAS--NLAVAPTQMVGSGTVVKGNRQQFGEGNLV 58 Query: 75 STGTELDFALEGDAWFALE---SPRGIILTRD 103 + + LD A+ GD +FAL+ + +G+ TR+ Sbjct: 59 QSSSSLDIAIAGDGFFALKPDPNKQGLAFTRN 90 >gi|254438850|ref|ZP_05052344.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198254296|gb|EDY78610.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 255 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 96/245 (39%), Gaps = 53/245 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASGKEYL--SKEVGSFIS 75 +S V++N++N T FR FS++ A + ++S V S E S E GS + Sbjct: 4 ISVVSNNVANAGTTAFRKSTANFSDLYTAASAESASRLSLGVGSVVETTRQSGEQGSLME 63 Query: 76 TGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSLVSASGKYPV----- 123 L+ AL G+ F + G + TRDG F + +G L +++ + + Sbjct: 64 RDGVLNLALIGNGMFVSAASAGDAQPSQLLTFTRDGEFALDKNGVLRTSTNDFVLGYDGL 123 Query: 124 ----LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS-VDMSQGFVRRENSGIS 178 L VP Q + + EI+ G + T G V + Q + G Sbjct: 124 GGTELGQLEVPFQSVNGSTLTAL----EINASGVMRGTYGSEEPVILGQIAI-----GAF 174 Query: 179 PNIPPTPLEDLS---------------GVTVKRGF-------LEDSNANSMYEMGQMIHL 216 PN+ T L L GV+ + GF LE SN N E+ MI Sbjct: 175 PNV--TALRQLGMGRFQATEEAGGLMLGVSGQDGFGKVQTGALESSNVNLTTELTSMIQA 232 Query: 217 TQKFN 221 Q+F+ Sbjct: 233 QQQFS 237 >gi|228926808|ref|ZP_04089876.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229090737|ref|ZP_04221970.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-42] gi|228692679|gb|EEL46405.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-42] gi|228832921|gb|EEM78490.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 249 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 41/226 (18%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T + DF L+ G A F + S LTRDG F + D L + SG Sbjct: 65 VNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSV--DMSQGFV 170 + V+ + I+IP+ G K + G + IA + +V + + V Sbjct: 125 F-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLV 176 Query: 171 RRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 +REN + + + DL T VK LE+SN + EM ++ Sbjct: 177 QRENKSFT--LAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 220 >gi|253827676|ref|ZP_04870561.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|253511082|gb|EES89741.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] Length = 765 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 28/128 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGA----------IKNDIDQKISFVASGKEYLSK 68 + ++N++N +T GFR +F + + ND + ++ G ++ Sbjct: 19 IDVTSNNIANVNTTGFRANSPEFKSLFSTHLNYVNSNSPVANDYNYGVTI---GSNAINT 75 Query: 69 EVGSFISTGTELDFALEGDAWFAL---------------ESPRGIILTRDGRFKVTDDGS 113 G++++ + + A G WF + + TRDG F + +G Sbjct: 76 NDGTYVNADGDFNVAYSGKGWFVVGLNKNGAFDITNPDYTGAQQNYFTRDGSFSLDGEGY 135 Query: 114 LVSASGKY 121 LV++SG Y Sbjct: 136 LVNSSGYY 143 >gi|213026536|ref|ZP_03340983.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 110 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 61/114 (53%), Gaps = 6/114 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGIT--Q 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 ++ G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 DFTD---GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVN 110 >gi|303326311|ref|ZP_07356754.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] gi|302864227|gb|EFL87158.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] Length = 503 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-----QK 55 M ++ IG L Q + +N++N T+G++ FS+++ + Q+ Sbjct: 1 MNSALYIGATGMKGLSQGMQVTTNNLANVSTIGYKQQNTLFSDMLSTSQGGTGDWWNAQE 60 Query: 56 ISFVASGKEYLSKEV---------GSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 S VA G+ +V G+ +T T D A+ G +F + + TR G F Sbjct: 61 NSRVALGQTGKGVQVDAVRTIFQQGALEATNTVTDMAINGKGFFQVSDGANLYYTRAGDF 120 Query: 107 KVTDDGSLVSASG 119 + ++G + +G Sbjct: 121 RPDNEGVWRTPTG 133 >gi|229189850|ref|ZP_04316861.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 10876] gi|228593658|gb|EEK51466.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 10876] Length = 437 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSLTLTSDKMETAIEGKGLFLVGDRNSGNVEYTRKGSFGVSKDNYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 SG+Y + +D +S PI IP Sbjct: 131 SGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|254440385|ref|ZP_05053879.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198255831|gb|EDY80145.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 432 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 11/91 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-QKISFV 59 + +SFN +A + RL+T++DN++N+ T G++ + F +V +D K + Sbjct: 3 ISSSFNASVAGLASNASRLATISDNIANSSTYGYKRVVADFHSMV------VDGGKGKYT 56 Query: 60 ASG----KEYLSKEVGSFISTGTELDFALEG 86 A G + L E G ++T D A+ G Sbjct: 57 AGGVGVTTQRLIDERGPLVATSNATDLAVRG 87 >gi|203287743|ref|YP_002222758.1| flagellar hook protein [Borrelia recurrentis A1] gi|201084963|gb|ACH94537.1| flagellar hook protein [Borrelia recurrentis A1] Length = 441 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIK------ 49 M S G++ + R+ V +N+SN +TVGF+ +V F +++ GA + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNISNVNTVGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 50 --NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 N + + + + + GSF ST D + G+ +F L TR G F Sbjct: 61 GVNPKQIGLGMTVATVDTIHTQ-GSFQSTQKASDLGISGNGFFILRDGDNSFYTRAGAFD 119 Query: 108 VTDDGSLVS 116 V + LV+ Sbjct: 120 VDSNRHLVN 128 >gi|149375034|ref|ZP_01892807.1| Flagellar hook protein FlgE [Marinobacter algicola DG893] gi|149360923|gb|EDM49374.1| Flagellar hook protein FlgE [Marinobacter algicola DG893] Length = 618 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 8/99 (8%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFVASGKEYLSKEVGSF 73 L +N++N TVGF++ + +F ++ + A N I + V K+ + SF Sbjct: 3 LDVTGNNIANASTVGFKSSQAQFGDLYASGFLSAGTNPIGDGVR-VQDVKQNFGQGNISF 61 Query: 74 ISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 G LD A+ GD +F L + + +R G+F + DG Sbjct: 62 TDNG--LDLAINGDGFFVLNNGGEVRYSRAGQFGIDKDG 98 >gi|256830199|ref|YP_003158927.1| hypothetical protein Dbac_2432 [Desulfomicrobium baculatum DSM 4028] gi|256579375|gb|ACU90511.1| protein of unknown function DUF1078 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 562 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 31/135 (22%) Query: 7 IGLAAQL--------ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 +GL+A L A + ++ + +N+SN T+GF+ ++ F + + Q+I+ Sbjct: 1 MGLSASLYSGTSGLKAHGEDMTVIGNNISNVSTIGFKGSRMYFEDA-------LSQQIT- 52 Query: 59 VASGKEYLSKEV-----------GSFISTGTELDFALEGDAWFALESPRGI---ILTRDG 104 ASG + + V GS ST D A+ G+ +F + SP G TR G Sbjct: 53 TASGSGQVGRGVSVGTVMGDFSQGSLESTTEATDLAIGGNGFF-MVSPAGQEVNYYTRAG 111 Query: 105 RFKVTDDGSLVSASG 119 F+ ++G LV G Sbjct: 112 NFRFDEEGYLVDPRG 126 >gi|145297455|ref|YP_001140296.1| lateral flagellar basal-body rod protein LfgF [Aeromonas salmonicida subsp. salmonicida A449] gi|142850227|gb|ABO88548.1| lateral flagellar basal-body rod protein LfgF [Aeromonas salmonicida subsp. salmonicida A449] Length = 236 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 63/251 (25%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK------------EV 70 A+N++N +T GFR D ++ ++ +G Y S+ + Sbjct: 15 ANNLANVNTAGFRA--------------DFERVSAYALTGDGYPSRVMAREEMAGTDFKA 60 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ + TG +LD A+ G+ + +++ G TR G +V +G L S PVL Sbjct: 61 GALMQTGRKLDVAVRGEGFITVQTADGKEAYTRAGNLEVDAEGLLTLNS--RPVLGDGGE 118 Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 + +D F G+ G +S + G +D+ G + P P+E + Sbjct: 119 MVLPAYRDLSF--GKDGSLS----ITPPGGGARLDV----------GRLKLVNPDPVELV 162 Query: 190 SG------------------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G V + GFLE +N N++ E+ + LT+ F L+ + Sbjct: 163 KGPDGLFRLRQGGDAETSEQVVLASGFLEGANVNAVDELISSMSLTRNFELQVKLMKTAD 222 Query: 232 KSMLEAIRNIA 242 + R I+ Sbjct: 223 DQARQGARLIS 233 >gi|114566393|ref|YP_753547.1| flagellar hook protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337328|gb|ABI68176.1| flagellar hook protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 475 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 14/137 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M S G++ + R+ + +N++N +T G++ +V F + + GA + D Sbjct: 1 MMRSMYSGVSGLRNHQTRMDVIGNNIANINTAGYKKSRVVFQDTLYQTMRGATRPDSSGS 60 Query: 56 ISFVASGKEYLSKEVGSF--ISTGTE-------LDFALEGDAWFALESPRGIILTRDGRF 106 L V S I TG LD ++GD +F + + TR G F Sbjct: 61 RGGTNPMGIGLGMSVSSIDQIHTGAPTTATNKLLDMGIDGDGYFMIRHGQQKYFTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPV 123 ++ G+LV + Y V Sbjct: 121 ELDTKGNLVHTANGYYV 137 >gi|218663526|ref|ZP_03519456.1| flagellar hook protein FlgE [Rhizobium etli IE4771] Length = 384 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 12/75 (16%) Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDG 104 G ++ + Q IS + G T + D A+ GD +F +E G +LTR G Sbjct: 12 GGVQTSVRQAIS-----------QQGDISYTTSAYDLAISGDGFFIVEGADGTPVLTRAG 60 Query: 105 RFKVTDDGSLVSASG 119 F V DG+LV+++G Sbjct: 61 DFSVDSDGNLVNSAG 75 >gi|163735543|ref|ZP_02142975.1| flagellar hook protein FlgE, putative [Roseobacter litoralis Och 149] gi|161391163|gb|EDQ15500.1| flagellar hook protein FlgE, putative [Roseobacter litoralis Och 149] Length = 416 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 18/128 (14%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 +++++DN++N+ T G++ ++ F +V V + + L E G+ +ST Sbjct: 1 MASISDNIANSSTFGYKRVQTDFESMV-LSSGGGSYAAGGVRANTQRLIDERGTLVSTSN 59 Query: 79 ELDFALEGDAWFAL-----------ESPRGIILTRDGRFKVTDDGSLVSASG----KYPV 123 D A+ G + ++P + LT G F+ +G L S SG +P Sbjct: 60 STDLAVRGGGMLPVAQSAQVQTAGADAP--MFLTTTGSFRTDAEGYLTSQSGLVLMGWPA 117 Query: 124 LDMASVPI 131 S+P+ Sbjct: 118 AADGSIPV 125 >gi|23015641|ref|ZP_00055411.1| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 804 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GLA+Q + ++DN++N +T G++ KV F +V + V S Sbjct: 13 GLASQ---SSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTSYSPGGVQSKPRAAI 69 Query: 68 KEVGSFISTGTELDFALEGDAWFALE-------SPRGII-LTRDGRFKVTDDGSLVSASG 119 G +T D AL G F + S G+ TR G FKV +G L + SG Sbjct: 70 DSQGLLQATTESTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDKEGYLQNVSG 129 Query: 120 KY 121 Y Sbjct: 130 FY 131 >gi|332799182|ref|YP_004460681.1| flagellar hook-basal body protein [Tepidanaerobacter sp. Re1] gi|332696917|gb|AEE91374.1| flagellar hook-basal body protein [Tepidanaerobacter sp. Re1] Length = 411 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 26/126 (20%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS------GKEYLSKEVG 71 ++ + +N++N +TVGF+ +V F + + Q + AS G + +G Sbjct: 17 KMDVIGNNIANVNTVGFKKSRVTFQDT-------LSQTMRGAASPQGNRGGTNPMQVGLG 69 Query: 72 SFIS-------------TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 I+ TG D ++EGD +F + + TR G F ++G+L++ + Sbjct: 70 MTIASIDTIHSPSSAEYTGNMTDLSIEGDGYFIVGDGLDMFYTRAGNFGFDENGNLINTA 129 Query: 119 GKYPVL 124 V+ Sbjct: 130 NGLKVM 135 >gi|284989548|ref|YP_003408102.1| flagellar hook-basal body protein [Geodermatophilus obscurus DSM 43160] gi|284062793|gb|ADB73731.1| flagellar hook-basal body protein [Geodermatophilus obscurus DSM 43160] Length = 408 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 22/136 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 M S N ++ A + +L +N++N +TVG++ + F + + + + Sbjct: 1 MLRSMNSAISGLRAHQTKLDVTGNNIANVNTVGYKASQTVFEDTLSQVVRNGSAPTAQAG 60 Query: 52 --------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRD 103 + K++ + + + E GS +TG DF + GD +F ++ + TR Sbjct: 61 GTNPAQVGLGVKVAGITT-----NFEQGSAQNTGRSTDFMISGDGFFITQAGNEQLYTRA 115 Query: 104 GRFKVTDDGSLVSASG 119 G F G+LV+ G Sbjct: 116 GSFSYDGAGNLVTPDG 131 >gi|226315011|ref|YP_002774907.1| flagellar basal-body rod protein [Brevibacillus brevis NBRC 100599] gi|226097961|dbj|BAH46403.1| flagellar basal-body rod protein [Brevibacillus brevis NBRC 100599] Length = 329 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI-FNVGEKGEISQKGKVI 155 I TR+G + V DG LV+A G Y VLD ++ I+I + NVG+ +IS++G+++ Sbjct: 141 IRYTRNGNWSVNSDGYLVTAEGYY-VLDSSNQAIRINHDPTLGTNVGQNLKISERGELM 198 >gi|126734127|ref|ZP_01749874.1| flagellar hook protein FlgE, putative [Roseobacter sp. CCS2] gi|126716993|gb|EBA13857.1| flagellar hook protein FlgE, putative [Roseobacter sp. CCS2] Length = 444 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 18/132 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N +A A RL+T++DN+SN+ T G++ F +V I++ + ++ A Sbjct: 3 ISSSLNASVAGLAANATRLATISDNISNSSTYGYKRAVTDFQSMV--IES---GQGTYSA 57 Query: 61 SG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---------ILTRDGRFK 107 G L E G+ +ST D A+ G + S + LT G F+ Sbjct: 58 GGVRTTTSRLIDERGALVSTSNPTDLAVRGRGMLPVTSETSVTVDNGDNPLFLTTTGSFR 117 Query: 108 VTDDGSLVSASG 119 G L S G Sbjct: 118 PDAQGYLRSPGG 129 >gi|163939582|ref|YP_001644466.1| flagellar basal body rod protein FlgG [Bacillus weihenstephanensis KBAB4] gi|163861779|gb|ABY42838.1| flagellar basal body rod protein [Bacillus weihenstephanensis KBAB4] Length = 257 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 33/232 (14%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + Q ++ ++N++N T GF+ ++ + G+ N +D Sbjct: 6 IGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSATNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNVQMTNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L +ASG + V+ + I+IP+ ++ V G E++Q IA + +VD+ Sbjct: 123 DRYLQTASGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDVE 178 Query: 167 QG--FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 V+REN + + + DL T V+ LE+SN + EM ++ Sbjct: 179 TNARLVQRENKSFT--LAEGNVADLPNGTGAVRNHMLENSNVDMTKEMADLM 228 >gi|83309603|ref|YP_419867.1| flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] gi|82944444|dbj|BAE49308.1| Flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] Length = 843 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GLA+Q + ++DN++N +T G++ KV F +V + V S Sbjct: 13 GLASQ---SSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTTYSPGGVQSKPRAAI 69 Query: 68 KEVGSFISTGTELDFALEGDAWFALE-------SPRGII-LTRDGRFKVTDDGSLVSASG 119 G +T D AL G F + S G+ TR G FKV +G L + SG Sbjct: 70 DSQGLLQATTNSTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDKEGYLQNVSG 129 Query: 120 KY 121 Y Sbjct: 130 FY 131 >gi|119953082|ref|YP_945291.1| flagellar hook protein FlgE [Borrelia turicatae 91E135] gi|119861853|gb|AAX17621.1| flagellar hook protein FlgE [Borrelia turicatae 91E135] Length = 442 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 26/135 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N++N +T+GF+ +V F ++ I Q IS + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGAS 53 Query: 61 ---SGKEYLS-KEVG---------------SFISTGTELDFALEGDAWFALESPRGIILT 101 G+ ++ K+VG SF ST D + G+ +F L T Sbjct: 54 RPTDGRGGVNPKQVGLGMSVATIDTIHTQGSFQSTQKASDLGISGNGFFILRDGNNSFYT 113 Query: 102 RDGRFKVTDDGSLVS 116 R G F V + LV+ Sbjct: 114 RAGAFDVDSNRCLVN 128 >gi|144900453|emb|CAM77317.1| Flagellar hook protein FlgE [Magnetospirillum gryphiswaldense MSR-1] Length = 693 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GLA+Q + ++DN+SN +TVG++ +V F +V + V S Sbjct: 13 GLASQ---SSAMGAISDNISNVNTVGYKGARVNFQTLVTKQTSITAYSPGGVQSKPRQGV 69 Query: 68 KEVGSFISTGTELDFALEGDAWFAL------ESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G +T + D + G +F + E+ TR G FKV +G L + SG Y Sbjct: 70 DVQGLLQATNSSTDIGMSGQGFFIVNEAARPENGDMFAYTRAGSFKVDSEGYLQNVSGWY 129 >gi|261344142|ref|ZP_05971786.1| flagellar hook protein FlgE [Providencia rustigianii DSM 4541] gi|282567734|gb|EFB73269.1| flagellar hook protein FlgE [Providencia rustigianii DSM 4541] Length = 422 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L ++ +N++N+ T GF+ F+++ + + ++ A + Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAG--SGVGLGVNVAAVTQ 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + + G T D A+ G+ +F +E G + +RDG+F+ G+LV+ G Sbjct: 60 NF---KDGPITRTDRATDVAISGNGFFRVEDQNGDVFYSRDGQFQRDKSGNLVNNQGMVV 116 Query: 120 -KYPV 123 YP Sbjct: 117 TGYPA 121 >gi|118474252|ref|YP_891218.1| flagellar hook protein [Campylobacter fetus subsp. fetus 82-40] gi|118413478|gb|ABK81898.1| flagellar hook protein [Campylobacter fetus subsp. fetus 82-40] Length = 546 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVASGKEYLSKEV----GSFIS 75 +++++SN +TVG+++ +F ++ N S + G ++ + GS + Sbjct: 22 ISNDISNINTVGYKSSTAEFKSILYQSLNQTSTSPVTSQIGLGSTSMATSLNFKPGSLQN 81 Query: 76 TGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 T D A+ GD +F L G TR+G F +G +V+ +G Y + MA++ Sbjct: 82 TDKVFDLAIVGDGFFGLSGINGEQYFTRNGDFSKDVNGDIVNRNGLYLLGTMANL 136 >gi|296103611|ref|YP_003613757.1| Flagellar basal body FlaE domain protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058070|gb|ADF62808.1| Flagellar basal body FlaE domain protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 399 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 18/157 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F+ GL+ A + L V +N++N+ TVGF+ V F+++ A + +++ V+ Sbjct: 3 FSQGLSGLSAAAKALDVVGNNIANSQTVGFKAGSVSFADIF-AGSTGMGVQVAGVSQ--- 58 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG---- 119 + G+ ++ + LD + G +F + G + R+G+F+ +G +V+ + Sbjct: 59 --NFGDGALMNGASALDMGISGRGFFRMVDEAGSVFYGRNGQFEQDQNGFIVNKTNGLFL 116 Query: 120 -KYPVLD-----MASV-PIQIPQKDEIFNVGEKGEIS 149 Y D A V PI+IP D KG ++ Sbjct: 117 TGYQATDGVINPGAQVGPIRIPTDDMPPAASTKGSVA 153 >gi|301053291|ref|YP_003791502.1| flagellar hook protein [Bacillus anthracis CI] gi|300375460|gb|ADK04364.1| flagellar hook protein [Bacillus cereus biovar anthracis str. CI] Length = 437 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFGVSKDNYVTTT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|213026919|ref|ZP_03341366.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 149 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 71/130 (54%), Gaps = 14/130 (10%) Query: 101 TRDGRFKVTDDGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVI 155 TRDG F+V +G LV+A G P + + + + I +D + +V ++G+ + Q G++ Sbjct: 4 TRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLN 63 Query: 156 AT-----MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 T GL S+ + ++ ++SG +PN TP + +G+ + +G++E SN N E+ Sbjct: 64 LTTFMNDTGLESIGENL-YIETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEEL 119 Query: 211 GQMIHLTQKF 220 MI + + + Sbjct: 120 VNMIQVQRAY 129 >gi|149202207|ref|ZP_01879180.1| flagellar proximal rod protein FlgF [Roseovarius sp. TM1035] gi|149144305|gb|EDM32336.1| flagellar proximal rod protein FlgF [Roseovarius sp. TM1035] Length = 253 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 31/217 (14%) Query: 23 ADNMSNTDTVGFRTI-----KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 A N++N G+R V+F +++ + Q V +G S+E G T Sbjct: 23 AQNLANQTVPGYRRDLPNEGGVRFLDMMEGLTTRAFQ----VETGPAGFSQETGRLTRTD 78 Query: 78 TELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP-- 134 ELD A+ +F + G L+R G + DG+L + +G +L P+Q+P Sbjct: 79 EELDVAIADRGFFYVMPESGDPALSRRGDLRRDTDGTLRNGAGDA-MLGADMAPLQVPAY 137 Query: 135 QKDEIFNVGE---------KGEISQKGKVIATMGLYSVDMSQGF--VRRENSGISPNIPP 183 + I ++GE +G+ G + + V +++G R G+ P PP Sbjct: 138 RNIRITDIGEIYIQPLDDPEGDPVLAGVLATVIPPEDVALTKGADGQIRTVEGVLP--PP 195 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V +G LE SN N + E+ + + + F Sbjct: 196 N-----QQAEVLQGTLESSNVNPVEELLSTMQMQRNF 227 >gi|148554189|ref|YP_001261771.1| flagellar basal body FlaE domain-containing protein [Sphingomonas wittichii RW1] gi|148499379|gb|ABQ67633.1| flagellar basal body FlaE domain protein [Sphingomonas wittichii RW1] Length = 435 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L+ A + L+ +++N++N T GF+ +F ++V + + S +A Sbjct: 2 SFYTALSGLKASQTDLAVISNNIANVGTTGFKRSGTEFGDLVSSSP----MQSSGIAGQG 57 Query: 64 EYLSKEVGSFISTGTE-----LDFALEGDAWF---ALESPRGIILTRDGRFKVTDDGSLV 115 L F G E LD A+ G +F A S + TR+G F V + LV Sbjct: 58 TRLRGIAQQFTQGGLESSERSLDLAISGQGFFVTRASNSNGQVSYTRNGAFSVDANRFLV 117 Query: 116 SASGKY 121 +SG Y Sbjct: 118 DSSGAY 123 >gi|284925346|gb|ADC27698.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 544 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 5/141 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF G++ + + A+N++N +T GF+ +F ++ + G Sbjct: 3 SFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYGS 62 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 S +V GS +++ E D AL+G +F + G TR+G F+ +G LV + Sbjct: 63 GAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDSY 122 Query: 119 GKYPVLDMASVPIQIPQKDEI 139 G + + M I D + Sbjct: 123 GNFVLGTMNPAFTGINYSDRV 143 >gi|315123658|ref|YP_004065662.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017380|gb|ADT65473.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 544 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 5/141 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF G++ + + A+N++N +T GF+ +F ++ + G Sbjct: 3 SFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYGS 62 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 S +V GS +++ E D AL+G +F + G TR+G F+ +G LV + Sbjct: 63 GAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDSY 122 Query: 119 GKYPVLDMASVPIQIPQKDEI 139 G + + M I D + Sbjct: 123 GNFVLGTMNPAFTGINYSDRV 143 >gi|196044997|ref|ZP_03112230.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB108] gi|300117326|ref|ZP_07055116.1| flagellar hook protein FlgE [Bacillus cereus SJ1] gi|196023999|gb|EDX62673.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB108] gi|298725161|gb|EFI65813.1| flagellar hook protein FlgE [Bacillus cereus SJ1] Length = 437 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFGVSKDNYVTTT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|30261751|ref|NP_844128.1| flagellar hook protein FlgE [Bacillus anthracis str. Ames] gi|47526975|ref|YP_018324.1| flagellar hook protein FlgE [Bacillus anthracis str. 'Ames Ancestor'] gi|49184583|ref|YP_027835.1| flagellar hook protein FlgE [Bacillus anthracis str. Sterne] gi|65319023|ref|ZP_00391982.1| COG1749: Flagellar hook protein FlgE [Bacillus anthracis str. A2012] gi|165869249|ref|ZP_02213908.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0488] gi|167633465|ref|ZP_02391790.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0442] gi|167639152|ref|ZP_02397425.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0193] gi|170686150|ref|ZP_02877372.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0465] gi|170706520|ref|ZP_02896980.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0389] gi|177650602|ref|ZP_02933569.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0174] gi|190566422|ref|ZP_03019340.1| putative flagellar hook protein FlgE [Bacillus anthracis Tsiankovskii-I] gi|227815486|ref|YP_002815495.1| putative flagellar hook protein FlgE [Bacillus anthracis str. CDC 684] gi|229600977|ref|YP_002866149.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0248] gi|254683244|ref|ZP_05147105.1| flagellar hook protein FlgE [Bacillus anthracis str. CNEVA-9066] gi|254723830|ref|ZP_05185616.1| flagellar hook protein FlgE [Bacillus anthracis str. A1055] gi|254734597|ref|ZP_05192309.1| flagellar hook protein FlgE [Bacillus anthracis str. Western North America USA6153] gi|254741006|ref|ZP_05198694.1| flagellar hook protein FlgE [Bacillus anthracis str. Kruger B] gi|254755249|ref|ZP_05207283.1| flagellar hook protein FlgE [Bacillus anthracis str. Vollum] gi|254759785|ref|ZP_05211809.1| flagellar hook protein FlgE [Bacillus anthracis str. Australia 94] gi|30255979|gb|AAP25614.1| putative flagellar hook protein FlgE [Bacillus anthracis str. Ames] gi|47502123|gb|AAT30799.1| putative flagellar hook protein FlgE [Bacillus anthracis str. 'Ames Ancestor'] gi|49178510|gb|AAT53886.1| flagellar hook protein FlgE, putative [Bacillus anthracis str. Sterne] gi|164714689|gb|EDR20207.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0488] gi|167512942|gb|EDR88315.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0193] gi|167531503|gb|EDR94181.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0442] gi|170128618|gb|EDS97485.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0389] gi|170669847|gb|EDT20588.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0465] gi|172083746|gb|EDT68806.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0174] gi|190562557|gb|EDV16524.1| putative flagellar hook protein FlgE [Bacillus anthracis Tsiankovskii-I] gi|227006608|gb|ACP16351.1| putative flagellar hook protein FlgE [Bacillus anthracis str. CDC 684] gi|229265385|gb|ACQ47022.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0248] Length = 437 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFGVSKDNYVTTT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|1184296|gb|AAA87351.1| flagellar hook protein [Borrelia burgdorferi] Length = 442 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 26/117 (22%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---------------VASGK 63 + V +N++N +T+GF+ +V F ++ I Q IS V G Sbjct: 19 MDVVGNNIANVNTIGFKKGRVNFQDM-------ISQSISGASRPTDARGGTNPKQVGLGM 71 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S + G+F ST D + G+ +F L+ + + TR G F V D LV+ Sbjct: 72 NVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFYVDSDRHLVN 128 >gi|315057484|gb|ADT71813.1| Flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni S3] gi|315926889|gb|EFV06255.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315926904|gb|EFV06270.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 544 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 5/141 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF G++ + + A+N++N +T GF+ +F ++ + G Sbjct: 3 SFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYGS 62 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 S +V GS +++ E D AL+G +F + G TR+G F+ +G LV + Sbjct: 63 GAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVDSY 122 Query: 119 GKYPVLDMASVPIQIPQKDEI 139 G + + M I D + Sbjct: 123 GNFVLGTMNPAFTGINYSDRV 143 >gi|242238969|ref|YP_002987150.1| flagellar hook protein FlgE [Dickeya dadantii Ech703] gi|242131026|gb|ACS85328.1| flagellar basal body FlaE domain protein [Dickeya dadantii Ech703] Length = 399 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 12/112 (10%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---VASGKEYLSKEV 70 A L + +N++N++T GF++ V F+++ D + VAS + + Sbjct: 12 AASSNLDVIGNNIANSETTGFKSASVSFADIYA------DSAVGLGVKVASVTQNFTD-- 63 Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 G+ ST D A+ +F + G + TR+G F + D +LV+ +G Y Sbjct: 64 GTVESTDVGTDVAISKTGFFRVTDDSGSVYYTRNGEFTLDSDRNLVTKTGYY 115 >gi|196033292|ref|ZP_03100704.1| putative flagellar basal-body rod protein [Bacillus cereus W] gi|195993726|gb|EDX57682.1| putative flagellar basal-body rod protein [Bacillus cereus W] Length = 249 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 51/231 (22%) Query: 17 QRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQKISFVASGKEY 65 QR++ ++N++N T GF+ ++ + GA+ N +D + A+ + Sbjct: 8 QRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT---H 64 Query: 66 LSKEVGSFISTGTELDFALE----GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++ G+ T + DF L+ G A F + S LTRDG F + D L + SG Sbjct: 65 VNLVQGNIQMTNSATDFFLDDGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGA 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSV--DMSQGFV 170 + V+ + I+IP+ G K + G + IA + +V + + + Sbjct: 125 F-VMGENNERIRIPE-------GAKVAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLM 176 Query: 171 RRENS------GISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMI 214 +REN G S ++P +GV TVK LE+SN + EM ++ Sbjct: 177 QRENKSFTLAEGNSADLP-------NGVGTVKNYMLENSNVDMTKEMADLM 220 >gi|330943208|gb|EGH45615.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str. 1704B] Length = 565 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 7/93 (7%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISFVASGKEYLSKEVGSF 73 + +N++N T+GF++ + +FS + +GA ++ + + + + + E + Sbjct: 1 MEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRLASVQQNFNQGE--TV 58 Query: 74 ISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 IS+G LD ++G+ +F + + TR G F Sbjct: 59 ISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAF 91 >gi|89895709|ref|YP_519196.1| hypothetical protein DSY2963 [Desulfitobacterium hafniense Y51] gi|89335157|dbj|BAE84752.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 312 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 20/144 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--------VASGKEYLSKEV 70 + + +NMSN +T G++ +V F+E + A +++ + V +G Y + + Sbjct: 1 MDILGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQLVGERIDVGAGVIYPTIDT 60 Query: 71 ----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 G T D A++G+ +F + + G TR G F++ G LV++ G Sbjct: 61 DYRQGIIRETENPFDLAIDGEGFFPVRTANGESRYTRVGNFELDSQGKLVNSDGYI---- 116 Query: 126 MASVPIQIPQKDEIFNVGEKGEIS 149 + ++IP V E G I+ Sbjct: 117 ---LEVKIPADAMDLYVDETGNIT 137 >gi|218902868|ref|YP_002450702.1| putative flagellar hook protein FlgE [Bacillus cereus AH820] gi|218535884|gb|ACK88282.1| putative flagellar hook protein FlgE [Bacillus cereus AH820] Length = 437 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFGVSKDNYVTTT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|159045919|ref|YP_001534713.1| flagellar hook protein FlgE [Dinoroseobacter shibae DFL 12] gi|157913679|gb|ABV95112.1| flagellar hook protein FlgE [Dinoroseobacter shibae DFL 12] Length = 434 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 21/147 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ A RL+T++DN++N+ T G++ + F +V I + ++ A Sbjct: 3 ISSSLNAGVSGLNANATRLATISDNIANSSTYGYKRAEADFQSLV--ING--NSSGTYSA 58 Query: 61 SGKEYLSKEV----GSFISTGTELDFALEGDAWF------ALESPRG---IILTRDGRFK 107 G + V G ++T D A+ G AL+ G + L G F Sbjct: 59 GGVRVTTTRVIDEQGPLVTTSNPTDLAVGGSGMLPVTTLSALDENTGGYPLSLMTTGSFS 118 Query: 108 VTDDGSLVSASG----KYPVLDMASVP 130 DG L + +G +P +VP Sbjct: 119 PNADGVLTTETGMVLMGWPAAPDGTVP 145 >gi|49480337|ref|YP_035873.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331893|gb|AAT62539.1| flagellar hook protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 437 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFSVSKDSYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEVDFSSRPSPIHIP 159 >gi|196039080|ref|ZP_03106387.1| putative flagellar hook protein FlgE [Bacillus cereus NVH0597-99] gi|196030225|gb|EDX68825.1| putative flagellar hook protein FlgE [Bacillus cereus NVH0597-99] Length = 437 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFSVSKDSYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEVDFSSRPSPIHIP 159 >gi|52143704|ref|YP_083124.1| flagellar hook protein FlgE [Bacillus cereus E33L] gi|228926789|ref|ZP_04089857.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121305|ref|ZP_04250536.1| Flagellar hook protein FlgE [Bacillus cereus 95/8201] gi|51977173|gb|AAU18723.1| flagellar hook protein [Bacillus cereus E33L] gi|228662150|gb|EEL17759.1| Flagellar hook protein FlgE [Bacillus cereus 95/8201] gi|228832902|gb|EEM78471.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 437 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNGVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFGVSKDNYVTTT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|89068728|ref|ZP_01156114.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] gi|89045691|gb|EAR51753.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] Length = 432 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 10/120 (8%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G++ A ++ +++N++N +T GFR FS++V + +A + + Sbjct: 10 GVSGLQANAASVANISENIANANTDGFRR---SFSQMVTTTTTNPSSMSGVIARDRIDMG 66 Query: 68 KEVGSFISTGTELDFALEGDAWFAL-ESP-----RGIILTRDGRFKVTDDGSLVSASGKY 121 GS T + D ALEG +F + + P +LTR G F ++G+L +A+G Y Sbjct: 67 TP-GSMRPTDSATDLALEGGGFFVVSQRPDEPLASNYMLTRAGSFTPDENGNLKNAAGFY 125 >gi|315654586|ref|ZP_07907492.1| flagellar hook protein FlgE [Mobiluncus curtisii ATCC 51333] gi|315491050|gb|EFU80669.1| flagellar hook protein FlgE [Mobiluncus curtisii ATCC 51333] Length = 487 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 14/135 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------K 49 M S G++ + L ++N++N +T GF++ +F + + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVRSGAAPRLNER 60 Query: 50 NDIDQKISFVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 ++ + + +++ G+ TG LD + GD ++ L G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGTSVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKY 121 V G LV+A G + Sbjct: 121 GVDAQGQLVAADGSF 135 >gi|260768781|ref|ZP_05877715.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] gi|260616811|gb|EEX41996.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] Length = 229 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 19/208 (9%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N+++ +TVGF+++ ++ S+ + + ++ + + G+ + TG +LD Sbjct: 8 ANNLAHANTVGFKSL-MEHSDAMAVAGSGFQSSVT-TRTNSASTNFTPGAEVRTGRDLDV 65 Query: 83 ALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 + G +F++ G + +R G F+++ DG L+ + D PI++P+ I Sbjct: 66 QIPGRGFFSVAGQAGEPEELYSRAGNFRLSSDGLLLLGDRQVLGEDG---PIEVPEFQAI 122 Query: 140 FNVGEKGEIS---QKGKVIATMGLYS-VDMSQGFVRRENSGISPNIPPTPLEDLS---GV 192 N+ G IS G +GL V+ + SG+ P E L+ V Sbjct: 123 -NIASDGAISITPPGGGAEMQIGLLKLVNPEYAEMTLHTSGL---FVPKQGETLAFDPEV 178 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V+ G+LE SN +S+ E+ M+ LT+++ Sbjct: 179 AVRSGYLEGSNVSSLDELVSMMALTRQY 206 >gi|118588735|ref|ZP_01546143.1| hypothetical protein SIAM614_18554 [Stappia aggregata IAM 12614] gi|118438721|gb|EAV45354.1| hypothetical protein SIAM614_18554 [Stappia aggregata IAM 12614] Length = 463 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 15/126 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 GLAAQ + L ++ N++N+ T G++ + FS++V + Q++S + Sbjct: 13 GLAAQ---AKALENISGNVANSQTTGYKRLDTTFSDLVSGGGSKQAQQVSGTTFATSRAT 69 Query: 68 KEV-GSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDDGSLV 115 V G S + A+ G +F + ++ TR G F+ +G L+ Sbjct: 70 NTVQGDITSVDVDTYMAINGPGYFVVTKASDVVDGSTTFADETYYTRAGDFERDKEGYLI 129 Query: 116 SASGKY 121 ++SG Y Sbjct: 130 NSSGYY 135 >gi|87307400|ref|ZP_01089545.1| flagellar hook protein FlgE [Blastopirellula marina DSM 3645] gi|87290140|gb|EAQ82029.1| flagellar hook protein FlgE [Blastopirellula marina DSM 3645] Length = 929 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 23/144 (15%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKISFVASGKEYLS 67 A E ++ + +N++N+ TVGF+ F+ +G+ ++ D + G + Sbjct: 3 AAETQIDVLGNNLANSQTVGFKASDALFANQFLQTRGLGSKPSETDGGTNPRQVGLGVMV 62 Query: 68 KEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 E+ + GT D A++GD +F ++ G + TR+G FK + LV+ G+ Sbjct: 63 AEITPNFTQGTIEVSSNPSDLAIQGDGFFIVQGNNGERLYTRNGIFKTNSNNELVTIGGE 122 Query: 121 ----------YPVLDMASVPIQIP 134 + + + VP+ IP Sbjct: 123 RVLGFGIDENFNIQETQLVPLTIP 146 >gi|119719400|ref|YP_919895.1| 50S ribosomal protein L14P [Thermofilum pendens Hrk 5] gi|218546930|sp|A1RXG2|RL14_THEPD RecName: Full=50S ribosomal protein L14P gi|119524520|gb|ABL77892.1| LSU ribosomal protein L14P [Thermofilum pendens Hrk 5] Length = 141 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 8/132 (6%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT--DTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 S+ +GL + +E L VADN T +G K + + GA DI I + Sbjct: 11 VSYRLGLTPGVFMES-LVKVADNSGATLAKVIGVPHYKAVWRRIPGAAVGDIV--IVSIR 67 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD-DGSLVS-AS 118 +GK L K+V I + +W A E +I+T +G K T+ G L A+ Sbjct: 68 AGKPELRKQVMRAIVIRQRRPYRRPDGSWIAFEDNAVVIITPEGEPKGTEIRGPLAKEAA 127 Query: 119 GKYPVLD-MASV 129 ++P L MAS+ Sbjct: 128 ERWPKLSAMASI 139 >gi|149195335|ref|ZP_01872422.1| flagellar hook protein E [Caminibacter mediatlanticus TB-2] gi|149134527|gb|EDM23016.1| flagellar hook protein E [Caminibacter mediatlanticus TB-2] Length = 869 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 20/125 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------------KNDIDQKI 56 A Q+A++ A+N++N +TVGF+ + F ++ KN + + Sbjct: 14 AHQIAMDVE----ANNIANVNTVGFKYSRTNFQNLLSQTIKSATAPQGDLGGKNSLQVGL 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 S E + K+ GS +T D A+ GD +F + S G TR G F G+ Sbjct: 70 GATVSSVETMFKQ-GSIQNTDKNTDMAINGDGFFVVSSDGGKTYRYTRAGDFTFDAQGNF 128 Query: 115 VSASG 119 V +G Sbjct: 129 VDPNG 133 >gi|304438415|ref|ZP_07398355.1| flagellar hook protein FlgE [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368498|gb|EFM22183.1| flagellar hook protein FlgE [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 678 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 39/151 (25%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-------------- 61 + R+ V +N++N +T GF+ +V F+++ I Q +S +S Sbjct: 16 QTRMDVVGNNIANVNTTGFKASRVTFADM-------ISQNLSGASSPTGTIGGVNPKQIG 68 Query: 62 -GKEYLSKEV----GSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSL- 114 G S ++ GS TG D A+ GD F + + TR+G F +G+L Sbjct: 69 LGMSVASTDLLYTNGSVQQTGKNTDVAISRGDGLFVVSKGQQKFYTRNGAFSFDAEGNLT 128 Query: 115 VSASGKY--------PVLDMA---SVPIQIP 134 + ++G Y VL++A + IQIP Sbjct: 129 IPSTGLYVQGYMANNGVLNVAGDNTTKIQIP 159 >gi|229011065|ref|ZP_04168259.1| Flagellar basal-body rod protein flgG [Bacillus mycoides DSM 2048] gi|228750237|gb|EEM00069.1| Flagellar basal-body rod protein flgG [Bacillus mycoides DSM 2048] Length = 257 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 33/232 (14%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRT---------IKVKFSEVVGAIKN--DIDQK 55 IG + Q ++ ++N++N T GF+ ++ + G+ N +D Sbjct: 6 IGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSATNIGSVDYA 65 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTD 110 + A+ +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 66 VVPAAT---HVNLVQGNVQMTNSATDFFLDDGAAGTSSFFVTSKNDERFLTRDGSFTLNS 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMS 166 D L +ASG + V+ + I+IP+ ++ V G E++Q IA + +VD+ Sbjct: 123 DRYLQTASGAF-VMGENNERIRIPEGAKVA-VQADGTLYDEVTQNN--IARLQTKTVDVE 178 Query: 167 QG--FVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 V+REN + + + DL T V+ LE+SN + EM ++ Sbjct: 179 TNARLVQRENKSFT--LAEGNVADLPNGTGAVRNHMLENSNVDMTKEMADLM 228 >gi|315180484|gb|ADT87398.1| hypothetical flagellar basal-body rod protein [Vibrio furnissii NCTC 11218] Length = 244 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 19/208 (9%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N+++ +TVGF+++ ++ S+ + + ++ + + G+ + TG +LD Sbjct: 23 ANNLAHANTVGFKSL-MEHSDAMAVAGSGFQSSVT-TRTNSASTNFTPGAEVRTGRDLDV 80 Query: 83 ALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 + G +F++ G + +R G F+++ DG L+ + D PI++P+ I Sbjct: 81 QIPGRGFFSVAGQAGEPEELYSRAGNFRLSSDGLLLLGDRQVLGEDG---PIEVPEFQAI 137 Query: 140 FNVGEKGEIS---QKGKVIATMGLYS-VDMSQGFVRRENSGISPNIPPTPLEDLS---GV 192 N+ G IS G +GL V+ + SG+ P E L+ V Sbjct: 138 -NIASDGAISITPPGGGAEMQIGLLKLVNPEYADMTLHTSGL---FVPKQGETLAFDPEV 193 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V+ G+LE SN +S+ E+ M+ LT+++ Sbjct: 194 AVRSGYLEGSNVSSLDELVSMMALTRQY 221 >gi|83859391|ref|ZP_00952912.1| flagellar hook protein [Oceanicaulis alexandrii HTCC2633] gi|83852838|gb|EAP90691.1| flagellar hook protein [Oceanicaulis alexandrii HTCC2633] Length = 465 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 12/133 (9%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G + +A L+ ++DN++N +TVG++ + F+ + S S L Sbjct: 10 GASGLIANSSALAAISDNIANVNTVGYKRVDTIFTPNYKIGGGGETRYASSGVSSNSRLD 69 Query: 68 KEVGSFISTG-TELDFALEGDAWFALE-------SPRGIILTRDGRFKVTDDGSLVSASG 119 ++ G + D A++GD +F + S ++ TR G F+ G L + +G Sbjct: 70 VNSSGLLTPGVSATDMAIDGDGFFVVRPSPTAGGSSDAVLFTRSGGFQTDSSGYLRNDAG 129 Query: 120 KYPVLDMASVPIQ 132 Y + + P+Q Sbjct: 130 MY----LYAWPVQ 138 >gi|296534160|ref|ZP_06896654.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] gi|296265515|gb|EFH11646.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] Length = 262 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 43/249 (17%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKI 56 S NI +A + + +++N++N T ++ + +F +++ G+ +D + Sbjct: 3 SLNIAGTGMMAQQTNVEVISNNIANMSTTAYKRRRAEFQDLLYENLRRTGSQSSD---QG 59 Query: 57 SFVASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 + + SG + Y G T D A+ G+ +F ++ P G TR G Sbjct: 60 TVLPSGAQLGLGVRTAAIYRIGAQGDLSQTQNSFDLAIRGNGYFPVQMPTGETAYTRAGS 119 Query: 106 FKVTDDGSLVSASG--------------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 F ++D G +V+A G + V ++I + + NVG+ Q Sbjct: 120 FGLSDAGMIVTADGFQVGAGIVIPAGARDVTINATGEVLVKIDGQAALQNVGQL----QL 175 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 G GL ++ + + G++ P V +G+LE SN N + E+ Sbjct: 176 GTFPNEGGLEAIGDNMFLETPASGGVTLGNPGAAGYG----QVLQGYLETSNVNVVQEIT 231 Query: 212 QMIHLTQKF 220 +I + + Sbjct: 232 ALITAQRAY 240 >gi|149195336|ref|ZP_01872423.1| flagellar hook protein [Caminibacter mediatlanticus TB-2] gi|149134528|gb|EDM23017.1| flagellar hook protein [Caminibacter mediatlanticus TB-2] Length = 634 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQ 54 M TSF G++ ++ + L DN++N +T GF+ +F+ + + +DI Sbjct: 1 MTTSFYNGVSGLISFQNGLDIWGDNIANINTPGFKESIPEFATIFSQTLSNASPTSDIGL 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 ++ K+ +G+ + + D A+ + F S G TR+G F +G Sbjct: 61 GSLLHSTAKDM---SIGNIVDSDNPFDIAIADEKGFLGVSYNGETFYTRNGNFTRDANGF 117 Query: 114 LVSASGKYPVLDMASVPIQ 132 LV+ SG Y ++ A+ I+ Sbjct: 118 LVNDSGAYLLVANANNLIK 136 >gi|57506151|ref|ZP_00372072.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57015546|gb|EAL52339.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 853 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 24/138 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ A + + +N+SN +T GF+ + F + KI+ V Sbjct: 1 MMRSLWSGVSGMQAHQIAMDVEGNNISNVNTAGFKYSRADFGTMFSQTV-----KIATVP 55 Query: 61 S----GKEYLSKEVGSFISTGTEL-------------DFALEGDAWFALESPRGII--LT 101 + G+ L +G+ I++ T + D A+ GD +F + G+ LT Sbjct: 56 TENLGGQNPLQIGLGTSINSTTRIHSQGSVQTTNKNTDVAINGDGFFMVSDDGGLTRYLT 115 Query: 102 RDGRFKVTDDGSLVSASG 119 RDG FK+ G+ V+ +G Sbjct: 116 RDGDFKLDAAGNFVNNAG 133 >gi|283782100|ref|YP_003372855.1| flagellar basal body FlaE domain-containing protein [Pirellula staleyi DSM 6068] gi|283440553|gb|ADB18995.1| flagellar basal body FlaE domain protein [Pirellula staleyi DSM 6068] Length = 815 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 28/188 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------SEVVGAIKNDIDQ 54 + ++ L A E ++ V +N++N+ TVGF+ F ++ +G+ Sbjct: 3 LASALTTALTGMTAAETQIDVVGNNLANSQTVGFKASDSVFATQFLQTQSLGSGPTSGSG 62 Query: 55 KISFVASGKEYLSKEVGSFISTGT------ELDFALEGDAWFALESPRG-IILTRDGRFK 107 + +G E+ + GT D A++G+ +F ++ +G + TR+G+FK Sbjct: 63 GTNPRQTGLGTRVAEITPDFTQGTIEVSSNPSDLAIQGEGFFIVQDSQGEQVYTRNGQFK 122 Query: 108 VTDDGSLVSASGK----------YPVLDMASVPIQIPQKDEIF-----NVGEKGEISQKG 152 D LV+ +G+ + + VP++IP NV +G +S G Sbjct: 123 TNSDNELVTTTGQRVLGFGVDQDFEIQTTELVPLEIPLGSAAVAQATQNVYLQGVLSPSG 182 Query: 153 KVIATMGL 160 V T + Sbjct: 183 DVADTAAV 190 >gi|254470088|ref|ZP_05083492.1| flagellar hook protein [Pseudovibrio sp. JE062] gi|211960399|gb|EEA95595.1| flagellar hook protein [Pseudovibrio sp. JE062] Length = 561 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 27/151 (17%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--FVAS 61 S GL AQ + L ++ N++N+ T G++ + FS++V + + +++S +A+ Sbjct: 9 SATTGLDAQ---SKALENISGNVANSSTTGYKRLDTSFSDLVSSTGSRQAEQVSGTVIAT 65 Query: 62 GK--EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-------ILTRDGRFKVTDDG 112 + YLS G S A+ G +F + + G+ TR G F++ + Sbjct: 66 SRATNYLS---GDITSADRNTYMAINGPGYFLVTNRDGLGQETPESFYTRAGDFELDTER 122 Query: 113 SLVSASGK----YPV------LDMASVPIQI 133 +LV+++G YP+ + +VPIQ+ Sbjct: 123 NLVNSAGYFLQGYPINPATGAVSDRAVPIQV 153 >gi|196033295|ref|ZP_03100707.1| putative flagellar hook protein FlgE [Bacillus cereus W] gi|195993729|gb|EDX57685.1| putative flagellar hook protein FlgE [Bacillus cereus W] Length = 437 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 31/149 (20%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GAIKNDIDQKISFV 59 A + LS ++N++N TVG++ K F +++ G I + F Sbjct: 14 AAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAGTNPKSIGNVVKFS 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 + ++ GS T +++ A+EG+ F + + + TR G F V+ D + + Sbjct: 74 GTSTDFSD---GSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFSVSKDSYVTNT 130 Query: 118 SGKYPV----------LDMAS--VPIQIP 134 G+Y + +D +S PI IP Sbjct: 131 GGQYVLGYGVKTGTQEIDFSSRPSPIHIP 159 >gi|148254600|ref|YP_001239185.1| flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] gi|146406773|gb|ABQ35279.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] Length = 412 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++A A L+ ++DN+SN DT G++T F ++V A N V+ Sbjct: 11 ISALNAQSSSLAMISDNISNADTTGYKTTSGLFEQLVTASSNSKAYSSGGVSVSSRTNIT 70 Query: 69 EVGSFISTGTELDFALEGDAWF-ALESPRG---IILTRDGRFKVTDDGSLVSASGKY 121 + G +T D A++G +F A +S TR+G F TD+ + +G Y Sbjct: 71 QQGLLATTTNATDVAIQGSGFFVATDSTSAGGETFYTRNGAF-TTDNAGYLENNGYY 126 >gi|317121026|ref|YP_004101029.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] gi|315591006|gb|ADU50302.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] Length = 289 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 12/102 (11%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY----------L 66 +++ A+N++N +T GF+ + F+++V A + A G + Sbjct: 18 RQVDVTANNLANVNTPGFKASRADFADLVYAALAVPASPATAAAGGVQAGHGVRLAATPR 77 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 S G STG+ D A++G +F + P ++LTR G F Sbjct: 78 SWRQGPLQSTGSPWDLAIDGAGFFQVVEPGTGEVLLTRGGAF 119 >gi|85715029|ref|ZP_01046014.1| Flagellar basal body rod protein, FlaE [Nitrobacter sp. Nb-311A] gi|85698226|gb|EAQ36098.1| Flagellar basal body rod protein, FlaE [Nitrobacter sp. Nb-311A] Length = 640 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 11/114 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 L ++ N++N+ T G++ I F +++ Q V + G+ ++ Sbjct: 48 LQNISGNIANSQTTGYKGITTAFVDLIPDSTTPNRQVAGGVTAYATPTISSQGTVSASTV 107 Query: 79 ELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDDGSLVSASGKY 121 A+ GD +F +++P G + TR G F+V G LV+++G Y Sbjct: 108 GTYMAINGDGFFNVQTPTGRVDNQPQFSGVTYYTRRGDFQVDAHGHLVNSAGYY 161 >gi|168705106|ref|ZP_02737383.1| flagellar basal-body rod protein FlgG [Gemmata obscuriglobus UQM 2246] Length = 261 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 13/126 (10%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA--SGKEYLSKEV- 70 A L ++N++N+DT G++T ++ F + + + + + V SG + S V Sbjct: 15 AASTYLDVTSNNIANSDTPGYKTGQITFQDQLYRAADPVGAPTTGVTPPSGTQIGSGVVV 74 Query: 71 ---------GSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 G+ + + D A++G+ +F + P G TR G F + G LV+ G Sbjct: 75 DAITGKFTQGAALESTGRFDLAIQGEGFFQVILPDGSTGYTRAGNFVTDNTGQLVTPQGY 134 Query: 121 YPVLDM 126 V D+ Sbjct: 135 RLVSDL 140 >gi|3286760|emb|CAA05173.1| flagellar hook subunit protein [Campylobacter jejuni] Length = 862 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 20/125 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFR------------TIKVKFSEVVG-AIKNDIDQKI 56 A Q+A++ +N+SN +T GF+ T+K+ + G +N + + Sbjct: 14 AHQVAMDVE----GNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRGGQNPLQIGL 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 S + + GS +T + D A+ GD +F + G+ LTRDG FK+ G+ Sbjct: 70 GVSVSSTTRIHSQ-GSVQTTNSNTDVAINGDGFFMVSDDGGLTNYLTRDGAFKLDAYGNF 128 Query: 115 VSASG 119 V+ SG Sbjct: 129 VNNSG 133 >gi|218886899|ref|YP_002436220.1| hypothetical protein DvMF_1808 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757853|gb|ACL08752.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 501 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKISFVASGKEYLSKEV- 70 L Q + V++N++N +TVGF+ + F +++ N IS V G Sbjct: 15 LAQGMQAVSNNLANVNTVGFKQQQALFEDLMSQYAGTGNSASTSISQVGLGSRLTDIRTV 74 Query: 71 ---GSFISTGTEL-DFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY----- 121 GS+ S GT++ D ++ G +F + TR G F+ G+LV +G Sbjct: 75 YGQGSYES-GTDITDLSINGKGFFQVSLGGKTHYTRAGNFRFDKGGNLVDPNGFVLNGRA 133 Query: 122 --PVLDMASVPIQIPQKDEIFNV 142 ++ A+ PI +P + NV Sbjct: 134 ITNGVEGATGPISLPPGADGRNV 156 >gi|212639558|ref|YP_002316078.1| flagellar hook protein FlgE [Anoxybacillus flavithermus WK1] gi|212561038|gb|ACJ34093.1| Flagellar hook protein FlgE [Anoxybacillus flavithermus WK1] Length = 460 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 41/168 (24%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----------AIKN 50 M S G+ + +L + +N+SN +T G++ +V F ++V + Sbjct: 1 MLRSMFTGIGGIRNFQYKLDVIGNNISNVNTYGYKKARVTFKDLVSQQISAATSSTGTRG 60 Query: 51 DIDQKISFVASGKEYLS--KEVGSFISTGTELDFALEGDAWF-----------ALESPRG 97 I+ K + SG + GS +T LD AL GD +F +++ P G Sbjct: 61 GINGKQIGLGSGLGSIETIHTQGSTQTTSRPLDLALGGDGFFVVGSINDVTLISMDGPAG 120 Query: 98 ------------------IILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 + TR G F + + G +V++ G+Y + + A Sbjct: 121 KLGTNKVNTGVPIDRVFNLSFTRAGNFYLDEYGYIVNSDGQYLIGEAA 168 >gi|326389474|ref|ZP_08211041.1| fagellar hook-basal body protein [Thermoanaerobacter ethanolicus JW 200] gi|325994479|gb|EGD52904.1| fagellar hook-basal body protein [Thermoanaerobacter ethanolicus JW 200] Length = 417 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 17/130 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISF---V 59 A + R+ + +N++N +TVG++ ++ F E+ G Q+I + Sbjct: 14 AHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGGGTNPQQIGLGVAI 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 AS ++ G T D +++G+ +F + + + TR G F +G LV+ G Sbjct: 74 ASIDTLFTR--GGAQRTDNPTDLSIDGNGFFIVSNGGANLYTRAGNFSFDSNGDLVTPDG 131 Query: 120 KYPVLDMASV 129 Y VL S Sbjct: 132 -YKVLGWMST 140 >gi|307264876|ref|ZP_07546438.1| fagellar hook-basal body protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920134|gb|EFN50346.1| fagellar hook-basal body protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 417 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 17/130 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISF---V 59 A + R+ + +N++N +TVG++ ++ F E+ G Q+I + Sbjct: 14 AHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGGGTNPQQIGLGVAI 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 AS ++ G T D +++G+ +F + + + TR G F +G LV+ G Sbjct: 74 ASIDTLFTR--GGAQRTDNPTDLSIDGNGFFIVSNGGANLYTRAGNFSFDSNGDLVTPDG 131 Query: 120 KYPVLDMASV 129 Y VL S Sbjct: 132 -YKVLGWMST 140 >gi|307699899|ref|ZP_07636950.1| putative flagellar hook protein FlgE [Mobiluncus mulieris FB024-16] gi|307614937|gb|EFN94155.1| putative flagellar hook protein FlgE [Mobiluncus mulieris FB024-16] Length = 512 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 14/135 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKI--- 56 M S G++ + L ++N++N +T GF++ +F + +K+ ++ Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVKSGATARLNER 60 Query: 57 -----SFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G + S G+ +TG LD + GD +F L+ G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKY 121 + G +V+A G + Sbjct: 121 GLDAKGQVVAADGSF 135 >gi|21672604|ref|NP_660671.1| flagellar hook protein FlgE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008456|sp|Q8K9K6|FLGE_BUCAP RecName: Full=Flagellar hook protein flgE gi|21623235|gb|AAM67882.1| flagellar hook protein FlgE [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 409 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKEYLSKEVGSFIST 76 + V++N++N T+GF++ F ++V N I + +++ + S G + T Sbjct: 17 IDIVSNNIANASTIGFKSSTPSFFDIVSHSFYSNQIIKSGVGISNLVQNFSD--GVLVQT 74 Query: 77 GTELDFALEGDAWF-ALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 +LD + D +F L+S + TR+G F + + ++V+ G Y Sbjct: 75 NRDLDLGIVQDGFFRVLDSKGYVYYTRNGHFLLDKNKNIVNGQGMY 120 >gi|144900942|emb|CAM77806.1| flagellar hook protein FlgE precursor [Magnetospirillum gryphiswaldense MSR-1] Length = 430 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV-ASG 62 + N + A A LS ++DN+SN+ T G++ F +V + V AS Sbjct: 6 AMNSAVTALKAQSTALSIISDNLSNSSTTGYKANTTSFKTLVTQSYSSTSYASGGVTASV 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKV 108 ++ ++ + G T D AL+GD +F + + TRDG F++ Sbjct: 66 RQNVAAQ-GVISGTSNSTDLALDGDGFFVVSYGATGEETFFTRDGEFEI 113 >gi|227876747|ref|ZP_03994856.1| flagellar hook protein [Mobiluncus mulieris ATCC 35243] gi|306817694|ref|ZP_07451436.1| flagellar hook protein FlgE [Mobiluncus mulieris ATCC 35239] gi|227842644|gb|EEJ52844.1| flagellar hook protein [Mobiluncus mulieris ATCC 35243] gi|304649508|gb|EFM46791.1| flagellar hook protein FlgE [Mobiluncus mulieris ATCC 35239] Length = 466 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 14/135 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------K 49 M S G++ + L ++N++N +T GF++ +F + + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVRSGAAPRLNER 60 Query: 50 NDIDQKISFVASGKEYLSKEV--GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 ++ + + ++ G+ +TG LD + GD +F L+ G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKY 121 + G +V+A G + Sbjct: 121 GLDAQGQVVAADGSF 135 >gi|304316900|ref|YP_003852045.1| fagellar hook-basal body protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778402|gb|ADL68961.1| fagellar hook-basal body protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 420 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 40/159 (25%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG-- 71 A + + + +N++N +TVGF+ ++ F E+ I + SG ++VG Sbjct: 14 AHQAEMDVIGNNIANVNTVGFKASRMTFKEI---FNQTIKGASAPQGSGGGTNPQQVGLG 70 Query: 72 --------SFISTGTE-----LDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 F + G++ D +++G+ +F + + + TR G F +G LV+ Sbjct: 71 VAIASIDTLFTNGGSQRTDNPTDLSIDGNGFFIVNNGGANLYTRAGNFSFDSNGDLVTPD 130 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 G Y V+ G ISQ GK + T Sbjct: 131 G-YKVM---------------------GWISQDGKTVNT 147 >gi|84502376|ref|ZP_01000512.1| flagellar hook protein FlgE, putative [Oceanicola batsensis HTCC2597] gi|84389188|gb|EAQ01985.1| flagellar hook protein FlgE, putative [Oceanicola batsensis HTCC2597] Length = 422 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 16/120 (13%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVASGKEYLSKEV 70 +A + ++ ++ N++N+DT GFR F++++ GA S V + + + + Sbjct: 1 MANSKAVARISYNIANSDTYGFRR---SFAQMLTSGATIPTGTVSASGVRAEVVHQNTQD 57 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI---------ILTRDGRFKVTDDGSLVSASGKY 121 G+ ++TG + A+ G+ +FA+ R I +TR G F+ +G L +ASG Y Sbjct: 58 GTPLTTGAATNLAISGNGFFAVT--RNINEGTGEPEHFMTRAGDFQPDSEGYLRNASGMY 115 >gi|170751911|ref|YP_001758171.1| hypothetical protein Mrad2831_5543 [Methylobacterium radiotolerans JCM 2831] gi|170658433|gb|ACB27488.1| protein of unknown function DUF1078 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 461 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 18/133 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 +QTS + GL +Q +S ++ N++N+ T G++ I F +++ + D++I+ Sbjct: 7 LQTSVS-GLQSQ---SYAISNISGNIANSQTTGYKRIDTSFVDLMS--EKTPDREIAGSV 60 Query: 61 SGKEYLSKEV-GSFISTGTELDFALEGDAWFALESPRGI-----------ILTRDGRFKV 108 K L+ + G+ +S+ + A+ G +F + G + TR G F Sbjct: 61 LAKSQLTNTLAGNIVSSSVPTNMAINGQGFFTVVQKTGDANGATTFGGTDLYTRRGDFAQ 120 Query: 109 TDDGSLVSASGKY 121 DG LV+ +G Y Sbjct: 121 DKDGYLVNGAGGY 133 >gi|294501850|ref|YP_003565550.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium QM B1551] gi|294351787|gb|ADE72116.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium QM B1551] Length = 273 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 21/127 (16%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---FVASG--------- 62 L+Q+L + N+SNT+T G++ F++++ N+ + K + +G Sbjct: 15 LQQQLDVIGHNLSNTNTPGYKARDASFNDMLYQQVNNQEDKGTEKRLTPAGIRQGTGAYL 74 Query: 63 -KEYLSKEVGSFISTGTELDFALEG-DAWFAL---ESPRGIILTRDGRFKVTDDG----S 113 + L+ G+F +T LD A + +F + +S + + TRDG F ++ +G Sbjct: 75 DQTSLNMTQGAFQNTDKLLDVAASNPNVYFQVAVNDSQQPVQYTRDGSFHLSPEGPNDVK 134 Query: 114 LVSASGK 120 LV+ SG+ Sbjct: 135 LVNGSGQ 141 >gi|212709492|ref|ZP_03317620.1| hypothetical protein PROVALCAL_00534 [Providencia alcalifaciens DSM 30120] gi|212687830|gb|EEB47358.1| hypothetical protein PROVALCAL_00534 [Providencia alcalifaciens DSM 30120] Length = 422 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 12/136 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L ++ +N++N+ T GF+ F+++ + + ++ A + Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAG--SGVGLGVNVAAVTQ 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + + G T D A+ G+ +F ++ G + +RDG+F G+LV+ G Sbjct: 60 NF---KDGPITRTDRATDVAISGNGFFRVQDQNGDVYYSRDGQFLRDKSGNLVNNQGMVV 116 Query: 120 -KYP--VLDMASVPIQ 132 YP V D +V +Q Sbjct: 117 TGYPASVDDKGNVTVQ 132 >gi|224373467|ref|YP_002607839.1| flagellar hook protein FlgE [Nautilia profundicola AmH] gi|223588607|gb|ACM92343.1| flagellar hook protein FlgE [Nautilia profundicola AmH] Length = 853 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 32/152 (21%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------------KNDIDQKI 56 A Q+A++ A+N++N +TVGF+ + F ++ KN + + Sbjct: 14 AHQIAMDVE----ANNIANVNTVGFKYSRTNFQNLLSQTVKSATAPQGDLGGKNSLQIGL 69 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSL 114 S E + K+ GS +T D A+ GD +F + G TR G F +G+ Sbjct: 70 GTSVSAVETMFKQ-GSIQNTDKNTDMAINGDGFFVVSGDGGKTYRYTRAGDFTFDANGNF 128 Query: 115 VSASG----------KYPVLDMAS--VPIQIP 134 V +G + +D AS PI IP Sbjct: 129 VDPNGYIVQGWLADPETHTIDTASGVKPISIP 160 >gi|296123915|ref|YP_003631693.1| flagellar basal body FlaE domain protein [Planctomyces limnophilus DSM 3776] gi|296016255|gb|ADG69494.1| flagellar basal body FlaE domain protein [Planctomyces limnophilus DSM 3776] Length = 562 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 14/119 (11%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSE------VVGAIKNDID-----QKISFVASGKE 64 E + + +N++N T GF+ V+F +G+ D +++ A+ Sbjct: 18 EVTIDVLGNNIANAGTNGFKASTVRFQTQLARTLSIGSRPTATDGGSNPRQVGLGAT-TS 76 Query: 65 YLSKEV--GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 +SK+ GS ++ + D A++G+ +F ++ G TR+G F + D LV+ G++ Sbjct: 77 AISKDFTQGSLSNSTSASDLAIQGEGFFVMDGSSGRTYTRNGNFLRSSDSYLVNDQGQF 135 >gi|251799753|ref|YP_003014484.1| flagellar basal body rod protein [Paenibacillus sp. JDR-2] gi|247547379|gb|ACT04398.1| flagellar basal body rod protein [Paenibacillus sp. JDR-2] Length = 288 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 13/81 (16%) Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 ++F ASGK Y+S + D + A+F L+ G I TR G F +T DG L Sbjct: 103 MAFDASGK-YVSPDG----------DVTFQPQAFFTLQDKNGEIRYTRGGSFTLTSDGFL 151 Query: 115 VSASGKYPVLDMASVPIQIPQ 135 V+ G VL PIQ PQ Sbjct: 152 VAGDGS-NVLGADGNPIQFPQ 171 >gi|320529456|ref|ZP_08030543.1| fagellar hook-basal body protein [Selenomonas artemidis F0399] gi|320138293|gb|EFW30188.1| fagellar hook-basal body protein [Selenomonas artemidis F0399] Length = 661 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 27/123 (21%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS---------------GK 63 + + +N++N +T GF+ +V F+++ I Q +S +S G Sbjct: 1 MDVIGNNIANVNTTGFKASRVTFADM-------ISQNLSGASSPGTTVGGTNPKQIGLGT 53 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV-SAS 118 S ++ G STG D AL G+ F ++ TR+G F+ DG+ V S Sbjct: 54 SVSSVDLLFNDGVAQSTGKNTDVALSGNGTFVVKKGNETYYTRNGAFEFDADGNYVMPGS 113 Query: 119 GKY 121 G Y Sbjct: 114 GHY 116 >gi|218509843|ref|ZP_03507721.1| flagellar hook protein FlgE [Rhizobium etli Brasil 5] Length = 65 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 3/38 (7%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 G+ AQ RLSTV+DN++N +T G++ + FS +V Sbjct: 13 GMNAQ---ANRLSTVSDNIANVNTTGYKAVSTSFSSLV 47 >gi|269976274|ref|ZP_06183270.1| flagellar hook protein FlgE [Mobiluncus mulieris 28-1] gi|269935603|gb|EEZ92141.1| flagellar hook protein FlgE [Mobiluncus mulieris 28-1] Length = 472 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 14/135 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKI--- 56 M S G++ + L ++N++N +T GF++ +F + +K+ ++ Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVKSGAAPRLNER 60 Query: 57 -----SFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G + S G+ +TG LD + GD +F L+ G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKY 121 + G +V+A G + Sbjct: 121 GLDAQGQVVAADGSF 135 >gi|320179221|gb|EFW54179.1| Flagellar basal-body rod protein FlgG [Shigella boydii ATCC 9905] Length = 156 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 14/130 (10%) Query: 101 TRDGRFKVTDDGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVI 155 TRDG F+V +G LV+A G P + + + + I +D + +V ++G+ + Q G++ Sbjct: 11 TRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLN 70 Query: 156 AT-----MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 T GL S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ Sbjct: 71 LTTFMNDTGLESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEEL 126 Query: 211 GQMIHLTQKF 220 MI + + + Sbjct: 127 VNMIQVQRAY 136 >gi|225010314|ref|ZP_03700786.1| GTP-binding protein LepA [Flavobacteria bacterium MS024-3C] gi|225005793|gb|EEG43743.1| GTP-binding protein LepA [Flavobacteria bacterium MS024-3C] Length = 598 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Query: 34 FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 FR ++ F + G IK QKI FVA+GK Y + EVG+ Sbjct: 202 FRGVETYFRVINGEIKKG--QKIKFVATGKHYFADEVGTL 239 >gi|218660672|ref|ZP_03516602.1| flagellar hook protein FlgE [Rhizobium etli IE4771] Length = 374 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 76 TGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 T + D A+ GD +F ++ G +LTR G F+ D+G+LV+A+G Sbjct: 19 TTSTTDLAISGDGFFIVQGADGTPVLTRAGDFQKDDEGNLVNAAG 63 >gi|168180921|ref|ZP_02615585.1| flagellar hook protein FlgE [Clostridium botulinum NCTC 2916] gi|182668204|gb|EDT80183.1| flagellar hook protein FlgE [Clostridium botulinum NCTC 2916] gi|322806984|emb|CBZ04554.1| flagellar hook protein FlgE [Clostridium botulinum H04402 065] Length = 334 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 38/165 (23%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--------SEVVGAIKNDI 52 M S G++ A + RL V +N++N +T F++ ++F S G N Sbjct: 1 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 V G + + G+ +TG LD A++G +F + + Sbjct: 61 GTNPRQVGLGVQVAGIFTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGD 120 Query: 97 --GII--------LTRDGRFKVTDDGSLVSASG----KYPVLDMA 127 G I T+DG F + +DGSL+++ G Y + D A Sbjct: 121 NEGAINGGTMEVSFTKDGSFNLDEDGSLITSDGLRIMGYAINDAA 165 >gi|126662467|ref|ZP_01733466.1| GTP-binding protein [Flavobacteria bacterium BAL38] gi|126625846|gb|EAZ96535.1| GTP-binding protein [Flavobacteria bacterium BAL38] Length = 598 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 11/53 (20%) Query: 34 FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG---------SFISTG 77 FR I+V F + G IK QKI F+A+G EY + EVG S ISTG Sbjct: 202 FRGIEVIFRVINGEIKKG--QKIKFMATGNEYFADEVGTLKLNQVPKSVISTG 252 >gi|309788147|ref|ZP_07682753.1| flagellar basal-body rod protein flgG [Shigella dysenteriae 1617] gi|308923999|gb|EFP69500.1| flagellar basal-body rod protein flgG [Shigella dysenteriae 1617] Length = 156 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 14/130 (10%) Query: 101 TRDGRFKVTDDGSLVSASG--KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS--QKGKVI 155 TRDG F+V +G LV+A G P + + + + I +D + +V ++G+ + Q G++ Sbjct: 11 TRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLN 70 Query: 156 AT-----MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 T GL S+ + + ++SG +PN TP + +G+ + +G++E SN N E+ Sbjct: 71 LTTFMNDTGLESIGENL-YTETQSSG-APN-ESTPGLNGAGL-LYQGYVETSNVNVAEEL 126 Query: 211 GQMIHLTQKF 220 MI + + + Sbjct: 127 VNMIQVQRAY 136 >gi|289578425|ref|YP_003477052.1| fagellar hook-basal body protein [Thermoanaerobacter italicus Ab9] gi|289528138|gb|ADD02490.1| fagellar hook-basal body protein [Thermoanaerobacter italicus Ab9] Length = 413 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 17/130 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISF---V 59 A + R+ + +N++N +TVG++ ++ F E+ G Q+I + Sbjct: 14 AHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGGGTNPQQIGLGVAI 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 AS ++ G T D +++G+ +F + + + TR G F G LV+ G Sbjct: 74 ASIDTLFTR--GGAQRTDNPTDLSIDGNGFFIVSNGGANLYTRAGNFSFDSQGDLVTPDG 131 Query: 120 KYPVLDMASV 129 Y VL S Sbjct: 132 -YKVLGWMST 140 >gi|317051681|ref|YP_004112797.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] gi|316946765|gb|ADU66241.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] Length = 1341 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 22/132 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + ++ + + +N+SN +T G++ + F++V+ IS Sbjct: 1 MLQSMYAGVSGLVNHQRSMDIIGNNISNVNTFGYKKARAGFADVM---------SISIGG 51 Query: 61 SGKEYLSKEVGS--------FISTGTE-----LDFALEGDAWFALESPRGIILTRDGRFK 107 SG + +G+ F G E D A+ G +F + + TR+G F Sbjct: 52 SGVNPMQVGIGTRVNSTNLIFSQGGIEASNKSTDMAIAGRGFFVVSNGAQNFFTRNGNFT 111 Query: 108 VTDDGSLVSASG 119 +G +V+ G Sbjct: 112 FNKEGMMVTPDG 123 >gi|292670487|ref|ZP_06603913.1| flagellar basal body and hook protein [Selenomonas noxia ATCC 43541] gi|292647897|gb|EFF65869.1| flagellar basal body and hook protein [Selenomonas noxia ATCC 43541] Length = 506 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 26/113 (23%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS----KEVG------ 71 + +N++N +T GF+ +V F ++ + Q +S AS + K+VG Sbjct: 4 IGNNIANVNTTGFKAGRVTFEDM-------LSQTLSGAASPGTTIGGTNPKQVGLGVSVG 56 Query: 72 ---------SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 S STG D AL G+A F ++ TR+G F+ G+ V Sbjct: 57 GIDTIFSDGSVQSTGKNTDLALTGNALFVVKRGDQTYYTRNGAFEFDAKGNYV 109 >gi|256370963|ref|YP_003108787.1| protein of unknown function DUF1078 domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007547|gb|ACU53114.1| protein of unknown function DUF1078 domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 431 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ + TGT D A++G + + TRDG ++ G LV+ASG L M VP Sbjct: 84 GTIVQTGTSTDVAIQGQGFLVVNQGGQNYYTRDGALQLDGAGQLVTASG---ALVMGWVP 140 >gi|238927475|ref|ZP_04659235.1| flagellar hook protein FlgE [Selenomonas flueggei ATCC 43531] gi|238884757|gb|EEQ48395.1| flagellar hook protein FlgE [Selenomonas flueggei ATCC 43531] Length = 680 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 20/123 (16%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDIDQKISFVA 60 + R+ V +N++N +T GF+ +V F++++ G I +S + Sbjct: 16 QTRMDVVGNNIANVNTTGFKASRVTFADMISQNLSGASAPNGTIGGVNPKQIGLGMSVAS 75 Query: 61 SGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSL-VSAS 118 + Y + GS TG D A+ GD F + + TR+G F +G+L + ++ Sbjct: 76 TDLLYTN---GSVQQTGKNTDIAISRGDGLFVVSKGQQKFYTRNGAFSFDAEGNLTIPST 132 Query: 119 GKY 121 G Y Sbjct: 133 GLY 135 >gi|187778756|ref|ZP_02995229.1| hypothetical protein CLOSPO_02351 [Clostridium sporogenes ATCC 15579] gi|187772381|gb|EDU36183.1| hypothetical protein CLOSPO_02351 [Clostridium sporogenes ATCC 15579] Length = 350 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 34/153 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--------SEVVGAIKNDI 52 M S G++ A + RL V +N++N +T F++ ++F S G N Sbjct: 17 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 76 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 V G + + G+ +TG LD A++G +F + + Sbjct: 77 GTNPRQVGLGVQVAGIFTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGD 136 Query: 97 --GII--------LTRDGRFKVTDDGSLVSASG 119 G I T+DG F + +DGSL+++ G Sbjct: 137 DEGAINGGTMEVSFTKDGSFNLDEDGSLITSDG 169 >gi|50251243|dbj|BAD28023.1| putative LepA protein [Oryza sativa Japonica Group] gi|50252173|dbj|BAD28168.1| putative LepA protein [Oryza sativa Japonica Group] Length = 680 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 34 FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE 93 +R + V F V G+IK KI F+ASGKEY++ E+G ++ G+ + Sbjct: 275 YRGVIVYFRVVDGSIKKG--DKICFMASGKEYVADEIGVLSPNQMQVSELYAGEVGYLSA 332 Query: 94 SPRGIILTRDG 104 S R + R G Sbjct: 333 SIRSVADARVG 343 >gi|317411664|sp|B9F2U5|GUFP_ORYSJ RecName: Full=Translation factor GUF1 homolog, chloroplastic; AltName: Full=Elongation factor 4 homolog; Short=EF-4; AltName: Full=GTPase GUF1 homolog; AltName: Full=Ribosomal back-translocase; Flags: Precursor gi|222622207|gb|EEE56339.1| hypothetical protein OsJ_05443 [Oryza sativa Japonica Group] Length = 680 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 34 FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE 93 +R + V F V G+IK KI F+ASGKEY++ E+G ++ G+ + Sbjct: 275 YRGVIVYFRVVDGSIKKG--DKICFMASGKEYVADEIGVLSPNQMQVSELYAGEVGYLSA 332 Query: 94 SPRGIILTRDG 104 S R + R G Sbjct: 333 SIRSVADARVG 343 >gi|226950067|ref|YP_002805158.1| flagellar hook protein FlgE [Clostridium botulinum A2 str. Kyoto] gi|226841875|gb|ACO84541.1| flagellar hook protein FlgE [Clostridium botulinum A2 str. Kyoto] Length = 334 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 34/153 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--------SEVVGAIKNDI 52 M S G++ A + RL V +N++N +T F++ ++F S G N Sbjct: 1 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 V G + + G+ +TG LD A++G +F + + Sbjct: 61 GTNPRQVGLGVQVAGIFTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGD 120 Query: 97 --GII--------LTRDGRFKVTDDGSLVSASG 119 G I T+DG F + +DGSL+++ G Sbjct: 121 NEGAINGGTMEVSFTKDGSFNLDEDGSLITSDG 153 >gi|323165587|gb|EFZ51374.1| flagellar basal-body rod protein flgG [Shigella sonnei 53G] Length = 143 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 25/138 (18%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKND--------- 51 GL AQ + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 11 GLDAQ---QTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQ 67 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 I + VA+ E L + G+ T D A++G +F + P G TRDG F+V Sbjct: 68 IGTGVRPVAT--ERLHSQ-GNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQ 124 Query: 111 DGSLV--SASGKYPVLDM 126 +G LV S + P M Sbjct: 125 NGQLVVFRCSQRSPFRRM 142 >gi|328542111|ref|YP_004302220.1| flagellar hook-basal body protein [polymorphum gilvum SL003B-26A1] gi|326411861|gb|ADZ68924.1| Flagellar hook-basal body protein [Polymorphum gilvum SL003B-26A1] Length = 545 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + G++ +A LST+++N+SN +T G++ + FS +V VAS Sbjct: 6 ALSTGVSGVIAQGSSLSTISNNISNLNTPGYKGSRTLFSHMVTGGGRPGTPVSGSVASLD 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESP-----RGIILTRDGRFKVTDDGSLVSA 117 + G+ I+T D AL G +F + +SP R F G LVS+ Sbjct: 66 QRDLTAQGAIINTSRPADLALVGKGFFVVTDSPFVGPETSYFYQRTSSFSENTQGYLVSS 125 Query: 118 SGKY 121 G + Sbjct: 126 QGLH 129 >gi|317411663|sp|B8AI54|GUFP_ORYSI RecName: Full=Translation factor GUF1 homolog, chloroplastic; AltName: Full=Elongation factor 4 homolog; Short=EF-4; AltName: Full=GTPase GUF1 homolog; AltName: Full=Ribosomal back-translocase; Flags: Precursor gi|218190101|gb|EEC72528.1| hypothetical protein OsI_05919 [Oryza sativa Indica Group] Length = 636 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 34 FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE 93 +R + V F V G+IK KI F+ASGKEY++ E+G ++ G+ + Sbjct: 231 YRGVIVYFRVVDGSIKKG--DKICFMASGKEYVADEIGVLSPNQMQVSELYAGEVGYLSA 288 Query: 94 SPRGIILTRDG 104 S R + R G Sbjct: 289 SIRSVADARVG 299 >gi|34498339|ref|NP_902554.1| flagellar basal-body rod protein flgF [Chromobacterium violaceum ATCC 12472] gi|34104193|gb|AAQ60552.1| flagellar basal-body rod protein flgF [Chromobacterium violaceum ATCC 12472] Length = 246 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTE 79 +T A+N++N +T F+ + + + D ++V GS TG Sbjct: 20 ATTANNLANVNTNAFKADLAAYRAL--PVVGDGAPTRTYVVDNTIGFDASQGSLQHTGNP 77 Query: 80 LDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDE 138 DFAL +FA++ G TRDG + + G + + SG + D PI +P + Sbjct: 78 SDFALGTPGFFAVQGADGQEAYTRDGGYVLDATGLMRTHSGLLIMGDGG--PITVPAGSQ 135 Query: 139 IFNVGEKGEI 148 + +G G + Sbjct: 136 V-QLGSDGSV 144 >gi|237796094|ref|YP_002863646.1| flagellar hook protein FlgE [Clostridium botulinum Ba4 str. 657] gi|229263494|gb|ACQ54527.1| flagellar hook protein FlgE [Clostridium botulinum Ba4 str. 657] Length = 332 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 34/153 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--------SEVVGAIKNDI 52 M S G++ A + +L V +N++N +T F++ ++F S G N Sbjct: 1 MLRSMYSGISGLKAQQTKLDVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 + G + Y G+ +TG LD A++G +F + + Sbjct: 61 GTNPRQIGLGVQVAGMYTKFTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGDTGD 120 Query: 97 --GII--------LTRDGRFKVTDDGSLVSASG 119 G I TRDG F + DGSL+++ G Sbjct: 121 NAGAITGGSMEVSFTRDGSFTLGKDGSLITSDG 153 >gi|168182737|ref|ZP_02617401.1| flagellar hook protein FlgE [Clostridium botulinum Bf] gi|182674150|gb|EDT86111.1| flagellar hook protein FlgE [Clostridium botulinum Bf] Length = 332 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 34/153 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--------SEVVGAIKNDI 52 M S G++ A + +L V +N++N +T F++ ++F S G N Sbjct: 1 MLRSMYSGISGLKAQQTKLDVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 + G + Y G+ +TG LD A++G +F + + Sbjct: 61 GTNPRQIGLGVQVAGMYTKFTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGDTGD 120 Query: 97 --GII--------LTRDGRFKVTDDGSLVSASG 119 G I TRDG F + DGSL+++ G Sbjct: 121 NAGAITGGSMEVSFTRDGSFTLGKDGSLITSDG 153 >gi|183598617|ref|ZP_02960110.1| hypothetical protein PROSTU_02017 [Providencia stuartii ATCC 25827] gi|188020796|gb|EDU58836.1| hypothetical protein PROSTU_02017 [Providencia stuartii ATCC 25827] Length = 406 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L ++ +N++N+ T GF+ F+++ + + ++ A + Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAG--SGVGLGVNVAAVTQ 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + + G T D A+ G+ +F ++ G I +RDG+F G+LV+ G Sbjct: 60 NF---KDGPITRTDRPTDVAISGNGFFRVQDQNGDIFYSRDGQFIRDKSGNLVNNQGMTV 116 Query: 120 -KYPV 123 YP Sbjct: 117 TGYPA 121 >gi|289679023|ref|ZP_06499913.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. syringae FF5] Length = 92 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 18/92 (19%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGF-------RTIKVKFSEVVGAIKNDIDQKISFVASG 62 A++ A+ Q+ A+N++N T GF R++ V F EV+ + + ++ G Sbjct: 12 ASENAIAQKAH--ANNLANVSTNGFMRDLEQARSMPV-FGEVMPSRAYAMSER-----PG 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALES 94 ++ G+ + TG ELD A++GD W A+++ Sbjct: 64 TDF---SAGAMVQTGRELDIAVKGDGWIAVQT 92 >gi|307719964|ref|YP_003891104.1| flagellar hook protein FlgE [Sulfurimonas autotrophica DSM 16294] gi|306978057|gb|ADN08092.1| flagellar hook protein FlgE [Sulfurimonas autotrophica DSM 16294] Length = 709 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 18/113 (15%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL-- 80 ++N++N +TVGF+ + FS+++ K I GK + +GS +S+ T + Sbjct: 23 SNNIANVNTVGFKYSRANFSDLLAQTK-AIATAPQGQLGGKNPVQVGLGSTVSSMTRIFS 81 Query: 81 -----------DFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASG 119 D A++GD +F + SP G TR G FK G+ V +G Sbjct: 82 QGSIQNSDKNTDVAIQGDGFFII-SPDGGNTYKYTRAGDFKFDAGGNFVDNNG 133 >gi|327441046|dbj|BAK17411.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 329 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 31/154 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N+SN +T G++ + F +++ ++ + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNISNVNTYGYKKERTIFKDLISQTQSGASGPSTTRG 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII--------- 99 V G + + G+ +TG LD A+ GD +F + + Sbjct: 61 GVNAIQVGLGSQLAAIDTIHNAGAMQTTGRTLDLAISGDGFFMVADATDFVQGDPANGEP 120 Query: 100 ----------LTRDGRFKVTDDGSLVSASGKYPV 123 TR G F + +G LV+ GKY V Sbjct: 121 ATAGGYTSTLYTRAGNFYMDRNGFLVNGDGKYLV 154 >gi|256750749|ref|ZP_05491634.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750332|gb|EEU63351.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 417 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 17/129 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISF---V 59 A + R+ + +N++N +TVG++ ++ F E+ G Q+I + Sbjct: 14 AHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGGGTNPQQIGLGVAI 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 AS ++ G T D +++G+ +F + + TR G F G LV+ G Sbjct: 74 ASIDTLFTR--GGAQRTDNPTDLSIDGNGFFIVSKGGANLYTRAGNFSFDSQGDLVTPDG 131 Query: 120 KYPVLDMAS 128 Y VL S Sbjct: 132 -YKVLGWMS 139 >gi|297544701|ref|YP_003677003.1| fagellar hook-basal body protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842476|gb|ADH60992.1| fagellar hook-basal body protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 413 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 19/129 (14%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG---- 71 + R+ + +N++N +TVG++ ++ F E+ I + +G +++G Sbjct: 16 QARMDVIGNNIANVNTVGYKASRMTFKEI---FSQTIKGASAPQGNGGGTNPQQIGLGVA 72 Query: 72 ------SFISTGTE-----LDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 F S G + D +++G+ +F + + + TR G F G LV+ G Sbjct: 73 IASIDTLFTSGGAQRTDNPTDLSIDGNGFFIVSNGGANLYTRAGNFSFDSQGDLVTPDG- 131 Query: 121 YPVLDMASV 129 Y VL S Sbjct: 132 YKVLGWMST 140 >gi|329849962|ref|ZP_08264808.1| flagellar hook protein flgE [Asticcacaulis biprosthecum C19] gi|328841873|gb|EGF91443.1| flagellar hook protein flgE [Asticcacaulis biprosthecum C19] Length = 474 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 21 TVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 T+++N++N +T G++ + F+ +V + V + + G + + Sbjct: 23 TISNNIANANTTGYKRVTTNFTNLVSGTSGTATYASNGVTAAVQQNMTARGELNAASSGY 82 Query: 81 DFALEGDAWF-------ALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 ++G +F A+ ++ TRDG F G L +A+G Y Sbjct: 83 SLGIDGQGFFVTSDTSDAINQGSTMLFTRDGSFNTDTSGYLRNAAGLY 130 >gi|34558065|ref|NP_907880.1| flagellar hook protein FlgE [Wolinella succinogenes DSM 1740] gi|34483783|emb|CAE10780.1| FLAGELLAR HOOK PROTEIN [Wolinella succinogenes] Length = 716 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 14/126 (11%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY-- 65 G++ A + L +N++N +T GF+ + FS+++ + + +Y Sbjct: 8 GVSGMQAHQVALDVEGNNIANVNTTGFKYSRANFSDMLSQVNRIATSPYGGLGGQNDYSI 67 Query: 66 -LSKEV---------GSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGS 113 L + GS T ++D A+ GD +F + G TRDG F G+ Sbjct: 68 GLGTSINSTTKIFGQGSIQDTTNKMDLAIGGDGFFIVSGNGGRTNAYTRDGAFGFDAAGN 127 Query: 114 LVSASG 119 +V+ +G Sbjct: 128 MVNNAG 133 >gi|251823760|ref|NP_001156565.1| phosphoribosylformylglycinamidine synthase [Acyrthosiphon pisum] Length = 1325 Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 2/43 (4%) Query: 95 PRGIILTRDGRFKVTDDGSLVSASGKYPV-LDMASVPIQIPQK 136 P GI+ T DG+ +T+D + +S +GKYPV LD+ + ++P+K Sbjct: 587 PVGIV-TNDGKVVLTEDDNPISENGKYPVNLDLDMILSKVPRK 628 >gi|167037660|ref|YP_001665238.1| hypothetical protein Teth39_1248 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116075|ref|YP_004186234.1| flagellar hook-basal body protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856494|gb|ABY94902.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929166|gb|ADV79851.1| flagellar hook-basal body protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 417 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 17/129 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISF---V 59 A + R+ + +N++N +TVG++ ++ F E+ G Q+I + Sbjct: 14 AHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGGGTNPQQIGLGVAI 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 AS ++ G T D +++G+ +F + + TR G F G LV+ G Sbjct: 74 ASIDTLFTR--GGAQRTDNPTDLSIDGNGFFIVSKGGANLYTRAGNFSFDSQGDLVTPDG 131 Query: 120 KYPVLDMAS 128 Y VL S Sbjct: 132 -YKVLGWMS 139 >gi|118475525|ref|YP_892884.1| flagellar hook protein FlgE [Campylobacter fetus subsp. fetus 82-40] gi|118414751|gb|ABK83171.1| flagellar hook protein FlgE [Campylobacter fetus subsp. fetus 82-40] Length = 911 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 20/125 (16%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQKISF-VAS 61 A Q+A++ DN++N +TVGF+ + F++ V A + D+ K S + Sbjct: 14 AHQIAMDVE----GDNIANVNTVGFKYSRASFADLFSQTAKVATAPQGDLGGKNSMQIGL 69 Query: 62 GKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSL 114 G + S + GS +T D A++GD +F + SP G TR+G F G+ Sbjct: 70 GTQINSVTKIFKQGSVQTTDKNTDLAIQGDGFFVV-SPDGGKTYKYTRNGDFSRDSLGNF 128 Query: 115 VSASG 119 V +G Sbjct: 129 VDKNG 133 >gi|326791535|ref|YP_004309356.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] gi|326542299|gb|ADZ84158.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] Length = 432 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 16/119 (13%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------------KNDIDQKISFVA 60 + R+ + +N++N +T+G+++ +V F++V +N + + Sbjct: 16 QTRMDVIGNNIANVNTIGYKSQRVTFNDVFSQTLSSASAASDETGRGGRNPMQVGLGVNV 75 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 S + L + G+ T D + G+ + + G TR G + DG+L+ A+G Sbjct: 76 SSIDMLMTQ-GAAQRTDNPFDLMINGEGFIVVGDTNGTYFTRAGALRADVDGNLIIANG 133 >gi|203287754|ref|YP_002222769.1| flagellar basal-body rod protein [Borrelia recurrentis A1] gi|201084974|gb|ACH94548.1| flagellar basal-body rod protein [Borrelia recurrentis A1] Length = 135 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFVASGKEYLS--KEVG 71 R S VADN++N DT F+ KV F +E+ AI N+ +S + ++L KE+G Sbjct: 21 RQSVVADNIANVDTPNFKRSKVTFEAELERAILNEKTNNLSLIRGNNKHLDGFKELG 77 >gi|255323568|ref|ZP_05364698.1| flagellar hook protein [Campylobacter showae RM3277] gi|255299282|gb|EET78569.1| flagellar hook protein [Campylobacter showae RM3277] Length = 543 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 9/129 (6%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G F+ T LD A+ G +F + + G TR G F V + LV+ G Y VL + Sbjct: 78 GPFMKTDNVLDMAIGGKGFFGVTNGSGTYYTRAGSFGVDKERYLVTNQGNY-VLGTQNTL 136 Query: 131 IQI-PQKDEIFNVGE---KGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 Q+ P + I G + ++Q T+G + D+ G + + P P Sbjct: 137 TQVTPSQGAIEAFGRVNGRAAVTQA----YTLGADTTDLDVGDIGSQGKIRLPEFLYLPT 192 Query: 187 EDLSGVTVK 195 + S VT K Sbjct: 193 KPTSKVTFK 201 >gi|167040321|ref|YP_001663306.1| hypothetical protein Teth514_1684 [Thermoanaerobacter sp. X514] gi|300914405|ref|ZP_07131721.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307724359|ref|YP_003904110.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] gi|166854561|gb|ABY92970.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter sp. X514] gi|300889340|gb|EFK84486.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307581420|gb|ADN54819.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] Length = 417 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 17/129 (13%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----------GAIKNDIDQKISF---V 59 A + R+ + +N++N +TVG++ ++ F E+ G Q+I + Sbjct: 14 AHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGGGTNPQQIGLGVAI 73 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 AS ++ G T D +++G+ +F + + TR G F G LV+ G Sbjct: 74 ASIDTLFTR--GGAQRTDNPTDLSIDGNGFFIVSKGGANLYTRAGNFSFDSQGDLVTPDG 131 Query: 120 KYPVLDMAS 128 Y VL S Sbjct: 132 -YKVLGWMS 139 >gi|291558205|emb|CBL35322.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a] Length = 503 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 13/115 (11%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISFVASGKEYLSKEVG- 71 + + +N++N +T GF+T F EV G+ +++ ++ G +G Sbjct: 1 MDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQVGYGTKLGAIGQ 60 Query: 72 -----SFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 F + + D AL GD +F + G I +R G F V + G+LV ++G Sbjct: 61 VMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNLVDSNGN 115 >gi|203284215|ref|YP_002221955.1| flagellar basal-body rod protein [Borrelia duttonii Ly] gi|201083658|gb|ACH93249.1| flagellar basal-body rod protein [Borrelia duttonii Ly] Length = 135 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFVASGKEYLS--KEVG 71 R S VADN++N DT F+ KV F +E+ AI N+ +S + ++L KE+G Sbjct: 21 RQSVVADNIANVDTPNFKRSKVTFEAELERAILNEKTNNLSLIRGNNKHLDGFKELG 77 >gi|167628970|ref|YP_001679469.1| flagellar basal-body rod protein, putative [Heliobacterium modesticaldum Ice1] gi|167591710|gb|ABZ83458.1| flagellar basal-body rod protein, putative [Heliobacterium modesticaldum Ice1] Length = 267 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 20/171 (11%) Query: 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 D A+ G +F + P G TR+G+F + DG+LV+ G + V A I+IPQ + Sbjct: 98 DLAIIGRGYFVVMGPDGEERYTRNGQFSLRADGTLVTTEG-FAVQGTAGA-IRIPQGGNL 155 Query: 140 FNVGEKGEISQKGKVIATMGLYSVDMSQG----FVRRENSGISPNIPPTPLEDLSGVT-- 193 + G I +A + + D + G V+ +S N D GV Sbjct: 156 -RIDSDGRIFSGDTEVAQLRIVGYDETPGQAPPLVKAGDSLYRLN----EQGDGGGVRDL 210 Query: 194 ------VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ G LE +N N + EM QMI + + + I + ++ +A Sbjct: 211 AIGEREIRSGALELANVNVVQEMVQMISAARAYEANQKAIQSQDGTLEKAC 261 >gi|254455211|ref|ZP_05068645.1| flagellar basal body FlaE domain protein [Octadecabacter antarcticus 238] gi|198263495|gb|EDY87768.1| flagellar basal body FlaE domain protein [Octadecabacter antarcticus 238] Length = 267 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 91/236 (38%), Gaps = 35/236 (14%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVASGKEYLSKEV--GSFIS 75 +S V++N++N T FR FS++ GA + + + V S E + G+ + Sbjct: 16 ISVVSNNVANASTTAFRKSSASFSDLYSGASAETVSRTSTGVGSIVEQTRQNTKQGALME 75 Query: 76 TGTELDFALEGDAWFALESP-------RGIILTRDGRFKVTDDGSLVSASGK--YPVLDM 126 L+ AL G F +P + TRDG F + + G L S++ Y + Sbjct: 76 RDGVLNMALAGSGMFVTTTPNSDGTLSEALNFTRDGEFALDESGVLRSSTNDIVYGFDGI 135 Query: 127 ASVPIQ---IPQKDEI------FNVGEKGEI-----SQKGKVIATMGLYSV-------DM 165 +Q IP +E VG G I Q KV + + + + Sbjct: 136 GGTTLQKIVIPFVNETDTKLTSIEVGSDGLIEATYGEQGPKVAGQLAVATFANASSLQQL 195 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 G + + +P+ E V V G LE SN N E+ +I Q+F+ Sbjct: 196 GLGSFQASQASGAPSFGIAGSEGFGSVQV--GKLEASNVNLTTELTSLIRAQQQFS 249 >gi|313676845|ref|YP_004054841.1| integral membrane sensor signal transduction histidine kinase [Marivirga tractuosa DSM 4126] gi|312943543|gb|ADR22733.1| integral membrane sensor signal transduction histidine kinase [Marivirga tractuosa DSM 4126] Length = 473 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Query: 39 VKFSEVVGAIKNDIDQKISFVASGKEYLSKEV-GSFISTGTELDFALEGDAWFALESPRG 97 VKF++ +I+ D D++I + Y K V G+ IS + A + D + A+ R Sbjct: 334 VKFNQGADSIRLDYDEQIHHILKTDYYQLKVVLGNLISNAVKYHDAKKPDQYIAVRFER- 392 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDM 126 L+RD V D+G ++ ++ V DM Sbjct: 393 --LSRDVHISVEDNGIGIAPESQHKVFDM 419 >gi|291532057|emb|CBK97642.1| fagellar hook-basal body proteins [Eubacterium siraeum 70/3] Length = 503 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 13/115 (11%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQKISFVASGKEYLSKEVG- 71 + + +N++N +T GF+T F EV G+ +++ ++ G +G Sbjct: 1 MDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQVGYGTKLGAIGQ 60 Query: 72 -----SFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 F + + D AL GD +F + G I +R G F V + G+LV ++G Sbjct: 61 VMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNLVDSNGN 115 >gi|168703389|ref|ZP_02735666.1| hypothetical protein GobsU_27906 [Gemmata obscuriglobus UQM 2246] Length = 430 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 18/112 (16%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDIDQKISFVASGK 63 L + +N++N +T G++ ++ F +VV G + + + G Sbjct: 20 LDVIGNNLANINTTGYKDQRMVFRDVVYQTLSSGTSADAGTGGVNPTQVGFGVGVGSIGT 79 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 ++ G+ TG LD L+G +F + + + TR G F V G LV Sbjct: 80 QFTQ---GNLNPTGRSLDVGLQGRGFFVMRNVEDVAYTRAGAFGVDSAGYLV 128 >gi|254516995|ref|ZP_05129053.1| flagellar hook-associated protein FlgK [gamma proteobacterium NOR5-3] gi|219674500|gb|EED30868.1| flagellar hook-associated protein FlgK [gamma proteobacterium NOR5-3] Length = 639 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV 44 M NIG +A L+L++ +ST N++N +T GF +V+F+ + Sbjct: 1 MADVLNIGTSALLSLQRAISTTGHNIANVNTEGFSRQRVEFAAL 44 Searching..................................................done Results from round 2 >gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] gi|254040362|gb|ACT57158.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 307 bits (788), Expect = 7e-82, Method: Composition-based stats. Identities = 243/243 (100%), Positives = 243/243 (100%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA Sbjct: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK Sbjct: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN Sbjct: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN Sbjct: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 Query: 241 IAS 243 IAS Sbjct: 241 IAS 243 >gi|315121852|ref|YP_004062341.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495254|gb|ADR51853.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 243 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 182/243 (74%), Positives = 214/243 (88%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+SFNIGL+AQ+ALE+RLSTVADN+SN++T GFR IKVKFSEV+ +IKNDIDQKISFVA Sbjct: 1 MQSSFNIGLSAQIALEKRLSTVADNISNSNTSGFRAIKVKFSEVINSIKNDIDQKISFVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G EYLSK+ GS +TG ELDFALEGDAWF+L++PRGIILTRDGRFK+ +DG+L+S+SG+ Sbjct: 61 QGNEYLSKQNGSLTNTGGELDFALEGDAWFSLQTPRGIILTRDGRFKIREDGTLISSSGR 120 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLDM PI IP KDE F VGE+GEISQKGK IA MG YS D+S+GFVRRENSGI PN Sbjct: 121 YPVLDMEGAPIHIPHKDEAFEVGEEGEISQKGKKIAAMGFYSADLSKGFVRRENSGIFPN 180 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 IPP P+ D S +TVKRG++EDSNANSMYEMGQMIHLTQKFNSIT LID+++KS LEAI+N Sbjct: 181 IPPVPVLDPSDITVKRGYIEDSNANSMYEMGQMIHLTQKFNSITELIDDSDKSFLEAIKN 240 Query: 241 IAS 243 + S Sbjct: 241 LVS 243 >gi|13472570|ref|NP_104137.1| flagellar basal body rod protein FlgF [Mesorhizobium loti MAFF303099] gi|17366619|sp|Q98HE3|FLGF_RHILO RecName: Full=Flagellar basal-body rod protein flgF gi|14023316|dbj|BAB49923.1| flagellar basal-body rod protein; FlgF [Mesorhizobium loti MAFF303099] Length = 241 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 101/243 (41%), Positives = 152/243 (62%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ S + L+AQ+ALE+RL T+ADN++N +TVGFR VKF ++V + +SF + Sbjct: 1 MQDSLYVALSAQMALERRLDTIADNVANANTVGFRATGVKFEDMVSGTG---QKSVSFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 SGK YLS GS TG DFA++GDAWFA+++P G ++TRDGRF + ++G L+S G Sbjct: 58 SGKTYLSGAHGSLSETGNPFDFAIQGDAWFAIDTPAGTVMTRDGRFSMNENGELMSIEG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD PIQ+ ++ G G + Q +++ ++GLY+ D + FVR NSGI P Sbjct: 117 HPVLDAGGAPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGENFVRYGNSGIVPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D S V + +GF+E+SN N + EM ++I + + F + L+ + S EAI+ Sbjct: 177 RTPEPVTDRSDVGIAQGFVEESNVNPVLEMTRLIMVQRAFENTAALMRQTASSSDEAIKT 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|218461633|ref|ZP_03501724.1| flagellar basal body rod protein FlgF [Rhizobium etli Kim 5] Length = 244 Score = 268 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 110/242 (45%), Positives = 165/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWFAL++P G +LTRDGRF + D G LVS G Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIKDTGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q G+ + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLDTKAGEPAVGTDGVIYQTGRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESISSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|260466625|ref|ZP_05812813.1| flagellar basal-body rod protein FlgF [Mesorhizobium opportunistum WSM2075] gi|259029631|gb|EEW30919.1| flagellar basal-body rod protein FlgF [Mesorhizobium opportunistum WSM2075] Length = 240 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 100/243 (41%), Positives = 151/243 (62%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + L+AQ+ALE+RL T+ADN++N +TVGFR VKF +VV + +SF + Sbjct: 1 MRDSLYVALSAQMALERRLDTIADNVANANTVGFRATGVKFEDVVSGTG---QKSVSFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 SGK YLS G TG DFA++GDAWFA+++P G ++TRDGRF + ++G L+S G Sbjct: 58 SGKTYLSGAHGPLNETGNPFDFAIQGDAWFAIDTPAGPVMTRDGRFSMNENGELMSIEG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD PIQ+ ++ G G + Q +++ ++GLY+ D FVR NSGI P Sbjct: 117 HPVLDAGGAPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGVNFVRYGNSGIVPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D S V + +GF+E+SN N + EM ++I + + F + L+ + + S EAI+ Sbjct: 177 RTPEPVTDRSDVGIAQGFVEESNVNPVLEMTRLIMVQRAFENTAALMRQTDSSTDEAIKT 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|86356306|ref|YP_468198.1| flagellar basal body rod protein FlgF [Rhizobium etli CFN 42] gi|86280408|gb|ABC89471.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 244 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 107/242 (44%), Positives = 164/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWFAL++P G +LTRDGRF + + G LVS G Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIRETGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q + + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLDTKAGEPAVGSDGIIYQGDRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S +A++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESISSLMRDSEDSFKQAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|218673219|ref|ZP_03522888.1| flagellar basal body rod protein FlgF [Rhizobium etli GR56] Length = 244 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 165/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWF+L++P G +LTRDGRF + + G LVS G Sbjct: 61 QGNDYLNEQSGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTIKETGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q G+ + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLDTKAGEPAVGTDGVIYQAGRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESISSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|325291945|ref|YP_004277809.1| flagellar basal body rod protein FlgF [Agrobacterium sp. H13-3] gi|325059798|gb|ADY63489.1| flagellar basal body rod protein FlgF [Agrobacterium sp. H13-3] Length = 244 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 107/242 (44%), Positives = 163/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T++DNM+N +TVGFR +VKF E+V ND++ K++FV+ Sbjct: 1 MQSGLYVALSSQIALERRLTTISDNMANANTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YLS G+F TG DFA++GDAWFA+++P G IL+RDGRF + DG+L+S+SG Sbjct: 61 QGNDYLSTRQGAFEQTGNSFDFAIKGDAWFAMDTPDGQILSRDGRFTMRPDGALISSSG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ V G I Q ++AT+G++ D S+GF+R NSG+ P Sbjct: 120 YPVLDAGGGPIQLNANGGPITVSLDGAIRQNDNIVATLGVFQADFSKGFLRHPNSGVKPV 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 PPTP+ + V V +G+LE SN N + +M Q+I + + F SI++L+ + E + +AI+ Sbjct: 180 APPTPVVNNHEVGVVQGYLEQSNVNGISQMTQLIQVNRAFESISSLMRDTESTFGDAIKT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|327193031|gb|EGE59943.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512] Length = 244 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 165/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWF+L++P G +LTRDGRF + + G LVS G Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTLKETGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q G+ + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLDTKAGEPAVGTDGIIYQAGRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRSFESISSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|15887904|ref|NP_353585.1| flagellar basal body rod protein FlgF [Agrobacterium tumefaciens str. C58] gi|2459708|gb|AAB71784.1| FlgF [Agrobacterium tumefaciens] gi|15155496|gb|AAK86370.1| flagellar basal body rod protein [Agrobacterium tumefaciens str. C58] Length = 244 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T++DNM+N +TVGFR +VKF E+V ND++ K++FV+ Sbjct: 1 MQSGLYVALSSQIALERRLTTISDNMANVNTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YLS G+F TG DFA++GDAWFAL++P G ILTRDGRF + DG+L+S+SG Sbjct: 61 QGNDYLSTRQGAFEQTGNSFDFAIKGDAWFALDTPDGQILTRDGRFTMRPDGALISSSG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PI++ VG G I Q + A++G++ D S+GF+R NSG+ P Sbjct: 120 YPVLDAGGGPIRLNPNGGPITVGLDGAIRQNDTIAASLGIFQADFSKGFLRHPNSGVKPV 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ + V V +G+LE SN N + +M Q+I + + F SI++++ + E + E I+ Sbjct: 180 AQPVPVVNNHEVGVVQGYLEQSNVNGISQMTQLIQVNRAFESISSMMRDTESTFGEGIKT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|319781687|ref|YP_004141163.1| flagellar basal-body rod protein FlgF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167575|gb|ADV11113.1| flagellar basal-body rod protein FlgF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + L++Q+ALE+RL T+ADN++N T+GFR VKF +VV + +SF + Sbjct: 1 MRDSLYVALSSQIALERRLDTIADNVANASTIGFRATGVKFEDVVSGTG---QKSVSFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 GK YLS G+ TG DFA++GDAWFA+E+P G ++TRDGRF + ++G L+S G Sbjct: 58 PGKTYLSGAHGALSETGNPFDFAIQGDAWFAIETPVGTVMTRDGRFSMNENGELMSIEG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD PIQ+ ++ G G + Q +++ ++GLY+ D FVR NSGI P Sbjct: 117 HPVLDAGGSPIQLDPRNGPPKAGADGSLRQNDQLVGSIGLYNFDPGANFVRYGNSGIVPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D S + V +GFLE+SN N + E+ ++I + + F + L+ + + S EAI+ Sbjct: 177 RTPEPVTDRSDIGVAQGFLEESNVNPVLEITRLIMVQRAFENTAALMRQTDSSTDEAIKT 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|209547922|ref|YP_002279839.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533678|gb|ACI53613.1| flagellar basal body rod protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 107/242 (44%), Positives = 163/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL++ G TG LDFA++GDAWF+L++P G +LTRDGRF + D G LVS G Sbjct: 61 QGNDYLNESNGELQHTGNMLDFAIKGDAWFSLDTPAGRVLTRDGRFTLKDTGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q + + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLNSKGGEPAVGTDGIIYQGDRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F S+++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESVSSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|241203100|ref|YP_002974196.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856990|gb|ACS54657.1| flagellar basal-body rod protein FlgF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL++ G TG LDFA++GDAWFAL++P G +LTRDGRF + D G LVS G Sbjct: 61 QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGRVLTRDGRFTIKDTGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ K VG G I Q + +A++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLNTKGGEPAVGTDGIIYQADRQVASLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F S+++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESVSSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|190890357|ref|YP_001976899.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|190695636|gb|ACE89721.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] Length = 244 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 107/242 (44%), Positives = 165/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A KN ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEVKFDEMVAATKNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+++ G TG LDFA++GDAWF+L++P G +LTRDGRF + + G LVS G Sbjct: 61 QGNDYLNEQNGELQHTGNMLDFAVKGDAWFSLDTPAGRVLTRDGRFTLKETGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YP+LD PIQ+ K VG G I Q G+ + ++GL+ D+S+G++R ENSGI Sbjct: 120 YPILDAGGAPIQLDTKAGEPAVGTDGIIYQAGRQVGSLGLFEADISKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F SI++L+ ++E S EA++ Sbjct: 180 DQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRSFESISSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|116250476|ref|YP_766314.1| flagellar basal body rod protein FlgF [Rhizobium leguminosarum bv. viciae 3841] gi|115255124|emb|CAK06198.1| putative flagella associated protein [Rhizobium leguminosarum bv. viciae 3841] Length = 244 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 163/242 (67%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+T+ADNM+N +T GFR +VKF E+V A +N ++ K++FV+ Sbjct: 1 MQSGLYVSLSSQMALEKRLTTIADNMANVNTTGFRATEVKFDEMVAATRNKLNTKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL++ G TG LDFA++GDAWFAL++P G +LTRDGRF + D G LVS G Sbjct: 61 QGNDYLNEGNGELQHTGNMLDFAIKGDAWFALDTPAGQVLTRDGRFTIKDTGELVSIRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G+ I ++GL+ D+S+G++R ENSGI Sbjct: 120 YPVLDAGGAPIQLNTTGGEPAVGTDGIIYQGGRQIGSLGLFEADVSKGYLRYENSGIMTT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D V V++G+LE+SN N+M E+ Q+I + + F S+++L+ ++E S EA++ Sbjct: 180 EQPRAVVDRFNVGVEQGYLENSNVNAMREITQLIEVNRAFESVSSLMRDSEDSFKEAVQT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|227820852|ref|YP_002824822.1| flagellar basal body rod protein FlgF [Sinorhizobium fredii NGR234] gi|227339851|gb|ACP24069.1| Flagellar basal-body rod protein FlgF [Sinorhizobium fredii NGR234] Length = 241 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 110/242 (45%), Positives = 162/242 (66%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N +TVGFR+ +VKF +V+G K K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANANTVGFRSTEVKFDQVLGDTK---PSKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+EYL+ G+ TG+ LDFA++G+AWF +++P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEYLNTGNGALARTGSALDFAIKGNAWFNIDTPGGPALTRDGRFTLTETGELVTLKG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G +A +GLY D S GFVR +NS + P Sbjct: 117 YPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLYEADFSSGFVRYDNSAVMPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ EAI+ Sbjct: 177 AQPEPVVDRFDVGVMQGFLEESNVNAVQEMTQLIMVTRAFDNVTALMRDSEGSLEEAIKT 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|15964409|ref|NP_384762.1| flagellar basal body rod protein FlgF [Sinorhizobium meliloti 1021] gi|307311551|ref|ZP_07591192.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti BL225C] gi|17380373|sp|O54248|FLGF_RHIME RecName: Full=Flagellar basal-body rod protein flgF gi|15073586|emb|CAC45228.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021] gi|306899568|gb|EFN30197.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti BL225C] Length = 241 Score = 261 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 110/242 (45%), Positives = 165/242 (68%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N++TVGFR +VKF++V+G K K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTK---PTKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+E+LS + G+ TG+ LDFA++GDAWF++++P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEFLSTKTGALARTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G IA +GLY D S+GF+R +NS + P Sbjct: 117 YPVLDAGGAPIQLNGGAGEIAVGADGAIHQNGVQIALLGLYEADFSKGFMRYDNSSVMPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ +AI Sbjct: 177 AQPEPVVDRFDVGVMQGFLEESNVNAIQEMSQLIMITRAFDNVTALMRDSEGSLDKAIET 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|307318906|ref|ZP_07598337.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti AK83] gi|306895320|gb|EFN26075.1| flagellar basal-body rod protein FlgF [Sinorhizobium meliloti AK83] Length = 241 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N++TVGFR +VKF++V+G + K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTR---PTKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+E+LS + G+ TG+ LDFA++GDAWF++ +P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEFLSTKTGALARTGSALDFAIKGDAWFSIGTPGGPALTRDGRFTLTETGELVTIKG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G IA +GLY D S+GF+R +NS + P Sbjct: 117 YPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQIALLGLYEADFSKGFMRYDNSSVMPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ +AI Sbjct: 177 AQPEPVVDRFDVGVMQGFLEESNVNAIQEMSQLIMITRAFDNVTALMRDSEGSLDKAIET 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|150395479|ref|YP_001325946.1| flagellar basal body rod protein FlgF [Sinorhizobium medicae WSM419] gi|150026994|gb|ABR59111.1| flagellar basal body rod protein [Sinorhizobium medicae WSM419] Length = 241 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 165/242 (68%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N++TVGFR +VKF++V+G K K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTK---PTKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+E+LS + G+ TG+ LDFA++GDAWF++++P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEFLSTKTGALARTGSALDFAVKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G +A +GL+ D S+GF+R +NS + P Sbjct: 117 YPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEADFSKGFMRYDNSAVMPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ +AI Sbjct: 177 AQPEPVVDRFDVGVMQGFLEESNVNAVQEMSQLIMITRAFDNVTALMRDSEGSIDKAIET 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|222100099|ref|YP_002534667.1| Flagellar basal-body rod protein FlgG [Thermotoga neapolitana DSM 4359] gi|221572489|gb|ACM23301.1| Flagellar basal-body rod protein FlgG [Thermotoga neapolitana DSM 4359] Length = 268 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 31/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S A + +L T+A+N++N DT G++ ++ +F +++ + + Sbjct: 8 MMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATS 67 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + +G+F TG LD A+ GD +F ++ G I TRDG F Sbjct: 68 TLPTGLYVGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQIQLQDGRIAYTRDGSF 127 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKG--KVIATMGLY 161 KV +G +V+++G V I IP+ NV G +S Q G + + T+ L Sbjct: 128 KVDSEGRIVTSNGLLLV-----PEITIPENAVSINVSPDGIVSAELQDGTIQQLGTITLV 182 Query: 162 SVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ I P +D G +K+GFLE SN + + EM MI Sbjct: 183 RFVNPSGLKSIGDNLYIATPASGDPIEGVPGQDGFGA-IKQGFLEKSNVDVVREMVDMIT 241 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + A Sbjct: 242 AQRAYEFNSRVIQTADEMLRTATN 265 >gi|39998143|ref|NP_954094.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] gi|39985089|gb|AAR36444.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] Length = 242 Score = 251 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 8/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ +A +RL +++N++N +T GF+ ++ F ++ A + Sbjct: 1 MNSGIYSALSGNIAAMKRLDVLSNNLANVNTPGFKKDRMTFESLLQAAGKVPQAGTTDAP 60 Query: 61 SGKE---YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 E + GS TG D A++GD +F + +P G TR G FK+ G LV+A Sbjct: 61 VYSETAFFTDHSRGSVSQTGNTFDLAIDGDGFFVVNTPEGKAYTRQGNFKLDATGKLVTA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G PI I + +GEI G + T+ + + N+ Sbjct: 121 DGYEV---SGGGPIVI--NGSRVEINARGEILVDGSPVGTLEVVDFPKPYALQKNGNALF 175 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P P + + G V++G+LE SN +++ EM Q+I + F + + + +A Sbjct: 176 VPTDPQAVPQPVQGEPVRQGYLELSNVSAIQEMVQLIETQRFFEMCSKAVKAYDDMAGKA 235 Query: 238 IRNIA 242 + Sbjct: 236 ANEVG 240 >gi|297543694|ref|YP_003675996.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841469|gb|ADH59985.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 266 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 115/266 (43%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENIYGGQGR 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P G TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTDNPLDLALDGEGFFAVLGPDGTVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + DG+ LV+A G YPVLD + PI + +V G IS K + +AT+G+ Sbjct: 121 SADGNTLMLVTADG-YPVLDDSGNPIVFDSTGKDISVSPMGVISVKNPDGTTQEVATLGI 179 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ QG + N+ P P +D G V +GFLE SN + EM MI Sbjct: 180 YNFVNPQGLLSVGNNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|170288994|ref|YP_001739232.1| flagellar basal-body rod protein FlgG [Thermotoga sp. RQ2] gi|170176497|gb|ACB09549.1| flagellar basal-body rod protein FlgG [Thermotoga sp. RQ2] Length = 261 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 31/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S A + +L T+A+N++N DT G++ ++ +F +++ + + Sbjct: 1 MMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + +G+F TG LD A+ GD +F ++ G I TRDG F Sbjct: 61 SLPTGLYVGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQIQLQDGRIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKG--KVIATMGLY 161 K+ +G +V+++G V I IP+ NV G +S Q G + + T+ L Sbjct: 121 KIDSEGRIVTSNGLLLV-----PEITIPENAVSINVSPDGIVSAELQDGTIQELGTITLV 175 Query: 162 SVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ I P +D G +K+GFLE SN + + EM MI Sbjct: 176 RFVNPSGLKSIGDNLYIATPASGDPIEGVPGQDGFGA-IKQGFLEKSNVDVVREMVDMIT 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + A Sbjct: 235 AQRAYEFNSRVIQTADEMLRTATN 258 >gi|154253004|ref|YP_001413828.1| flagellar basal body rod protein [Parvibaculum lavamentivorans DS-1] gi|154156954|gb|ABS64171.1| flagellar basal body rod protein [Parvibaculum lavamentivorans DS-1] Length = 256 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 133/245 (54%), Gaps = 6/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 M+ + IGL+ Q+A+ + ++T+A+N++N +T +++ + F E + A ++ D I F Sbjct: 14 MENALLIGLSRQMAMSREMATIANNIANMNTTAYKSEAMLFEEFLAKDASEDSPDSTIRF 73 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V ++ + G+ +TG D A+ G+ +F +E+ +G++ TR+G F++ DG LV+++ Sbjct: 74 VQDVGQHRNLRDGALQTTGNPFDVAITGEGFFRVETGQGVLYTRNGNFQLDADGQLVTSN 133 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G P+L A PI + + + G IS + + + + + Q + NS +S Sbjct: 134 GD-PILTDAGTPITFARDEIGITIARDGTISSDRGLRGKLAIVTFENQQEMRKAGNSLLS 192 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P E+ + + +G LE SN N + EM MI +T+ + S LID+ ++ +AI Sbjct: 193 TAQEEVPAEN---IRLVQGALEGSNVNPILEMTNMIEVTRSYASAQKLIDQADQMRRKAI 249 Query: 239 RNIAS 243 +++ + Sbjct: 250 QDLGA 254 >gi|298507080|gb|ADI85803.1| flagellar basal body rod protein FlgF [Geobacter sulfurreducens KN400] Length = 242 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 8/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ +A +RL +++N++N +T GF+ ++ F ++ A + Sbjct: 1 MNSGIYSALSGNIAAMKRLDVLSNNLANVNTPGFKKDRMTFESLLQAAGKVPQAGTTDAP 60 Query: 61 SGKE---YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 E + GS TG D A++GD +F + +P G TR G FK+ G LV+A Sbjct: 61 VYSETAFFTDHSRGSVSQTGNTFDLAIDGDGFFVVNTPEGKAYTRQGNFKLDATGKLVTA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G PI I + +GEI G + T+ + + N+ Sbjct: 121 DGYEV---SGGGPIVI--NGSRVEINARGEILVDGSPVGTLEVVDFPKPYALQKNGNALF 175 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P P + + G V++G LE SN +++ EM Q+I + F + I + +A Sbjct: 176 VPTDPQAVPQPVQGEPVRQGHLEYSNVSAIQEMVQLIETQRFFEMCSKAIKAYDDMAGKA 235 Query: 238 IRNIA 242 + Sbjct: 236 ANEVG 240 >gi|289577407|ref|YP_003476034.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter italicus Ab9] gi|289527120|gb|ADD01472.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter italicus Ab9] Length = 266 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENIYGGQGR 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P G TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTDNPLDLALDGEGFFAVLGPDGTVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + DG+ LV+A G YPVLD PI + ++ +V G IS K + +AT+G+ Sbjct: 121 SADGNTLMLVTADG-YPVLDDRGNPIVFDRTEKDISVSPLGVISVKNANGTTREVATLGI 179 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ QG + N+ P P +D G V +GFLE SN + EM MI Sbjct: 180 YNFVNPQGLLSVGNNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|222147565|ref|YP_002548522.1| flagellar basal body rod protein FlgF [Agrobacterium vitis S4] gi|221734553|gb|ACM35516.1| flagellar basal body rod protein [Agrobacterium vitis S4] Length = 244 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 104/242 (42%), Positives = 159/242 (65%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q AL++RL+T+ADNM+N +TVGFR +VKF EVV ND + KI+FV+ Sbjct: 1 MQSGMYVSLSSQRALDKRLTTIADNMANVNTVGFRGTEVKFDEVVSRTGNDQNAKIAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YL+ + G + TG LDFA++GDAWF++++P G LTRDGRF +T G LVS G Sbjct: 61 QGNDYLNTQSGEMLQTGGTLDFAVKGDAWFSIDTPAGPALTRDGRFTMTSTGQLVSVRG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD PIQ+ +VG G I+Q G+ I+ +GL++ D+S+G++R ENSG+ Sbjct: 120 YSVLDAGGGPIQLDPNGGEPHVGADGTINQNGRQISQIGLFTADISKGYLRTENSGVITT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + D + + V +G++E SN N + +M Q+I +++ F SI+ + + E SM E I+ Sbjct: 180 DRPQAVVDDATIGVMQGYVEQSNVNGISQMTQLIQVSRAFESISASMSQTENSMSETIKT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|15644290|ref|NP_229342.1| flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8] gi|148270380|ref|YP_001244840.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1] gi|281412686|ref|YP_003346765.1| flagellar basal-body rod protein FlgG [Thermotoga naphthophila RKU-10] gi|4982109|gb|AAD36609.1|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8] gi|147735924|gb|ABQ47264.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1] gi|281373789|gb|ADA67351.1| flagellar basal-body rod protein FlgG [Thermotoga naphthophila RKU-10] Length = 261 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 31/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S A + +L T+A+N++N DT G++ ++ +F +++ + + Sbjct: 1 MMISLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVRAEFQDLLYQYVKNAGTPTAATS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + +G+F TG LD A+ GD +F ++ G I TRDG F Sbjct: 61 SLPTGLYVGHGVRTAATTRIFTLGNFEQTGNALDLAIAGDGFFQIQLQDGRIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKG--KVIATMGLY 161 K+ +G +V+++G V I IP+ NV G +S Q G + + T+ L Sbjct: 121 KMDSEGRIVTSNGLLLV-----PEITIPENAVSINVSPDGIVSAELQDGTIQELGTITLV 175 Query: 162 SVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ I P +D G +K+GFLE SN + + EM MI Sbjct: 176 RFVNPSGLKSIGDNLYIATPASGDPIEGVPGQDGFGA-IKQGFLEKSNVDVVREMVDMIT 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + A Sbjct: 235 AQRAYEFNSRVIQTADEMLRTATN 258 >gi|222084859|ref|YP_002543388.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722307|gb|ACM25463.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 244 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 166/242 (68%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L++Q+ALE+RL+TVADNM+N +T GFR +VKF++V+ +N ++ K++FV+ Sbjct: 1 MQSGIYVSLSSQMALERRLTTVADNMANVNTTGFRGTEVKFNQVLSNTENKLNAKVAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +YLS G +TG LDFA++G+AWF L +P G++LTRDGRF +TD G+LVSA G Sbjct: 61 QGNDYLSTSNGELQNTGNLLDFAVKGEAWFGLNTPAGLVLTRDGRFTMTDSGALVSARG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ V G I+Q K + +GLY+ D+S+GF+R NSG+ P Sbjct: 120 YPVLDPGGAPIQLDPTGGAPTVSSNGTITQNDKQVGQIGLYTSDVSKGFLRYNNSGVLPT 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D S + V +G+LE+SN N + EM ++I +++ F++IT+L + +E ++ EAI+ Sbjct: 180 DTPQPVIDRSNIGVAQGYLENSNVNGLREMTELIEVSRAFDNITSLTNSSESTLSEAIKT 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|110632662|ref|YP_672870.1| flagellar basal body rod protein FlgF [Mesorhizobium sp. BNC1] gi|110283646|gb|ABG61705.1| flagellar basal body rod protein [Chelativorans sp. BNC1] Length = 239 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 146/243 (60%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N TVGFR + FS+V+ + + +SFV+ Sbjct: 1 MQTGLYVALSSQMALERRLATLADNVANAGTVGFRAGGITFSDVMSGLSEE---AVSFVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G + G TG+ DFA++GDAWFA+E+P G ++TRDGRF + + G LV+ G Sbjct: 58 TGSNFYDTRAGGLRETGSPFDFAVQGDAWFAVETPAGPVMTRDGRFTMRETGELVTLEG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD P+ + + G G + Q G++I +GL+S R NSG P+ Sbjct: 117 HAVLDAGGAPLVLDPQAGPPEAGADGILRQNGQLIGAIGLFSFTPGPNATRFGNSGFLPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ D V + +GFLEDSN N + EM ++I + + F +T L+ +++ SM +AI+ Sbjct: 177 TRPQPVVDQPDVGIAQGFLEDSNVNPVNEMMRLIQVQRTFEQVTALMRDSDTSMKDAIQA 236 Query: 241 IAS 243 + S Sbjct: 237 MGS 239 >gi|288962677|ref|YP_003452971.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288914943|dbj|BAI76427.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 243 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 2/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ IGL+ Q+AL ++L VA+N++N +T GFR + F + A +I+F Sbjct: 1 MENQLYIGLSRQMALRRQLDVVANNVANMNTAGFRGERTLFEAAMEAGGRKPTDRIAFTI 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 Y G+ TG D AL+GD + A+++P G+ TRDGR + DG+LV +G Sbjct: 61 DRATYTDLRPGALTETGNPYDVALDGDGFLAVQTPDGVRYTRDGRLRRDADGTLVGPNG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PI IP + ++G G +S G V++ + ++ D Q + + P Sbjct: 120 YPVLDDGRRPIVIPSESSKISIGSDGLLSADGTVVSRIAVFRFDTPQALKQTGDLLFDPP 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + G E SN + E+G+M+ LT+ + ++T ++D+ + + AI Sbjct: 180 AGLEPRPA-PDTRLVEGKTERSNVQGIVEIGRMMDLTRDYQAVTRMVDDGQDLLRSAINR 238 Query: 241 IA 242 + Sbjct: 239 LG 240 >gi|158422269|ref|YP_001523561.1| flagellar basal body rod protein FlgF [Azorhizobium caulinodans ORS 571] gi|158329158|dbj|BAF86643.1| flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] Length = 240 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 133/242 (54%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ Q+A E+R++T+A+N++N +T G+R ++KFS ++ + I F + Sbjct: 1 MSNGLYVALSGQMATEKRMATIANNVANMNTPGYRAEEIKFSSIMA---EQGAKDIKFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G+ Y S+ G T + D A++G WF++++P G+ TRDGRF VT DG LVS + Sbjct: 58 TGESYTSRRAGPITYTNSPYDVAVQGKGWFSVKTPDGVAYTRDGRFNVTADGMLVSVN-N 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD + I + G I Q + T+GL+ + + R +NS + P+ Sbjct: 117 YPVLDQGGTAVMIQPNQGELKITADGTIIQGTNPVGTLGLFEIPLDAKLKRYDNSAVIPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 TP+ D + +++G++E SN + + EM ++I + + F S I + E S ++IR Sbjct: 177 KAATPVTDYNSNAIRQGYVEGSNVDPVMEMTRLIMVQRAFESAAQAISQQETSGTDSIRA 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|114706758|ref|ZP_01439658.1| flagellar basal body rod protein [Fulvimarina pelagi HTCC2506] gi|114537706|gb|EAU40830.1| flagellar basal body rod protein [Fulvimarina pelagi HTCC2506] Length = 240 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 146/243 (60%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+TS + L+ Q+A+E+RL T+A N++N TVGFR +V+F E++ D ++FV+ Sbjct: 1 METSLPVALSGQIAMEKRLETLAHNIANARTVGFRAEEVRFEELLSHTAPD---PVAFVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ YLS + G+ TG LD A+ G+A+FA++ GI+ TRDGR +V+ +G + + +G+ Sbjct: 58 KGETYLSNKSGALTQTGNPLDLAVRGEAFFAIQGDNGIVYTRDGRMQVSPEGMVQTLTGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P+LD +Q+ +G G I Q G+ +A +GL+ + R + SG+ + Sbjct: 118 -PLLDAGGQALQVDPAGGPLTIGGNGMIHQNGQEVAAVGLFRIPQGANVTRADTSGVVSD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +P TP+ + V +G++E++N N + EM ++I L + F S ++ N++S+ EAI+ Sbjct: 177 VPATPVVEFLTDNVVQGYVEEANVNPVQEMTRLIALQRAFESAANVVQTNDRSLSEAIKA 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|148266117|ref|YP_001232823.1| flagellar basal body rod protein [Geobacter uraniireducens Rf4] gi|146399617|gb|ABQ28250.1| flagellar basal body rod protein [Geobacter uraniireducens Rf4] Length = 244 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 10/247 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV- 59 M + L+ LA QRL +++N++N +T GF+ +++F V+ KN + Sbjct: 1 MNSGLYAALSGSLAAMQRLEVISNNLANANTPGFKGDRLQFESVLANTKNPTLTAGNLTD 60 Query: 60 ----ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + K + + G TG LD AL+GD +F + +P+G TR G F+ G LV Sbjct: 61 LPVFSGEKFFTNYSAGPLKQTGNTLDVALDGDGFFVVNTPQGKAYTRQGSFQRDASGKLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G Y V PI I ++ KG + G + T+ + + N Sbjct: 121 TGDG-YEVQGRG--PITI--TGGRVDINGKGGVLVDGVSVGTLEVVDFPKPYALEKIGNG 175 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P P + ++ +VK+GFLEDSN N + EM +MI ++ F+S +I + Sbjct: 176 LFIPADPQVAPQAVTTASVKQGFLEDSNVNVVTEMARMIETSRYFDSCQKVIRSYDDVAA 235 Query: 236 EAIRNIA 242 +A + Sbjct: 236 KAANELG 242 >gi|326389274|ref|ZP_08210842.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus JW 200] gi|325994637|gb|EGD53061.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus JW 200] Length = 266 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P + TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVLGPDDKVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + DG+ LV+A G YPVLD + PI ++ +V G IS K + +AT+G+ Sbjct: 121 SADGNTLMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGI 179 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ QG + ++ P P +D G V +GFLE SN + EM MI Sbjct: 180 YNFVNPQGLLSVGSNLYEPTEASGQPGTRDDFQGRMGKVMQGFLETSNVQVVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|159045791|ref|YP_001534585.1| flagellar basal body rod protein FlgF [Dinoroseobacter shibae DFL 12] gi|157913551|gb|ABV94984.1| flagellar basal-body rod protein FlgF [Dinoroseobacter shibae DFL 12] Length = 238 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ Q AL++ ++ +A+N++N T G+R + FSE V A + IS Sbjct: 1 MDATQYTALSRQNALKREMTVIANNIANISTTGYRAEGLVFSEYVQATGHG-QASISMTD 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 SG + + G TG D A+EGD +F + +P G+ LTR G F+ +G LV+ G Sbjct: 60 SGAKITNYSQGMLRQTGGSFDMAIEGDGFFQVAAPEGVRLTRAGAFEPDANGLLVTPDG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y +LD P+ IP V G +S G+ + +GL + R + PN Sbjct: 119 YQLLDAGGAPVFIPPDARSIAVAADGTLSADGRPLTNIGLVVPEDPLLMERAPGASFIPN 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E+ +V +GF+E SN N + E+ +MI + +++ S + ID+ + + I+ Sbjct: 179 GGVLPAEN---ASVHQGFIEGSNVNPIVEVARMIEVQRRYESAKSFIDKEDDRIKTVIQT 235 Query: 241 IA 242 + Sbjct: 236 LG 237 >gi|90418400|ref|ZP_01226312.1| flagellar basal-body rod protein FlgF [Aurantimonas manganoxydans SI85-9A1] gi|90338072|gb|EAS51723.1| flagellar basal-body rod protein FlgF [Aurantimonas manganoxydans SI85-9A1] Length = 241 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 138/243 (56%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+T+ + L+AQLA+ +RL T+A N++N+ T GFR ++KF E++ + +SF + Sbjct: 1 METALPVALSAQLAMSKRLDTIAHNVANSRTTGFRAEEIKFEELISLSA---PEPVSFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G Y S G TG LD A++GDA+FA + P G + TRDGR ++ G + + SG Sbjct: 58 EGTTYFSTRSGEMTQTGNPLDMAVDGDAFFAFQGPNGPVYTRDGRMRINAQGMVETISG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YP++D+ P+Q+ + G I+Q G +GL+ + R ENSG+ P+ Sbjct: 117 YPLVDVGGAPLQVDPNAGPVTITRDGMITQNGAQAGAVGLFQLPAGAKLTRFENSGLIPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+ + + V V +GF E SN N M E+ ++I L + F + + L+ +E+++ +A++ Sbjct: 177 RAAVPIVEFADVGVIQGFQEGSNVNPMLEISRLISLQRAFENASNLVQSSERTLDDAVKT 236 Query: 241 IAS 243 + + Sbjct: 237 LGT 239 >gi|328545467|ref|YP_004305576.1| flagellar basal body rod protein [polymorphum gilvum SL003B-26A1] gi|326415208|gb|ADZ72271.1| Flagellar basal body rod protein [Polymorphum gilvum SL003B-26A1] Length = 241 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 149/242 (61%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+AQ++L RL TVA N++N +T G+R ++KF+EV+ D +SF Sbjct: 1 MQSALYVALSAQVSLSNRLETVARNVANMNTAGYRADEIKFAEVLSKAGAD---PVSFAT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G+ Y+S++ G T LD A+EGD W A+ + G++ TRDGR K+ +DG L + +G Sbjct: 58 AGERYISRQHGGLTRTDNPLDVAVEGDGWLAVRTGAGVVYTRDGRMKMDNDGVLRTLNG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD +PI + ++ + +G G ++Q V +GL+ +D R +NSG+ P+ Sbjct: 117 YDVLDAGGLPILLDREGGMPVIGRDGTVTQGEDVAGALGLFRIDERAKLTRFDNSGVIPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 IP P+++ + + +G++E +N N + E+ ++I +T+ F T++I+ +++S +AIR+ Sbjct: 177 IPAEPIQEFTSSGMVQGYVEGANINPIRELTKLIMITRAFEGATSMIEASDRSQEQAIRD 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|167038473|ref|YP_001666051.1| hypothetical protein Teth39_2092 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116868|ref|YP_004187027.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857307|gb|ABY95715.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929959|gb|ADV80644.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 266 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P + TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVLGPDDKVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + DG+ LV+A G YPVLD + PI ++ +V G IS K + +AT+G+ Sbjct: 121 SADGNTLMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGI 179 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ QG + ++ P P +D G V +GFLE SN + EM MI Sbjct: 180 YNFVNPQGLLSVGSNLYEPTEASGQPSTRDDFQGRMGKVMQGFLETSNVQVVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|316932824|ref|YP_004107806.1| flagellar basal-body rod protein FlgF [Rhodopseudomonas palustris DX-1] gi|315600538|gb|ADU43073.1| flagellar basal-body rod protein FlgF [Rhodopseudomonas palustris DX-1] Length = 253 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 126/253 (49%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 M+ + +GL+ Q+ LE+++ VA+N++N T GF+ + F E + ++ D++ Sbjct: 1 MENALLVGLSRQVVLERQMDVVANNLANISTNGFKAERSMFQEFLNTGAHEDNFPRPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV Y GS T LD A++G + +++P+G TRDG K+ G LV Sbjct: 61 VSFVQDRATYHDLSTGSLQQTKNPLDIAIDGPGFLVVQTPQGERFTRDGSLKINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-KGKVI-----ATMGLYSVDMSQGF 169 ++SG +PVL PI I D+ ++ G +S +G I + + S D Q Sbjct: 121 NSSG-FPVLGTGG-PIVIQPTDKELSISPDGRVSVLEGTSIIDSLRGKLRVVSFDRPQTL 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 +++ + +P +++G++E SN NS+ EM +MI +T+ + I+ ++ + Sbjct: 179 MKQGGNLFAPTSD--QGTPDIKSMLRQGYVEKSNVNSVLEMTRMIDVTRTYTQISAMLQQ 236 Query: 230 NEKSMLEAIRNIA 242 + AI + Sbjct: 237 QSELRKAAIEKLG 249 >gi|289548898|ref|YP_003473886.1| flagellar basal-body rod protein FlgG [Thermocrinis albus DSM 14484] gi|289182515|gb|ADC89759.1| flagellar basal-body rod protein FlgG [Thermocrinis albus DSM 14484] Length = 262 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 106/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + L ++ NM+N +TVGF+ ++ F +++ D S Sbjct: 1 MFRALWTSASGMSAQQTNLDVISHNMANVNTVGFKKMRPTFQDLLYQTVRDPGAPTSPTT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V Y G+ TG +LD A++GD +F + P G TR+G+F Sbjct: 61 RAPSGFQIGLGVYISDTYGIFTQGNLFQTGNQLDLAIQGDGFFKVVLPDGTIAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ DG +V+ G YP+ I +P ++G G +S + I + L Sbjct: 121 RLDADGRIVNPDG-YPL----DPEITVPADAISVSIGPDGTVSVLRQGATTVEEIGRIEL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G R N+ + P+ D G T+ +G+LE SN N + EM +I Sbjct: 176 AKFVNPAGLRRIGNNLFIQTDASGEPIVDNPGNQGLGTLLQGYLESSNVNIVEEMVNLII 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + F + I + + + Sbjct: 236 AQRAFEFNSKGIMAADDMLGQVAN 259 >gi|289523332|ref|ZP_06440186.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503024|gb|EFD24188.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 262 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---S 57 M + G +A + L +++N++N +T G++ I+ +F +++ I + + S Sbjct: 1 MIRALWSGATGMIAQQSNLDVISNNLANVNTTGYKKIRAEFEDLIYQIGREPGAPVEPDS 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + G+ T D A+EGD +F + P G TRDG + Sbjct: 61 MIPTGVQVGLGTRLIGTSRIMSPGNLQVTDNPFDIAIEGDGFFQVTLPDGTMAYTRDGTW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 V DG +V+++G I IP+ V GE+ + I + L Sbjct: 121 HVDGDGQIVTSNGYLL-----EPQIAIPEDTVEITVSPTGEVYARQAGDVEPDEIGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 QG + I P E+ G T+++G LE SN + EM MI Sbjct: 176 ARFVNPQGLRAMGKNLFLETPASGFPILGQPGEEGFG-TLRQGALEMSNVQVVEEMVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ +L+ N+ Sbjct: 235 VSQRAYEANSKTIQTADE-LLQIANNL 260 >gi|302390533|ref|YP_003826354.1| flagellar basal-body rod protein FlgG [Thermosediminibacter oceani DSM 16646] gi|302201161|gb|ADL08731.1| flagellar basal-body rod protein FlgG [Thermosediminibacter oceani DSM 16646] Length = 268 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 114/269 (42%), Gaps = 31/269 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----------AIK 49 M + + LA + + +++N++N +T G++ +V+F +++ Sbjct: 1 MMRALWSASSGMLAQQLNVDVISNNLANVNTTGYKKSRVEFKDLLYETLRRPDVFQPGQG 60 Query: 50 NDIDQKIS-FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 N + ++ V G+ TG D A+EG+ +F +E P G TRDG FK Sbjct: 61 NPVGLQVGHGVRPASTTRFFTEGNLQQTGNTFDLAIEGEGFFVVERPDGSRAFTRDGSFK 120 Query: 108 VTDDG---SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV--IATMG 159 V+ DG LV++ G Y VLD I IP+ N+ G I+ G + I T+ Sbjct: 121 VSIDGDDRYLVTSEGYY-VLDTDEDYISIPEDLTDINISANGTITGRDADGNIEEIGTIA 179 Query: 160 LYSVDMSQGFVRRENSGISPNIPP-------TPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 L +G + N+ P E G T+ +GFLE SN + EM Sbjct: 180 LARFLNPEGLLAVGNNLFEQTAASGEYQLKEDPNEPGFG-TILQGFLEMSNVQVVDEMVN 238 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + T I ++ + +A N+ Sbjct: 239 LIVAQRAYEINTKAIQTADEMLGQA-NNL 266 >gi|163758009|ref|ZP_02165097.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] gi|162284298|gb|EDQ34581.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] Length = 241 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 99/243 (40%), Positives = 154/243 (63%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ S + L++Q+ALE+R++T+ADN++N +T GFR ++KF+EV+ +SFV Sbjct: 1 MQGSLYVALSSQIALERRMNTLADNVANANTTGFRATEIKFNEVLADTGV---ANVSFVN 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G++YLS E G +TG++LDFA+ G+AWF +E+P G +LT+DGRF +T G LV+ G Sbjct: 58 QGEDYLSTENGGLRTTGSQLDFAIRGEAWFMVETPTGNMLTKDGRFTITQAGELVNIDG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ + G G ++Q G I +GLY D+SQG+ R+ + G+ PN Sbjct: 117 YPVLDPGGAPIQLNPAGDPPKAGRDGGLTQDGVRIGAIGLYQADLSQGYYRQGSLGVVPN 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +PP + D +G + +G++EDSN N + EM +I +++ F + + + E EAIR Sbjct: 177 VPPEAVVDTAGTGLLQGYIEDSNVNPILEMTNLIMVSRAFENTSAMTRATEDVFKEAIRT 236 Query: 241 IAS 243 + S Sbjct: 237 LGS 239 >gi|15606190|ref|NP_213567.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] gi|2983377|gb|AAC06963.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] Length = 262 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + L ++ NM+N +TVG++ ++ F +++ + S Sbjct: 1 MFRALWTSASGMTAQQTNLDVISHNMANVNTVGYKKMRATFQDLLYQTVEEPGAPTSPTT 60 Query: 61 -------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Y G+ T +LD A++GD +F + P G TR+G+F Sbjct: 61 RSPSGFQIGLGTYVSDTYGIFTQGNLTKTDNQLDIAIQGDGFFKIVLPDGTIAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G +V++ G YP+ I IP ++ G +S + + + + L Sbjct: 121 RLDSEGRIVNSDG-YPL----DPEITIPADAISVSIAADGTVSVLRQGATEVEEVGRIEL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G R N+ I P+ D G T+ +G+LE SN N + EM +I Sbjct: 176 AKFVNPAGLRRIGNNLYIQTTASGEPIIDNPGNQGLGTLLQGYLESSNVNIVEEMVNLII 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + T I ++ + +A Sbjct: 236 AQRAYEFNTKGIQAADEMLSQAAN 259 >gi|332800001|ref|YP_004461500.1| flagellar basal-body rod protein FlgF [Tepidanaerobacter sp. Re1] gi|332697736|gb|AEE92193.1| flagellar basal-body rod protein FlgF [Tepidanaerobacter sp. Re1] Length = 255 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 119/261 (45%), Gaps = 25/261 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M G + L+ R +++N++N +T GF+ + F + + D I+ Sbjct: 1 MIRGLYTGASGMLSEMSRTDVISNNLANVNTSGFKKDRAIFRALPEMNIHRFDDPITVGL 60 Query: 58 ---------------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTR 102 V + G+ T LD AL G+ +F +++P GI TR Sbjct: 61 DRVIDPRPFIGMLGTGVMLDEINTDFSQGAIKVTSNPLDIALRGEGFFEVQTPEGIRYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 DG F + DG +V+ G Y VL P+ +PQ+ ++ + ++GE++ G+ + + + + Sbjct: 121 DGSFTIDRDGYIVTKDGYY-VLGENG-PMLLPQEGDVV-ISQQGEVTVSGQFVDRLEIVN 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 V++ ++ + P P + V +G LE SN N++ EM +I + + + Sbjct: 178 FADQGQVVKQGSNLYNSQAPTVPTD----AEVIQGALEGSNTNTISEMVDLITAFRAYEA 233 Query: 223 ITTLIDENEKSMLEAIRNIAS 243 +I +++++ A+ +IAS Sbjct: 234 SQKVIQTHDETLDRAVNDIAS 254 >gi|58426792|gb|AAW75829.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas oryzae pv. oryzae KACC10331] Length = 341 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + R+S +++N++NT+T GF+ + F +++ S Sbjct: 81 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 140 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + GS TG LD + G +F ++ P G TRDG F Sbjct: 141 QLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTF 200 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ G LV+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 201 QINAQGQLVTNSG-YPLQPG----IQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTL 255 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P TP + G TV +G LE SN N++ E+ MI Sbjct: 256 TDFINPSGLQSKGENLFVETTASGPAQNGTPGLNGLGNTV-QGALEGSNVNTVEELVSMI 314 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + N+ Sbjct: 315 ETQRAYEMNAKAISTTDAMLGYLNNNV 341 >gi|146295641|ref|YP_001179412.1| hypothetical protein Csac_0595 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409217|gb|ABP66221.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 267 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 28/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +++N++N +T F+ K +F +++ + D Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVIAGDGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV- 108 Q V S G+ T LD A++G+ +F + +P G TRDG FKV Sbjct: 61 PVSLQIGHGVTISAITKSFSEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVS 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS---QKGKVIA---TMG 159 +G LV++ G YPVL I +P+ + E G I+ +G++ + Sbjct: 121 NVEGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDAEGQIQDSGFKIK 179 Query: 160 LYSVDMSQGFVRRENSGIS-PNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 + QG + + + P+ + + +GFLE SN + EM ++I Sbjct: 180 IVRFINPQGLLAEGKNLYNVSAASGDPVSEEEIEGPKSRILQGFLEMSNVQVVDEMVKLI 239 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 IAQRAYEINSKAIQTADD-MLSMANNL 265 >gi|167038784|ref|YP_001661769.1| hypothetical protein Teth514_0111 [Thermoanaerobacter sp. X514] gi|300913631|ref|ZP_07130948.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307723354|ref|YP_003903105.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] gi|166853024|gb|ABY91433.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter sp. X514] gi|300890316|gb|EFK85461.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307580415|gb|ADN53814.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] Length = 266 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P G + TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVLGPDGKVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + +G+ LV+A G YPVLD + PI ++ +V G IS K + +AT+G+ Sbjct: 121 SPNGNNLMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGI 179 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ +QG + ++ P P +D G V +GFLE SN + EM MI Sbjct: 180 YNFVNTQGLLSVGSNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNIQIVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|307266107|ref|ZP_07547652.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter wiegelii Rt8.B1] gi|306918889|gb|EFN49118.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter wiegelii Rt8.B1] Length = 266 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSVATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P + TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFTEGSLQQTENPLDLALDGEGFFAVLGPDDKVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + DG+ LV+A G YPVLD + PI ++ +V G IS K + +AT+G+ Sbjct: 121 SADGNTLMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGI 179 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ QG + ++ P P +D G V +GFLE SN + EM MI Sbjct: 180 YNFVNPQGLLSVGSNLYEPTEASGQPGTRDDFQGRMGKVMQGFLETSNVQVVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|296134368|ref|YP_003641615.1| flagellar basal-body rod protein FlgF [Thermincola sp. JR] gi|296032946|gb|ADG83714.1| flagellar basal-body rod protein FlgF [Thermincola potens JR] Length = 251 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 22/256 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGAIKNDIDQK-- 55 M A LA R A+N++N +T G++ F E++ D Sbjct: 1 MIRGLYTSAAGMLAESARNDVAANNLANVNTTGYKKDAAVFKSFPEMLIQRMEKPDNPAQ 60 Query: 56 ---------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + V + G T LD A+ GD +F +++P G TR+G F Sbjct: 61 LKPEKVGWLGTGVIVDEVITIHTQGQLKETTNPLDMAISGDGYFVIQTPAGERYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 + +G LV++ G Y + + I + V ++G IS G+VI T+ + S + Sbjct: 121 TLDSEGYLVTSEGNYVLGQRGRIRI----GNNDIVVDKQGNISANGQVIDTLRIVSFNDP 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 V++ +S + P+ +G + + LE SN N + EM +I + + + + + Sbjct: 177 NRLVKQGDSLFA---GGQPVAGFNG-QIMQKALETSNVNPVQEMVDLITIMRAYEANQKM 232 Query: 227 IDENEKSMLEAIRNIA 242 I +++++ +AI ++A Sbjct: 233 IQAHDQTLGQAINDVA 248 >gi|256751339|ref|ZP_05492218.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus CCSD1] gi|256749721|gb|EEU62746.1| flagellar basal-body rod protein FlgG [Thermoanaerobacter ethanolicus CCSD1] Length = 266 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSAASGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P G + TRDG FK+ Sbjct: 61 PVNMQVGVGVRLSAIVKDFTGGSLQQTDNPLDLALDGEGFFAVLGPDGKVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + +G+ LV+A G YPVLD + PI ++ +V G IS K + +AT+G+ Sbjct: 121 SPNGNNLMLVTADG-YPVLDDSGNPIVFDSTEKDISVSPMGVISVKNPDGTTQEVATLGI 179 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ +QG + ++ P P +D G V +GFLE SN + EM MI Sbjct: 180 YNFVNTQGLLSVGSNLYEPTEASGQPGTRDDFEGRMGKVMQGFLETSNIQIVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|153011530|ref|YP_001372744.1| flagellar basal body rod protein FlgF [Ochrobactrum anthropi ATCC 49188] gi|151563418|gb|ABS16915.1| flagellar basal body rod protein [Ochrobactrum anthropi ATCC 49188] Length = 243 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 134/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSNKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK ++ E G I T LD A++GD W ++ +P+G I TRDGR + G LVS +G Sbjct: 58 TAGKSFIRTEAGPMIKTDNPLDVAVKGDVWMSVSTPQGQIYTRDGRMNMLPTGDLVSITG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +PVLD+ PI + + G I Q G I +GLY++ SG+ P Sbjct: 118 -HPVLDVGGAPIVLNPGGGAPKISSDGAIYQNGAQIGAIGLYTIPADADLTYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 NKPAQPVADDNSVGVVQGMIEGSNVDAMTEMTRLISVSRAFEQVNNLLSQQESTVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|118589943|ref|ZP_01547347.1| flagellar basal body rod protein [Stappia aggregata IAM 12614] gi|118437440|gb|EAV44077.1| flagellar basal body rod protein [Stappia aggregata IAM 12614] Length = 243 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 144/245 (58%), Gaps = 6/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+++ + L+AQ+AL RL TVA N++N +T G+R +VKF+E+V D K+SF Sbjct: 1 MESALYVALSAQVALSNRLETVARNVANMNTAGYRADEVKFAELVSKAGQD---KVSFST 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 G++Y+S++ GS T LD A+EG+AWFA+ G + TRDGR ++ +DG+L + +G Sbjct: 58 GGEKYISRQYGSLNKTDNPLDLAVEGEAWFAIRDANGNLSYTRDGRLQIGNDGTLRTLTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-VIATMGLYSVDMSQGFVRRENSGIS 178 + +L PI + + + GEISQ +I +GL+ + R ENS + Sbjct: 118 Q-QILGAGGQPISLDPDAGTPLITQSGEISQNDVGIIGQVGLFLIPDDAQLTRAENSAVI 176 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P+ P P++ V++G++E SN N + EM +MI +++ F S T +ID + +S +AI Sbjct: 177 PDKPVIPVQTYDTNGVRQGYVEGSNINPVREMTKMIMISRAFESATKMIDTSNESQEKAI 236 Query: 239 RNIAS 243 R + + Sbjct: 237 RELGA 241 >gi|295688785|ref|YP_003592478.1| flagellar basal-body rod protein FlgF [Caulobacter segnis ATCC 21756] gi|295430688|gb|ADG09860.1| flagellar basal-body rod protein FlgF [Caulobacter segnis ATCC 21756] Length = 245 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 4/244 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK--VKFSEVVGAIKNDIDQKISF 58 M + +GL+ QL L + L VA+N++N +T GF+ V+ + A D + F Sbjct: 1 MDNALYVGLSRQLTLRRELDVVANNIANANTTGFKVEDLMVRTEQSKPAKTLDGSAPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V G+ TG + D A+EG +F +++ G TRDGRF +G LV+ S Sbjct: 61 VLDSGVARDFTQGAMTKTGGDFDLAIEGKGFFRVQTANGDRYTRDGRFTTNPEGQLVTQS 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G +PVLD PI I ++G+ G ++Q + + + D + ++ + Sbjct: 121 G-HPVLDEGGGPINIDPTLGQVSIGKDGIVTQGAVRVGKIAVVRPDNLAS-MAKDGDNLY 178 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N L+ V +G LE SN S+ E+ ++I + + + S+ ++D + A+ Sbjct: 179 RNTTNATLQPAPDAVVHQGMLEASNVQSVLEITKLIQVQRAYESVAKMMDNTSELSRTAV 238 Query: 239 RNIA 242 + Sbjct: 239 ERLG 242 >gi|312794499|ref|YP_004027422.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876700|ref|ZP_07736680.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor lactoaceticus 6A] gi|311796540|gb|EFR12889.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor lactoaceticus 6A] gi|312181639|gb|ADQ41809.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor kristjanssonii 177R1B] Length = 267 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 28/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +++N++N +T F+ K +F +++ + D Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV- 108 Q V S G+ T LD A++G+ +F + +P G TRDG FKV Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVS 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS---QKGKVIA---TMG 159 +G LV++ G YPVL I +P+ + E G I+ Q G++ + Sbjct: 121 NVEGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQDSGLKIK 179 Query: 160 LYSVDMSQGFVRRENSGIS-PNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 + QG + + + P+ + + +GFLE SN + EM ++I Sbjct: 180 IVRFINPQGLLAEGKNLYNVSAASGDPVSEEEIEGQKSRILQGFLEMSNVQVVDEMVKLI 239 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 IAQRAYEINSKAIQTADD-MLSMANNL 265 >gi|2916790|emb|CAA11956.1| flagellar basal-body rod protein [Sinorhizobium meliloti] Length = 229 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 105/230 (45%), Positives = 156/230 (67%), Gaps = 4/230 (1%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 +ALE+RL+T+ADN++N++TVGFR +VKF++V+G K K+S+V+ G+E+LS + G+ Sbjct: 1 MALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTK---PTKVSYVSEGEEFLSTKTGA 57 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 TG+ LDFA++GDAWF++++P G LTRDGRF +T+ G LV+ G YPVLD PIQ Sbjct: 58 LARTGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKG-YPVLDAGGAPIQ 116 Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + VG G I Q G IA +GLY D S+GF+R +NS P P P+ D V Sbjct: 117 LNGGAGEIAVGADGAIHQNGVQIALLGLYEADFSKGFMRYDNSSDMPAAQPEPVVDRFDV 176 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V +GFLE+SN N++ EM Q+I +T+ F+++T L+ ++E S+ +AI + Sbjct: 177 GVMQGFLEESNVNAIQEMSQLIMITRAFDNVTALMRDSEGSLDKAIETLG 226 >gi|254478136|ref|ZP_05091519.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035998|gb|EEB76689.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] Length = 251 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 118/253 (46%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + LA + + +A+N++N +TVG++ V S G D Sbjct: 1 MIRGLYTAASGMLAQTKVMDVLANNLANVNTVGYKKDVVVLSSFPNFETIREGGDNVPPD 60 Query: 54 QKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 +K+ + G + E G + T +LDFA++G+ +F + +P+G TRDG F + Sbjct: 61 RKVGRIEYGVLIDTFHTVFEEGPLMETTGKLDFAIDGNGFFVVNTPQGERYTRDGAFTMN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG LV+ G Y VL PI++ Q D +V E G I G+++ + + D Sbjct: 121 ADGYLVTKDG-YLVLGENG-PIRLSQGD--VSVDENGNIINNGQLVDRLRIVDFDNYDAL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ ++ + + +K+GFLE SN NS+ EM MI + + + S ++ Sbjct: 177 KKQGDNLFYLDNAVNTQIIPATGRIKQGFLEGSNVNSVKEMVNMISVMRNYESNQKVVTA 236 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 237 FDETLGKAVNEVG 249 >gi|288958674|ref|YP_003449015.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288910982|dbj|BAI72471.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 240 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + ++ Q+AL+++L ++N++N +T G++ ++ F+E + K + +K+SFV Sbjct: 1 MENSIYVAMSRQMALQRQLDVTSNNIANMNTTGYKNQRMLFTEFL--EKPGLHEKVSFVQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ TG LD AL G +F +++ G TR G F++ D LV A G Sbjct: 59 DRAVVRDLSNGAMTQTGNPLDLALTGQGYFTVDTASGPRYTRAGNFRMNDQRQLVDA-GG 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVL PI +P V G ++ + +A + + + Q N + Sbjct: 118 LPVLSNNGQPITLPAGTSDVKVSGDGTVATELGPVAKLNIVTFKNEQLMTEVGNGLYVTD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P + V +G LE SN + EM QMI + +++ S +ID + + I+ Sbjct: 178 EQPQPAP--AETKVAQGLLEGSNVKPVVEMTQMIDIQRQYMSAQKMIDNEHERIRTMIQR 235 Query: 241 IA 242 + Sbjct: 236 LG 237 >gi|239834448|ref|ZP_04682776.1| flagellar basal body rod protein FlgF [Ochrobactrum intermedium LMG 3301] gi|239822511|gb|EEQ94080.1| flagellar basal body rod protein FlgF [Ochrobactrum intermedium LMG 3301] Length = 243 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KFS +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFSSIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK ++ E G I T LD A++GD W ++ +P+G I TRDGR + G LV+ +G Sbjct: 58 TAGKSFIRTEAGPMIKTDNPLDVAVKGDVWMSVSTPQGQIYTRDGRMNMLPTGDLVTVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +PVLD+ PI + + G I Q G I +GL+++ SG+ P Sbjct: 118 -HPVLDVGGAPIVLNPAGGAPKISSDGAIYQNGAQIGAIGLFTIPADAELTYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 NKPAQPVADDNSVGVVQGMIEGSNVDAMTEMTRLISVSRAFEQVNNLLAQQETTVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 ILGS 240 >gi|312126442|ref|YP_003991316.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor hydrothermalis 108] gi|311776461|gb|ADQ05947.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor hydrothermalis 108] Length = 267 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 28/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +++N++N +T F+ K +F +++ + D Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV- 108 Q V S G+ T LD A++G+ +F + +P G TRDG FKV Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVS 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS---QKGKVIA---TMG 159 +G LV++ G YPVL I +P+ + E G I+ Q G++ + Sbjct: 121 NVEGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQDSGFKIK 179 Query: 160 LYSVDMSQGFVRRENSGIS-PNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 + QG + + + P+ + + +GFLE SN + EM ++I Sbjct: 180 IVRFINPQGLLAEGKNLYNVSATSGDPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLI 239 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 IAQRAYEINSKAIQTADD-MLSMANNL 265 >gi|302872712|ref|YP_003841348.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor obsidiansis OB47] gi|302575571|gb|ADL43362.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor obsidiansis OB47] Length = 267 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 28/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +++N++N +T F+ K +F +++ + D Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV- 108 Q V S G+ T LD A++G+ +F + +P G TRDG FKV Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVS 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS---QKGKVIA---TMG 159 +G LV++ G YPVL I +P+ + E G I+ Q+G++ + Sbjct: 121 NVEGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDQEGQIQDSGLKIK 179 Query: 160 LYSVDMSQGFVRRENSGIS-PNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 + QG + + + P+ + + +GFLE SN + EM ++I Sbjct: 180 IVRFINPQGLLAEGKNLYNVSAASGEPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLI 239 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 IAQRAYEINSKAIQTADD-MLSMANNL 265 >gi|222530298|ref|YP_002574180.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor bescii DSM 6725] gi|222457145|gb|ACM61407.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor bescii DSM 6725] Length = 267 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 28/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +++N++N +T F+ K +F +++ + D Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV- 108 Q V S G+ T LD A++G+ +F + +P G TRDG FKV Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVS 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS---QKGKVIA---TMG 159 +G LV++ G YPVL I +P+ + E G I+ Q G++ + Sbjct: 121 NVEGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDETGRITYKDQDGQIQDSGFKIK 179 Query: 160 LYSVDMSQGFVRRENSGIS-PNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 + QG + + + P+ + + +GFLE SN + EM ++I Sbjct: 180 IVRFINPQGLLAEGKNLYNVSAASGDPMSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLI 239 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 IAQRAYEINSKAIQTADD-MLSMANNL 265 >gi|312136039|ref|YP_004003377.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor owensensis OL] gi|311776090|gb|ADQ05577.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor owensensis OL] Length = 267 Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 28/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +++N++N +T F+ K +F +++ + D Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV- 108 Q V S G+ T LD A++G+ +F + +P G TRDG FKV Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVS 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS---QKGKVIA---TMG 159 +G LV++ G YPVL I +P+ + E G I+ Q+G+V + Sbjct: 121 NVEGQIKLVTSDG-YPVLAEGDTEIVLPETAISSITIDEMGRITYKDQEGQVQDSGLKIK 179 Query: 160 LYSVDMSQGFVRRENSGIS-PNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 + QG + + + P+ + + +GFLE SN + EM ++I Sbjct: 180 IVRFINPQGLLAEGKNLYNVSAASGEPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLI 239 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 IAQRAYEINSKAIQTADD-MLSIANNL 265 >gi|20806699|ref|NP_621870.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|20515153|gb|AAM23474.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] Length = 266 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGR 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V G+ TG LD AL+G +FA+ P + TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFSEGNLYQTGNPLDLALDGPGFFAVLGPDDKVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + DG+ LV+A G YPVLD ++ PI V G I K + +AT+G+ Sbjct: 121 SPDGNTFMLVTADG-YPVLDDSNNPIVFDGNVNDITVSPLGVIQVKNPDGTTQEVATLGI 179 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ QG + N+ + P +D G V +GFLE SN + EM MI Sbjct: 180 YNFTNPQGLLSVGNNLYEATEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|254478074|ref|ZP_05091457.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035936|gb|EEB76627.1| conserved domain protein [Carboxydibrachium pacificum DSM 12653] Length = 266 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +A+N++N +T F+ + +F +++ + Sbjct: 1 MMRALWSAATGMTAQQLNVDVIANNLANVNTTAFKRDRAEFKDLIYQTLQRENVYGGQGR 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V G+ TG LD AL+G +FA+ P + TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFSEGNLYQTGNPLDLALDGPGFFAVLGPDDKVYYTRDGSFKL 120 Query: 109 TDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + DG+ LV+A G YPVLD ++ PI V G I K + +AT+G+ Sbjct: 121 SPDGNTLMLVTADG-YPVLDDSNNPIVFDGNVNDITVSPLGVIQVKNPDGTTQEVATLGI 179 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ QG + N+ + P +D G V +GFLE SN + EM MI Sbjct: 180 YNFTNPQGLLSVGNNLYEATEASGQPGTRDDFEGRMGKVMQGFLETSNVQVVKEMVDMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 240 AQRAYEINSKAIQAADE-MLGIANNL 264 >gi|222053731|ref|YP_002536093.1| flagellar basal-body rod protein FlgF [Geobacter sp. FRC-32] gi|221563020|gb|ACM18992.1| flagellar basal-body rod protein FlgF [Geobacter sp. FRC-32] Length = 244 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 10/247 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + L+ LA +RL +++N++N +T GF+ +++F V+ + K+ S Sbjct: 1 MNSGLYAALSGNLAAMRRLDVISNNLANANTAGFKGDRLQFESVLASSKSQSQAAASPND 60 Query: 58 --FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S + G TG LD AL+GD +F + +P+G TR G F++ G LV Sbjct: 61 SPVFSSEIFFTDYSPGPLKQTGNTLDVALDGDGFFVVNTPQGRAYTRQGNFRMDSAGRLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G PI + ++ KG I G T+ + + Sbjct: 121 TSEGYEV---QGGGPITV--NGGRVDIDAKGAILVDGTPAGTLDIVDFQKPYALQKLGEG 175 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P P +++ TV++G LE SN N + EM +MI T+ F S ++ + Sbjct: 176 LFIPANPQETPVNVTTTTVQQGALEGSNVNVVAEMVRMIETTRYFESCQKVVRSYDDITG 235 Query: 236 EAIRNIA 242 +A ++ Sbjct: 236 KAANDLG 242 >gi|254473360|ref|ZP_05086757.1| flagellar basal body rod protein [Pseudovibrio sp. JE062] gi|211957476|gb|EEA92679.1| flagellar basal body rod protein [Pseudovibrio sp. JE062] Length = 241 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 133/239 (55%), Gaps = 4/239 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + L+ Q+ALE+RL TVA N++N +T G+R +VKF +V D ++F ++G+ Sbjct: 5 SLYVSLSGQMALERRLETVARNVANMETAGYRADEVKFDSLVKRPGKD---PVTFASTGE 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y+S++ G+ TG LD A+EG W +++ G+ TRDGRF++ DG L S G PV Sbjct: 62 NYISRQAGAIKQTGNSLDVAIEGSGWLGIQTGNGVAYTRDGRFQIGVDGILRSIEGN-PV 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD + PI + + + G I Q+G+ + +GL+S+ R NSG+ P+ Sbjct: 121 LDSGNAPIILDPLGGPPEISKDGTIYQEGRQVGVLGLFSIPEDAKLSRTGNSGVIPDAIA 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P+ D + +GF+E +N N + E+ ++I +T+ F S +++ E + IR + Sbjct: 181 EPVLDFAENGFAQGFVEGANINPISEITKLITITRAFESTNSMMQSVESIRQQTIRKLG 239 >gi|20806698|ref|NP_621869.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|20515152|gb|AAM23473.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] Length = 251 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 118/253 (46%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + LA + + +A+N++N +TVG++ V S G D Sbjct: 1 MIRGLYTAASGMLAQTKVMDVLANNLANANTVGYKKDIVVLSSFPNLETIREGGDNVPPD 60 Query: 54 QKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 +K+ + G + E G + T +LDFA++G+ +F + +P+G TRDG F + Sbjct: 61 RKVGRIEYGVLIDTFHTVFEEGPLMETTGKLDFAIDGNGFFVVNTPQGERYTRDGAFTMN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG LV+ G Y VL PI++ Q D +V E G I G+++ + + D Sbjct: 121 ADGYLVTKDG-YIVLGENG-PIRLSQGD--VSVDENGNIINNGQLVDRLRIVDFDNYDAL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ ++ + + +K+GFLE SN NS+ EM MI + + + S ++ Sbjct: 177 RKQGDNLFYLDNAVNTQIIPATGRIKQGFLEGSNVNSVKEMVNMISVMRNYESNQKVVTA 236 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 237 FDETLGKAVNEVG 249 >gi|163782718|ref|ZP_02177714.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] gi|159881839|gb|EDP75347.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] Length = 262 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 106/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + L ++ NM+N +T+GF+ ++ F +++ + S Sbjct: 1 MFRALWTSASGMTAQQTNLDVISHNMANVNTIGFKKMRPTFQDLIYQTVREPGAPTSPTT 60 Query: 61 -------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Y G+ TG LD A++GD +F + P G TR+G+F Sbjct: 61 RSPSGFQIGLGTYIADTYGIFTQGNINQTGNTLDLAIQGDGFFKVVLPDGTIAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ DG +V++ G YP+ I IP + G ++ + + + L Sbjct: 121 RLDRDGRIVNSDG-YPL----DPEISIPPDALSIGIAADGTVTVLRQGATSVEEVGRIEL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G R N+ I + PL D G T+ +G+LE SN N + EM +I Sbjct: 176 AKFVNPAGLRRVGNNLYIQTDASGEPLIDNPGNQGIGTLLQGYLESSNVNIVEEMVNLII 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + T I ++ + +A Sbjct: 236 AQRAYEFNTKGITAADEMLSQAAN 259 >gi|170744541|ref|YP_001773196.1| flagellar basal body rod protein [Methylobacterium sp. 4-46] gi|168198815|gb|ACA20762.1| flagellar basal body rod protein [Methylobacterium sp. 4-46] Length = 242 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 134/243 (55%), Gaps = 5/243 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ + L+AQ+AL++RL TVA+N++N TVG+R + KF V + ++F + Sbjct: 1 MQNGLYVSLSAQVALQKRLDTVANNIANLATVGYRAEETKFEAVFDKARTG---PVAFAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 +G Y+S+ G I T LD A++GDAW +++ P G + TRDGR + G L S SG Sbjct: 58 TGDTYISRLAGPTIKTDAPLDVAVQGDAWLSVQGPGGAPVYTRDGRMTMDASGQLRSVSG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + P+LD PI + +G G I Q G ++ ++G++++D R ++ Sbjct: 118 Q-PILDPGGAPILLDPNAGPPTIGRDGSIQQNGSLVGSLGVFTLDAKSRITRAGPGAVTS 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N+P P++D + + V +G LE +N N + EM ++I + + F++ E + S+ AIR Sbjct: 177 NLPARPVQDFTKIGVVQGHLEGANVNPILEMTKLIAIQRAFDNAVATASEADSSLQSAIR 236 Query: 240 NIA 242 + Sbjct: 237 TLG 239 >gi|312621332|ref|YP_004022945.1| flagellar basal-body rod protein flgg [Caldicellulosiruptor kronotskyensis 2002] gi|312201799|gb|ADQ45126.1| flagellar basal-body rod protein FlgG [Caldicellulosiruptor kronotskyensis 2002] Length = 267 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 28/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + + +++N++N +T F+ K +F +++ + D Sbjct: 1 MMRALYSAALGMKAQQTNVDIISNNLANVNTTAFKKDKAEFKDLLYETLSRADVVAGDGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV- 108 Q V S G+ T LD A++G+ +F + +P G TRDG FKV Sbjct: 61 PVSLQIGHGVTISAITKSFAEGNLERTENPLDLAIQGEGFFVVSTPNGPRYTRDGSFKVS 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS---QKGKVIA---TMG 159 +G LV++ G YPVL I +P+ + E G I+ +G+V + Sbjct: 121 NVEGQIKLVTSDG-YPVLAEGDTEIILPETAISSITIDETGRITYKDAEGQVQDSGLKIK 179 Query: 160 LYSVDMSQGFVRRENSGIS-PNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 + QG + + + P+ + + +GFLE SN + EM ++I Sbjct: 180 IVRFINPQGLLAEGKNLYNVSAASGDPVSEEEMEGQKSRILQGFLEMSNVQVVDEMVKLI 239 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 IAQRAYEINSKAIQTADD-MLSMANNL 265 >gi|297618421|ref|YP_003703580.1| flagellar basal-body rod protein FlgF [Syntrophothermus lipocalidus DSM 12680] gi|297146258|gb|ADI03015.1| flagellar basal-body rod protein FlgF [Syntrophothermus lipocalidus DSM 12680] Length = 256 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 119/261 (45%), Gaps = 24/261 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + L + +A+N++N T GF+ F +++ + Sbjct: 1 MIRGLYTACSGMLLQLAKQDVIANNLANASTPGFKKDLAVCTAFPDMMINRLGEVKVVAG 60 Query: 52 ---------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTR 102 I + + A G+ T LD A+ GD +F +++P+G TR Sbjct: 61 KEEPIPPVAIGRLGTGAAIQTISTDFSAGAVQKTDNPLDLAIAGDGFFVIQTPQGEKYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 +G F++ DDG L +A G YPVL + PI I D+ F + EKG + +V+ T+ + Sbjct: 121 NGSFRIGDDGILTTAQG-YPVLGRSG-PINI--GDQTFTIDEKGNLLVGDEVLDTLRVVR 176 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ + + N TP+ D+ V +G+LE SN ++ EM ++I + + + + Sbjct: 177 FENNSELVKTGDD-LFTNPSGTPV-DVEDGQVIQGYLELSNVVAVKEMVELISVLRAYEA 234 Query: 223 ITTLIDENEKSMLEAIRNIAS 243 ++ +++++ AI + + Sbjct: 235 NQKVVQAHDQTLDAAINRVGA 255 >gi|323704841|ref|ZP_08116418.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium xylanolyticum LX-11] gi|323535767|gb|EGB25541.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium xylanolyticum LX-11] Length = 266 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + + +++N++N +T F+ + +F +++ D Sbjct: 1 MIRALWSAASGMNAQQLNVDVISNNLANVNTTAFKRDRAEFQDLIYQTLQTEDVNGGQGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P G TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFSEGSLQETDNPLDVALDGEGFFAVLGPDGNTYYTRDGSFKL 120 Query: 109 TDD---GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + D +L +A G YPVLD PI + ++ G IS K + +AT+G+ Sbjct: 121 SVDQNTATLTTADG-YPVLDDGGNPITFDSTQKDISISPLGVISVKNSDGTQQDVATLGI 179 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ G + + ++ + P +D G V++GFLE SN + EM MI Sbjct: 180 YNFQNPDGLLDKGDNLYEATAASGDPGTRDDFQGRMGNVRQGFLETSNVQVVNEMVNMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 AQRAYELNSKAIQAADD-MLSIANNL 264 >gi|319898631|ref|YP_004158724.1| flagellar basal-body rod protein flgF [Bartonella clarridgeiae 73] gi|319402595|emb|CBI76140.1| Flagellar basal-body rod protein flgF [Bartonella clarridgeiae 73] Length = 244 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 135/241 (56%), Gaps = 1/241 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q+ LE+R+ T+A NM+N +T GFR +KF ++ + ++ ++ F + Sbjct: 1 MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFRAGGMKFDTLISPVAHEQGDRVFFTS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S + GS + TG LD A+ GD++F++++ G + TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTDRGSLVQTGNALDIAVTGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ I + G I Q ++ +GL+ NS + P+ Sbjct: 120 LPFLDEGGAPIQLDPVGGIPRIVSDGSIYQDNSLVGKIGLFQFQPGTQLRYGPNSSVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 E SG V +G++E SN N + EM ++I +++ F + +++ + E+ ++I+ Sbjct: 180 RAVLQSEAGSGDGVMQGYIESSNVNGVIEMTRLIEVSRAFERVESMLRQQEEMRSKSIQV 239 Query: 241 I 241 + Sbjct: 240 L 240 >gi|319409192|emb|CBI82836.1| Flagellar basal-body rod protein flgF [Bartonella schoenbuchensis R1] Length = 244 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 133/242 (54%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q++L +R+ T+A NM+N +T GFR +KF +V + + ++ F + Sbjct: 1 MQNPIYVGVSGQISLARRMETIAQNMANVNTPGFRAGGMKFDTLVSPVAREQRDQVVFAS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S + G+ + TG LD A+ GD++F++++ G + TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTDRGALVKTGNALDVAVGGDSYFSMQASFGPVYTRDGRMIMTPEGGLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ + G I QK ++ +GL+ N+ + P+ Sbjct: 120 LPFLDDGGAPIQLNPAGGTPRISADGSIYQKDVLVGKIGLFQFQKGTQLRYGPNASVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E G V +G++E SN N + EM ++I +++ F + ++ + E+ ++I+ Sbjct: 180 RPAMQSEGGIGDKVVQGYIESSNVNGVSEMTRLIEVSRAFERVEAMLRQQEEMRSKSIQI 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|83594174|ref|YP_427926.1| hypothetical protein Rru_A2842 [Rhodospirillum rubrum ATCC 11170] gi|83577088|gb|ABC23639.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 245 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 113/240 (47%), Gaps = 6/240 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 M+ + I L+ Q AL ++L V++N++N +T G++ + FSE + ++ + +K++ Sbjct: 1 MENTSYIALSRQTALWRQLDVVSNNLANMNTNGYQAEQTLFSEYLMNTRDSHFRLPEKLA 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + Y G TG LD A+ G+ +F +E G TR GRF + +G +V+A Sbjct: 61 YTQDAGTYRDLTAGPLEHTGNPLDLAINGEGYFEVEDGAGPAYTRGGRFTLDAEGKVVTA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G+ P++ A P+ I + + G +S + + + L S + Q R Sbjct: 121 DGR-PLMTDAGTPLVIAPNEGEVTISATGTVSTENGPVGKLRLVSFEDEQKLRRIGGGLF 179 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + ++ +++G +E SN N + EM +MI + + + + LI+ L A Sbjct: 180 --DSGDQQANPITEPRIEQGMIEKSNVNPVVEMTRMIQVQRSYEAANKLIESENDRQLNA 237 >gi|188997557|ref|YP_001931808.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium sp. YO3AOP1] gi|188932624|gb|ACD67254.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium sp. YO3AOP1] Length = 266 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 103/270 (38%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L ++ N++N +TVGF+ + F +++ D Sbjct: 1 MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDVRDPGVLSSTQN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V GS + T LD A++G+ +F +E P G TR G F Sbjct: 61 RVPAGIQIGLGVKVSDVAKMFSQGSLMKTDNPLDVAIQGEGFFKIEMPDGSEAFTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATM 158 ++ ++G +V+ G ++ I P+ ++ G++ Q + + + Sbjct: 121 QIDNEGYIVNPEGYRL---SPNIQISAPETVLNISISPNGKVIVVRNSGGQQTTEEVGNI 177 Query: 159 GLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 LY G + P+E + +GFLE SN N + EM + Sbjct: 178 KLYKFINPAGLKAIGGNLFKYTEASGQPIEGDPNTDAFGKLTQGFLEMSNVNIVEEMVNL 237 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 I + + + I ++ ML+ + + S Sbjct: 238 IVAQRAYEVNSKGIITADE-MLKTVSTLKS 266 >gi|94987182|ref|YP_595115.1| flagellar basal body rod protein [Lawsonia intracellularis PHE/MN1-00] gi|94731431|emb|CAJ54794.1| Flagellar basal body rod protein [Lawsonia intracellularis PHE/MN1-00] Length = 264 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 22/262 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 MQ + GL A L+ E R++ +A+N++N +T G++ K+ F + + +D Sbjct: 1 MQQAKFSGLFAALSAEHRMNFIANNLANVNTAGYKQDKLAFKDTMIQFAHDQIREPIATV 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRD 103 + V GS TG LDFA+ G + +F ++SP+G LTR+ Sbjct: 61 RSKPLFPEPNNAARVRIAVSNTDFAQGSMQFTGNPLDFAITGENGFFRIQSPQGNYLTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F + G LV+ G +PVL PI IP+ + ++ G I + T+ S+ Sbjct: 121 GSFVLDATGQLVTKQG-WPVLGDGG-PITIPEGTKKISITPDGRIFADDAEVGTIQFVSL 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D + + + P +E + G + +GFLE SN N + EM +MI + ++F Sbjct: 179 DDVKKLEKVGANLYRPKEGLEIIEGNANETGAIINQGFLESSNVNVVEEMVKMIEVNRQF 238 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 ++ ++ ++ EA + Sbjct: 239 DAYQKVMQTSDSLDREAYSKVG 260 >gi|16126302|ref|NP_420866.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus CB15] gi|221235079|ref|YP_002517515.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus NA1000] gi|13637950|sp|Q06171|FLGF_CAUCR RecName: Full=Flagellar basal-body rod protein flgF gi|13423542|gb|AAK24034.1| flagellar basal-body rod protein FlgF [Caulobacter crescentus CB15] gi|220964251|gb|ACL95607.1| flagellar basal-body rod protein flgF [Caulobacter crescentus NA1000] Length = 245 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 4/244 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK--VKFSEVVGAIKNDIDQKISF 58 M + +GL+ Q+ L + L VA+N++N +T GF+ V+ + A D + F Sbjct: 1 MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + G TG + D A+ G +F +++ G TRDGRF +G LV+ + Sbjct: 61 VMDTGVARNFTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQA 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G PVLD I I + VG+ G +SQ + +GL D F + ++ + Sbjct: 121 GA-PVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDN-LY 178 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N T + ++ + +G LE SN + E+ ++I + + + S+ ++D + A+ Sbjct: 179 RNTTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMDNTAELSRSAV 238 Query: 239 RNIA 242 + Sbjct: 239 ERLG 242 >gi|91976162|ref|YP_568821.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisB5] gi|91682618|gb|ABE38920.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5] Length = 253 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 MQ + +GL+ Q+ LE+++ VA+N++N +T GF+ + F E + ++ D++ Sbjct: 1 MQNTLLVGLSRQVVLERQMDVVANNLANINTNGFKAERSVFQEFLNTGAHEDNFQAQDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV Y G T LD A++G A+ +++P+G TRDG+ + G LV Sbjct: 61 VSFVQDRAAYHDFASGPMEETKNPLDVAIDGSAFLVVQTPQGERYTRDGKLSINPQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI------ATMGLYSVDMSQGF 169 +ASG YPVL + PI D+ N+ G +S V + + S Q Sbjct: 121 NASG-YPVLGNSG-PIVFQPTDKSINISSDGNVSVLEGVATIDSLRGKLRMVSFARPQSL 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ + + V++G++E SN NS+ EM +MI +T+ + S++ L+ + Sbjct: 179 EKQGGNLFAATSDR--GAPDPKAIVRQGYVEKSNVNSVLEMTRMIEVTRSYQSVSALLQQ 236 Query: 230 NEKSMLEAIRNIA 242 AI +A Sbjct: 237 ESDLQKAAIERLA 249 >gi|119384846|ref|YP_915902.1| flagellar basal body rod protein FlgF [Paracoccus denitrificans PD1222] gi|119374613|gb|ABL70206.1| flagellar basal body rod protein [Paracoccus denitrificans PD1222] Length = 238 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 5/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + + TVA+N++N +T GFR V FSE + + + + ++ Sbjct: 1 MDNAIYAALTRQSGLMREMHTVANNIANANTTGFRREGVVFSEYMVPL-DRRGETLAMAN 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G T + D A++G+ + +++P+G LTR G F +G LV+ G Sbjct: 60 GRGRMIDLGPGGMTQTNGQFDLAIDGEGFLMVQTPQGNRLTRAGAFMTNAEGELVNPDG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + +LD + PI IP +G G IS G + +G+++ + P Sbjct: 119 HQLLDDGAAPIVIPAGVGSIGIGADGTISADGNPVGRVGVFASPDPARLRHEAGTLFDPG 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 PLE G +++GFLEDSN + + E+ +MI + + + + +D+ ++ + + I + Sbjct: 179 GAVDPLE---GAVLRQGFLEDSNVDPVQEIARMIEVQRAYQLGQSFLDQEDQRIRQTITS 235 Query: 241 I 241 + Sbjct: 236 L 236 >gi|121534936|ref|ZP_01666755.1| flagellar basal-body rod protein FlgG [Thermosinus carboxydivorans Nor1] gi|121306535|gb|EAX47458.1| flagellar basal-body rod protein FlgG [Thermosinus carboxydivorans Nor1] Length = 262 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 98/265 (36%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + +A + + +++N++N +T GF+ + F +++ Sbjct: 1 MMRALWTAGSGMVAQQANVDVISNNLANVNTTGFKKSRTDFQDLMYQTIRQAGAATGADT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G+F TG LD A+EGD +F + P G TRDG F Sbjct: 61 QLPTGIQIGHGVRQVATQKIYTQGNFQQTGNPLDLAIEGDGFFQITLPDGTLAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K G +V++ G YP+ I IP+ + G ++ + + + + Sbjct: 121 KKDAQGRIVTSEG-YPL----EPQIIIPENATELLISADGRVTAKIPGQTDPQDLGQIQI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E + + P D +G V++ +LE SN + EM MI Sbjct: 176 VRFINPAGLDSIGRNLLKETAASGAPVVLNPGTDGAGTLVQQ-YLEMSNVQVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + I + + + Sbjct: 235 VAQRAYEINAKAITTADDMLGQVAN 259 >gi|237755437|ref|ZP_04584062.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium yellowstonense SS-5] gi|237692401|gb|EEP61384.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium yellowstonense SS-5] Length = 266 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 102/270 (37%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L ++ N++N +TVGF+ + F +++ D Sbjct: 1 MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDVRDPGVLSSTQN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V GS + T LD A++G+ +F +E P G TR G F Sbjct: 61 RVPAGIQIGLGVKVSDVAKMFSQGSLMKTDNPLDVAIQGEGFFKIEMPDGSEAFTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATM 158 ++ ++G +V+ G ++ I P+ ++ G++ Q + + + Sbjct: 121 QLDNEGYIVNPEGYRL---SPNIQISAPETVLNISISPNGKVIVVRNSGGQQTTEEVGNI 177 Query: 159 GLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 LY G + P+E + +GFLE SN N + EM + Sbjct: 178 KLYKFINPAGLKAIGGNLFKYTEASGQPIEGDPNTDAFGKLTQGFLEMSNVNIVEEMVNL 237 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 I + + + I ++ ML + + S Sbjct: 238 IVAQRAYEVNSKGIITADE-MLRTVSTLKS 266 >gi|304317903|ref|YP_003853048.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779405|gb|ADL69964.1| flagellar basal-body rod protein FlgG [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 266 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 111/266 (41%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + + +++N++N +T F+ + +F +++ D Sbjct: 1 MIRALWSAASGMNAQQLNVDVISNNLANVNTTSFKRDRAEFQDLMYQTLQTEDVNAGQGK 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 Q V GS T LD AL+G+ +FA+ P G TRDG FK+ Sbjct: 61 PVNMQVGVGVRPSAIVKDFSEGSLQETDNPLDVALDGEGFFAVLGPDGNTYYTRDGSFKL 120 Query: 109 TDD---GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGL 160 + D +L +A G YPVLD PI + ++ G IS K + IAT+G+ Sbjct: 121 SVDQNTATLTTADG-YPVLDDGGNPITFDSTQKDISISPLGVISVKNPDGTQQDIATLGI 179 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPL--EDLSG--VTVKRGFLEDSNANSMYEMGQMIH 215 Y+ G + + N+ + P +D G V +GFLE SN + EM MI Sbjct: 180 YNFQNPNGLLNKGNNLYEATAASGAPGTRDDFQGKMGNVVQGFLETSNVQVVNEMVNMIA 239 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + ML N+ Sbjct: 240 AQRAYELNSKAIQAADD-MLSIANNL 264 >gi|256830177|ref|YP_003158905.1| flagellar basal-body rod protein FlgF [Desulfomicrobium baculatum DSM 4028] gi|256579353|gb|ACU90489.1| flagellar basal-body rod protein FlgF [Desulfomicrobium baculatum DSM 4028] Length = 258 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 25/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ S + L + RL ++A+N++N +T GF++ K+ F + +D+ + + Sbjct: 1 MQDSSYSAVFGALTQQHRLDSIANNLANVNTTGFKSEKLAFRDTFRRYAHDMVDPNTTLT 60 Query: 61 S---------------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 + + G STG LD A+ GD +F +++P G +TR G Sbjct: 61 DKVPWPQANLLAQPRISEAVIDMSQGPMKSTGNPLDLAIAGDGFFRVQTPEGEFMTRQGV 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 + ++ +G +V A G L A P+Q+P+ + V G S G++I T+ L V+ Sbjct: 121 YHLSAEGFVVDAHGNQ--LLGAGGPLQVPEGGAVL-VDADGGFSVNGELIDTIELVRVED 177 Query: 166 SQGFVRRENSGI----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + + NS + + P ED TV++GFLE +N N + EM MI + F Sbjct: 178 PRALEKVGNSLLRIRPGADAQAIPAED---STVEQGFLEAANVNVVSEMVNMIEAMRAFE 234 Query: 222 SITTLIDENEKSMLEAIRNIAS 243 + +I + + +AI + + Sbjct: 235 AYQKMISGSFEQDKKAIAEVGA 256 >gi|92114096|ref|YP_574024.1| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043] gi|91797186|gb|ABE59325.1| Flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043] Length = 260 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + + +L +++N+SN T GF+ + F +++ + S Sbjct: 1 MIRSLWTAKTGLESQQVKLDVISNNLSNVSTNGFKRSRPVFEDLLYQNVRQPGAQASAVD 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V +G ++ E G +T D A+ G +FA++ P G TRDG F Sbjct: 61 TLPSGLQVGTGVRPVATERLHTQGGLQNTDNSKDLAINGQGFFAVQMPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ ++G +V+A G YP+ PI IP+ ++ + G +S + + + L Sbjct: 121 QIDENGQMVTA-GGYPL----DPPIVIPENALSVSISQDGVVSVTQPGDTAAQEVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E P P + +G + +G++E SN N + EM MI Sbjct: 176 SKFINPAGLQSMGENLYQETDASGPRNDLIPGMEGAG-RLYQGYVETSNVNVVEEMVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + ++ +++ + + Sbjct: 235 ETQRAYEINSKAVETSDQMLSRLTQ 259 >gi|319403955|emb|CBI77543.1| Flagellar basal-body rod protein flgF [Bartonella rochalimae ATCC BAA-1498] gi|319406971|emb|CBI80608.1| Flagellar basal-body rod protein flgF [Bartonella sp. 1-1C] Length = 244 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 135/241 (56%), Gaps = 1/241 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q+ LE+R+ T+A NM+N +T GF+ +KF ++ ++ ++ ++ F + Sbjct: 1 MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFQAGGMKFDTLLSSVAHEQGDRVFFTS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S + GS + TG LD A+ GD++F++++ G + TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTDRGSLVETGNALDIAVVGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ + G I Q + +GL+ NS + P+ Sbjct: 120 LPFLDEGGAPIQLNPAGGTPRIVADGSIYQDNAFVGKIGLFQFQPGTQLRYGPNSSVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 E SG TV +G++E SN N + EM ++I +++ F + +++ + E+ ++I+ Sbjct: 180 KAAFQSEGGSGDTVVQGYIESSNVNGVIEMTRLIEVSRAFERVESMLRQQEEMRSKSIQI 239 Query: 241 I 241 + Sbjct: 240 L 240 >gi|307266108|ref|ZP_07547653.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter wiegelii Rt8.B1] gi|306918890|gb|EFN49119.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter wiegelii Rt8.B1] Length = 251 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----------AIK 49 M + + + + +A+N++N +TVG++ V S Sbjct: 1 MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNTPPN 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 I + V + + E G+F T +LDFA++G+ +F + +P G TRDG F ++ Sbjct: 61 GKIGRMDYGVLVDTFHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSFTLS 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG LV+ G Y V PIQ+ Q D +V E G I G+++ + + D G Sbjct: 121 KDGYLVTQEG-YIVEGENG-PIQLSQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDGL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N+ + + +K+GFLE SN NS+ EM MI + + + S ++ Sbjct: 177 RKEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIA 236 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 237 FDETLGKAVNEVG 249 >gi|149194278|ref|ZP_01871375.1| flagellar basal-body rod protein distal rod protein [Caminibacter mediatlanticus TB-2] gi|149135453|gb|EDM23932.1| flagellar basal-body rod protein distal rod protein [Caminibacter mediatlanticus TB-2] Length = 262 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 117/266 (43%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +A + ++ V++N+SN +T+G++ + +F+++ S Sbjct: 1 MVRSLYTAATGMMAQQTQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTATSTTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ G+ T LD A++GD +F ++ P G I TRDG F Sbjct: 61 KSPTGINVGLGVRPTAITKIFTQGNLKQTNNNLDLAIQGDGFFQVQLPDGRIGYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K+ DG++V++ G + I +P ++G G +S + + I + L Sbjct: 121 KLDADGNIVTSDGYKLI-----PNITLPPDTVQVSIGTDGTVSILQAGQTQMQQIGQIQL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 G ++ I+ + P+ D+ G T +++GF+E SN + EM +I Sbjct: 176 AKFINPAGLHSLGSNLYINTSASGDPIVDVPGQTGLGEIRQGFIEMSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + +++ + I +++ ML+ + N+ Sbjct: 236 GQRAYDAASKAIMTSDE-MLQTVNNL 260 >gi|118581849|ref|YP_903099.1| flagellar basal body rod protein FlgG [Pelobacter propionicus DSM 2379] gi|118504559|gb|ABL01042.1| flagellar basal-body rod protein FlgG [Pelobacter propionicus DSM 2379] Length = 262 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 106/267 (39%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + VA N++N +T GF+ + F +++ + + Sbjct: 1 MMRALWTAASGMQAQQKNIDVVAHNLANVNTTGFKRSRADFEDLIYQNQRSTGSPATNTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G F TG ELD A+EGD +F ++ P G +R G F Sbjct: 61 QVPTGIQIGLGTRLASVSKLFTTGDFSQTGNELDIAIEGDGFFQIQMPDGTTAYSRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K D G +V+ +G P+L I IP ++G G +S + T+ L Sbjct: 121 KKDDQGRIVTPNGD-PLLPE----IVIPNNTTKIDIGSDGTVSATQSGQTTPTTVGTIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E TP +D G TV +G LE SN + EM MI Sbjct: 176 ALFANPAGLFSMGKNLYKETDSSGTPTTGTPGQDGLG-TVAQGMLEMSNVSVAEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + + ++ ML+ N+ Sbjct: 235 IGQRAYEANSKAVQAADE-MLQTANNL 260 >gi|167038783|ref|YP_001661768.1| flagellar basal body rod protein [Thermoanaerobacter sp. X514] gi|256751340|ref|ZP_05492219.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus CCSD1] gi|300913632|ref|ZP_07130949.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X561] gi|307723353|ref|YP_003903104.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X513] gi|166853023|gb|ABY91432.1| flagellar basal body rod protein [Thermoanaerobacter sp. X514] gi|256749722|gb|EEU62747.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus CCSD1] gi|300890317|gb|EFK85462.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X561] gi|307580414|gb|ADN53813.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter sp. X513] Length = 251 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----------AIK 49 M + + + + +A+N++N +TVG++ V S Sbjct: 1 MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNIPPN 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 I + V + + E G+F T +LDFA++G+ +F +++P G TRDG F ++ Sbjct: 61 GKIGRMDYGVLVDTFHTNFEEGAFSQTNGKLDFAIDGNGFFVVDTPNGQRYTRDGSFTLS 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG LV+ G Y V PIQ+ Q D +V E G I G+++ + + D G Sbjct: 121 KDGHLVTKEG-YIVEGENG-PIQLSQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDGL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N+ + +K+GFLE SN NS+ EM MI + + + S ++ Sbjct: 177 RKEGNNLFFIDNSTNVQVIPVTGKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIA 236 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 237 FDETLGKAVNEVG 249 >gi|121601652|ref|YP_989405.1| putative flagellar basal-body rod protein FlgF [Bartonella bacilliformis KC583] gi|120613829|gb|ABM44430.1| putative flagellar basal-body rod protein FlgF [Bartonella bacilliformis KC583] Length = 244 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 132/242 (54%), Gaps = 1/242 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q++L +R+ T+A NM+N +T GFR +KF +V I + ++ F + Sbjct: 1 MQNPIYVGVSGQISLARRMETIAQNMANVNTPGFRAGGMKFDTLVSPIAQEQGDRVFFTS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S E GS TG LD A G+++F++E+ G++ TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTERGSLEQTGNALDVAATGNSYFSMEASFGVVYTRDGRMTMTPEGMLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ +G G I Q + +GLY N+ + P+ Sbjct: 120 LPFLDDGGAPIQLNPVGGAPRIGADGSIYQGNVLAGRIGLYQFQPGTQLRYGPNASVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +E +G V +G++E SN N + EM ++I +++ F + ++ + E+ ++I+ Sbjct: 180 RAAIQIEGGTGDGVMQGYVESSNVNGVAEMTRLIEVSRAFERVEAMLRQQEEMRSKSIQI 239 Query: 241 IA 242 + Sbjct: 240 LG 241 >gi|291280520|ref|YP_003497355.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] gi|290755222|dbj|BAI81599.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] Length = 262 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 109/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + + + + +++N++N +T GF+ +V F +++ + Sbjct: 1 MLRTLWTAASGMTTQQINIDNISNNLANVNTAGFKKSRVNFEDLLYQELKPAGGVTAAGI 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + G + +S G+F TG LD A+EGD +F + P G I TR+G F Sbjct: 61 NHPTGIQIGLGSKVVSTEKIFSQGNFQQTGNPLDIAIEGDGFFQVTLPDGTIGYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 KV DG+LV+A G I IP VGE G +S + + + L Sbjct: 121 KVDADGNLVTAEGYLL-----EPNIAIPDNALEIIVGEDGTLSVTLPGEAEPTELGQIEL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + + P ED G T+ +G LE SN N + EM +I Sbjct: 176 AKFINPSGLRSIGKNIYLQTAASGEPTTGIPGEDGFG-TLAQGILEMSNVNVVEEMVNLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML+ + N+ Sbjct: 235 TGQRAYEINSKAIQTGDE-MLQIVNNL 260 >gi|220932494|ref|YP_002509402.1| flagellar basal-body rod protein FlgG [Halothermothrix orenii H 168] gi|219993804|gb|ACL70407.1| flagellar basal-body rod protein FlgG [Halothermothrix orenii H 168] Length = 262 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 97/262 (37%), Gaps = 30/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + A + + T+++N++N +T GF+ +V F +++ S Sbjct: 1 MIGALWTAATGMDAQQTNIDTISNNLANVNTTGFKKTRVNFQDLMYQHIRQPGTPNSQGG 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G+ +T LD +EGD + + P G TRDG Sbjct: 61 QIPVGIEVGHGVKVSATQKIFSPGNIQNTDNPLDILIEGDGFLQVLLPDGTLAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K G +V++ G YP+ I IP+ ++ G I S + + I + L Sbjct: 121 KRDSMGRIVTSDG-YPIQPE----IYIPEDASSISITSDGTIAVEINGSNQPQQIGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P + P+ G T+ +GFLE SN + EM MI Sbjct: 176 ARFSNPAGLNSIGRNLFKPTVASGDPIVGTPGSPGFGTIAQGFLEMSNVKVVEEMVNMIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + I ++ + A Sbjct: 236 AQRAYEINSKAIQAADEMLRTA 257 >gi|220932495|ref|YP_002509403.1| flagellar basal body rod protein [Halothermothrix orenii H 168] gi|219993805|gb|ACL70408.1| flagellar basal body rod protein [Halothermothrix orenii H 168] Length = 248 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 111/250 (44%), Gaps = 13/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVV-----GAIKNDI 52 M ++ + ++++ VA+N++N +T G++ +V F EV + Sbjct: 1 MIKGIYTAASSMVTNQRKMKLVANNLANVNTAGYKRDEGIQVSFPEVFISRLEKGQATPL 60 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + + V ++Y G TG LD A++G+ +F +E+PRG TR+G F V + G Sbjct: 61 GELGTGVKIEEDYTDFREGQMNHTGNPLDVAIDGNGFFVVETPRGRRYTRNGNFTVNEQG 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 +V+ G YPVL I + ++ G++ + + + QG + Sbjct: 121 QIVTQQG-YPVLGERGPLQTI--RGRNISINTDGQLYLDNLEGDRLLIVDFENRQGLRKI 177 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + S +K+G+LE SN N + EM +MI + + F +I ++ Sbjct: 178 GENLYV--NEGIREIQASDYQIKQGYLETSNVNIVKEMVRMIEVNRAFEVNQKVIKNADQ 235 Query: 233 SMLEAIRNIA 242 ++ +A+ N+ Sbjct: 236 TLSKAVNNVG 245 >gi|94987183|ref|YP_595116.1| flagellar basal body rod protein FlgG [Lawsonia intracellularis PHE/MN1-00] gi|94731432|emb|CAJ54795.1| Flagellar basal body L-ring protein [Lawsonia intracellularis PHE/MN1-00] Length = 261 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S +A + + +++N++NT+T GF+ + +F +++ Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISNNLANTNTSGFKKSRAEFEDLMYQTMKIAGSATDGDN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 Q V + G F +TG LD A+EG+ +F + ++ TR G FK Sbjct: 61 RIPVGIQVGMGVRPTAVHKFFTQGDFQNTGNPLDMAIEGEGFFQVLVGDQLMYTRAGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI--ATMGLYS 162 + DG+LV+A+G YP+ +P + + E+G I+ G+ I + LYS Sbjct: 121 LNQDGTLVTANG-YPLQPEF----TVPPDAKSVAISERGRITALDANGQEIAAGEIPLYS 175 Query: 163 VDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + P + P E+ G T+ +GFLE SN + EM QMI Sbjct: 176 FVNPAGLDAKGRNLYIPTEASGEAVEGVPGEENLG-TIAQGFLEMSNVEVVDEMVQMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + A++ Sbjct: 235 QRAYEMNSKAIQTSDNMLQTAVQ 257 >gi|254503570|ref|ZP_05115721.1| conserved domain protein [Labrenzia alexandrii DFL-11] gi|222439641|gb|EEE46320.1| conserved domain protein [Labrenzia alexandrii DFL-11] Length = 243 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 141/244 (57%), Gaps = 6/244 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+AQ+AL RL TV+ N++N +T G+R ++ F+E+V D K+SF + Sbjct: 1 MQSALYVALSAQVALSNRLETVSRNVANMNTAGYRADEINFAEMVSKAGPD---KVSFSS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 G+ Y+S++ GS T LD A+EG+AWFA+ G+ TRDGR ++DDG+L + +G Sbjct: 58 GGENYISRQNGSLNKTDNPLDLAIEGEAWFAIRDANGGLSYTRDGRLHISDDGTLKTVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-VIATMGLYSVDMSQGFVRRENSGIS 178 + V+ PIQ+ + + G+I Q + ++ +GL+ + R+ENS + Sbjct: 118 Q-VVVGAGGQPIQLNPDGGTPLITQNGDIIQGDEDIVGQIGLFLIPNDAKLTRKENSAVV 176 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P+ P++ +++G++E +N N + EM +MI +++ F S T +ID +S AI Sbjct: 177 PDRAVIPVQVFDQHGIRQGYVEGANINPVREMTKMIMISRAFESATKMIDMGSESQKTAI 236 Query: 239 RNIA 242 R + Sbjct: 237 RELG 240 >gi|319405396|emb|CBI79015.1| Flagellar basal-body rod protein flgF [Bartonella sp. AR 15-3] Length = 244 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 134/241 (55%), Gaps = 1/241 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ +G++ Q+ LE+R+ T+A NM+N +T GFR +KF +V ++ ++ + F + Sbjct: 1 MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFRAGGMKFDTLVSSVAHEQGDHVFFTS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK Y+S + GS I TG LD A+ GD++F++++ G + TRDGR +T +G LVS +G Sbjct: 61 AGKGYISTDRGSLIQTGNALDIAVTGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD PIQ+ + + G I Q + +GL+ NS + P+ Sbjct: 120 LPFLDEGGAPIQLNPAGGMLRIVTDGSIYQDNVFVGKIGLFQFQPGTQLRYGPNSSVIPD 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 E+ +G V +G++E SN N + EM ++I +++ F + ++ + E+ ++I+ Sbjct: 180 RAAFQSEEGNGDGVVQGYIESSNVNGVIEMTRLIEVSRAFERVEAMLRQQEEMRSKSIQI 239 Query: 241 I 241 + Sbjct: 240 L 240 >gi|167038474|ref|YP_001666052.1| flagellar basal body rod protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116869|ref|YP_004187028.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857308|gb|ABY95716.1| flagellar basal body rod protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929960|gb|ADV80645.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 251 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 113/253 (44%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----------AIK 49 M + + + + +A+N++N +TVG++ V S Sbjct: 1 MLRGLYTASSGMITQTKIMDVLANNLANVNTVGYKRDVVVTSPFPNFEVTRHGGDNTPPN 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 I V + + E G+F T +LDFA++G+ +F + +P G TRDG F ++ Sbjct: 61 GKIGTMDYGVLVDTFHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSFTLS 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG LV+ G Y V PIQ+ Q D +V E G I G+++ + + D G Sbjct: 121 KDGYLVTQEG-YIVEGENG-PIQLSQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDGL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N+ + + +K+GFLE SN NS+ EM MI + + + S ++ Sbjct: 177 RKEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIA 236 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 237 FDETLGKAVNEVG 249 >gi|254720629|ref|ZP_05182440.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13] gi|265985673|ref|ZP_06098408.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13] gi|306837353|ref|ZP_07470232.1| flagellar basal body rod protein FlgF [Brucella sp. NF 2653] gi|264664265|gb|EEZ34526.1| flagellar basal body rod protein FlgF [Brucella sp. 83/13] gi|306407545|gb|EFM63745.1| flagellar basal body rod protein FlgF [Brucella sp. NF 2653] Length = 243 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ PI + + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGEPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|311068150|ref|YP_003973073.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] gi|310868667|gb|ADP32142.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] Length = 264 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 26/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++V + V Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGAQVG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 +G + STG LD A++GD +F +++ G + TR G F + Sbjct: 61 GTNSKQIGLGSSTGTIDTIHSTSATQSTGRTLDLAIDGDGYFQIDNGEGTVYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSV 163 ++G LV+ G Y V + I IP+ + F +G G +S G +G+ + Sbjct: 121 DNEGKLVTGDGYY-VQKLGGGEITIPKDAQNFTIGPDGSVSIVGAGGEKIDGGQIGIVTF 179 Query: 164 DMSQGFVRRENSGI-------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 S G + NS +P+ P + +G +K GFLE SN + E +MI Sbjct: 180 ANSDGLDKIGNSLYRESSNSGTPSAANIPGDGGTG-ELKSGFLEMSNVDLTDEFTEMIVA 238 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F S + +I +++ + E + Sbjct: 239 QRGFQSNSKIITTSDEILQELVN 261 >gi|256014918|ref|YP_003104927.1| flagellar basal-body rod protein FlgF [Brucella microti CCM 4915] gi|255997578|gb|ACU49265.1| flagellar basal-body rod protein FlgF [Brucella microti CCM 4915] Length = 243 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ PI + + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|225850285|ref|YP_002730519.1| flagellar basal-body rod protein FlgG [Persephonella marina EX-H1] gi|225645911|gb|ACO04097.1| flagellar basal-body rod protein FlgG [Persephonella marina EX-H1] Length = 266 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 104/270 (38%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L +++N++N +TVGF+ + F +++ D Sbjct: 1 MIRALWTSASGMGAQQTNLDVISNNIANVNTVGFKRSRANFEDLIYQDIKDPGVMSSNET 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRF 106 Q V GS I T LD A++GD +F +E P G TR G F Sbjct: 61 RVPSGIQIGLGVKLSDVSKIFTQGSLIKTDKPLDIAIQGDGFFKIELPGGGEAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATM 158 ++ ++G +V+ +G ++ I P+ ++ G++ Q + + + Sbjct: 121 QIDNEGYIVTPNGYRL---SPNIQISAPETLVSISISPNGKVYVVRNEGGQQTTEELTDI 177 Query: 159 GLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 LY G + P+E + +GFLE SN N + EM + Sbjct: 178 KLYKFINPAGLKAIGENLFKYTEASGEPIEGDPNTDGFGKLAQGFLEASNVNIVEEMVNL 237 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 I + + + I ++ ML + + S Sbjct: 238 IVAQRAYEINSKGIITADE-MLRTVGTLKS 266 >gi|1870712|gb|AAB48836.1| FlgF [Sinorhizobium meliloti] Length = 240 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 103/230 (44%), Positives = 151/230 (65%), Gaps = 6/230 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQT + L++Q+ALE+RL+T+ADN++N++TVGFR +VKF++V+G K K+S+V+ Sbjct: 1 MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTK---PTKVSYVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+E+LS + G+ TG+ LDFA++GDAWF++++P G LTRDGRF +T+ G LV+ G Sbjct: 58 EGEEFLSTKTGALR-TGSALDFAIKGDAWFSIDTPGGPALTRDGRFTLTETGELVTIKG- 115 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PIQ+ VG G I Q G +GLY D S+GF+R +NS + P Sbjct: 116 YPVLDAGGPPIQLNGGAGEIAVGADGAIHQNGVQTCLLGLYEADFSKGFMRYDNSSVMPA 175 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 P D V V +GFLE+SN N + EM Q+I +T+ F+++T L+ Sbjct: 176 AQPN-RRDRFDVGVMQGFLEESNVNGIQEMSQLIMITRAFDNVTALMRAT 224 >gi|327398888|ref|YP_004339757.1| flagellar basal-body rod protein FlgG [Hippea maritima DSM 10411] gi|327181517|gb|AEA33698.1| flagellar basal-body rod protein FlgG [Hippea maritima DSM 10411] Length = 262 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S A + + T+A+N++N +TVGF+ + F +++ + + Sbjct: 1 MIRSLWTAATGMEAQQLNVDTIANNLANVNTVGFKRSRADFEDLLYQMVRQPGVASTANT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + G+F TG LD A+ G +F ++ P G TR G F Sbjct: 61 VEPTGIQIGLGVKPAAVVKNFSQGNFKETGNPLDIAIAGHGFFQIQMPDGTTAYTRSGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K+ ++G +V++ G YP++ I IP N+G G +S Q I + L Sbjct: 121 KIDNNGRIVNSEG-YPLIPQ----ITIPNDTVAINIGNDGTVSVLEAGQQTPSQIGQIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E + P + G T+++G LE SN + + EM +MI Sbjct: 176 AYFVNPAGLKAIGHNLYQETTASGTATVDNPGSNGLG-TLEQGVLEMSNVSVVQEMVEMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ ML+ N+ Sbjct: 235 AAQRAYETNAKAIQTSDE-MLQTANNV 260 >gi|332800000|ref|YP_004461499.1| flagellar basal-body rod protein FlgG [Tepidanaerobacter sp. Re1] gi|332697735|gb|AEE92192.1| flagellar basal-body rod protein FlgG [Tepidanaerobacter sp. Re1] Length = 270 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 114/270 (42%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + + ++N++N +T GF+ + +F +++ D Sbjct: 1 MMRALWSASSGMQAQQLNMDITSNNLANVNTAGFKKSRAEFKDLLYETLQRPDSPELLSG 60 Query: 54 -------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 Q V G+ TG D A+EG +F +E P G + TRDG Sbjct: 61 AAVPVGIQVGHGVRPSATGRDFNEGNLQPTGNTFDVAIEGTGFFMVERPDGNLAFTRDGS 120 Query: 106 FKVTDDG---SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIAT 157 FKV+ DG +LV++ G Y VL I IP++ ++ G I+ + + + Sbjct: 121 FKVSLDGTDRNLVTSEGYY-VLSGDESYITIPEEYTDISISSDGLITGQDEDGTIEELGQ 179 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSGV---TVKRGFLEDSNANSMYEMG 211 +G+ QG + N+ P+ED+S T+ +GFLE SN + EM Sbjct: 180 IGIVKFLNPQGLLAIGNNLFEATEASGEYVPMEDVSDPGYGTLLQGFLEMSNVQVVEEMV 239 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + T + +++ + +A N+ Sbjct: 240 NLIIAQRAYEVNTKAVQASDEMLAQA-NNL 268 >gi|46205476|ref|ZP_00048498.2| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 241 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 135/242 (55%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ S + L++Q+ALE+RL+T A+N++N T GFR +V FSE++ ++FV Sbjct: 1 MQNSLYVALSSQIALEKRLTTTANNVANMATAGFRAEEVSFSELLAKSSRG---DVAFVD 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +GK LS+ G T + LD A++GDAW ++ P+G + TRDGR + +G L + G Sbjct: 58 AGKTALSRVAGPTTKTDSALDVAVQGDAWLGVKGPKGTLYTRDGRLTMDANGQLRTV-GG 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PV+D P+ + + +G G I Q + +GL+++D R + ++ + Sbjct: 117 LPVVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGLFTLDPKAKLTRSGENAVAAS 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +P P++D + + + +G++E +N N + EM ++I + + F S T+ E E ++ A++ Sbjct: 177 MPGQPVQDFTRLGIVQGYIEGANVNPILEMTKLIAIQRAFESAATMTSEAENTLTGAVKT 236 Query: 241 IA 242 Sbjct: 237 XG 238 >gi|163733142|ref|ZP_02140586.1| flagellar basal-body rod protein FlgF, putative [Roseobacter litoralis Och 149] gi|161393677|gb|EDQ18002.1| flagellar basal-body rod protein FlgF, putative [Roseobacter litoralis Och 149] Length = 237 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + Q L + + VA+N++N T GFR V FSE V ++ D +S Sbjct: 1 MENSGYTTITRQSGLAKEMRVVANNIANAATSGFRQEGVIFSEYVKSV--DGASSLSMGQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G TG + DFA+EGD +F +E+P G LTR G F DG LV+ G Sbjct: 59 ADARNTSFAQGGLTQTGGQFDFAIEGDGFFLVETPLGERLTRAGAFSPNADGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ IP E V G IS G + +GL QG +R + + Sbjct: 118 YRVLDAGGAPVFIPPGAEDIAVSADGTISTNGDPVGQLGLVQPLNPQGLLREDGVMFRAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E + + F+E+SN N + ++ +MI + + + + ++ ++ + +A+R Sbjct: 178 EGYEPAEQG---RILQSFVENSNVNPILQLTRMIEVQRAYELGASFLEAEDERVRQAMRT 234 Query: 241 I 241 I Sbjct: 235 I 235 >gi|23499891|ref|NP_699331.1| flagellar basal body rod protein FlgF [Brucella suis 1330] gi|148558748|ref|YP_001257194.1| flagellar basal body rod protein FlgF [Brucella ovis ATCC 25840] gi|163844323|ref|YP_001621978.1| flagellar basal body rod protein FlgF [Brucella suis ATCC 23445] gi|225628603|ref|ZP_03786637.1| flagellar basal body rod protein FlgF [Brucella ceti str. Cudo] gi|254699439|ref|ZP_05161267.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str. 513] gi|254706314|ref|ZP_05168142.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M163/99/10] gi|254711394|ref|ZP_05173205.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis B2/94] gi|254711993|ref|ZP_05173804.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1] gi|254715063|ref|ZP_05176874.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1] gi|256029976|ref|ZP_05443590.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M292/94/1] gi|256158141|ref|ZP_05456057.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1] gi|256252908|ref|ZP_05458444.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94] gi|261216770|ref|ZP_05931051.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1] gi|261219997|ref|ZP_05934278.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94] gi|261313761|ref|ZP_05952958.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M163/99/10] gi|261319000|ref|ZP_05958197.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis B2/94] gi|261319637|ref|ZP_05958834.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1] gi|261749890|ref|ZP_05993599.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str. 513] gi|265986997|ref|ZP_06099554.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M292/94/1] gi|265996658|ref|ZP_06109215.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1] gi|294853152|ref|ZP_06793824.1| flagellar basal-body rod protein FlgF [Brucella sp. NVSL 07-0026] gi|23463466|gb|AAN33336.1| flagellar basal-body rod protein FlgF [Brucella suis 1330] gi|148370033|gb|ABQ62905.1| flagellar basal-body rod protein FlgF [Brucella ovis ATCC 25840] gi|163675046|gb|ABY39156.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|225616449|gb|EEH13497.1| flagellar basal body rod protein FlgF [Brucella ceti str. Cudo] gi|260918581|gb|EEX85234.1| flagellar basal body rod protein FlgF [Brucella ceti B1/94] gi|260921859|gb|EEX88427.1| flagellar basal body rod protein FlgF [Brucella ceti M13/05/1] gi|261292327|gb|EEX95823.1| flagellar basal body rod protein FlgF [Brucella ceti M644/93/1] gi|261298223|gb|EEY01720.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis B2/94] gi|261302787|gb|EEY06284.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M163/99/10] gi|261739643|gb|EEY27569.1| flagellar basal body rod protein FlgF [Brucella suis bv. 5 str. 513] gi|262550955|gb|EEZ07116.1| flagellar basal body rod protein FlgF [Brucella ceti M490/95/1] gi|264659194|gb|EEZ29455.1| flagellar basal body rod protein FlgF [Brucella pinnipedialis M292/94/1] gi|294818807|gb|EFG35807.1| flagellar basal-body rod protein FlgF [Brucella sp. NVSL 07-0026] Length = 243 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ PI + + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|89069819|ref|ZP_01157154.1| putative flagellar basal body rod protein [Oceanicola granulosus HTCC2516] gi|89044620|gb|EAR50736.1| putative flagellar basal body rod protein [Oceanicola granulosus HTCC2516] Length = 239 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 5/239 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + +A+N++N T G+R+ V FSE V A+ D +S Sbjct: 1 MGNASYTTLTRQSGLMAEMRLIANNIANAATTGYRSEGVIFSEYVSALGPGHDS-LSMAR 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G +TG D A+EG+ +F +++P G LTR G F +G LV+ G Sbjct: 60 AAVRDTDISPGGMTATGGAFDLAIEGEGFFLVQTPGGERLTRAGHFMPNANGDLVTPDG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD P+ +P V G +S G+ + +G+ G VR + Sbjct: 119 YPVLDAGGAPLFVPPAAASVTVAPDGVLSADGQPLGQVGVVRPRDPAGLVREDGVRFRAE 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P+ V V +GFLE+SN + + ++ +MI + + + +++ ++ + AIR Sbjct: 179 GGFEPV---PRVRVAQGFLEESNVDPILQVARMIEVQRAYELGQRFLEQEDERLRGAIR 234 >gi|197122909|ref|YP_002134860.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter sp. K] gi|220917701|ref|YP_002493005.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter dehalogenans 2CP-1] gi|196172758|gb|ACG73731.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter sp. K] gi|219955555|gb|ACL65939.1| flagellar basal-body rod protein FlgG [Anaeromyxobacter dehalogenans 2CP-1] Length = 266 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 32/262 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 S A + R+ +A+N++NT T GF+ + +F +++ + + Sbjct: 7 LRSLYTAATGMEAQQLRMDVIANNLANTGTTGFKRQRAEFEDLLSETIHGAEAPDPRGGT 66 Query: 54 -----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 Q V +G + G ++TG LD A+EGD +F ++ P G TR G F+ Sbjct: 67 APAALQVGLGVRTGSTVRNFGQGELLTTGNALDLAIEGDGFFRVQRPDGSLAYTRAGNFR 126 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLY 161 V G LV+A G+ I P + V G + + + + + L Sbjct: 127 VDAAGRLVTARGEVV-----DPEITFPPETTRVTVDADGTVRAQVAGREAPQELGRLELC 181 Query: 162 SVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G + + + P E +G T+ +GFLE +N ++ EM MI Sbjct: 182 TFPNPGGLEAAGGNLLLQTAASGEAVDARPGEQGAG-TLAQGFLEGANVKAVEEMIDMIA 240 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + ++ ++ + Sbjct: 241 TQRAYELNSRVVQTADQMLQRL 262 >gi|254702556|ref|ZP_05164384.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str. 686] gi|261753134|ref|ZP_05996843.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str. 686] gi|261742887|gb|EEY30813.1| flagellar basal body rod protein FlgF [Brucella suis bv. 3 str. 686] Length = 243 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ PI + + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGVIGLYTIPADADLAYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|163850121|ref|YP_001638164.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] gi|240137255|ref|YP_002961724.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|254559266|ref|YP_003066361.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] gi|163661726|gb|ABY29093.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] gi|240007221|gb|ACS38447.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|254266544|emb|CAX22308.1| Flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] Length = 242 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 138/243 (56%), Gaps = 5/243 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L++Q+ALE+RL+T A+N++N TVGFR +V FSE++ +++FV Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATVGFRAEEVSFSELLARSNRG---EVAFVG 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 GK +S+ G T + LD A++GDAW ++ P+G + TRDGR + +G L + G Sbjct: 58 PGKTTISRAAGPTTKTDSALDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTV-G 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 PV+D P+ + + +G G I Q + +G++S+D R + ++ Sbjct: 117 GMPVVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGVFSIDPKATLTRSGENAVAA 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++P P++D + + + +G++E +N N + EM ++I + + F S T+ E + ++ A++ Sbjct: 177 SLPGRPVQDFTRIGLVQGYVEGANVNPIMEMTRLIAIQRAFESAATMTSEADTTLTGAVK 236 Query: 240 NIA 242 + Sbjct: 237 TLG 239 >gi|297616912|ref|YP_003702071.1| flagellar basal-body rod protein FlgG [Syntrophothermus lipocalidus DSM 12680] gi|297144749|gb|ADI01506.1| flagellar basal-body rod protein FlgG [Syntrophothermus lipocalidus DSM 12680] Length = 261 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 101/263 (38%), Gaps = 29/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQK 55 M + A + + +A N++N +T G++ +V+F +++ + ND + Sbjct: 1 MLRALYTSSTGMFAQQLNIDNIAHNIANVNTTGYKKSRVEFQDLIYQMLRRPVANDTTVQ 60 Query: 56 ISFVASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFK 107 S + G G+ T LD A++G A+F ++SP + TRDG FK Sbjct: 61 PSGLWVGLGVKPSATQTIFSQGNLTPTDNPLDVAIQGQAFFRVQSPTNEEYLYTRDGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLY 161 + +G+LV+ G Y V I + + G ++ + + L Sbjct: 121 LDSEGNLVTTDGYYVVGVD-----TIDPEGYDVTIAPDGTVTYKMPGQDEPVEAGQVELA 175 Query: 162 SVDMSQGFVRRENSGISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + P E + V++ G+LE +N + EM +I Sbjct: 176 KFTNPAGLEKIGGNLYRPTASSGEAIDWDPEADTTVSLHAGYLEAANIQIVEEMVNLITA 235 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + A Sbjct: 236 QRAYEINSKVIQSADEMLGMAAN 258 >gi|302392939|ref|YP_003828759.1| flagellar basal-body rod protein FlgG [Acetohalobium arabaticum DSM 5501] gi|302205016|gb|ADL13694.1| flagellar basal-body rod protein FlgG [Acetohalobium arabaticum DSM 5501] Length = 262 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------KNDID 53 M S A + + T+++N++N +T GF+ +V F +++ N Sbjct: 1 MIRSLWTAATGMKAQQLNIDTISNNLANVNTNGFKKSRVNFQDLMYQSLREAGTPNNQGS 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + + G GSF TG LD A+EGD +F + P G + TRDG F Sbjct: 61 QVPAGIEVGHGVRPAATQKLFAQGSFQQTGNPLDMAIEGDGFFQVVRPNGQVGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 K +G +V++ G YP+ I IP+ ++ +G + K + + L Sbjct: 121 KRDSNGRIVTSDG-YPLASD----ITIPEDTTDVSITAEGRVMVKQPGNEEVTEVGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P ED G T+ +G+LE N + EM MI Sbjct: 176 SRFSNPAGLKSIGRNLFAETPASGGPTVGVPAEDGFG-TISQGYLEKGNVKVVEEMTNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ + +A N+ Sbjct: 235 AAQRAYEVNSKAIKASDQMLQQA-NNL 260 >gi|188579923|ref|YP_001923368.1| flagellar basal body rod protein [Methylobacterium populi BJ001] gi|179343421|gb|ACB78833.1| flagellar basal body rod protein [Methylobacterium populi BJ001] Length = 242 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 137/243 (56%), Gaps = 5/243 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L++Q+ALE+RL+T A+N++N T GFR +V FSE++ +++FV Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATAGFRAEEVSFSELLARSNRG---EVAFVG 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 GK LS+ G T + LD A++GDAW ++ P+G + TRDGR + +G L + G Sbjct: 58 PGKNTLSRAAGPTTKTDSALDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTV-G 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 PV+D P+ + + +G G I Q + +G++S+D R + ++ Sbjct: 117 GMPVVDPGGGPLLLDPQAGPPTIGRDGSIHQGVNQVGALGVFSLDPKATLSRSGENAVAA 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++P P++D + + V +G++E +N N + EM ++I + + F S T+ E + ++ A++ Sbjct: 177 SLPGRPVQDFTRIGVVQGYVEGANVNPILEMTRLIAIQRAFESAATMTSEADNTLTGAVK 236 Query: 240 NIA 242 + Sbjct: 237 TLG 239 >gi|115523557|ref|YP_780468.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisA53] gi|115517504|gb|ABJ05488.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisA53] Length = 254 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 14/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + IGL+ Q+ LE+++ VA+N++N +T GF+ + F E + + D++ Sbjct: 1 MENAQLIGLSRQVTLERQMDVVANNVANMNTTGFKAERTLFEEYLSPRAHEDNFVGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V + G T LD A++G+A+ +++P G TRDG ++ G LV Sbjct: 61 VSYVQDRATFHDFSSGPLEQTKNPLDVAIDGEAFLVVQTPAGERYTRDGSLQINSQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +ASG Y VL PI D+ N+ G +S + + L + +Q Sbjct: 121 TASG-YQVLGTNG-PIVFQSTDKDINIAADGNVSVLEGTATVDSLRGKLRLVNFANAQQL 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 V+ E S + + + V++GF+E SN NS+ EM +MI +T+ + ++ ++ + Sbjct: 179 VK-EGSNLYSAAGGAAAQQDTKAQVRQGFIEKSNVNSVMEMTRMIDVTRAYTQLSAMLQQ 237 Query: 230 NEKSMLEAIRNIA 242 + A+ +A Sbjct: 238 QGELRRTALEKLA 250 >gi|121596119|ref|YP_988015.1| flagellar basal-body rod protein FlgG [Acidovorax sp. JS42] gi|222112274|ref|YP_002554538.1| flagellar basal-body rod protein flgg [Acidovorax ebreus TPSY] gi|120608199|gb|ABM43939.1| flagellar basal-body rod protein FlgG [Acidovorax sp. JS42] gi|221731718|gb|ACM34538.1| flagellar basal-body rod protein FlgG [Acidovorax ebreus TPSY] Length = 260 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 112/263 (42%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N T GF+ F +++ + + + Sbjct: 1 MMNSLWIAKTGMTAQQTQLDVISHNLANVSTTGFKRNNAVFEDLIYQNLRQVGSQTTEEN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + GS +G LD A++G+ +F ++ P G TRDG F Sbjct: 61 QLPTGLHLGLGVNVVATSRNFTQGSLQQSGNSLDVAIDGNGFFEVQLPDGTTGYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ G +V++SG PV I +P + ++ E+G +S + I +G+ Sbjct: 121 KLDSQGRVVTSSG-LPVAPG----ITVPADAKSISISERGMVSVTVAGNPNPQQIGQLGM 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S S G + RE++ P + G+ +K+GFLE+SN N + E+ MI Sbjct: 176 SSFINSAGLEPVGQNLYRESAASGAPQQAEPGTNGLGI-IKQGFLENSNVNVVEELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 QTQRAYEMNSKAIQTSDQMLAKL 257 >gi|283850806|ref|ZP_06368092.1| flagellar basal-body rod protein FlgF [Desulfovibrio sp. FW1012B] gi|283573729|gb|EFC21703.1| flagellar basal-body rod protein FlgF [Desulfovibrio sp. FW1012B] Length = 260 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 22/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M+ S L L+ E RL+ A+N++N +T G++ +V F + +D Sbjct: 1 MEMSMYSALFGALSTETRLNLSANNLANINTTGYKRDRVAFEDTFKRYAHDYHVDPRGDL 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 I+ + + G+ TG LD A++G +F + + G TR+G Sbjct: 61 REKEIFPRADLIAKPRLAMQTIDFSQGALQLTGNPLDLAIQGPGFFKVSNAGGTYYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + G LV+ YPVL PIQIP F+V G + G +A + + +V Sbjct: 121 AFHRSSQGMLVTDQ-DYPVLGNGG-PIQIP-DGRSFSVDATGAVYVDGGQVAQIDVVNVQ 177 Query: 165 MSQGFVRRENSGISPNIPPTPLED---LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + + + T E V +G+LE N + EM MI + F Sbjct: 178 NPDALRKYGANLYTAADGATVQEGPAEGGTTQVAQGYLEKPNVEVVEEMVTMIETQRTFE 237 Query: 222 SITTLIDENEKSMLEAIR 239 + ++ + + +AIR Sbjct: 238 AYQKVMTNSNELDTKAIR 255 >gi|300114797|ref|YP_003761372.1| flagellar basal-body rod protein FlgG [Nitrosococcus watsonii C-113] gi|299540734|gb|ADJ29051.1| flagellar basal-body rod protein FlgG [Nitrosococcus watsonii C-113] Length = 261 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 111/266 (41%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + R++T+++N++N +T GF+ + F +++ + S Sbjct: 1 MNQALWIAKTGLDAQQTRMATISNNLANVNTTGFKRDRAVFEDLLYQTVRQPGAQSSQNT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ G TG LD A++G +F + P G TRDG F Sbjct: 61 LLPSGLMLGTGVRTVATEKLFTQGGLTQTGNSLDMAIQGRGFFQVLMPDGSLAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G LV++SG YPV I IPQ VG G +S + L Sbjct: 121 QIDANGQLVTSSG-YPVQPG----ITIPQSALSVTVGSDGIVSVLMPGDGTPVQAGNLQL 175 Query: 161 YSVDMSQGFVRRENSGI----SPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G N+ + + T + L+G+ T+ +G LE +N N + E+ MI Sbjct: 176 ADFINPAGLQPTGNNLFKETAASGVAQTGIPGLNGIGTLVQGALEGANVNVVEELVNMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ + A + + Sbjct: 236 TQRAYEMNSKAISSTDEMLRFATQTL 261 >gi|224372657|ref|YP_002607029.1| flagellar basal body rod protein FlgG [Nautilia profundicola AmH] gi|223588586|gb|ACM92322.1| flagellar basal-body rod protein FlgG [Nautilia profundicola AmH] Length = 262 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 117/267 (43%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +A + ++ V++N+SN +T+G++ + +F+++ S Sbjct: 1 MVRSLYTAATGMMAQQMQIDVVSNNISNVNTIGYKKQRAEFADLFYQTMEYAGTSTSTTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ G+F TG LD A++GD +F ++ P G I TRDG F Sbjct: 61 QSPTGINVGLGVRPTAVTKIFSQGNFKETGNNLDVAIQGDGFFQVQLPDGRIAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ DG++V++ G + I +P ++G G +S + + I + + Sbjct: 121 KLDADGNIVTSDGYKLI-----PNITLPADTVQVSIGTDGTVSVLEAGQTQMQQIGQIEI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + + I TP D +G +++GF+E SN + EM +I Sbjct: 176 AKFINPAGLHSLGSNLYIDTTASGDPIVSTPGLDGTG-ELRQGFVEMSNVQLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + +++ + I +++ ML+ + N+ Sbjct: 235 TGQRAYDAASKAIVTSDE-MLQTVNNL 260 >gi|256059629|ref|ZP_05449826.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33] gi|261323599|ref|ZP_05962796.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33] gi|261299579|gb|EEY03076.1| flagellar basal body rod protein FlgF [Brucella neotomae 5K33] Length = 243 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ PI + + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 SKPAQPVVDDNSVGVVQGMIESSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|209963564|ref|YP_002296479.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] gi|209957030|gb|ACI97666.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] Length = 248 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 14/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + L+ Q+A+ + L A+N++N +T FR + F V K QK++FV Sbjct: 1 MENSLYVALSQQMAVRRMLDVTANNVANMNTAAFRAERPVFDAFV--EKAGKGQKVAFVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 Y G+ STG LD A+ GDAW ++ +P GI TRDGR DG LV+ G Sbjct: 59 DRATYTDTRDGTVASTGNPLDVAVRGDAWLSVATPDGIRYTRDGRLNRDPDGRLVTLDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKV--IATMGLYSVDMSQGFVRR 172 YPVLD I +P+ + G I S+ G+V + +GL + + R Sbjct: 118 YPVLDEGGGEITLPEDVGAIAITADGAIRAPAVDSENGEVEELGRLGLARLPAAGDLERD 177 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + + + P P E G T+ +G +E SN + EM +++ LT+ + +++ + Sbjct: 178 GSGLVRYDGDPLPAE---GATLIQGAVEGSNVQPITEMVRLVELTRAYGQANRMVESEHE 234 Query: 233 SMLEAIRNIA 242 AI + Sbjct: 235 RQKTAISKLG 244 >gi|82702455|ref|YP_412021.1| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC 25196] gi|82410520|gb|ABB74629.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 260 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +A+N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ TG D A++G +F + P G TRDG F Sbjct: 61 QLPSGLQLGTGVRPVATEHIFTQGNLQQTGNSKDVAIQGQGFFQVLRPDGSTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 + +G LV++SG + I IP + VG G +S + + + L Sbjct: 121 QTDFEGQLVTSSGYHV-----QPAITIPPNAQSITVGRDGIVSVTTQDSTTPVQVGNLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P D +G+ + +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLQSVGENLYVETASSGTPNVTNPGTDGAGL-LNQGYVETSNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 QTQRAYEINSKSVQTSDQMLQRLTQ 259 >gi|218528725|ref|YP_002419541.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] gi|218521028|gb|ACK81613.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] Length = 242 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 138/243 (56%), Gaps = 5/243 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L++Q+ALE+RL+T A+N++N TVGFR +V FSE++ +++FV Sbjct: 1 MQSSLYVALSSQIALEKRLTTTANNVANMATVGFRAEEVSFSELLARSNRG---EVAFVG 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 GK +S+ G T + LD A++GDAW ++ P+G + TRDGR + +G L + G Sbjct: 58 PGKTTISRAAGPTTKTDSTLDVAVQGDAWLGVKGPKGDTLYTRDGRLTMDANGQLRTV-G 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 PV+D P+ + + +G G I Q + +G++S+D R + ++ Sbjct: 117 GMPVVDPGGGPLLLDPQAGPPVIGRDGSIHQGVNQVGALGVFSIDPKATLTRSGENAVAA 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++P P++D + + + +G++E +N N + EM ++I + + F S T+ E + ++ A++ Sbjct: 177 SLPGRPVQDFTRIGLVQGYVEGANVNPIMEMTRLIAIQRAFESAATMTSEADTTLTGAVK 236 Query: 240 NIA 242 + Sbjct: 237 TLG 239 >gi|23015787|ref|ZP_00055554.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 246 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 7/246 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 MQ + I L+ Q AL +++ VA+NM+N +T F+ ++ F E + ++ I K++ Sbjct: 1 MQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAIGGKLA 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 FV G T LDFAL GD +F +E+ G+ R+G F++ G LV++ Sbjct: 61 FVQDVGVLRDTREGPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVNS 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G Y V+D PI + V G +S + +A M + + Q + +S Sbjct: 121 QG-YAVMDDRDQPIVFAPNETRVEVASDGTVSTENGRVARMKVVKFENDQLLRKAGDSLF 179 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P E + V +G +E+SN + EM +M + +++ + ++D + L+A Sbjct: 180 ETTQDP---EAVQSPNVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHERQLKA 236 Query: 238 IRNIAS 243 I+ + S Sbjct: 237 IQTLGS 242 >gi|325295399|ref|YP_004281913.1| flagellar basal-body rod protein FlgG [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065847|gb|ADY73854.1| flagellar basal-body rod protein FlgG [Desulfurobacterium thermolithotrophum DSM 11699] Length = 266 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 103/270 (38%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + L ++ N++N +TVGF+ + F +++ D Sbjct: 1 MLRALWTSATGMEAQQTNLDVISHNIANVNTVGFKKSRANFEDLIYQDIRDPGVMSSEEN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRF 106 Q V GS + T LD A++G +F +E P G TR G F Sbjct: 61 RVPSGIQIGLGVKVSDVSKIFTQGSLMKTDKPLDLAIQGAGFFKIELPGGGEAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATM 158 ++ ++G +V+ G ++ I P+ ++ G++ Q + + T+ Sbjct: 121 QLNEEGYIVTPEGYKL---SPNIQISSPETVVNISISPNGKVYVVRNTGGVQTTEEVGTI 177 Query: 159 GLYSVDMSQGFVRRENSGIS-PNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 LY G + + + P+E + +GFLE SN N + EM + Sbjct: 178 KLYRFINPAGLKALGGNLLVKTDASGEPVEGDPNTDGFGKLAQGFLEASNVNIVEEMVNL 237 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 I + + + I ++ ML + + S Sbjct: 238 IVAQRAYEVNSKGITTADE-MLRVVGTLKS 266 >gi|306846298|ref|ZP_07478859.1| flagellar basal body rod protein FlgF [Brucella sp. BO1] gi|306273293|gb|EFM55162.1| flagellar basal body rod protein FlgF [Brucella sp. BO1] Length = 243 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANVSTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ PI + + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGEPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADVAYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQETTVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|78221651|ref|YP_383398.1| hypothetical protein Gmet_0430 [Geobacter metallireducens GS-15] gi|78192906|gb|ABB30673.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 242 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 12/247 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + L +A +RL +++N++N +T GF+ ++ F ++ + Sbjct: 1 MNSGIYSALTGNVAAMKRLDVLSNNLANVNTPGFKKDRMTFESMLQTVGAQPRPGGGTDA 60 Query: 58 -FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 A + GS TG D A++GD +FA+ + G TR G F++ G LV Sbjct: 61 PVFAETTFFTDYSPGSVKQTGNPFDLAIDGDGFFAVTTADGQRAYTRQGNFRLDSTGRLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 +A G V I ++ KGE+ G + + + + Sbjct: 121 TADGAQV---AGGVVIA----GGKVDINGKGEVLVDGSQVGRLEVVDFPKPYALQKLGGG 173 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P P ++G V +G +E+SN N++ EM Q+I + F + ++ + Sbjct: 174 LFVPADPQATPNPVTGEKVMQGAIEESNVNTVQEMVQLIETNRYFEMCSKVVKAYDDLTG 233 Query: 236 EAIRNIA 242 +A I Sbjct: 234 KAANEIG 240 >gi|262652|gb|AAB24738.1| flagellar basal body proximal rod protein [Caulobacter vibrioides] Length = 248 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 4/234 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK--VKFSEVVGAIKNDIDQKISF 58 M + +GL+ Q+ + + L VA+N++N +T GF+ V+ + A D + F Sbjct: 1 MDNALYVGLSRQMTVRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + G TG + D A+ G +F +++ G TRDGRF +G LV+ + Sbjct: 61 VMDTGVRRNFTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQA 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G PVLD I I + VG+ G +SQ + +GL D F + ++ + Sbjct: 121 GA-PVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDN-LY 178 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 N T + ++ + +G LE SN + E+ ++I + + + S+ ++D + Sbjct: 179 RNTTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMDNTAE 232 >gi|319790434|ref|YP_004152067.1| flagellar basal-body rod protein FlgG [Thermovibrio ammonificans HB-1] gi|317114936|gb|ADU97426.1| flagellar basal-body rod protein FlgG [Thermovibrio ammonificans HB-1] Length = 266 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 103/270 (38%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L +++N++N +TVGF+ + F +++ D Sbjct: 1 MLRALWTSASGMEAQQTNLDVISNNIANVNTVGFKRSRANFEDLMYQDIRDPGVMSSEEN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRF 106 Q V GS I T LD A++G +F +E P G TR G F Sbjct: 61 RVPTGIQIGLGVKLSDVSKIFTQGSLIKTDKPLDVAIQGPGFFKIELPGGGEAYTRAGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATM 158 ++ ++G +V+ G ++ I P+ ++ G++ Q + T+ Sbjct: 121 QLDNEGYIVTPEGYRL---SPNIQISAPETVVNISISPNGKVYVVRNTGGQQVTEEAGTI 177 Query: 159 GLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 LY G + P+E + +GFLE SN N + EM + Sbjct: 178 KLYRFINPAGLKAIGGNLFVQTEASGEPIEGDPNTDGFGKLTQGFLEASNVNIVEEMVNL 237 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 I + + + I ++ ML + ++ + Sbjct: 238 IVAQRAYEINSKGIIAADE-MLRTVASLKT 266 >gi|86750895|ref|YP_487391.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris HaA2] gi|86573923|gb|ABD08480.1| Flagellar basal body rod protein [Rhodopseudomonas palustris HaA2] Length = 253 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 126/253 (49%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 MQ + +GL+ Q+ LE+++ VA+N++N +T GF+ + F E + ++ D++ Sbjct: 1 MQNTLLVGLSRQVVLERQMDVVANNLANMNTNGFKAQRSVFQEYLNTGAHEDNFQRPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV YL G T LD A++G A+ +++P G TRDG+ + G LV Sbjct: 61 VSFVQDRAAYLDFSTGPMTQTKDPLDVAIDGSAFLVVQTPAGERFTRDGKLSINPRGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI------ATMGLYSVDMSQGF 169 ++SG YPVL + PI D+ N+ + G +S + L S Q Sbjct: 121 NSSG-YPVLGNSG-PIVFQPTDKAINIAQDGNVSVVEGTATIDSLRGKLRLVSFARPQSL 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ ++ + P + V++G++E SN NS+ EM +M+ +T+ + +++L+ + Sbjct: 179 EKQGDNLFAATSD--PGAPDTKAIVRQGYVEKSNVNSVLEMTRMLDVTRSYQKMSSLLQQ 236 Query: 230 NEKSMLEAIRNIA 242 AI +A Sbjct: 237 EGDLQKTAIERLA 249 >gi|77165836|ref|YP_344361.1| hypothetical protein Noc_2373 [Nitrosococcus oceani ATCC 19707] gi|254434083|ref|ZP_05047591.1| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27] gi|76884150|gb|ABA58831.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090416|gb|EDZ67687.1| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27] Length = 261 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + R++T+++N++N +T GF+ + F +++ + S Sbjct: 1 MNQALWIAKTGLDAQQTRMATISNNLANVNTTGFKRDRAVFEDLLYQTVRQPGAQSSQNT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ G TG LD A++G +F + P G TRDG F Sbjct: 61 LLPSGLMLGTGVRTVATEKLFTQGGLTQTGNSLDMAIQGRGFFQILMPDGSLAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVI--ATMGL 160 ++ +G LV++SG YPV I IP+ VG G +S G I + L Sbjct: 121 QIDANGQLVTSSG-YPVQPG----ITIPESALSVTVGSDGIVSVLMAGDGTPIQAGNLQL 175 Query: 161 YSVDMSQGFVRRENSGI----SPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G N+ S + T + L+G+ T+ +G LE +N N + E+ MI Sbjct: 176 ADFINPAGLQPTGNNLFKETASSGVAQTGIPGLNGIGTLVQGALEGANVNVVEELVNMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ + A + + Sbjct: 236 TQRAYEMNSKAISSTDEMLRFATQTL 261 >gi|34558104|ref|NP_907919.1| flagellar basal body rod protein FlgG [Wolinella succinogenes DSM 1740] gi|34483822|emb|CAE10819.1| FLAGELLAR BASAL-BODY ROD PROTEIN DISTAL ROD PROTEIN [Wolinella succinogenes] Length = 263 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 113/266 (42%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + ++ ++N++N +T+G++ + +F+++ + S Sbjct: 1 MMRALYTATTGMMGQQLQIDVTSNNIANVNTIGYKKQRAEFADLFYQVMEYAGSSTSETT 60 Query: 61 SGKEYL-------------SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G+F TG LD A+ G+ +F ++ P G TR+G F Sbjct: 61 LSPTGIEVGLGVRPTAITKIFSQGNFKETGNNLDIAITGNGFFQIQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K D+G++V++ G + I IP+ N+G G +S + I + + Sbjct: 121 KPDDEGNIVNSDGYRLI-----PEITIPEDATQINIGVDGTVSVLQGNQTEVNTIGQIEI 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G ++ ++ N P+ D G+ +++GF+E SN + EM +I Sbjct: 176 ATFINPAGLHSLGDNLYLNTNASGDPIVDTPGLNGFGQLRQGFVELSNVKLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ + ++ Sbjct: 236 GQRAYEANSKSIQTAD-SMLQTVNSL 260 >gi|225619854|ref|YP_002721111.1| flagellar basal body rod protein FlgG [Brachyspira hyodysenteriae WA1] gi|225214673|gb|ACN83407.1| flagellar basal body rod protein FlgG [Brachyspira hyodysenteriae WA1] Length = 264 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + ++ + T+A+N++N +T+G++ ++ F +++ + Sbjct: 1 MVRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V S + GS +TG +LD ALEG+ +F + P G + TRDG F Sbjct: 61 VTPVGLQTGLGVKSAATQKMFDQGSLQATGNKLDLALEGEGFFQVLMPDGSVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ +G LV+++G V I P+ E ++ +G +S I + Sbjct: 121 KIDANGQLVTSNGYRLV-----PEIVFPENFLVEQISISREGIVSVKIGDENDPVEIGQI 175 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPL-EDLSGV----TVKRGFLEDSNANSMYEMGQM 213 L+ G + ++ I P E G + +GF+E SN + EM M Sbjct: 176 TLHRFINQPGLLSIGDNLYKETIASGPAFEGEPGANGFPRIHQGFVEMSNVKVVDEMVDM 235 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + ++ + + Sbjct: 236 IVAQRAYEMNSKAVQTSDNLLATVVN 261 >gi|326389273|ref|ZP_08210841.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus JW 200] gi|325994636|gb|EGD53060.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter ethanolicus JW 200] Length = 251 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----------AIK 49 M + + + + + +N++N +TVG++ V S Sbjct: 1 MLRGLYTASSGMITQTKIMDVLVNNLANVNTVGYKRDVVVTSSFPNFEVTRHGGDNTPPN 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 I + V + + E G+F T +LDFA++G+ +F + +P G TRDG F ++ Sbjct: 61 GKIGRMDYGVLVDTFHTNFEEGAFSQTNGKLDFAIDGNGFFVVNTPNGQRYTRDGSFTLS 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG LV+ G Y V PIQ+ Q D +V E G I G+++ + + D G Sbjct: 121 KDGYLVTQEG-YIVEGENG-PIQLSQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDGL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N+ + + +K+GFLE SN NS+ EM MI + + + S ++ Sbjct: 177 RKEGNNLFFIDNSANVQVIPATGKIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIA 236 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 237 FDETLGKAVNEVG 249 >gi|86157777|ref|YP_464562.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C] gi|85774288|gb|ABC81125.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C] Length = 266 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 103/262 (39%), Gaps = 32/262 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 S A + R+ +A+N++NT T GF+ + +F +++ + Sbjct: 7 LRSLYTAATGMEAQQLRMDVIANNLANTGTTGFKRQRAEFEDLLSETVRGAEAPDPRGGT 66 Query: 54 -----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 Q V +G + G ++TG LD A+EGD +F ++ P G TR G F+ Sbjct: 67 APAPLQVGLGVRTGSTVRNFGQGELLTTGNALDLAVEGDGFFRVQRPDGSLAYTRAGNFR 126 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLY 161 V G LV+A G+ I P + V G + + + + + L Sbjct: 127 VDAAGRLVTARGEVV-----DPEITFPPETTRVTVDADGTVRAQVAGREAPQELGRLELC 181 Query: 162 SVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G + + + P E +G T+ +GFLE +N ++ EM MI Sbjct: 182 TFPNPGGLEAAGGNLLLQTAASGEAVDARPGEQGAG-TLAQGFLEGANVKAVEEMIDMIA 240 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + ++ ++ + Sbjct: 241 TQRAYELNSRVVQTADQMLQRL 262 >gi|254504490|ref|ZP_05116641.1| Flagella basal body rod protein [Labrenzia alexandrii DFL-11] gi|222440561|gb|EEE47240.1| Flagella basal body rod protein [Labrenzia alexandrii DFL-11] Length = 246 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 12/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQK 55 M+ IGL+ Q AL +L VA+NM+N +T GF++ ++ F E + + D+ Sbjct: 1 MENVHLIGLSRQSALRNQLDVVANNMANINTTGFKSQRLLFEEYLMPVAEATEFQTPDET 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 +S+V + + G+F TG +LD A+EG+ +F ++ G TRDG F + +G L Sbjct: 61 LSYVLDYQSITDFDTGAFKMTGNDLDLAIEGEGFFVVQMGDGTEAYTRDGAFVIDQNGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V++ G+ PV+ PI +D + + G IS + + + + S + Q ++ + Sbjct: 121 VTSDGR-PVMTTGG-PITFSAEDGSVEIAKDGTISTELGIRGVIRVASFEDPQELEKQGD 178 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + P P V +G LE SN +Y++ Q+I +T+ + SIT ++ + Sbjct: 179 NLYRGENPGIPQR----FNVVQGALERSNVEGVYQVTQLIEVTRAYESITKMLKDVNDLR 234 Query: 235 LEAIRNIA 242 +AI+ + Sbjct: 235 QQAIQVLG 242 >gi|225849135|ref|YP_002729299.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium azorense Az-Fu1] gi|225644492|gb|ACN99542.1| flagellar basal-body rod protein FlgG [Sulfurihydrogenibium azorense Az-Fu1] Length = 266 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L ++ N++N +TVGF+ + F +++ D Sbjct: 1 MLRALWTSASGMEAQQTNLDVISHNIANVNTVGFKRSRANFEDLIYQDIRDPGVLSSTQN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V GS I T LD A++GD +F +E P G TR G F Sbjct: 61 RVPAGIQIGLGVKVSDVAKIFSQGSLIKTDNPLDLAIQGDGFFKIEMPDGSEAFTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATM 158 ++ ++G +V+ G ++ I P+ +V G++ Q + + + Sbjct: 121 QLDNEGYIVNPEGYRL---SPNIQISAPETVINISVSPNGKVVVVRNSGGQQTTEEVGDI 177 Query: 159 GLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 LY G + P+E + +GFLE SN N + EM + Sbjct: 178 KLYRFMNQAGLKAIGQNLFKYTEASGEPIEGDPNTDGFGKITQGFLEASNVNIVEEMVNL 237 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 I + + + I ++ ML + + S Sbjct: 238 IVAQRAYEVNSKGIITADE-MLRTVSTLKS 266 >gi|17548568|ref|NP_521908.1| flagellar basal-body rod protein FlgG [Ralstonia solanacearum GMI1000] gi|17430816|emb|CAD17498.1| probable flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum GMI1000] Length = 260 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L +++N++N +T GF+ + F +++ + + S Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG D A+ G+ +F ++ P G TRDG F Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ G LV++SG YPV I +PQ V + G ++ + T L Sbjct: 121 QINAQGQLVTSSG-YPVQPA----ITVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + GV + + ++E SN N + EM MI Sbjct: 176 ANFINPAGLRSMGENLYAETEASGTANLAAPGSNGIGV-LNQNYVETSNVNVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVQTSDQMLEKLAQ 259 >gi|239817163|ref|YP_002946073.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] gi|239803740|gb|ACS20807.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] Length = 260 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L V++N++N T GF+ + F +++ + + S Sbjct: 1 MMRSLYIAKTGLDAQQTQLDVVSNNLANVGTTGFKRSRAVFEDLMYQNLRQVGGQTSDQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V +G ++ E G+ T D A+ G +F + P G TRDG F Sbjct: 61 RLPSGLQVGTGVHVVATERIHSQGNLTKTDKPTDVAINGGGFFQVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 + DG LV+ASG +PV I +P +G G I+Q G+ + + L Sbjct: 121 QTDRDGQLVTASG-FPVQPA----ITLPANATSLTIGRDGIVSITQAGQTNTVQVGQLQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P D +G+ + +G++E SN N + E+ MI Sbjct: 176 ATFLNPAGLQSKGENLYAETDASGAPNQVNPGIDGAGI-LSQGYVEASNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 ATQRAYEINSKAVQTSDQMLQRLAQ 259 >gi|307718427|ref|YP_003873959.1| flagellar hook-basal body complex protein [Spirochaeta thermophila DSM 6192] gi|306532152|gb|ADN01686.1| flagellar hook-basal body complex protein [Spirochaeta thermophila DSM 6192] Length = 280 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 112/281 (39%), Gaps = 44/281 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND------ 51 M + IG + + R+ +A+N++N D G++ F E++ ND Sbjct: 1 MIRGYYIGASGMASQLNRMDAIANNLANVDLTGYKRDTAIFKAFPELLIRRMNDRYFKIP 60 Query: 52 ---------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTR 102 + + + V + + Y E G T FALEG +F + +P+G TR Sbjct: 61 WGSIDNTPVVGKLGTGVETNEVYTVFEQGPLKETKDPFHFALEGQGFFTVLTPQGERYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-------- 154 +G F + +G LV+ G YPV+ + I+I K F V E G I Q + Sbjct: 121 NGSFILGPEGLLVTKEG-YPVVGENGL-IRI--KANNFVVDEDGRIFQNARFAEDPDRLV 176 Query: 155 ------------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE--DLSGVTVKRGFLE 200 + + + +V + ++ +S E V++GFLE Sbjct: 177 ALEENEWDETELVDRLKIVNVRRPRYLQKQGDSLWRTTRESGEAEILQEGRPKVRQGFLE 236 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 SN N + EM QMI + + + + I+ + + I + Sbjct: 237 GSNVNPVTEMVQMIEVNRAYEANQKTIETQDTLLGRLINEV 277 >gi|302343757|ref|YP_003808286.1| flagellar basal-body rod protein FlgG [Desulfarculus baarsii DSM 2075] gi|301640370|gb|ADK85692.1| flagellar basal-body rod protein FlgG [Desulfarculus baarsii DSM 2075] Length = 260 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---QKIS 57 M S A + L +++N++N +T GF+ + F +++ Sbjct: 1 MMRSLYTAATGMTAQQLNLDVISNNLANVNTTGFKKSRADFEDLMYQTLRQPGAQQAGGQ 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + +GK+ G + T +LD A+EG +F ++ + TRDG FK Sbjct: 61 MIPTGKQVGMGVRPVAIQKIWSQGDYQQTDNQLDVAIEGQGFFRIQKDNEDVYTRDGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYS 162 + ++ +V ++G V + +P+ + G ++ + + + LY+ Sbjct: 121 LNNNRDIVDSNGNLLV-----PQMTVPENATSVVIDPNGLVTALTADDEAVELGRIQLYT 175 Query: 163 VDMSQGFV------RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + RE+ +P P D G T+ +GFLE SN + + EM MI Sbjct: 176 FPNPSGLMAIGRNYFRESPASGVAVPGDPGADQFG-TLAQGFLEMSNVSVVDEMVNMIVA 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I +++ ML+ + Sbjct: 235 QRAYEANSKSITTSDQ-MLQTANQV 258 >gi|83747652|ref|ZP_00944688.1| FlgG [Ralstonia solanacearum UW551] gi|207728348|ref|YP_002256742.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum MolK2] gi|207739735|ref|YP_002258128.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum IPO1609] gi|300696915|ref|YP_003747576.1| FlgG: flagellar basal-body rod protein [Ralstonia solanacearum CFBP2957] gi|83725704|gb|EAP72846.1| FlgG [Ralstonia solanacearum UW551] gi|206591594|emb|CAQ57206.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum MolK2] gi|206593117|emb|CAQ60023.1| flagellar basal-body rod protein flgg (distal rod protein) [Ralstonia solanacearum IPO1609] gi|299073639|emb|CBJ53159.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum CFBP2957] Length = 260 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L +++N++N +T GF+ + F +++ + + S Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG D A+ G+ +F ++ P G TRDG F Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ G LV++SG YPV + +PQ + + G ++ + T L Sbjct: 121 QINAQGQLVTSSG-YPVQPA----VTVPQNATSLTIAKDGTVTVTTPGAVNSTQVGTFQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + GV + + ++E SN N + EM MI Sbjct: 176 ANFINPAGLRSMGENLYAETEASGTANLAAPGANGVGV-LNQNYVETSNVNVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVQTSDQMLEKLAQ 259 >gi|302383955|ref|YP_003819778.1| flagellar basal-body rod protein FlgF [Brevundimonas subvibrioides ATCC 15264] gi|302194583|gb|ADL02155.1| flagellar basal-body rod protein FlgF [Brevundimonas subvibrioides ATCC 15264] Length = 245 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 6/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M+ + IGL+ Q+ L + L A+N++N +T GF+ ++ VG + + SF Sbjct: 1 MENAAYIGLSRQMTLRRELDIAANNIANAETTGFKVEQLLLGTEVGQRARNDAVRPGASF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTRDGRFKVTDDGSLVSA 117 V G+ TG LDFA++G+ +F ++ G TRDG F + G LV+ Sbjct: 61 VLDNGVGRDFGQGALNETGRTLDFAIDGEGAFFKIQDGAGEAYTRDGAFTIDPTGQLVTK 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 SG PVL PI + +V E G ISQ G + T+ L D + ++ G+ Sbjct: 121 SG-LPVLGDGG-PIVVDPARGALSVAEDGTISQGGAALGTLSLARFDN-LAVLSKDGDGL 177 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 N P D +GV V++G LE SN N++ E+ +I +T+ + T +I+ + + Sbjct: 178 YRNASNAPALDATGVQVRQGMLEGSNVNTLVEITNLIEITRAYERATKMIENVQDLSRRS 237 Query: 238 IRNIA 242 + + Sbjct: 238 VERLG 242 >gi|296127366|ref|YP_003634618.1| flagellar basal-body rod protein FlgG [Brachyspira murdochii DSM 12563] gi|296019182|gb|ADG72419.1| flagellar basal-body rod protein FlgG [Brachyspira murdochii DSM 12563] Length = 264 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 108/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + ++ + T+A+N++N +T+G++ ++ F +++ + Sbjct: 1 MVRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V S + GS +TG +LD ALEG+ +F + P G + TRDG F Sbjct: 61 VRPVGLQTGLGVKSASTQKMFDQGSLQATGNKLDLALEGEGFFQVLMPDGSVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ +G +V+++G V I P+ E ++ +G +S I + Sbjct: 121 KIDANGQMVTSNGYRLV-----PEIVFPENFLVEQISISREGVVSVKIGDENDPVEIGQI 175 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPL-EDLSGV----TVKRGFLEDSNANSMYEMGQM 213 L+ G + ++ I P E G + +GF+E SN + EM M Sbjct: 176 TLHRFINQPGLLSIGDNLYKETIASGPAFEGEPGANGFPRIHQGFVEMSNVKVVDEMVDM 235 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + ++ + + Sbjct: 236 IVAQRAYEMNSKAVQTSDNLLATVVN 261 >gi|319944133|ref|ZP_08018411.1| flagellar basal-body rod protein FlgG [Lautropia mirabilis ATCC 51599] gi|319742627|gb|EFV95036.1| flagellar basal-body rod protein FlgG [Lautropia mirabilis ATCC 51599] Length = 260 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 100/262 (38%), Gaps = 32/262 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ ++ N++N T G++ + F +++ + Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISHNLANVSTNGYKRSQAVFEDLIYQNMRQVGAQSSADT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V G+ T D A+ G +F L+ P G TRDG F Sbjct: 61 QLPTGLQLGTGVRPVATSRLFTQGNLQQTSNSFDLAISGHGFFQLQMPDGTTGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 G LV+++G S PI IP VG G +S I + L Sbjct: 121 HPDAQGQLVNSNGM-----PLSPPITIPPGTRDVTVGNDGTVSVTIAGQEGVTQIGQIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G V +E+ TP + +G+ +++G+LE SN N + E+ MI Sbjct: 176 ATFQNAAGLDPQGQNVFKESDASGTPTAATPGVNGAGL-LQQGYLETSNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLE 236 + + + I +++ + Sbjct: 235 QTQRAYEINSKAIQTSDQMLAR 256 >gi|254462007|ref|ZP_05075423.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium HTCC2083] gi|206678596|gb|EDZ43083.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium HTCC2083] Length = 237 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ + L Q L + +S +A N++N +T G+R + FSEV+ + +S Sbjct: 1 MENASYTTLTRQSGLMREMSVIASNIANANTTGYRQEGLIFSEVIKGESD--APSLSMAT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G+ TG D A++GD +F +++P G L+R G F + G LV+ G Sbjct: 59 ARARATSLAPGTITQTGGPYDVAIDGDGFFQIQTPGGTRLSRAGHFMPNNQGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ IPQ ++ G +S KG+++ +G+ +R + + Sbjct: 118 YRVLDAGGAPLGIPQGTGKISISADGTLSSKGQLLGQLGIVQPSTGTQILREDGVHFRAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P D V++GFLE SN N M ++ +MI + + + + + + + A+R Sbjct: 178 GPTEPNFD---ARVRQGFLEGSNVNPMSQIARMIEVQRAYEMGQSFAETENERLRNAVRT 234 Query: 241 I 241 I Sbjct: 235 I 235 >gi|300024616|ref|YP_003757227.1| flagellar basal-body rod protein FlgF [Hyphomicrobium denitrificans ATCC 51888] gi|299526437|gb|ADJ24906.1| flagellar basal-body rod protein FlgF [Hyphomicrobium denitrificans ATCC 51888] Length = 240 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ +GL+AQLAL++RL TVA+N++N T G+R ++ F EV+ +SFV+ Sbjct: 1 MQSNIYVGLSAQLALQRRLDTVANNVANAGTAGYRAEQMSFEEVLSKSG---QTAVSFVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ +LS E G T LD A+ GDAW A+++P G TRDGR ++ DG L + SG Sbjct: 58 QGRTHLSTEGGEITQTDNPLDIAVRGDAWLAIQTPTGPAYTRDGRMQMRADGVLTNLSGD 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P LD P+Q+ + + G I Q G + GLY + R + + + Sbjct: 118 -PFLDAGGSPVQLDPDGGRITINKAGTIVQDGNNLGAFGLYRMPQGANLTRGHGASVITD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P D V +G++E SN N + EM + L + F++++ ++ E E S+ ++++ Sbjct: 177 QAAVPEIDFLRTGVVQGYVEKSNVNPILEMTHLTTLQRSFDAVSNVLRETESSLQDSLKT 236 Query: 241 IA 242 IA Sbjct: 237 IA 238 >gi|322421663|ref|YP_004200886.1| flagellar basal-body rod protein FlgF [Geobacter sp. M18] gi|320128050|gb|ADW15610.1| flagellar basal-body rod protein FlgF [Geobacter sp. M18] Length = 238 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L L+ ++RL +++N++N T GF+ +++F ++ ++KN + + + Sbjct: 1 MNAGMYAALTGNLSAQRRLDVISNNLANASTTGFKADQIQFESILASVKNSTEGPV--FS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G T LD ALEGD +F + +P+G TR G F G LV+A G Sbjct: 59 NDRYSTDFSSGGLQRTDNALDVALEGDGFFVVNTPQGTAYTRQGNFHRGPGGKLVTADGY 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +V + +G G++S G V+ + + + N P Sbjct: 119 EVQGGGGTVTLN---GGSKIEIGSNGQVSVDGNVVGNIAVVDFPKPYALEKAGNGLYLPA 175 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P T S VK+G+LE SN + EM +MI ++ F + + A + Sbjct: 176 NPQTATTA-STAGVKQGYLESSNVKVVVEMARMIEASRYFEICAKAVKTYDDLNARAAND 234 Query: 241 IA 242 + Sbjct: 235 LG 236 >gi|149927800|ref|ZP_01916051.1| flagellar basal body rod protein FlgG [Limnobacter sp. MED105] gi|149823422|gb|EDM82653.1| flagellar basal body rod protein FlgG [Limnobacter sp. MED105] Length = 260 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 30/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + +L +++N++NT T GF+ + F +++ Sbjct: 1 MMRSLWIAKTGLDAQQTQLDVISNNLANTATNGFKRSRAVFEDLLYQTLRQPGAQTTEQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + G+ TG LD A+ G +F ++ P G TRDG Sbjct: 61 QVPSGLQIGTGVKPVSTVRNFAQGNLQQTGNTLDVAINGQGFFQVQMPDGTTSYTRDGSI 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ +G+LV+++G YPVL P+ IPQ + ++ + G +S + + + + L Sbjct: 121 QIDANGTLVTSNG-YPVLG----PVTIPQGVQEISISQDGVVSAVVQGQVQPQELGQIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 S G + S P + ++G V +GF+E SN N + E+ +I Sbjct: 176 ASFVNPAGLFSMGQNLYSETAASGAPTQAVAGTNGVGFVSQGFVETSNVNVVEELVGLIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + Sbjct: 236 AQRAYEINSKAISTSDQMLQRL 257 >gi|90422600|ref|YP_530970.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisB18] gi|90104614|gb|ABD86651.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB18] Length = 243 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+AQ++LE+RL T+A+NM+N T FR VKF A+ Q ++F Sbjct: 1 MQSALYVSLSAQVSLEKRLETIANNMANMKTTAFRADAVKFET---ALSRAASQPVAFAT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G ++S+ GS TG LD A+ G++W P G + TRDGR +++ G L + +G Sbjct: 58 PGDNFISRAAGSVTQTGNNLDVAVVGNSWMGFTGPSGPVYTRDGRMQISSTGELQTITG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PI + + G ISQ + +GL+ + R NSG+ P+ Sbjct: 117 YPVLDAGGTPIIVDPDAGPLTISRNGTISQGTNEVGMLGLFEIAADAKLARFANSGVVPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 T + D ++G++E SN + + EM Q++ T+ F S+++LI+ +E +M AIR Sbjct: 177 RGATAVVDFINTGFQQGYVEGSNVDPLSEMTQLMTATRAFQSVSSLIESSEGTMQNAIRT 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|291484181|dbj|BAI85256.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. natto BEST195] Length = 264 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 24/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++V + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 SG + STG LD A++GD +F +++ G TR G F + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSV 163 + G+LV+ G Y VL+M I+IP + F++G G++S K + +G+ + Sbjct: 121 DNTGTLVTGDG-YHVLNMNGGTIKIPTDAQSFSIGSDGKVSIVDAEGKTQDGGQIGIVTF 179 Query: 164 DMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 S G + RE+ D +K GFLE SN + E +MI Sbjct: 180 ANSDGLDKIGRNLYRESLNSGTASAANQPGDGGTGALKSGFLEMSNVDLTDEFTEMIVAQ 239 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F S + +I +++ + E + Sbjct: 240 RGFQSNSKIITTSDEILQELVN 261 >gi|163852465|ref|YP_001640508.1| flagellar basal body rod protein FlgF [Methylobacterium extorquens PA1] gi|163664070|gb|ABY31437.1| flagellar basal body rod protein [Methylobacterium extorquens PA1] Length = 246 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L GS + AL GDA+ +++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGSVEPDSNPMHVALRGDAFLTVQTPQGLRYTRNGAFELDATGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G + V PI I Q++ + G IS + + L + +Q + Sbjct: 121 TSDG-HAVQGDGG-PITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFPNAQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S P P G ++ G LE SN + EM +++ + + ++ ++++I + Sbjct: 179 LFSSEAPARPA--GPGAHLEPGALERSNVKPVVEMTRLMDVNRTYSMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|297543693|ref|YP_003675995.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841468|gb|ADH59984.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 251 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 116/253 (45%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDID 53 M + + + + + +N++N +T G++ V S G D Sbjct: 1 MLRGLYAASSGMVTQTKIMDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNVPPD 60 Query: 54 QKIS----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 KI + + + E GSF T +LDFA++G+ +F +++P G TRDG F ++ Sbjct: 61 GKIGKMDYGILIDTFHTNFEEGSFTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLS 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 +DG LV+ G Y V PI++ Q D +V E G I G+++ + + D G Sbjct: 121 NDGYLVTQEG-YIVQGENG-PIELSQGD--ISVDEMGNIKNNGQLVDRLRIVDFDNYDGL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N+ + + +K+GFLE SN NS+ EM MI + + + S ++ Sbjct: 177 RKEGNNLFFIDNSANVQVIPATGRIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIA 236 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 237 FDETLGKAVNEVG 249 >gi|188582487|ref|YP_001925932.1| flagellar basal body rod protein FlgF [Methylobacterium populi BJ001] gi|179345985|gb|ACB81397.1| flagellar basal body rod protein [Methylobacterium populi BJ001] Length = 246 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQAALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G G + AL GDA+ A+++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDGNPMHVALRGDAFLAVQTPQGVRYTRNGAFELNAQGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G Y V PI I Q++ ++ G +S + + L + Q + Sbjct: 121 TSDG-YAVQGDGG-PITIGQQETGLSIAPDGTVSTNLGIRGRLRLVTFANPQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S + P G ++ G LE SN + EM +++ + + + ++++I + Sbjct: 179 LFSSDAPARAA--GPGQHLEPGALERSNVKPVVEMTRLMDVNRTYTMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|254562217|ref|YP_003069312.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] gi|254269495|emb|CAX25461.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens DM4] Length = 246 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G + AL GDA+ A+++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G + V PI I Q++ + G IS + + L + +Q + Sbjct: 121 TSDG-HAVQGDGG-PITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S P P +GV ++ G LE SN + EM +++ + + ++ ++++I + Sbjct: 179 LFSSEAPARPA--GAGVHLEPGALERSNVKPVVEMTRLMDVNRTYSMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|299068734|emb|CBJ39973.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum CMR15] Length = 260 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L +++N++N +T GF+ + F +++ + + S Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG D A+ G+ +F ++ P G TRDG F Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ G LV++SG YPV + +PQ V + G ++ + T L Sbjct: 121 QINAQGQLVTSSG-YPVQPA----VTVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + GV + + ++E SN N + EM MI Sbjct: 176 ANFINPAGLRSMGENLYAETEASGTANLAAPGANGVGV-LNQNYVETSNVNVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVQTSDQMLEKLAQ 259 >gi|218531221|ref|YP_002422037.1| flagellar basal body rod protein FlgF [Methylobacterium chloromethanicum CM4] gi|218523524|gb|ACK84109.1| flagellar basal body rod protein [Methylobacterium chloromethanicum CM4] Length = 246 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSARFQEYLMPVASADSFQRTDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G + AL GDA+ A+++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G + V PI I Q++ + G IS + + L + +Q + Sbjct: 121 TSDG-HAVQGDGG-PITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S P P G ++ G LE SN + EM +++ + + ++ ++++I + Sbjct: 179 LFSSEAPARPA--GPGAHLEPGALERSNVKPVVEMTRLMDVNRTYSMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|221309506|ref|ZP_03591353.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. 168] gi|221313830|ref|ZP_03595635.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318753|ref|ZP_03600047.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. JH642] gi|221323025|ref|ZP_03604319.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. SMY] gi|255767369|ref|NP_389511.2| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. subtilis str. 168] gi|321315395|ref|YP_004207682.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] gi|239938626|sp|P23446|FLGG_BACSU RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|142919|gb|AAA22444.1| flgG [Bacillus subtilis] gi|225184996|emb|CAB13502.2| flagellar hook protein [Bacillus subtilis subsp. subtilis str. 168] gi|320021669|gb|ADV96655.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] Length = 264 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 64/263 (24%), Positives = 119/263 (45%), Gaps = 26/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++V + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 SG + STG LD A++GD +F +++ G TR G F + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSV 163 + G+LV+ G Y VL+M I+IP + F++G G++S K + +G+ + Sbjct: 121 DNTGTLVTGDG-YHVLNMNGGTIKIPTDAQSFSIGSDGKVSIVDAEGKTQDGGQIGIVTF 179 Query: 164 DMSQGFVRRENSGI-------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 S G + ++ + + P + +G +K GFLE SN + E +MI Sbjct: 180 ANSDGLDKIGSNLYRESLNSGTASAANQPGDGGTGA-LKSGFLEMSNVDLTDEFTEMIVA 238 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F S + +I +++ + E + Sbjct: 239 QRGFQSNSKIITTSDEILQELVN 261 >gi|83858805|ref|ZP_00952327.1| flagellar basal-body rod protein FlgF [Oceanicaulis alexandrii HTCC2633] gi|83853628|gb|EAP91480.1| flagellar basal-body rod protein FlgF [Oceanicaulis alexandrii HTCC2633] Length = 244 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 6/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF 58 M + IGL QL L +++ VA+N++N +T GF+ ++ + A D + F Sbjct: 1 MDNTMLIGLTRQLTLRRQMDVVANNIANANTQGFKAERMMLEPDTSMRARHQDGPNRARF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V G+ T LD AL+GD +F LE+ G TRDG F ++ G LV+ Sbjct: 61 VDEWAMGRDFSQGALTHTSRPLDLALQGDGFFMLETDAGERFTRDGAFTLSPQGELVAGD 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS-GI 177 G VLD PI + ++GE G ++Q G+ IA +G+ + ++ + Sbjct: 121 GA-RVLDAGGAPIILDPAAGQISIGETGIVTQNGQQIAQVGVVRFADQGVLNKTGDNRYV 179 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 +P +EDL VK+GFLE SN M E+ M+ +++ + S++ +I + ++ +A Sbjct: 180 APEDAERVIEDLP--QVKQGFLESSNVRPMLEITSMMEVSRAYASVSRMIKDTDELSRKA 237 Query: 238 IRNIA 242 I + Sbjct: 238 IDRLG 242 >gi|152990359|ref|YP_001356081.1| flagellar basal-body rod protein FlgG [Nitratiruptor sp. SB155-2] gi|151422220|dbj|BAF69724.1| flagellar basal-body rod protein FlgG [Nitratiruptor sp. SB155-2] Length = 266 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 33/271 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L V++N++N +T GF+ + F +++ D Sbjct: 1 MIRALWTSASGMQAQQTNLDVVSNNIANVNTTGFKQSRANFEDLIYQNIKDPGVENGNGN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRF 106 Q V GS T +LD A++G +F +E P G TR G F Sbjct: 61 RLPTGIQIGLGVRVADVAKIFSQGSLKHTERDLDVAIQGKGFFKIELPGGGEAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATM 158 ++ ++G+LV+ G Y VL ++ I P+ ++ G++ Q + + + Sbjct: 121 QIDNEGNLVTDQG-YKVLP--NIQINAPETLVGISISPNGKVVAVRSEGVGQTTEELGQL 177 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY G + + I P + G + +GFLE SN N + EM Sbjct: 178 KLYRFINPAGLKAIGGNLFVQSEASAEPIEGDPDTNGFG-KLSQGFLEMSNVNIVEEMVN 236 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +I + + + I ++ ML + + S Sbjct: 237 LIVAQRAYEMNSKGITTADE-MLRTVATLKS 266 >gi|83312595|ref|YP_422859.1| flagellar basal body rod protein [Magnetospirillum magneticum AMB-1] gi|82947436|dbj|BAE52300.1| Flagellar basal body rod protein [Magnetospirillum magneticum AMB-1] Length = 253 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 7/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 MQ + I L+ Q AL +++ VA+NM+N +T F+ ++ F E + ++ + K+S Sbjct: 8 MQNTSYIALSRQAALWRQMEVVANNMANANTPAFKGEEMMFREFLVPTRSSERAVGGKLS 67 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 FV G T LDFAL GD +F +E+ G+ R+G F++ G LV++ Sbjct: 68 FVQDVGVLRDTREGPLTKTDNPLDFALHGDGYFQIETEAGMRYARNGHFRLDQTGMLVNS 127 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G Y V+D PI + V G +S + +A + + + Q + +S Sbjct: 128 QG-YAVMDDRDQPIVFAPNETRVEVASDGTVSTENGRVARLKVVKFENDQQMRKAGDSLY 186 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P E + V +G +E+SN + EM +M + +++ + ++D L+A Sbjct: 187 ETTQEP---EVVQSPHVAQGMMEESNVQPVLEMTRMTQILREYQGVQKMLDAEHDRQLKA 243 Query: 238 IRNIA 242 I+ + Sbjct: 244 IQALG 248 >gi|328948268|ref|YP_004365605.1| flagellar basal-body rod protein FlgF [Treponema succinifaciens DSM 2489] gi|328448592|gb|AEB14308.1| flagellar basal-body rod protein FlgF [Treponema succinifaciens DSM 2489] Length = 266 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 28/259 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVV------------ 45 M + IG + A + RL T+++N++N DT GF+ +FSE++ Sbjct: 1 MIRGWYIGASGMNAQQNRLDTISNNLANVDTTGFKKEIPVNKEFSELLLRRTVADGVYKT 60 Query: 46 ----GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + I V + + Y GSF ST T+ D AL G+ +F +++P G T Sbjct: 61 PFGSADAVSIIGSIGLGVETNELYTDFSQGSFKSTDTKTDMALGGEGFFTVQTPAGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG 159 R+G F + +G L++ G YPVL I +P F V + G I + +++ + Sbjct: 121 RNGNFHLGKEGILLTKEG-YPVLGENGA-IHVPND--KFFVNQDGMIYTNEDNELVDRIK 176 Query: 160 LYSVDMSQGFVRRENSGISPN---IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + + + ++ +S + N E + +G+ E SN N + EM QMI + Sbjct: 177 VVRFENERFLKKQGSSLWNSNEISGDAYIAEGDERPRLLQGYTEASNVNVVNEMVQMIEV 236 Query: 217 TQKFNSITTLIDENEKSML 235 + + + + + M Sbjct: 237 NRAYEANQKSVQTEDSMMD 255 >gi|323697472|ref|ZP_08109384.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. ND132] gi|323457404|gb|EGB13269.1| flagellar basal-body rod protein FlgG [Desulfovibrio desulfuricans ND132] Length = 260 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S +A++ ++ T+++N++N T F+ + +F +++ + Sbjct: 1 MMRSLWTSATGMIAMQTQIDTLSNNLANVSTTAFKKSRAEFEDLMYQTLKIAGGENADGT 60 Query: 53 DQKISF-VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + G +S G F +TG LD A+EG+ +F + + TRDG F+ Sbjct: 61 QTPVGMQIGMGVRPVSVHKFFTQGDFQNTGNPLDMAIEGEGFFQVMVNGDEVYTRDGSFE 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIAT--MGLYS 162 + DG +V+A G YP+ +P + ++ E G IS G V+AT + LY Sbjct: 121 LDSDGRVVTA-GGYPLQPEF----TVPPETSSISISETGTISALDKDGTVLATADIDLYR 175 Query: 163 VDMSQGFV------RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + RE+ + TP +D G T+ +GFLE SN + EM +I Sbjct: 176 FQNPAGLIATGRNFYRESDASGVAVAGTPGDDNYG-TIAQGFLEGSNVEMVDEMVGLIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F + I ++ + AI Sbjct: 235 QRAFEINSKAITTSDGMLQTAIN 257 >gi|254292906|ref|YP_003058929.1| flagellar basal-body rod protein FlgF [Hirschia baltica ATCC 49814] gi|254041437|gb|ACT58232.1| flagellar basal-body rod protein FlgF [Hirschia baltica ATCC 49814] Length = 255 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 16/255 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISF 58 M S IGL+ Q L +++ A+N++N +T GF+ + E+ A D I+F Sbjct: 1 MDNSLAIGLSTQQLLRKKMDVTANNLANMNTTGFKVEHLVNHEISDRPARATDKPHDITF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + GS TG LD A++G+ +F +E+ G I TRDG F + DG LV+ Sbjct: 61 TQGWQLQRDMNNGSIAQTGNPLDVAIDGNGFFEVEAENGDIFYTRDGEFSMNPDGMLVTR 120 Query: 118 SGKYP-----VLDM-----ASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 +G VLD VPI + + + + G I Q G + + L + ++ + Sbjct: 121 NGYLLRGEGEVLDGEKLLANGVPIALNPEGGEIVINKDGSIMQDGAQLGQLKLKTFELPE 180 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + N+ I + T+ +GF+E SN +++ EM QMI +++ + S+ LI Sbjct: 181 ALEKVGNNLY---ISGEQEPIDANATLAQGFVESSNVSAIVEMTQMIEISRAYQSVAKLI 237 Query: 228 DENEKSMLEAIRNIA 242 + +AI +A Sbjct: 238 SNSNDMREKAINKLA 252 >gi|62317080|ref|YP_222933.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 1 str. 9-941] gi|83269073|ref|YP_418364.1| flagellar basal body rod protein FlgF [Brucella melitensis biovar Abortus 2308] gi|189022347|ref|YP_001932088.1| flagellar basal body rod protein FlgF [Brucella abortus S19] gi|225685989|ref|YP_002733961.1| flagellar basal body rod protein FlgF [Brucella melitensis ATCC 23457] gi|237816642|ref|ZP_04595634.1| flagellar basal body rod protein FlgF [Brucella abortus str. 2308 A] gi|254691431|ref|ZP_05154685.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6 str. 870] gi|254695270|ref|ZP_05157098.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3 str. Tulya] gi|254698369|ref|ZP_05160197.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2 str. 86/8/59] gi|254731814|ref|ZP_05190392.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4 str. 292] gi|256256617|ref|ZP_05462153.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9 str. C68] gi|256262885|ref|ZP_05465417.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|260544321|ref|ZP_05820142.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260757049|ref|ZP_05869397.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6 str. 870] gi|260759580|ref|ZP_05871928.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4 str. 292] gi|260762824|ref|ZP_05875156.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2 str. 86/8/59] gi|260882859|ref|ZP_05894473.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9 str. C68] gi|261215636|ref|ZP_05929917.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3 str. Tulya] gi|297249974|ref|ZP_06933675.1| flagellar basal-body rod protein FlgF [Brucella abortus bv. 5 str. B3196] gi|62197273|gb|AAX75572.1| FlgF, flagellar basal-body rod protein FlgF [Brucella abortus bv. 1 str. 9-941] gi|82939347|emb|CAJ12294.1| Flagellar basal body rod protein [Brucella melitensis biovar Abortus 2308] gi|189020921|gb|ACD73642.1| Flagellar basal body rod protein [Brucella abortus S19] gi|225642094|gb|ACO02007.1| flagellar basal body rod protein [Brucella melitensis ATCC 23457] gi|237787455|gb|EEP61671.1| flagellar basal body rod protein FlgF [Brucella abortus str. 2308 A] gi|260097592|gb|EEW81466.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260669898|gb|EEX56838.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 4 str. 292] gi|260673245|gb|EEX60066.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 2 str. 86/8/59] gi|260677157|gb|EEX63978.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 6 str. 870] gi|260872387|gb|EEX79456.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 9 str. C68] gi|260917243|gb|EEX84104.1| flagellar basal body rod protein FlgF [Brucella abortus bv. 3 str. Tulya] gi|263092722|gb|EEZ16931.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|297173843|gb|EFH33207.1| flagellar basal-body rod protein FlgF [Brucella abortus bv. 5 str. B3196] gi|326410315|gb|ADZ67379.1| flagellar basal body rod protein FlgF [Brucella melitensis M28] gi|326553608|gb|ADZ88247.1| flagellar basal body rod protein FlgF [Brucella melitensis M5-90] Length = 243 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G VS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDPVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ PI + + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|170747255|ref|YP_001753515.1| flagellar basal body rod protein FlgF [Methylobacterium radiotolerans JCM 2831] gi|170653777|gb|ACB22832.1| flagellar basal body rod protein [Methylobacterium radiotolerans JCM 2831] Length = 246 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G+++Q+AL++ L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSSQMALQRELDVIANNMANVSTTGFKARNTRFEEYLMPVASADSFARPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G TG L+ A++G A+ A++SP+G TR+G F++ G+LV Sbjct: 61 LSYVIDQGTTLDLGQGPIEQTGNPLNVAVKGSAFIAVQSPQGERYTRNGAFELDAQGTLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G Y V+ PI I ++ +G G +S + + L + Q + Sbjct: 121 TSDG-YKVVGEGG-PISINPQETGLAIGPDGTVSTNLGIRGRIKLVTFANPQRLTNEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + P ++ LE SN + EM +++ + + + ++++I + Sbjct: 179 LYASPEPARAA--GIDGRLEPESLERSNVRPVIEMTRLMDVNRSYAMVSSMISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|187926952|ref|YP_001893297.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12J] gi|241665281|ref|YP_002983640.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] gi|187728706|gb|ACD29870.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12J] gi|240867308|gb|ACS64968.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] Length = 260 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L +++N++N +T GF+ + F +++ + + S Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG D A+ G+ +F ++ P G TRDG F Sbjct: 61 TLPSGMQIGTGVRIVATERLHTQGNLQQTGNATDVAINGNGFFQVQMPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 +V G LV++SG YP+ I +PQ F+VG+ G + S + T L Sbjct: 121 QVNAQGQLVTSSG-YPIQPA----ITVPQNATSFSVGKDGVVTVTTPGSVNNTQVGTFQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + GV + + ++E SN N + EM MI Sbjct: 176 ANFINPAGLRSMGENLYAETEASGTANLANPGSNGVGV-LNQNYVETSNVNVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + + +++ + + Sbjct: 235 QTQRAYEINSKSVQTSDQMLEKL 257 >gi|220934396|ref|YP_002513295.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. HL-EbGR7] gi|219995706|gb|ACL72308.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. HL-EbGR7] Length = 263 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 107/268 (39%), Gaps = 32/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + R+S +++N++N +T GF+ + F +++ + + Sbjct: 1 MNKALWIAKTGLDAQQTRMSVISNNLANVNTTGFKKGRAVFQDLIYQTVRQAGAQAAQDT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ G+ T LD A+EG +F + P G I TRDG F Sbjct: 61 ELPSGLMLGTGVRTVATEKMFTQGNVTQTENALDMAIEGRGFFQILMPDGNIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ DG LV++ G Y V I IP+ V E G +S V+ + L Sbjct: 121 QLNSDGQLVTS-GGYEVDPG----IVIPEGALSVTVAEDGTVSATVAGNVAPIVVGNLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + P D G + +GFLE SN N++ E+ MI Sbjct: 176 ADFINPAGLQPIGQNLFIETAASGAPQAGNPGLDGRG-RLLQGFLESSNVNTVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + I ++ + N+ Sbjct: 235 ETQRAYEMNSKAISTADQMLQYVNNNLG 262 >gi|323704840|ref|ZP_08116417.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535766|gb|EGB25540.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 108/253 (42%), Gaps = 18/253 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVG--------AIK 49 M + +A ++ + +++N++N +T G++ V F + + Sbjct: 1 MLRGLYTASSGMIAQQKIVDVLSNNIANVNTAGYKKDTVTTMAFPDYMVTRNGGDNVPYN 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 +I V + G T +LDFA++G +F + +P G+ TRDG F + Sbjct: 61 GNIGTMDYGVLVETFNTNFSEGDIEKTDGKLDFAIDGSGFFTVSTPSGVRYTRDGSFTLN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 ++G LV+ G Y VL PIQ+ D +V E G IS G+V+ + + Sbjct: 121 NNGYLVTKDGYY-VLGQNG-PIQLNNGD--ISVDESGNISVNGQVVDKLNIVDFANYNTL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N+ + VK+G+LE SN N + EM MI + + + + Sbjct: 177 RKEGNNLFFTT---GGQAIPATSKVKQGYLEGSNVNPVDEMVTMISAMRTYEANQKSVSA 233 Query: 230 NEKSMLEAIRNIA 242 ++++ +++ + Sbjct: 234 FDETLDKSVNEVG 246 >gi|39912|emb|CAA39528.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 264 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 64/263 (24%), Positives = 119/263 (45%), Gaps = 26/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++V + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 SG + STG LD A++GD +F +++ G TR G F + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGTAYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSV 163 + G+LV+ G Y VL+M I+IP + F++G G++S K + +G+ + Sbjct: 121 DNTGTLVTGDG-YHVLNMNGGTIKIPTDAQTFSIGSDGKVSIVDAEGKTQDGGQIGIVTF 179 Query: 164 DMSQGFVRRENSGI-------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 S G + ++ + + P + +G +K GFLE SN + E +MI Sbjct: 180 ANSDGLDKIGSNLYRESLNSGTASAANQPGDGGTGA-LKSGFLEMSNVDLTDEFTEMIVA 238 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F S + +I +++ + E + Sbjct: 239 QRGFQSNSKIITTSDEILQELVN 261 >gi|300693340|ref|YP_003749313.1| flgg: flagellar basal-body rod protein [Ralstonia solanacearum PSI07] gi|299075377|emb|CBJ34672.1| FlgG: Flagellar basal-body rod protein [Ralstonia solanacearum PSI07] Length = 260 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L +++N++N +T GF+ + F +++ + + S Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG D A+ G+ +F ++ P G TRDG F Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDAAINGNGFFQVQMPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 ++ G LV++SG YPV I +PQ + + G + S + T L Sbjct: 121 QINAQGQLVTSSG-YPVQPA----ITVPQNATSLTIAKDGVVTVTTPGSVNSTQVGTFQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + GV + + ++E SN N + EM MI Sbjct: 176 ANFINPAGLRSMGENLYAETEASGTANLAAPGANGIGV-LNQNYVETSNVNVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVQTSDQMLEKLAQ 259 >gi|289577406|ref|YP_003476033.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter italicus Ab9] gi|289527119|gb|ADD01471.1| flagellar basal-body rod protein FlgF [Thermoanaerobacter italicus Ab9] Length = 251 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDID 53 M + + + + + +N++N +T G++ V S G D Sbjct: 1 MLRGLYAASSGMVTQIKIMDVLTNNLANVNTTGYKRDIVITSSFPNFEVTRYGGDNIPPD 60 Query: 54 QKIS----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 KI + + + E GS T +LDFA++G+ +F +++P G TRDG F ++ Sbjct: 61 GKIGKMDYGILIDTFHTNFEEGSLTQTNGKLDFAIDGNGFFVIDTPNGQRYTRDGSFVLS 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 +DG LV+ G Y V PI++ Q D +V E G I G+++ + + D G Sbjct: 121 NDGYLVTQEG-YIVQGENG-PIELLQGD--ISVDEMGNIINNGQLVDRLRIVDFDNYDGL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N+ + + +K+GFLE SN NS+ EM MI + + + S ++ Sbjct: 177 RKEGNNLFFIDNSANVQVIPATGRIKQGFLEQSNVNSVKEMVNMISVMRNYESNQKVVIA 236 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 237 FDETLGKAVNEVG 249 >gi|255262463|ref|ZP_05341805.1| flagellar basal-body rod protein FlgF [Thalassiobium sp. R2A62] gi|255104798|gb|EET47472.1| flagellar basal-body rod protein FlgF [Thalassiobium sp. R2A62] Length = 238 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 118/241 (48%), Gaps = 5/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S L Q L + + +A+N++N T G+R + FSE V A+ D IS Sbjct: 1 MENSTYATLTRQSGLMKEMRVIANNIANAATSGYRQEGITFSEYVAAVDQD-HSSISMAT 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G TG D A+EG+ +F +++P G LTR G F +G LV+A G Sbjct: 60 ANVRETSILQGGLTKTGGTFDLAIEGEGYFLVQTPDGDRLTRAGAFTPNSNGDLVTADG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD P+ IP + + G IS G I +G+ + + +R++ + Sbjct: 119 YPVLDSGGAPVFIPTGADSIGIAADGTISAGGTPIGQVGIVQPNDPKELLRQDGVMFN-- 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+ + + +GFLEDSN + + ++ +MI + + + + +D+ ++ + +++ Sbjct: 177 -APSGFDAAPDARLVQGFLEDSNVDPILQISRMIEVQRAYELGQSFLDKEDERIRNVLQS 235 Query: 241 I 241 + Sbjct: 236 M 236 >gi|296330843|ref|ZP_06873318.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674361|ref|YP_003866033.1| flagellar hook protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151848|gb|EFG92722.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412605|gb|ADM37724.1| flagellar hook protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 264 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 24/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F ++V + + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMVSQTIAGGSAAGATIG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 SG + STG LD A++GD +F +++ GI TR G F + Sbjct: 61 GTNSKQIGLGSSSGTIDTIHSTSATQSTGRTLDLAIDGDGYFRIDTGDGIAYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSV 163 + G+LV+ G Y VL+M IQIP + F++G G++S + + +G+ + Sbjct: 121 DNTGTLVTGDG-YHVLNMNGGTIQIPTDAQSFSIGSDGKVSIVDAGGQTQDGGQIGIVTF 179 Query: 164 DMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 S G + RE+ D ++K GFLE SN + E +MI Sbjct: 180 ANSDGLDKVGSNLYRESLNSGTASAANQPGDGGTGSLKSGFLEMSNVDLTDEFTEMIVAQ 239 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F S + +I +++ + E + Sbjct: 240 RGFQSNSKIITTSDEILQELVN 261 >gi|255021356|ref|ZP_05293404.1| Flagellar basal-body rod protein flgG [Acidithiobacillus caldus ATCC 51756] gi|254969219|gb|EET26733.1| Flagellar basal-body rod protein flgG [Acidithiobacillus caldus ATCC 51756] Length = 261 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S + + ++ +A+N++N +T GF+ + F +++ GA + Sbjct: 1 MMRSLYVAATGLEGEQTKMDVIANNLANVNTTGFKQSRAVFQDLLYQNLRQPGAQSSQTT 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q S + G G+ STG LD + G +F + P G TRDG F Sbjct: 61 QYPSGLQLGTGVRVVATERLMTQGNLTSTGNALDLGINGQGFFQIMQPDGTIAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ + G LV+++G P+ IP + +G G +S + + + ++ L Sbjct: 121 QLNNQGQLVTSNGYLL-----QPPVTIPPNAQSITIGTDGTVSVVLPGQSQPQQVGSIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ P + G +V++G+LE SN N + E+ MI Sbjct: 176 ANFINPTGLQSIGDNLYLQTGSSGAPQTGQPTLNGLG-SVQQGYLESSNVNVVSELVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + ++ + AI+N+ Sbjct: 235 ATQRAYEINSKAVSTSDSMLGYAIQNL 261 >gi|300871597|ref|YP_003786470.1| flagellar basal-body rod protein FlgG [Brachyspira pilosicoli 95/1000] gi|300689298|gb|ADK31969.1| flagellar basal-body rod protein, FlgG [Brachyspira pilosicoli 95/1000] Length = 264 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 108/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + ++ + T+A+N++N +T+G++ ++ F +++ + Sbjct: 1 MLRSLWTAASGMNGMQFKTDTIANNLANVNTIGYKKVRADFEDLIYQNLKIQGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V S + GS +TG +LD ALEG+ +F + P G + TRDG F Sbjct: 61 VTPVGLQTGLGVKSAATQKMFDQGSLQATGNKLDLALEGEGFFQVLMPDGSVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 KV +G LV+++G V I P+ E N+ +G +S + + + Sbjct: 121 KVDANGQLVTSNGYKLV-----PEIIFPENFLVEKINISREGVVSVTIGDENEPVELGNI 175 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQM 213 L+ G + ++ I P + + +GF+E SN + EM M Sbjct: 176 TLHRFINQAGLLSIGDNLYKETIASGPAFEGEAGSKGFPRIHQGFVEMSNVKVVDEMVDM 235 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + ++ + + Sbjct: 236 IVAQRAYEMNSKAVQTSDNLLATVVN 261 >gi|114799934|ref|YP_758986.1| flagellar basal body rod protein FlgF [Hyphomonas neptunium ATCC 15444] gi|114740108|gb|ABI78233.1| flagellar basal-body rod protein FlgF [Hyphomonas neptunium ATCC 15444] Length = 238 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + LA Q L Q + VA+N++N+ T G+++ + F+E + + + DQ +S Sbjct: 1 MSSPIYTTLARQQGLMQEMQVVANNLANSSTTGYKSDRAIFTEFLVSTGDSPDQSLSMGG 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G E G TG D A++G+ +F +E+P+G LTR G F+++ G LV G Sbjct: 61 LGGHAFQLEQGGLNFTGGRFDLAIQGEGFFMVETPQGERLTRAGHFQLSGAGQLVDMQGN 120 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVL PI IP + GE G IS G++I +G+ D R N+ + Sbjct: 121 -PVLSAGGNPITIPDDATDVSFGEDGTISGNGQIIDQVGIMLADG--QLTRDSNTYFAAE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P +D + +G LE SN + + E+ +MI + + + + L+++ ++ + + I Sbjct: 178 GGVAPTQD---AKLVQGALEQSNVSPVLEVSRMIEVQRAYEAGQALLEKEDQRISQLITA 234 Query: 241 I 241 + Sbjct: 235 V 235 >gi|157363239|ref|YP_001470006.1| flagellar basal-body rod protein FlgG [Thermotoga lettingae TMO] gi|157313843|gb|ABV32942.1| flagellar basal-body rod protein FlgG [Thermotoga lettingae TMO] Length = 261 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 111/266 (41%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S A + +L T+++N++N DT G++ ++ +F ++V + + + Sbjct: 1 MMVSLYSAATGMWAQQYKLDTISNNLANVDTTGYKKVRAEFQDLVYQYYKNAGTPTAVNS 60 Query: 61 S-------------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G+ TG LD A+ GD +F ++ G TRDG F Sbjct: 61 TIPTGIYFGHGTRLSATTKIFSLGNMEYTGNALDVAITGDGFFQVQLQDGRTAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKG--KVIATMGLY 161 KV +G +V+++G + I +P N+ G S Q G + + T+ L Sbjct: 121 KVDSEGRVVTSNGLALI-----PNIVVPADAVAINISPDGIFSAEMQDGTVQNLGTITLV 175 Query: 162 SVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + E + I TP +D G +++G+LE +N + + EM MI Sbjct: 176 RFVNPSGLKAVGDNLYLETTASGEPIEGTPNQDGFGA-LQQGYLEKANVDVVKEMVDMIT 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + +ML+ + + Sbjct: 235 AQRAYELNARAIQTAD-NMLQTVSTL 259 >gi|298529927|ref|ZP_07017329.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509301|gb|EFI33205.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] Length = 261 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 115/264 (43%), Gaps = 26/264 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 MQ ++ E +++T+ +N++N +T G++ K+ F +V +D Sbjct: 1 MQDEMYSAFFGAMSQEAKMNTITNNLANVNTTGYKRDKIAFEDVFTRYASDYGDPNMTLE 60 Query: 56 ----------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDG 104 S +L + G TG LD A+ G+ +F + +P G TR+G Sbjct: 61 DRLPWPESKLRSQTRPSPVHLDLQDGDMRKTGNPLDLAISGEGFFEVTTPEGETAYTRNG 120 Query: 105 RFKVTDD-GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 F + G LV+ G+ L PI+IP+ +GE GE+ G ++ + L + Sbjct: 121 SFLRNPETGHLVT--GQNFELQGEGGPIEIPEDASNIAIGENGEVLADGDLLDVINLTTF 178 Query: 164 DMSQGFVRRENSGI----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 ++ + + P P ED +++G+LE+SN + +YEM MI + Sbjct: 179 TDLNALEKKGRQLVQVKDGADSAPIPAED---ARIEQGYLENSNVDPVYEMVNMISTMRN 235 Query: 220 FNSITTLIDENEKSMLEAIRNIAS 243 F ++ ++ + + + I+ + + Sbjct: 236 FEALQKMMTSSHEKDQQLIQQVGT 259 >gi|240139802|ref|YP_002964279.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] gi|240009776|gb|ACS41002.1| flagellar basal-body rod protein flgF [Methylobacterium extorquens AM1] Length = 246 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + +G++AQ AL + L +A+NM+N T GF+ +F E + + + D++ Sbjct: 1 MQNALFVGVSAQTALARELDVIANNMANVSTTGFKARSSRFQEYLMPVASADSFQRSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G + AL GDA+ A+++P+G+ TR+G F++ G+LV Sbjct: 61 LSYVIDQGTPLDLTQGPVEPDSNPMHVALRGDAFLAVQTPQGLRYTRNGAFELDATGNLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G + V PI I Q++ + G IS + + L + +Q + Sbjct: 121 TSDG-HAVQGDGG-PITIGQQETGLAIAPDGTISTNLGIRGRLRLVTFANAQALKSEGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S P P G ++ G LE SN + EM +++ + + ++ ++++I + Sbjct: 179 LFSSEAPGRPA--GPGAHLEPGALERSNVKPVVEMTRLMDVNRTYSMVSSVISRLDDLRG 236 Query: 236 EAIRNIA 242 AIR +A Sbjct: 237 TAIRRLA 243 >gi|126730135|ref|ZP_01745947.1| flagellar basal body rod protein [Sagittula stellata E-37] gi|126709515|gb|EBA08569.1| flagellar basal body rod protein [Sagittula stellata E-37] Length = 237 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 6/239 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+T+ I L+ Q +L + + +A+N++N +T GFR + FSE + + D +S A Sbjct: 1 METAGYIALSRQSSLLREMQVIANNIANANTTGFRQEGMIFSEYLS--EGDRLDSVSMAA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S G TG+ D A+EG+ +F + +P G LTR G F + +G LV+ G Sbjct: 59 GRIHKTSFAQGELEPTGSAYDLAIEGEGFFLVGTPNGERLTRAGAFSPSAEGLLVTPDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVLD PI +P + + G +S G+ I +G+ VR + Sbjct: 119 -PVLDGGGAPIFVPPDATDLAIAQDGTLSTGGRPIGQIGVVRPVDELAMVREGSQLFDAT 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P+++ V +GF E SN +++ ++ +M+ + + + + + ++ + +AI+ Sbjct: 178 AGFEPVDNP---RVMQGFTEASNVDTVLQLARMVEVQRAYELGQSFSEREDERIRDAIK 233 >gi|313672412|ref|YP_004050523.1| flagellar basal-body rod protein flgg [Calditerrivibrio nitroreducens DSM 19672] gi|312939168|gb|ADR18360.1| flagellar basal-body rod protein FlgG [Calditerrivibrio nitroreducens DSM 19672] Length = 262 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 111/267 (41%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + + A + + +A+N++N + +GF+ ++ F +++ + Sbjct: 1 MFRAMWTAASGMTAQQMNIDNIANNLANVNNIGFKKSRIHFEDLLYQEMRPAGGPTAAGI 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + G + ++ E G+F TG +LD A+EGD +F + P G I TR+G F Sbjct: 61 NHPTGIQIGLGTKVVATEKIFGQGNFQQTGNQLDIAIEGDGFFQVTMPDGTIGYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ +G++V+A G I +P+ +G+ G +S + + L Sbjct: 121 KLDSNGNIVTAEGYLL-----EPAIAVPENATSIIIGQDGTVSVTIPGDTNPTELGAIEL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + P + P D G TV +G LE SN N EM MI Sbjct: 176 ARFINPSGLKNIGRNLYQPTAASGEPVTGAPGTDAFG-TVAQGILEMSNVNVAEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ ML+ + N+ Sbjct: 235 TGQRAYELNSKAIQTSDE-MLQVVNNL 260 >gi|256111963|ref|ZP_05452914.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3 str. Ether] gi|265993412|ref|ZP_06105969.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3 str. Ether] gi|262764282|gb|EEZ10314.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 3 str. Ether] Length = 243 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 5/244 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DLSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G VS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDPVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ PI + + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIPADADLAYAGTSGVIP 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 177 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIK 236 Query: 240 NIAS 243 + S Sbjct: 237 TLGS 240 >gi|115523168|ref|YP_780079.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisA53] gi|115517115|gb|ABJ05099.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisA53] Length = 243 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+AQ++LE+RL T+A+NM+N T FR VKF A+ N + ++F Sbjct: 1 MQSALYVSLSAQVSLEKRLETIANNMANMKTAAFRADAVKFET---AMSNAASKPVAFST 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G ++S++ GS TG LD A+ G+AW P G + TRDGR ++ +G L + +G Sbjct: 58 PGDNFISRKAGSVTQTGNNLDVAVVGNAWIGFTGPNGAVYTRDGRMQINANGELQTVTG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD PI + + G ISQ + +GL+ + R NSG+ P+ Sbjct: 117 YPVLDAGGTPILVDPDAGPLIIARNGIISQGTNQVGVLGLFDIPADAKLERFGNSGVVPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 T + D G ++GF+E SN + + E+ QM+ + F +++LI+ +E +M AIR Sbjct: 177 RAATAVVDFVGAGFQQGFVEGSNVDPLLELTQMMTAQRAFQGVSSLIEGSEGTMQNAIRT 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|114320059|ref|YP_741742.1| flagellar basal-body rod protein FlgG [Alkalilimnicola ehrlichii MLHE-1] gi|114226453|gb|ABI56252.1| flagellar basal-body rod protein FlgG [Alkalilimnicola ehrlichii MLHE-1] Length = 261 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 108/266 (40%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + + A + R+ V++N++N +T GF+ + F +++ + + Sbjct: 1 MNPALWVAKTGLDAQQTRMQVVSNNLANVNTTGFKKDRANFEDLIYQTVRQAGGQSTQDT 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G S E G+ T LD A+EGD +F + P G I +RDG F Sbjct: 61 LLPTGLNLGTGVRVTSTEKIHMQGNIQQTENSLDIAIEGDGFFQILMPDGEIAYSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 V D G +V++SG PI IP +G G +S + + + L Sbjct: 121 NVDDQGQMVTSSGY-----QLQPPINIPDDAVSVTIGRDGTVSARLPGQADPQQLGNIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + RE + P P D G T+ +G LE SN N E+ MI Sbjct: 176 ADFINPAGLDAMGGNLFRETAASGPPQISDPGLDGVG-TLLQGALESSNVNIAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + F + T I ++ ML+ I N Sbjct: 235 ETQRAFETNTKAISSTDQ-MLQFINN 259 >gi|120613061|ref|YP_972739.1| flagellar basal-body rod protein FlgG [Acidovorax citrulli AAC00-1] gi|326319099|ref|YP_004236771.1| flagellar basal-body rod protein FlgG [Acidovorax avenae subsp. avenae ATCC 19860] gi|120591525|gb|ABM34965.1| flagellar basal-body rod protein FlgG [Acidovorax citrulli AAC00-1] gi|323375935|gb|ADX48204.1| flagellar basal-body rod protein FlgG [Acidovorax avenae subsp. avenae ATCC 19860] Length = 260 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N T G++ F +++ + + + Sbjct: 1 MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGYKRNNAVFEDLIYQNLRQVGAQTTEQN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + + GS + LD A+ G+ +F + P G TRDG F Sbjct: 61 QLPTGLHLGLGVRTVATSRNFTQGSLAQSNNNLDVAINGNGFFQVTMPDGTTGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ G LV++SG PV + I +P ++ G +S + I T+G+ Sbjct: 121 QLDSQGRLVTSSG-LPVANG----ITVPANATGISISTDGIVSATVPGTTAPQQIGTLGM 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S S G + +E++ TP + G+ +++GFLE SN N + E+ MI Sbjct: 176 ASFINSAGLEPIGQNLFKESAASGQPQQGTPGTNGLGI-IRQGFLETSNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEMNSKAIQTSDQMLAKLAQ 259 >gi|110677662|ref|YP_680669.1| flagellar basal body rod protein FlgF [Roseobacter denitrificans OCh 114] gi|109453778|gb|ABG29983.1| flagellar basal-body rod protein FlgF, putative [Roseobacter denitrificans OCh 114] Length = 237 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + Q L + + VA+N++N T GFR V FSE V ++ D +S Sbjct: 1 MENSGYTTITRQSGLMKEMRVVANNIANAATSGFRQEGVIFSEYVKSV--DGASSLSMGQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G+ TG + DFA+EGD +F +E+P G LTR G F DG LV+ G Sbjct: 59 ADARQTSFAQGALTQTGGQFDFAIEGDGFFLVETPLGERLTRAGAFSPNADGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ IP V G IS G + +GL QG VR + + Sbjct: 118 YRVLDAGGAPVFIPPGAADIAVSADGTISTNGDPVGQLGLVQPRNPQGLVREDGVMFRAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 E + + F+E+SN N + ++ +MI + + + + ++ ++ + +A+R Sbjct: 178 EGYEAAEQG---RILQSFVENSNVNPILQLTRMIEVQRAYELGASFVEAEDERVRQAMRT 234 Query: 241 I 241 + Sbjct: 235 M 235 >gi|118581848|ref|YP_903098.1| flagellar basal body rod protein [Pelobacter propionicus DSM 2379] gi|118504558|gb|ABL01041.1| flagellar basal body rod protein [Pelobacter propionicus DSM 2379] Length = 245 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 126/248 (50%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ +A +R+ T+++N++N +T GF+ K+ F ++ N S A Sbjct: 1 MNSGMYAALSGSIAAMKRMDTISNNLANVNTPGFKKDKMLFESMLAGTSNPPAVPQSSTA 60 Query: 61 S-----GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 Y+ VGS TG LDFA++GD +F +++P+G TR G F+++ DG+LV Sbjct: 61 DPIMQKESVYIDYGVGSASQTGNPLDFAIDGDGFFVIQTPQGRAYTRQGNFRLSVDGTLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT-MGLYSVDMSQGFVRREN 174 +A G +PVL V I+I + +V +GE++ G T + + + + Sbjct: 121 TADG-FPVLGQDDV-IRI--QGGQVDVNSRGEVTVDGTPTGTMISIVDFPKPYNLTKVSS 176 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + P P + +G ++++G LE SN +++ EM QMI T+ F++ +I + + Sbjct: 177 AQFVPANPQATPQAATG-SIRQGQLEGSNVDTITEMVQMIETTRYFDACQRVIKGFDDMV 235 Query: 235 LEAIRNIA 242 +A ++ Sbjct: 236 GKAANDLG 243 >gi|254458078|ref|ZP_05071505.1| flagellar basal-body rod protein FlgG [Campylobacterales bacterium GD 1] gi|207085471|gb|EDZ62756.1| flagellar basal-body rod protein FlgG [Campylobacterales bacterium GD 1] Length = 262 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L ++ ++ T A+N++N +T+GF+ + +FS+++ + + S V Sbjct: 1 MMQSLYTASTGMLGMQTQIDTTANNIANVNTIGFKKSRAEFSDLMYKVMSYAGTATSDVT 60 Query: 61 SGKEYL-------------SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + GS T +LD A+ G +F LE P G + +R+G F Sbjct: 61 KSPTGIEVGLGVRPTAINKIFSEGSLKQTDNQLDVAITGRGFFKLELPDGTEVYSRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 KV D+GS+V++ G V I IP ++G G ++ + I + L Sbjct: 121 KVDDNGSMVNSDGYKLV-----PEIVIPPDATDISIGTDGTVTVVQPGQTQATQIGQITL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G R ++ + + P+E GV +++GF+E SN + E+ +I Sbjct: 176 TNFINPAGLHSRGDNLYLETDSSGQPVEGTPGVDGLGVLRQGFVELSNVELVVELTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + ++S + +I +++ ML+ N+ Sbjct: 236 GQRAYDSNSKVITTSDE-MLQTTNNL 260 >gi|319764541|ref|YP_004128478.1| flagellar basal-body rod protein flgg [Alicycliphilus denitrificans BC] gi|317119102|gb|ADV01591.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans BC] Length = 260 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 110/263 (41%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N T GF+ F +++ + + + Sbjct: 1 MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGFKRNSAVFEDLIYQNLRQVGAQTTEEN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + GS + LD A+ G+ +F ++ P G I TRDG F Sbjct: 61 QLPTGLHLGLGVRTVATSRHFTQGSLQQSSNSLDVAINGNGFFEVQLPDGTIGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ G +V++ G PV + I +PQ ++ E G +S + + + + + Sbjct: 121 QLDAQGRMVTS-GGLPVANG----ITVPQGATSISISETGVVSATIAGNAQPQQLGQLAM 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S + G + +E++ P P + GV +K+GFLE SN N + E+ MI Sbjct: 176 SSFINAAGLQPVGQNMYKESAASGPPQQGQPGTNGLGV-IKQGFLETSNVNVVEELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 QTQRAYEMNSKAIQTSDQMLAKL 257 >gi|254470342|ref|ZP_05083746.1| flagellar basal-body rod protein [Pseudovibrio sp. JE062] gi|211960653|gb|EEA95849.1| flagellar basal-body rod protein [Pseudovibrio sp. JE062] Length = 246 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 12/249 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQK 55 M+ + IGL+ Q AL + L VA+N++N +T G++ ++ F E + D+ Sbjct: 1 MENAQLIGLSRQSALRRNLDVVANNLANINTTGYKAQRLIFEEYLMPTAQATEFQRPDRP 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 +SF GS TG LD A+EGD + A+ G TR G + +G+L Sbjct: 61 LSFTQDVGTATVLTQGSIQLTGNPLDVAIEGDGYLAVTGAEGEQFYTRAGSLAIDPEGTL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V+ G PVL PIQI +D + ++G IS I + +Y+ D Q + Sbjct: 121 VT-DGGLPVL-ADGAPIQINPEDGEITITKEGVISTGQGEIGRLDVYTFDNRQEL-KHVG 177 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + + P P + TV +G LE SN + E+ +MI +T+++ S++ ++ + + Sbjct: 178 VNLFSGLNPIPA---NNPTVIQGALEGSNVEGVREISRMIEITRQYQSVSKMMSQRNELR 234 Query: 235 LEAIRNIAS 243 +IR + S Sbjct: 235 QRSIRELGS 243 >gi|292492365|ref|YP_003527804.1| flagellar basal-body rod protein FlgG [Nitrosococcus halophilus Nc4] gi|291580960|gb|ADE15417.1| flagellar basal-body rod protein FlgG [Nitrosococcus halophilus Nc4] Length = 261 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 109/266 (40%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + I A + R++ +++N++N +T GF+ + F +++ GA + Sbjct: 1 MNQALWIAKTGLDAQQTRMAVISNNLANVNTTGFKRGRAVFEDLLYQTVRQPGAQSSQNT 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q S + G + G T LD A++G +F + P G TRDG F Sbjct: 61 QLPSGLMLGTGVRTVATEKLFSQGGIAQTENPLDLAIQGRGFFQILMPDGSLAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG LV++SG YPV I IP+ VG G +S + + L Sbjct: 121 QVDADGQLVTSSG-YPV----EPRITIPEGALSVTVGSDGIVSVLVAGDTAPTQLGNVQL 175 Query: 161 YSVDMSQGFVRRENSGISPN----IPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 G N+ + T + L+G T+ +G LE +N N + E+ MI Sbjct: 176 ADFINPAGLQPIGNNLFKETASSGVAQTGIPGLTGFGTLVQGALEGANVNVVEELVNMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ + A + + Sbjct: 236 TQRAYEMNSKAIAGTDEMLQFATQTL 261 >gi|91204384|emb|CAJ70884.1| strongly similar to flagellar hook protein [Candidatus Kuenenia stuttgartiensis] Length = 250 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 4/240 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G + + + +A N++N +TVG++ F V KN + Sbjct: 9 MISGLYTGATNMMGQGEYQAVIARNLANVNTVGYKKNIAVFESFVAGAKNQAKEASEGTG 68 Query: 61 S--GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S GK G TG ELD A++GD +F +++ GI TR G+F ++ D ++V+ Sbjct: 69 SSLGKVATDFSPGVMQFTGNELDLAIKGDGFFEVQTKAGIAYTRSGQFMLSRDRTVVTPE 128 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G +P++ PIQIP K + F G +S GK I+ + + + G S Sbjct: 129 G-WPLMSSGG-PIQIPAKAQSFTFKTDGSVSVDGKTISKLNIVNFLNPDGLTSIGGSAYV 186 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + P V + +G+LE SN N + EM MI + F S D S+ + I Sbjct: 187 ASDKANPTTADGTVEIAQGYLEKSNVNVIDEMVNMIANMRSFQSGNKSTDSINDSLKKLI 246 >gi|325982369|ref|YP_004294771.1| flagellar basal-body rod protein FlgG [Nitrosomonas sp. AL212] gi|325531888|gb|ADZ26609.1| flagellar basal-body rod protein FlgG [Nitrosomonas sp. AL212] Length = 260 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 103/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + +L +A+N++N +T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLEAQQTKLDVIANNLANVNTNGFKRSRAVFEDLMYQTLRQPGAQSSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G T D A+ G +F + P G TRDG F Sbjct: 61 QLPSGLQLGTGVKPVATESIFTQGIIQPTDNPRDVAIRGLGFFQVLMPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ +G LV++SG I +P + VG G +S + + L Sbjct: 121 QLDLNGQLVTSSGYMV-----QPAIVVPPNTQTVTVGRDGTVSATVPGSNVPIQLGNIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 S G + + TP ++ G + +GF+E SN + + E+ MI Sbjct: 176 ASFINPSGLQKMGENLYMETASSGTPNQNAPGTNGLGILDQGFVETSNVSVVEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I+ +++ + + + Sbjct: 236 TQRAYEMNSKSIETSDQMLQKLAQ 259 >gi|92116937|ref|YP_576666.1| flagellar basal body rod protein FlgF [Nitrobacter hamburgensis X14] gi|91799831|gb|ABE62206.1| flagellar basal body rod protein [Nitrobacter hamburgensis X14] Length = 255 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 15/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + IGL+ Q+ LE+++ VA+N++N T G++ + F E + + D++ Sbjct: 1 MENTLLIGLSRQMMLERQMDVVANNVANVTTNGYKADRSLFEEYLMPGAHEDNFVGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV + G T LD A++G A+ +++P G TRDG ++ G LV Sbjct: 61 LSFVQDRATFHDFAGGPTEQTKNPLDVAIDGKAFLVVQTPAGERYTRDGGLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDMSQG 168 +ASG PVL PI Q D + G ++ + + L S +Q Sbjct: 121 TASGN-PVLGSNG-PITFQQTDHDITISNDGTVTVLEGVNNAADSIRGKLRLVSFAQAQK 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 ++ E S + + V +GF+E SN N++ EM +M+ +++ + + TL+ Sbjct: 179 LLK-EGSNLYSAGAGNSARPDTSARVHQGFIEKSNVNAVTEMSRMVEVSRAYTQMATLLQ 237 Query: 229 ENEKSMLEAIRNIA 242 + AI +A Sbjct: 238 QQSDLQRSAIEKLA 251 >gi|217076897|ref|YP_002334613.1| flagellar basal-body rod protein FlgG [Thermosipho africanus TCF52B] gi|217036750|gb|ACJ75272.1| flagellar basal-body rod protein FlgG [Thermosipho africanus TCF52B] Length = 261 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 29/261 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 M A + +L T+++N++N DT G++ +K +F +++ +N Sbjct: 1 MINGLYTAATGMWAQQFKLDTLSNNIANVDTAGYKKVKSEFQDLLYDYSKNAGAATAQNS 60 Query: 52 IDQKISFVASGK----EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +V G G+ TG LD A+ GD +F ++ G I TRDG+F Sbjct: 61 LHPTGLYVGHGTKLSATTRIFTQGNLERTGNSLDLAISGDGFFQIQLQDGRIAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKG--KVIATMGLY 161 K+ +G +++++G S I +PQ ++ G ++ Q G + + T+ L Sbjct: 121 KIDGNGRIITSNGNLL-----SPNIVVPQNAVSLSISPDGIVTAELQDGTLQNLGTITLV 175 Query: 162 SVDMSQGFVRRENSG-ISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHL 216 G ++ + TP+E +G ++ +G++E SN + + EM MI Sbjct: 176 RFINPSGLKAIGDNLFLETPASGTPVEGTAGQDGFGSILQGYVEKSNVDIVKEMVDMISA 235 Query: 217 TQKFNSITTLIDENEKSMLEA 237 + + + I ++ + A Sbjct: 236 MRAYELNSRTIQTADEMLRTA 256 >gi|206890777|ref|YP_002249848.1| flagellar basal-body rod protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742715|gb|ACI21772.1| flagellar basal-body rod protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] Length = 262 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 30/260 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S A + L ++ N++N +T GF+ + +F +++ GA +D Sbjct: 1 MLRSLFTASTGMYAQQLNLDVISHNLANVNTTGFKKGRAEFQDLLYQNVINPGAPSDDGT 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q S + G G I+TG +LD A++GD +F + P G TR G F Sbjct: 61 QYPSGIQVGLGVRPVAVAKFFTPGDLINTGNDLDLAIDGDGFFQVTLPDGTIAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGL 160 ++ DG +V+ G YP+ I +P G G ++ Q G V I T+ L Sbjct: 121 RIDKDGRIVTNDG-YPIEPG----ITVPADATKITFGADGTVTVLQPGTVAPVQIGTVEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPP-----TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + + +GFLE SN N + E+ MI Sbjct: 176 ARFINPGGLQAIGRNLFLETDASGTPTTGTPGTEGRGKIVQGFLEMSNVNIVEELANMII 235 Query: 216 LTQKFNSITTLIDENEKSML 235 + F+ + + +++ + Sbjct: 236 AQRAFDINSKAVQTSDEMLQ 255 >gi|138894748|ref|YP_001125201.1| flagellar basal body rod protein FlgG [Geobacillus thermodenitrificans NG80-2] gi|134266261|gb|ABO66456.1| Flagellar hook protein [Geobacillus thermodenitrificans NG80-2] Length = 264 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 28/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G+ A + +L + +N++N +T GF+ + F +++ G Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFQDLMSQTISGASGPSAASG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 V G + GS +TG LD A+ GD +F + G + TR G F Sbjct: 61 GTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDANGNNQMYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLY 161 + +G +V+A+G Y + D P+QI + ++G G + + +++ T+ L Sbjct: 121 YLDSEGYIVNANGLYLLGD--GGPLQIDPNAKSLSIGADGNVTIVDDTGNLQLVGTIQLA 178 Query: 162 SVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + N+ + P + +G + G LE SN + E +MI Sbjct: 179 KFANPDGLEKEGNNLFRETVNSGDPQIGVPGANGTG-KLVSGALEMSNVDLAEEFTEMIV 237 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + F + T +I +++ + E + Sbjct: 238 AQRGFQANTRIITTSDEILQELVN 261 >gi|308185371|ref|YP_003929504.1| flagellar basal body rod protein FlgG [Helicobacter pylori SJM180] gi|308061291|gb|ADO03187.1| flagellar basal body rod protein FlgG [Helicobacter pylori SJM180] Length = 262 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + LA + + T ++N++N +T GF+ + F+++ S Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQLPDGTTAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ + G+LV++ G + I +P+ N+G G +S VI + L Sbjct: 121 KLDEQGNLVTSEGYLLI-----PQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ I P G +++GFLE SN + EM +I Sbjct: 176 ANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQGLG-KLRQGFLELSNVKLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 235 TAQRAYEANSKSIQTAD-AMLQTVNSL 260 >gi|189426331|ref|YP_001953508.1| flagellar basal body rod protein [Geobacter lovleyi SZ] gi|189422590|gb|ACD96988.1| flagellar basal body rod protein [Geobacter lovleyi SZ] Length = 258 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 16/257 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ LA +RL ++ N++N T GF+ ++ F V+ +N S A Sbjct: 1 MNSGMYSALSGNLAAMKRLDVISSNLANASTNGFKQDRLAFESVLAGNRNPPAVPPSQTA 60 Query: 61 S-----GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + G+ + TG LD AL+GD +F + +P G+ TR G F++ DG+L+ Sbjct: 61 DPVLLQERMLTDYSAGTLVQTGNTLDVALQGDGFFVVRTPEGVAYTRQGNFRLASDGTLI 120 Query: 116 SASGKYPVL------DMASVPIQIP----QKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 +A G Y VL PI+I V +G I+ G+ +A + L+ Sbjct: 121 TADG-YQVLSKAGERPEDGQPIRIDVAGQDGGGRPVVDSQGGITINGEPVANLALFDFPK 179 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + ++ P TV +G LE SN N++ EM QM+ ++ F + Sbjct: 180 PYQLTKTASTLFVPAAGTAVQAAGPLTTVAQGALEQSNVNTIAEMVQMVDASRYFETCQR 239 Query: 226 LIDENEKSMLEAIRNIA 242 ++ + +A+ ++A Sbjct: 240 VVRSFDDMAAKAVNDLA 256 >gi|74317650|ref|YP_315390.1| flagellar basal body rod protein FlgG [Thiobacillus denitrificans ATCC 25259] gi|74057145|gb|AAZ97585.1| flagellar basal body rod protein FlgG [Thiobacillus denitrificans ATCC 25259] Length = 260 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA ++ Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTSGFKRARAVFEDLLYQTIRQPGAQSSEQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q S + G G+ TG D A++G+ +F + P G TRDG F Sbjct: 61 QLPSGLQIGTGVKPVATERIFTQGNLQQTGNAKDVAIQGNGFFQVLMPDGTTSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +G LV+ASG Y V I IP + +G G +S I T+ L Sbjct: 121 MADANGQLVTASG-YAVQPA----ITIPADTQTLTIGRDGTVSVTQPGSATPVTIGTLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + P + +G+ + +G++E SN N + E+ MI Sbjct: 176 AMFVNPAGLQSLGENLYAETAASGTPSSSAPGSNGAGL-LNQGYVETSNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 235 QTQRAYEINSKAIQTSDQMLQRLTQ 259 >gi|15646192|ref|NP_208376.1| flagellar basal body rod protein FlgG [Helicobacter pylori 26695] gi|188528376|ref|YP_001911063.1| flagellar basal body rod protein FlgG [Helicobacter pylori Shi470] gi|217033804|ref|ZP_03439229.1| hypothetical protein HP9810_877g8 [Helicobacter pylori 98-10] gi|308183740|ref|YP_003927867.1| flagellar basal body rod protein FlgG [Helicobacter pylori PeCan4] gi|2314768|gb|AAD08623.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori 26695] gi|188144616|gb|ACD49033.1| flagellar basal body rod protein FlgG [Helicobacter pylori Shi470] gi|216943702|gb|EEC23145.1| hypothetical protein HP9810_877g8 [Helicobacter pylori 98-10] gi|261838871|gb|ACX98637.1| flagellar basal-body rod protein [Helicobacter pylori 51] gi|297380761|gb|ADI35648.1| flagellar basal-body rod protein FlgG [Helicobacter pylori v225d] gi|308062867|gb|ADO04755.1| flagellar basal body rod protein FlgG [Helicobacter pylori Cuz20] gi|308064367|gb|ADO06254.1| flagellar basal body rod protein FlgG [Helicobacter pylori Sat464] gi|308065925|gb|ADO07817.1| flagellar basal body rod protein FlgG [Helicobacter pylori PeCan4] gi|315585990|gb|ADU40371.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 35A] gi|317178306|dbj|BAJ56095.1| flagellar basal body rod protein FlgG [Helicobacter pylori F16] gi|317179787|dbj|BAJ57575.1| flagellar basal body rod protein FlgG [Helicobacter pylori F30] gi|317181286|dbj|BAJ59072.1| flagellar basal body rod protein FlgG [Helicobacter pylori F32] gi|317182809|dbj|BAJ60593.1| flagellar basal body rod protein FlgG [Helicobacter pylori F57] gi|332674396|gb|AEE71213.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 83] Length = 262 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + LA + + T ++N++N +T GF+ + F+++ S Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ + G+LV++ G + I +P+ N+G G +S VI + L Sbjct: 121 KLDEQGNLVTSEGYLLI-----PQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ I P G +++GFLE SN + EM +I Sbjct: 176 ANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQGLG-KLRQGFLELSNVRLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 235 TAQRAYEANSKSIQTAD-AMLQTVNSL 260 >gi|304317904|ref|YP_003853049.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779406|gb|ADL69965.1| flagellar basal-body rod protein FlgF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 108/253 (42%), Gaps = 18/253 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M + +A ++ + +++N++N +T G++ V F + + + + Sbjct: 1 MLRGLYTASSGMIAQQKIVDVLSNNIANVNTSGYKKDTVTTMAFPDFMVTRSGGDNVPYN 60 Query: 58 FVASGKEY--------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 +Y + G+ T +LDFA++G +F + +P GI TRDG F + Sbjct: 61 GYIGNMDYGVLVETFNTNFSEGNIEKTDGKLDFAIDGSGFFTVSTPNGIRYTRDGSFTLN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 +G LV+ G Y V+ PIQ+ D +V + G IS G+ + + + Sbjct: 121 SNGYLVTKDGYY-VMGQNG-PIQLNNGD--ISVDDFGNISLNGQTVNKLNIVDFSNYSTL 176 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N+ + VK+G+LE SN N + EM MI + + + + Sbjct: 177 RKEGNNLFFTTGGQAIPASGA---VKQGYLEGSNVNPVDEMVTMISAMRTYEANQKTVSA 233 Query: 230 NEKSMLEAIRNIA 242 ++++ +A+ + Sbjct: 234 FDETLDKAVNEVG 246 >gi|326792666|ref|YP_004310487.1| flagellar basal-body rod protein FlgF [Clostridium lentocellum DSM 5427] gi|326543430|gb|ADZ85289.1| flagellar basal-body rod protein FlgF [Clostridium lentocellum DSM 5427] Length = 255 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 115/259 (44%), Gaps = 23/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 M +RL ++++++NT T G++ F EV+ ND ++ Sbjct: 1 MVRGLYTAATGMNVQAKRLEIISNDLANTTTTGYKKDVAVVSSFQEVLMTRLNDTQNQVP 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + Y GS ISTG +D A++GD +F +++P G TRDG F Sbjct: 61 NNGPIGNITYGAKIDEVYTDFTQGSVISTGEMVDVAIQGDGFFVVQTPNGEAYTRDGNFS 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQK----DEIFNVGEKGEISQKGKVIATMGLYSV 163 + G LV+ G YPV+ + PI + ++ + +GE++ G+ I T+ L Sbjct: 121 INQYGDLVTKEG-YPVMGLDG-PITLGEEFLTTGGDVVISSQGEVTLDGQYIDTLELARF 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + S+ + +N+ S P E + +G+LE +N N + M MI +++ + + Sbjct: 179 EDSRALTKMDNNLYSSTAARLPFEG----KLIQGYLESANVNPVTAMVDMITVSRAYETN 234 Query: 224 TTLIDENEKSMLEAIRNIA 242 +I + + +A+ + Sbjct: 235 QKMIQVQDSLLGKAVNELG 253 >gi|197285508|ref|YP_002151380.1| flagellar basal-body rod protein [Proteus mirabilis HI4320] gi|227355999|ref|ZP_03840391.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis ATCC 29906] gi|194682995|emb|CAR43442.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis HI4320] gi|227163987|gb|EEI48889.1| flagellar basal-body rod protein (distal rod protein) [Proteus mirabilis ATCC 29906] Length = 260 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 108/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + + +++N++N T GF+ + F +++ GA+ ++ Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMTSEQT 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S + G G+ T D A++G +F ++ P G TRDG F Sbjct: 61 NAPSGLQIGTGVRPVATERLHSQGNLAQTNGTRDVAIKGQGFFHVQLPDGTDAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ +G LV++SG V I +P+ + VG G +S + + + + L Sbjct: 121 QMDQNGQLVTSSGFQIV-----PAIILPETAKKVMVGRDGIVSVEIEGSPAPQQVGQLTL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + P E+ G+ + +G++E SN N E+ MI Sbjct: 176 TTFINDSGLESVGENLYLETASSGAPTENAPGINGAGLLYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEINSKAISTSDQMLQKLTQ 259 >gi|85706168|ref|ZP_01037263.1| flagellar basal-body rod protein FlgF [Roseovarius sp. 217] gi|85669332|gb|EAQ24198.1| flagellar basal-body rod protein FlgF [Roseovarius sp. 217] Length = 237 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+T+ L Q L + L VA+N++N T G+R + FSE V +++ +S Sbjct: 1 METAGYTTLTRQSGLLRELQVVANNIANAATTGYRQEGLIFSEFV--KRSEGGPSLSMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S G TG LD A+EG+ +F +E+P G LTR G F ++ G LV+ G Sbjct: 59 GNVRMTSTVQGPLRPTGGTLDLAIEGEGFFLIETPSGERLTRAGAFTLSAQGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD P+ +P + + G +S G+ +A +GL S +R + N Sbjct: 118 FRVLDAGGAPVFVPPDAKSIGLSPDGTLSDNGRPLAQIGLVRPIDSLDVIREDGVLFRTN 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+ED V +GFLE +N + + ++ +MI + + + + +D + ++ A+ + Sbjct: 178 GGFEPVEDG---RVLQGFLEGANVDPIGQIARMIEVQRAYEMGQSFLDSENERVMTALDS 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|253998486|ref|YP_003050549.1| flagellar basal-body rod protein FlgG [Methylovorus sp. SIP3-4] gi|313200561|ref|YP_004039219.1| flagellar basal-body rod protein flgg [Methylovorus sp. MP688] gi|253985165|gb|ACT50022.1| flagellar basal-body rod protein FlgG [Methylovorus sp. SIP3-4] gi|312439877|gb|ADQ83983.1| flagellar basal-body rod protein FlgG [Methylovorus sp. MP688] Length = 260 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +A+N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQNIRQPGAQSSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ T D A+ G+ +F + P G TRDG F Sbjct: 61 QLPSGMQLGTGVKPVATERIFSQGNLQQTENAKDLAINGEGFFQVLLPDGSTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V + G +V+ASG I IP + VG G +S I T+ L Sbjct: 121 QVDNQGQMVTASGY-----TIQPAITIPANAQSITVGRDGTVSVTLPNSVATTQIGTIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E S TP + +GV + +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLQSKGENLYVETSASGTASTNTPGANGAGV-LNQGYVETSNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ ML+ + + Sbjct: 235 QTQRAYEINSKAITTSDQ-MLQRLSQL 260 >gi|330826757|ref|YP_004390060.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans K601] gi|329312129|gb|AEB86544.1| flagellar basal-body rod protein FlgG [Alicycliphilus denitrificans K601] Length = 260 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 111/263 (42%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N T GF+ F +++ + + + Sbjct: 1 MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGFKRNSAVFEDLIYQNLRQVGAQTTEEN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + + GS + LD A+ G+ +F ++ P G I TRDG F Sbjct: 61 QLPTGLHLGLGVRTVATSRNFTQGSLQQSSNSLDVAINGNGFFEVQLPDGTIGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ G +V++ G PV + I +PQ ++ E G +S + + + + + Sbjct: 121 QLDAQGRMVTS-GGLPVANG----ITVPQGATSISISETGVVSATIAGNAQPQQLGQLAM 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S + G + +E++ P P + GV +K+GFLE SN N + E+ MI Sbjct: 176 SSFINAAGLQPVGQNMYKESAASGPPQQGQPGTNGLGV-IKQGFLETSNVNVVEELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 QTQRAYEMNSKAIQTSDQMLAKL 257 >gi|294679032|ref|YP_003579647.1| flagellar basal-body rod protein FlgF [Rhodobacter capsulatus SB 1003] gi|294477852|gb|ADE87240.1| flagellar basal-body rod protein FlgF [Rhodobacter capsulatus SB 1003] Length = 237 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 5/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + LA Q L Q + VA+NM+N +T GFR V FSE V ++ D + +S Sbjct: 1 MDNTIYAALARQSGLMQEMQVVANNMANVNTTGFRREGVVFSEYVDSLDGD-EASLSMAH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + + G+ STG +LDFA++G+ +F +E+P G LTR G F + +G LV+ G Sbjct: 60 ASGRTIDFDSGAVASTGNQLDFAIQGEGFFMIETPEGNQLTRAGSFLRSPEGELVTPEG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD I +P VGE G +S KG+ +A +GLY S + + + Sbjct: 119 FRVLDNGGSAIFLPADQGPIAVGEDGTLSAKGQPLAQLGLYEPQNSTSISLQAGTRFAVP 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E+ V +G +E SN + + E+ +M+ + + + T +D ++ + I Sbjct: 179 EGTVPAEN---ARVMQGAVEQSNVDPVREIARMVEVQRAYELGQTFLDREDERIRNVIST 235 Query: 241 I 241 + Sbjct: 236 L 236 >gi|182679722|ref|YP_001833868.1| flagellar basal body rod protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635605|gb|ACB96379.1| flagellar basal body rod protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 240 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 135/242 (55%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ + L+ Q+ LE+RL+T+A N++N G+R V FS ++ +++ Sbjct: 1 MQSNLYVSLSGQVMLERRLTTIATNIANQSVAGYRAEDVNFSTILSKTD---KYPVAYAG 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G+ ++S+E G T LD A++GD WFA+++P G + TRDGR + G LVS Sbjct: 58 TGRTHISREAGLLSKTDNPLDVAIQGDGWFAMQTPAGTVYTRDGRMHMQATGELVSVD-N 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +P+LD + P+ + + + G I+Q G+ I +GL+ +D + NSG+ + Sbjct: 117 HPILDAGNTPLLVDPDAGPITIAKDGMITQNGRQIGAIGLFQLDDNAKLQHYHNSGVLSD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + D + + +G++E +N N + E+ ++I +++ F I+T ++ +E S+ ++I+ Sbjct: 177 RQGVAVLDFTANGIAQGYVESANVNPILELSKLITVSRSFEQISTAMENSESSLRDSIKT 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|238782794|ref|ZP_04626823.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] gi|238716217|gb|EEQ08200.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] Length = 260 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + + Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSTEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S E GS T D A++G+ +F ++ G TRDG F Sbjct: 61 TIPSGLQLGTGVRPVSTERLHSQGSLNQTSNSKDLAIQGNGFFQIQLADGTTAFTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ +G LV++SG YPV I +P E VG G +S + + + L Sbjct: 121 QIDQNGQLVTSSG-YPVQPA----ITLPPDAETLTVGNDGIVSVTVQGQTAPQQVGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE TP + SG T+++G++E SN N E+ MI Sbjct: 176 STFINDSGLESIGENLYRETQSSGAPNETTPGLNGSG-TLRQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQRLTQ 259 >gi|328543157|ref|YP_004303266.1| flagella basal body rod protein [polymorphum gilvum SL003B-26A1] gi|326412903|gb|ADZ69966.1| Flagella basal body rod protein [Polymorphum gilvum SL003B-26A1] Length = 245 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 135/248 (54%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + I L+ Q+ L ++L A+NM+N +T GF+ ++ F E V + D K Sbjct: 1 MENAQLISLSRQVTLRRQLDVAANNMANMNTSGFKAQRLTFEEYVMPVARASEFKGGDMK 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V + + GS I TG LD A++GD W A+++ G TR+G + + G+LV Sbjct: 61 LSYVQDYQTITNFLSGSIILTGNPLDLAVDGDGWLAVQTEDGEAYTRNGALHLDNTGTLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 +A G+ PVL PIQ ++D ++ + G IS + + + L + D Q N+ Sbjct: 121 TAEGR-PVLTDGG-PIQFTREDGKIDISDDGTISTELGLRGRLRLVTFDQPQNARAIGNN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + + P + ++ V V +G LE+SN + E+ Q+I +T+K+ +++ L++++++ + Sbjct: 179 LLLYDDP----QPVTRVKVIQGGLENSNVQGVVEVTQIIDITRKYETVSKLLNQSDELLR 234 Query: 236 EAIRNIAS 243 +AI + + Sbjct: 235 QAIERLGT 242 >gi|269792757|ref|YP_003317661.1| flagellar basal-body rod protein FlgG [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100392|gb|ACZ19379.1| flagellar basal-body rod protein FlgG [Thermanaerovibrio acidaminovorans DSM 6589] Length = 262 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---S 57 M S G +A + L V+ N++N +T GF+ ++ F +++ I + + S Sbjct: 1 MIRSLWSGATGMIAQQTNLDVVSHNLANVNTAGFKKLRADFQDLMYQIDREPGAPVEPAS 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V +G + G+ TG D A+EGD +F + P G TRDG + Sbjct: 61 MVPNGIQVGLGSRVSGTSRIMGQGNMQVTGNPTDVAIEGDGFFQVTMPDGTVAYTRDGAW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ +G +V+A G + +P + + G++S Q + I + L Sbjct: 121 RIDGNGQIVTADGYLL-----EPAVTVPNNAKEIIISPTGQVSVLLPGDQNPQEIGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + I P E+ G T+ + LE +N + EM MI Sbjct: 176 ARFVNPGGLKALGKNLFIETPASGAPIVGNPGEEGLGTTI-QRTLEMANVQVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ +L N+ Sbjct: 235 VAQRAYEANSKTIATADE-LLRIANNL 260 >gi|108563958|ref|YP_628274.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPAG1] gi|207092034|ref|ZP_03239821.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPKX_438_AG0C1] gi|208435465|ref|YP_002267131.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|210135763|ref|YP_002302202.1| flagellar basal body rod protein FlgG [Helicobacter pylori P12] gi|217031740|ref|ZP_03437244.1| hypothetical protein HPB128_155g53 [Helicobacter pylori B128] gi|254780116|ref|YP_003058223.1| flagellar basal body rod protein FlgG [Helicobacter pylori B38] gi|298737122|ref|YP_003729652.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] gi|107837731|gb|ABF85600.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1] gi|208433394|gb|ACI28265.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|210133731|gb|ACJ08722.1| flagellar basal-body rod protein [Helicobacter pylori P12] gi|216946587|gb|EEC25187.1| hypothetical protein HPB128_155g53 [Helicobacter pylori B128] gi|254002029|emb|CAX30288.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Helicobacter pylori B38] gi|298356316|emb|CBI67188.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] gi|307638271|gb|ADN80721.1| Flagellar basal-body rod protein [Helicobacter pylori 908] gi|317010275|gb|ADU80855.1| flagellar basal body rod protein FlgG [Helicobacter pylori India7] gi|317011821|gb|ADU85568.1| flagellar basal body rod protein FlgG [Helicobacter pylori SouthAfrica7] gi|325996863|gb|ADZ52268.1| Flagellar basal-body rod protein [Helicobacter pylori 2018] gi|325998456|gb|ADZ50664.1| Flagellar basal-body rod protein [Helicobacter pylori 2017] Length = 262 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + LA + + T ++N++N +T GF+ + F+++ S Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ + G+LV++ G + I +P+ N+G G +S VI + L Sbjct: 121 KLDEQGNLVTSEGYLLI-----PQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ I P G +++GFLE SN + EM +I Sbjct: 176 ANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQGLG-KLRQGFLELSNVRLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 235 TAQRAYEANSKSIQTAD-AMLQTVNSL 260 >gi|222053732|ref|YP_002536094.1| flagellar basal-body rod protein FlgG [Geobacter sp. FRC-32] gi|221563021|gb|ACM18993.1| flagellar basal-body rod protein FlgG [Geobacter sp. FRC-32] Length = 262 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + + A + + VA+N++N +T GF+ + F +++ GA + Sbjct: 1 MIRALWTAASGMQAQQLNIDVVANNLANVNTTGFKKSRADFHDLMYQSMKTSGAPSTNAT 60 Query: 54 QKISFVASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + + G G+ TG ELD A+EGD +F ++ P G TR G F Sbjct: 61 QIPTGIQVGLGSKPAAVTKIFTTGNVTQTGNELDVAIEGDGFFQIQMPDGSTEYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGL 160 K G +V++ G YP+L + IP +G G +S Q G+ + T+ L Sbjct: 121 KKDSQGRVVTSEG-YPLLPE----VVIPNNTTSITIGNDGTVSVIQSGQTSPTSVGTIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E T ++ G T+ +G+LE SN + EM MI Sbjct: 176 ATFSNPAGLSSQGHNLFKETESSGAATTGTSGQNGIG-TLSQGYLEMSNVSVAEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + ++ ML+ N+ Sbjct: 235 VGQRAYEINSKAVQAADE-MLQTANNL 260 >gi|307546966|ref|YP_003899445.1| flagellar basal body rod protein FlgG [Halomonas elongata DSM 2581] gi|307218990|emb|CBV44260.1| flagellar basal body rod protein FlgG [Halomonas elongata DSM 2581] Length = 260 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 112/265 (42%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + + +L +++N++N +T GF+ + F +++ + + Sbjct: 1 MINSLWTAKTGLESQQVKLDVISNNLANVNTNGFKRSRAVFEDLLYQNLRQPGAQNNVQN 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V +G ++ E G +TG D A+ G +F + P G TRDG F Sbjct: 61 RLPSGMQVGTGVRPVATERLHTQGGLENTGNSRDLAINGKGFFQVRMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 ++ ++G +V+A+G YP+ I IPQ ++GE G + S + + + + Sbjct: 121 QLDENGQMVTANG-YPLEPA----IIIPQNALSVSIGEDGIVSITEPGSSESNEVGQISV 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + RE + P P + +G + +G++E SN N + EM MI Sbjct: 176 SSFVNPTGLESIGGNLYRETTASGPRNEGIPGMNGAG-RLSQGYVETSNVNVVEEMVGMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 QTQRAYEINSKAVQTSDEMLARLTQ 259 >gi|209964689|ref|YP_002297604.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] gi|209958155|gb|ACI98791.1| flagellar basal-body rod protein FlgF [Rhodospirillum centenum SW] Length = 240 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ I L+ Q A+ +++ VA+N++N +T GF++ + F E + + +++SFV Sbjct: 1 MENVLYIALSRQEAMRRQMDVVANNIANMNTSGFKSQRPLFLEYL-ERPDRRQERMSFVQ 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G T LD AL GD +FA+E+ G TR G F++ D LV +G Sbjct: 60 DYGLMRNLQAGPVTVTDNPLDVALRGDGYFAVETLAGPRYTRAGGFQLNTDRELVDRNG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVL A I IP + G I + +A + + S D Q S Sbjct: 119 LPVLSDAGARIVIPDGANQIRIKGDGSIETEQGPLARLKVVSFDDEQKMQELGGGLYSTE 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+E V +G LE SN + E QMI + + + + +ID + + AIR Sbjct: 179 QEERPVE---KPEVTQGALEGSNVQPIVETTQMIDVLRAYQNTQRMIDSEHERLRTAIRQ 235 Query: 241 IA 242 + Sbjct: 236 LG 237 >gi|114330363|ref|YP_746585.1| flagellar basal body rod protein FlgG [Nitrosomonas eutropha C91] gi|114307377|gb|ABI58620.1| flagellar basal-body rod protein FlgG [Nitrosomonas eutropha C91] Length = 260 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + ++ +A+N++N T GF+ ++ F +++ + S Sbjct: 1 MVRSLWISKTGLDAQQTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIRQPGAQSSERT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG D A++G+ +F + P G TRDG F Sbjct: 61 RLPSGLQLGTGVRPVATENIFLQGNLQQTGNTRDVAIQGEGFFQILLPDGTLAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + DG LV+ASG +P+ I IP +G G + S + + L Sbjct: 121 QSDQDGQLVTASG-FPLQPS----ITIPPNTLSITIGRDGTVSVLTPGSATPLPVGNIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNI------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G R + + P P + G+ + +GF+E SN N + E+ +MI Sbjct: 176 TSFINPAGLQRFGENLYLETMSSGVPNPGIPGTNGIGL-LNQGFVETSNVNVVEELVEMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 235 QTQRAYEINSRSIQTSDQMLSRLTQ 259 >gi|317492426|ref|ZP_07950855.1| flagellar basal-body rod protein FlgG [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919765|gb|EFV41095.1| flagellar basal-body rod protein FlgG [Enterobacteriaceae bacterium 9_2_54FAA] Length = 260 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTDNSRDVAIKGQGFFQVQQPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV++SG V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTSSGFQVV-----PAITIPANATKLTIGRDGIVSVNQQGQTATTQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFINDAGLESVGENLYQETESSGAPTESTPGLNGAGM-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQRLTQ 259 >gi|297570292|ref|YP_003691636.1| flagellar basal-body rod protein FlgF [Desulfurivibrio alkaliphilus AHT2] gi|296926207|gb|ADH87017.1| flagellar basal-body rod protein FlgF [Desulfurivibrio alkaliphilus AHT2] Length = 244 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 8/236 (3%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ LA E+RL VA+N++N DT G++ V F E++ + + + + + Sbjct: 12 GVETMLAQERRLDQVANNLANVDTAGYKKDAVSFWEMLYQANAERQRVGKAL---RVHTD 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 + G TG LD A++G+ +F +++ +GI TR G F++ G L + G + D Sbjct: 69 HQQGHVDPTGNPLDLAIQGEGFFRIQTDQGIRYTRAGSFQLDPMGQLRTPEGGLVLGD-- 126 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 PI + + F V G + G + + + V+ ++ + + Sbjct: 127 GGPIVVDGNN--FAVERDGRVMVDGVQVNQLEVVGVNDLTNLIKEGRNLFRLAAEGEEMP 184 Query: 188 -DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + V++GFLE SN NS+ EM MI L + + + +I + +AI + Sbjct: 185 LEAMNFQVRQGFLEKSNVNSVEEMTTMIDLQRSYEAQQKMIQAIDDMDEQAISRVG 240 >gi|15612557|ref|NP_224210.1| flagellar basal body rod protein FlgG [Helicobacter pylori J99] gi|4156115|gb|AAD07066.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN) [Helicobacter pylori J99] gi|317015022|gb|ADU82458.1| flagellar basal body rod protein FlgG [Helicobacter pylori Gambia94/24] Length = 262 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + LA + + T ++N++N +T GF+ + F+++ S Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDIAITGKGFFQVQLPDGTTAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ + G+LV++ G + I +P+ N+G G +S VI + L Sbjct: 121 KLDEQGNLVTSEGYLLI-----PQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ I P G +++GFLE SN + EM +I Sbjct: 176 ANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQGLG-KLRQGFLELSNVRLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 235 TAQRAYEANSKSIQTAD-AMLQTVNSL 260 >gi|312880335|ref|ZP_07740135.1| flagellar basal-body rod protein FlgG [Aminomonas paucivorans DSM 12260] gi|310783626|gb|EFQ24024.1| flagellar basal-body rod protein FlgG [Aminomonas paucivorans DSM 12260] Length = 262 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G +A + L V++N++N +T G++ ++ F +++ I + + Sbjct: 1 MIRSLWSGATGMIAQQTNLDVVSNNLANVNTSGYKKVRADFQDLMYQIDREPGAPVEPAS 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G + G+ +TG D A+EGD ++ + P G TRDG + Sbjct: 61 MIPTGIQVGLGTRVVGTSRIMGEGNIQTTGNPTDVAIEGDGFYQVTLPDGTLAYTRDGAW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G +V++ G I IP + + G++S + I + L Sbjct: 121 RIDGNGQIVTSDGFLL-----EPAITIPDNMKELIISTTGQVSVLLPGDPNPQEIGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + I P +D G T+ + LE +N + EM MI Sbjct: 176 ARFVNPGGLRASGKNLFLETPASGAPIVGNPGDDGLGATL-QRVLEMANVQVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ +L N+ Sbjct: 235 VAQRAYEANSKTISTADE-LLRIANNL 260 >gi|296274032|ref|YP_003656663.1| flagellar basal-body rod protein FlgG [Arcobacter nitrofigilis DSM 7299] gi|296098206|gb|ADG94156.1| flagellar basal-body rod protein FlgG [Arcobacter nitrofigilis DSM 7299] Length = 263 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 107/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + A + ++ ++N+SN +T GF+ + +F +++ N Sbjct: 1 MIKGMYTAASGMYAQQHQIDVTSNNISNVNTAGFKKDRAEFEDLMYQRLNYTGGSTSQDT 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V S E G TG +LD A+EG +F + P G TR+G+F Sbjct: 61 RNPTGIDVGSGVRISGIQKSFEEGDLEPTGNDLDIAIEGKGFFRVTLPNGETAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 KV DGS+V+ +G I IP N+ G I +Q+ + + + L Sbjct: 121 KVNSDGSIVNGNGYLL-----DPEIVIPDNLTKINISNDGLITATDPTTQEEQEVGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + R + I P E+ G +++GF+E SN + EM +I Sbjct: 176 SDFVNPAGLAPMGESLFRATTASGDPIDANPTEEQFG-NLRQGFVEMSNVKLVSEMVDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + I +K +L + + Sbjct: 235 TAQRAYEANSKAIQTADK-LLTIANQLKT 262 >gi|239907793|ref|YP_002954534.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] gi|239797659|dbj|BAH76648.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] Length = 261 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 24/259 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M+ S + L+ E RL+ A+N++N +T G++ +V F + +D Sbjct: 1 MEMSMYSAVFGALSTETRLNISANNLANVNTTGYKRDRVSFEDTFYRYAHDYHMDPRGDI 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRD 103 I+ + + G+ +TG LD A++G +F + + +G TR+ Sbjct: 61 RQKQLLPRADLIAKPRLAMQQIDFAQGALTATGNPLDLAIQGPGFFKVSAGQGNSYYTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F + +G LV+ PVL PIQ+P+ +VG G + G + + + +V Sbjct: 121 GAFHRSAEGMLVNDQ-DMPVLGGGG-PIQLPEG--RISVGGDGAVYVDGAQVGQVDVVTV 176 Query: 164 DMSQGFVRRENSGISPNIPPTPLED---LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ + P T E V +GFLE N + EM MI + F Sbjct: 177 QNPDALMKYGANLYMPQTGATVQEGVLRAGTTEVAQGFLEKPNVEVVEEMVSMIETQRTF 236 Query: 221 NSITTLIDENEKSMLEAIR 239 + ++ + + +AIR Sbjct: 237 EAYQKVMSSSNELDTKAIR 255 >gi|261840277|gb|ACY00043.1| flagellar basal body rod protein FlgG [Helicobacter pylori 52] Length = 262 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + LA + + T ++N++N +T GF+ + F+++ S Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRTDFNDLFYQAMQYAGTNTSNTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ + G+LV++ G + I +P+ N+G G +S VI + L Sbjct: 121 KLDEQGNLVTSEGYLLI-----PQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ I P G +++GFLE SN + EM +I Sbjct: 176 ANFVNPAGLHSMGDNLFSITNASGEAIVGNPDSQGLG-KLRQGFLELSNVRLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 235 TAQRAYEANSKSIQTAD-AMLQTVNSL 260 >gi|144897831|emb|CAM74695.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Magnetospirillum gryphiswaldense MSR-1] Length = 273 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 119/240 (49%), Gaps = 7/240 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 M+ + I L+ Q AL ++L +A NM+N +T G+++ ++ F E + ++ +K+S Sbjct: 30 MENTSYIALSRQNALWRQLDVIAGNMANANTPGYKSEQMMFREYLMDTRSSDRATGKKLS 89 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 +V G+F T LD AL D +F +E+ G+ TR+G F++ + G LV++ Sbjct: 90 YVQDIGLLRDTREGAFTKTDNPLDLALHNDGFFQVETEAGMRYTRNGHFRLDEGGMLVNS 149 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G V+D PI + + V G +S + ++A + + Q + +S Sbjct: 150 QGA-AVMDTGDNPIILAPNETRITVTPDGSVSTENGIVAKIKVVRFANDQDMRKIGDSLY 208 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P + + ++ +G +E+SN + E+ +M + +++ ++ ++++ + ++A Sbjct: 209 ETTQDPDTI---ARPSIVQGMMEESNVQPVVEITKMTEVLRQYQALQNILEKEHERQMKA 265 >gi|154249604|ref|YP_001410429.1| flagellar basal-body rod protein FlgG [Fervidobacterium nodosum Rt17-B1] gi|154153540|gb|ABS60772.1| flagellar basal-body rod protein FlgG [Fervidobacterium nodosum Rt17-B1] Length = 261 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + ++ TV++N++N DT G++ IK +F +++ + + + Sbjct: 1 MINSLYTAATGMWTQQFKMDTVSNNIANVDTAGYKKIKAEFQDLIYSYSKNAGAATAQNS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G+ +TG LD A+ GD +F ++ G I TRDG+F Sbjct: 61 TTPTGIYVGHGVKLAATTKIFTQGNLENTGNALDLAITGDGFFQIQLQDGRIAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLY 161 K+ G +V+A+G S I +PQ V G +S + + + T+ L Sbjct: 121 KLDSQGRVVTANGLLL-----SPAIVVPQNAVSLTVSPDGIVSVELADGTIQQLGTITLV 175 Query: 162 SVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHL 216 G ++ + N P+E + G T+ +G++E SN + + EM MI Sbjct: 176 RFVNPAGLKSIGDNLYLQTNASGEPIEGVGGQDGFGTIMQGYVEKSNVDVVKEMVDMITA 235 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + A Sbjct: 236 MRAYEFNSRSIITADQMLQTASN 258 >gi|109946869|ref|YP_664097.1| flagellar basal body rod protein FlgG [Helicobacter acinonychis str. Sheeba] gi|109714090|emb|CAJ99098.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis str. Sheeba] Length = 262 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + LA + + T ++N++N +T GF+ + F+++ S Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAIVGKGFFQVQLPDGTTAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ + G+LV++ G + I +P+ N+G G +S VI + L Sbjct: 121 KLDEQGNLVTSEGYLLI-----PQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ I P G +++GFLE SN + EM +I Sbjct: 176 ANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQGLG-KLRQGFLELSNVRLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 235 TAQRAYEANSKSIQTAD-AMLQTVNSL 260 >gi|146277706|ref|YP_001167865.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] gi|145555947|gb|ABP70560.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] Length = 262 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID--------- 53 + ++ A + R+ +++N++N +T GF+ + F ++ Sbjct: 4 NAMHVAKTGLNAQQTRMQVISNNLANVNTTGFKRDRANFESLLYQTWKPGGAQTSEATAM 63 Query: 54 QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 S V +G +S E GS +T LD A++G +F + P G + TR+G F Sbjct: 64 TSPSAVGTGVRVVSTEKLYTQGSLANTDNALDLAIDGPGFFQVLLPDGRMGYTRNGTFSQ 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYS 162 +G++ + SG Y V IQIP+ + G +S + + + + + + Sbjct: 124 NAEGTITTPSG-YVVQPE----IQIPEGAVSVTISADGIVSVLMPDETEAQEVGQITIAT 178 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G E + P+E G + +G LE SN N + E+ MI Sbjct: 179 FANPRGLQPVGETFAVETAASGEAAIGNPVEPGFG-KLVQGALESSNVNVVQELVDMIET 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ M + Sbjct: 238 QRAYEVNSKSISASDEMMQYLANKL 262 >gi|242278484|ref|YP_002990613.1| flagellar basal body rod protein FlgG [Desulfovibrio salexigens DSM 2638] gi|242121378|gb|ACS79074.1| flagellar basal-body rod protein FlgG [Desulfovibrio salexigens DSM 2638] Length = 260 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M S +A + + +++N++N +T GF+ +V+F +++ N Sbjct: 1 MMRSLWTAATGMVAQQTHIDVLSNNLANVNTQGFKKSRVEFEDLMYQTMRIAGSETEGGN 60 Query: 51 DIDQKISFVASGKEYLS---KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + KE GSF STG LD A+EG+ +F ++ TR G FK Sbjct: 61 RLPTGMQIGMGVKEVSIHKFFSQGSFESTGNPLDIAIEGNGFFLVDRNGEDAYTRSGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVI--ATMGLYS 162 + DG LV+++G YP+ +P + V E G I+ G + A + +Y Sbjct: 121 LDSDGRLVTSNG-YPLQPEF----TVPAEAVNVVVSEDGHIAALDKNGTELSSADITIYD 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + E I TP ED G T+ +G+LE SN + EM +I Sbjct: 176 FINEAGLNAVGKNLYVETEASGAAIQGTPGEDNFG-TLAQGYLEGSNVELVDEMVGLIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + + I ++ + AI Sbjct: 235 QRAYETNSKAITTSDSMLQTAIN 257 >gi|218887603|ref|YP_002436924.1| hypothetical protein DvMF_2517 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758557|gb|ACL09456.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 259 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 106/259 (40%), Gaps = 20/259 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 MQ L L E R++ +++N++N +T G++ + F + + +D Sbjct: 1 MQEGMLSSLFGALTNEHRMNNISNNLANVNTTGYKRDVISFKDTMQLFAHDQIMEPIANV 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 ++ + E GS TG LD A+ G+A+F + +P G TR+G Sbjct: 61 RSKKLFPEPMHVARPRIAVAHTDFEQGSMRYTGNPLDVAISGNAFFKVRTPEGEFYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F T DG LV+A G + V I +P E + + G+I G ++ + + +V+ Sbjct: 121 NFIQTADGQLVTAMG-HAVQGDGGD-IALPPG-EAVQISDDGQIFAGGALVGQLNMVTVN 177 Query: 165 MSQGFVRRENSGISPNIPPTPLE-DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + E V +G+LE SN + EM MI ++F + Sbjct: 178 DLTALEKLGGNMYRLRPGSNAGEVPAERAYVAQGYLEASNVEVVSEMVNMIEAQRQFEAY 237 Query: 224 TTLIDENEKSMLEAIRNIA 242 ++ + EA + + Sbjct: 238 QKVMQTTDSIDREATQKVG 256 >gi|317013400|gb|ADU84008.1| flagellar basal body rod protein FlgG [Helicobacter pylori Lithuania75] Length = 262 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 104/266 (39%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + LA + + T ++N++N +T GF+ + F+++ S Sbjct: 1 MLRSLYSATSGMLAQQTHIDTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 LSPDGMEVGLGVRPSAITKMFSQGSPKETENNLDVAITGKGFFQVQLPDGTTAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ + G+LV++ G + I +P+ N+G G +S VI + L Sbjct: 121 KLDEQGNLVTSEGYLLI-----PQITLPEDTTQVNIGVDGTVSVTQGLQTTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGIS-PNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G ++ S N + +++GFLE SN + EM +I Sbjct: 176 ANFVNPAGLHSMGDNLFSITNASGNAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 236 AQRAYEANSKSIQTAD-AMLQTVNSL 260 >gi|217977819|ref|YP_002361966.1| flagellar basal body rod protein [Methylocella silvestris BL2] gi|217503195|gb|ACK50604.1| flagellar basal body rod protein [Methylocella silvestris BL2] Length = 241 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 141/243 (58%), Gaps = 4/243 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+ + L+ +AL++RL+T+A N++N T G+R +V+F ++ + ++FV+ Sbjct: 1 MQSGLYVSLSGLVALDRRLTTIAANVANQSTPGYRAEEVEFKSLLSKAGAN---PVAFVS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G+ ++S+ G I T LD A++G W AL++P G + T+DGR + + G+LVS G Sbjct: 58 NGESFISRRGGVPIKTDGPLDVAVQGHGWLALKTPDGTVYTKDGRMHMEESGALVSVDG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD + PI + + + G I+Q + +G++S+D R NSG+ + Sbjct: 117 FPVLDAGATPILLDPAAGPPTIAQDGMITQNSHQVGAIGIFSLDGQAKLKRYTNSGVMSD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +P T D S V +GF+E +N N + EM ++I +++ F +I + + +E S+ +AI+ Sbjct: 177 LPATAELDFSNNGVHQGFIEGANINPILEMAKLIMVSRAFENIHSATEGSESSLKDAIKT 236 Query: 241 IAS 243 + + Sbjct: 237 LGA 239 >gi|154686045|ref|YP_001421206.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens FZB42] gi|154351896|gb|ABS73975.1| FlgE [Bacillus amyloliquefaciens FZB42] Length = 258 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 118/257 (45%), Gaps = 20/257 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQ 54 M S G++ + +L + +N++N +TVGF+ +V F +++ G+ + Q Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQ 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 A+ + G+ +T + D A++GD +F + + GI+ TR G F + G+L Sbjct: 61 IGLGAATSSIDVVHSTGAPQATQNKTDLAIDGDGYFQINTGAGIVYTRAGNFGKDNQGNL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKVI---ATMGLYSVDMSQGF 169 V+ G Y + + I IP + +++G G + + G + +GL + S G Sbjct: 121 VTTDGYY-LEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDEVHDAGQIGLVTFPNSAGL 179 Query: 170 VRRENSGI-------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + + + TP E+ +G + G+LE SN + E +MI + F S Sbjct: 180 EKIGGNLYRESLSSGAASAVTTPGENGTG-KLLAGYLEMSNVDLTDEFTEMIVAQRGFQS 238 Query: 223 ITTLIDENEKSMLEAIR 239 + +I +++ + E + Sbjct: 239 NSKIITTSDEILQELVN 255 >gi|302037628|ref|YP_003797950.1| flagellar basal-body rod protein FlgG [Candidatus Nitrospira defluvii] gi|300605692|emb|CBK42025.1| Flagellar basal-body rod protein FlgG [Candidatus Nitrospira defluvii] Length = 263 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A + + T+A+N++N +T F+ + +F +++ I+ S V Sbjct: 1 MIRAMWTAATGMTAQQLNVDTIANNLANVNTNAFKRSRAEFGDLLYQIQRLPGTNASNVG 60 Query: 61 SGKEYLSKE-------------VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + G+ TG +LD A++G +F + P G + TR+G F Sbjct: 61 VFPVGVQVGGGVRPITVAKEWVQGNMRQTGNDLDLAIDGAGFFQVTRPDGTIMYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K + G+LV+ G D + I IP +VG+ G +S + + + L Sbjct: 121 KRDNVGNLVTGDG-----DQLNPVITIPSGALKIDVGQDGTVSVLLPGVTQASQVGQIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLED------LSGVTVKRGFLEDSNANSMYEMGQMI 214 D G V + + P + T+++GFLE SN N EM MI Sbjct: 176 VRFDNPSGLVAMGGNLFLDSFASGPAQQGTGGFSTGFGTLQQGFLESSNVNLAEEMVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ M + N+ Sbjct: 236 IAQRSYEINSKTIQASDEMM-QIANNL 261 >gi|196247630|ref|ZP_03146332.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] gi|196212414|gb|EDY07171.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] Length = 264 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 109/264 (41%), Gaps = 28/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G+ A + +L + +N++N +T GF+ + F +++ G Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFQDLMSQTISGASGPSAASG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 V G + GS +TG LD A+ GD +F + G + TR G F Sbjct: 61 GTNPRQVGLGSQLAAIDTIHTQGSLQTTGRVLDLAISGDGFFIVGDANGNNQMYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLY 161 + +G +V+A+G Y + D P++I + ++G G + + +++ T+ L Sbjct: 121 YLDSEGYIVNANGLYLLGD--GGPLKIDSNAKSLSIGADGNVTIVDDTGNLQLVGTIQLA 178 Query: 162 SVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + N+ + P + +G + G LE SN + E +MI Sbjct: 179 KFANPDGLEKEGNNLFRETVNSGDPQIGVPGANGTG-KLVSGALEMSNVDLAEEFTEMIV 237 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + F + T +I +++ + E + Sbjct: 238 AQRGFQANTRIITTSDEILQELVN 261 >gi|294635612|ref|ZP_06714089.1| flagellar basal-body rod protein FlgG [Edwardsiella tarda ATCC 23685] gi|291091064|gb|EFE23625.1| flagellar basal-body rod protein FlgG [Edwardsiella tarda ATCC 23685] Length = 260 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQLGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+ASG S I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTASGFQV-----SPAITIPANATSMTIGRDGIVSVTVQGQAAAQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 STFINDAGLESVGENLYQETDSSGAPTESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 235 QTQRAYEINSKAISTSDQMLQRLTQ 259 >gi|237750021|ref|ZP_04580501.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] gi|229374432|gb|EEO24823.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] Length = 262 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 113/266 (42%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S L + ++ T ++N++N +TVGF+ + +F+++ + S Sbjct: 1 MMRSLYTATTGMLGQQLQIDTTSNNIANVNTVGFKRQRAEFNDLFYQTLQFAGTQTSETT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V +G GS T LD A+ G +F ++ P G I TR G F Sbjct: 61 LTPTGIEVGVGVRTGAINRIYSQGSPKETENPLDVAIMGKGFFPIQLPDGNIAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ D G++V++ G I +P + + N+G G +S + +V+ + L Sbjct: 121 KLDDQGNIVTSEGYLV-----QPQITVPPEAQSINIGADGTVSVTLGNNGQAEVLGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ + N P+E ++G ++ GFLE SN + EM +I Sbjct: 176 VNFVNPAGLHGLGDNLYMNTNASGEPIEGIAGQDGLGQIRAGFLELSNVRLVSEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ + + Sbjct: 236 GQRAYEANSKSIQTAD-SMLQTVNGL 260 >gi|150020364|ref|YP_001305718.1| flagellar basal-body rod protein FlgG [Thermosipho melanesiensis BI429] gi|149792885|gb|ABR30333.1| flagellar basal-body rod protein FlgG [Thermosipho melanesiensis BI429] Length = 261 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 112/263 (42%), Gaps = 29/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 M A + +L T+++N++N DT G++ +K +F +++ +N Sbjct: 1 MINGLYTAATGMWAQQFKLDTLSNNIANVDTAGYKKVKTEFQDLLYDYSKNAGAATAQNS 60 Query: 52 IDQKISFVASGK----EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I +V G G+ TG LD A+ GD +F ++ G I TRDG+F Sbjct: 61 IHPTGLYVGHGTKLSATTRIFTQGNLERTGNSLDIAISGDGFFQIQLQDGRIAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKG--KVIATMGLY 161 K+ +G +++++G S I +PQ N+ G ++ Q G + + T+ L Sbjct: 121 KIDGNGRIITSNGNLL-----SPNIVVPQNAVAINISPDGIVTAELQDGTLQNLGTITLV 175 Query: 162 SVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHL 216 G ++ + P+E +G ++ +G++E SN + + EM MI Sbjct: 176 RFINPSGLKAIGDNLYLETPASGAPVEGTAGQDGFGSILQGYVEKSNVDIVKEMVDMISA 235 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + + ++ + A Sbjct: 236 MRAYELNSRTVQTADEMLRTASN 258 >gi|45657204|ref|YP_001290.1| flagellar basal body rod protein FlgG [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600442|gb|AAS69927.1| FlgG [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 265 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 35/267 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKIS 57 M S +A + + T+++N++N +T GF+ + F ++V + +S Sbjct: 1 MMRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVS 60 Query: 58 FVASGKEYLS----------KEVGSFISTGTELDFALEGD-AWFALESPRGI-ILTRDGR 105 + +G E+GSF +TG +LD A+ G+ +F ++ P G TRDG Sbjct: 61 EIPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQMPDGSFAFTRDGS 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKD--EIFNVGEKGEISQ------KGKVIAT 157 FK+ + +V+++G P+ +P+ + E+GE++ + VI Sbjct: 121 FKIDSNQQVVTSNGYLL-----EPPLILPEGAILNTLMISEQGEVTVKVGADIRPIVIGQ 175 Query: 158 MGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 + LY G + +E P IP TP + G V +GFLE SN + EM Sbjct: 176 VELYRFVNPAGLQAIGKNLFQETVASGPEIPGTPGMEGFG-NVLQGFLEMSNVKIVEEMV 234 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S + I ++ + AI Sbjct: 235 AMIVAQRAYESNSKAIQTSDNMLSTAI 261 >gi|315185552|gb|EFU19321.1| flagellar basal-body rod protein FlgG [Spirochaeta thermophila DSM 6578] Length = 264 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 101/266 (37%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + + + + TVA+N+SN +T GF+ +V F +++ + V Sbjct: 1 MMRSLWTAASGMVGQQYHIDTVANNLSNVNTTGFKKNRVDFQDLIYQTVRMAGTPATEVT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 G+ T D A++G+ +F + G TRDG F Sbjct: 61 VVPTPTQVGHGVRVAASSKIFTQGALQHTDNVSDLAIQGEGFFRVLLYDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ +G LV+++G + I +P+ + +V E G ++ + + Sbjct: 121 KIDSNGQLVTSNGYRLI-----PEIVLPEGFIADTLSVSEDGRVTVKVPGQDDPVEVGQI 175 Query: 159 GLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 +Y G + ++ N P+ G + FLE SN + + EM +M Sbjct: 176 QIYRFVNPSGLLAVGDNLYKVTNASGDPIGGRPGFDGMGKLLHKFLEMSNVSVVNEMVEM 235 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + ++ + A+ Sbjct: 236 IVAQRAYELNSKAVQTSDSMLGTAVN 261 >gi|89056685|ref|YP_512136.1| flagellar basal body rod protein FlgF [Jannaschia sp. CCS1] gi|88866234|gb|ABD57111.1| flagellar basal-body rod protein FlgF [Jannaschia sp. CCS1] Length = 240 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 5/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L L + ++ VA+N++N T GFRT + F+E + A ND A Sbjct: 1 MDNPGYASLTRLSGLMREMAVVANNIANISTTGFRTEGLVFAEHIAATGNDSPSLSMGAA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ +S + G+ T +E D A+EG+ +F + +P G +L+R G F D G LV+ G Sbjct: 61 IGRS-ISAQQGALEQTASEFDLAIEGEGFFLIGTPDGEVLSRAGAFIRNDAGELVTPDGY 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y +LD PI +P + V G IS G+ + +GLY + RR + + Sbjct: 120 Y-LLDAGGAPIFVPPQAGSVAVSSDGTISADGQPLTVVGLYLPNDPLELSRRSGTAFTVE 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P ++ + +GFLE SN + + ++ +MI + + + + +D + + + +R Sbjct: 179 SGVQPADN---ARILQGFLEQSNVDPVAQIARMIEVQRAYELGQSFMDAEDNRIRDFLRT 235 Query: 241 IA 242 Sbjct: 236 AG 237 >gi|260574402|ref|ZP_05842406.1| flagellar basal-body rod protein FlgF [Rhodobacter sp. SW2] gi|259023298|gb|EEW26590.1| flagellar basal-body rod protein FlgF [Rhodobacter sp. SW2] Length = 236 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 7/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + + VA+N++N T GFR V F+E V + D + +S Sbjct: 1 MDAAGYTTLTRQSGLMREMQVVANNIANISTTGFRREGVVFAEYVKRM--DGEPSLSMAH 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + S TG DFA++GD +F +E+P+G LTR G F + +G LV+ G Sbjct: 59 ATARNIDLGQASISQTGGAFDFAIQGDGFFLIETPQGQRLTRAGSFTPSAEGELVNPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + +LD PI +P + + E G +S G+ +A +GL+ R + + Sbjct: 118 FRLLDQGGAPIFVPPDAGVVGMSEDGTLSAGGQPLARVGLWQPTDPNTL-RHQGGTLFEA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+ED + +G++EDSN N + E+ +MI + + + +D + + I+ Sbjct: 177 GAMEPVEDG---QILQGYIEDSNVNPISEIARMIEVQRAYELGQKFLDNEDARVRGVIQT 233 Query: 241 IA 242 + Sbjct: 234 LG 235 >gi|307718428|ref|YP_003873960.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192] gi|306532153|gb|ADN01687.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192] Length = 264 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 100/266 (37%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + + + + TVA+N+SN +T GF+ +V F +++ + V Sbjct: 1 MMRSLWTAASGMVGQQYHIDTVANNLSNVNTTGFKKNRVDFQDLIYQTVRMAGTPATEVT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 G+ T D A++G+ +F + G TRDG F Sbjct: 61 VVPTPTQVGHGVRVAASSKIFTQGALQHTDNVSDLAIQGEGFFRVLLYDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ +G LV+++G + I +P+ + V E G ++ + + Sbjct: 121 KIDSNGQLVTSNGYRLI-----PEIVLPEGFIADTLAVSEDGRVTVKVPGQDDPVEVGQI 175 Query: 159 GLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 LY G + ++ N P+ G + FLE SN + + EM +M Sbjct: 176 QLYRFVNPAGLLAVGDNLYKVTNASGDPIGGRPGFDGMGKLLHKFLEMSNVSVVNEMVEM 235 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + ++ + A+ Sbjct: 236 IVAQRAYELNSKAVQTSDSMLGTAVN 261 >gi|254466371|ref|ZP_05079782.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium Y4I] gi|206687279|gb|EDZ47761.1| flagellar basal-body rod protein FlgF [Rhodobacterales bacterium Y4I] Length = 238 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T+ ++ Q L + + +A+N++N+ T G+R + FSE V + +S Sbjct: 1 MGTAGYATISRQSGLMREMRVIANNIANSATTGYRQEGLIFSEFVQSSPGQ--PSVSMSR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S E G +TG DFA+EGD +F +E+P+G LTR G F G LV+ G Sbjct: 59 ANIFNTSMEQGQLTNTGGTFDFAIEGDGFFMIETPQGERLTRSGAFSPNAAGDLVTMDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ +P VG G +S G+++ +GL+ VR + Sbjct: 118 YRVLDAGRAPVFVPPDAGKIEVGADGSLSANGRLLGQLGLFKPVEKHTLVREDGVMFRVE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +E+ V +GFLE SN N++ E+ +MI + + + + + ++ + AI+N Sbjct: 178 GD---IEENFDSKVLQGFLEGSNVNAISEVSRMIDVQRAYEMGQSFLQTEDERIRNAIKN 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|329901232|ref|ZP_08272757.1| Flagellar basal-body rod protein flgG [Oxalobacteraceae bacterium IMCC9480] gi|327549164|gb|EGF33756.1| Flagellar basal-body rod protein flgG [Oxalobacteraceae bacterium IMCC9480] Length = 260 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLEAQQTQMDVISNNLANVSTSGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ T + D A++G +F + P G TRDG F Sbjct: 61 QLPSGLQLGTGVRPVATERIFTQGNLQQTSNDKDVAIQGQGFFQVLLPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ G +V++SG + I IP + VG G IS I + L Sbjct: 121 QIDSQGQMVTSSGF-----VIQPAITIPAAAQSLTVGRDGTISITLQGTAAATQIGALQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN + + E+ MI Sbjct: 176 ATFINPAGLESKGENLYVETGASGTANTNTPGTNGAGI-LSQGYVETSNVSVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 QTQRAYEINSKAISTSDQMLAKL 257 >gi|269138584|ref|YP_003295284.1| flagellar basal body rod protein [Edwardsiella tarda EIB202] gi|267984244|gb|ACY84073.1| flagellar basal body rod protein [Edwardsiella tarda EIB202] gi|304558594|gb|ADM41258.1| Flagellar basal-body rod protein FlgG [Edwardsiella tarda FL6-60] Length = 260 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQLGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+ASG + I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTASGFQV-----TPAITIPANATSMTIGRDGIVSVTLQGQAAAQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 STFINDAGLESVGENLYQETESSGAPTESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 235 QTQRAYEINSKAISTSDQMLQRLTQ 259 >gi|297182936|gb|ADI19085.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0070_15B21] Length = 262 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + A ++ + T A+N++N +T G++ KV F +++ + S Sbjct: 1 MMRALYTAATGMAAQQRNIDTTANNLANVNTTGYKKSKVHFQDLLYHNERTAGVPSSVST 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V G +++ E G+ +TG +LD +++G +F + P GI+ +RDG F Sbjct: 61 QVPVGLHVGHGVKFIGTEKIHTQGNLENTGNDLDLSIDGHGFFQILQPNGIVGYSRDGHF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV+ G I IPQ VG G ++ + I ++ L Sbjct: 121 NIDGMGRLVTNDGMLL-----DPEINIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSIQL 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G N +S + D G T+ +GFLE SN + + EM MI Sbjct: 176 ARFQNPAGLTPLGKNLYVSTPASGNAIVDAPGASSMGTLTQGFLERSNVSLVEEMVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML+ N+ Sbjct: 236 SQRAYEVNSKAIQSADE-MLKNTNNL 260 >gi|315453484|ref|YP_004073754.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179] gi|315132536|emb|CBY83164.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179] Length = 262 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 105/267 (39%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S L + + T ++N++N +TVGF+ + F+++ S Sbjct: 1 MLRSLYSATTGMLGQQTHIDTTSNNIANVNTVGFKKQRADFNDLFYQALQYAGTSTSDTT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 KSPNGIEVGLGVRTSSVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ D G++V+ G + I PQ ++G G +S VI + L Sbjct: 121 KIDDQGNMVTTEGYLLI-----PQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGIS------PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ ++ P I P D G +++GFLE SN + EM +I Sbjct: 176 ANFINPAGLHALGDNLLAVTSASGPAIVGNPNGDGYG-QLRQGFLELSNVRLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 235 TAQRAYEANSKTIQTAD-NMLQTVNSL 260 >gi|94500243|ref|ZP_01306776.1| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65] gi|94427542|gb|EAT12519.1| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65] Length = 261 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 103/266 (38%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A + L+T+++N++N T GF+ + F +++ I+ Sbjct: 1 MHSALWVSKTGLNAQDHGLTTISNNLANVSTTGFKKDRAVFEDLIYQIQRQPGALSSQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V GS T LD A+ G +F + P G I TRDG F Sbjct: 61 RLPSGLQLGTGVKVAGTQKIHTTGSLEETSQPLDLAINGRGFFQIALPDGQIAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G++V++ G I IP + + G +S + I + + Sbjct: 121 HMDAEGNIVNSQGYLL-----EPNITIPDQTNTMTISRDGIVSVTQFGDTTPQEIGQIDV 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + ED G ++++GFLE+SN + EM +MI Sbjct: 176 VDFINPTGLQAVGGNLFLETAASGAPEIGVASEDGFG-SIEQGFLENSNVKVVEEMVKMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + + ++ ++ + +N Sbjct: 235 TVQRAYEMNSKVVSSADQMLQYLAQN 260 >gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protein FlgG [Herbaspirillum seropedicae SmR1] gi|300074139|gb|ADJ63538.1| flagellar basal-body rod FlgG protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + +L +++N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ T + D A++G+ +F + P G TRDG F Sbjct: 61 QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG PI +P VG G + S I T+ + Sbjct: 121 QTDSQGQLVTSSGY-----TLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQV 175 Query: 161 YSVDMSQGFVRRENSGISPNI------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G R + P P + +G + +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLESRGENLYMETAASGAPNPNNPGTNGAGA-LWQGYVETSNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 QTQRAYEINSKAITTSDQMLAKL 257 >gi|312115282|ref|YP_004012878.1| flagellar basal-body rod protein FlgF [Rhodomicrobium vannielii ATCC 17100] gi|311220411|gb|ADP71779.1| flagellar basal-body rod protein FlgF [Rhodomicrobium vannielii ATCC 17100] Length = 241 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 133/243 (54%), Gaps = 5/243 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L+AQ+AL++RL TVA N++N +TVG+R ++KF V+ A Q +FV Sbjct: 1 MQSSLYVALSAQVALQKRLDTVAQNVANANTVGYRGTEMKFDSVLSAAD---AQMTAFVT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S +S G I TG LD AL+G W ++++P G + TRDGR ++T G LVS G Sbjct: 58 SKDGVVSLGAGGLIKTGNPLDVALKGQGWLSVQAPAGRMYTRDGRIQLTTSGMLVSMRG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PVLD P+Q+ + E G ++Q + + +G++ R E G + Sbjct: 117 HPVLDAGGAPMQVDPNGPTPQIAEDGTVTQNNERVGVLGVFVFGSDAKLSRVEG-GFIAD 175 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P D + ++ G++E+SN N++ E ++I++ + F+ + I E + AI++ Sbjct: 176 KPAIAATDPAKSSMASGYVEESNVNAIKETARLIYVQRAFDEAASTIQSVESGLKSAIQS 235 Query: 241 IAS 243 + S Sbjct: 236 LGS 238 >gi|253996317|ref|YP_003048381.1| flagellar basal-body rod protein FlgG [Methylotenera mobilis JLW8] gi|253982996|gb|ACT47854.1| flagellar basal-body rod protein FlgG [Methylotenera mobilis JLW8] Length = 260 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 107/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQTSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ TG + D A++G +F + P G TRDG F Sbjct: 61 QLPSGLQLGTGVRPVATERIFTQGNIQQTGNDKDVAIQGAGFFQVLLPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V G LV++SG PI +P + VG G +S I + L Sbjct: 121 QVDFQGQLVTSSGF-----SVQPPITVPSNAQTLTVGRDGTVSVTLAGSTAVTQIGQLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + TP + +G+ + +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLQGNGENLYVETAASGTANANTPGTNGAGL-LTQGYVETSNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEINSKAITTSDQMLQKLTQ 259 >gi|149912833|ref|ZP_01901367.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. AzwK-3b] gi|149813239|gb|EDM73065.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. AzwK-3b] Length = 237 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ + L Q L + + +A+N++N T G+R + F+E V ++N IS Sbjct: 1 MENTGYTTLTRQSGLLREIQVIANNIANAATTGYREESLIFAEYVKRVEN--GPSISMAT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +S G TG LDFA+EGD +F +E+ G LTR G F ++ G L + G Sbjct: 59 PSARSISSLQGGLQPTGGTLDFAIEGDGFFLIEAADGNRLTRAGSFSLSAAGELATHDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD P+ +P V G IS +G++I +GL +R + + Sbjct: 118 HRVLDAGGAPVFLPPNATDLRVAADGTISAEGRLIGQIGLVRPLDPNDLIREGGTLFRTD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + P+E G + +GFLE SN + + ++ +M+ + + + + ++ + E ++ Sbjct: 178 VGTKPVE---GSRILQGFLEGSNVDPIAQVARMVEVQRAYEMGQSFLENENTRIRETLKT 234 Query: 241 I 241 + Sbjct: 235 M 235 >gi|51246533|ref|YP_066417.1| flagellar hook basal body protein (FlgG) [Desulfotalea psychrophila LSv54] gi|50877570|emb|CAG37410.1| probable flagellar hook basal body protein (FlgG) [Desulfotalea psychrophila LSv54] Length = 261 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 110/268 (41%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G A + + +A+N++N +T GF+ F +++ + S Sbjct: 1 MFRSLWTGTTGMQAQQLNIDIIANNLANVNTTGFKKSSADFQDLLYQTMKVPGSQTSPDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G I T ELD A++G +F +E+P G I TR G F Sbjct: 61 ESPTGILVGLGVKPAAVTKVFTQGDLIQTENELDVAIQGRGFFQIEAPDGNIKYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 K +G + S+ G YP++ I IP + ++GE G +S K I T+ L Sbjct: 121 KRDSNGRMTSSDG-YPLIPE----ITIPSGAKQVSIGETGIVSVKLDSDSTETEIGTIEL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E P E+ G +++ +LE SN N + EM MI Sbjct: 176 AGFTNPAGLAAIGKNLFEETGASGTATIGIPGEEGYGTLIQQ-YLEGSNVNLVAEMAAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + ++++ +++ M + + ++A Sbjct: 235 STQRAYEINSSMVKTSDQMM-QTVNDLA 261 >gi|332284021|ref|YP_004415932.1| flagellar basal body rod protein FlgG [Pusillimonas sp. T7-7] gi|330427974|gb|AEC19308.1| flagellar basal body rod protein FlgG [Pusillimonas sp. T7-7] Length = 261 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 105/266 (39%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S I + + + +++N++N +T GF+ + F +++ ++ Sbjct: 1 MIRSLWIAKTGLESQQTNMDVISNNLANVNTTGFKRSRANFEDLMYQTIRQPGAQVGAAN 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG +D A++G + +E P G TRDG Sbjct: 61 QLPSGLQIGTGVRTVATERIHTQGNLKDTGNSMDIAIQGKGFLQVEMPDGTFAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------GKVIATMG 159 +V +G LV+A G YP+ PI IP + G +S + + Sbjct: 121 QVDQNGQLVTA-GGYPI----QPPINIPDNALTITIARDGMVSVTQPGATGANVEVGQLQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L + G + E P P D +G+ +++ + E SN N E+ M Sbjct: 176 LNTFINPTGLQSAGENLYVETDASGPANFAQPGLDGAGLVLQQ-YTETSNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + I+ +++ + + Sbjct: 235 ITTQRAYEMNSKAIETSDQMLARLTQ 260 >gi|32266580|ref|NP_860612.1| flagellar basal body rod protein FlgG [Helicobacter hepaticus ATCC 51449] gi|32262631|gb|AAP77678.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] Length = 262 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 109/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L + ++ ++N++N +T G++ + +F+++ + S Sbjct: 1 MMRSLYTASTGMLGQQLQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G T LD A+ G+ +F +E P G I TR G F Sbjct: 61 ISPTGIEVGIGVRPVAIQKMFSQGHPKETENNLDIAITGNGFFQIELPDGNIAYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ +DG++V+A G + + IP+ N+G G +S + ++ + + Sbjct: 121 KLDNDGNVVNAEGYRLI-----PELTIPEGATQINIGTDGTVSVIEGNQTEVNILGQIEI 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G ++ + N P+ + G+ +++GFLE SN + EM +I Sbjct: 176 VNFINPAGLHSLGDNLFINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ + + Sbjct: 236 GQRAYEANSKTIQTAD-SMLQTVNGL 260 >gi|149203126|ref|ZP_01880097.1| hypothetical protein RTM1035_20326 [Roseovarius sp. TM1035] gi|149143672|gb|EDM31708.1| hypothetical protein RTM1035_20326 [Roseovarius sp. TM1035] Length = 237 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+++ L Q L + L VA+N++N T G+R + FSE V + + +S Sbjct: 1 MESAGYTTLTRQSGLLRELQVVANNIANAATTGYRQEGLIFSEFV--KRTEGGPSLSMAR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S G TG LD A+EGD +F +E+P G LTR G F ++ G LV+ G Sbjct: 59 GNVRMTSTLQGPLTPTGGMLDLAIEGDGFFLIETPAGERLTRAGSFTLSAQGDLVTPDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD P+ IP + G +S G+ +A +GL G +R + + Sbjct: 118 FRVLDAGGAPVFIPPDASSIGLSPDGTLSDNGRPLAQIGLVRPIDRVGMIREDGVMFHAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+E+ + +GFLE +N + + ++ +MI + + + + +D + + A+ + Sbjct: 178 GGFEPVEEG---VIHQGFLEGANVDPIGQVARMIEVQRAYEMGQSFLDTEHERVTSALDS 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|160901817|ref|YP_001567398.1| flagellar basal-body rod protein FlgG [Petrotoga mobilis SJ95] gi|160359461|gb|ABX31075.1| flagellar basal-body rod protein FlgG [Petrotoga mobilis SJ95] Length = 261 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S A +++L +++N++N DT G++ + +F +++ + + + Sbjct: 1 MLVSLYNAATGMNAEQRKLDIISNNLANVDTTGYKKQRAEFQDLLYSSVKEAGTPTAQGS 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 +V G + +G+ T D A+ GD +F ++ G I TRDG F Sbjct: 61 TLPTGLYVGHGTRLAATTRIFTLGNIEPTDNSTDIAIMGDGFFQVQMQDGSIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLY 161 K+ +G L ++ G + I IPQ NV G +S + + + Sbjct: 121 KLDANGRLTTSDGLMVI-----PNIVIPQNSVGINVSPDGIVSVSLGDGTIQNVGNLTTV 175 Query: 162 SVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G N+ S P +D G +++G+LE SN + + EM MI Sbjct: 176 RFLNPGGLKPIGNNLYSETPASGNPTEGIPGQDGFGA-LQQGYLEKSNVDVVKEMVDMIV 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + ++ + I ++ ML + N+ Sbjct: 235 AQRAYDINSKTITTADE-MLRTVSNV 259 >gi|268317781|ref|YP_003291500.1| flagellar basal-body rod protein FlgG [Rhodothermus marinus DSM 4252] gi|262335315|gb|ACY49112.1| flagellar basal-body rod protein FlgG [Rhodothermus marinus DSM 4252] Length = 262 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M + A + + +A N++N +T GF+ +V F +++ Q+ Sbjct: 1 MLRALRTAALGMNAQQTNVDNIAHNLANANTTGFKNARVVFQDLLYQTVQTPGQEEAEGL 60 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S VA GS + TG LD A+ GD +F + P G + TRDG F Sbjct: 61 TPPASLQLGSGVAVVATVRQFTQGSLVETGNALDLAINGDGFFQIRRPDGTIVYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 + DG+ V+ +G + +P ++ + G +S + + I + L Sbjct: 121 TLNADGTFVTQTGL-----PLEPELSVPPDTIEIHISQDGVVSVRLQGETESVEIGRLEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + P E+ G TVK+GFLE +N + + EM +I Sbjct: 176 ARFPNPAGLRAIGGNLYEQTEASGFPILGAPGEEGFG-TVKQGFLEAANVDVVQEMVNLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + ++ E+ + A Sbjct: 235 TAQRAYEINSKMVTTTEEMLQTA 257 >gi|218887604|ref|YP_002436925.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758558|gb|ACL09457.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 260 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 106/263 (40%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------N 50 M S +A + + +++N++N +T F+ + +F +++ N Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISNNLANVNTTSFKKSRAEFEDLMYQNMRIAGAATEGDN 60 Query: 51 DIDQKISFVASGKEYL---SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I I + G + +TG LD A+EGD +F ++ TR G FK Sbjct: 61 RIPTGIQVGMGVRPTTVHKFFTQGDYSNTGNSLDLAIEGDGFFLVQVNGEDAYTRAGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIAT--MGLYS 162 + DG +V+A+G +P + + V E G IS G +A + LY+ Sbjct: 121 LNQDGVVVTANGY-----TLQPEFTVPAETKNITVTENGHISALDSNGAALAEADIPLYT 175 Query: 163 VDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G R + P + P E+ G T+ +GFLE SN + EM MI Sbjct: 176 FINPAGLEARGRNLYVPSEASGEAVEGVPGENQVG-TIAQGFLEMSNVEVVDEMVNMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + A++ Sbjct: 235 QRAYEMNSKAIQTSDTMLQTAVQ 257 >gi|91776311|ref|YP_546067.1| flagellar basal-body rod FlgG [Methylobacillus flagellatus KT] gi|91710298|gb|ABE50226.1| Flagellar basal-body rod FlgG [Methylobacillus flagellatus KT] Length = 261 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 105/268 (39%), Gaps = 34/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +A+N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWIAKTGLDAQQMQMDVIANNLANVSTNGFKKTRAVFEDLLYQNIRQPGAQSSQQT 60 Query: 54 QKISFVASGKEYLSKE------VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ TG D A+ G+ +F + P G TRDG F Sbjct: 61 QLPSGLQLGTGVRPVATERIHIQGNLQQTGNNKDVAISGEGFFQVLLPDGSTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-------KGKVIATMG 159 ++ + G LV+ASG I +P VG G +S I T Sbjct: 121 QLDNQGQLVTASGF-----TVQPAIIVPPNALSLTVGRDGTVSVVLPDNPNNAVQIGTFQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L + G + E + P P + +G+ V + +LE SN N E+ M Sbjct: 176 LATFINPAGLQSRGENLYIETAASGPANINQPGLNGTGLLVHQ-YLETSNVNVAEELVSM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + I +++ ML+ + + Sbjct: 235 IQTQRAYEINSKAISTSDQ-MLQRLSQL 261 >gi|320536024|ref|ZP_08036083.1| putative flagellar basal-body rod protein FlgF [Treponema phagedenis F0421] gi|320147123|gb|EFW38680.1| putative flagellar basal-body rod protein FlgF [Treponema phagedenis F0421] Length = 271 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 112/272 (41%), Gaps = 36/272 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND------ 51 M + + A +Q+L +++N++N DT ++ F E++ ND Sbjct: 1 MIRGWYTAASGMNAQQQQLDVISNNLANVDTTSYKRDVTINKNFPELLLRRTNDDGVIKN 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 I + V + + E GS T + D ALEG +FA+++P+ T Sbjct: 61 PFGSSDAAPIIGKLGLGVEVNEVFTEFEQGSLKQTHSPSDIALEGKGFFAVQTPQREEYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGK 153 R+G F V +G L++ G YPVL +I +D + + + GEI Sbjct: 121 RNGNFLVGVEGYLMTKEG-YPVLGENG---RIFLQDMEYKINQNGEIYARPITEPDTDAV 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYE 209 + + + + + + ++ +S P G VTV +GF+E SN N + E Sbjct: 177 FLDRLKIVTFENDRYLQKKGSSFYLDTPVSGPAIAAEGPDRPVTV-QGFIEASNVNVVNE 235 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M +MI + + + + I + M + + Sbjct: 236 MVRMIEVNRAYEANQKTIQSEDTMMAKLWNEV 267 >gi|284007173|emb|CBA72457.1| flagellar basal-body rod protein FlgG [Arsenophonus nasoniae] Length = 260 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 104/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGSLTSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ + G+ T D A++G +F ++ P G TRDG F Sbjct: 61 LSPSGLQLGTGVRPIATQRLHSQGNLSQTNGSTDVAIKGQGFFHIQLPDGTDAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V + V+A G V PI +P+ + G +S + + + + L Sbjct: 121 QVDQNNQRVTAGGFAVV-----PPIVLPETALKVTISHDGIVSVVIPGNSEPQQVGQLAL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + N P+E GV + +G++E SN N E+ MI Sbjct: 176 TTFVNETGLESIGENLYLETNSSGVPVETAPGVNGAGLLYQGYVETSNVNVAEELVSMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + ++ Sbjct: 236 TQRAYEINSKAVSTSDQMLQRLMQ 259 >gi|167645397|ref|YP_001683060.1| flagellar basal body rod protein [Caulobacter sp. K31] gi|167347827|gb|ABZ70562.1| flagellar basal body rod protein [Caulobacter sp. K31] Length = 245 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 4/244 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISF 58 M + +GL+ Q+ L + L VA+N++N +T GF+ ++ + + F Sbjct: 1 MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEQLMVRTEPAKPARTVGGSYPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V G+ TG D A+EG +F + + G TRDGRF ++ +G L++ + Sbjct: 61 VLDDGVARDFSQGALTQTGGAFDLAIEGQGFFKVSTAGGERYTRDGRFTMSPEGKLITQN 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G VLD I + + G +SQ + + +G+ F + ++ Sbjct: 121 GA-SVLDEGGGEIIVDPLKGPATIARDGTVSQGAERLGKIGVVRPTDLAAFRKDGDNLYR 179 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 TP + + + +G LE SN S+ ++ ++I + + + S+ ++D+ + A+ Sbjct: 180 NTTNDTP-QPATNAAIHQGMLEASNVESIKQITKLIEVNRAYESVAKMMDQTTELSRSAV 238 Query: 239 RNIA 242 + Sbjct: 239 ERMG 242 >gi|295097201|emb|CBK86291.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 260 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 113/267 (42%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N +T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVNTNGFKRQRAVFQDLLYQTMRQPGAQASEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S + G TG + D A+EG +F ++ P G TRDG F Sbjct: 61 TLPSGLQLGTGVRPVSTQRVHTQGGLNMTGNDTDVAIEGKGFFQVQLPDGSTAYTRDGHF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++G LV+A G +P+L + +PQ + + G +S + + + + L Sbjct: 121 DKNENGQLVNAEG-HPILPG----VVVPQDAKEMQISPDGIVSVTLPGQAQPQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE P + +G T+K+ ++E SN N E+ MI Sbjct: 176 ATFVNDAGLESIGGNLYRETQSSGAPNELNPGLEDAG-TLKQKYIETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + + +++ ML+ + + Sbjct: 235 QVQRAYEINSKAVSASDQ-MLQRLTQL 260 >gi|238919261|ref|YP_002932776.1| flagellar basal body rod protein FlgG [Edwardsiella ictaluri 93-146] gi|238868830|gb|ACR68541.1| flagellar basal-body rod protein FlgG, putative [Edwardsiella ictaluri 93-146] Length = 260 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLYIAKTGLEAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 NLPSGLQLGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVTLPDGSQAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+ASG + I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTASGF-----QITPAITIPANATSMTIGRDGIVSVTLQGQAAPQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E + TP + +G+ + +G++E SN N E+ MI Sbjct: 176 NTFINDAGLESMGENLYQETASSGSPTESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 235 QTQRAYEINSKAISTSDQMLQRLTQ 259 >gi|238755322|ref|ZP_04616665.1| Flagellar basal-body rod protein flgG [Yersinia ruckeri ATCC 29473] gi|238706458|gb|EEP98832.1| Flagellar basal-body rod protein flgG [Yersinia ruckeri ATCC 29473] Length = 260 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSKTDNSKDIAIKGQGFFQVQLPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G LV+ASG I IP VG G +S + + + L Sbjct: 121 QMDQNGQLVTASGFQV-----QPAITIPANALSITVGRDGIVSVTQQGQTAAQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E + TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFINDSGLESVGENLYQETASSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQKLTQ 259 >gi|319787119|ref|YP_004146594.1| flagellar basal-body rod protein FlgG [Pseudoxanthomonas suwonensis 11-1] gi|317465631|gb|ADV27363.1| flagellar basal-body rod protein FlgG [Pseudoxanthomonas suwonensis 11-1] Length = 261 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 103/266 (38%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + R+S VA+N++NT+T GF+ + F +++ S Sbjct: 1 MNQALWVAKTGLDAQQTRMSVVANNLANTNTTGFKRDRANFEDLLYQQVRQPGGSTSAQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G+ TG LD + G +F + P G TRDG F Sbjct: 61 QLPSGLQLGTGVRVVSTAKDFQQGNPQQTGRALDVMINGRGFFEVLMPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGK--VIATMGL 160 +V G LV++SG YPV IQ+P+ + +G G I+ G+ I + L Sbjct: 121 QVNAQGELVTSSG-YPVQPG----IQVPEGAQSMTIGTDGTITVQMAGDGQALEIGALTL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 G R + P ++ + V++G LE SN N + E+ MI Sbjct: 176 TDFINPAGLQARGENLYMETTASGPAQNGTPGLNGLGLVEQGALEGSNVNVVEELVSMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + N+ Sbjct: 236 TQRAYEMNAKAISTTDSMLGYLNNNV 261 >gi|46578928|ref|YP_009736.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris str. Hildenborough] gi|120603471|ref|YP_967871.1| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris DP4] gi|46448340|gb|AAS94995.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris str. Hildenborough] gi|120563700|gb|ABM29444.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris DP4] gi|311232786|gb|ADP85640.1| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris RCH1] Length = 260 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S +A + + ++ N++N +T GF+ + +F +++ Sbjct: 1 MMRSLWTAATGMVAQQLNIDVISHNLANVNTSGFKKSRAEFEDLMYQNMRIAGSATEGDS 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V G + G F ++G LD A+EGD +F + TR G FK Sbjct: 61 RIPVGIQVGMGVRPTAVHKFFSQGDFQNSGNPLDIAIEGDGFFQVLVNGEPRYTRAGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGLYS 162 + DG++V+A+G VL +P + + V E G I+ G+ +A + LY+ Sbjct: 121 LNQDGTVVTANGY--VL---QPEFTVPAETKNVVVTEAGHIAALDANGQELAAADIPLYT 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + + P ED G T+ +GFLE SN + EM MI Sbjct: 176 FINPAGLDAIGRNLYVPSEASGEAVEGVPGEDNVG-TLAQGFLEMSNVEVVDEMVNMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + A+ Sbjct: 235 QRAYEMNSKAISTSDQMLQTAVN 257 >gi|332704824|ref|ZP_08424912.1| flagellar basal-body rod protein FlgF [Desulfovibrio africanus str. Walvis Bay] gi|332554973|gb|EGJ52017.1| flagellar basal-body rod protein FlgF [Desulfovibrio africanus str. Walvis Bay] Length = 277 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 116/278 (41%), Gaps = 40/278 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 MQ + + L+ E R++ +++N++N T G++T V F +V +D Sbjct: 1 MQEAIYSAVFGALSSEHRMNIISNNLANVSTTGYKTDSVTFKDVFVPFAHDYILDSKEHL 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 I+ + GS TG LD A++GD +F + +P G+ TR+G Sbjct: 61 RAKPLWPDADVIAKPRLAEHKTDFAQGSLRKTGDPLDLAIQGDGFFKILTPDGVRYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F +G +V ++G P+L PI + + + G +S+ G + T+ L D Sbjct: 121 HFNAMPNGQIVDSNGN-PLLGTDG-PIFL-SGSGVVEIDPAGNVSEGGAQVGTIALVRFD 177 Query: 165 MSQGFVRRENSGI--------------------SPNIPPTPLEDLSGVTVKRGFLEDSNA 204 +G ++ + + TP +S V +++GFLE SN Sbjct: 178 NPRGVIKDGQNLYKLSEDFEANEMAVSPGMPEITTGSDGTPQTRISPV-IQQGFLESSNV 236 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM +MI + + F + ++ + I+++ Sbjct: 237 EIVTEMVRMIEVNRVFEAYQKIMRGTQDMDSSLIKSMG 274 >gi|224437199|ref|ZP_03658180.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313143665|ref|ZP_07805858.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313128696|gb|EFR46313.1| flagellar basal body rod protein FlgG [Helicobacter cinaedi CCUG 18818] Length = 262 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 109/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L + ++ ++N++N +T G++ + +F+++ + S Sbjct: 1 MMRSLYTATTGMLGQQMQIDNTSNNIANVNTTGYKKQRAEFADLFYQVLQYAGTSTSETT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G T LD A+ G+ +F +E P G I TR G F Sbjct: 61 ISPTGIEVGIGVRPVAVQKMFSQGHPKETENNLDVAITGNGFFQIELPDGNIAYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ ++G++V+A G + + IP+ N+G G +S + V+ + + Sbjct: 121 KLDNNGNVVNAEGYRLI-----PELTIPEGATQINIGTDGTVSVIEGNQTEVNVLGQIEI 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G ++ + N P+ + G+ +++GFLE SN + EM +I Sbjct: 176 VNFINPAGLHSLGDNLFINTNASGDPVAGVPGLDGFGQLRQGFLELSNVKLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ + + Sbjct: 236 GQRAYEANSKSIQTAD-SMLQTVNGL 260 >gi|126734106|ref|ZP_01749853.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. CCS2] gi|126716972|gb|EBA13836.1| flagellar basal-body rod protein FlgF, putative [Roseobacter sp. CCS2] Length = 238 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 5/243 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + T+A+N++N T GFR + F+E V I D +S Sbjct: 1 MDNASYTALTRQSGLLNEMQTLANNIANASTTGFRAEGIIFAEHVKTIGPDAPS-LSMAT 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G+ TG D A+EGD +F +E+P G LTR G F ++G LV+A G Sbjct: 60 ANVRNTVMTQGALAQTGGTFDLAIEGDGFFLVETPGGPRLTRAGAFGPNENGDLVTADG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ +PQ +G G IS G+ I +GL VR + Sbjct: 119 YAVLDAGGAPVFVPQGLGPVGIGPDGTISAGGQPIGQVGLVIPTDPLQMVREGSVMFDAR 178 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 E + +GFLE SN N + ++G+MI + + + + +D+ ++ + I+ Sbjct: 179 ---GGFEAAPDGRMLQGFLEGSNVNPILQIGRMIEVQRAYELGQSFLDKEDERIRSVIQA 235 Query: 241 IAS 243 I + Sbjct: 236 IRT 238 >gi|238796906|ref|ZP_04640410.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] gi|238719166|gb|EEQ10978.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] Length = 260 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 107/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F ++ G +RDG F Sbjct: 61 TIPTGLQLGTGVRPVATERIHSQGNLTQTNNSKDLAIQGHGFFQVQMADGTTAYSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G LV++SG YPV I IPQ + VG G +S + + + + Sbjct: 121 QFDQNGQLVTSSG-YPVQPA----ITIPQDADTLTVGNDGIVSVTVPGQTAPQQVGQLTV 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE TP + G T+K+G++E SN N E+ MI Sbjct: 176 STFINDSGLESIGENLYRETQSSGAPNETTPGLNGGG-TLKQGYIETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQRLTQ 259 >gi|260431749|ref|ZP_05785720.1| flagellar basal-body rod protein FlgF [Silicibacter lacuscaerulensis ITI-1157] gi|260415577|gb|EEX08836.1| flagellar basal-body rod protein FlgF [Silicibacter lacuscaerulensis ITI-1157] Length = 236 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 7/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T+ + L+ Q L + VA+N++N +T G+R + FSE V + +S Sbjct: 1 MDTA-YVTLSRQSGLMNEMRLVANNIANANTTGYRQQGLVFSEFVRDLPG--APSLSMSR 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S E G TG + DFA+EGD +F +E+P G LTR G F +G LV+ G Sbjct: 58 GQVRNTSFEQGLLTQTGGQFDFAIEGDGFFLIETPSGNRLTRAGSFAPDANGDLVTPDG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ IP +VG G +S G+++ +G+Y VR ++ P+ Sbjct: 117 YRVLDSNGAPVFIPPDAATIDVGGDGTLSVDGQLLGQIGVYRPTDGTNLVREASTLFRPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+E V FLE SN N++ ++ ++I + + + + ++ ++ + A++ Sbjct: 177 GEVEPVEQP---VVLHRFLEGSNVNAIDQVTKLIEIQRAYELGQSFLEAEDERIRGALKT 233 Query: 241 I 241 + Sbjct: 234 L 234 >gi|21242725|ref|NP_642307.1| flagellar basal body rod protein FlgG [Xanthomonas axonopodis pv. citri str. 306] gi|78047584|ref|YP_363759.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624042|ref|ZP_06702805.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665577|ref|ZP_06730858.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325927973|ref|ZP_08189194.1| flagellar basal-body rod protein FlgG [Xanthomonas perforans 91-118] gi|21108201|gb|AAM36843.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas axonopodis pv. citri str. 306] gi|78036014|emb|CAJ23705.1| flagella basal body rod protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601661|gb|EFF45635.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604675|gb|EFF48045.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541658|gb|EGD13179.1| flagellar basal-body rod protein FlgG [Xanthomonas perforans 91-118] Length = 261 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + R+S +++N++NT+T GF+ + F +++ S Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + GS TG LD + G +F ++ P G TRDG F Sbjct: 61 QLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ G LV+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 121 QINAQGELVTNSG-YPLQPG----IQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P TP + G TV +G LE SN N++ E+ MI Sbjct: 176 TDFINPSGLQAKGENLFVETTASGPAQNGTPGLNGLGTTV-QGALEGSNVNTVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + N+ Sbjct: 235 ETQRAYEMNAKAISTTDSMLGYLNNNV 261 >gi|125975104|ref|YP_001039014.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|256003242|ref|ZP_05428234.1| flagellar basal-body rod protein FlgG [Clostridium thermocellum DSM 2360] gi|281418478|ref|ZP_06249497.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|125715329|gb|ABN53821.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|255992933|gb|EEU03023.1| flagellar basal-body rod protein FlgG [Clostridium thermocellum DSM 2360] gi|281407562|gb|EFB37821.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316939269|gb|ADU73303.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 266 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 118/265 (44%), Gaps = 25/265 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M + + A + + +A+N+SN +T ++ +++F +++ N D + + Sbjct: 1 MMRALWTAGSGMTAQQLNVDVIANNLSNVNTTAYKKERLEFKDMLYDTLNRAYILDGEGR 60 Query: 56 ISFVASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 + G + + G+F T LD A++GD +F + PRG I+ TRDG FK+ Sbjct: 61 PVNLQVGYGTVPMATLKNFQSGNFEKTDNPLDLAIDGDGFFMVLGPRGDIVYTRDGSFKI 120 Query: 109 T--DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIA---TMGL 160 + ++G++++ S YPVLD + V I + NV GE+S + G V+ +GL Sbjct: 121 SVTENGNMLTTSDGYPVLDESGVEIILDIDISKLNVSSDGELSYTDENGVVVPLGQRIGL 180 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G ++ + E +++ +LE SN + EM ++I Sbjct: 181 VKFPNRNGLESIGSNFYASTSASGEAVPDEELGKKSNIRQYYLESSNVQVVEEMVKLIVA 240 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML N+ Sbjct: 241 QRAYEINSKAIQSADE-MLGIANNL 264 >gi|238785495|ref|ZP_04629478.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] gi|238713597|gb|EEQ05626.1| Flagellar basal-body rod protein flgG [Yersinia bercovieri ATCC 43970] Length = 260 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLAKTDNTKDIAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+ASG +PV I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTASG-FPVQPA----ITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 TTFINNSGLESMGENLYQETASSGAPNDTTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|183220919|ref|YP_001838915.1| flagellar basal body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911015|ref|YP_001962570.1| flagellar basal body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775691|gb|ABZ93992.1| Endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779341|gb|ABZ97639.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 265 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 35/267 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKIS 57 M S G +A + + TVA+N++N +T GF+ +V F ++V + +S Sbjct: 1 MMRSLWTGATGMIAQQFHIDTVANNLANVNTTGFKKNRVDFEDLVYQHQVLAGTPATSVS 60 Query: 58 FVASGKEYLS----------KEVGSFISTGTELDFALEGD-AWFALESPRGII-LTRDGR 105 + +G E+GSF +TG +LD AL G+ A+F ++ P G +RDG Sbjct: 61 EIPTGVNVGHGVKVAATQKLFEIGSFQATGNKLDLALTGEMAFFKIQMPDGTFSYSRDGS 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKD--EIFNVGEKGEISQ------KGKVIAT 157 FK+ + +V+++G PI +P+ V E+GE++ + I Sbjct: 121 FKIDSNQQVVTSNGYLL-----EPPIILPENAILNTLMVSEEGEVTVKIGNDIRPTTIGQ 175 Query: 158 MGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 + LY G + RE IP P ++ G +V +GFLE SN + EM Sbjct: 176 LELYRFVNPAGLQAVGKNLFRETVASGQEIPGMPSQEGYG-SVLQGFLEMSNVKIVEEMV 234 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S + I ++ + AI Sbjct: 235 NMIVAQRAYESNSKTIQTSDNMLSTAI 261 >gi|78358198|ref|YP_389647.1| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220603|gb|ABB39952.1| Flagellar basal body rod protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 261 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S +A + + T+++N++N +T+GF+ + +F +++ G++ + Sbjct: 1 MMRSLWTAATGMIAQQLNIDTISNNLANVNTLGFKKSRAEFEDLMYQNMKIAGSVTGNDQ 60 Query: 54 QKISFVASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + + G + G + +TG LD A+EGD +F + TR G FK Sbjct: 61 RIPTGIQVGLGVRPTTVHKFFTQGDYSNTGNPLDLAIEGDGFFQVTVNGEPAYTRAGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIAT--MGLYS 162 + DG++V+A+G YP+ +P + + V E G I+ G+ +A + LY+ Sbjct: 121 LNQDGTVVTANG-YPLEPEF----TVPPETKNVVVTENGHIAALDKNGEELAAADIPLYT 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + + P ED G T+ +GFLE SN + EM MI Sbjct: 176 FINPAGLQAAGRNLYLASEASGVAVEGVPGEDNVG-TIAQGFLEMSNVEVVDEMVNMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + A + Sbjct: 235 QRAYEMNSKAIQASDNMLQTATQ 257 >gi|238764394|ref|ZP_04625344.1| Flagellar basal-body rod protein flgG [Yersinia kristensenii ATCC 33638] gi|238697420|gb|EEP90187.1| Flagellar basal-body rod protein flgG [Yersinia kristensenii ATCC 33638] Length = 260 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 107/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+ASG I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTASGFQV-----QPAITIPANALKMTIGRDGIVSVTLQGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 TTFINNSGLESVGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|90021853|ref|YP_527680.1| flagellar basal body rod protein FlgG [Saccharophagus degradans 2-40] gi|89951453|gb|ABD81468.1| Flagellar basal-body rod FlgG [Saccharophagus degradans 2-40] Length = 261 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + RL+T+A+N++N TVGF+ + F +++ I+ Sbjct: 1 MHAALYVSKTGLAAQDTRLTTIANNLANASTVGFKRDRAVFEDLLYQIQRQPGAQTTEET 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V GS TG LD A++G + + P G + TRDG+F Sbjct: 61 QLPSGLQLGTGVRVVGTQKQFTPGSLQVTGQSLDVAIDGRGFIPVLQPDGTVSYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G +V+ASG I IP E +G G +S V+ + + Sbjct: 121 HLDGQGQVVNASGLL-----IQPAITIPDNAETVTIGTDGVVSASVRGEPAPVVLGNLQI 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + I TP E+ G ++K+G LE+SN + + EM MI Sbjct: 176 VDFVNPAGLQAIGGNLFLETASSGNPIQGTPGENGLG-SIKQGMLENSNVDIVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ +++ + +NI Sbjct: 235 TTQRAYEMNSKVVSTSDQMLQFITQNI 261 >gi|171059410|ref|YP_001791759.1| flagellar basal-body rod protein FlgG [Leptothrix cholodnii SP-6] gi|170776855|gb|ACB34994.1| flagellar basal-body rod protein FlgG [Leptothrix cholodnii SP-6] Length = 260 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 30/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +L V++N++N T G++ F +++ S Sbjct: 1 MMRALWISKTGMEAQQTQLDVVSNNLANVATNGYKKSHAVFEDLMYQTLRQSGAASSEQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + G+ +G LD A++G+ +F ++ P G TRDG F Sbjct: 61 QLPTGLQVGLGVRTVATSRQFTQGNLQQSGNTLDVAIKGNGFFPIQMPDGTTGYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V+ G LV+++G Y V I IP + + G +S +V+ + + Sbjct: 121 QVSATGQLVTSAG-YAVQPG----ITIPADAQTVTIAPDGVVSVALPGQTAPQVLGQLQV 175 Query: 161 YSVDMSQGFVRRENSGISPNI-PPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G + + + TP G ++ +GFLE SN N + E+ MI Sbjct: 176 ANFINPAGLEAKGGNLYTETASSGTPNGGAPGSNGLGSLSQGFLETSNVNVVEELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 236 TQRAYELNSKAISTSDQMLQKL 257 >gi|329888225|ref|ZP_08266823.1| flagellar basal-body rod protein FlgF [Brevundimonas diminuta ATCC 11568] gi|328846781|gb|EGF96343.1| flagellar basal-body rod protein FlgF [Brevundimonas diminuta ATCC 11568] Length = 245 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 6/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 M+ + IGL+ Q+ L + L VA+N++N DT GF+ ++ VG A ++I SF Sbjct: 1 MENAAYIGLSRQMTLRRELDIVANNVANADTTGFKVEQLMVGTEVGQRARNDNIRPSASF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTRDGRFKVTDDGSLVSA 117 V G+ TG ELDF +EG+ +F +++P G TRDG F +G L + Sbjct: 61 VLDKGVGRDFGQGTLKQTGRELDFGIEGEGAFFTVQTPSGPAYTRDGAFVTDPEGRLTTK 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G PVL I + + +VG G ISQ+G+ + + + D + +++ G+ Sbjct: 121 QG-LPVL-ADGAEIVLDPQRGPASVGADGTISQEGQPVGRLTVVRFD-ALSVLQKSGDGL 177 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 N D + V++G LE SN N++ E+ +I +++ + +T +I+ + Sbjct: 178 YRNASNAQPMDATDAQVRQGMLEGSNVNTLVEITNLIEISRAYERVTKMIENANDLSRRS 237 Query: 238 IRNIA 242 + + Sbjct: 238 VERLG 242 >gi|30248324|ref|NP_840394.1| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718] gi|30138210|emb|CAD84218.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 260 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + ++ +A+N++N T GF+ ++ F +++ + S Sbjct: 1 MVRSLWISKTGLDAQQTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIRQPGAQSSERT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG D A++G+ +F + P G TRDG F Sbjct: 61 RLPSGLQLGTGVRPVATENIFLQGNLQQTGNTRDVAIQGEGFFQILLPDGTLAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + DG +V+ASG +P+ I IP +G G + S + + L Sbjct: 121 QSDQDGQMVTASG-FPLQPS----ITIPPNTLNITIGRDGTVSVLTPGSALPVPVGNIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNI------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G R + + P P + G+ + +GF+E SN N + E+ +MI Sbjct: 176 TTFINPAGLQRFGENLYLETMSSGVPNPGIPGTNGIGL-LNQGFVETSNVNVVEELVEMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 235 QTQRAYEINSRSISTSDQMLARLTQ 259 >gi|77463650|ref|YP_353154.1| flagellar distal rod protein [Rhodobacter sphaeroides 2.4.1] gi|126462482|ref|YP_001043596.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] gi|221639493|ref|YP_002525755.1| Flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides KD131] gi|332558506|ref|ZP_08412828.1| FlgG [Rhodobacter sphaeroides WS8N] gi|11095160|gb|AAG29749.1|AF205139_1 flagellar distal rod protein [Rhodobacter sphaeroides] gi|77388068|gb|ABA79253.1| Flagellar distal rod protein [Rhodobacter sphaeroides 2.4.1] gi|126104146|gb|ABN76824.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] gi|221160274|gb|ACM01254.1| Flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides KD131] gi|332276218|gb|EGJ21533.1| FlgG [Rhodobacter sphaeroides WS8N] Length = 262 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID--------- 53 + ++ A + R+ +++N++N +T GF+ + F ++ Sbjct: 4 NAMHVASTGLNAQQTRMQVISNNLANVNTTGFKRDRANFESLLYQTWKPGGAQTSEATAM 63 Query: 54 QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 S V +G +S E GS +T LD A++G +F + P G + TR+G F Sbjct: 64 TSPSAVGTGVRVVSTEKLYTQGSLANTDNALDLAIDGPGFFQVLMPDGRMGYTRNGTFSQ 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYS 162 +G++ + SG Y V IQIP+ + G +S + + + M L + Sbjct: 124 NAEGTITTPSG-YVVQPE----IQIPEGAVSVTISSDGIVSVLMPDETEAQEVGQMTLAT 178 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G E + P+E G + +G LE SN N + E+ MI Sbjct: 179 FANPRGLQPVGETFAVETGASGEAVIGNPVEPGFG-KLVQGSLEASNVNVVQELVDMIET 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ M + Sbjct: 238 QRAYEVNSKSISASDEMMQYLSNKL 262 >gi|255322391|ref|ZP_05363537.1| flagellar basal-body rod protein FlgG [Campylobacter showae RM3277] gi|255300764|gb|EET80035.1| flagellar basal-body rod protein FlgG [Campylobacter showae RM3277] Length = 262 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 108/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +A + ++ + N++N +T+G++ + +F++++ + S Sbjct: 1 MMRSIYSAATGMIAQQTQIDVTSHNIANVNTIGYKKNRAEFADLMYQVMEYAGTATSATT 60 Query: 61 SGKEYL-------------SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G F T LD + G+ +F ++ P G TR+G F Sbjct: 61 KSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ +G++V++ G VL + IP +VG G +S + + + L Sbjct: 121 KLDSEGTIVNSDGY--VL---QPQMTIPADATQVSVGTDGTVSVLQPGNTEMTQVGRIEL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ P + T D G T+++GF+E SN + EM +I Sbjct: 176 ANFINPAGLHSMGDNLYLPTGSSGEVVVGTAGLDGLG-TIRQGFVEMSNVQLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML + ++ Sbjct: 235 TGQRAYEANSKAITTSDD-MLSIVNSL 260 >gi|297538898|ref|YP_003674667.1| flagellar basal-body rod protein FlgG [Methylotenera sp. 301] gi|297258245|gb|ADI30090.1| flagellar basal-body rod protein FlgG [Methylotenera sp. 301] Length = 260 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +A+N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLDAQQTQMDVIANNLANVSTNGFKRSRAVFEDLLYQNIRQPGAQTSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ T D A++G +F + P G TRDG F Sbjct: 61 QLPSGLQLGTGVRPVATERIFSQGNLQQTSNNKDVAIQGAGFFQVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + G LV++SG +PV I +P E F VG G +S I T+ L Sbjct: 121 QTDSQGQLVTSSG-FPVQPA----ITVPANAESFTVGRDGTVSITTTGSTATTQIGTLQL 175 Query: 161 YSVDMSQGFV-RRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + + G + EN + P + G + +G++E SN N + E+ MI Sbjct: 176 ATFINTAGLQGKGENLFVETTASGNPTVNNPGTNGAGLLTQGYVETSNVNVVEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEINSKAITTSDQMLQKLTQ 259 >gi|39998142|ref|NP_954093.1| flagellar basal body rod protein FlgG [Geobacter sulfurreducens PCA] gi|39985088|gb|AAR36443.1| flagellar basal-body rod protein FlgG [Geobacter sulfurreducens PCA] gi|298507079|gb|ADI85802.1| flagellar basal body rod protein FlgG [Geobacter sulfurreducens KN400] Length = 262 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + + A + + VA+N++N +T GF+ + F +++ GA Sbjct: 1 MIRALWTAASGMQAQQTNIDVVANNLANVNTAGFKKSRADFQDLMYQNLKTSGAPSTSST 60 Query: 54 QKISFVASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ TG ELD A+EGD +F ++ P G +R G F Sbjct: 61 QVPSGIQIGLGAKLAAVTKLFSEGNINQTGNELDIAIEGDGFFQIQMPDGTTTYSRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGL 160 K D G +V++ G YP+L + +P +VG G +S Q G+ I + L Sbjct: 121 KRDDQGRVVTSDG-YPMLPE----LVVPSNATSISVGNDGTVSVTQAGQTSPTNIGNIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E+ TP ++ G T+ +GFLE SN + M EM MI Sbjct: 176 ATFSNPSGLTALGRNLFQESDSSGTPTTGTPGQNGIG-TLAQGFLEMSNVSVMEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + ++ + +A N+ Sbjct: 235 VGQRAYEVNSKAVQAADEMLQQA-NNL 260 >gi|117926379|ref|YP_866996.1| flagellar basal-body rod protein FlgG [Magnetococcus sp. MC-1] gi|117610135|gb|ABK45590.1| flagellar basal-body rod protein FlgG [Magnetococcus sp. MC-1] Length = 263 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 102/263 (38%), Gaps = 33/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A + + +A+N++NT+T GF+ + F +++ S Sbjct: 1 MIRALWTSATGMQAQQTNIDVIANNLANTNTAGFKRSRADFQDLLYQNMRAAGAATSQAG 60 Query: 61 SGKEYLS--------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 + G ++ TG ELD A+EG +F ++ P G TRDG Sbjct: 61 NQVPVGIQLGHGVRTVSVSKMFTQGDYVQTGNELDMAIEGKGFFQIQMPDGSTAYTRDGT 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMG 159 FK+ + G +V+A G VLD + +PQ VG G + + + Sbjct: 121 FKLDNSGQIVTADGY--VLDPG---LTLPQNATNVAVGPDGTVAVKTPDQADLTQVGQIQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L G + E+ + T ED G TV++ +LE SN N + EM M Sbjct: 176 LAQFINPAGLNAIGRNLYTESGASGAPVVGTAGEDGLG-TVQQQYLELSNVNMVEEMVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLE 236 I + + + + + + + Sbjct: 235 IASQRAYEINSKTVQTADDMLGK 257 >gi|258404727|ref|YP_003197469.1| flagellar basal-body rod protein FlgG [Desulfohalobium retbaense DSM 5692] gi|257796954|gb|ACV67891.1| flagellar basal-body rod protein FlgG [Desulfohalobium retbaense DSM 5692] Length = 262 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 111/268 (41%), Gaps = 32/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M T+ + A + + +A+N++N +T GF+ +V F +++ ++ ++ Sbjct: 1 MTTALSTAATGMEAQQTIVDVIANNLANVNTTGFKKSRVDFQDLLYQDARNVGSAVTQEN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y +G TG ELD A+EGD +F + P G TR G Sbjct: 61 DVPTGTQIGHGVRTAAVYKINTIGDINRTGNELDLAIEGDGFFQVTLPDGETAYTRAGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMG 159 K DG +V++ G YP+ I IP+ +G+ G + + T+ Sbjct: 121 KKDGDGRVVTSDG-YPLEPE----IVIPENATDVVIGKDGTVQAYLEGEAATPSDLGTIE 175 Query: 160 LYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L G N+ + P+ DL G + + FLEDSN ++M EM MI Sbjct: 176 LARFSNPAGLKNIGNNLHLETQSSGAPIVDLPGEDGLGALAQNFLEDSNVSTMQEMVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + ++ ML+ +A Sbjct: 236 SAQRAYEINSKAVKTADE-MLQMTNQLA 262 >gi|332525064|ref|ZP_08401244.1| flagellar basal-body rod protein FlgG [Rubrivivax benzoatilyticus JA2] gi|332108353|gb|EGJ09577.1| flagellar basal-body rod protein FlgG [Rubrivivax benzoatilyticus JA2] Length = 260 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 101/262 (38%), Gaps = 30/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + +L +++N++N T GF+ V+F +++ S Sbjct: 1 MLRSLWIAKTGMEGQQTKLDVISNNLANVGTNGFKRGGVQFEDLIYQNLRQAGAASSEQS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + + G+ TG D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPTGLQVGLGVRAAGTTRNFSQGNLQQTGNSYDIAIKGNGFFQIQMPDGTTGYTRDGGF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +V + G LV+ G YPV I IP + V + G + + + L Sbjct: 121 QVDNAGQLVTNQG-YPVQPG----ITIPADAKTVTVADDGTVQVTTAGNATPTTVGQLQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G + + TP G +++GF+E SN N + E+ MI Sbjct: 176 ANFINPAGLESLGGNLYAETAASGTPNTGTPGTNELGALQQGFVETSNVNVVEELVNMIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 236 TQRAYELNSKAIQTSDQMLQKL 257 >gi|147678402|ref|YP_001212617.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] gi|146274499|dbj|BAF60248.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] Length = 264 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 104/266 (39%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV-----------G 46 M A L+ R+ +V++N++N T G++ + F E++ Sbjct: 1 MIRGLYSAAAGMDVLQARVESVSNNLANASTPGYKREDITIRSFPEMLLIRQGGIQRKPA 60 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-----ESPRGIILT 101 I + V + ++ G TG D A++G A+FA+ ESP + T Sbjct: 61 GTPEAIGTASNGVLLSELFIDHTQGDLRETGDPADVAIKGPAFFAVSAPGPESPDRVCYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEISQKGKVIAT 157 R+G FK+ +G LV+A G Y VL I+I ++ G + G Sbjct: 121 RNGAFKIDQEGYLVTA-GGYRVLGEDGE-IRIEDFQLNDPARLSISPDGSVRIDGMEAGR 178 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + L D + P +V +G+LE N N + EM +I T Sbjct: 179 LMLVEFDDVNSLQKVGEGLF--EDPQGTGRPAVSSSVCQGYLEAPNVNVVDEMVSLITAT 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNIAS 243 + + + +I ++ + +A+ + S Sbjct: 237 RAYEANQRIIQSQDELLAKAVNQVGS 262 >gi|311694363|gb|ADP97236.1| flagellar basal-body rod protein FlgG [marine bacterium HP15] Length = 262 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 30/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + +ST+++N++N +T GF+ + F +++ I Sbjct: 1 MHPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQINRQPGGLTTQNS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ T LD A+ G + ++ P G I TRDG+F Sbjct: 61 ELPSGLQLGTGVRVVGTAKQFSQGNLQITEQPLDMAINGRGFLQVQLPDGQIAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ DG +V+ G YP+ I +P+ +G+ G ++ + + L Sbjct: 121 QLNADGDVVNPDG-YPLEPA----INVPENATNITIGKDGTVTAVTDDQAAPVNLGQITL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 QG N+ + N P E G+ ++++G +E SN + E+ MI Sbjct: 176 VDFINPQGLQAIGNNLFKATNASGDPAEGEPGLAGLGSIEQGSVESSNVEVVEELVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + ++ ++ + +NI Sbjct: 236 TQRAYEMNSKVVSTTDQMLQFITQNIG 262 >gi|226939372|ref|YP_002794445.1| flgG [Laribacter hongkongensis HLHK9] gi|226714298|gb|ACO73436.1| flgG [Laribacter hongkongensis HLHK9] Length = 260 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 104/263 (39%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + + RL + +N++N +T GF+ + F +++ + S Sbjct: 1 MLRSLYISKTGMDSSQFRLDVITNNLANVNTTGFKKGRAVFEDLMYQTIRQPGAQSSQNT 60 Query: 58 ------FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V +G + G+ T LD A+ G +F ++ P G I TRDG F Sbjct: 61 MLPTGLLVGTGAAPVAVDRQFSPGNLQQTNNALDMAINGRGFFTIQMPDGTIGYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ D G LV++ G I +PQ + +V + G +S + + I M L Sbjct: 121 KLDDQGQLVTSQGFLV-----DPQITVPQGAKSISVSKDGIVSVVLPGQTQPQQIGQMQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 QG + E + P D +G +++ FLE SN N E+ +MI Sbjct: 176 ADFINPQGLEPIGGNLYLETAASGAPTVANPTNDGTGA-IQQTFLEASNVNVTEELVEMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I ++ + Sbjct: 235 QAQRAYELNSRGIKTSDDMLARL 257 >gi|157363238|ref|YP_001470005.1| hypothetical protein Tlet_0374 [Thermotoga lettingae TMO] gi|157313842|gb|ABV32941.1| protein of unknown function DUF1078 domain protein [Thermotoga lettingae TMO] Length = 249 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 12/251 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDID 53 M L +L A+N++N +TV ++ K+ F + + I Sbjct: 1 MLRGIYTAAMGMLLDMSKLDVTANNLANVETVAYKRDKLAFRAYQDRAIYALPDRRQPIG 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 +L +G+F+ T +DFA++G+ +F+L G+ +R G FK+ ++G Sbjct: 61 NLTYSAVLDDVFLDSSMGTFMKTDNPMDFAIDGEGFFSLLGEDGVYYSRAGNFKLNEEGY 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDMSQGFVRR 172 LV+ G VLD + PI+ + + V G I G VI +G+Y+ D + Sbjct: 121 LVNTDGLM-VLDENNQPIRF---ESSYVVDADGYIRDPVGNVITRLGIYNFDDPGELRKI 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + P + G++E SN N++ EM +I + F + +++ Sbjct: 177 GYTLFQPTEESGQPVVADEFRILSGYVELSNVNAIDEMVNLIEAQRHFEISQKALTVSDE 236 Query: 233 SMLEAIRNIAS 243 ++ + I + S Sbjct: 237 TLAKLISQVGS 247 >gi|264676572|ref|YP_003276478.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni CNB-2] gi|299531284|ref|ZP_07044694.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni S44] gi|262207084|gb|ACY31182.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni CNB-2] gi|298720691|gb|EFI61638.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni S44] Length = 260 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N T G++ F +++ + + Sbjct: 1 MINSLFIAKTGMEAQQTQLDVISHNLANVSTTGYKRANAVFEDLIYQNLRQSGSQTTEQN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + GS + LD A+ G+ +F + P G TRDG F Sbjct: 61 QLPTGLHLGLGVRTVATSRNFLQGSLQQSSNALDVAINGNGFFEVNMPDGTIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V G LV++SG PV + I IPQ ++ G +S + + + + Sbjct: 121 EVDAQGQLVTSSG-LPVANG----ITIPQGATKVSISHDGVVSVTMPGQAAPQQVGNIAM 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G R N + P + G T+++G+LE SN N + E+ MI Sbjct: 176 SQFINAAGLEPRGQNLYVETASSGQPQQGTPGTNGLGTIQQGYLEASNVNVVQELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEMNSKAIQTSDQMLAKLAQ 259 >gi|315636319|ref|ZP_07891569.1| flagellar basal-body rod protein FlgG [Arcobacter butzleri JV22] gi|315479408|gb|EFU70091.1| flagellar basal-body rod protein FlgG [Arcobacter butzleri JV22] Length = 262 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 109/269 (40%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M A++ ++ ++N++N +T GF+ + +F +++ N + + Sbjct: 1 MIRGLYTAATGMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G STG LD A+ G +F + P G +R+G F Sbjct: 61 LNPTGIDVGLGVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQITLPSGETAYSRNGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVI--ATMGL 160 K+ ++G++V+ +G YP+ I +P + +VG G ++ Q G I + L Sbjct: 121 KLNEEGTIVNGNG-YPLQPE----IVVPNNVKDISVGTDGLVTAKDPQTGDTIELGQITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G +S P + P + G ++K+ LE SN + EM +I Sbjct: 176 ADFINPAGLTPLGDSLFMQSEASGPVVEGDPTTEQFG-SLKQSMLESSNVKLVNEMVDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + I + +ML+ + + S Sbjct: 235 TAQRAYEANSKAITTAD-NMLDIVNRLKS 262 >gi|303328380|ref|ZP_07358818.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] gi|302861710|gb|EFL84646.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] Length = 261 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S G +A + + +++N++N +T GF+ + +F +++ Sbjct: 1 MMRSLYTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDLMYQTMKIAGSITEGDN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 Q V + G F +TG LD A+EGD +F ++ ++ TR G FK Sbjct: 61 RLPVGIQVGMGVRPTAVHKFFTQGDFQNTGNALDVAVEGDGFFQVDVNGELMYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVI--ATMGLYS 162 + DG++V+A+G +P + + ++ G I+ +G+ I A + LY+ Sbjct: 121 LNQDGTVVTANGYIL-----QPEFAVPAETKNISISSTGHIAALDSEGQEIAGAEIPLYT 175 Query: 163 VDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G R + +P P D G T+ +GFLE SN + EM MI Sbjct: 176 FINPAGLDARGRNLYTPTEASGAETEGVPGTDNVG-TLAQGFLEMSNVEVVDEMVNMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + A++ Sbjct: 235 QRAYEVNSKAIQTSDSMLGMAVQ 257 >gi|289666050|ref|ZP_06487631.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670510|ref|ZP_06491585.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 261 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + R+S +++N++NT+T GF+ + F +++ S Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + GS TG LD + G +F ++ P G TRDG F Sbjct: 61 QLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ G LV+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 121 QINAQGQLVTNSG-YPLQPG----IQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P TP + G TV +G LE SN N++ E+ MI Sbjct: 176 TDFINPSGLQAKGENLFVETTASGPAQNGTPGLNGLGNTV-QGALEGSNVNTVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + N+ Sbjct: 235 ETQRAYEMNAKAISTTDSMLGYLNNNV 261 >gi|299131784|ref|ZP_07024979.1| flagellar basal-body rod protein FlgF [Afipia sp. 1NLS2] gi|298591921|gb|EFI52121.1| flagellar basal-body rod protein FlgF [Afipia sp. 1NLS2] Length = 256 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 16/255 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN------DIDQ 54 M+ + I L+ Q+ LE++L VA+N++N T G+++ F E + + + D+ Sbjct: 1 MENTTLIALSRQMTLERQLDVVANNVANVGTNGYKSDSSLFEEYLRSGAHEDNFAPGSDR 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 ++SFV G +T + LD A+ G +F +++P G TRDGRF++ G L Sbjct: 61 RVSFVQDRATVRDFSQGPLENTKSPLDVAISGKGFFTVQTPGGERYTRDGRFQINSQGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK-------GEISQKGKVIATMGLYSVDMSQ 167 V++SG YPVL V I D + + G I+Q + + L S Q Sbjct: 121 VNSSG-YPVLGTNGV-ITFQPTDHDIKITDDGTITVLEGTITQTDSLRGKLKLTSFANRQ 178 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 ++E S + + + TVK GF+E SN N++ EM +M+ +T+ + +I+ L+ Sbjct: 179 QL-QKEGSNLFAAPANVTGQADTVSTVKEGFIERSNVNAIAEMSRMLEITRTYQNISNLM 237 Query: 228 DENEKSMLEAIRNIA 242 + AI+++A Sbjct: 238 QQQADLRKNAIQSLA 252 >gi|221069320|ref|ZP_03545425.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni KF-1] gi|220714343|gb|EED69711.1| flagellar basal-body rod protein FlgG [Comamonas testosteroni KF-1] Length = 260 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N T G++ F +++ + + Sbjct: 1 MINSLFIAKTGMEAQQTQLDVISHNLANVSTTGYKRANAVFEDLIYQNLRQSGSQTTEQN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + GS + LD A+ G+ +F + P G TRDG F Sbjct: 61 QLPTGLHLGLGVRTVATSRNFLQGSLQQSSNALDVAINGNGFFEVNMPDGTIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V G LV++SG PV + I IPQ ++ G +S + + + + Sbjct: 121 EVDSQGQLVTSSG-LPVANG----ITIPQGATKVSISHDGVVSVTMPGQAAPQQVGNIAM 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G R N + P + G T+++G+LE SN N + E+ MI Sbjct: 176 SQFINAAGLEPRGQNLYVETASSGQPQQGTPGTNGLGTIQQGYLEASNVNVVQELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEMNSKAIQTSDQMLAKLAQ 259 >gi|190574261|ref|YP_001972106.1| flagellar basal body rod protein FlgG [Stenotrophomonas maltophilia K279a] gi|194365678|ref|YP_002028288.1| flagellar basal body rod protein FlgG [Stenotrophomonas maltophilia R551-3] gi|190012183|emb|CAQ45806.1| putative flagellar basal-body rod protein [Stenotrophomonas maltophilia K279a] gi|194348482|gb|ACF51605.1| flagellar basal-body rod protein FlgG [Stenotrophomonas maltophilia R551-3] Length = 261 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 105/265 (39%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + R+S V++N++NT+T GF+ + F +++ Sbjct: 1 MNQALWIAKTGLDAQQMRMSVVSNNLANTNTTGFKQDRASFEDLLYQQVRQPGGSSSAQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V + E G TG LD + G +F ++ P G TRDG F Sbjct: 61 QLPTGLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 K+ D LV+ SG YPV IQIP+ + +G G IS K + + L Sbjct: 121 KINQDSELVTNSG-YPVQPG----IQIPEGAQSVTIGTDGTISVKMADGAASVEVGALTL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-----TVKRGFLEDSNANSMYEMGQMIH 215 G R + P ++ + TV +G LE SN N + E+ MI Sbjct: 176 TDFVNPAGLQARGENLFLETTASGPAQNGNPGLNGLGTVVQGALEGSNVNVVEELVSMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + I + SML + N Sbjct: 236 TQRAYEMNAKAISTTD-SMLGYLNN 259 >gi|224417699|ref|ZP_03655705.1| flagellar basal body rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253827048|ref|ZP_04869933.1| flagellar distal rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253510454|gb|EES89113.1| flagellar distal rod protein FlgG [Helicobacter canadensis MIT 98-5491] Length = 263 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 110/266 (41%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + L + ++ ++N+SN +T G+R + +F+++ + S Sbjct: 1 MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G S G+F T LD A+ G+ +F +E P G TRDG F Sbjct: 61 LSPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ D+G++V++ G V I IP N+G G +S + + + Sbjct: 121 KLDDEGNVVNSQGYLLV-----PNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIET 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G ++ ++ N P+ G+ +++GF+E SN + EM +I Sbjct: 176 VNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIV 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ + + Sbjct: 236 GQRAYEANSKSIQTAD-SMLQIVNQL 260 >gi|188587423|ref|YP_001918968.1| flagellar basal-body rod protein FlgG [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352110|gb|ACB86380.1| flagellar basal-body rod protein FlgG [Natranaerobius thermophilus JW/NM-WN-LF] Length = 265 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 110/269 (40%), Gaps = 34/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S G + A ++ + V++N++N +T G++ + +F +++ A D Sbjct: 1 MFRSLWTGASGMNAQQKNMDVVSNNLANANTTGYKNSRAEFQDLIYATLERPDGPDDLGD 60 Query: 54 ---------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRD 103 Q + GS T + D A+EGD +F +E G TRD Sbjct: 61 DGRSTPAGIQIGHGAKNSATLRDFSTGSMQETEQDFDLAIEGDGFFIIEGTEGEEYYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATM 158 G FK+ +G+LV++ G + V IPQ+ ++ E+G + + I + Sbjct: 121 GSFKIDGEGNLVTSDGLH-VQSFDGE---IPQEATNVSITEEGRVIATLEDGETDEIGEI 176 Query: 159 GLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + S G + ++ S P E+ G +++GFLE SN N EM Sbjct: 177 EIASFINPAGLEAQGSNLYSATAASGDASVGLPGENGRG-QLQQGFLEGSNVNIAEEMVN 235 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + + I ++ M N+ Sbjct: 236 MITAQRAYETNSKSIQSTDEMM-SIANNL 263 >gi|116327820|ref|YP_797540.1| flagellar basal body rod protein FlgG [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120564|gb|ABJ78607.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 265 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 35/267 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKIS 57 M S +A + + T+++N++N +T GF+ + F ++V + +S Sbjct: 1 MMRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVS 60 Query: 58 FVASGKEYLS----------KEVGSFISTGTELDFALEGD-AWFALESPRGI-ILTRDGR 105 + +G E+GSF +TG +LD A+ G+ +F ++ P G +RDG Sbjct: 61 EIPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQMPDGSFAFSRDGS 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKD--EIFNVGEKGEISQ------KGKVIAT 157 FK+ + +V+++G P+ +P+ + E+GE++ + VI Sbjct: 121 FKIDSNQQVVTSNGYLL-----EPPLILPEGAILNTLMISEQGEVTVKVGADIRPIVIGQ 175 Query: 158 MGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 + LY G + +E P IP TP + G V +GFLE SN + EM Sbjct: 176 VELYRFVNPAGLQAIGKNLFQETVASGPEIPGTPGMEGFG-NVLQGFLEMSNVKIVEEMV 234 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S + I ++ + AI Sbjct: 235 AMIVAQRAYESNSKAIQTSDNMLSTAI 261 >gi|242278483|ref|YP_002990612.1| flagellar basal-body rod protein FlgF [Desulfovibrio salexigens DSM 2638] gi|242121377|gb|ACS79073.1| flagellar basal-body rod protein FlgF [Desulfovibrio salexigens DSM 2638] Length = 255 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 23/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M++S L ++ E R+ A+N++N +T GF+ F + +D Sbjct: 1 MRSSIFSALFGAMSNEHRIDISANNLANVNTTGFKRDNCAFQDTFIRFAHDYVADAKPYL 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 + ++ +E + GSF TG LD A+ GD +F ++ LTR+G Sbjct: 61 RDKDQLPEAKIMARPRLSEEVIDMSQGSFQKTGNPLDLAIRGDGFFKVQKNGETFLTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F ++ +G+LV+ G YPV+ + +P + V +G I G+ + + Sbjct: 121 VFTLSSEGTLVTEQG-YPVMANGGE-VNLPPRSR-VAVDGEGVIFADGQEVGRLDFVQPA 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + + S P E V +G++E SN + EM MI + F Sbjct: 178 DYRALKKEGENLFSNEGGEVPAEG----EVAQGYIEKSNVEVVNEMVAMIECQRSFEMYQ 233 Query: 225 TLIDENEKSMLEAIRNIA 242 +I ++ + I+ + Sbjct: 234 KMITTTDQLDQKVIQQVG 251 >gi|119503646|ref|ZP_01625729.1| hypothetical protein MGP2080_03865 [marine gamma proteobacterium HTCC2080] gi|119460708|gb|EAW41800.1| hypothetical protein MGP2080_03865 [marine gamma proteobacterium HTCC2080] Length = 261 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S I A + +++T+++N++N T GF+ +V F +++ + + S Sbjct: 1 MSQSLWIAKTGLDAQQTKMATISNNLANAGTNGFKRGRVIFEDLLYQNVRQVGAQSSQDT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V +G ++ G+ T LD A++G + + P G TRDG F Sbjct: 61 VLPSGLQVGTGARVVATERLFTQGNLSQTDNPLDLAIQGRGFVEVLMPDGSQGFTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ D G +V+A+G PI IPQ ++ G +S + + + L Sbjct: 121 QINDQGVMVTAAGYQV-----QPPITIPQDALSISIAPDGTVSVQQPGTPQATQVGVIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G R + +P P + G T+++GF+E SN N + E+ MI Sbjct: 176 TDFVNPSGLQARGENLFLETGASGAPLPGNPGLNGLG-TLQQGFVEGSNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ + +N+ Sbjct: 235 ETQRAYEMNSKAISTADQMLQYVSQNL 261 >gi|302390534|ref|YP_003826355.1| flagellar basal-body rod protein FlgF [Thermosediminibacter oceani DSM 16646] gi|302201162|gb|ADL08732.1| flagellar basal-body rod protein FlgF [Thermosediminibacter oceani DSM 16646] Length = 260 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKI 56 M + LA R +++N++N +T GF+ + F + + Sbjct: 1 MIRGLYTSASGMLAEMARTDVISNNLANINTTGFKKDRAVFRAFPEMNIHRYDDPQPVGA 60 Query: 57 SFVASGKEY--------------LSKEVGSFISTGTELDFALEGDA-----WFALESPRG 97 FV Y + G T LD A+E A +F +++P G Sbjct: 61 GFVIDPVPYIGVLGTGAGLDEIRVDFTQGRIEMTSNPLDLAIEDTAAGETSFFEIQTPAG 120 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 I TRDG F + DG LV+ G Y V+ PI + + + +GE+ G ++ Sbjct: 121 IRYTRDGSFTINADGFLVTREGYY-VMGENG-PINL-RNGSKVEINTEGEVYLDGLMVDR 177 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + + + ++ ++ P P + + +G LE +N N++ EM +I Sbjct: 178 LRIAAFPAGLSLEKQGDNLYRAQGVPLP----ANARIIQGALERANVNAVSEMVNLISAF 233 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 + + + ++ ++ ++ A+ IA Sbjct: 234 RAYEANQRMVRAHDDTLAGAVNEIA 258 >gi|187918628|ref|YP_001884193.1| flagellar basal-body rod protein FlgF [Borrelia hermsii DAH] gi|119861476|gb|AAX17271.1| flagellar basal-body rod protein FlgF [Borrelia hermsii DAH] Length = 282 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 114/284 (40%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + +A RL +++N++N D G++ F E++ ND Sbjct: 1 MVRGIYTAASGMMAQRHRLDVISNNLANIDLAGYKKDLSVHKAFPEMLIRRLNDDGLYKL 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y S E G TG LD AL + +F +++P G T Sbjct: 61 PKGYLETAPVVGKLGTGVEENEIYTSFEQGPLKITGNPLDLALTDEGFFVVQTPEGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ G YPV+ I KD F + ++G+I Sbjct: 121 RNGSFTLGPEGMLVTKDG-YPVIGEKGH---IYLKDNNFKITDQGQIFHNTTFEENPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED---LSGVTVKRGF 198 + +++ + + + + ++ ++ +S + ++ S ++ G Sbjct: 177 VSEYENSWENYELLDNLKIVNFEKTRFLKKQGSSLWNRTEISGQAKNIEINSRPKIETGA 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEGSNVNAINEMVSMITVNRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|149201611|ref|ZP_01878585.1| Flagellar distal rod protein [Roseovarius sp. TM1035] gi|149144659|gb|EDM32688.1| Flagellar distal rod protein [Roseovarius sp. TM1035] Length = 262 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 32/265 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID--------- 53 ++ A + R+ +++N++N +T GF+ + F ++ Sbjct: 4 NVMHVAKTGLNAQQARIQVISNNLANVNTTGFKRDRANFETLLYQTLRPAGAQTSEATEQ 63 Query: 54 QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 + + +G +S E GS +T LD A++G +F + P G I TR+G F Sbjct: 64 TAPTTLGTGVRLVSTEKMYTQGSLTTTDNALDLAIDGKGFFQVLMPDGRIGYTRNGTFSQ 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYS 162 DG L ++SG Y V IQIP + ++ G IS + + + + L Sbjct: 124 NADGVLTTSSG-YVVQPE----IQIPPEATSISISRDGIISVTLPDAVEAEEVGQLTLAQ 178 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G E++ + PLED G + +G LE SN N + E+ +MI Sbjct: 179 FANPRGLEPVGETFVVESTASGAPVVGNPLEDGMGD-LVQGALETSNVNVVQELVEMIEA 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ M N+ Sbjct: 238 QRAYEINSRSISASDEMMSYLANNL 262 >gi|238788317|ref|ZP_04632111.1| Flagellar basal-body rod protein flgG [Yersinia frederiksenii ATCC 33641] gi|238723563|gb|EEQ15209.1| Flagellar basal-body rod protein flgG [Yersinia frederiksenii ATCC 33641] Length = 260 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 107/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV++ G I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTSGGF-----QIQPAITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFINNSGLESVGENLYQETASSGAPNDSTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|42526517|ref|NP_971615.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] gi|41816710|gb|AAS11496.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] Length = 270 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 113/271 (41%), Gaps = 36/271 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + + LA +++L +++N++N DT F+ + F E++ ND Sbjct: 1 MVRGWYTAASGMLAQQRQLDVISNNLANLDTTSFKRDVSVQKSFPELLLRRLNDDGVIKN 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 I + V + + + E GS T + D ALEG +FA+E+P G T Sbjct: 61 PFGSSDIAPIIGKLGLGVETNEIFTEFEQGSLKQTSSPADLALEGQGFFAVETPYGEKYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGK 153 R+G F + +G L++ G YPV+ +I +D + + + G+I Sbjct: 121 RNGNFMIGVEGYLMTKEG-YPVMGENG---RIFLQDMEYKINQDGQIYVRPITEPESDSV 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIP----PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + + + + ++ + S + P E S V +GF+E SN N + E Sbjct: 177 YLDRLKIVEFENDR-YLSKNGSSFYLDTPLSGKAIAAEGPSRPVVVQGFIEASNVNVVNE 235 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 M +MI + + + + I + M + Sbjct: 236 MVRMIEVNRAYEANQKSIQAEDTMMAKLWNE 266 >gi|322832566|ref|YP_004212593.1| flagellar basal-body rod protein FlgG [Rahnella sp. Y9602] gi|321167767|gb|ADW73466.1| flagellar basal-body rod protein FlgG [Rahnella sp. Y9602] Length = 260 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIPSLYIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 NLPSGLQIGTGVRPVSTERLFSQGNLSQTSNSKDIAVKGEGFFQVQLPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV++SG Y V+ I +P VG G +S + + + L Sbjct: 121 QVDQNGQLVTSSG-YQVIPA----ITVPANALSMTVGRDGIVSVTTQGQTAAQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 STFINNSGLESLGENLYQETQSSGAPTESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + + +++ + + Sbjct: 235 QTQRAYEINSKAVSTSDEMLQKL 257 >gi|220903671|ref|YP_002478983.1| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867970|gb|ACL48305.1| flagellar basal-body rod protein FlgG [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 261 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G +A + + +++N++N +T GF+ + +F +++ Sbjct: 1 MMRSLWTGATGMVAQQLNIDVISNNLANVNTTGFKKSRAEFEDLMYQTMRMAGSITEGDN 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V G + G F +TG LD A+EGD +F ++ ++ TR G FK Sbjct: 61 RLPVGIQVGMGTRPTAVHKFFTQGDFQNTGNTLDVAIEGDGFFQVDVNGELMYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI--ATMGLYS 162 + DG +V+A+G +P + + ++ G I+ +G+ I A + LY+ Sbjct: 121 LNQDGVVVTANGYIL-----QPEFAVPPETKNISISSSGHIAALDAQGQEIAGAEIPLYT 175 Query: 163 VDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G R + +P + P D G T+ +GFLE SN + EM MI Sbjct: 176 FINYAGLDARGRNLFTPTEASGEAVEGIPGTDNVG-TLAQGFLEMSNVEVVDEMVNMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + A++ Sbjct: 235 QRAYEVNSKSIQTSDSMLGIAVQ 257 >gi|84624090|ref|YP_451462.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898985|ref|YP_201214.2| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae KACC10331] gi|166712060|ref|ZP_02243267.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzicola BLS256] gi|188576758|ref|YP_001913687.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576950|ref|YP_001913879.1| flagellar basal body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368030|dbj|BAE69188.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521210|gb|ACD59155.1| flagellar basal-body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521402|gb|ACD59347.1| flagellar basal-body rod protein FlgG [Xanthomonas oryzae pv. oryzae PXO99A] Length = 261 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + R+S +++N++NT+T GF+ + F +++ S Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + GS TG LD + G +F ++ P G TRDG F Sbjct: 61 QLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ G LV+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 121 QINAQGQLVTNSG-YPLQPG----IQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P TP + G TV +G LE SN N++ E+ MI Sbjct: 176 TDFINPSGLQSKGENLFVETTASGPAQNGTPGLNGLGNTV-QGALEGSNVNTVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + N+ Sbjct: 235 ETQRAYEMNAKAISTTDAMLGYLNNNV 261 >gi|195940720|ref|ZP_03086102.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. EC4024] gi|295096223|emb|CBK85313.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 260 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGIVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGTPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|242238971|ref|YP_002987152.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech703] gi|242131028|gb|ACS85330.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech703] Length = 260 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSDQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S E G+ T D A+ G +F + P G TRDG F Sbjct: 61 NLPSGLQLGTGVRPVSTERLHSQGNLEQTENTKDIAINGQGFFEVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ +G LV+ASG Y V I IP + V G +S + + + L Sbjct: 121 QLDANGQLVTASG-YTVQPA----ITIPTTAQTMTVARDGTVSVTLQGQTASTQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP ++ +GV + +G++E SN N E+ MI Sbjct: 176 STFINPAGLQSLGENLYQETQSSGAPTQSTPGQNGAGV-LYQGYVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + + ++ SML+ + I Sbjct: 235 QVQRAYEINSKAVSTSD-SMLQRLTQI 260 >gi|296102906|ref|YP_003613052.1| flagellar basal body rod protein FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057365|gb|ADF62103.1| flagellar basal body rod protein FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 260 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGTPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|77464905|ref|YP_354409.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides 2.4.1] gi|77389323|gb|ABA80508.1| putative flagellar basal body rod protein [Rhodobacter sphaeroides 2.4.1] Length = 239 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + + +VA+N++N T GFR + F+E V ++ + ++ + Sbjct: 1 MDAAGYTTLTRQSGLMREMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASAS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + + G TG DFA+ G+ +F +E+P+G LTR G F +G LV A G Sbjct: 61 ARQ--IDLTQGGLTHTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +LD + P+ IP + G +S + I +GL+ G + S Sbjct: 119 -RLLDAGAAPLFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRHEGGTRFSAE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E G T+ +G LEDSN + E+ +MI + + + + +D + + +R Sbjct: 178 GGTEPAE---GATLVQGALEDSNVEPVSEIARMIEVQRAYEMGQSFLDREDDRIRTTVRT 234 Query: 241 IA 242 + Sbjct: 235 LG 236 >gi|290474974|ref|YP_003467858.1| flagellar basal body rod cell-distal protein [Xenorhabdus bovienii SS-2004] gi|289174291|emb|CBJ81081.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Xenorhabdus bovienii SS-2004] Length = 260 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTERQPGAMSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G ++ E G+ T D A++G +F ++ P G TRDG F Sbjct: 61 NLPSGLQIGTGVRPVATERLHSQGNLAQTNNSNDVAIKGQGFFQIQMPDGTTGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G LV+A G V I IP ++ G +S + + + L Sbjct: 121 QKDQNGQLVTAGGFQVV-----PAIIIPDNATKMSIARDGIVSINVQGQNAPQQVGQLTL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + N P+E+ G+ + +G++E SN N E+ MI Sbjct: 176 TTFINESGLESIGENLYLETNSSGVPVENAPGINGAGLLYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + + +++ + + + Sbjct: 236 VQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|303248240|ref|ZP_07334503.1| flagellar basal-body rod protein FlgF [Desulfovibrio fructosovorans JJ] gi|302490378|gb|EFL50289.1| flagellar basal-body rod protein FlgF [Desulfovibrio fructosovorans JJ] Length = 261 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 22/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M+ S + L+ E RL+ A+N++N +T G++ +V F + +D Sbjct: 1 MEMSMLSAVFGALSTELRLNLSANNLANVNTTGYKRDRVSFEDTFLRYAHDYHMDPRGNL 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 ++ ++ + G+ TG LD A++G +F + S TR+G Sbjct: 61 REKELLPRADLVATPRLAEQQIDFSQGALQLTGNPLDVAIQGQGFFKVASGGTTYYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F G LV+ YPV+ P+QIP ++ G I G + + + V Sbjct: 121 AFHRDAQGMLVTDQ-NYPVIGNGG-PVQIP-DGRDISIDGAGSIYVDGAQVGQIDVVRVQ 177 Query: 165 MSQGFVRRENSGISPNIPPTPLED---LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + + + T E V +G+LE N + EM MI + + Sbjct: 178 NPESLQKYGANLYMAQSGATVREGAVADGETRVAQGYLEKPNVQVVEEMVNMIETQRTYE 237 Query: 222 SITTLIDENEKSMLEAIR 239 + ++ ++IR Sbjct: 238 AYQKVMTNTNDLDTKSIR 255 >gi|114762163|ref|ZP_01441631.1| putative flagellar basal body rod protein [Pelagibaca bermudensis HTCC2601] gi|114545187|gb|EAU48190.1| putative flagellar basal body rod protein [Roseovarius sp. HTCC2601] Length = 237 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 6/236 (2%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 L+ Q L + + VA+N++N T G+R V FSE V D D ++ AS Sbjct: 6 YTTLSRQQGLMREMRMVANNIANMATTGYRQQGVVFSEYVRQT--DRDGSVAMTASHVRN 63 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 S GS TG +LD A+EG+ +F +++P G LTR G F + G LV+ G + VLD Sbjct: 64 TSFAQGSLTRTGGQLDLAIEGEGFFLVQTPAGERLTRAGNFASSSAGDLVTQDG-HLVLD 122 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP 185 P+ IP +G+ G +S G I +G+ VR P Sbjct: 123 SGGAPVFIPPDATDLAIGQDGTLSSNGAPIGQIGIVQPLDPGALVREGGVLFRAEAGYDP 182 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E V++GF+E +N + + ++ +MI + + + + ++ + AI+++ Sbjct: 183 AEAP---RVRQGFVESANVDPILQIARMIEVQRAYEMGQNFLQREDERVRAAIKSM 235 >gi|27381995|ref|NP_773524.1| flagellar basal body rod protein FlgF [Bradyrhizobium japonicum USDA 110] gi|27355165|dbj|BAC52149.1| flagellar basal body rod protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 136/242 (56%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++ +GL+AQ+ALE+RL T+A+N++N +T FRT VKF V+ + ++F + Sbjct: 1 MQSALYVGLSAQVALEKRLQTIANNVANVNTAAFRTDVVKFETVLSKAGAN---PVAFSS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +S+E G+ +G LD A+ G W A P G + TRDGR ++ +G L + +G Sbjct: 58 PGDNIISRETGNITESGNPLDVAVVGQGWLAFAGPNGTVYTRDGRLQIAANGDLQTVAG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +PV+D I + ++ G I+Q I T+GL+++ R NSG++P+ Sbjct: 117 FPVIDAGGAQITLDPNGGPVSIARSGAITQDNNEIGTIGLFNIPTDANLERYGNSGVTPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P T + D S K+G++E S AN M E+ +++ ++ F+ ++I+ E S+ AIR Sbjct: 177 RPATAIADFSRDGFKQGYVEGSGANPMMELTKLMAASRAFDGTNSMIEGTESSLQNAIRT 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|154174905|ref|YP_001408076.1| flagellar basal body rod protein FlgG [Campylobacter curvus 525.92] gi|112802860|gb|EAU00204.1| flagellar basal-body rod protein FlgG [Campylobacter curvus 525.92] Length = 262 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 107/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +A + ++ ++N++N +T G++ + +F++++ + S Sbjct: 1 MMRSLYTAATGMIAQQTQIDVTSNNIANVNTYGYKKNRAEFADLMYQVMEYAGTATSQTT 60 Query: 61 SGKEYL-------------SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + G F T LD + G+ +F L+ P G TR+G F Sbjct: 61 TSPTGIEVGLGVRPTAINKIFSQGYFKETSNNLDMVIAGNGFFQLQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ +G++V++ G + I +P ++G G +S I + + Sbjct: 121 KLDSNGTIVNSDGYQLI-----PQIVVPANATQISIGTDGTVSVLQAGETNMAQIGQIQI 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G N+ + + ++G+ T+++GF+E SN + EM +I Sbjct: 176 ANFINPAGLHSMGDNNYLETAASGDAVVGVAGLDGLGTIRQGFVEMSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I SMLE + + Sbjct: 236 GQRAYEANSKAI-TTSDSMLEIVNGL 260 >gi|78043762|ref|YP_359848.1| flagellar basal-body rod protein FlgG [Carboxydothermus hydrogenoformans Z-2901] gi|77995877|gb|ABB14776.1| flagellar basal-body rod protein FlgG [Carboxydothermus hydrogenoformans Z-2901] Length = 261 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 23/260 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + + ++ VA+N+SN +T+G+++ +V F +++ N S+V Sbjct: 1 MIRSLYSGISGLKSHQYKMDVVANNISNVNTIGYKSSRVNFEDLIYQKTNQSGVYPSYVG 60 Query: 61 SGKEY----LSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSL 114 G G STG LD A++G+ +F L+ P +R+G F + DG L Sbjct: 61 LGVNVSGVDTIFTQGGLKSTGRPLDVAIQGNGFFVLKDPVTTRTYYSREGVFYLDKDGYL 120 Query: 115 VSASGKYPVLDMASVPIQI--PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQ 167 ++ G Y V D+ IQI P+ + G+I + +GL S + Sbjct: 121 INGHG-YRVQDVNGADIQINNPEAVVTLTIQNDGQIKLVRSDGTTEFAGPIGLMSFKNPE 179 Query: 168 GFVRRENSGISPNI--------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 R + S I P TP + G+ + G+LE SN + E +MI + Sbjct: 180 TLERIGQNVYSATIDTQTSFSSPVTPGQQGQGI-LVSGYLEMSNVDLASEFTEMIVTQRG 238 Query: 220 FNSITTLIDENEKSMLEAIR 239 + + +I +++ + E + Sbjct: 239 YQANARVITTSDQMLEELLN 258 >gi|308173591|ref|YP_003920296.1| flagellar hook protein [Bacillus amyloliquefaciens DSM 7] gi|307606455|emb|CBI42826.1| flagellar hook protein [Bacillus amyloliquefaciens DSM 7] gi|328553477|gb|AEB23969.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens TA208] gi|328911732|gb|AEB63328.1| flagellar hook protein [Bacillus amyloliquefaciens LL3] Length = 258 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 116/257 (45%), Gaps = 20/257 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQ 54 M S G++ + +L + +N++N +TVGF+ +V F +++ G+ + Q Sbjct: 1 MLRSLYSGISGMKNFQTKLDVIGNNIANVNTVGFKKSRVTFKDMISQTVAGGSNVTNSKQ 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 A+ + G+ +T + D A++GD +F + + GI+ TR G F + G+L Sbjct: 61 IGLGAATSSIDVVHSTGAPQATQNKSDLAIDGDGYFQINTGSGIVYTRAGNFGKDNKGNL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGF 169 V+ G Y + + I IP + +++G G ++ +GL + S G Sbjct: 121 VTTDGYY-LEKIGGGKINIPTDAKDYSIGADGTVTYTDAGDAVHNAGQIGLVTFPNSSGL 179 Query: 170 VRRENSGI-------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + + + TP E+ +G + G+LE SN + E +MI + F S Sbjct: 180 EKIGGNLYRESLSSGAASAVTTPGENGTG-KLLAGYLEMSNVDLTDEFTEMIVAQRGFQS 238 Query: 223 ITTLIDENEKSMLEAIR 239 + +I +++ + E + Sbjct: 239 NSKIITTSDEILQELVN 255 >gi|187918627|ref|YP_001884192.1| flagellar basal body rod protein FlgG [Borrelia hermsii DAH] gi|119861475|gb|AAX17270.1| flagellar basal-body rod protein FlgG [Borrelia hermsii DAH] Length = 265 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 110/269 (40%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ + + Sbjct: 1 MMRALWTAASGMKAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQRRAGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + E G+ +T D A+EG+ ++ + P G TRDG F Sbjct: 61 VSPLGNQVGHGTKVSATHRIFEQGNLQATNLNTDVAIEGNGFYKILLPDGTYGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ +G+LV++ G Y +L I P+ + + ++G IS + + M Sbjct: 121 KIDANGALVTSQG-YKLLPD----ISFPEGYIKDSITISQEGIISVKVDESPEPIELGQM 175 Query: 159 GLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G N+ G I TP D G +++G LE SN + EM Sbjct: 176 EIVRFVNPAGLNAIGNNIFKETIGSGEEISGTPGSDGMG-RLRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|257457573|ref|ZP_05622740.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] gi|257444959|gb|EEV20035.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] Length = 271 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 108/272 (39%), Gaps = 34/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND------ 51 M + + A +++L +A N++N DT ++ F E++ ND Sbjct: 1 MIRGWYTAASGMNAQQKQLDVIAQNLANADTTSYKRDVATHKNFPELLIRRLNDDGVVKN 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 I + V + + E GS T T D ALEG +F +E+P G T Sbjct: 61 PFGSSDVAPIIGKLGLGVELNEIFTEFEQGSLKQTNTASDLALEGKGFFCVETPYGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGK 153 R+G F V +G L++ G YPVL +I +D+ + V + GE+ Sbjct: 121 RNGNFTVGVEGYLMTKEG-YPVLGENG---RIFLQDQEYKVNQNGEVYARPMTEPDSDST 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPN---IPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + + + + + + +S P E V +GF+E SN + EM Sbjct: 177 LADRLKIVTFENDRYLKKHGSSFYLDTPVSGPAIAAEGGDRPVVVQGFVEASNIKVVNEM 236 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +MI + + + + I + M + +A Sbjct: 237 VRMIEVNRAYEANQKTIQSEDTMMSKLWNEVA 268 >gi|157165544|ref|YP_001467096.1| flagellar basal body rod protein FlgG [Campylobacter concisus 13826] gi|112799947|gb|EAT97291.1| flagellar basal-body rod protein FlgG [Campylobacter concisus 13826] Length = 262 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 107/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +A + ++ + N++N +T G++ + +F++++ + S Sbjct: 1 MMRSLYTAATGMIAEQTQIDVTSHNIANVNTYGYKKNRAEFADLMYQVMEYAGTATSQTT 60 Query: 61 SGKEYL-------------SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + G F T LD + G+ +F ++ P G TR+G F Sbjct: 61 TSPTGIEVGLGVRPTAINKIFSQGYFKETSNNLDMVIAGNGFFQIQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ +G++V++ G + I +P ++G G +S I + L Sbjct: 121 KLDANGTIVNSDGYQLI-----PQITVPANATQISIGTDGTVSVLQAGETDMAQIGQIEL 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G N+ + + + ++G+ T+++GF+E SN + EM +I Sbjct: 176 ANFINPAGLHSMGDNNYLQTSASGDVVVGVAGLDGLGTIRQGFVEMSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I SMLE + + Sbjct: 236 GQRAYEANSKAI-TTSDSMLEIVNGL 260 >gi|239826621|ref|YP_002949245.1| flagellar basal body rod protein FlgG [Geobacillus sp. WCH70] gi|239806914|gb|ACS23979.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. WCH70] Length = 264 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 26/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G+ A + +L + +N++N +T GF+ + F ++V G N Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLVSQQIAGASGPTANRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 V G + GS +TG LD A+ GD +F L G + TR G F Sbjct: 61 GVNPKQVGLGSQLAAIDTVHTQGSLQTTGRPLDLAISGDGFFVLGDKNGGNHVYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV--IATMGLYS 162 + DG++V+A G Y +L + + I IP E F++G G ++ + G + + L Sbjct: 121 YLDKDGNIVNADGLY-LLGIGNKLINIPSSAESFSIGSDGTVNYIENGSLKSAGQIQLAK 179 Query: 163 VDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + + G + ++ P + +G T+ G LE SN + E +MI Sbjct: 180 FNNNDGLEKAGDNLFRQTANSGTATTGAPGANGTG-TIVAGTLEMSNVDLAEEFTEMIVA 238 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F + T +I +++ + E + Sbjct: 239 QRGFQANTRIITTSDEILQELVN 261 >gi|258514025|ref|YP_003190247.1| flagellar basal-body rod protein FlgF [Desulfotomaculum acetoxidans DSM 771] gi|257777730|gb|ACV61624.1| flagellar basal-body rod protein FlgF [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 16/256 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M G A L+++++ +A+N++N +T GF+ + + N ID Sbjct: 1 MIRGIYSGAAGMNVLQEKMNVMANNLANVNTNGFKMDQAVVKSFNEQLINLIDTGKDIRK 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V + G F TG + D AL+G+ +F + G TRDG F + Sbjct: 61 LRPIGNFCHGVTVDEINTYFTQGVFQQTGHDTDLALDGEGFFRVSGAEGDYYTRDGAFSL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 ++G LV++ G Y ++ + + + +G G+I G T+ + + D Q Sbjct: 121 DNEGYLVTSRG-YTLMGQNGP--VMTEPGKNLKIGSDGKIYLDGVEQDTLDIKNFDDLQK 177 Query: 169 FVRRENSGIS-PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + ++ N + D + T+K+GFLE SN + EM +I +++ + + L+ Sbjct: 178 LKKEGDNFFRVENEADAGVYDATNFTLKQGFLEKSNVELVNEMTDIIAVSRAYETSQKLM 237 Query: 228 DENEKSMLEAIRNIAS 243 ++ + +A+ NI + Sbjct: 238 QVQDELLGKAVNNIGT 253 >gi|325923276|ref|ZP_08184949.1| flagellar basal-body rod protein FlgG [Xanthomonas gardneri ATCC 19865] gi|325546203|gb|EGD17384.1| flagellar basal-body rod protein FlgG [Xanthomonas gardneri ATCC 19865] Length = 261 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + R+S +++N++NT+T GF+ + F +++ S Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + GS TG LD + G +F ++ P G TRDG F Sbjct: 61 QLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ G +V+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 121 QINAQGEVVTNSG-YPLQPG----IQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P TP + G TV +G LE SN N++ E+ MI Sbjct: 176 TDFINPSGLQSKGENLFVETTASGPAQNGTPGLNGLGTTV-QGALEGSNVNTVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + N+ Sbjct: 235 ETQRAYEMNAKAISTTDSMLGYLNNNV 261 >gi|325473455|gb|EGC76650.1| flagellar basal-body rod protein FlgG [Treponema denticola F0402] Length = 270 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 36/271 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + + LA +++L +++N++N DT F+ + F E++ ND Sbjct: 1 MVRGWYTAASGMLAQQRQLDVISNNLANLDTTSFKRDVSVQKSFPELLLRRLNDDGVIKN 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 I + V + + + E GS T + D ALEG +FA+E+P G T Sbjct: 61 PFGSSDIAPIIGKLGLGVETNEIFTEFEQGSLKQTSSPADLALEGQGFFAVETPYGEKYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGK 153 R+G F V +G L++ G YPV+ +I +D + + + G+I Sbjct: 121 RNGNFMVGVEGYLMTKEG-YPVMGENG---RIFLQDMEYKINQDGQIYVRPITDPESDSV 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIP----PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + + + + ++ + S + P E S V +GF+E SN N + E Sbjct: 177 YLDRLKIVEFENDR-YLSKNGSSFYLDTPLSGRAIAAEGPSRPVVVQGFIEASNVNVVNE 235 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 M +MI + + + + I + M + Sbjct: 236 MVRMIEVNRAYEANQKSIQAEDTMMAKLWNE 266 >gi|322380502|ref|ZP_08054691.1| flagellar basal body rod protein FlgG [Helicobacter suis HS5] gi|321147069|gb|EFX41780.1| flagellar basal body rod protein FlgG [Helicobacter suis HS5] Length = 262 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S L + + T ++N++N +TVGF+ + F+++ S Sbjct: 1 MLRSLYSATTGMLGQQTHIDTTSNNIANVNTVGFKRQRADFNDLFYQALQYAGTSTSDTT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + GS T LD A+ G +F ++ P G TR G F Sbjct: 61 RSPNGIEVGLGVRTASVTKMFSQGSPKETENNLDIAITGKGFFQIQMPDGSTAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ D G++V+ G + I PQ ++G G +S VI + L Sbjct: 121 KIDDQGNMVTTEGYLLI-----PQITFPQDTTQISIGVDGTVSVTQGNASTSNVIGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ ++ P +++GFLE SN + EM +I Sbjct: 176 ANFINPAGLHALGDNLLAVTSASGPAIVGNANSDGYGQLRQGFLELSNVRLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + ++ Sbjct: 236 AQRAYEANSKTIQTAD-NMLQTVNSL 260 >gi|124268252|ref|YP_001022256.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] gi|124261027|gb|ABM96021.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] Length = 260 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N+ T G++ F +++ S Sbjct: 1 MMRSLWISKTGMEAQQTQLDHISHNLANSATNGYKRSHAVFEDLMYQTIRQPGANSSEQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + GS + LD A++G +F ++ P G TRDG F Sbjct: 61 QLPTGLQLGLGTRAVATSRQFSQGSLQQSTNPLDLAVKGQGFFQIQLPDGTTGYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V+ G LV+ +G Y V I IP + +G G +S + + + L Sbjct: 121 QVSAQGQLVTNNG-YVVQPG----ITIPANAQNVTIGADGNVSVTLPGQAAAQTVGQIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + E + P + G + +GF+E SN N + E+ MI Sbjct: 176 ASFVNPAGLEPRGENLYTETAASGTPNAGAPDSNGLGA-IAQGFVEGSNVNVVEELVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYELNSKAIQTSDQMLQKLAQ 259 >gi|238758108|ref|ZP_04619288.1| Flagellar basal-body rod protein flgG [Yersinia aldovae ATCC 35236] gi|238703646|gb|EEP96183.1| Flagellar basal-body rod protein flgG [Yersinia aldovae ATCC 35236] Length = 260 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV++ G I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTSGGF-----QIQPAITIPANALKMTVGRDGIVSVTLPGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 TTFINNSGLESVGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|291280521|ref|YP_003497356.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] gi|290755223|dbj|BAI81600.1| flagellar basal-body rod protein FlgG [Deferribacter desulfuricans SSM1] Length = 254 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 19/256 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + LA ++L +++N++N +T ++ F + + K I Sbjct: 1 MLNGLYTATSGMLAQNRKLEIISNNLANINTTSYKREDAIFRDYLYHDKRTPQDIIKASE 60 Query: 57 ------SFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRDGRFKVT 109 + V+ Y G+ TG D ALE + +FA+E+P GI TRDG F + Sbjct: 61 YNKTINNTVSLDSIYTDFSPGNLRQTGNRFDLALENKNTFFAVETPFGIRFTRDGHFTLD 120 Query: 110 DDGSLVSASGKYPVLD---MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 D LV+ G +PVL + I +P D + E GEI G ++ + + VD Sbjct: 121 KDRRLVNQDG-FPVLSRNFENNEGIILP--DGEVTITENGEIMVDGVILDQLFIAEVDDP 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + + + ++ + V++G+LE SN N + EM MI + F + + Sbjct: 178 SKMQKMGRNLYA--AIGFMPDESTNPGVRQGYLEGSNVNPVKEMVSMIESMRGFETYQKV 235 Query: 227 IDENEKSMLEAIRNIA 242 I ++ ++ +I Sbjct: 236 IQTIDEINSKSSNDIG 251 >gi|114566479|ref|YP_753633.1| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337414|gb|ABI68262.1| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 261 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 106/263 (40%), Gaps = 29/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN------DIDQ 54 M S + A + + T++ NM+N +TVGF+ +++F +++ D ++ Sbjct: 1 MMRSLYTASSGMYAQQLNIDTLSHNMANVNTVGFKKQRLEFQDLLYQTIRRPAADEDRNE 60 Query: 55 KIS-----FVASGKEYLSKEVGSFISTGTELDFALEGDAWF--ALESPRGIILTRDGRFK 107 + V G+ +T LD A+ G A+F + ++ TRDG FK Sbjct: 61 PVGLLVGLGVKPAAINTIFNTGNLQATENPLDVAINGTAFFGVKVAGNDELLYTRDGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLY 161 + +G LV+A G +L+ A + + G+IS + + + L+ Sbjct: 121 IDANGQLVTADGN--LLEGAG---TFDEGAYDIQIASDGKISYMIPGQETPEEAGQLKLF 175 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLED-----LSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + E+ + V+++ G+LE SN + EM +I Sbjct: 176 KFINPAGLQKIGKNLYRATPNSGEAEEWQPDSDNSVSLEAGYLEMSNVQIVEEMVNLITA 235 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + +I +++ + A Sbjct: 236 QRAYEINSKVIISSDEMLQTAAN 258 >gi|88811803|ref|ZP_01127057.1| hypothetical protein NB231_05340 [Nitrococcus mobilis Nb-231] gi|88791194|gb|EAR22307.1| hypothetical protein NB231_05340 [Nitrococcus mobilis Nb-231] Length = 261 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + R+STVA+N++N +T GF+ + KF ++V + S Sbjct: 1 MNPALWVAKTGLDAQQTRMSTVANNLANVNTTGFKKDRAKFEDLVYQTVRQAGGQSSQNN 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + + G+ + TG LD A+ G +F + P G TRDG F Sbjct: 61 RLPSGLMLGTGVRVAATQKMFTQGNIVQTGNALDLAINGRGFFEILQPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ D G +V+A G I IP + +G G +S + + + L Sbjct: 121 QIDDQGQVVTADGL-----PLQPAINIPPNAQSVTIGTDGTVSVQLPGSPAPTQVGNLRL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P TP + G+ V+ G LE SN N E+ MI Sbjct: 176 TDFINPAGLKPIGRNLFVQTGASGAPQPGTPGLNGLGL-VQAGALESSNVNIAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + F + T I ++ + N+ Sbjct: 235 ETQRGFETNTRAIQTADQMLQFITNNL 261 >gi|242309754|ref|ZP_04808909.1| flagellar basal body rod protein FlgG [Helicobacter pullorum MIT 98-5489] gi|239523755|gb|EEQ63621.1| flagellar basal body rod protein FlgG [Helicobacter pullorum MIT 98-5489] Length = 263 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + L + ++ ++N+SN +T G+R + +F+++ + S Sbjct: 1 MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G S G+F T LD A+ G+ +F +E P G TRDG F Sbjct: 61 LSPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ D+G++V++ G V I IP N+G G ++ + + + Sbjct: 121 KLDDEGNVVNSQGYLLV-----PNITIPDDATQVNIGTDGTVTVVQGNETEVNELGQIET 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G ++ ++ N P+ G+ +++GF+E SN + EM +I Sbjct: 176 VNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIV 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ + + Sbjct: 236 GQRAYEANSKSIQTAD-SMLQIVNQL 260 >gi|146311248|ref|YP_001176322.1| flagellar basal body rod protein FlgG [Enterobacter sp. 638] gi|145318124|gb|ABP60271.1| flagellar basal-body rod protein FlgG [Enterobacter sp. 638] Length = 260 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVQLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANSLSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + SG+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGSGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|85712256|ref|ZP_01043307.1| Flagella basal body rod protein [Idiomarina baltica OS145] gi|85693883|gb|EAQ31830.1| Flagella basal body rod protein [Idiomarina baltica OS145] Length = 262 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 117/265 (44%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A ++ +S +++N++N TVGF+ + F +++ N + + Sbjct: 1 MNPALWISKTGLDAQQRDISVISNNLANASTVGFKKSRAIFEDLLYQNINQPGGQSAQDV 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ +T LD + G +F + P G + TR+G+F Sbjct: 61 ELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMINGKGFFQVLMPDGTLSYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 V ++G+LV++ YP+ IQIP+ ++ ++GE++ + VI + L Sbjct: 121 SVNEEGTLVTSGNGYPI----EPQIQIPEDAISLSISQEGEVTVRQPGNAQNAVIGQLNL 176 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 S G + + P E + GV V++G LE SN N E+ +I Sbjct: 177 ASFINPAGLEPIGQNLYKETAVSGAPQESVPGVDGVGNVRQGMLETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML I Sbjct: 237 AQRGYEMNSKVISSVDQ-MLSYINQ 260 >gi|229544402|ref|ZP_04433460.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] gi|229324887|gb|EEN90564.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] Length = 254 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 16/253 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + L T+ +N++N +T G++ +V F + + S Sbjct: 1 MLRSLYSGVSGMKNFQTELDTIGNNIANVNTYGYKKGRVTFKDAISQTLASATPGTSAQQ 60 Query: 58 ---FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 G GS STG LDFA+ GD +F + TR G F D+ L Sbjct: 61 VGLGSQIGSIDTVDTSGSPESTGRPLDFAITGDGYFRVADGNNTYYTRAGNFYFDDNRRL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRE 173 V++ G + VL I + + F+V G I+ Q G I T+ + + G + Sbjct: 121 VNSEG-FTVLGTNGQAITLGANVKSFSVATDGTITDQDGNTIGTISIATFQNPAGLTKVG 179 Query: 174 NSGISPNIPP-------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + + P ++ +G T+K G+LE SN + E+ MI + F + T + Sbjct: 180 GNLYTTTNSNAGTVTVSQPGQNGAG-TIKSGYLEMSNVDLSEELTNMIVAERGFQANTRI 238 Query: 227 IDENEKSMLEAIR 239 I +++ + E + Sbjct: 239 ITTSDEILQELVN 251 >gi|21231395|ref|NP_637312.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768552|ref|YP_243314.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. 8004] gi|188991639|ref|YP_001903649.1| flagellar basal body rod protein FlgG [Xanthomonas campestris pv. campestris str. B100] gi|325916945|ref|ZP_08179189.1| flagellar basal-body rod protein FlgG [Xanthomonas vesicatoria ATCC 35937] gi|21113060|gb|AAM41236.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573884|gb|AAY49294.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Xanthomonas campestris pv. campestris str. 8004] gi|167733399|emb|CAP51600.1| unnamed protein product [Xanthomonas campestris pv. campestris] gi|325536848|gb|EGD08600.1| flagellar basal-body rod protein FlgG [Xanthomonas vesicatoria ATCC 35937] Length = 261 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + R+S +++N++NT+T GF+ + F +++ S Sbjct: 1 MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + GS TG LD + G +F ++ P G TRDG F Sbjct: 61 QLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ G +V+ SG YP+ IQ+P+ + +G G IS + I + L Sbjct: 121 QINAQGEVVTNSG-YPLQPG----IQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P TP + G TV +G LE SN N++ E+ MI Sbjct: 176 TDFINPSGLQAKGENLFVETTASGPAQNGTPGLNGLGTTV-QGALEGSNVNTVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + N+ Sbjct: 235 ETQRAYEMNAKAISTTDSMLGYLNNNV 261 >gi|227112523|ref|ZP_03826179.1| flagellar basal body rod protein FlgG [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 260 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S E G+F TG D A++G +F ++ P G TRDG F Sbjct: 61 MLPSGLQLGTGVRPVSTERIHTQGTFSETGNSKDVAIKGQGFFQVQLPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ +G LV++SG Y V I +P N+G G +S K + I + L Sbjct: 121 QLDGNGQLVTSSG-YQVQPA----ITVPANATELNIGRDGIVSVKVQGQAATNQIGQLTL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + P E G+ + + ++E SN N E+ MI Sbjct: 176 TTFINDSGLESIGENLYLETASSGAPNETNPGLNGAGLLYQKYVETSNVNVAEELVSMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEINSKAISSSDQMLQKLTQ 259 >gi|294828153|ref|NP_712848.2| flagellar basal body rod protein FlgG [Leptospira interrogans serovar Lai str. 56601] gi|293386000|gb|AAN49866.2| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] Length = 264 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 116/266 (43%), Gaps = 35/266 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKISF 58 S +A + + T+++N++N +T GF+ + F ++V + +S Sbjct: 1 MRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVSE 60 Query: 59 VASGKEYLS----------KEVGSFISTGTELDFALEGD-AWFALESPRGI-ILTRDGRF 106 + +G E+GSF +TG +LD A+ G+ +F ++ P G TRDG F Sbjct: 61 IPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQMPDGSFAFTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKD--EIFNVGEKGEISQ------KGKVIATM 158 K+ + +V+++G P+ +P+ + E+GE++ + VI + Sbjct: 121 KIDSNQQVVTSNGYLL-----EPPLILPEGAILNTLMISEQGEVTVKVGADIRPIVIGQV 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY G + +E P IP TP + G V +GFLE SN + EM Sbjct: 176 ELYRFVNPAGLQAIGKNLFQETVASGPEIPGTPGMEGFG-NVLQGFLEMSNVKIVEEMVA 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S + I ++ + AI Sbjct: 235 MIVAQRAYESNSKAIQTSDNMLSTAI 260 >gi|71906393|ref|YP_283980.1| flagellar basal body rod protein FlgG [Dechloromonas aromatica RCB] gi|71846014|gb|AAZ45510.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB] Length = 260 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + +L +++N++N T GF+ + F +++ Sbjct: 1 MIRSLWIARTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTLRQPGAQSSQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V G+ T LD A++G+ +F + P G TRDG F Sbjct: 61 QIPTGLQLGTGVRPVSTAHIFTQGNLQKTDNTLDIAVQGNGFFQILLPDGTTGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + + G +V++ G YP+ I IP +VG G +S I ++ L Sbjct: 121 QKDNQGQIVTSDG-YPLQPN----ITIPSNALSVSVGTDGTVSVTQSGSAATTQIGSIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P TP + +G+ V +G++E SN N E+ MI Sbjct: 176 ATFINPAGLQSAGQNLFLETAASGTPTPNTPGSNGAGI-VNQGYVETSNVNVAEELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + ++ ++ + + Sbjct: 235 QTQRAYELNSKVVSTSDAMLGRLTQ 259 >gi|332161324|ref|YP_004297901.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605244|emb|CBY26742.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica Y11] gi|325665554|gb|ADZ42198.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860604|emb|CBX70901.1| flagellar basal-body rod protein flgG [Yersinia enterocolitica W22703] Length = 260 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G LV++ G I IP VG G +S + + + L Sbjct: 121 QTDQNGQLVTSGGF-----QIQPAITIPANAMSMTVGRDGIVSVTLPGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 ATFINNSGLESVGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|119953549|ref|YP_945759.1| flagellar basal body rod protein FlgG [Borrelia turicatae 91E135] gi|119862320|gb|AAX18088.1| flagellar basal-body rod protein FlgG [Borrelia turicatae 91E135] Length = 264 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ + + Sbjct: 1 MMRALWTAASGMKAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQKRAGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + E G+ +T + D A+EGD ++ + P G TRDG F Sbjct: 61 VSPLGNQVGHGTKVSATHRIFEQGNLQATNLKTDVAIEGDGFYKILLPDGTYGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQ------IPQKDEIFNVGEKGEISQKGKVIATMGL 160 K+ +G LV++ G Y +L S P + I ++ I +V G S + M + Sbjct: 121 KIDANGDLVTSQG-YKLLPEISFPEEYIKDSIIISQEGIISVKVDG--SPDPIELGQMEI 177 Query: 161 YSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ G I TP G +++G LE SN + EM MI Sbjct: 178 ARFVNPAGLNAIGNNIFKETIGSGEEISGTPGSSGMG-RLRQGILEMSNVSIAEEMVTMI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ +ML N+ Sbjct: 237 VAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|261339378|ref|ZP_05967236.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] gi|288318179|gb|EFC57117.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] Length = 260 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQIQLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGTPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|51596013|ref|YP_070204.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 32953] gi|153947499|ref|YP_001401288.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|170024645|ref|YP_001721150.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis YPIII] gi|51589295|emb|CAH20916.1| flagellar basal-body rod protein FlgG (distal rod protein) [Yersinia pseudotuberculosis IP 32953] gi|152958994|gb|ABS46455.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|169751179|gb|ACA68697.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis YPIII] Length = 260 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+A G + V I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 TTFINNSGLESVGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLAQ 259 >gi|238751764|ref|ZP_04613252.1| Flagellar basal-body rod protein flgG [Yersinia rohdei ATCC 43380] gi|238710035|gb|EEQ02265.1| Flagellar basal-body rod protein flgG [Yersinia rohdei ATCC 43380] Length = 260 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSKTDNSKDIAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV++ G + V I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTS-GGFQVQPA----ITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 TTFINNSGLESMGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|223040682|ref|ZP_03610951.1| flagellar basal-body rod protein FlgG [Campylobacter rectus RM3267] gi|222878046|gb|EEF13158.1| flagellar basal-body rod protein FlgG [Campylobacter rectus RM3267] Length = 262 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 108/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +A + ++ + N++N +T+G++ + +F++++ + S Sbjct: 1 MMRSIYSAATGMIAQQTQIDVTSHNIANVNTIGYKKNRAEFADLMYQVMEYAGTATSATT 60 Query: 61 SGKEYL-------------SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G F T LD + G+ +F ++ P G TR+G F Sbjct: 61 KSPTGIEVGLGARPTAITKIFSQGYFKETSNNLDMVIAGNGFFQVQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ +G++V++ G VL + IP +VG G +S + + + L Sbjct: 121 KLNSEGTVVNSDGY--VL---QPQMTIPADATQISVGTDGTVSVLQPGNTEMAQVGRIEL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ P + T D G T+++GF+E SN + EM +I Sbjct: 176 ANFINPAGLHSMGDNLYLPTGSSGEVVVGTAGLDGLG-TIRQGFVEMSNVQLVEEMTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML + ++ Sbjct: 235 TGQRAYEANSKAITTSDD-MLSIVNSL 260 >gi|50120641|ref|YP_049808.1| flagellar basal body rod protein FlgG [Pectobacterium atrosepticum SCRI1043] gi|49611167|emb|CAG74613.1| flagellar basal-body rod protein [Pectobacterium atrosepticum SCRI1043] Length = 260 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S E G+F TG D A++G +F ++ P G TRDG F Sbjct: 61 MLPSGLQLGTGVRPVSTERIHTQGTFSETGNSKDVAIKGQGFFQVQLPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ +G LV++SG Y V I +P N+G G +S K + I + L Sbjct: 121 QLDGNGQLVTSSG-YQVQPA----ITVPANATELNIGRDGIVSVKVQGQAATNQIGQLTL 175 Query: 161 YSVDMSQGFVRR-ENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + P E G+ + + ++E SN N E+ MI Sbjct: 176 TTFINDSGLESMGENLYLETASSGAPNETNPGLNGAGLLYQKYVETSNVNVAEELVSMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEINSKAISSSDQMLQKLTQ 259 >gi|126463747|ref|YP_001044861.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides ATCC 17029] gi|126105411|gb|ABN78089.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 239 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + + +VA+N++N T GFR + F+E V ++ + ++ + Sbjct: 1 MDAAGYTTLTRQSGLMREMQSVANNIANISTTGFRREGIVFTEHVKRLEGEASLSMASAS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + + G TG DFA+ G+ +F +E+P+G LTR G F +G LV A G Sbjct: 61 ARQ--IDLTQGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +LD + P+ IP + G +S + I +GL+ G + S Sbjct: 119 -RLLDAGAAPLFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRHEGGTRFSAE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E G T+ +G LEDSN + E+ +MI + + + + +D + + +R Sbjct: 178 GGTEPAE---GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234 Query: 241 IA 242 + Sbjct: 235 LG 236 >gi|238794000|ref|ZP_04637618.1| Flagellar basal-body rod protein flgG [Yersinia intermedia ATCC 29909] gi|238726632|gb|EEQ18168.1| Flagellar basal-body rod protein flgG [Yersinia intermedia ATCC 29909] Length = 260 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSKTDNTKDIAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV++ G + V I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTS-GGFQVQPA----ITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 TTFINNSGLESIGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|227328340|ref|ZP_03832364.1| flagellar basal body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253688970|ref|YP_003018160.1| flagellar basal-body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755548|gb|ACT13624.1| flagellar basal-body rod protein FlgG [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 260 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S E G+F TG D A++G +F ++ P G TRDG F Sbjct: 61 MLPSGLQLGTGVRPVSTERIHTQGTFSETGNSKDVAIKGQGFFQVQLPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ +G LV++SG Y V I +P N+G G +S K + I + L Sbjct: 121 QLDGNGQLVTSSG-YQVQPA----ITVPANATELNIGRDGIVSVKVQGQAATNQIGQLTL 175 Query: 161 YSVDMSQGFVRR-ENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + P E G+ + + ++E SN N E+ MI Sbjct: 176 TTFINDSGLESMGENLYLETASSGAPNETNPGLNGAGLLYQKYVETSNVNVAEELVSMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEINSKAISSSDQMLQKLTQ 259 >gi|307945665|ref|ZP_07661001.1| flagellar basal-body rod protein FlgF [Roseibium sp. TrichSKD4] gi|307771538|gb|EFO30763.1| flagellar basal-body rod protein FlgF [Roseibium sp. TrichSKD4] Length = 246 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 12/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----NDIDQK 55 M+ + I L+ Q AL +L+ VA+NM+N +T GF+ ++ F E V + N D Sbjct: 1 MENAQLIALSRQSALRNQLNVVANNMANINTGGFKAQRLLFEEYVMPVAEATEFNRRDHD 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 + +V GS TG ELD A+EGD +F +++ G TR+G F + + G L Sbjct: 61 LFYVQDYGTRTEFMPGSIKLTGNELDIAIEGDGFFVVQTADGGEAYTRNGGFTLDEAGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V+ + PVL PI D ++ G IS + V + + + D Q V+ + Sbjct: 121 VTPN-DKPVLTEGG-PINFTTADGKIDISRDGTISTELGVRGRIRVVNFDNPQNLVQMGD 178 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + + V V +G +E SN + E+ ++I +T+ + +++ +I + ++ Sbjct: 179 NLF----QGENAIPNAKVRVTQGAIEQSNVEGVVEVTRLIEITRAYTTVSKMIKDADELR 234 Query: 235 LEAIRNIA 242 +AI + Sbjct: 235 QKAISTLG 242 >gi|218135323|ref|ZP_03464127.1| hypothetical protein BACPEC_03228 [Bacteroides pectinophilus ATCC 43243] gi|217990708|gb|EEC56719.1| hypothetical protein BACPEC_03228 [Bacteroides pectinophilus ATCC 43243] Length = 256 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 21/256 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV---------GAI 48 M + + RL V++N++N T ++ + F EV+ G + Sbjct: 1 MVKGLYTAYTGLVNQQNRLDVVSNNLANAATTAYKKEGLTSQSFDEVMAYKVKDASVGTV 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRD 103 I V G+ Y GSF TG D AL GD +F++ + TRD Sbjct: 61 NQYIGDLNLGVKIGESYRDYSQGSFRETGENFDLALSGDGFFSISFTNKAGETSTMYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F +T DG LV+ G + VL PIQ+P + G I+ G I + + Sbjct: 121 GNFSMTKDGYLVTKDGDF-VLGEGG-PIQLPTDAAKIAIDRDGTITADGVQIDKLAITDF 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + ++ + + + +D +G V +G+LE SN N + EM +MI +++ F + Sbjct: 179 ED-YNYLEQYGENLYRALDTATTKDAAG-QVYQGYLEQSNVNVVSEMVEMITISRAFEAN 236 Query: 224 TTLIDENEKSMLEAIR 239 ++ + ++ +A+ Sbjct: 237 QKAMNAADDTLKKAVT 252 >gi|261821155|ref|YP_003259261.1| flagellar basal body rod protein FlgG [Pectobacterium wasabiae WPP163] gi|261605168|gb|ACX87654.1| flagellar basal-body rod protein FlgG [Pectobacterium wasabiae WPP163] Length = 260 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S E G+F TG D A++G +F ++ P G TRDG F Sbjct: 61 MLPSGLQLGTGVRPVSTERIHTQGTFSETGNSKDVAIKGQGFFQVQLPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ +G LV++SG Y V I +P N+G G +S K + I + L Sbjct: 121 QLDGNGQLVTSSG-YQVQPA----ITVPANATELNIGRDGIVSVKLQGQAATNQIGQLTL 175 Query: 161 YSVDMSQGFVRR-ENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + P E G+ + + ++E SN N E+ MI Sbjct: 176 TTFINDSGLESMGENLYLETASSGAPNESNPGLNGAGLLFQKYVETSNVNVAEELVSMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEINSKAISSSDQMLQKLTQ 259 >gi|167909129|ref|ZP_02496220.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 112] Length = 262 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 102/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLQQTGNSKDVAINGPGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG + I IPQ +G G +S I + + Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITIPQNANSLTIGSDGVVSVTQPGSNNAVQIGALQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+K+G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETTSSGAPNVSQPGLNGAG-TLKQGYVESSNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQM 260 >gi|300870897|ref|YP_003785768.1| flagellar hook-basal body complex protein FlhO [Brachyspira pilosicoli 95/1000] gi|300688596|gb|ADK31267.1| flagellar hook-basal body complex protein, FlhO [Brachyspira pilosicoli 95/1000] Length = 282 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGAIKND------ 51 M G + +A + RL VA+N++N D GF+ F E++ A D Sbjct: 1 MVRGVYTGASGMIAEQYRLDVVANNLANVDKPGFKRDTATFKAFPEMMAARTEDDGVVIF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + + E GS TG +LD AL +FA+E+P G T Sbjct: 61 PLGSTDIRPYVGRLGTGVEVNEVFTEWEQGSLRETGNQLDIALGDKGFFAVETPHGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + D LV+ G Y V+ IQI K FN+ E+G IS Sbjct: 121 RNGSFLIDKDNYLVTKHG-YKVMGENGY-IQI--KSNNFNIDEEGRISINRRYQDNEDFV 176 Query: 150 -------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----EDLSGVTVKRGF 198 + +++ T+ + + + + S P + + V F Sbjct: 177 QFNDNEWEDEEILDTLKIVRFENERYLKKEGESFWVDTDISGPAYIAQKGVDRPKVLSRF 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N + EM +MI + + + + I ++ + + + Sbjct: 237 LEMSNVNPINEMVRMIEVQRAYELNSKTISTHDTLIGRVVNEVG 280 >gi|291617022|ref|YP_003519764.1| FlgG [Pantoea ananatis LMG 20103] gi|291152052|gb|ADD76636.1| FlgG [Pantoea ananatis LMG 20103] gi|327393473|dbj|BAK10895.1| flagellar basal-body rod protein FlgG [Pantoea ananatis AJ13355] Length = 260 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQMNMDVIANNLANVSTNGFKRSRAVFEDLMYQTMRQPGTQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A+ G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVTTERLHTQGNLSQTNNSKDIAINGQGFFQIQMPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V +G LV+ SG +PV I IP V G +S + + + L Sbjct: 121 QVDQNGQLVTNSG-FPVQPG----ITIPANATSITVSRDGVVSVTQQGQTQAAQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E TP ++ +G+ + +G+ E SN N E+ MI Sbjct: 176 STFMNNAGLDSVGENLYKETQASGAPTDSTPGQNGAGL-LYQGYAETSNVNVAEELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEINSKAISTSDQMLAKLTQ 259 >gi|270262399|ref|ZP_06190670.1| flagellar basal-body rod protein FlgG [Serratia odorifera 4Rx13] gi|270043083|gb|EFA16176.1| flagellar basal-body rod protein FlgG [Serratia odorifera 4Rx13] Length = 260 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSQAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G LV+ASG I IP VG G +S + + + L Sbjct: 121 QIDQNGQLVTASGFQV-----QPAITIPANALSITVGRDGIVSVTQQGQTAAQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFINDSGLESVGENLYQETESSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|296126376|ref|YP_003633628.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] gi|296018192|gb|ADG71429.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] Length = 282 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 114/284 (40%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGAIKND------ 51 M G + +A + RL VA+N++N D GF+ V F E++ A D Sbjct: 1 MVRGVYTGASGMMAEQARLDVVANNLANVDKPGFKRDTVSFKSFPEMMAARTEDDGVVIF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + + E GS TG +LD AL +FA+E+P G T Sbjct: 61 PLGSTDVRPYVGRMGTGVEVNEVFTEWEQGSLRETGNQLDIALGDKGFFAVETPHGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKG---- 152 R+G F + D LV+ G Y V+ IQI K FN+ E+G +S Q G Sbjct: 121 RNGSFLIDKDHYLVTKHG-YKVMGENGY-IQI--KTNNFNIDEEGRVSINRRYQDGNTFV 176 Query: 153 ----------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----EDLSGVTVKRGF 198 +++ T+ + D + + S P + + V F Sbjct: 177 QFNDNEWEDEEILDTLKIVRFDNERYLKKEGESFWVDTDISGPAYIAQKGVDRPKVLSRF 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N + EM +MI + + + + I ++ + I + Sbjct: 237 LEMSNVNPVNEMVRMIEVQRAYELNSKTISTHDTLVGRVINEVG 280 >gi|221199741|ref|ZP_03572784.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2M] gi|221208654|ref|ZP_03581654.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2] gi|221171465|gb|EEE03912.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2] gi|221179980|gb|EEE12384.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD2M] Length = 262 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLTQTGNSKDVAINGSGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y +L I +PQ +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQILPA----ITVPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLEAKGENLFAETTSSGAPNVSQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|218689031|ref|YP_002397243.1| flagellar basal body rod protein FlgG [Escherichia coli ED1a] gi|218426595|emb|CAR07423.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli ED1a] Length = 260 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVEMSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|261419427|ref|YP_003253109.1| flagellar basal body rod protein FlgG [Geobacillus sp. Y412MC61] gi|319766242|ref|YP_004131743.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261375884|gb|ACX78627.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317111108|gb|ADU93600.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 265 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 108/263 (41%), Gaps = 25/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G+ A + +L + +N++N +T GF+ + F +++ G Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 V G + GS +TG LD A+ GD +F + G + TR G F Sbjct: 61 GTNPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFVVGDASGNNRMYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLY 161 + G +V+ G+Y +L + + +Q+P + ++G G+++ I T+ L Sbjct: 121 YLDSQGYIVNVDGQY-LLGVGNSRLQVPTDAKSLSIGADGKVTIVDASGTLSTIGTIQLA 179 Query: 162 SVDMSQGFVRRENSGISPNI-PPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHL 216 + G + N+ TP G T+ G LE SN + E +MI Sbjct: 180 KFANNDGLEKAGNNLFRETTNSGTPTTGAPGANGTGTIVSGALEMSNVDLAEEFTEMIVA 239 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F + T +I +++ + E + Sbjct: 240 QRGFQANTRIITTSDEILQELVN 262 >gi|189426330|ref|YP_001953507.1| flagellar basal body rod protein FlgG [Geobacter lovleyi SZ] gi|189422589|gb|ACD96987.1| flagellar basal-body rod protein FlgG [Geobacter lovleyi SZ] Length = 262 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 110/267 (41%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + Q ++ +A+N++N +T GF+ + F +++ + + A Sbjct: 1 MMRSLWTAASGMNTQTQNINVIANNLANVNTTGFKKSRADFQDLMYQTVQNPGSPSTNAA 60 Query: 61 SGKEYLSKEVGS-------------FISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +GS F +TG +LD A+EGD +F ++ P G +R G F Sbjct: 61 QIPVGIQFGMGSKLAAVSKQFTPGDFSNTGGQLDMAIEGDGFFQIQMPDGSTAYSRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ +G +V+ G YP+L I IP +G G +S + + + Sbjct: 121 KMDSNGRVVTPEG-YPMLPE----IVIPNNSTKITIGTDGTVSAVQSGQSTASTVGNIQI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ TP + G T+ +GFLE SN + EM MI Sbjct: 176 ANFTNPAGLSSMGKNFYQQTDASGNATTGTPGQTGLG-TITQGFLEMSNVDVATEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I +++ ML+ N+ Sbjct: 235 IGQRAYEANSKAITTSDE-MLQLANNL 260 >gi|260597447|ref|YP_003210018.1| flagellar basal body rod protein FlgG [Cronobacter turicensis z3032] gi|260216624|emb|CBA29921.1| Flagellar basal-body rod protein flgG [Cronobacter turicensis z3032] Length = 260 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITVGRDGVVSVTQQGTAAPVQVGQINL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDSGLESIGENLYTETQSSGTPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|226944494|ref|YP_002799567.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] gi|226719421|gb|ACO78592.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] Length = 260 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 105/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + + ++ +A+N++N T GF+ + F +++ + Sbjct: 1 MIRSLWTAKTGLESQQVQMDVIANNLANVATNGFKRTRAVFEDLLYQNLRQPGADNTTQT 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A+ G +F +E P G TRDG F Sbjct: 61 KLPSGLQIGTGVRPVATERLHSQGNLQGTENSNDLAINGKGFFQVELPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ ++G +V++SG + I IP+ V + G +S + + + L Sbjct: 121 QLDENGQMVTSSGYLLMGG-----ITIPENALSVTVSQDGIVSVTQPGNAQANQVGQLNL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G EN + P E++ G + +G++E SN N + EM MI Sbjct: 176 ALFINPAGLQSVGENLYLETASSGAPNENIPGTNGAGRLYQGYVETSNVNVVEEMVSMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + ++ +++ + + Sbjct: 236 TQRAYEINSKAVETSDEMLARLTQ 259 >gi|307627452|gb|ADN71756.1| flagellar basal body rod protein FlgG [Escherichia coli UM146] Length = 260 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSCAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|197104382|ref|YP_002129759.1| flagellar basal-body rod protein FlgF [Phenylobacterium zucineum HLK1] gi|196477802|gb|ACG77330.1| flagellar basal-body rod protein FlgF [Phenylobacterium zucineum HLK1] Length = 245 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 114/244 (46%), Gaps = 4/244 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE--VVGAIKNDIDQKISF 58 M + +GL+ Q+ L + + +A+N++N DT GF+ + A+ + + F Sbjct: 1 MDNALYVGLSQQMVLRREMEIIANNIANLDTTGFKVESLMQKTDARAPAMTLGGPKPVKF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + G+ T ELDFA+EG +F L+ P G TRDGRF+ + G LV+ + Sbjct: 61 VTADGVARDFGQGALRRTDGELDFAIEGQGFFRLQGPDGERFTRDGRFRTDEIGRLVAQN 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G PV+D I I + +V G +SQ + I +G+++ + + ++ Sbjct: 121 GS-PVMDEGGGEIVIDPEKGQVSVSADGVVSQGAERIGKIGMFTFETLAALEKTGDNQYR 179 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P + + +++G LE SN ++ E+ +M+ +++ + +ID ++ Sbjct: 180 NTANLLP-QPAAEARLRQGMLEGSNVQAILEITRMVEVSRAYERTNRMIDSEADLSRRSV 238 Query: 239 RNIA 242 + Sbjct: 239 ERLG 242 >gi|75675315|ref|YP_317736.1| flagellar basal body rod protein FlgF [Nitrobacter winogradskyi Nb-255] gi|74420185|gb|ABA04384.1| Flagellar basal body rod protein [Nitrobacter winogradskyi Nb-255] Length = 255 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 15/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + IGL+ Q+ LE+++ +A+N++N T G++ F+E + + D++ Sbjct: 1 MENTLLIGLSRQMMLERQMDVIANNVANVTTNGYKADHSLFNEYLMPGAHEDNFVGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV + G T LD A++G+A+ +++P G TRDG ++ G LV Sbjct: 61 LSFVQDRATFHDFAGGPTEQTKNPLDVAIDGNAFLVVQTPNGERYTRDGGLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLYSVDMSQG 168 +A G +PVL PI+ Q D + + G ++ + + L S Q Sbjct: 121 TA-GGHPVLGSNG-PIRFQQTDRNITISDDGTVTVIEGINNATNAIRGRLRLVSFPQVQR 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 V+ E S + + + +GF+E SN N++ EM +++ +++ + + TL+ Sbjct: 179 LVK-EGSNLYAAGEGNFARQDTQARINQGFIERSNVNAVTEMSRLVEVSRAYTQMATLLQ 237 Query: 229 ENEKSMLEAIRNIA 242 + AI +A Sbjct: 238 QQSDLQRSAIEKLA 251 >gi|53717916|ref|YP_106902.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei K96243] gi|53724567|ref|YP_104800.1| flagellar basal body rod protein FlgG [Burkholderia mallei ATCC 23344] gi|67641540|ref|ZP_00440317.1| flagellar basal-body rod protein FlgG [Burkholderia mallei GB8 horse 4] gi|76808723|ref|YP_331881.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 1710b] gi|121598854|ref|YP_994293.1| flagellar basal body rod protein FlgG [Burkholderia mallei SAVP1] gi|124386502|ref|YP_001028058.1| flagellar basal body rod protein FlgG [Burkholderia mallei NCTC 10229] gi|126439033|ref|YP_001057324.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 668] gi|126450732|ref|YP_001082865.1| flagellar basal body rod protein FlgG [Burkholderia mallei NCTC 10247] gi|126454438|ref|YP_001064566.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 1106a] gi|134283616|ref|ZP_01770315.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|167001539|ref|ZP_02267334.1| flagellar basal-body rod protein FlgG [Burkholderia mallei PRL-20] gi|167717662|ref|ZP_02400898.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei DM98] gi|167736705|ref|ZP_02409479.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 14] gi|167813804|ref|ZP_02445484.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 91] gi|167822320|ref|ZP_02453791.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 9] gi|167843910|ref|ZP_02469418.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei B7210] gi|167892412|ref|ZP_02479814.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 7894] gi|167900910|ref|ZP_02488115.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei NCTC 13177] gi|167917166|ref|ZP_02504257.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei BCC215] gi|217425015|ref|ZP_03456511.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 576] gi|226199816|ref|ZP_03795367.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei Pakistan 9] gi|237810463|ref|YP_002894914.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei MSHR346] gi|242317698|ref|ZP_04816714.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106b] gi|254175110|ref|ZP_04881771.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 10399] gi|254182138|ref|ZP_04888735.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|254196575|ref|ZP_04902999.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei S13] gi|254201898|ref|ZP_04908262.1| flagellar basal-body rod protein FlgG [Burkholderia mallei FMH] gi|254207232|ref|ZP_04913583.1| flagellar basal-body rod protein FlgG [Burkholderia mallei JHU] gi|254261052|ref|ZP_04952106.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710a] gi|254295816|ref|ZP_04963273.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|254359734|ref|ZP_04976005.1| flagellar basal-body rod protein FlgG [Burkholderia mallei 2002721280] gi|52208330|emb|CAH34263.1| flagellar basal-body rod protein [Burkholderia pseudomallei K96243] gi|52427990|gb|AAU48583.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 23344] gi|76578176|gb|ABA47651.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710b] gi|121227664|gb|ABM50182.1| flagellar basal-body rod protein FlgG [Burkholderia mallei SAVP1] gi|124294522|gb|ABN03791.1| flagellar basal-body rod protein FlgG [Burkholderia mallei NCTC 10229] gi|126218526|gb|ABN82032.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 668] gi|126228080|gb|ABN91620.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106a] gi|126243602|gb|ABO06695.1| flagellar basal-body rod protein FlgG [Burkholderia mallei NCTC 10247] gi|134245025|gb|EBA45120.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|147747792|gb|EDK54868.1| flagellar basal-body rod protein FlgG [Burkholderia mallei FMH] gi|147752774|gb|EDK59840.1| flagellar basal-body rod protein FlgG [Burkholderia mallei JHU] gi|148028948|gb|EDK86880.1| flagellar basal-body rod protein FlgG [Burkholderia mallei 2002721280] gi|157806194|gb|EDO83364.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|160696155|gb|EDP86125.1| flagellar basal-body rod protein FlgG [Burkholderia mallei ATCC 10399] gi|169653318|gb|EDS86011.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei S13] gi|184212676|gb|EDU09719.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|217392035|gb|EEC32061.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 576] gi|225928167|gb|EEH24203.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei Pakistan 9] gi|237504504|gb|ACQ96822.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei MSHR346] gi|238522491|gb|EEP85935.1| flagellar basal-body rod protein FlgG [Burkholderia mallei GB8 horse 4] gi|242140937|gb|EES27339.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1106b] gi|243062740|gb|EES44926.1| flagellar basal-body rod protein FlgG [Burkholderia mallei PRL-20] gi|254219741|gb|EET09125.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1710a] Length = 262 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 102/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLQQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG + I IPQ +G G +S I + + Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITIPQNANSLTIGSDGVVSVTQPGSNNAVQIGALQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+K+G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETTSSGAPNVSQPGLNGAG-TLKQGYVESSNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQM 260 >gi|283833628|ref|ZP_06353369.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] gi|291071311|gb|EFE09420.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] Length = 260 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGIVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|259418017|ref|ZP_05741936.1| flagellar basal-body rod protein FlgF [Silicibacter sp. TrichCH4B] gi|259346923|gb|EEW58737.1| flagellar basal-body rod protein FlgF [Silicibacter sp. TrichCH4B] Length = 238 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ Q L + VA+N++N+ T G+R+ + FSE V + + +S Sbjct: 1 MGSIGYTTLSRQSGLLNEMQAVANNIANSATTGYRSEGLIFSEYVKSAPGQ--ESLSMGR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S E G+ T D A+EGD +F +E+P G LTR G F +G LV+A G Sbjct: 59 ANIRNTSLEQGTMSQTNGSFDLAIEGDGFFMVETPAGNRLTRAGNFTPNAEGDLVTADG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ +P E + G G +S G+ + +GL+ D +R + Sbjct: 118 YRVLDAGQAPMFVPGDAESISFGADGTLSADGQQLGQIGLFVPDEEAQILREDGVMFRVE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E G V +GFLE SN N+++++ +MI + + + + +D +K + AI N Sbjct: 178 GETLPAE---GAQVLQGFLEGSNVNTIHQLARMIEVQRAYEMGQSFLDNEDKRIRAAIDN 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|221640826|ref|YP_002527088.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides KD131] gi|221161607|gb|ACM02587.1| Hypothetical Protein RSKD131_2727 [Rhodobacter sphaeroides KD131] Length = 239 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + + +VA+N++N T GFR + F+E V ++ + ++ + Sbjct: 1 MDAAGYTTLTRQSGLMREMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASAS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + + G TG DFA+ G+ +F +E+P+G LTR G F +G LV + G Sbjct: 61 ARQ--IDLTQGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDSDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +LD + P+ IP + G +S + I +GL+ G + S Sbjct: 119 -RLLDAGAAPLFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRHEGGTRFSAE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E G T+ +G LEDSN + E+ +MI + + + + +D + + +R Sbjct: 178 GGTEPAE---GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234 Query: 241 IA 242 + Sbjct: 235 LG 236 >gi|186895116|ref|YP_001872228.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] gi|186698142|gb|ACC88771.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] Length = 260 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 107/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+A G + V I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSMTVGRDGIVSVTLQGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 TIFINNSGLESVGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLAQ 259 >gi|260429533|ref|ZP_05783510.1| flagellar basal-body rod protein FlgF [Citreicella sp. SE45] gi|260420156|gb|EEX13409.1| flagellar basal-body rod protein FlgF [Citreicella sp. SE45] Length = 237 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ QL L + + +A+N++N T G+R V FSE V D ++ A Sbjct: 1 MSITEYTTLSRQLGLSREMQMIANNIANAATTGYRQQGVVFSEYVRQ--TDDSGSVAMSA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S E G+ TG +LD A+EGD +F +++P G LTR+G F V+ G LV+ G Sbjct: 59 AHVRNTSFEQGALTRTGGQLDLAIEGDGFFLIQTPGGERLTRNGAFAVSAQGDLVTQDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ +P + G +S KG I +G+ VR + Sbjct: 118 YAVLDAGGAPVFVPPDASDLAFAQDGTMSSKGTPIGQVGIVQPVDQGAMVREGGVMFRAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E V +GF+E+SN + + ++ +MI + + + + + ++ + AI++ Sbjct: 178 AGYEPAE---TPRVMQGFVENSNVDPILQIARMIEVQRAYEMGQSFLQREDERVRAAIKS 234 Query: 241 I 241 + Sbjct: 235 M 235 >gi|309779449|ref|ZP_07674210.1| flagellar basal-body rod protein FlgG [Ralstonia sp. 5_7_47FAA] gi|308921690|gb|EFP67326.1| flagellar basal-body rod protein FlgG [Ralstonia sp. 5_7_47FAA] Length = 260 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 105/263 (39%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L +++N++N +T GF+ + F +++ + + S Sbjct: 1 MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ TG D A+ G+ +F ++ P G TRDG F Sbjct: 61 TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK------GEISQKGKVIATMGL 160 ++ G LV++SG YPV + +PQ +G+ + + T L Sbjct: 121 QINAQGQLVTSSG-YPVQPA----VTVPQNATSLTIGKDGVVTVTTPGTVNNTQVGTFQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + G + + ++E SN N + EM MI Sbjct: 176 ANFINPAGLRSMGENLYAETEASGTANLANPGSNGVGA-LNQNYVETSNVNVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + + +++ + + Sbjct: 235 QTQRAYEINSKSVQTSDQMLEKL 257 >gi|219684370|ref|ZP_03539314.1| flagellar hook-basal body complex protein [Borrelia garinii PBr] gi|219672359|gb|EED29412.1| flagellar hook-basal body complex protein [Borrelia garinii PBr] Length = 282 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 111/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A +L V++N++N D VG++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERHKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +T LD AL +F +++ G T Sbjct: 61 PKGHLETAPIVGKLGTGVEENEIYTLFEQGPLKTTSNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G+I Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQIFHNSSFESNPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ G Sbjct: 177 VSEHENSWENYELLDTIRIVNFENPRFLKKQGNSLWVDTKTSGKAQEIDISLRPKIETGA 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|156934438|ref|YP_001438354.1| flagellar basal body rod protein FlgG [Cronobacter sakazakii ATCC BAA-894] gi|156532692|gb|ABU77518.1| hypothetical protein ESA_02269 [Cronobacter sakazakii ATCC BAA-894] Length = 260 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHTQGNLSQTNNSKDVAIKGQGFFQVLLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITVGRDGVVSVTQQGTAAPVQVGQINL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDSGLESIGENLYTETQSSGTPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|238799109|ref|ZP_04642565.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] gi|238717056|gb|EEQ08916.1| Flagellar basal-body rod protein flgG [Yersinia mollaretii ATCC 43969] Length = 260 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSKTDNTKDIAIKGEGFFQVQMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV++ G + V I +P VG G +S + + + L Sbjct: 121 QVDQNGQLVTS-GGFQVQPA----ITVPANALSMTVGRDGIVSVTLQGQTATQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 176 TTFINNSGLESIGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|293395585|ref|ZP_06639868.1| flagellar basal-body rod protein FlgG [Serratia odorifera DSM 4582] gi|291421904|gb|EFE95150.1| flagellar basal-body rod protein FlgG [Serratia odorifera DSM 4582] Length = 260 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGYFQVMLPDGSQAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G LV+ASG I IP VG G +S + + + L Sbjct: 121 QIDQNGQLVTASGFQV-----QPAITIPANALSITVGRDGIVSVTQQGQTAAQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFINDSGLESVGENLYQETESSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + +++ + + + Sbjct: 235 QVQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|152980126|ref|YP_001353113.1| FlgG flagellar basal body rod protein [Janthinobacterium sp. Marseille] gi|151280203|gb|ABR88613.1| FlgG flagellar basal body rod protein [Janthinobacterium sp. Marseille] Length = 260 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 100/264 (37%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTSGFKRSRAVFEDLLYQNIRQPGAASSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ T D A+ GD +F + P G TRDG F Sbjct: 61 QLPSGLQIGTGVRPVATERIHTQGNLQLTSNSKDMAILGDGFFQVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + + G +V++SG I IP ++ G +S + + + Sbjct: 121 QTDNQGQMVTSSGF-----PIQPAIVIPANATAISISRDGIVSVTVPGTTAQTEVGALQV 175 Query: 161 YSVDMSQGFV-RRENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G + EN + P + G V++ ++E SN N + EM MI Sbjct: 176 ATFINPAGLESKGENLYVETTASGNPTTNNPGTNGAGYVQQNYVETSNVNVVEEMVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 236 TQRAYEINSKAISTSDQMLQRLTQ 259 >gi|170742326|ref|YP_001770981.1| flagellar basal body rod protein FlgF [Methylobacterium sp. 4-46] gi|168196600|gb|ACA18547.1| flagellar basal body rod protein [Methylobacterium sp. 4-46] Length = 248 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 MQ + IGL+AQ+AL + L +A+NM+N T GF+ F E + D++ Sbjct: 1 MQNAQLIGLSAQMALGRELEVIANNMANVSTTGFKGRTTHFQEYLMPKARAETFRMPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G STG L+ A+ GDA+FA+++P+G TR+G F++ G LV Sbjct: 61 LSYVIDAGTPLDLAQGPIESTGNPLNAAIRGDAFFAVQTPQGERYTRNGAFELNAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G VL PIQI ++ +G G +S + L + + + Sbjct: 121 TSDGNL-VLGEGG-PIQINPQETGLAIGADGTVSTSQGNRGRIRLVAFADPRQLTNAGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + + PP P ++ G LE SN + + M +M+ + + + + I + Sbjct: 179 LYAASAPPRPA--GPLARIEPGALERSNVSPVLTMTRMMEVNRVYALVADTIARMDSLRG 236 Query: 236 EAIRNIA 242 AI+ +A Sbjct: 237 SAIQRLA 243 >gi|332559803|ref|ZP_08414125.1| FlgF2 [Rhodobacter sphaeroides WS8N] gi|332277515|gb|EGJ22830.1| FlgF2 [Rhodobacter sphaeroides WS8N] Length = 239 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + + +VA+N++N T GFR + F+E V ++ + ++ + Sbjct: 1 MDAAGYTTLTRQSGLMREMQSVANNIANLSTTGFRREGIVFTEHVKRLEGEASLSMASAS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + + G TG DFA+ G+ +F +E+P+G LTR G F +G LV A G Sbjct: 61 ARQ--IDLTQGGLTRTGAPFDFAIMGEGFFLIETPQGQELTRAGSFTPNAEGELVDADGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +LD + P+ IP + G +S + I +GL+ G + S Sbjct: 119 -RLLDAGAAPLFIPPDARGVVLSADGTLSAGDQPIGRVGLWQPTDPLGLRHEGGTRFSAE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E G T+ +G LEDSN + E+ +MI + + + + +D + + +R Sbjct: 178 GGTEPAE---GATLVQGALEDSNVEPVSEIARMIDVQRAYEMGQSFLDREDDRIRTTVRT 234 Query: 241 IA 242 + Sbjct: 235 LG 236 >gi|260222470|emb|CBA32066.1| Flagellar basal-body rod protein flgG [Curvibacter putative symbiont of Hydra magnipapillata] Length = 260 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 30/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L +++N++N T GF+ F +++ + S Sbjct: 1 MINSLWISKTGMEAQQMQLDVISNNLANVSTNGFKKSHAVFEDLMYQNLRQVGSNTSEQS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + S G+ + LD A++G+ +F + P G TRDG F Sbjct: 61 TLPTGLQLGLGVRTVATSRSFSQGNLQQSSNNLDVAIQGNGFFQVTMPDGTTGYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ + G LV+++G P+L+ I IP + + G ++ + I T+ L Sbjct: 121 QIDNAGRLVTSNG-LPILNG----INIPANATSVAIAQDGAVTAMVPGNVAPQPIGTITL 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 S G + N P +G T+ +GF+E SN N + E+ MI Sbjct: 176 ASFINPAGLEPKGQNIYAESTASGQPNAGTAGANGLGTLAQGFVETSNVNVVQELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 236 TQRAYEMNSKAIQTSDQMLQKL 257 >gi|146278638|ref|YP_001168797.1| flagellar basal body rod protein FlgF [Rhodobacter sphaeroides ATCC 17025] gi|145556879|gb|ABP71492.1| Flagellar hook protein FlgE-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 239 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q L + + ++A+N++N T GFR V F+E V + D + +S + Sbjct: 1 MDAAGYTTLTRQSGLMREMQSIANNIANLSTTGFRREGVVFTEHVKRL--DGEASLSMAS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + ++ G TG DFA+ GD +F +E+P+G LTR G F +G LV G Sbjct: 59 ASARHVDLSQGGLTHTGATFDFAIMGDGFFLIETPQGEHLTRAGSFTPDAEGELVDMDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +LD P+ IP + G +S G+ I +GL+ + S Sbjct: 119 -RLLDEGGAPVFIPPDARDVVLASDGTLSSGGQPIGRIGLWQPTEPLDLRHEGGTRFSAE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P +G ++ +G LE+SN + E+ +MI + + + +D + + +R Sbjct: 178 AGVEPA---AGASLIQGSLEESNVAPISEISRMIEVQRAYELGQGFLDREDDRIRNTVRI 234 Query: 241 IA 242 + Sbjct: 235 LG 236 >gi|309388846|gb|ADO76726.1| flagellar basal-body rod protein FlgG [Halanaerobium praevalens DSM 2228] Length = 260 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 108/265 (40%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + + + +++N++N +T GF+ K+ F++++ + A Sbjct: 1 MISALWTSATGMNSQQTNIDVISNNLANVNTSGFKKSKINFADLIYTQMRQPGTPNAQGA 60 Query: 61 -------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 G+ +T + LD +EGD F ++ P G TRDG F Sbjct: 61 EVPTGIEIGHGSKVNSTQKIFTQGNIQNTDSPLDMVIEGDGLFRVQLPDGNFAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYS 162 K +G++V++ G LD QIPQ+ ++ G I+ + + + + LY Sbjct: 121 KQDSNGNVVTSDGYQ--LDPG---FQIPQEATEISITSDGTINALVDGENQQLGQIQLYR 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + + P E G TV +GFLE SN + EM MI Sbjct: 176 FANPAGLSSEGRNLYSDTVASGQAMQGVPGEQGFG-TVTQGFLEMSNVKVVEEMVNMIAA 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I +++ ML+ + Sbjct: 235 QRAYETNSKSIQASDE-MLQTANQL 258 >gi|161526184|ref|YP_001581196.1| flagellar basal body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|189349100|ref|YP_001944728.1| flagellar basal body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|221215573|ref|ZP_03588536.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD1] gi|160343613|gb|ABX16699.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans ATCC 17616] gi|189333122|dbj|BAG42192.1| flagellar basal-body rod protein [Burkholderia multivorans ATCC 17616] gi|221164561|gb|EED97044.1| flagellar basal-body rod protein FlgG [Burkholderia multivorans CGD1] Length = 262 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y +L I +PQ +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQILPA----ITVPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLEAKGENLFAETTSSGAPNVSQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|237731009|ref|ZP_04561490.1| flagellar basal body rod protein FlgG [Citrobacter sp. 30_2] gi|226906548|gb|EEH92466.1| flagellar basal body rod protein FlgG [Citrobacter sp. 30_2] Length = 260 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANSLSITIGRDGIVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|332342624|gb|AEE55958.1| flagellar basal-body rod protein FlgG [Escherichia coli UMNK88] Length = 260 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVTTERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|83721615|ref|YP_440803.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|167579490|ref|ZP_02372364.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis TXDOH] gi|167617587|ref|ZP_02386218.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis Bt4] gi|257140546|ref|ZP_05588808.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|83655440|gb|ABC39503.1| flagellar basal-body rod protein FlgG [Burkholderia thailandensis E264] Length = 262 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 102/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLTQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG + I IPQ +G G +S I + + Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITIPQNATSLTIGSDGVVSVTQPGSNNAVQIGALQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G R + + P + +G T+K+G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDARGENLFAETTSSGAPNVSQPGLNGAG-TLKQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQM 260 >gi|294339841|emb|CAZ88204.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Thiomonas sp. 3As] Length = 261 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 108/266 (40%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S + A + R+ +A+N++N +T GF+ + F +++ GA + Sbjct: 1 MIRSLYVAKTGLEAEQTRMDVIANNLANVNTSGFKGSRAVFQDLLYQNLTQPGAQSSQST 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q S + G G+ TG LD A+ G +F + P G TRDG F Sbjct: 61 QYPSGLQLGTGVRPVSTERLMTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ + G LV+A+G + IP + +G G +S + + + L Sbjct: 121 QLNNQGQLVTANGYLV-----QPTVTIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G ++ P + G +V++G+LE SN N + E+ MI Sbjct: 176 ASFVNPTGLQSIGDNLYLQTGSSGAPNTGQPTLNGLG-SVRQGYLESSNVNVVAELVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + + +++ ML+ + N Sbjct: 235 STQRAYEVNSKAVTASDQ-MLQYVNN 259 >gi|167568109|ref|ZP_02361025.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis EO147] gi|167574227|ref|ZP_02367101.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis C6786] Length = 262 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQSQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G+ TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGALQQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG + I IPQ +G G +S I + + Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITIPQNATSLTIGSDGVVSVTQPGSNNAVQIGALQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+K+G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETTSSGQPNVSQPGLNGAG-TLKQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQM 260 >gi|167585196|ref|ZP_02377584.1| flagellar basal-body rod protein FlgG [Burkholderia ubonensis Bu] Length = 262 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 107/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T G++ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGYKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS TG D A++G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLQQTGNSKDLAIDGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y VL I +PQ +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQVLPA----ITVPQNATALTIGKDGVVSVKQAGSNNAVQIGSIQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G ++ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLEAKGENLFAETTSSGAPNVSQPGLNGAG-SLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQNVTQMKS 262 >gi|15801195|ref|NP_287212.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 EDL933] gi|15830710|ref|NP_309483.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. Sakai] gi|16129041|ref|NP_415596.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|26247218|ref|NP_753258.1| flagellar basal body rod protein FlgG [Escherichia coli CFT073] gi|89107924|ref|AP_001704.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. W3110] gi|91210230|ref|YP_540216.1| flagellar basal body rod protein FlgG [Escherichia coli UTI89] gi|110641254|ref|YP_668984.1| flagellar basal body rod protein FlgG [Escherichia coli 536] gi|110805095|ref|YP_688615.1| flagellar basal body rod protein FlgG [Shigella flexneri 5 str. 8401] gi|117623264|ref|YP_852177.1| flagellar basal body rod protein FlgG [Escherichia coli APEC O1] gi|157156521|ref|YP_001462312.1| flagellar basal body rod protein FlgG [Escherichia coli E24377A] gi|168747146|ref|ZP_02772168.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4113] gi|168758629|ref|ZP_02783636.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4401] gi|168764490|ref|ZP_02789497.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4501] gi|168767737|ref|ZP_02792744.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4486] gi|168773923|ref|ZP_02798930.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4196] gi|168783608|ref|ZP_02808615.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4076] gi|168790013|ref|ZP_02815020.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC869] gi|168802023|ref|ZP_02827030.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC508] gi|170080729|ref|YP_001730049.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|170679890|ref|YP_001744102.1| flagellar basal body rod protein FlgG [Escherichia coli SMS-3-5] gi|188492805|ref|ZP_03000075.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|191168453|ref|ZP_03030241.1| flagellar basal-body rod protein FlgG [Escherichia coli B7A] gi|191172450|ref|ZP_03033991.1| flagellar basal-body rod protein FlgG [Escherichia coli F11] gi|193064556|ref|ZP_03045636.1| flagellar basal-body rod protein FlgG [Escherichia coli E22] gi|193069501|ref|ZP_03050455.1| flagellar basal-body rod protein FlgG [Escherichia coli E110019] gi|194438123|ref|ZP_03070216.1| flagellar basal-body rod protein FlgG [Escherichia coli 101-1] gi|195935468|ref|ZP_03080850.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. EC4024] gi|208806632|ref|ZP_03248969.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4206] gi|208815071|ref|ZP_03256250.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4045] gi|208822750|ref|ZP_03263069.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4042] gi|209399139|ref|YP_002269924.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4115] gi|209918332|ref|YP_002292416.1| flagellar basal body rod protein FlgG [Escherichia coli SE11] gi|215486287|ref|YP_002328718.1| flagellar basal body rod protein FlgG [Escherichia coli O127:H6 str. E2348/69] gi|217328263|ref|ZP_03444345.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. TW14588] gi|218553656|ref|YP_002386569.1| flagellar basal body rod protein FlgG [Escherichia coli IAI1] gi|218557960|ref|YP_002390873.1| flagellar basal body rod protein FlgG [Escherichia coli S88] gi|218694612|ref|YP_002402279.1| flagellar basal body rod protein FlgG [Escherichia coli 55989] gi|218700419|ref|YP_002408048.1| flagellar basal body rod protein FlgG [Escherichia coli IAI39] gi|218704486|ref|YP_002412005.1| flagellar basal body rod protein FlgG [Escherichia coli UMN026] gi|227886564|ref|ZP_04004369.1| flagellar basal body rod protein FlgG [Escherichia coli 83972] gi|237706936|ref|ZP_04537417.1| flagellar basal-body rod protein flgG [Escherichia sp. 3_2_53FAA] gi|238900332|ref|YP_002926128.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BW2952] gi|253773898|ref|YP_003036729.1| flagellar basal body rod protein FlgG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161184|ref|YP_003044292.1| flagellar basal body rod protein FlgG [Escherichia coli B str. REL606] gi|254792460|ref|YP_003077297.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. TW14359] gi|256018665|ref|ZP_05432530.1| flagellar basal body rod protein FlgG [Shigella sp. D9] gi|256023224|ref|ZP_05437089.1| flagellar basal body rod protein FlgG [Escherichia sp. 4_1_40B] gi|260843318|ref|YP_003221096.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|260854561|ref|YP_003228452.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|260867441|ref|YP_003233843.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|261227017|ref|ZP_05941298.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK2000] gi|261256251|ref|ZP_05948784.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK966] gi|291282098|ref|YP_003498916.1| Flagellar basal-body rod protein flgG [Escherichia coli O55:H7 str. CB9615] gi|293404362|ref|ZP_06648356.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1412] gi|293409444|ref|ZP_06653020.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|293433368|ref|ZP_06661796.1| flagellar basal-body rod protein FlgG [Escherichia coli B088] gi|297516691|ref|ZP_06935077.1| flagellar basal body rod protein FlgG [Escherichia coli OP50] gi|298380142|ref|ZP_06989747.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1302] gi|300816780|ref|ZP_07097000.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300821141|ref|ZP_07101290.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 119-7] gi|300899597|ref|ZP_07117836.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300902469|ref|ZP_07120451.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 84-1] gi|300918680|ref|ZP_07135261.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 115-1] gi|300922604|ref|ZP_07138704.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 182-1] gi|300928370|ref|ZP_07143904.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 187-1] gi|300938643|ref|ZP_07153372.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|300950173|ref|ZP_07164118.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 116-1] gi|300954382|ref|ZP_07166836.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 175-1] gi|300974382|ref|ZP_07172594.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 45-1] gi|300982619|ref|ZP_07176203.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 200-1] gi|301023265|ref|ZP_07187062.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 69-1] gi|301029707|ref|ZP_07192761.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 196-1] gi|301051138|ref|ZP_07197968.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 185-1] gi|301304983|ref|ZP_07211085.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 124-1] gi|301328552|ref|ZP_07221613.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 78-1] gi|301644990|ref|ZP_07244956.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|306814073|ref|ZP_07448246.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|307137713|ref|ZP_07497069.1| flagellar basal body rod protein FlgG [Escherichia coli H736] gi|307310144|ref|ZP_07589794.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|309798072|ref|ZP_07692447.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 145-7] gi|312968848|ref|ZP_07783055.1| flagellar basal-body rod protein FlgG [Escherichia coli 2362-75] gi|331641622|ref|ZP_08342757.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331646336|ref|ZP_08347439.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|331657140|ref|ZP_08358102.1| flagellar basal-body rod protein FlgG [Escherichia coli TA206] gi|331662484|ref|ZP_08363407.1| flagellar basal-body rod protein FlgG [Escherichia coli TA143] gi|331667478|ref|ZP_08368342.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331672598|ref|ZP_08373387.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|331676869|ref|ZP_08377565.1| flagellar basal-body rod protein FlgG [Escherichia coli H591] gi|331682580|ref|ZP_08383199.1| flagellar basal-body rod protein FlgG [Escherichia coli H299] gi|332279734|ref|ZP_08392147.1| flagellar basal-body rod protein FlgG [Shigella sp. D9] gi|78100014|sp|P0ABX7|FLGG_ECO57 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|78100015|sp|P0ABX6|FLGG_ECOL6 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|78100016|sp|P0ABX5|FLGG_ECOLI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|12514619|gb|AAG55824.1|AE005318_1 flagellar biosynthesis, cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. EDL933] gi|26107619|gb|AAN79818.1|AE016759_92 Flagellar basal-body rod protein flgG [Escherichia coli CFT073] gi|1787318|gb|AAC74162.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|4062656|dbj|BAA35887.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K12 substr. W3110] gi|13360920|dbj|BAB34879.1| flagellar basal body rod protein flgG [Escherichia coli O157:H7 str. Sakai] gi|91071804|gb|ABE06685.1| flagellar basal body rod protein FlgG [Escherichia coli UTI89] gi|110342846|gb|ABG69083.1| flagellar basal-body rod protein FlgG [Escherichia coli 536] gi|110614643|gb|ABF03310.1| flagellar basal-body rod protein FlgG [Shigella flexneri 5 str. 8401] gi|115512388|gb|ABJ00463.1| flagellar basal-body rod protein FlgG [Escherichia coli APEC O1] gi|157078551|gb|ABV18259.1| flagellar basal-body rod protein FlgG [Escherichia coli E24377A] gi|169888564|gb|ACB02271.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|170517608|gb|ACB15786.1| flagellar basal-body rod protein FlgG [Escherichia coli SMS-3-5] gi|187770380|gb|EDU34224.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4196] gi|188018193|gb|EDU56315.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4113] gi|188488004|gb|EDU63107.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|188999095|gb|EDU68081.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4076] gi|189354587|gb|EDU73006.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4401] gi|189363057|gb|EDU81476.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4486] gi|189365523|gb|EDU83939.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4501] gi|189370495|gb|EDU88911.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC869] gi|189375944|gb|EDU94360.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC508] gi|190901472|gb|EDV61233.1| flagellar basal-body rod protein FlgG [Escherichia coli B7A] gi|190907334|gb|EDV66932.1| flagellar basal-body rod protein FlgG [Escherichia coli F11] gi|192927808|gb|EDV82422.1| flagellar basal-body rod protein FlgG [Escherichia coli E22] gi|192957249|gb|EDV87698.1| flagellar basal-body rod protein FlgG [Escherichia coli E110019] gi|194423059|gb|EDX39053.1| flagellar basal-body rod protein FlgG [Escherichia coli 101-1] gi|208726433|gb|EDZ76034.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4206] gi|208731719|gb|EDZ80407.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4045] gi|208738235|gb|EDZ85918.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4042] gi|209160539|gb|ACI37972.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC4115] gi|209773358|gb|ACI84991.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773360|gb|ACI84992.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773362|gb|ACI84993.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773364|gb|ACI84994.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209773366|gb|ACI84995.1| flagellar basal body rod protein flgG [Escherichia coli] gi|209911591|dbj|BAG76665.1| flagellar basal-body rod protein FlgG [Escherichia coli SE11] gi|215264359|emb|CAS08716.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O127:H6 str. E2348/69] gi|217318690|gb|EEC27116.1| flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. TW14588] gi|218351344|emb|CAU97050.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli 55989] gi|218360424|emb|CAQ97978.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli IAI1] gi|218364729|emb|CAR02419.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli S88] gi|218370405|emb|CAR18212.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli IAI39] gi|218431583|emb|CAR12462.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli UMN026] gi|222032831|emb|CAP75570.1| flagellar basal-body rod protein flgG [Escherichia coli LF82] gi|226898146|gb|EEH84405.1| flagellar basal-body rod protein flgG [Escherichia sp. 3_2_53FAA] gi|227836768|gb|EEJ47234.1| flagellar basal body rod protein FlgG [Escherichia coli 83972] gi|238861100|gb|ACR63098.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BW2952] gi|242376882|emb|CAQ31599.1| flagellar basal-body rod protein FlgG, subunit of Flagellar Motor Complex and Flagellum [Escherichia coli BL21(DE3)] gi|253324942|gb|ACT29544.1| flagellar basal-body rod protein FlgG [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973085|gb|ACT38756.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli B str. REL606] gi|253977299|gb|ACT42969.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli BL21(DE3)] gi|254591860|gb|ACT71221.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli O157:H7 str. TW14359] gi|257753210|dbj|BAI24712.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|257758465|dbj|BAI29962.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|257763797|dbj|BAI35292.1| flagellar component FlgG of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|260449782|gb|ACX40204.1| flagellar basal-body rod protein FlgG [Escherichia coli DH1] gi|281178187|dbj|BAI54517.1| flagellar basal-body rod protein FlgG [Escherichia coli SE15] gi|284920901|emb|CBG33964.1| flagellar basal-body rod protein FlgG [Escherichia coli 042] gi|290761971|gb|ADD55932.1| Flagellar basal-body rod protein flgG [Escherichia coli O55:H7 str. CB9615] gi|291324187|gb|EFE63609.1| flagellar basal-body rod protein FlgG [Escherichia coli B088] gi|291428948|gb|EFF01973.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1412] gi|291469912|gb|EFF12396.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|294490415|gb|ADE89171.1| flagellar basal-body rod protein FlgG [Escherichia coli IHE3034] gi|298279840|gb|EFI21348.1| flagellar basal-body rod protein flgG [Escherichia coli FVEC1302] gi|299877395|gb|EFI85606.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 196-1] gi|300297159|gb|EFJ53544.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 185-1] gi|300307084|gb|EFJ61604.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 200-1] gi|300318618|gb|EFJ68402.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 175-1] gi|300356868|gb|EFJ72738.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300397110|gb|EFJ80648.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 69-1] gi|300405501|gb|EFJ89039.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 84-1] gi|300410625|gb|EFJ94163.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 45-1] gi|300414174|gb|EFJ97484.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 115-1] gi|300421081|gb|EFK04392.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 182-1] gi|300450520|gb|EFK14140.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 116-1] gi|300456428|gb|EFK19921.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|300463628|gb|EFK27121.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 187-1] gi|300526440|gb|EFK47509.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 119-7] gi|300530554|gb|EFK51616.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300839701|gb|EFK67461.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 124-1] gi|300844944|gb|EFK72704.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 78-1] gi|301076719|gb|EFK91525.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|305852710|gb|EFM53158.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|306909862|gb|EFN40356.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|307553080|gb|ADN45855.1| flagellar basal-body rod protein FlgG [Escherichia coli ABU 83972] gi|308118355|gb|EFO55617.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 145-7] gi|309701350|emb|CBJ00651.1| flagellar basal-body rod protein FlgG [Escherichia coli ETEC H10407] gi|312286250|gb|EFR14163.1| flagellar basal-body rod protein FlgG [Escherichia coli 2362-75] gi|312945640|gb|ADR26467.1| flagellar basal body rod protein FlgG [Escherichia coli O83:H1 str. NRG 857C] gi|315060356|gb|ADT74683.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli W] gi|315135710|dbj|BAJ42869.1| flagellar basal-body rod protein flgG [Escherichia coli DH1] gi|315253879|gb|EFU33847.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 85-1] gi|315287367|gb|EFU46778.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 110-3] gi|315291072|gb|EFU50435.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 153-1] gi|315296709|gb|EFU56004.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 16-3] gi|315618248|gb|EFU98838.1| flagellar basal-body rod protein FlgG [Escherichia coli 3431] gi|320189761|gb|EFW64417.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. EC1212] gi|320196440|gb|EFW71063.1| Flagellar basal-body rod protein FlgG [Escherichia coli WV_060327] gi|320200974|gb|EFW75558.1| Flagellar basal-body rod protein FlgG [Escherichia coli EC4100B] gi|320637529|gb|EFX07329.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. G5101] gi|320643090|gb|EFX12291.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H- str. 493-89] gi|320648548|gb|EFX17203.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H- str. H 2687] gi|320653862|gb|EFX21936.1| flagellar basal body rod protein FlgG [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659342|gb|EFX26911.1| flagellar basal body rod protein FlgG [Escherichia coli O55:H7 str. USDA 5905] gi|320664477|gb|EFX31628.1| flagellar basal body rod protein FlgG [Escherichia coli O157:H7 str. LSU-61] gi|323156885|gb|EFZ43019.1| flagellar basal-body rod protein FlgG [Escherichia coli EPECa14] gi|323163703|gb|EFZ49523.1| flagellar basal-body rod protein FlgG [Escherichia coli E128010] gi|323175691|gb|EFZ61285.1| flagellar basal-body rod protein FlgG [Escherichia coli 1180] gi|323185799|gb|EFZ71160.1| flagellar basal-body rod protein FlgG [Escherichia coli 1357] gi|323190590|gb|EFZ75862.1| flagellar basal-body rod protein FlgG [Escherichia coli RN587/1] gi|323379083|gb|ADX51351.1| flagellar basal-body rod protein FlgG [Escherichia coli KO11] gi|323937818|gb|EGB34082.1| flagellar basal-body rod protein FlgG [Escherichia coli E1520] gi|323942547|gb|EGB38714.1| flagellar basal-body rod protein FlgG [Escherichia coli E482] gi|323947620|gb|EGB43624.1| flagellar basal-body rod protein FlgG [Escherichia coli H120] gi|323953236|gb|EGB49102.1| flagellar basal-body rod protein FlgG [Escherichia coli H252] gi|323957902|gb|EGB53614.1| flagellar basal-body rod protein FlgG [Escherichia coli H263] gi|323962677|gb|EGB58255.1| flagellar basal-body rod protein FlgG [Escherichia coli H489] gi|323967019|gb|EGB62445.1| flagellar basal-body rod protein FlgG [Escherichia coli M863] gi|323973333|gb|EGB68522.1| flagellar basal-body rod protein FlgG [Escherichia coli TA007] gi|323976549|gb|EGB71637.1| flagellar basal-body rod protein FlgG [Escherichia coli TW10509] gi|324007918|gb|EGB77137.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 57-2] gi|324013352|gb|EGB82571.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 60-1] gi|324017418|gb|EGB86637.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 117-3] gi|324117351|gb|EGC11258.1| flagellar basal-body rod protein FlgG [Escherichia coli E1167] gi|326339300|gb|EGD63114.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. 1125] gi|326344739|gb|EGD68487.1| Flagellar basal-body rod protein FlgG [Escherichia coli O157:H7 str. 1044] gi|327253477|gb|EGE65115.1| flagellar basal-body rod protein FlgG [Escherichia coli STEC_7v] gi|330910892|gb|EGH39402.1| flagellar basal-body rod protein FlgG [Escherichia coli AA86] gi|331038420|gb|EGI10640.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331045088|gb|EGI17215.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|331055388|gb|EGI27397.1| flagellar basal-body rod protein FlgG [Escherichia coli TA206] gi|331060906|gb|EGI32870.1| flagellar basal-body rod protein FlgG [Escherichia coli TA143] gi|331065063|gb|EGI36958.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331070241|gb|EGI41607.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|331075558|gb|EGI46856.1| flagellar basal-body rod protein FlgG [Escherichia coli H591] gi|331080211|gb|EGI51390.1| flagellar basal-body rod protein FlgG [Escherichia coli H299] gi|332102086|gb|EGJ05432.1| flagellar basal-body rod protein FlgG [Shigella sp. D9] gi|333004888|gb|EGK24408.1| flagellar basal-body rod protein FlgG [Shigella flexneri VA-6] Length = 260 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|311280015|ref|YP_003942246.1| flagellar basal-body rod protein FlgG [Enterobacter cloacae SCF1] gi|308749210|gb|ADO48962.1| flagellar basal-body rod protein FlgG [Enterobacter cloacae SCF1] Length = 260 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTVRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQILLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G Y V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGYQVQPA----ITIPANTLSITIGRDGVVSVTQQGQTNPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDAGLESIGENLYTETQASGAPNDTTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVTTTDQMLQKLTQ 259 >gi|198244335|ref|YP_002215958.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938851|gb|ACH76184.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623706|gb|EGE30051.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 260 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSGQT 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|291613040|ref|YP_003523197.1| flagellar basal-body rod protein FlgG [Sideroxydans lithotrophicus ES-1] gi|291583152|gb|ADE10810.1| flagellar basal-body rod protein FlgG [Sideroxydans lithotrophicus ES-1] Length = 260 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 107/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLEAQQTQMDVISNNLANVSTNGFKRSRAVFEDLLYQNLRQPGAQSSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ T +LD A++G +F + P G TRDG F Sbjct: 61 QIPSGLQIGTGVRPVATERIHTQGNLQQTSNQLDVAIQGAGFFQVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 + G +V+++G I IP +G+ G ++Q G + +M L Sbjct: 121 QTDSQGQIVTSNGFVV-----QPAITIPANATTVTIGQDGVVTVTQPGATAPVQVGSMQL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G + + TP ++ G ++ +G++E SN N + E+ MI Sbjct: 176 ATFINPTGLESMGQNMYLETASSGTPSTNVPGTNGTGSISQGYVETSNVNVVEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEINSKAITVSDQMLQKLAQ 259 >gi|157371205|ref|YP_001479194.1| flagellar basal body rod protein FlgG [Serratia proteamaculans 568] gi|157322969|gb|ABV42066.1| flagellar basal-body rod protein FlgG [Serratia proteamaculans 568] Length = 260 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 103/265 (38%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIPSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDIAIKGQGFFQVMMPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + +G LV+ASG I IP VG G +S + + + L Sbjct: 121 QRDQNGQLVTASGFQV-----QPAIIIPANALSITVGRDGIVSVTQQGQTAAQQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFINDSGLESMGENLYQETESSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|302878278|ref|YP_003846842.1| flagellar basal-body rod protein FlgG [Gallionella capsiferriformans ES-2] gi|302581067|gb|ADL55078.1| flagellar basal-body rod protein FlgG [Gallionella capsiferriformans ES-2] Length = 260 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 106/262 (40%), Gaps = 30/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ T+A+N++N T GF+ + F +++ GA + Sbjct: 1 MIRSLWISKTGLDAQQTQMDTIANNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQSSQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ TG +LD A+ G +F + P G TRDG F Sbjct: 61 QIPSGLQIGTGVRPVAAERIHTQGNLQQTGNQLDVAINGSGFFQVLMPDGSTGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G +V+ASG +PV I +P +G G +S + +M + Sbjct: 121 QRDAQGQMVTASG-FPVQPA----ISLPANAITVTIGRDGVVSVTQPGVAAPVQVGSMQV 175 Query: 161 YSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G + + + TP ++ G + + ++E SN N + EM MI Sbjct: 176 TTFINPAGLMAQGENLYQETASSGTPSTNVPGTNGSGLLSQNYVETSNVNVVEEMVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 236 TQRAYEINSKSITTSDQMLQKL 257 >gi|193222346|emb|CAL62046.2| Flagellar basal-body rod protein FlgG (Distal rod protein) [Herminiimonas arsenicoxydans] Length = 260 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 103/265 (38%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + ++ +++N++N T GF+ + F +++ S Sbjct: 1 MIRSLWISKTGLDAQQTQMDVISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T + A+EGD +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVRPVATERIHTQGNLQLTSNAKNLAIEGDGFFQVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + + G +V++SG I IP+ + G +S I + L Sbjct: 121 QTDNQGQMVTSSGF-----PIQPAITIPENATSITISRDGIVSVTVSGTTAATEIGALQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + R + TP + +G+ +K+ ++E SN N + E+ MI Sbjct: 176 ATFINPAGLMSRGENLYVETTASGTANTNTPGSNGAGL-LKQNYVETSNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 235 QTQRAYEINSKAITTSDQMLQRLTQ 259 >gi|16760055|ref|NP_455672.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764535|ref|NP_460150.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142174|ref|NP_805516.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413834|ref|YP_150909.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179696|ref|YP_216113.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614598|ref|YP_001588563.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553033|ref|ZP_02346783.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994043|ref|ZP_02575135.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234105|ref|ZP_02659163.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237261|ref|ZP_02662319.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244778|ref|ZP_02669710.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264028|ref|ZP_02686001.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467131|ref|ZP_02700973.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822622|ref|ZP_02834622.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446556|ref|YP_002040433.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450313|ref|YP_002045178.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472223|ref|ZP_03078207.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734396|ref|YP_002114178.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251031|ref|YP_002146864.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262058|ref|ZP_03162132.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362757|ref|YP_002142394.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200390304|ref|ZP_03216915.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207857313|ref|YP_002243964.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213424682|ref|ZP_03357447.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582039|ref|ZP_03363865.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613179|ref|ZP_03371005.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648928|ref|ZP_03378981.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865503|ref|ZP_03387622.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584317|ref|YP_002638115.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911001|ref|ZP_04654838.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289828578|ref|ZP_06546403.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392289|sp|P0A1J3|FLGG_SALTY RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|60392290|sp|P0A1J4|FLGG_SALTI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|25298926|pir||AD0640 flagellar basal-body rod protein FlgG (distal rod protein) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|47677|emb|CAA36314.1| flgG protein product (AA 1-260) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419696|gb|AAL20109.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502349|emb|CAD08303.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhi] gi|29137804|gb|AAO69365.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128091|gb|AAV77597.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127329|gb|AAX65032.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363962|gb|ABX67730.1| hypothetical protein SPAB_02348 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405219|gb|ACF65441.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408617|gb|ACF68836.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458587|gb|EDX47426.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709898|gb|ACF89119.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630467|gb|EDX49093.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094234|emb|CAR59739.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214734|gb|ACH52131.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240313|gb|EDY22933.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289797|gb|EDY29158.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602749|gb|EDZ01295.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322431|gb|EDZ10270.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328014|gb|EDZ14778.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331903|gb|EDZ18667.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336447|gb|EDZ23211.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341038|gb|EDZ27802.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347402|gb|EDZ34033.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709116|emb|CAR33449.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468844|gb|ACN46674.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246390|emb|CBG24199.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992953|gb|ACY87838.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157720|emb|CBW17212.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912166|dbj|BAJ36140.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086381|emb|CBY96154.1| Flagellar basal-body rod protein flgG Distal rod protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223797|gb|EFX48860.1| Flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616549|gb|EFY13458.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620510|gb|EFY17374.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622504|gb|EFY19349.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629655|gb|EFY26430.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632625|gb|EFY29371.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636880|gb|EFY33583.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641582|gb|EFY38220.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644072|gb|EFY40618.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650028|gb|EFY46446.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653953|gb|EFY50276.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658485|gb|EFY54747.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663343|gb|EFY59545.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670077|gb|EFY66217.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674859|gb|EFY70950.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676671|gb|EFY72738.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682593|gb|EFY78612.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686654|gb|EFY82633.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714166|gb|EFZ05737.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129449|gb|ADX16879.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195768|gb|EFZ80944.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198340|gb|EFZ83444.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323209179|gb|EFZ94116.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209683|gb|EFZ94612.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217861|gb|EGA02576.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222149|gb|EGA06533.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224921|gb|EGA09179.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229663|gb|EGA13786.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232888|gb|EGA16984.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240623|gb|EGA24665.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242937|gb|EGA26958.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250254|gb|EGA34143.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252629|gb|EGA36467.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258843|gb|EGA42496.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261032|gb|EGA44625.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266941|gb|EGA50426.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269982|gb|EGA53431.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332988070|gb|AEF07053.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 260 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|78221652|ref|YP_383399.1| flagellar basal body rod protein FlgG [Geobacter metallireducens GS-15] gi|78192907|gb|ABB30674.1| Flagellar basal-body rod FlgG [Geobacter metallireducens GS-15] Length = 262 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + + A + + VA+N++N +T GF+ + F +++ G+ + Sbjct: 1 MIRALWTAASGMQAQQTNIDVVANNLANVNTAGFKKSRADFQDLMYQNMKTTGSPSTNTT 60 Query: 54 QKISFVASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G +G+ TG ELD A+EGD ++ ++ P G TR G F Sbjct: 61 QVPSGIQIGLGAKLAAVTKIFTIGNINQTGNELDMAIEGDGFYQIQMPDGTTTYTRSGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K G +V++ G YP++ I IP N+G G +S + + L Sbjct: 121 KRDSQGRVVTSDG-YPLIPE----IVIPNNATAINIGNDGTVSVSQAGQKSPTNVGNIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E+ TP ++ G T +GFLE SN + M EM MI Sbjct: 176 AMFSNPSGLLAIGKNLFQESDSSGNATTGTPGQNGLGTT-AQGFLEMSNVSVMEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + ++ ML+ ++ Sbjct: 235 TGQRAYEVNSKAVQTADE-MLQTANSL 260 >gi|327480022|gb|AEA83332.1| flagellar basal body rod protein FlgG [Pseudomonas stutzeri DSM 4166] Length = 261 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 108/266 (40%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF+ + +F +++ I+ Sbjct: 1 MLPALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSSQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQLGTGVRITGTQKIFTTGSLQTTEQPLDMAINGRGFFQVLLPDGTVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ DG LV+++G I +P + + F VGE G +S + ++I + Sbjct: 121 HLSSDGQLVTSNGY-----ALEPAIVVPPETQTFTVGEDGTVSVTTVGNPQPQIIGNIQT 175 Query: 161 YSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G ++ + P G+ TV + LE+SN + + E+ MI Sbjct: 176 ADFINPAGLQAMGSNLFLETAASGAPQVSTPGLNGLGTVLQNTLENSNVSVVEELVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 236 TQRAYEMNSKVISTADQMLSFVTQQL 261 >gi|297183134|gb|ADI19277.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0200_39L23] Length = 262 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + A ++ + T A+N++N +T G++ KV F +++ + S Sbjct: 1 MMRALYTAATGMAAQQRNIDTTANNLANVNTSGYKKSKVHFQDLLYHNERTAGVPSSVST 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V G +++ E G+ +TG +LD +++G +F + P GI+ +RDG F Sbjct: 61 QVPVGLHVGHGVKFIGTEKIHTQGNLENTGNDLDISIDGHGFFQILQPNGIVGYSRDGHF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV+ G I IPQ VG G ++ + I ++ L Sbjct: 121 NIDGMGRLVTNDGMLL-----DPEINIPQDTRKIEVGFDGTVTVFLRDETMPEAIGSVQL 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G N +S + D G ++ +GFLE SN + + EM MI Sbjct: 176 ARFQNPAGLTPIGKNLYVSTPASGNAIVDAPGANSMGSLTQGFLERSNVSLVEEMVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML+ N+ Sbjct: 236 SQRAYEVNSKAIQSADE-MLKNTNNL 260 >gi|331652131|ref|ZP_08353150.1| flagellar basal-body rod protein FlgG [Escherichia coli M718] gi|331050409|gb|EGI22467.1| flagellar basal-body rod protein FlgG [Escherichia coli M718] Length = 260 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNETGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|78777301|ref|YP_393616.1| flagellar basal body rod protein FlgG [Sulfurimonas denitrificans DSM 1251] gi|78497841|gb|ABB44381.1| Flagellar basal-body rod FlgG [Sulfurimonas denitrificans DSM 1251] Length = 262 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 118/267 (44%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + ++ +++T A+N++N +T+GF+ + +F++++ + + S V Sbjct: 1 MMQSLYTASTGMIGMQTQINTTANNIANVNTIGFKKSRAEFADLMYKVMDYAGTSTSDVT 60 Query: 61 SGKEYL-------------SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + GS T ELD A+ G +F LE P G + +R+G F Sbjct: 61 KSPTGIEVGLGVRPTAINKVFSEGSLKQTDNELDVAVTGKGFFKLELPDGSEVYSRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 KV ++GS+V++ G V + IP N+G G +S + I M L Sbjct: 121 KVDENGSIVNSDGYRLV-----PEVVIPPDATNINIGTDGTVSVVQAGQAQATQIGQMTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + TP D GV +++GF+E SN + E+ +I Sbjct: 176 TNFINPAGLHSMGDNLYIETDSSGQPVEGTPGLDGLGV-LRQGFVELSNVELVVELTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + ++S + +I +++ ML+ N+ Sbjct: 235 TGQRAYDSNSKVITTSDE-MLQTTNNL 260 >gi|292489131|ref|YP_003532018.1| flagellar basal-body rod protein FlgG [Erwinia amylovora CFBP1430] gi|292900250|ref|YP_003539619.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291200098|emb|CBJ47224.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291554565|emb|CBA22177.1| Flagellar basal-body rod protein flgG [Erwinia amylovora CFBP1430] gi|312173289|emb|CBX81544.1| Flagellar basal-body rod protein flgG [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + + +++N++N + GF+ + F +++ Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + VA+ GS TG + D A++G +F ++ P G TRDG F Sbjct: 61 TLPTGMQLGTGVATVATQRMHTQGSLTQTGRDYDMAIQGKGFFQVQLPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + ++G +V+A G PV I +P + VGE G ++ + I + L Sbjct: 121 SLNENGQMVTAEGN-PVQPD----ITVPADAQKLTVGEDGIVTATVPGQAAPQQIGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G + + P E G+ +K ++E SN N E+ MI Sbjct: 176 ANFINDAGLESLGGNLYAETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + + +++ + + Sbjct: 236 VQRAYEINSKAVSASDQMLQRLAQ 259 >gi|160896077|ref|YP_001561659.1| flagellar basal-body rod protein FlgG [Delftia acidovorans SPH-1] gi|160361661|gb|ABX33274.1| flagellar basal-body rod protein FlgG [Delftia acidovorans SPH-1] Length = 260 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 103/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N T G++ F +++ + + Sbjct: 1 MINSLFISKTGMEAQQTQLDVISHNLANVSTTGYKRASAVFEDLIYQNLRQSGAQTTEQN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + + G+ + LD A++G+ +F + P G TRDG F Sbjct: 61 QLPTGLHLGLGVRTVATSRNFLQGALQQSNNALDVAIDGNGFFQVNMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V G LV+ASG + + IPQ ++ +G +S + + + + Sbjct: 121 QVDAQGQLVTASGM-----PIANGVTIPQGATKVSISPEGVVSVTMAGQAAPQQVGNIAM 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 G R + + P + GV +K+G+LE SN N + E+ MI Sbjct: 176 SQFINPAGLEPRGQNLFTETASSGQPQQGQPGVNGMGMIKQGYLEGSNVNVVQELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 236 TQRAYEMNSKAIQTSDQMLAKLAQ 259 >gi|157160605|ref|YP_001457923.1| flagellar basal body rod protein FlgG [Escherichia coli HS] gi|170020526|ref|YP_001725480.1| flagellar basal body rod protein FlgG [Escherichia coli ATCC 8739] gi|312971215|ref|ZP_07785393.1| flagellar basal-body rod protein FlgG [Escherichia coli 1827-70] gi|157066285|gb|ABV05540.1| flagellar basal-body rod protein FlgG [Escherichia coli HS] gi|169755454|gb|ACA78153.1| flagellar basal-body rod protein FlgG [Escherichia coli ATCC 8739] gi|310336417|gb|EFQ01603.1| flagellar basal-body rod protein FlgG [Escherichia coli 1827-70] Length = 260 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T G++ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGYKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|170768358|ref|ZP_02902811.1| flagellar basal-body rod protein FlgG [Escherichia albertii TW07627] gi|170123124|gb|EDS92055.1| flagellar basal-body rod protein FlgG [Escherichia albertii TW07627] Length = 260 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAVPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYSETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|126738579|ref|ZP_01754284.1| flagellar basal-body rod protein FlgF [Roseobacter sp. SK209-2-6] gi|126720378|gb|EBA17084.1| flagellar basal-body rod protein FlgF [Roseobacter sp. SK209-2-6] Length = 238 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ Q L + + VA+N++N+ T G+R+ + FSE V + Q +S Sbjct: 1 MGATSYTTLSRQSGLMREMRVVANNIANSATTGYRSEGLIFSEYVQSSPGQ--QSLSMSR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S E G TG DFA+EG+ +F +E+P G LTR G F +G LV+ G Sbjct: 59 ANIYNTSLEQGQLTKTGGTFDFAIEGEGFFMVETPMGERLTRAGAFSPNAEGDLVTMDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y V+D P+ +P + VG G I+ G I +GL+ VR + Sbjct: 118 YRVMDAGGSPVFVPGSAQSIEVGADGTITADGNSIGQIGLFRPADKNTMVREDGVMFRVE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E+ V + +G+ E SN N++ ++ +MI + + + + ++ ++ + +AI+N Sbjct: 178 GDIDPAEN---VAMLQGYTEGSNVNAIGQVTRMIEIQRAYEMGQSFLETEDRRIRDAIKN 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|157146224|ref|YP_001453543.1| flagellar basal body rod protein FlgG [Citrobacter koseri ATCC BAA-895] gi|157083429|gb|ABV13107.1| hypothetical protein CKO_01981 [Citrobacter koseri ATCC BAA-895] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP VG G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANSLSITVGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|51599026|ref|YP_073214.1| flagellar hook-basal body complex protein [Borrelia garinii PBi] gi|51573597|gb|AAU07622.1| flagellar hook-basal body complex protein [Borrelia garinii PBi] Length = 282 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 111/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A +L V++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERHKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +T LD AL +F +++ G T Sbjct: 61 PKGHLETAPIVGKLGTGVEENEIYTLFEQGPLKTTSNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G+I Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQIFHNSSFESNPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ G Sbjct: 177 VSEHENSWENYELLDTIRIVNFENPRFLKKQGNSLWVDTKTSGKAQEIDISLRPKIETGA 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|296103609|ref|YP_003613755.1| Flagellar basal-body rod protein, FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058068|gb|ADF62806.1| Flagellar basal-body rod protein, FlgG [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + + +++N++N +T GF+ + F +++ Sbjct: 1 MIRSLWIAKTGLEAQQLNMDVISNNLANVNTNGFKRQRAVFQDLLYQNMRQPGAQSTEQN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G TG E D A+EG+ +F ++ P G TRDG F Sbjct: 61 TLPSGLQLGTGVRPVSTQRVHTQGGMNQTGDEYDVAIEGEGFFQVQMPDGSTAYTRDGHF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG LV+A G YP+ I IPQ N+G G +S + + I + L Sbjct: 121 SKSPDGQLVNAEG-YPIQPG----IVIPQDATKLNIGSDGIVSVKVPGQAEEQQIGQLTL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + + G + P E G+ T+K+ ++E SN N E+ MI Sbjct: 176 TTFVNNAGLESIGGNLYKETQSSGAPNELNPGMESAGTLKQSYVEISNVNVAEELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + + +++ ML+ + + Sbjct: 236 VQRAYEINSKAVSASDQ-MLQRLSQL 260 >gi|99082801|ref|YP_614955.1| flagellar basal body rod protein FlgF [Ruegeria sp. TM1040] gi|99039081|gb|ABF65693.1| Flagellar basal-body rod protein flgG [Ruegeria sp. TM1040] Length = 238 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ Q L + VA+N++N+ T G+R+ + FSE V + + +S Sbjct: 1 MGSIGYTTLSRQSGLLNEMQAVANNIANSATTGYRSEGLIFSEYVKSAPGQ--ESLSMGR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S E G+ T D A+EG+ +F +E+P G LTR G F +G LV+A G Sbjct: 59 ANIRNTSLEQGTMNQTNGTFDLAIEGEGFFMVETPAGNRLTRAGNFTPNAEGDLVTADG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VLD P+ +P E + G G +S G+ + +GL+ D +R + Sbjct: 118 YRVLDAGQAPMFVPGGAESISFGADGTLSADGQQLGQIGLFVPDEDAQILREDGVMFRVE 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P +G V +GFLE SN N+++++ +MI + + + + +D +K + AI N Sbjct: 178 GETLPA---AGAQVLQGFLEGSNVNTIHQLARMIEVQRAYEMGQSFLDHEDKRIRSAIDN 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|218549194|ref|YP_002382985.1| flagellar basal body rod protein FlgG [Escherichia fergusonii ATCC 35469] gi|218356735|emb|CAQ89363.1| flagellar component of cell-distal portion of basal-body rod [Escherichia fergusonii ATCC 35469] gi|324113873|gb|EGC07847.1| flagellar basal-body rod protein FlgG [Escherichia fergusonii B253] gi|325497614|gb|EGC95473.1| flagellar basal body rod protein FlgG [Escherichia fergusonii ECD227] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + P E G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYVETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 236 VQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|261344140|ref|ZP_05971784.1| flagellar basal-body rod protein FlgG [Providencia rustigianii DSM 4541] gi|282567732|gb|EFB73267.1| flagellar basal-body rod protein FlgG [Providencia rustigianii DSM 4541] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + L +++N++N T GF+ + F +++ GA+ +D Sbjct: 1 MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNIRQPGAMSSDQT 60 Query: 54 QKISFVASGK------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S + G G+ TGT D A++G + ++ P G TRDG Sbjct: 61 SLPSGLQMGTGARPVATMRIHSQGNLNKTGTTTDIAIKGQGFLHVQMPDGTDAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG LV++SG V I IP+ ++ G +S + + I + L Sbjct: 121 QPNQDGQLVTSSGYQVV-----PAIMIPENANSLSIARDGTVSVTVYGDNQPQQIGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P + +G+ + +G LE SN N E+ MI Sbjct: 176 TTFINDAGLESMGENLYMETASSGAPKESAPGTNGAGL-LYQGMLETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 QTQRAYEINSKAVSASDQMLQRLTQ 259 >gi|204930805|ref|ZP_03221678.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320264|gb|EDZ05468.1| flagellar basal-body rod protein FlgG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVILPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|256830176|ref|YP_003158904.1| flagellar basal-body rod protein FlgG [Desulfomicrobium baculatum DSM 4028] gi|256579352|gb|ACU90488.1| flagellar basal-body rod protein FlgG [Desulfomicrobium baculatum DSM 4028] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 112/265 (42%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---------IKND 51 M + + +A + L A+N++N +T GF+ + +F +++ + D Sbjct: 1 MIRALWTSASGMIAQQLNLDVTANNLANVNTTGFKKNRAEFEDLMYQNMKIAGSSNQEGD 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V G +S G F +TG +LD +EGD +F ++ TR G FK Sbjct: 61 RLPVGMQVGMGVRPVSVHKIFTQGDFQNTGNQLDLVIEGDGFFRVDRGGEESYTRSGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIAT-MGLYS 162 + DG +V+ +G +P+ +P + + V E G ++ ++ T + +Y+ Sbjct: 121 LDSDGRIVTDNG-HPLQPEF----IVPPETQNIVVTEDGRLTCVDKAGAEIAGTDIPVYT 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + G + P E+ +G T+ +GFLE SN + EM MI Sbjct: 176 FVNPAGLKAMGRNLYVQTDGSGEAVESVPGENNAG-TLAQGFLEMSNVEIVEEMVNMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + ML+ + Sbjct: 235 QRAYEANSKSITTAD-MMLQTANQL 258 >gi|259907636|ref|YP_002647992.1| Flagellar basal-body rod protein, FlgG [Erwinia pyrifoliae Ep1/96] gi|224963258|emb|CAX54742.1| Flagellar basal-body rod protein, FlgG [Erwinia pyrifoliae Ep1/96] gi|283477478|emb|CAY73394.1| Flagellar basal-body rod protein flgG [Erwinia pyrifoliae DSM 12163] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + + +++N++N + GF+ + F +++ Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + VA+ GS TG + D A++G +F ++ P G TRDG F Sbjct: 61 TLPTGMQLGTGVATVATQRMHTQGSLTQTGRDYDMAIQGKGFFQVQLPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + ++G +V+A G PV I +P + VGE G ++ + I + L Sbjct: 121 SLNENGQMVTAEGN-PVQPD----ITVPADAQKLTVGEDGIVTATVPGQAAPQQIGQLTL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G + + P E G+ +K ++E SN N E+ MI Sbjct: 176 ANFINDAGLESLGGNLYVETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + + +++ + + Sbjct: 236 VQRAYEINSKAVSASDQMLQRLAQ 259 >gi|295696121|ref|YP_003589359.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295411723|gb|ADG06215.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 265 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 110/264 (41%), Gaps = 27/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++ + ++ + +N++N +TVGF+ +V F +++ Sbjct: 1 MMRSLYSAVSGMRGFQTKMDVIGNNIANVNTVGFKASRVMFHDLISQTLSGATAPGDTTG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 ++ Q V G+ + TG D A++G+ +F ++ G TR G F Sbjct: 61 GSNPQQVGLGVGLASIDTPMTPGAPMMTGVPTDLAIDGNGFFVVQLSDGATQAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLY 161 + + +LV++ G + VLD PIQ+P + ++ + G ++ + A +GL Sbjct: 121 HIDSNRNLVTSEGLF-VLDTGGAPIQLPDNTKSVSIDKNGNVNCLLDDGTTQTAAQIGLA 179 Query: 162 SVDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + +G + N+ P + + G ++ G LE SN + E +MI Sbjct: 180 NFANPEGLQKIGNNLFVETTNSGTADVQAPNQGVFG-SITSGALEMSNVDLTNEFTEMII 238 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + F + I +++ + E + Sbjct: 239 AQRAFQANARTITSDDQMLQEVVN 262 >gi|197120124|ref|YP_002140551.1| flagellar basal body rod protein FlgF [Geobacter bemidjiensis Bem] gi|197089484|gb|ACH40755.1| flagellar basal body rod protein FlgF [Geobacter bemidjiensis Bem] Length = 238 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ L+ ++RL +++N++N++T GF+ +++F V+ +KN Q F Sbjct: 1 MNSGIYAALSGNLSAQRRLDVISNNLANSNTSGFKADQIQFESVLANVKNPTQQAPVFSN 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G+ T LD AL+GD +F + +P+G TR G F + G LV+A G Sbjct: 61 D-RYSTDYSPGAMQRTENALDVALDGDGFFVVNTPQGPAYTRQGNFFRSQAGRLVNADGF 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 S+ + GE+ G + T+ + G+ Sbjct: 120 EVQGSGGSI----AIGGGKVEIAGNGEVVVNGATVGTLSKVDFPKPYQLTKIGG-GLFVP 174 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + +VK+G+LE SN + EM +MI ++ F + + + +A+ Sbjct: 175 ANPQAAPAPTQASVKQGYLESSNVKVVVEMARMIEASRYFETCAKAVKSYDDMTAKAVNE 234 Query: 241 IA 242 + Sbjct: 235 LG 236 >gi|320173530|gb|EFW48726.1| Flagellar basal-body rod protein FlgG [Shigella dysenteriae CDC 74-1112] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G + TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSVYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|313141242|ref|ZP_07803435.1| flagellar basal-body rod protein distal rod protein [Helicobacter canadensis MIT 98-5491] gi|313130273|gb|EFR47890.1| flagellar basal-body rod protein distal rod protein [Helicobacter canadensis MIT 98-5491] Length = 262 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 31/265 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + L + ++ ++N+SN +T G+R + +F+++ + S Sbjct: 1 MRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETTL 60 Query: 58 -----FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 V G S G+F T LD A+ G+ +F +E P G TRDG FK Sbjct: 61 SPTGIEVGLGVRPTSVQKIFSQGNFKETENNLDIAITGNGFFQIELPDGTIAYTRDGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLY 161 + D+G++V++ G V I IP N+G G +S + + + Sbjct: 121 LDDEGNVVNSQGYLLV-----PNITIPDDATQINIGTDGTVSVVQGNETEVNELGQIETV 175 Query: 162 SVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHL 216 + G ++ ++ N P+ G+ +++GF+E SN + EM +I Sbjct: 176 NFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLRQGFVETSNVKLVEEMTDLIVG 235 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ + + Sbjct: 236 QRAYEANSKSIQTAD-SMLQIVNQL 259 >gi|225620642|ref|YP_002721900.1| flagellar basal body rod protein [Brachyspira hyodysenteriae WA1] gi|225215462|gb|ACN84196.1| flagellar basal body rod protein [Brachyspira hyodysenteriae WA1] Length = 282 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 115/284 (40%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGAIKND------ 51 M G + +A + RL VA+N++N D GF+ V F E++ A D Sbjct: 1 MVRGVYTGASGMMAEQARLDVVANNLANVDKPGFKRDTVSFKAFPEMMAARTEDDGVVIF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + + E GS TG +LD AL +FA+E+P G T Sbjct: 61 PLGSTDVRPYVGRMGTGVEVNEVFTEWEQGSLRETGNQLDIALGDKGFFAIETPNGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKG---- 152 R+G F + D LV+ G Y V+ IQI K FN+ E+G +S Q G Sbjct: 121 RNGSFLIDKDHYLVTKHG-YKVMGENGY-IQI--KTNNFNIDEEGRVSINRRYQDGNTFV 176 Query: 153 ----------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----EDLSGVTVKRGF 198 +++ T+ + D + + S P + ++ V F Sbjct: 177 QFNDNEWEDEEILDTLKIVRFDNERYLKKEGESFWVDTDISGPAFIAEKGVNRPKVLSRF 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N + EM +MI + + + + I ++ + I + Sbjct: 237 LEMSNVNPINEMVRMIEVQRAYELNSKTISTHDTLVGRVINEVG 280 >gi|206558970|ref|YP_002229730.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia J2315] gi|198035007|emb|CAR50879.1| flagellar basal-body rod protein FlgG (distal rod protein) [Burkholderia cenocepacia J2315] Length = 262 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++NT T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y VL I +PQ + +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQVLPA----ITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +GV + +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLEAKGENLFAETTSSGAPNVSQPGLNGAGV-LNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|300716220|ref|YP_003741023.1| flagellar basal-body rod protein [Erwinia billingiae Eb661] gi|299062056|emb|CAX59172.1| Flagellar basal-body rod protein [Erwinia billingiae Eb661] Length = 260 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T + D A+ G +F ++ P G TRDG F Sbjct: 61 TLPSGMQLGTGVRPVATERLHTQGNLNKTDSSKDVAISGQGYFQVQMPDGTLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 + +G LV+ +G +PV I +P +G G +S + + + L Sbjct: 121 QTDQNGQLVT-NGGFPVQPA----ITVPANALSMTIGRDGVVSVTQQGQTQPVQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 STFINDAGLESKGENLYQETQASGAPTDSTPGNNGAGL-LYQGYVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEINSKAISTSDQMLAKLTQ 259 >gi|167835113|ref|ZP_02461996.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis MSMB43] Length = 262 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLQQTGNSKDVAINGQGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG + I +PQ +G G +S I + + Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITMPQNATSLTIGSDGVVSVTQPGSNNAVQIGALQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+K+G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETTSSGAPNVSQPGLNGAG-TLKQGYVESSNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQM 260 >gi|107023951|ref|YP_622278.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia AU 1054] gi|105894140|gb|ABF77305.1| Flagellar basal-body rod FlgG [Burkholderia cenocepacia AU 1054] Length = 262 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A A + ++ +++N++NT T GF+ + F +++ Sbjct: 1 MNRSLYIAAAGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y VL I +PQ + +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQVLPA----ITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +GV + +G++E SN N + E+ MI Sbjct: 176 ATFINPTGLEAKGENLFAETTSSGAPNVSQPGLNGAGV-LNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|116331368|ref|YP_801086.1| flagellar basal body rod protein FlgG [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125057|gb|ABJ76328.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 264 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 35/266 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKISF 58 S +A + + T+++N++N +T GF+ + F ++V + +S Sbjct: 1 MRSLWTAATGMIAQQFHIDTISNNLANVNTTGFKKNRADFEDLVYQHQVLAGTPATSVSE 60 Query: 59 VASGKEYLS----------KEVGSFISTGTELDFALEGD-AWFALESPRGI-ILTRDGRF 106 + +G E+GSF +TG +LD A+ G+ +F ++ P G +RDG F Sbjct: 61 IPTGVNVGHGVRAAASQKLFEIGSFQATGNKLDMAITGEMGFFKIQMPDGSFAFSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKD--EIFNVGEKGEISQ------KGKVIATM 158 K+ + +V+++G P+ +P+ + E+GE++ + VI + Sbjct: 121 KIDSNQQVVTSNGYLL-----EPPLILPEGAILNTLMISEQGEVTVKVGADIRPIVIGQV 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY G + +E P IP TP + G V +GFLE SN + EM Sbjct: 176 ELYRFVNPAGLQAIGKNLFQETVASGPEIPGTPGMEGFG-NVLQGFLEMSNVKIVEEMVA 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S + I ++ + AI Sbjct: 235 MIVAQRAYESNSKAIQTSDNMLSTAI 260 >gi|295678056|ref|YP_003606580.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1002] gi|295437899|gb|ADG17069.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1002] Length = 262 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGAGFFQVQMPDGQTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG + I IP +G G + S + + TM L Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITIPANATSLTIGSDGSVSITVAGSSNTQQLGTMQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDSKGENLFAETASSGAPNVAQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQTL 257 >gi|205353083|ref|YP_002226884.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272864|emb|CAR37793.1| flagellar basal-body rod protein FlgG (distal rod protein) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628163|gb|EGE34506.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 260 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + ++ + + + Sbjct: 235 QVQRAYEINCKAVSTTDQMLQKLTQ 259 >gi|54308098|ref|YP_129118.1| flagellar basal body rod protein FlgF [Photobacterium profundum SS9] gi|46912524|emb|CAG19316.1| putative flagellar basal-body rod protein FlgF [Photobacterium profundum SS9] Length = 249 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + T A+N++N T GFR ++ + + A + ++ F Sbjct: 1 MDRALYLAMSGAKQDMYGMQTHANNLANVRTTGFRAD-LEQARSMQAYGEGLPSRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + GS ++TG +LD A+EGD W A+ G TR G K+ + G L +++G Sbjct: 59 TERPGQDFSQGSVMTTGRDLDVAIEGDGWLAVLDASGQEAYTRAGHLKIDETGMLQNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +L PI IP VG G IS + ++ + L D + + Sbjct: 119 NL-MLGENGGPIFIPLPISKIQVGNDGTISVLPQGAPPEAMEIVDRLKLVRPDN-RDLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P + +GVT+ +G LE SN N++ EM MI L + F ++ E Sbjct: 177 DVNGLFKSKTPGVIYDADAGVTLLKGALEGSNVNAVGEMTSMIDLQRHFEMQVKIMKTAE 236 Query: 232 KSMLEA 237 + M +A Sbjct: 237 E-MDQA 241 >gi|291276427|ref|YP_003516199.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] gi|290963621|emb|CBG39453.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] Length = 262 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 107/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S L + ++ T ++N++N +TVG++ + +F+++ S Sbjct: 1 MMRSLYSATTGMLGQQLQIDTTSNNIANVNTVGYKRQRAEFNDLFYQNLQYAGTATSETT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G GS T LD A+ G +F + P G TR G F Sbjct: 61 LSPTGIEVGLGVRPGAIAKMFSQGSPKETENNLDMAITGKGFFQVRLPDGTTAYTRSGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ D+G++V++ G + I +PQ N+G G +S I + L Sbjct: 121 KLDDNGNVVTSEGYALI-----PQITVPQDATQINIGNDGTVSVVQGNNGGSNTIGQIEL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G ++ ++ + P+ ++G +K+GFLE SN + EM +I Sbjct: 176 ADFINPAGLHSLGDNLYLNTSASGAPITGVAGTNGMGQIKQGFLELSNVRLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + + Sbjct: 236 GQRAYEANSKSIQTAD-AMLQTVNGL 260 >gi|317153844|ref|YP_004121892.1| flagellar basal-body rod protein FlgG [Desulfovibrio aespoeensis Aspo-2] gi|316944095|gb|ADU63146.1| flagellar basal-body rod protein FlgG [Desulfovibrio aespoeensis Aspo-2] Length = 260 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S +A++ + T+++N++N +T GF+ + +F +++ + Sbjct: 1 MMRSLWTAATGMVAMQTHIDTLSNNLANVNTTGFKKSRAEFEDLMYQTLQIAGTETQSGG 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V G +S G F +TG LD A+EG+ +F ++ + TRDG FK Sbjct: 61 RLPVGMQVGMGVRPVSVHKFFTQGDFKNTGNPLDIAIEGEGFFLVDMNGEDVYTRDGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIAT--MGLYS 162 + ++G +V+A G VL IP + + E G IS G +A + +Y Sbjct: 121 LDNEGRVVTAGGH--VL---QPEFTIPPETVSVVITETGHISALDKDGAALAETDIDIYR 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G R + + TP ++ G T+ + FLE SN + EM +I Sbjct: 176 FQNPAGLTAIGRNFYRGSEASGDAVAGTPGDENFG-TLAQAFLEGSNVEMVDEMVGLIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + AI Sbjct: 235 QRAYEINSKAITTSDGMLQTAIN 257 >gi|253702433|ref|YP_003023622.1| flagellar basal-body rod protein FlgF [Geobacter sp. M21] gi|251777283|gb|ACT19864.1| flagellar basal-body rod protein FlgF [Geobacter sp. M21] Length = 237 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 7/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ L+ ++RL +++N++N++T GF+ +++F V+ +KN + + Sbjct: 1 MNSGIYAALSGNLSAQRRLDVISNNLANSNTAGFKADQIQFESVLANVKNPTQTPV--FS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G+ T LD AL+GD +F + +P+G TR G F + G LV+A G Sbjct: 59 NDRYSTDYSPGALQRTENALDLALDGDGFFVVNTPQGPAYTRQGNFFRSQAGRLVNADGF 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 ++ V GE+ G +AT+ + G+ Sbjct: 119 EVQGSGGAI----AIGGGKVEVSGNGEVVVNGATVATLSKVDFPKPYQLTKIGG-GLFVP 173 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + TVK+G+LE SN + EM +MI ++ F + T + + +A+ Sbjct: 174 ANPQAAPAPTAATVKQGYLESSNVKVVVEMARMIEASRYFETCTKAVKSYDDMTAKAVNE 233 Query: 241 IA 242 + Sbjct: 234 LG 235 >gi|161503733|ref|YP_001570845.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865080|gb|ABX21703.1| hypothetical protein SARI_01818 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 260 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALNITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|186477699|ref|YP_001859169.1| flagellar basal body rod protein FlgG [Burkholderia phymatum STM815] gi|184194158|gb|ACC72123.1| flagellar basal-body rod protein FlgG [Burkholderia phymatum STM815] Length = 262 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 103/263 (39%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ T+++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDTISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 + G LV++SG Y VL I IPQ +G G +S I ++ + Sbjct: 121 QTNSQGQLVTSSG-YQVLPA----ITIPQNATSLTIGSDGVVSVTTAGSTATTQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + TP + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPTGLDAKGENLFAETTSSGTPNVATPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQTL 257 >gi|194432508|ref|ZP_03064795.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 1012] gi|194419395|gb|EDX35477.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 1012] gi|332092914|gb|EGI97982.1| flagellar basal-body rod protein FlgG [Shigella dysenteriae 155-74] Length = 260 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M +S I A + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S + G S G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGGRSVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP ++G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSISIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|296135671|ref|YP_003642913.1| flagellar basal-body rod protein FlgG [Thiomonas intermedia K12] gi|295795793|gb|ADG30583.1| flagellar basal-body rod protein FlgG [Thiomonas intermedia K12] Length = 261 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 108/266 (40%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S + A + R+ +A+N++N +T GF+ + F +++ GA + Sbjct: 1 MIRSLYVAKTGLEAEQTRMDVIANNLANVNTSGFKGSRAVFQDLLYQNLTQPGAQSSQST 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q S + G G+ TG LD A+ G +F + P G TRDG F Sbjct: 61 QYPSGLQLGTGVRPVSTERLMTQGNLTQTGNSLDVAINGQGFFQVLEPNGTIAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ + G LV+A+G + IP + +G G +S + + + L Sbjct: 121 QLNNQGQLVTANGYLV-----QPTVTIPASAQSVTIGNDGTVSVTLPGQAAPQQVGALQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G ++ P + G +V++G+LE SN N + E+ MI Sbjct: 176 ASFVNPTGLQSIGDNLYLQTGSSGAPNTGQPTLNGLG-SVQQGYLESSNVNVVAELVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + + +++ ML+ + N Sbjct: 235 STQRAYEVNSKAVTASDQ-MLQYVNN 259 >gi|116691038|ref|YP_836661.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia HI2424] gi|170734372|ref|YP_001766319.1| flagellar basal body rod protein FlgG [Burkholderia cenocepacia MC0-3] gi|254246967|ref|ZP_04940288.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|116649127|gb|ABK09768.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia HI2424] gi|124871743|gb|EAY63459.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|169817614|gb|ACA92197.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] Length = 262 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++NT T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y VL I +PQ + +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQVLPA----ITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +GV + +G++E SN N + E+ MI Sbjct: 176 ATFINPTGLEAKGENLFAETTSSGAPNVSQPGLNGAGV-LNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|241766922|ref|ZP_04764728.1| flagellar basal-body rod protein FlgG [Acidovorax delafieldii 2AN] gi|241362626|gb|EER58474.1| flagellar basal-body rod protein FlgG [Acidovorax delafieldii 2AN] Length = 259 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 100/264 (37%), Gaps = 31/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L ++ N++N T G++ F +++ + S Sbjct: 1 MINSLWIAKTGMSAQQTQLDVISHNLANVSTTGYKRNNAVFEDLIYQNLRQVGANSSEQS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G+ +G + D A+ G +F + P G TRDG F Sbjct: 61 QLPTGLHLGLGVNVVATNRDFRQGALQQSGKDFDLAINGAGFFQVSMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLY 161 + DG +V++SG YP+ D I ++ GE++ K + L Sbjct: 121 TIDKDGQMVNSSG-YPLTDG----ITKVAGAVKASIAANGEVTFTDSAGKAVGTGRLTLA 175 Query: 162 SVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 S G + +E+ +P G +K+GFLE SN N + E+ MI Sbjct: 176 SFINPAGLEPVGQNLYKESIASGNPQTGSPTSAGFG-ELKQGFLETSNVNVVEELVTMIQ 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 TQRAYEMNSKAIQTSDQMLAKLAQ 258 >gi|209884527|ref|YP_002288384.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5] gi|209872723|gb|ACI92519.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5] Length = 255 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 15/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + + L+ Q+ LE++LS VA+N++N T G++ F E + + + D++ Sbjct: 1 MENTSLVALSRQMTLERQLSVVANNVANIGTNGYKADSSLFEEYLRSGAHEDNFVGFDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV G +T LD A+ G +F +++P G +RDGR ++ G LV Sbjct: 61 VSFVHDRATLRDFGQGPLENTKAPLDVAISGKGFFTVQTPNGERYSRDGRLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEK-------GEISQKGKVIATMGLYSVDMSQG 168 ++SG YPVL V I D + + G I+Q + + L S Q Sbjct: 121 NSSG-YPVLGTNGV-ITFQPTDHDVKISDNGTITVLEGTITQTDSIRGRLRLTSFASPQQ 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 ++E S + +D + TVK+GF+E SN N++ EM +M+ +T+ + +I+ L+ Sbjct: 179 L-QKEGSNLFTAPANVTGQDDTVSTVKQGFIERSNVNAIAEMSRMLEITRTYQNISNLMQ 237 Query: 229 ENEKSMLEAIRNIA 242 + AI+ +A Sbjct: 238 QQADLRKNAIQTLA 251 >gi|157738176|ref|YP_001490860.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] gi|157700030|gb|ABV68190.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] Length = 262 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M A++ ++ ++N++N +T GF+ + +F +++ N + + Sbjct: 1 MIRGLYTAATGMNAMQHQIDVTSNNIANVNTTGFKKDRAEFQDLMYESLNYTAGRTTQTT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G STG LD A+ G +F + P G +R+G F Sbjct: 61 LNPTGIDVGLGVRISNIQKEFTEGDLKSTGNPLDIAIAGKGFFQITLPSGETAYSRNGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVI--ATMGL 160 K+ ++G++V+ +G YP+ I +P + +VG G ++ Q G I + L Sbjct: 121 KLNEEGTIVNGNG-YPLQPE----IVVPNNVKDISVGTDGLVTAKDPQTGDTIELGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G +S + I P + G ++K+ LE SN + EM +I Sbjct: 176 ADFINPAGLTPLGDSLFMQSEASGDVIEGDPTTEQFG-SLKQSMLESSNVKLVNEMVDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML+ + + Sbjct: 235 TAQRAYEANSKAITTAD-NMLDIVNRL 260 >gi|317047693|ref|YP_004115341.1| flagellar basal-body rod protein FlgG [Pantoea sp. At-9b] gi|316949310|gb|ADU68785.1| flagellar basal-body rod protein FlgG [Pantoea sp. At-9b] Length = 260 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRSRAVFEDLMYQTVRQPGTQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A+ G +F ++ P G TRDG F Sbjct: 61 TLPSGMQIGTGVRPVTTERLHTQGNLSQTSNSKDLAINGQGYFEVQMPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V +G LV+ SG Y V I IP V G +S + + L Sbjct: 121 QVDQNGQLVTNSG-YTVQPG----ITIPANATSITVSRDGIVSVTQQGQTNPTQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP ++ +G+ + +G++E SN N E+ MI Sbjct: 176 STFMNDAGLDSLGENLYQETQASGAATQSTPGQNGAGL-LYQGYVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 235 QTQRAYEINSKAVSTSDQMLAKLTQ 259 >gi|95929874|ref|ZP_01312615.1| Flagellar basal-body rod FlgG [Desulfuromonas acetoxidans DSM 684] gi|95134170|gb|EAT15828.1| Flagellar basal-body rod FlgG [Desulfuromonas acetoxidans DSM 684] Length = 261 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 99/267 (37%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + +A+N++N +T GF+ + F E++ + S Sbjct: 1 MIRALWTAATGMDSQQTNIDVIANNLANVNTSGFKKSRADFQELLYQVSKTPGSSTSADT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G + T ELD A+EG +F +E P G TR G Sbjct: 61 VSPTGIQVGLGSRTAAVQKVFSTGDMMQTENELDLAIEGRGFFQVEMPDGTTAYTRSGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K DG L ++ G + I IP+ ++G+ G + I + + Sbjct: 121 KKDGDGRLTTSEGYLL-----TPQIVIPENTTSISIGQDGTVDVFLDGESTSTEIGVIEM 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + + P E+ G T+ +G+LE SN + M EM MI Sbjct: 176 AIFSNESGLRSLGRNLFAETLSSGVANTGIPGENGLG-TLSQGYLEGSNVSVMEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML+ N+ Sbjct: 235 AGQRAYEVNSKAIQTADE-MLQMTNNL 260 >gi|218778846|ref|YP_002430164.1| flagellar basal body rod protein FlgG [Desulfatibacillum alkenivorans AK-01] gi|218760230|gb|ACL02696.1| Flagellar basal-body rod protein FlgG [Desulfatibacillum alkenivorans AK-01] Length = 260 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 111/265 (41%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M A + + V++N++N +T F+ + F +++ GA Sbjct: 1 MLRGLWTAATGMEAQQLNIDVVSNNLANINTTAFKRSRPDFQDLMYQTIRVAGATTTGGT 60 Query: 54 QKISFVASGKEYLSKE------VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 Q + + G G + TG +LD+A+EG+ +F + S + TR G FK Sbjct: 61 QLPTGLQVGMGSKPTGVQKIFVQGDYSQTGNDLDWAIEGNGFFKVLSNNEEVYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG---KVIAT--MGLYS 162 + +G + +A+G+ +P + +V G+++ G + +AT + LY Sbjct: 121 IDSEGYITTAAGERL-----QPEFAVPADAVLISVDSGGKLTAFGPANEEVATYDITLYD 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + + TP ++ G T+ +GFLE SN N + EM MI Sbjct: 176 FANPAGLYSMGRNLYKTTEASGEEVEGTPGDEGFG-TISQGFLEMSNVNVVEEMVTMIIA 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ N+ Sbjct: 235 QRAYEANSKAIQTAD-SMLQIANNV 258 >gi|148266116|ref|YP_001232822.1| flagellar basal body rod protein FlgG [Geobacter uraniireducens Rf4] gi|146399616|gb|ABQ28249.1| flagellar basal-body rod protein FlgG [Geobacter uraniireducens Rf4] Length = 262 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + + A + + VA+N++N +T GF+ + F +++ GA + Sbjct: 1 MIRALWTAASGMQAQQLNIDVVANNLANVNTTGFKKSRADFQDLMYQNLKTSGAPSTNAT 60 Query: 54 QKISFVASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + + G G+ TG E+D A+EG+ +F ++ P G +R G F Sbjct: 61 QIPTGIQVGLGSKAAAVSKIFTAGNITQTGNEMDLAIEGEGFFQIQMPDGSTNYSRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K G +V++ G YP+L + IP VG G +S + T+ L Sbjct: 121 KKDSQGRMVNSDG-YPLLPE----VIIPNNATKITVGNDGTVSVMQSGQNTPTSVGTIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + T ++ G T+ +GFLE SN + M EM MI Sbjct: 176 ATFSNPAGLSSLGHNLYQPTDSSGAATTGTSGQNGIG-TLSQGFLEMSNVSVMEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + ++ ML+ N+ Sbjct: 235 VGQRAYEINSKAVQAADE-MLQTANNL 260 >gi|332531620|ref|ZP_08407517.1| flagellar basal-body rod FlgG [Hylemonella gracilis ATCC 19624] gi|332038983|gb|EGI75412.1| flagellar basal-body rod FlgG [Hylemonella gracilis ATCC 19624] Length = 259 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 109/262 (41%), Gaps = 31/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A +++L T+++N++N+ T GF+ V F +++ S Sbjct: 1 MFNSLWIAKTGMEAQQRQLDTISNNLANSSTNGFKRSSVVFEDLMYQNLRTAGSPSSEQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + G+ + G LD A+ G+ +F + P G TRDG Sbjct: 61 NLPTGLQVGLGARAVATSRNYTQGNLVQ-GRPLDVAINGNGFFQVSMPDGTTQYTRDGAL 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +++ G+LV+++G P+ D I IP ++ + G ++ K + I + L Sbjct: 120 EISATGALVTSNG-LPLADG----IVIPPNASDLSIADDGTVTAKLPGQTVAQTIGNITL 174 Query: 161 YSVDMSQGFVRRENSGISPNI----PPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 + G + + + P T +G+ + +G+LE SN N + E+ MI Sbjct: 175 ATFINPAGLEAKGQNLFAETAASGTPNTGAPSANGIGKLMQGYLESSNVNVVQELVTMIQ 234 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 TQRAYEMNSKAIQTSDQMLQKL 256 >gi|330818583|ref|YP_004362288.1| flagellar basal-body rod protein FlgG [Burkholderia gladioli BSR3] gi|327370976|gb|AEA62332.1| flagellar basal-body rod protein FlgG [Burkholderia gladioli BSR3] Length = 262 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 107/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A++G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGALTQTGNSRDIAIDGSGFFQVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y VL I +PQ + +G G ++ I M + Sbjct: 121 HPNNQGQLVTSSG-YQVLPA----ITVPQNAQSLTIGTDGVVTVTQPGSTNAVQIGAMQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + +G + + TP + +G ++ +G++E SN N + E+ MI Sbjct: 176 ATFINPEGLQALGQNLFAETTSSGVPNVTTPGLNGAG-SLNQGYVESSNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|310764858|gb|ADP09808.1| Flagellar basal-body rod protein, FlgG [Erwinia sp. Ejp617] Length = 260 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 103/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + + +++N++N + GF+ + F +++ Sbjct: 1 MIRSLWIAKTGLEAQQTNMDVISNNLANVGSTGFKRQRAVFQDLLYQTMRQPGAQASEQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + VA+ GS TG + D A++G +F ++ P G TRDG F Sbjct: 61 TLPTGMQLGTGVATVATQRMHTQGSLTQTGRDYDMAIQGKGFFQVQLPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + ++G +V+A G P+ I +P + VGE G ++ + I + L Sbjct: 121 SLNENGQMVTAEGN-PLQPD----ITVPADAQKLTVGEDGIVTATVPGQAAPQQIGQLTL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G + + P E G+ +K ++E SN N E+ MI Sbjct: 176 ANFINDAGLESLGGNLYVETQASGAPNEATPGMDGAGRLKHQYIETSNVNVAEELVTMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + + +++ + + Sbjct: 236 VQRAYEINSKAVSASDQMLQRLAQ 259 >gi|237752808|ref|ZP_04583288.1| flagellar basal-body rod protein distal rod protein [Helicobacter winghamensis ATCC BAA-430] gi|229376297|gb|EEO26388.1| flagellar basal-body rod protein distal rod protein [Helicobacter winghamensis ATCC BAA-430] Length = 263 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + L + ++ ++N+SN +T G+R + +F+++ + S Sbjct: 1 MMRALYTATTGMLGQQLQIDVTSNNISNVNTFGYRKERAEFADLFHQVLQYAGSSTSETT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G+F T LD A+ G+ +F +E P G TRDG F Sbjct: 61 LSPTGIEVGLGVRPTAVQKIFSQGNFKETEQNLDVAITGNGFFQIELPDGTIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K D+G++V+A G V I IP N+G+ G ++ + + + Sbjct: 121 KRDDEGNVVNAQGYLLV-----PNITIPDDATQINIGKDGTVTVVQGNETEVNQLGQIET 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G ++ ++ N P+ G+ + +GF+E SN + EM +I Sbjct: 176 VNFINPAGLHALGDNLYLNTNASGDPIVGTPGLNGFGQLAQGFVETSNVKLVEEMTDLIV 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + SML+ + + Sbjct: 236 GQRAYEANSKSIQTAD-SMLQIVNQL 260 >gi|260893868|ref|YP_003239965.1| fagellar hook-basal body protein [Ammonifex degensii KC4] gi|260866009|gb|ACX53115.1| fagellar hook-basal body protein [Ammonifex degensii KC4] Length = 266 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 110/264 (41%), Gaps = 28/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ +A+N++N +T GF+ + F +++ + V Sbjct: 1 MLRSLFSGVSGLRVHQIRMDVIANNIANINTTGFKAARANFQDILSQTLGRSAVNTTQVG 60 Query: 61 SGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-------ILTRDGRFKVT 109 G + G+ +TG LD A+EG+ +F ++ + TRDG F + Sbjct: 61 LGVSLAAIDNIMTQGALQTTGRALDLAIEGNGFFVVKPVDSSGNSVNHPLYTRDGTFYID 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQI--PQKDEIFNVGEKGEISQ----KGKVIATMGLYSV 163 G +V+A G Y + ++ IQI P K ++G G IS K+ +GL + Sbjct: 121 KSGYIVNAQG-YRLQSTSNDNIQIADPDKIVSISIGSDGVISVVKSDGTKITYNIGLVTF 179 Query: 164 DMSQGFVRRENSGI---------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + R + + P P D G ++ GFLE SN + E MI Sbjct: 180 KNPESLQRVGANLWDVTPNVTDPATPTPGAPGTDGRGY-IRSGFLEMSNVDLAQEFTNMI 238 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 + + + +I +++ + E + Sbjct: 239 ITQRGYQANARVITTSDELLRELV 262 >gi|212709494|ref|ZP_03317622.1| hypothetical protein PROVALCAL_00536 [Providencia alcalifaciens DSM 30120] gi|212687832|gb|EEB47360.1| hypothetical protein PROVALCAL_00536 [Providencia alcalifaciens DSM 30120] Length = 260 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 98/265 (36%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + L +++N++N T GF+ + F +++ Sbjct: 1 MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNIRQPGAMSSEQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + G+ TGT D A++G + ++ P G TRDG Sbjct: 61 SLPSGLQMGTGARPVATVRIHSQGNLNKTGTTTDIAIKGQGFLHVQMPDGTDAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG LV++SG V I IP+ ++ G +S + + I + L Sbjct: 121 QRNQDGQLVTSSGYQVV-----PAIMIPENANSLSIARDGTVSVTVYGDNQPQQIGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P + +G+ + +G LE SN N E+ MI Sbjct: 176 TTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGL-LYQGMLETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 QTQRAYEINSKAVSASDQMLQRLTQ 259 >gi|254521223|ref|ZP_05133278.1| flagellar basal-body rod protein FlgG [Stenotrophomonas sp. SKA14] gi|219718814|gb|EED37339.1| flagellar basal-body rod protein FlgG [Stenotrophomonas sp. SKA14] Length = 257 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 103/261 (39%), Gaps = 31/261 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID----------- 53 I A + R+S V++N++NT+T GF+ + F +++ Sbjct: 1 MWIAKTGLDAQQMRMSVVSNNLANTNTTGFKQDRASFEDLLYQQVRQPGGSSSAQTQLPT 60 Query: 54 --QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 Q + V + E G TG LD + G +F ++ P G TRDG FK+ Sbjct: 61 GLQLGTGVRVVATAKNFEQGGQQQTGRALDVMVNGRGFFEVQMPDGSSAYTRDGSFKINQ 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVD 164 D LV+ SG YPV IQIP+ + +G G IS K + + L Sbjct: 121 DSELVTNSG-YPVQPG----IQIPEGAQSVTIGTDGTISVKMADGAASVEVGALTLTDFV 175 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGV-----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 G R + P ++ + TV +G LE SN N + E+ MI + Sbjct: 176 NPAGLQARGENLFLETTASGPAQNGNPGLNGLGTVVQGALEGSNVNVVEELVSMIETQRA 235 Query: 220 FNSITTLIDENEKSMLEAIRN 240 + I + SML + N Sbjct: 236 YEMNAKAISTTD-SMLGYLNN 255 >gi|82544456|ref|YP_408403.1| flagellar basal body rod protein FlgG [Shigella boydii Sb227] gi|81245867|gb|ABB66575.1| cell-distal portion of basal-body rod [Shigella boydii Sb227] gi|320186975|gb|EFW61688.1| Flagellar basal-body rod protein FlgG [Shigella flexneri CDC 796-83] gi|332094081|gb|EGI99133.1| flagellar basal-body rod protein FlgG [Shigella boydii 3594-74] Length = 260 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 106/267 (39%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + + ++ M + + + Sbjct: 235 QVQRAYEINSKAVSTTDQ-MQQKLTQL 260 >gi|118475132|ref|YP_891713.1| flagellar basal body rod protein FlgG [Campylobacter fetus subsp. fetus 82-40] gi|118414358|gb|ABK82778.1| flagellar basal-body rod protein FlgG [Campylobacter fetus subsp. fetus 82-40] Length = 262 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S +A + ++ T + N++N +T+G++ + +F++++ S Sbjct: 1 MIRSLYTAATGMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G + G F TG LD + G+ +F ++ P G TR+G F Sbjct: 61 MSPTGMEVGLGVRPTAITKVFGQGYFKETGNNLDMVIAGNGFFQIQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K+ DG++V++ G Y +L + IP +VG G +S Q+ I + L Sbjct: 121 KLDGDGNIVNSDG-YRLLPE----MNIPADATQISVGVDGTVSVLQPGNQEMTQIGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 + G ++ +G T +K+GF+E SN + EM +I Sbjct: 176 ANFINPSGLHAMGDNNFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML+ + + Sbjct: 236 GQRAYEANSKAITTADE-MLQTVNQL 260 >gi|161620214|ref|YP_001594100.1| flagellar basal body rod protein FlgF [Brucella canis ATCC 23365] gi|161337025|gb|ABX63329.1| flagellar basal body rod protein [Brucella canis ATCC 23365] Length = 233 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 15/244 (6%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ P + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGAP----------RISSDGAIYQNGVQVGVIGLYTIPADADLAYAGTSGVIP 166 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI+ Sbjct: 167 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAIK 226 Query: 240 NIAS 243 + S Sbjct: 227 TLGS 230 >gi|66046704|ref|YP_236545.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae B728a] gi|63257411|gb|AAY38507.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Pseudomonas syringae pv. syringae B728a] Length = 262 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF++ + +F +++ IK Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V + GS +T LD A+ G +F + P G +RDG F Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMG 159 + +G +V+A+G I +PQ + F VG+ G +S ++I + Sbjct: 121 HLDANGQIVTANGY-----ALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 G + E TP + G T+ + LE+SN +++ E+ M Sbjct: 176 TADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTL-QNTLENSNVSTVEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + +I ++ + +N+ Sbjct: 235 ITTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|115353116|ref|YP_774955.1| flagellar basal body rod protein FlgG [Burkholderia ambifaria AMMD] gi|170703098|ref|ZP_02893918.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria IOP40-10] gi|171321840|ref|ZP_02910741.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MEX-5] gi|172061970|ref|YP_001809622.1| flagellar basal body rod protein FlgG [Burkholderia ambifaria MC40-6] gi|115283104|gb|ABI88621.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria AMMD] gi|170131995|gb|EDT00503.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria IOP40-10] gi|171092878|gb|EDT38130.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MEX-5] gi|171994487|gb|ACB65406.1| flagellar basal-body rod protein FlgG [Burkholderia ambifaria MC40-6] Length = 262 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 107/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++NT T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y +L I +PQ + +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQILPA----ITVPQNAQSLTIGKDGVVSVTQPGSSNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +GV + +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLEAKGENLFAETTSSGAPNVAQPGLNGAGV-LNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|325529016|gb|EGD06029.1| flagellar basal body rod protein FlgG [Burkholderia sp. TJI49] Length = 262 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 106/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAGFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGSLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y +L I +PQ +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQILPA----ITVPQNATSLTIGKDGVVSVTQPGSSNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G R + S P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLEARGENLFSETTSSGAPNVSQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|308050022|ref|YP_003913588.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] gi|307632212|gb|ADN76514.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] Length = 261 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 112/267 (41%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ + Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVSFNDLFYQTQRQPGAMADQQN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G I+T LD A+ G +F +E P G TRDG+F Sbjct: 61 ELPSGLQLGTGVRITGTQKVFTTGDIITTNQPLDLAIMGQGFFQVEQPNGDFAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 DG +V++ G V ++IP+ VG G ++ + + + + L Sbjct: 121 YRNADGLVVTSEGMPLV-----PAVEIPEDALTVTVGSDGIVTAQIAGDAVPQELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + I P + G +K+G LE +N N + EM +MI Sbjct: 176 ANFTNPAGLEAFGNNLYRETAASGVAIEGIPGDAAIG-QLKQGTLEGANVNVVEEMVEMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + ++ + ML+ + + Sbjct: 235 STQRAYEMNAKVVSSTDD-MLKYLNQV 260 >gi|28869144|ref|NP_791763.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. tomato str. DC3000] gi|71735047|ref|YP_275559.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. phaseolicola 1448A] gi|213967579|ref|ZP_03395727.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato T1] gi|257484944|ref|ZP_05638985.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627766|ref|ZP_06460720.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651643|ref|ZP_06482986.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. 2250] gi|298487853|ref|ZP_07005893.1| Flagellar basal-body rod protein flgG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385716|ref|ZP_07234134.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato Max13] gi|302060071|ref|ZP_07251612.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato K40] gi|302134830|ref|ZP_07260820.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302185580|ref|ZP_07262253.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae 642] gi|28852384|gb|AAO55458.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. tomato str. DC3000] gi|71555600|gb|AAZ34811.1| flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. phaseolicola 1448A] gi|213927880|gb|EEB61427.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tomato T1] gi|298157578|gb|EFH98658.1| Flagellar basal-body rod protein flgG [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325096|gb|EFW81165.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. B076] gi|320329355|gb|EFW85348.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. race 4] gi|330866425|gb|EGH01134.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880529|gb|EGH14678.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. glycinea str. race 4] gi|330986471|gb|EGH84574.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011045|gb|EGH91101.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331017022|gb|EGH97078.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 262 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF++ + +F +++ IK Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V + GS +T LD A+ G +F + P G +RDG F Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTVAYSRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMG 159 + +G +V+A+G I +PQ + F VG+ G +S ++I + Sbjct: 121 HLDANGQIVTANGY-----ALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 G + E TP + G T+ + LE+SN +++ E+ M Sbjct: 176 TADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTL-QNTLENSNVSTVEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + +I ++ + +N+ Sbjct: 235 ITTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|330899406|gb|EGH30825.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. japonica str. M301072PT] Length = 262 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 107/268 (39%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF++ + +F +++ IK Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V GS +T LD A+ G +F + P G +RDG F Sbjct: 61 ELPSGLQLGTGVRIVGTQKKFTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMG 159 + +G +V+A+G I +PQ + F VG+ G +S ++I + Sbjct: 121 HLDANGQIVTANGY-----ALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQ 175 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 G + TP + G T+ + LE+SN +++ E+ M Sbjct: 176 TADFINPAGLQAMGGNLYLETGSSGAPQIGTPGLNGLGPTL-QNTLENSNVSTVEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + +I ++ + +N+ Sbjct: 235 ITTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|188592119|ref|YP_001796717.1| flagellar basal body rod protein flgg [Cupriavidus taiwanensis LMG 19424] gi|170938493|emb|CAP63480.1| FlgG: Flagellar basal-body rod protein [Cupriavidus taiwanensis LMG 19424] Length = 261 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 106/268 (39%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F E++ GA+ +D Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEELMYQTIRQPGALSSDQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S + G G+ TG D A+ G +F + P G TRDG F Sbjct: 61 TLPSGMQLGTGVRPVATERIHTQGNPQQTGNAKDVAILGQGFFQVALPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV++SG + I IP +G G +S + + L Sbjct: 121 QVDQNGQLVTSSGF-----VIQPAITIPANTLSMTIGRDGTVSVTQPGSSANVQVGQLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + +GV V++ ++E SN N + E+ MI Sbjct: 176 ATFMNPAGLESMGENLYVQTDASGAPNTTVPGLNGAGV-VQQNYVEASNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVQASDQ-MLQRLAQLG 261 >gi|288940411|ref|YP_003442651.1| flagellar basal-body rod protein FlgG [Allochromatium vinosum DSM 180] gi|288895783|gb|ADC61619.1| flagellar basal-body rod protein FlgG [Allochromatium vinosum DSM 180] Length = 263 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 114/266 (42%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + I A + R+S V++N++N +T GF+ + F +++ GA Sbjct: 1 MNQALWIAKTGLDAQQTRMSVVSNNLANVNTTGFKKGRAVFEDLIYHSCRQHGAQATQET 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q S + G + G++I TG LD A+EG +F + P G I TRDG F Sbjct: 61 QLPSGLTIGTGVRTVATQKLFAQGNYIQTGNSLDMAIEGQGFFQILMPGGEIGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKV-IATMGL 160 ++ DG +V ++G + IP E +G+ G +S Q G+V I + L Sbjct: 121 QLNADGEVVMSNGY-----ALQPALVIPADAESITIGKDGTVSIKQPNQVGEVQIGQIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + P E+ G ++ + LE SN N E+ MI Sbjct: 176 ANFINPAGLQPIGENLFRETTASGAPQQSNPGENGFG-SLVQCSLETSNVNMAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + I + SML+ + N Sbjct: 235 ETQRAYEVNSKAISAAD-SMLQFVNN 259 >gi|261856358|ref|YP_003263641.1| flagellar basal-body rod protein FlgG [Halothiobacillus neapolitanus c2] gi|261836827|gb|ACX96594.1| flagellar basal-body rod protein FlgG [Halothiobacillus neapolitanus c2] Length = 262 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 110/262 (41%), Gaps = 31/262 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-------- 55 + I A + R+S +++N++N +T GF+ + F +++ + Sbjct: 5 ALWIAKTGLDAQQTRMSVISNNLANVNTTGFKQDRAVFEDLIYQNYRQVGAANTQQNEVP 64 Query: 56 -----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 + V + G+ ++T LD A+ G +F + P G + TRDG F + Sbjct: 65 TGLNIGTGVKVVATEKNHTQGNLVTTNNALDLAINGRGFFQVLQPDGSVAYTRDGSFSLD 124 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSV 163 +G +V+A+G YP+ I +PQ + VG+ G +S + + T+ L Sbjct: 125 SNGQVVTANG-YPLQPA----ITVPQGAQSITVGKDGTVSVQLAGQAQPSQVGTIDLADF 179 Query: 164 DMSQGFVRRENSGI----SPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQ 218 G ++ S P T L+GV +++G LE SN N + E+ MI + Sbjct: 180 VNPAGLQPIGDNLFLESGSSGAPQTSTPGLNGVGNMQQGMLESSNVNVVEELVSMIETQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + + I SML+ + Sbjct: 240 AYEMNSKAISATS-SMLQTLNQ 260 >gi|254516991|ref|ZP_05129049.1| flagellar basal-body rod protein FlgG [gamma proteobacterium NOR5-3] gi|219674496|gb|EED30864.1| flagellar basal-body rod protein FlgG [gamma proteobacterium NOR5-3] Length = 261 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 107/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + ++ST+A+N++N T GF+ + F +++ + + S Sbjct: 1 MNQSLWISKTGLDAQQTKMSTIANNLANVGTTGFKRGRAIFEDLIYQNVRQVGSQSSQDT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ G+ T + LD A++G +F + P G TRDG F Sbjct: 61 LLPSGLQIGTGTRVVATEKLFTQGNLTKTDSALDIAIQGRGFFEILLPDGNQAFTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ D G +V+++G PI +PQ + G +S + I + L Sbjct: 121 QINDQGIVVTSAGYQV-----QPPITVPQDALSVTIANDGTVSVQQPGTAASTQIGLVQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G R + P P + G T+ +G++E SN N + E+ MI Sbjct: 176 TDFINPSGLQARGENLFLESGASGAPQPGNPGLNGLG-TLSQGYVESSNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ + N+ Sbjct: 235 ETQRAYEMNSRAISTADQMLQYISNNL 261 >gi|261886055|ref|ZP_06010094.1| flagellar basal body rod protein FlgG [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 262 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 110/266 (41%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S +A + ++ T + N++N +T+G++ + +F++++ S Sbjct: 1 MIRSLYTAATGMVAQQTQIDTTSHNIANVNTIGYKKNRAEFADLMYQTMQYAGTPTSTTT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G + G F TG LD + G+ +F ++ P G TR+G F Sbjct: 61 MSPTGMEVGLGVRPTAITKVFGQGYFKETGNNLDMVIAGNGFFQIQLPDGTTAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K+ DGS+V++ G Y +L + IP +VG G +S Q+ I + L Sbjct: 121 KLDGDGSIVNSDG-YRLLPE----MNIPADATQISVGVDGTVSVLQPGNQEMTQIGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 + G ++ +G T +K+GF+E SN + EM +I Sbjct: 176 ANFINPSGLHAMGDNNFLETAASGAPNIGNGGTDGFGQIKQGFVEMSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML+ + + Sbjct: 236 GQRAYEANSKAITTADE-MLQTVNQL 260 >gi|306846278|ref|ZP_07478839.1| flagellar basal-body rod protein FlgG [Brucella sp. BO1] gi|306273273|gb|EFM55142.1| flagellar basal-body rod protein FlgG [Brucella sp. BO1] Length = 262 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +F++++ + N +Q Sbjct: 1 MKALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQA 60 Query: 56 I----SFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I + V G + + GSF TG D AL G WF ++SP G + TR G F Sbjct: 61 IVPEGALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 DG LV+ G PV I IP + + G++ K + + + L Sbjct: 121 NKNADGQLVTLDGN-PVEPA----ITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 176 ANFTNEAGLEPLGGNLYRETEASGSPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 235 TAQRAYEMNSKVIQAADEMAATVSKNL 261 >gi|42522133|ref|NP_967513.1| flagellar biosynthesisprotein [Bdellovibrio bacteriovorus HD100] gi|39574664|emb|CAE78506.1| Flagellar biosynthesisprotein [Bdellovibrio bacteriovorus HD100] Length = 271 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 31/268 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------------- 47 L+ +A +L T+A+N++N +T F+ + F E + A Sbjct: 4 KGVYTALSGAMAQSTKLDTIANNLANVNTPAFKRDQQLFQEYLTANEKMPETTQIPRDVA 63 Query: 48 ----IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRD 103 N S+V + + G TG LD A++G +F + +P G+ LTR Sbjct: 64 AIESFYNMQGGDKSYVDTKGTFTDFSQGGLKPTGNSLDVAIDGKGFFEIATPGGVKLTRS 123 Query: 104 GRFKVTDDGSLVSASGKYPVL-------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G F + G LV+ G YPVL D A I+ + + + G++ + + + Sbjct: 124 GNFTLDGSGQLVTKEG-YPVLRQGEAGSDPAGRVIRF-TGNGAVAIADNGDVYEGTENLG 181 Query: 157 TMGLYSVDMSQGFVRRENSGIS--PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L +V+ + +S + PNI P +++++ ++K+GFLE SN N + EM MI Sbjct: 182 KLSLVNVNNPDSLQKTGSSLYTFKPNIAPD-MQNIANPSLKQGFLETSNVNIVQEMTDMI 240 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + F S I ++ + I + Sbjct: 241 STNRVFESTQKAISAYDQMADKMINVVG 268 >gi|285018207|ref|YP_003375918.1| flagellar basal-body rod protein flgg [Xanthomonas albilineans GPE PC73] gi|283473425|emb|CBA15930.1| probable flagellar basal-body rod protein flgg [Xanthomonas albilineans] Length = 261 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 103/266 (38%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + R+S V++N++NT T GF+ + F +++ + Sbjct: 1 MNQALWVAKTGMDAQQTRMSVVSNNLANTSTTGFKRDRASFEDLLYQQRRQPGGASSSQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V E GS TG LD + G + ++ P G TRDG Sbjct: 61 QLPSGLQLGTGVRVVATSKDFEQGSQQQTGRALDVMVNGRGFLEVQMPDGTSAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V G LV+ SG IQIP+ + +G G +S + + ++ L Sbjct: 121 QVNAQGQLVTNSGY-----AIQPGIQIPEGAQSLTIGNDGTVSVQVPGSAAALQVGSLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + P TP + G TV +G LE SN N + E+ MI Sbjct: 176 TDFINPSGLQATGQNLYVETAASGPAQSGTPGLNGLGTTV-QGALEGSNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + I + +ML + N Sbjct: 235 ETQRAYEMNAKAISTTD-AMLGYLNN 259 >gi|289679021|ref|ZP_06499911.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. syringae FF5] gi|330972416|gb|EGH72482.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. aceris str. M302273PT] Length = 262 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 108/268 (40%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF++ + +F +++ IK Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V + GS +T LD A+ G +F + P G +RDG F Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMG 159 + +G +V+A+G I +PQ + F VG+ G +S ++I + Sbjct: 121 HLDANGQIVTANGY-----ALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQ 175 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 G + TP + G T+ + LE+SN +++ E+ M Sbjct: 176 TADFINPAGLQAMGGNLYLETGSSGAPQIGTPGLNGLGPTL-QNTLENSNVSTVEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + +I ++ + +N+ Sbjct: 235 ITTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|330445349|ref|ZP_08309001.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489540|dbj|GAA03498.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 249 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N +T GFR + + + F Sbjct: 1 MDRALYLAMSGAKQDMYGMQVHANNLANVNTTGFRADLQQARSM--QAYGEGMPSRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + GS I+TG +LD A++GD W A+ +G TR G K+ G L +++G Sbjct: 59 AERPGNDFAQGSVINTGRDLDVAIQGDGWLAVMDAKGQEAYTRAGHLKIDQTGMLQNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + +L PI IP +G+ G +S + V+ + L SVD Q + Sbjct: 119 QL-LLGQNDSPIFIPLPISKIEIGKDGTVSVLPQGAPPDAMAVVDRIKLVSVDN-QALFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + P++ + VT+ +G LE SN N++ EM MI L + F L+ E Sbjct: 177 DTDGLFKLTGDRIPMDADANVTLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|77457729|ref|YP_347234.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens Pf0-1] gi|77381732|gb|ABA73245.1| flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1] Length = 261 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 106/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF+ + +F +++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + GS +T LD A++G +F + P G TRDG F Sbjct: 61 ELPSGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDMAIDGRGFFQILQPDGTTSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G +V+ASG I IP + F VG G +S +VI + Sbjct: 121 HLDSNGQIVNASGF-----ALEPAIVIPNNAQTFTVGRDGTVSITVAGNPAAQVIGNLQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ TP + G T+ + LE SN +++ EM MI Sbjct: 176 ADFINPAGLQAVGNNLFLETAASGAPQVGTPGLNGFGTTL-QNTLETSNVSTVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQNL 261 >gi|89075496|ref|ZP_01161907.1| putative flagellar basal-body rod protein FlgF [Photobacterium sp. SKA34] gi|89048768|gb|EAR54339.1| putative flagellar basal-body rod protein FlgF [Photobacterium sp. SKA34] Length = 249 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 14/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALYLAMSGAKQDMYGMQVHANNLANVSTTGFRADLQQARSM-QAYGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + GS I+TG +LD A+EGD W A+ +G TR G K+ G L +++G Sbjct: 59 AERPGNDFAQGSVINTGRDLDVAVEGDGWLAVMDVKGQEAYTRAGHLKIDQTGMLQNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI IP +G+ G +S + V+ + L D Q + Sbjct: 119 QL-VLGQNDSPIFIPLPISKIEIGKDGTVSVLPQGAPPDAIAVVDRIKLVKPDN-QALFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + PL+ + VT+ +G LE SN N++ EM MI L + F L+ E Sbjct: 177 DTDGLFKSIGERIPLDADASVTLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAE 236 Query: 232 KSMLEAIRNI 241 + M +A ++ Sbjct: 237 E-MDKASSSL 245 >gi|237799211|ref|ZP_04587672.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. oryzae str. 1_6] gi|330961201|gb|EGH61461.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. maculicola str. ES4326] gi|331022066|gb|EGI02123.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. oryzae str. 1_6] Length = 262 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF++ + +F +++ IK Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V + GS +T LD A+ G +F + P G +RDG F Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTVAYSRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMG 159 + +G +V+A+G I +PQ + F VG+ G +S ++I + Sbjct: 121 HLDANGQIVTANGY-----ALEPAIVVPQAAQTFTVGQDGTVSVTLAGATATPQIIGNIQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 G + E TP + G T+ + LE+SN +++ E+ M Sbjct: 176 TADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTL-QNTLENSNVSTVEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + +I ++ + +N+ Sbjct: 235 ITTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|304310887|ref|YP_003810485.1| Flagellar basal-body rod protein [gamma proteobacterium HdN1] gi|301796620|emb|CBL44832.1| Flagellar basal-body rod protein [gamma proteobacterium HdN1] Length = 261 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I + A + RLST+++N++N T GF+ F +++ ++ Sbjct: 1 MNAALWISKSGLSAQDLRLSTISNNLANVSTTGFKRDIAVFQDLLYQVQRQPGGQSSQDT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V + G+ +TG LD A+ G +F + P G I TRDG F Sbjct: 61 QLPSGLQVGTGVKTVATKKQHTEGTIQTTGQALDVAIMGRGFFQVLMPDGAIAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKV-----IATMGL 160 +++ +G LV+A G I +P+ + +G G ++ G+ I + L Sbjct: 121 QLSAEGDLVTAEGL-----SLEPAINVPEGSQSVTIGNDGTVTAVDGQTKQQIEIGNIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + RE P D +G T+++ LE SN N + E+ MI Sbjct: 176 ADFVNPAGLESVGSNLYRETVASGAPTEAQPGTDGTG-TLQQNALEASNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 ETQRAYEMNSKVISTVDQMLSYVGQQL 261 >gi|303328382|ref|ZP_07358820.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] gi|302861712|gb|EFL84648.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. 3_1_syn3] Length = 264 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 117/260 (45%), Gaps = 23/260 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 MQ + GL L E R++ +A+N++N +T G++ + F + + + +D Sbjct: 1 MQDALFSGLFGALTTEHRMNFIANNLANVNTHGYKRDTLAFKDTMASYAHDEIREPLMNL 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRD 103 + ++ + GS TG LD A+ G +A+F + +P G LTR+ Sbjct: 61 RSAPLFPEPKNMARPRVAVSKIDFSQGSMQFTGDPLDVAINGENAFFRVTTPNGDYLTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F ++ DG++++ G YP+ + IP +G G++ G V+ + L +V Sbjct: 121 GHFLLSGDGTVMTPQG-YPLQGTGGN-VVIPAGTRNVLIGGDGQVIADGAVVNQIALINV 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D Q + ++ P E + G +++GF E +N + EM MI + ++F Sbjct: 179 DDPQNLEKLGHNLFRPREKVAVAEGDAYLAGARLEQGFAEAANVQVVTEMVNMIEVQRQF 238 Query: 221 NSITTLIDENEKSMLEAIRN 240 + ++ ++ S+ A Sbjct: 239 EAYQKVMQSSD-SLDRAANE 257 >gi|298529926|ref|ZP_07017328.1| flagellar basal-body rod protein FlgG [Desulfonatronospira thiodismutans ASO3-1] gi|298509300|gb|EFI33204.1| flagellar basal-body rod protein FlgG [Desulfonatronospira thiodismutans ASO3-1] Length = 260 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------KND 51 M S A + + ++N++N +T GF+ + +F +++ D Sbjct: 1 MMRSLWTAATGMAAQQMNIDVTSNNLANVNTDGFKKSQAQFEDLMYQTLKVAGTENLTGD 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V G LS G + TG LD +EGD +F + + + TR G FK Sbjct: 61 RVPTGLQVGMGTNPLSVHKIFTQGDYKQTGNPLDLTIEGDGFFQVMANDEVRYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI--ATMGLYS 162 DG +V+A+G YP+ IP+ +V E+G I VI + +Y Sbjct: 121 PDQDGRIVTANG-YPLQPEF----HIPEDTARVHVDEQGNIVCVDGDDNVIAEGEIPIYR 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + E P P E+ G +++ G LE SN + EM MI Sbjct: 176 FMNPAGLNSAGRNLYSETEASGPATEGVPGEENFG-SIRSGALESSNVEIVDEMVNMIIG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ ML+ + Sbjct: 235 QRAYEINSKAIQTSDQ-MLQMANQM 258 >gi|271500068|ref|YP_003333093.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech586] gi|270343623|gb|ACZ76388.1| flagellar basal-body rod protein FlgG [Dickeya dadantii Ech586] Length = 260 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G +S E G TG D A+ G +F + P G TRDG F Sbjct: 61 TLPSGLQLGTGVRPVSTERIHTQGGLTETGNAKDLAINGAGFFQVLMPDGTTQYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 ++ +G LV++SG I IP VG G ++Q+G+ + + L Sbjct: 121 QLDSNGQLVTSSGFQV-----QPAITIPANATNITVGRDGVVTVTQQGQTAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + TP + +G+ + + ++E SN N E+ MI Sbjct: 176 AMFINEAGLQNMGENLYAETASSGAPTQSTPGLNGAGL-IMQKYVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + + + Sbjct: 235 QTQRAYEINSKAISSTDQMLQKLTQ 259 >gi|116694221|ref|YP_728432.1| flagellar basal body rod protein FlgG [Ralstonia eutropha H16] gi|113528720|emb|CAJ95067.1| flagellar basal body rod protein [Ralstonia eutropha H16] Length = 261 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 105/268 (39%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F E++ GA+ +D Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEELMYQTIRQPGALSSDQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S + G G+ TG D A+ G +F + P G TRDG F Sbjct: 61 TLPSGMQLGTGVRPVATERIHTQGNPQQTGNAKDVAILGQGFFQVALPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV++SG + I IP + G +S + + L Sbjct: 121 QVDQNGQLVTSSGF-----VIQPAITIPANTLSMTIARDGTVSVTQPGSSANVQVGQLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + +GV V++ ++E SN N + E+ MI Sbjct: 176 ATFMNPAGLESMGENLYVQTDASGAPNTTVPGLNGAGV-VQQNYVEASNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVQASDQ-MLQRLSQLG 261 >gi|293414371|ref|ZP_06657020.1| flagellar basal-body rod protein FlgG [Escherichia coli B185] gi|291434429|gb|EFF07402.1| flagellar basal-body rod protein FlgG [Escherichia coli B185] Length = 260 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISLLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|307731361|ref|YP_003908585.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1003] gi|307585896|gb|ADN59294.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1003] Length = 262 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 99/261 (37%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG + I +P +G G + S + + TM L Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITVPSNATSLTIGSDGAVSISVAGSTNTQQLGTMQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETASSGAPNVAQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQ 255 >gi|163738061|ref|ZP_02145477.1| hypothetical protein RGBS107_06604 [Phaeobacter gallaeciensis BS107] gi|161388677|gb|EDQ13030.1| hypothetical protein RGBS107_06604 [Phaeobacter gallaeciensis BS107] Length = 238 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ Q L + + VA+N++N+ T G+R V FSE + + + +S Sbjct: 1 MGDTGYTTLSRQSGLMREMRVVANNIANSATTGYRAEGVIFSEFIQSAPGQ--ESLSMGR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G+ +G +LD A+EGD +F +E+P G LTR G F G LV+ G Sbjct: 59 ANIRNTSMAQGALTQSGGDLDLAIEGDGYFMVETPMGERLTRSGAFSTNAQGDLVTMDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD P+ IP + G G +S G+ + +G++ + + +R + + Sbjct: 118 HRVLDAGRAPVFIPGDAKSIKFGADGTLSADGRALGQIGIFKPEENYQMIREDGVMFRVD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +ED V +GFLE SN N++ ++ +M+ + + + + ++ ++ + AI+N Sbjct: 178 GE---IEDAGDARVLQGFLEGSNVNAISQLARMVEIQRAYEMGQSFLETEDQRVRNAIKN 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|90415316|ref|ZP_01223250.1| flagellar basal-body rod protein FlgG (distal rod protein) [marine gamma proteobacterium HTCC2207] gi|90332639|gb|EAS47809.1| flagellar basal-body rod protein FlgG (distal rod protein) [marine gamma proteobacterium HTCC2207] Length = 261 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 114/267 (42%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + R+S +++N++N +T GF+ + F +++ ++ Sbjct: 1 MDASLWIAKTGLTAQQTRMSVISNNLANVNTTGFKKDRAVFEDLLYQNIVPAGGQVDAES 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ I+T LD A+ GD +F+++ G +RDG F Sbjct: 61 ETPTGLMLGTGTRVVATEKLHAQGNIITTENALDLAISGDGYFSVQQADGTIAYSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 K++ +G+LV+A G+ + I +PQ +G G ++ + I + L Sbjct: 121 KLSAEGNLVTAGGQTLL-----PAITVPQNAASLTIGRDGVVTVELSNGGGSSQIGQLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + ++ + + P D +G+ + +G LE SN N + EM MI Sbjct: 176 SRFVNNSGLQPIGRNLMQQTNASGDPLVVLPGADGAGM-LMQGALEASNVNVVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + + N+ Sbjct: 235 ETQRAYEVNSKAISAADGMLRFLNNNL 261 >gi|146281773|ref|YP_001171926.1| flagellar basal body rod protein FlgG [Pseudomonas stutzeri A1501] gi|145569978|gb|ABP79084.1| flagellar basal-body rod protein FlgG [Pseudomonas stutzeri A1501] Length = 261 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF+ + +F +++ I+ Sbjct: 1 MLPALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSSQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQLGTGVRVTGTQKIFTTGSLQTTEQPLDMAINGRGFFQVLLPDGTVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG +V+++G I +P + + F VGE G +S + ++I + Sbjct: 121 HLDSDGQVVTSNGY-----ALEPAIVVPAETQTFTVGEDGTVSVTTLGNAQPQIIGNIQT 175 Query: 161 YSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G ++ + P G+ TV + LE+SN + + E+ MI Sbjct: 176 ADFINPAGLQAMGSNLFLETAASGAPQVSTPGLNGLGTVLQNTLENSNVSVVEELVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 236 TQRAYEMNSKVISTADQMLSFVTQQL 261 >gi|15639945|ref|NP_219398.1| flagellar basal-body rod protein (flgG-2) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026184|ref|YP_001933956.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|3323282|gb|AAC65916.1| flagellar basal-body rod protein (flgG-2) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018759|gb|ACD71377.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|291060316|gb|ADD73051.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 271 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 34/271 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + + A ++RL +A N++N DT ++ F E++ ND Sbjct: 1 MIRGWYTAASGMSAQQRRLDAIAQNLANVDTTSYKRDVAVHKSFPELLLRRVNDDGVVKN 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + V + + E GS T + D ALEG +F + +P+G T Sbjct: 61 PFGSSDVSPIVGKLGLGVEVNELFTEFEQGSLKQTQSPSDIALEGMGFFVIRTPQGEEYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGK 153 R+G F V +G L++ +G YPVL + ++ + + + GEI G Sbjct: 121 RNGNFLVGVEGYLMTKNG-YPVLGENGP---LFLQERYYTINQNGEIYVRPIDRPDVDGF 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPN---IPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + + + + + ++ P E +GF+E SN N + EM Sbjct: 177 FLDRLKIVTFENVRYLQKKGADTYMQTPVSGAPIAAEGPERPAAVQGFVEASNVNVVNEM 236 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +MI + + + + I + M + Sbjct: 237 VRMIEVNRAYEANQKTIQAEDGMMGRLWNEV 267 >gi|153834448|ref|ZP_01987115.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156973589|ref|YP_001444496.1| flagellar basal body rod protein FlgG [Vibrio harveyi ATCC BAA-1116] gi|269961601|ref|ZP_06175963.1| flagellar basal-body rod protein FlgG [Vibrio harveyi 1DA3] gi|148869144|gb|EDL68176.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156525183|gb|ABU70269.1| hypothetical protein VIBHAR_01292 [Vibrio harveyi ATCC BAA-1116] gi|269833642|gb|EEZ87739.1| flagellar basal-body rod protein FlgG [Vibrio harveyi 1DA3] Length = 262 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++T+++N++N TVG++ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G+LV++ YPV I IP+ VG GE+S Q V+ + + Sbjct: 121 TLDGEGTLVTSGSGYPVEPE----IVIPEDAISITVGTDGEVSVRIRGEQNNVVVGQLTI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ +++ LE SN N E+ MI Sbjct: 177 TDFVNPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISSVDKMM 255 >gi|319403961|emb|CBI77549.1| Flagellar basal-body rod protein flgG [Bartonella rochalimae ATCC BAA-1498] gi|319406976|emb|CBI80613.1| Flagellar basal-body rod protein flgG [Bartonella sp. 1-1C] Length = 264 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 108/267 (40%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQK 55 S +I A + L +A+NM+N +T GF+ + +F++++ + N ++Q Sbjct: 3 MKSLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGVPNMLNQA 62 Query: 56 I--------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V + G+F+ TG LD A+ G+ WF ++ P G + TR G F Sbjct: 63 VIPEGAMIGMGVRTAAVRTINTQGAFVQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAF 122 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +++ G +V+ G I IP + V G + L Sbjct: 123 NLSETGQIVTLEGNLV-----QPVITIPIGSKNVTVSPDGTVYYQTDTDPNAVEAGRFRL 177 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE +P P ED G ++ + LE SN + + EM ++I Sbjct: 178 VNFVNEVGLEPIGDNLFRETQASGAPVPGDPKEDGYG-SIMQAMLEASNVDPVKEMTELI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ +N+ Sbjct: 237 AAQRSYEMNSKVIQASDEMAAVVSKNL 263 >gi|154710440|gb|ABS84283.1| FlgG-2 [Treponema paraluiscuniculi] Length = 271 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 104/271 (38%), Gaps = 34/271 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + + A + RL +A N++N DT ++ F E++ ND Sbjct: 1 MIRGWYTAASGMSAQQHRLDAIAQNLANVDTTSYKRDVAVHKSFPELLLRRVNDDGVVKN 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + V + + E GS T + D ALEG +F + +P+G T Sbjct: 61 PFGSSDVSPIVGKLGLGVEVNELFTEFEQGSLKQTQSPSDIALEGMGFFVIRTPQGEEYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGK 153 R+G F V +G L++ +G YPVL + ++ + + + GEI G Sbjct: 121 RNGNFLVGVEGYLMTKNG-YPVLGENGP---LFLQERYYTINQNGEIYVRPIDRPDVDGF 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPN---IPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + + + + + ++ P E +GF+E SN N + EM Sbjct: 177 FLDRLKIVTFENVRYLQKKGADTYMQTPVSGAPIAAEGPERPAAVQGFVEASNVNVVNEM 236 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +MI + + + + I + M + Sbjct: 237 VRMIEVNRAYEANQKTIQAEDGMMGRLWNEV 267 >gi|163856437|ref|YP_001630735.1| flagellar basal body rod protein FlgG [Bordetella petrii DSM 12804] gi|163260165|emb|CAP42467.1| flagellar basal-body rod protein FlgG [Bordetella petrii] Length = 261 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 99/266 (37%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + + +++N++N T GF+ + F +++ ++ Sbjct: 1 MMRSLWIAKTGLEGQQTSMDVISNNLANVQTNGFKRGRAIFQDLMYQTLRQPGAQVGDAN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G+ +TG+ELD A++G + ++ P G TRDG Sbjct: 61 QLPTGLQLGTGVRVASTERVFTQGNLNNTGSELDIAIDGKGFLQVDLPDGTQAYTRDGTL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------GKVIATMG 159 +V +G L +A G + PI +P +G+ G +S I + Sbjct: 121 QVDQNGQLTTAGGY-----VIQPPINVPDNALSLTIGKDGTVSVTQPGAAGLNVQIGQLQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L + G + E P P D +G +++ ++E SN N E+ M Sbjct: 176 LATFINPPGLQSVGENLYLETDSSGPANILQPGIDGAGSILQQ-YVETSNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + +++ + + Sbjct: 235 ITTQRAYEMNSKAVKTSDEMLARLTQ 260 >gi|219685599|ref|ZP_03540415.1| flagellar hook-basal body complex protein [Borrelia garinii Far04] gi|219672877|gb|EED29900.1| flagellar hook-basal body complex protein [Borrelia garinii Far04] Length = 282 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 110/284 (38%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A +L V++N++N D VG++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERHKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +T LD AL +F +++ G T Sbjct: 61 PKGHLETAPIVGKLGTGVEENEIYTLFEQGPLKTTSNPLDLALTDQGFFVIQTSYGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------- 152 R+G F + +G LV+ SG +PVL I K F + +G+I Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQIFHNSSFESNPKRL 176 Query: 153 -----------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 +++ T+ + + + + ++ NS +++ ++ G Sbjct: 177 VSEHENSWKNYELLDTIRIVNFENPRFLKKQGNSLWVDTKTSGKAQEIDISLRPKIETGA 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|91794993|ref|YP_564644.1| flagellar basal-body rod FlgG [Shewanella denitrificans OS217] gi|91716995|gb|ABE56921.1| Flagellar basal-body rod FlgG [Shewanella denitrificans OS217] Length = 261 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ ++ ++ Sbjct: 1 MQSALWVSKTGLAAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDELN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G +T +LD A+EG+ +F +E P G + TRDG+F Sbjct: 61 QLPSGLQLGTGTRVAGTQKVFTTGDVHNTSQQLDLAIEGNGFFQVEEPNGDLAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + +G +V++ G V I IP+ + G + + + + + L Sbjct: 121 YRSSEGMMVTSQGLPLV-----PNIVIPEDSTNITIATDGIVMATIAGDAEPQELGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G R N+ +E ++G +++G LE SN N + EM +MI Sbjct: 176 INFTNPAGLEARGNNLYRETAASGVAVEGVAGDQALGGLRQGSLEGSNVNVVEEMVEMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ ML+ + Sbjct: 236 TQRAYEMNAKVVSASDD-MLKFLNQ 259 >gi|70729006|ref|YP_258740.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens Pf-5] gi|68343305|gb|AAY90911.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens Pf-5] Length = 261 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+ +++N++N T GF+ + +F +++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V + GS +T LD A+ G +F + P G TRDG F Sbjct: 61 ELPTGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDLAINGRGFFQILQPDGTTAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+ASG + +P + F VG+ G +S +VI + Sbjct: 121 HLNSDGQIVTASGF-----ALEPAVVVPNDAQTFTVGQDGTVSITIAGNPASQVIGNLQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + N+ TP + G T+ + LE SN +++ EM MI Sbjct: 176 ADFINPAGLQAQGNNLFLETAASGAPQIGTPGLNGFGTTL-QNTLEASNVSTVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 TTQRAYEMNSKVISTADQMLSFITQKL 261 >gi|209521591|ref|ZP_03270289.1| flagellar basal-body rod protein FlgG [Burkholderia sp. H160] gi|209497974|gb|EDZ98131.1| flagellar basal-body rod protein FlgG [Burkholderia sp. H160] Length = 262 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 99/261 (37%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGAGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG + I IP +G G + S + + TM L Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITIPTNATSLTIGSDGSVSITVAGSSNTQQLGTMQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETASSGAPNVSQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQ 255 >gi|73539452|ref|YP_299819.1| flagellar basal body rod protein FlgG [Ralstonia eutropha JMP134] gi|72122789|gb|AAZ64975.1| Protein of unknown function DUF1078 [Ralstonia eutropha JMP134] Length = 261 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 105/268 (39%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + ++ +++N++N T GF+ + F +++ GA+ +D Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTNGFKRGRAVFEDLMYQNIRQPGALSSDQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S + G G+ TG D A+ G +F + P G TRDG F Sbjct: 61 TLPSGLQLGTGVRPVATERIHTQGNPQQTGNSKDVAIIGQGFFQVAMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V +G LV++SG + I IP V G +S + + L Sbjct: 121 QVDQNGQLVTSSGF-----VIQPAITIPANTTSMTVARDGTVSVTQPGSSNNVQVGQLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + +GV +++ ++E SN N + E+ MI Sbjct: 176 ATFMNPAGLESMGENLYVQTDASGAPNTTVPGLNGAGV-LQQNYVEASNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVQTSDQ-MLQRLTQMG 261 >gi|117926380|ref|YP_866997.1| flagellar basal body rod protein [Magnetococcus sp. MC-1] gi|117610136|gb|ABK45591.1| flagellar basal body rod protein [Magnetococcus sp. MC-1] Length = 269 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 31/269 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M + + E RLST+A+N++N +T G++ ++ F + + ++ Sbjct: 1 MDSGVYAAVNGARRTELRLSTLANNLANVNTTGYKEDRLTFESFMTSPGPELHPLPTDDF 60 Query: 55 ---------------------KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE 93 ++++ + + + + G+ T L A+EG+ +F L Sbjct: 61 MGMRGPGDIPFPFSNPSSNAYRMTYPVAFETEVDVQQGALHGTNNPLHVAIEGEGFFVLN 120 Query: 94 SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 P G TRDG F+V + G LVS G Y VL PI + D N+ G ++ G+ Sbjct: 121 GPDGRRYTRDGSFEVNNVGELVSKDG-YQVLGPGGEPIVV--GDGPVNIAPDGFVTSNGE 177 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + T+ + Q +N +P P+ D + V +GFLE SN+N + M QM Sbjct: 178 EVGTIARVKLPSEQLDKVGQNQYKAPQDLEVPV-DAAQAQVHQGFLEGSNSNPIRAMTQM 236 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIA 242 I + + +I + +A+ I Sbjct: 237 IEAQRAYEMHIKMIQNLDNLDDQAVNRIG 265 >gi|188534168|ref|YP_001907965.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99] gi|188029210|emb|CAO97082.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99] Length = 260 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T + D A+ G +F+++ P G TRDG F Sbjct: 61 TLPSGLQIGTGTRPVATERLHNQGNLSQTDSSKDVAINGQGFFSVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 + +G LV+ +G +PV I IP + G +S + + + L Sbjct: 121 QTDQNGQLVTNAG-FPVQPA----IVIPPNSLSMTISRDGVVSVTQQGQANPVQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E P + +G T+ +G++E SN N E+ MI Sbjct: 176 STFINDAGLSSMGENLYQETQASGAPNESNPGNNGAG-TLYQGYVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEINSKAISTSDQMLAKLTQ 259 >gi|90579910|ref|ZP_01235718.1| putative flagellar basal-body rod protein FlgF [Vibrio angustum S14] gi|90438795|gb|EAS63978.1| putative flagellar basal-body rod protein FlgF [Vibrio angustum S14] Length = 249 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 14/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALYLAMSGAKQDMYGMQVHANNLANVSTTGFRADLQQARSM-QAYGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + GS I+TG +LD A+EGD W A+ +G TR G K+ G L +++G Sbjct: 59 AERPGNDFAQGSVINTGRDLDVAVEGDGWLAVMDVKGQEAYTRAGHLKIDQTGMLQNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI IP +G+ G +S + V+ + L D Q + Sbjct: 119 QL-VLGQNDSPIFIPLPISKIEIGKDGTVSVLPQGAPPDAMAVVDRIKLVKPDN-QALFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + PL+ + VT+ +G LE SN N++ EM MI L + F L+ E Sbjct: 177 DTDGLFKSIGERIPLDADASVTLAKGMLEGSNVNAVSEMTSMIDLQRHFEMQVKLMKTAE 236 Query: 232 KSMLEAIRNI 241 + M +A ++ Sbjct: 237 E-MDKASSSL 245 >gi|28897555|ref|NP_797160.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus RIMD 2210633] gi|91225875|ref|ZP_01260844.1| polar flagellar FlgG [Vibrio alginolyticus 12G01] gi|153839683|ref|ZP_01992350.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|254230138|ref|ZP_04923533.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|260364613|ref|ZP_05777215.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|260878282|ref|ZP_05890637.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|260898112|ref|ZP_05906608.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|260901956|ref|ZP_05910351.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|262394937|ref|YP_003286791.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|269965422|ref|ZP_06179541.1| flagellar basal-body rod protein FlgG [Vibrio alginolyticus 40B] gi|5361010|gb|AAD42917.1|U12817_11 polar flagellar FlgG homolog [Vibrio parahaemolyticus] gi|28805767|dbj|BAC59044.1| polar flagellar FlgG [Vibrio parahaemolyticus RIMD 2210633] gi|91189525|gb|EAS75801.1| polar flagellar FlgG [Vibrio alginolyticus 12G01] gi|149746793|gb|EDM57781.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|151937331|gb|EDN56194.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|262338531|gb|ACY52326.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|269829901|gb|EEZ84131.1| flagellar basal-body rod protein FlgG [Vibrio alginolyticus 40B] gi|308086113|gb|EFO35808.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|308090170|gb|EFO39865.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|308106768|gb|EFO44308.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|308115105|gb|EFO52645.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|328473451|gb|EGF44299.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus 10329] Length = 262 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 111/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++T+++N++N TVG++ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNIATISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G+LV++ YPV I IP+ VG GE+S Q +V+ + + Sbjct: 121 TLNGEGTLVTSGSGYPVEPE----IVIPEDAISITVGTDGEVSVRVRGQQDNQVVGQLTI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ +++ LE SN N E+ MI Sbjct: 177 TDFVNPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISSVDKMM 255 >gi|253990125|ref|YP_003041481.1| flagellar basal-body rod protein flgg [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781575|emb|CAQ84738.1| flagellar basal-body rod protein flgg (distal rod protein) [Photorhabdus asymbiotica] Length = 260 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 96/264 (36%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + + +A+N++N T GF+ + F +++ Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMSSEQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ T A+ G +F ++ P G TRDG F Sbjct: 61 RLPSGLQIGTGVRPVATERIHSQGNLSGTNNNHHVAIRGKGFFQVQLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G LV+A+G I IP + G +S K + + L Sbjct: 121 QEDQNGQLVTANGFLVF-----PTITIPDNATDIAISSDGVVSVKVQGQSAPQQVGQFTL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + + P+E+ G+ ++ +LE SN N E+ MI Sbjct: 176 TTFINENGLESIGENLYVETSSSGVPIENTPGINGAGLLQHKYLETSNVNIAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 236 TQRAYEVNSKAVSTSDQMLQKLTQ 259 >gi|15639944|ref|NP_219397.1| flagellar basal body rod protein FlgG [Treponema pallidum subsp. pallidum str. Nichols] gi|189026183|ref|YP_001933955.1| flagellar basal body rod protein FlgG [Treponema pallidum subsp. pallidum SS14] gi|3323281|gb|AAC65915.1| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018758|gb|ACD71376.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] gi|291060315|gb|ADD73050.1| flagellar basal-body rod protein FlgG [Treponema pallidum subsp. pallidum str. Chicago] Length = 264 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 98/266 (36%), Gaps = 34/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + TVA+N++N +T GF+ + +F +++ + Sbjct: 1 MVRSLWTAATGMNGQQANIDTVANNLANVNTSGFKRQRAEFEDLLYQTIRTAGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V E GS TG D A+ G+ +F + G TRDG F Sbjct: 61 LTPVGVRMGHGVKLAATQRLFEQGSLQHTGVSGDVAIAGEGFFRVLQYDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 KV + LV+++G V I P+ + + + G ++ + + Sbjct: 121 KVDAERQLVTSNGLRLV-----PEIIFPENYVEHSIAISKDGRVTVRVGEQGDPVEVGQL 175 Query: 159 GLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY + G + IP P + G V+ FLE SN +++ EM Sbjct: 176 ELYRFANNAGLAAEGGNVFTQTPASGQPIPGRPGFEGFG-KVEHKFLEMSNVSTVSEMVN 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + + I ++ + A+ Sbjct: 235 MIVAQRAYEFNSKAIQTSDNMLGTAV 260 >gi|251789170|ref|YP_003003891.1| flagellar basal-body rod protein FlgG [Dickeya zeae Ech1591] gi|247537791|gb|ACT06412.1| flagellar basal-body rod protein FlgG [Dickeya zeae Ech1591] Length = 260 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E GSF TG D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQLGTGVRPVATERIHTQGSFSETGNVKDLAIKGAGFFQVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 + +G LV++SG I IP VG G ++Q+G+ I + L Sbjct: 121 QQDSNGQLVTSSGFQV-----QPVITIPANSSNLTVGRDGVVTVTQQGQAAPVQIGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + TP + +G+ + + F+E SN N E+ MI Sbjct: 176 AMFINEAGLENLGENLYAETASSGAPTQSTPGLNGAGL-IYQKFVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + + + Sbjct: 235 QTQRAYEINSKAISSTDQMLQKLTQ 259 >gi|226225711|ref|YP_002759817.1| flagellar basal-body rod protein FlgG [Gemmatimonas aurantiaca T-27] gi|226088902|dbj|BAH37347.1| flagellar basal-body rod protein FlgG [Gemmatimonas aurantiaca T-27] Length = 262 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 101/267 (37%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + +A + R +A N++N +T GF+ + F +++ Sbjct: 1 MDPALRAAATGMMAQQTRTEVIAHNLANVNTPGFKRSRAHFEDLLYQTVQGQQVLGENDT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q E G TG LD A+EG+ +F ++ P G +RDG Sbjct: 61 QITPAIQVGRGTRLAGVQRLHEQGPIEETGRNLDIAIEGEGFFQIQLPSGETAYSRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +++D G LV+++G P++IP F V G +S + I + L Sbjct: 121 QISDQGVLVTSAGY-----ALQPPVRIPDDASEFTVSATGVVSVRRGNDIQPTEIGRIEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G + + ++P P+ +++ LE SN + EM +MI Sbjct: 176 ARFANPSGLLSLGQNLLAPTAASGQPVVGYPNDAGMGRLQQNSLEGSNVEIVQEMVEMIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + I ++ M + NIA Sbjct: 236 AMRAYEINSKAIKTADE-MGQIANNIA 261 >gi|17989431|ref|NP_542064.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 1 str. 16M] gi|23499916|ref|NP_699356.1| flagellar basal body rod protein FlgG [Brucella suis 1330] gi|62317103|ref|YP_222956.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 1 str. 9-941] gi|83269095|ref|YP_418386.1| flagellar basal body rod protein FlgG [Brucella melitensis biovar Abortus 2308] gi|148557926|ref|YP_001257213.1| flagellar basal body rod protein FlgG [Brucella ovis ATCC 25840] gi|161620236|ref|YP_001594122.1| flagellar basal body rod protein FlgG [Brucella canis ATCC 23365] gi|163844346|ref|YP_001622001.1| flagellar basal body rod protein FlgG [Brucella suis ATCC 23445] gi|189022368|ref|YP_001932109.1| flagellar basal body rod protein FlgG [Brucella abortus S19] gi|225628625|ref|ZP_03786659.1| flagellar basal-body rod protein FlgG [Brucella ceti str. Cudo] gi|237816665|ref|ZP_04595657.1| flagellar basal-body rod protein FlgG [Brucella abortus str. 2308 A] gi|254691412|ref|ZP_05154666.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|254695290|ref|ZP_05157118.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|254702576|ref|ZP_05164404.1| flagellar basal body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|254706292|ref|ZP_05168120.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|254711414|ref|ZP_05173225.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis B2/94] gi|254720610|ref|ZP_05182421.1| flagellar basal body rod protein FlgG [Brucella sp. 83/13] gi|254731833|ref|ZP_05190411.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|256029956|ref|ZP_05443570.1| flagellar basal body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|256043073|ref|ZP_05446017.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|256059608|ref|ZP_05449806.1| flagellar basal body rod protein FlgG [Brucella neotomae 5K33] gi|256111943|ref|ZP_05452894.1| flagellar basal body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|256158118|ref|ZP_05456036.1| flagellar basal body rod protein FlgG [Brucella ceti M490/95/1] gi|256252928|ref|ZP_05458464.1| flagellar basal body rod protein FlgG [Brucella ceti B1/94] gi|256256598|ref|ZP_05462134.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|260544341|ref|ZP_05820162.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260564303|ref|ZP_05834788.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|260568516|ref|ZP_05838985.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] gi|260757026|ref|ZP_05869374.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|260759602|ref|ZP_05871950.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|260882836|ref|ZP_05894450.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|261215659|ref|ZP_05929940.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|261220019|ref|ZP_05934300.1| flagellar basal-body rod protein FlgG [Brucella ceti B1/94] gi|261313736|ref|ZP_05952933.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|261319022|ref|ZP_05958219.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis B2/94] gi|261323577|ref|ZP_05962774.1| flagellar basal-body rod protein FlgG [Brucella neotomae 5K33] gi|261753156|ref|ZP_05996865.1| flagellar basal-body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|265985650|ref|ZP_06098385.1| flagellar basal-body rod protein FlgG [Brucella sp. 83/13] gi|265986975|ref|ZP_06099532.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|265989511|ref|ZP_06102068.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|265993390|ref|ZP_06105947.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|265996635|ref|ZP_06109192.1| flagellar basal-body rod protein FlgG [Brucella ceti M490/95/1] gi|297249954|ref|ZP_06933655.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 5 str. B3196] gi|306838572|ref|ZP_07471409.1| flagellar basal-body rod protein FlgG [Brucella sp. NF 2653] gi|306841049|ref|ZP_07473773.1| flagellar basal-body rod protein FlgG [Brucella sp. BO2] gi|17985308|gb|AAL54328.1| flagellar basal-body rod protein flgg [Brucella melitensis bv. 1 str. 16M] gi|23463493|gb|AAN33361.1| flagellar basal-body rod protein FlgG [Brucella suis 1330] gi|62197296|gb|AAX75595.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 1 str. 9-941] gi|82939369|emb|CAJ12317.1| Flagellar basal body rod protein [Brucella melitensis biovar Abortus 2308] gi|148369211|gb|ABQ62083.1| flagellar basal-body rod protein FlgG [Brucella ovis ATCC 25840] gi|161337047|gb|ABX63351.1| flagellar basal-body rod protein FlgG [Brucella canis ATCC 23365] gi|163675069|gb|ABY39179.1| flagellar basal-body rod protein FlgG [Brucella suis ATCC 23445] gi|189020942|gb|ACD73663.1| Flagellar basal body rod protein [Brucella abortus S19] gi|225616471|gb|EEH13519.1| flagellar basal-body rod protein FlgG [Brucella ceti str. Cudo] gi|237787478|gb|EEP61694.1| flagellar basal-body rod protein FlgG [Brucella abortus str. 2308 A] gi|260097612|gb|EEW81486.1| flagellar basal body rod protein [Brucella abortus NCTC 8038] gi|260151946|gb|EEW87039.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|260155181|gb|EEW90262.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] gi|260669920|gb|EEX56860.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 4 str. 292] gi|260677134|gb|EEX63955.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 6 str. 870] gi|260872364|gb|EEX79433.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 9 str. C68] gi|260917266|gb|EEX84127.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 3 str. Tulya] gi|260918603|gb|EEX85256.1| flagellar basal-body rod protein FlgG [Brucella ceti B1/94] gi|261298245|gb|EEY01742.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis B2/94] gi|261299557|gb|EEY03054.1| flagellar basal-body rod protein FlgG [Brucella neotomae 5K33] gi|261302762|gb|EEY06259.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M163/99/10] gi|261742909|gb|EEY30835.1| flagellar basal-body rod protein FlgG [Brucella suis bv. 3 str. 686] gi|262550932|gb|EEZ07093.1| flagellar basal-body rod protein FlgG [Brucella ceti M490/95/1] gi|262764260|gb|EEZ10292.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 3 str. Ether] gi|263000180|gb|EEZ12870.1| flagellar basal-body rod protein FlgG [Brucella melitensis bv. 1 str. Rev.1] gi|264659172|gb|EEZ29433.1| flagellar basal-body rod protein FlgG [Brucella pinnipedialis M292/94/1] gi|264664242|gb|EEZ34503.1| flagellar basal-body rod protein FlgG [Brucella sp. 83/13] gi|297173823|gb|EFH33187.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 5 str. B3196] gi|306288938|gb|EFM60238.1| flagellar basal-body rod protein FlgG [Brucella sp. BO2] gi|306406358|gb|EFM62600.1| flagellar basal-body rod protein FlgG [Brucella sp. NF 2653] Length = 262 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +F++++ + N +Q Sbjct: 1 MKALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQA 60 Query: 56 I----SFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I + V G + + GSF TG D AL G WF ++SP G + TR G F Sbjct: 61 IVPEGALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 DG LV+ G PV I IP + + G++ K + + + L Sbjct: 121 NKNADGQLVTLDGN-PVEPA----ITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 176 ANFTNEAGLEPLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 235 TAQRAYEMNSKVIQAADEMAATVSKNL 261 >gi|163744348|ref|ZP_02151708.1| hypothetical protein OIHEL45_02155 [Oceanibulbus indolifex HEL-45] gi|161381166|gb|EDQ05575.1| hypothetical protein OIHEL45_02155 [Oceanibulbus indolifex HEL-45] Length = 247 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 4/245 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +I ++ +L+++L A+N++N T G++ V F ++ D + +FV+ Sbjct: 1 MTESSHISMSLATSLQRQLDITANNIANASTAGYKGEHVVFEALLQNNTAMGDDQAAFVS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 Y+ G+ TG LD AL G+ WF+ E+ G RDG F + G+L SG Sbjct: 61 DTGSYIDTRPGALSQTGNPLDVALHGEGWFSYETADGQQAYGRDGSFTLDTQGNLTLLSG 120 Query: 120 KYPVLDMASVPIQIP-QKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRENSGI 177 VLD PIQ+P + N+ E G IS + + +G++ V Q + R + Sbjct: 121 A-KVLDAGGAPIQLPTEGLGDINISEDGTISGSETGPLGRIGVFDVPEIQSYKRLGAGML 179 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 V V++G LE SN N + EM ++I + + + T++ + ++ Sbjct: 180 VAPEGAAKPAVAESVQVRQGTLELSNVNPVREMTRLIDVQRAYERTNTMMGNADDLRRDS 239 Query: 238 IRNIA 242 ++ IA Sbjct: 240 LKRIA 244 >gi|313497764|gb|ADR59130.1| FlgG [Pseudomonas putida BIRD-1] Length = 261 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 108/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+ +++N++N T GF+ + +F++++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V S GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+A+G I +P + F VG+ G +S +VI + Sbjct: 121 HLNSDGQIVTANGY-----ALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ TP + G T+++ LE+SN +++ E+ MI Sbjct: 176 ADFINPAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQ-TLENSNVSTVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQQL 261 >gi|126668560|ref|ZP_01739514.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] gi|126626965|gb|EAZ97608.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] Length = 262 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 103/267 (38%), Gaps = 30/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + +ST+++N++N +T GF+ + F +++ +K Sbjct: 1 MNPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQVKRQPGGLNTQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ T LD A+ G + ++ P G TRDG+F Sbjct: 61 ELPSGLQLGTGVRVVGTVKQFTQGNLQITEQPLDMAVNGRGFLQVQLPDGQTAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ DG +V+ SG I IP+ +G G ++ + + L Sbjct: 121 QLNSDGDVVNPSGY-----ALEPNINIPENATNVTIGRDGTVTAVTDDQAAPINLGQITL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 QG N+ N P E G+ ++++G +E SN + E+ MI Sbjct: 176 VDFINPQGLQAIGNNLFKQTNASGDPTEGEPGLAGLGSLEQGSIESSNVEVVEELVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + ++ ++ + NI Sbjct: 236 TQRAYEMNSKVVSTVDQMLQFITNNIG 262 >gi|329898287|ref|ZP_08272370.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC3088] gi|328920852|gb|EGG28295.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC3088] Length = 261 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S + A + R++ +A+N++N +TVGF+ + F +++ Sbjct: 1 MDASLWVAKTGLTAQQMRMTVIANNLANVNTVGFKKDRAVFEDLLYQNVRQPGASADAQT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ IST LD A+ G +F ++ G TRDG F Sbjct: 61 IAPTGLMLGTGTRIIATEKIHRQGNMISTENALDLAIAGRGFFQIQQADGTFAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 K+ D G +++ASG+ V I +P VG G + + + + + L Sbjct: 121 KLNDQGQVITASGQLMV-----PAITVPVNSASLTVGRDGTVDAELEAGAGKVTLGQIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLE-DLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 G + P+E + G++ + +G LE SN N + EM MI Sbjct: 176 ARFINEAGLQSIGRNLYRETTASGPVEVGVPGISGIGELTQGSLEASNVNVVEEMVNMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + + N+ Sbjct: 236 TQRAYEVNSKAISAADGMLRFLNNNL 261 >gi|121997317|ref|YP_001002104.1| flagellar basal-body rod protein FlgG [Halorhodospira halophila SL1] gi|121588722|gb|ABM61302.1| flagellar basal-body rod protein FlgG [Halorhodospira halophila SL1] Length = 261 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A ++ + ++N++N +T GF+ + F ++ + S Sbjct: 1 MDPALWVAKTGLDAQQKSMQVTSNNLANVNTNGFKKDRANFEDLFYQTVRQPGSRASQDN 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + E G+ T LD A+EG + + P G + TRDG Sbjct: 61 LLPSGLMLGTGSRVMGTEKIHSQGNVQQTERSLDVAIEGKGFLQVLRPDGQVGYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ ++G +V++ G +L+ IQ+P++ E ++G G +S + + I + L Sbjct: 121 QLNENGEIVTSGGY--LLEPG---IQVPEEAETISIGSDGTVSAKIPGDEEPEEIGQIEL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + P E G V +G LE SN N E+ MI Sbjct: 176 ADFINPSGLEPVGENMFLETAASGAPEVGAPGEGALG-NVMQGALETSNVNIAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + F + T I ++ ML+ + Sbjct: 235 ENQRGFETNTRAISTTDE-MLQFLNQ 259 >gi|220924579|ref|YP_002499881.1| flagellar basal body rod protein FlgF [Methylobacterium nodulans ORS 2060] gi|219949186|gb|ACL59578.1| flagellar basal body rod protein [Methylobacterium nodulans ORS 2060] Length = 248 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + IGL+AQ+AL + L +A+NM+N T GF+ +F E + + D++ Sbjct: 1 MQNAQLIGLSAQVALGRELEVIANNMANVSTTGFKARTTRFQEYLMPKASAETFRRPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V L G +TG L+ A+ GDA+FA+++P+G TR+G F++ G LV Sbjct: 61 LSYVIDAGTPLDLSQGPIETTGNPLNAAIRGDAFFAVQTPQGERYTRNGAFELNAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G + D PIQ ++ +G G IS + L Q + Sbjct: 121 TSDGNLVLGD--GGPIQFNPQETGAAIGPDGTISTNQGNRGKLRLVRFSDPQALSNAGAN 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + P P + V+ G +E SN + + M +M+ + + + ++ + + Sbjct: 179 LYAATAAPLPA--GTQARVEPGAVERSNVSPVLTMTRMMEVNRIYALVSDSVSRMDALRG 236 Query: 236 EAIRNIA 242 AI+ +A Sbjct: 237 SAIQRLA 243 >gi|323527711|ref|YP_004229864.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1001] gi|323384713|gb|ADX56804.1| flagellar basal-body rod protein FlgG [Burkholderia sp. CCGE1001] Length = 262 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 99/261 (37%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG + I +P +G G + S + + TM L Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITVPTNATSLTIGSDGAVSITVAGSTNTQQLGTMQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETASSGAPNVAQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQ 255 >gi|332305617|ref|YP_004433468.1| flagellar basal-body rod protein FlgG [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172946|gb|AEE22200.1| flagellar basal-body rod protein FlgG [Glaciecola agarilytica 4H-3-7+YE-5] Length = 262 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 115/266 (43%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ +++N++N TVGF+ + F +++ N + S Sbjct: 1 MHPALWISKTGLDAAQTDVAVISNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ ++T LD +++G +F ++ P G TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQPDGTIAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G +V+ + + I +P+ + + + GE+S +V+ + L Sbjct: 121 TLNDEGQIVTPGAGFLLQPN----ITVPEDAQQITISQDGEVSASIRGQADPQVLGQISL 176 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G N + P++ + G+ TV +G LE SN N E+ +I Sbjct: 177 SDFVNMTGLQPIGQNLYVETATSGAPIQGVPGLEGLGTVVQGALETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I + + + I+ + Sbjct: 237 SQRLYEMNSKVISAVDSMLGQVIQQL 262 >gi|241589578|ref|YP_002979603.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] gi|240868290|gb|ACS65949.1| flagellar basal-body rod protein FlgG [Ralstonia pickettii 12D] Length = 261 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L V++N++N +T GF+ + F +++ + + S Sbjct: 1 MIRSLWISKTGMEAQQTQLDVVSNNLANVNTTGFKRSRAVFEDLLYQNAREPGAQSSQQT 60 Query: 58 ------FVASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ G+ TG D A+ G+ +F ++ P G TRDG F Sbjct: 61 ALPSGMQIGTGTRIVATSRLHSQGNLSKTGNATDVAINGNGFFQVQRPDGTLAYTRDGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 +++ G LV++SG + +P+ +G+ G ++ + L Sbjct: 121 QISAQGQLVTSSGYLV-----QPAMMVPRNATSLMIGKDGVVTVTTPGMVNRTQVGAFQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + G+ + + ++E SN N + EM Q+I Sbjct: 176 ANFVNPAGLRSLGENLYAETEASGGANLAVPGGNGLGM-LHQNYVETSNVNVVEEMIQLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + ++ + + + Sbjct: 235 QTQRAYEINSKAVQTADRMLEKIAQ 259 >gi|183598619|ref|ZP_02960112.1| hypothetical protein PROSTU_02019 [Providencia stuartii ATCC 25827] gi|188020798|gb|EDU58838.1| hypothetical protein PROSTU_02019 [Providencia stuartii ATCC 25827] Length = 260 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I + L +++N++N T GF+ + F +++ GA+ ++ Sbjct: 1 MIRSLWIAKTGLDTQQTNLDVISNNLANVSTNGFKRQRAVFEDLLYQNIRQPGAMSSEQT 60 Query: 54 QKISFVASGK------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S + G G+ TG D A++G + ++ P G TRDG Sbjct: 61 SLPSGLQLGTGSRPVATMRIHSQGALNKTGNTTDIAIKGQGFLHVQLPDGTDAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG LV++SG V I IP + G +S + + I + L Sbjct: 121 QPNQDGQLVTSSGYQIV-----PAITIPDNANSLTIARDGTVSITVYGDNQPQQIGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P + +G+ + + LE SN N E+ MI Sbjct: 176 TTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGL-LYQHMLETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVSASDQ-MLQRLTQL 260 >gi|330808197|ref|YP_004352659.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376305|gb|AEA67655.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 261 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 106/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF+ + +F +++ +K Sbjct: 1 MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQVKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + GS +T LD A++G +F + P G TRDG F Sbjct: 61 ELPSGLQVGTGVRIVGTQKNFTAGSLQTTEQPLDMAIDGRGFFQILQPDGTTSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G +V+ASG I IP + F VG G +S +VI + Sbjct: 121 HLDSNGQIVNASGF-----ALEPAIIIPNDAQTFTVGRDGTVSITVAGNPASQVIGNLQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ TP + G T+ + LE SN +++ EM MI Sbjct: 176 ADFINPAGLQAVGNNLFLETAASGAPQVGTPGLNGFGTTL-QNTLETSNVSTVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQNL 261 >gi|109899400|ref|YP_662655.1| flagellar basal body rod protein FlgG [Pseudoalteromonas atlantica T6c] gi|109701681|gb|ABG41601.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas atlantica T6c] Length = 262 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 116/266 (43%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ +++N++N TVGF+ + F +++ N + S Sbjct: 1 MHPALWISKTGLDAAQTDVAVISNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ ++T LD +++G +F ++ P G I TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKAHTQGNMLTTENALDMSIQGRGFFEIQQPDGSIAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G +V+ + + I +P+ + + + GE+S +V+ + L Sbjct: 121 TLNDEGQIVTPGAGFLLQPN----ITVPEDAQQITISQDGEVSASIRGQADPQVLGQISL 176 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G N + P++ + G+ TV +G LE SN N E+ +I Sbjct: 177 SDFVNMTGLQPIGQNLYVETATSGAPIQGVPGLEGLGTVVQGALETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I + + + I+ + Sbjct: 237 SQRLYEMNSKVISAVDSMLGQVIQQL 262 >gi|153831580|ref|ZP_01984247.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156976143|ref|YP_001447049.1| flagellar basal body rod protein [Vibrio harveyi ATCC BAA-1116] gi|269960118|ref|ZP_06174494.1| Putative flagellar basal-body rod protein flgG [Vibrio harveyi 1DA3] gi|148872090|gb|EDL70907.1| flagellar basal-body rod protein FlgG [Vibrio harveyi HY01] gi|156527737|gb|ABU72822.1| hypothetical protein VIBHAR_04914 [Vibrio harveyi ATCC BAA-1116] gi|269835089|gb|EEZ89172.1| Putative flagellar basal-body rod protein flgG [Vibrio harveyi 1DA3] Length = 261 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 106/259 (40%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T ELD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G +V++ G IQIP F+VG G ++ + + + L Sbjct: 121 HINSEGLMVNSQGL-----PLEPQIQIPDNAISFSVGVDGTVTTTSADDPTPQQLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + P + + ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLFRETEASGPADELIAGEDGAGSIKQGALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|149375032|ref|ZP_01892805.1| Flagellar basal body rod protein [Marinobacter algicola DG893] gi|149360921|gb|EDM49372.1| Flagellar basal body rod protein [Marinobacter algicola DG893] Length = 262 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 103/267 (38%), Gaps = 30/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + +ST+++N++N +T GF+ + F +++ I Sbjct: 1 MHPALWVSKTGLSAQDTNMSTISNNLANVNTTGFKRDRAVFQDLLYQIDRQPGGLNTQNS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ T LD A+ G + + P G I TRDG+F Sbjct: 61 ELPSGLQLGTGVRIVGTAKQFSQGNLEVTEQPLDMAVNGRGFMQILLPDGQIAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ +G +V+ G I +P+ +G+ G +S + + L Sbjct: 121 QLNSNGDIVNPDGY-----TLEPNINVPENATNITIGKDGTVSAVTDDQAAPVNLGEITL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 QG N+ + N P E G+ T+++G +E SN + E+ MI Sbjct: 176 VDFINPQGLQAIGNNLFKATNASGDPAEGEPGIGGLGTLEQGMVEASNVEVVEELVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + ++ ++ + NI Sbjct: 236 TQRAYEMNSKVVSATDQMLQFITNNIG 262 >gi|303239789|ref|ZP_07326313.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592726|gb|EFL62450.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 265 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 115/267 (43%), Gaps = 30/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------- 50 M + + A + + +++N+SN +T ++ +V+F +++ N Sbjct: 1 MMRALWTAGSGMTAQQLSVDVISNNLSNVNTTAYKKERVEFKDMLYETLNRASVMDGDGK 60 Query: 51 ----DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + S VA+ K S +G+ T LDFA++GD +F + P+G TRDG F Sbjct: 61 PVNLQVGHGSSIVATSK---SFGIGNLEKTDNPLDFAIDGDGFFTVSGPKGTAYTRDGNF 117 Query: 107 KV--TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIA---TM 158 K+ ++DG+ ++ S YPVLD I I V + GE+S G V+ + Sbjct: 118 KISVSEDGNKLTTSDGYPVLDDTGAEINIDVDVSKLIVSDFGELSYTDDTGVVVPLGQKI 177 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 G+ QG ++ + N + + VK+ ++E SN + EM ++I Sbjct: 178 GIVKFSNRQGLESMGSNLYASNSASGEAVQDAEMGTVSNVKQYYIESSNVQVVEEMVKLI 237 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + + ML ++ Sbjct: 238 VAQRAYEINSKAVQTADD-MLGIANSL 263 >gi|258592560|emb|CBE68869.1| Flagellar basal-body rod protein flgG (Distal rod protein) [NC10 bacterium 'Dutch sediment'] Length = 262 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 102/266 (38%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + +A A + L +A+N++N +T GF+ ++ F ++ + Sbjct: 1 MIRALFSAVAGMQAQQLNLDNIANNLANVNTTGFKRSRLDFQDLFYQTYRPAGASTASGA 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G + ++ + G T LD +EGD +F + P G TR G F Sbjct: 61 EIPVGIQVGHGSKPIASQRIYIQGDPQQTENPLDLMIEGDGFFQVLRPDGTIAYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 K +G +V++ G + IP + +VG G +S + I T+ L Sbjct: 121 KRDANGRVVTSDGF-----ALQPEVSIPAQAMTIHVGSDGVVSATIPGQTASQQIGTIEL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P G T+ +GFLE SN + EM +I Sbjct: 176 SRFINPAGLQSVGRNLSLPTSASGDPTSGAPGTQGLGTIGQGFLELSNVKVVEEMVNLIM 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + + ++ ML+ NI Sbjct: 236 SQRAYEAGSKAVQAADE-MLQVSNNI 260 >gi|182412221|ref|YP_001817287.1| flagellar basal-body rod protein FlgG [Opitutus terrae PB90-1] gi|177839435|gb|ACB73687.1| flagellar basal-body rod protein FlgG [Opitutus terrae PB90-1] Length = 261 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 29/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S A + L+T+A+N++N +T GF+ K++F +++ S Sbjct: 1 MNLSLYSAATGMEAQQLNLNTIANNLANVNTPGFKRSKIEFQDLLYQKPTRASGTDSGGG 60 Query: 59 --------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGR 105 V +G + G STG +LD A++GD +F ++ P G TRDG Sbjct: 61 NIVPTGLEVGNGSRVAATSKVFTQGQLTSTGEKLDLAIQGDGFFEIQRPDGTFAYTRDGS 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYS 162 FK+ G +V+ G PVL IP E + + G+++ G + + Sbjct: 121 FKLNAQGQVVTIDG-LPVLSGFQA---IPAGTEGVAISDNGQVTLTGANGTTTFRLSVTR 176 Query: 163 VDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + P E G + +G++E SN N + EM +I Sbjct: 177 FANPSGLRSVGGNLYEETAASGTPEIGQPGEQGYG-QIMQGYIESSNVNIVEEMVNLIVA 235 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 236 QRAYEINSKSIQTSDEMLQNVAQ 258 >gi|224534494|ref|ZP_03675070.1| flagellar hook-basal body complex protein [Borrelia spielmanii A14S] gi|224514171|gb|EEF84489.1| flagellar hook-basal body complex protein [Borrelia spielmanii A14S] Length = 282 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L V++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPIVGKLGTGVEENEIYTIFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ +G +PVL I K F + +G+I Sbjct: 121 RNGSFTIGKEGILVTKNG-FPVLGEKGY---IYLKKNNFKITPQGQIFHNSNFASNPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDLSGVTVKRGF 198 + +++ T+ + + + + ++ NS ++ ++ Sbjct: 177 VSEHENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDVSLRPKIETEA 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|163742543|ref|ZP_02149929.1| flagellar basal-body rod protein FlgF [Phaeobacter gallaeciensis 2.10] gi|161384128|gb|EDQ08511.1| flagellar basal-body rod protein FlgF [Phaeobacter gallaeciensis 2.10] Length = 238 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 119/241 (49%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ Q L + + VA+N++N+ T G+R + FSE + + + +S Sbjct: 1 MGDTGYTTLSRQSGLMREMRVVANNIANSATTGYRAEGIIFSEFIQSAPGQ--ESLSMGR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S G+ +G +LD A+EGD +F +E+P G LTR G F G LV+ G Sbjct: 59 ANIRNTSMAQGALTQSGGDLDLAIEGDGYFMVETPMGERLTRSGAFSTNAQGDLVTMDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD P+ IP + G G +S G+ + +G++ + + +R + + Sbjct: 118 HRVLDAGRAPVFIPGDAKSIKFGADGTLSADGRALGQIGIFKPEENYQMIREDGVMFRVD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +ED V +GFLE SN N++ ++ +M+ + + + + ++ ++ + AI+N Sbjct: 178 GE---IEDAGDARVLQGFLEGSNVNAISQLARMVEIQRAYEMGQSFLETEDQRVRNAIKN 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|224532206|ref|ZP_03672838.1| flagellar hook-basal body complex protein [Borrelia valaisiana VS116] gi|224511671|gb|EEF82077.1| flagellar hook-basal body complex protein [Borrelia valaisiana VS116] Length = 282 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 111/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L V++N++N D VG++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDVVSNNLANIDLVGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPIVGKLGTGVEENEIYTLFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G+I Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQIFHNSSFESNPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ Sbjct: 177 VSEYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEMDISLRPKIETET 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N + EM MI + + + + I + + + I I Sbjct: 237 LEASNVNPVKEMVLMIEINRAYEANQKTIQTEDNLLGKLINEIG 280 >gi|167628969|ref|YP_001679468.1| flagellar basal-body rod protein flgg, putative [Heliobacterium modesticaldum Ice1] gi|167591709|gb|ABZ83457.1| flagellar basal-body rod protein flgg, putative [Heliobacterium modesticaldum Ice1] Length = 258 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 105/262 (40%), Gaps = 27/262 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + +A + + T+++N++N +T G++ + +F +++ + ++ Sbjct: 1 MMRALYSSATGMIAQQLNMDTISNNLANVNTNGYKKSRAEFQDLLYSTIRTATAQVPTGM 60 Query: 57 ---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTD 110 + V G+ + T D A+ G+ +F L +P TRDG FK+ Sbjct: 61 QVGAGVRPSSITTIISSGNMVQTDNPYDLAITGEGYFRLINPNNDAVPFYTRDGSFKLDK 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT---MGLYSVD 164 +G LV+A G LD +P+ ++ G IS G+ + T + LY+ Sbjct: 121 EGYLVNADGLR--LDGFDP---LPEGATDLDINADGMISYKNAVGERVDTGQRIQLYTFP 175 Query: 165 MSQGFVRRENSGISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G R + ++ + + + +LE SN + EM MI + Sbjct: 176 NPAGLNREGRNLLTQSEASGEAIGGDAGADGRGRIAQRYLESSNVQVVDEMVAMITAQRA 235 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + T I ++ + +A N+ Sbjct: 236 YEVNTKAIQTADEMLGQA-NNL 256 >gi|309388845|gb|ADO76725.1| flagellar basal-body rod protein FlgF [Halanaerobium praevalens DSM 2228] Length = 250 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 14/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGA--IKNDIDQK 55 M ++ LE++ + ++N++N +T GF+ + F E++ + + DQ+ Sbjct: 1 MIRGLYTAASSMGVLEKKTNIRSNNLANVNTNGFKKSEAITASFPEMLLSKIEADKADQQ 60 Query: 56 ISFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 I +A+G + + G F T LDFA+EG +F +E+ G +RDG F + D Sbjct: 61 IGSLATGAYLERSFKDMSQGDFKRTDNALDFAIEGSGFFVIETENGEKYSRDGNFTINAD 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFV 170 L++ SG VLD IQI D+ F V +G+I+ G A +GL + Sbjct: 121 SELITQSGN-NVLDSNGNRIQIIP-DQDFRVSAEGQITFNNGLQGAQIGLVDFENEAELA 178 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + ++ P+ +G + +G++E SN + EM +MI T+ + S +I Sbjct: 179 QTGDNLYELQGETEPIASQAG--IAQGYVEGSNVQIVEEMAKMIKTTRHYESNQKVISSI 236 Query: 231 EKSMLEAIRNIA 242 ++S+ + I + Sbjct: 237 DESLNKVINEVG 248 >gi|332298513|ref|YP_004440435.1| flagellar basal-body rod protein FlgF [Treponema brennaborense DSM 12168] gi|332181616|gb|AEE17304.1| flagellar basal-body rod protein FlgF [Treponema brennaborense DSM 12168] Length = 265 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 28/258 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + IG + A + RL +++N++N DT ++ F E++ ND Sbjct: 1 MVRGWYIGSSGMNAQQNRLDAISNNLANADTTAYKRDVTVSKSFPELLMRRMNDDGVYRT 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + V + + Y E GSF T ++ D AL G+ +FA+++P G T Sbjct: 61 PFGSADAAPIVGKIGLGVETNELYTDFEQGSFKQTSSKADMALSGEGFFAVQTPAGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG 159 R+G F + +G L + G YPVL I D+ F V G I ++I Sbjct: 121 RNGNFMIGKEGILETKEG-YPVLGENGY---IRVNDDSFTVNPDGMIYSADDMELIDRFK 176 Query: 160 LYSVDMSQGFVRRENSGISPNI---PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + D + + +S E +G+ E SN N + EM MI + Sbjct: 177 VVRFDNERYLQKMGSSLYKNTDISGEAYIAEGKERPAFIQGYTETSNVNVVNEMVSMIEV 236 Query: 217 TQKFNSITTLIDENEKSM 234 + + + I + M Sbjct: 237 NRAYEANQKTIQTEDTMM 254 >gi|307131607|ref|YP_003883623.1| flagellar basal-body rod protein flgG [Dickeya dadantii 3937] gi|306529136|gb|ADM99066.1| Flagellar basal-body rod protein flgG [Dickeya dadantii 3937] Length = 260 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLNAQQTNMDVISNNLANVSTNGFKRQRAVFEDLMYQTVRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G ++ E GSF TG D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQLGTGVRPVATERIHTQGSFSETGNVKDLAIKGAGFFQVLMPDGTTSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 + +G LV++SG I IP VG G ++Q+G+ I + L Sbjct: 121 QQDSNGQLVTSSGFQV-----QPAITIPANSSNLTVGRDGVVTVTQQGQTAPVQIGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + TP + +G+ + + F+E SN N E+ MI Sbjct: 176 AMFINEAGLENLGENLYAETASSGAPTQSTPGLNGAGL-IYQKFVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + + + Sbjct: 235 QTQRAYEINSKAISSTDQMLQKLTQ 259 >gi|323136553|ref|ZP_08071634.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] gi|322397870|gb|EFY00391.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] Length = 240 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 135/242 (55%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++F + L++Q+ L++RL+T+A N++N+ T+G+R V F V+ +F + Sbjct: 1 MHSAFYVSLSSQITLDKRLTTIAANVANSSTIGYRATGVSFDTVMSKTS---PYVTNFPS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G +Y+S+ G T LD A+ GDAWFA+ +P+G+ TRDGR ++ + G + + G Sbjct: 58 TGVDYISRSSGGLTKTDNPLDVAVIGDAWFAIRTPQGVAYTRDGRMRMMETGDIQTILG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLD + PI++ + G I+Q + + +GL+ +D + R ENS + P+ Sbjct: 117 YPVLDAGNSPIKLDPTLGPPMIYRDGMITQGDRQVGAIGLFEIDGNATLQRGENSSVIPS 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P+ + + + +G LE++N N + E+ ++I + F S + D + S A+R Sbjct: 177 TPAIPVTNFTQNGMAQGHLENANVNPVSEITKLIMAHRSFESASASYDMMDNSQRAAVRT 236 Query: 241 IA 242 + Sbjct: 237 LG 238 >gi|304438314|ref|ZP_07398255.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368680|gb|EFM22364.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 266 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 106/266 (39%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND------ 51 M I + + + +A+N++N T G++ + +F ++ ND Sbjct: 1 MWRGLYIAASGMITETKHTDMIANNLANAATTGYKRDDMAVREFEPMLLRRINDHAADTD 60 Query: 52 ---------------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + A + G+ +TG DF + G +F +++P+ Sbjct: 61 VTSFKGFRIRSGAAIVGTLGLGSAVDEIATDHIQGALQTTGNTYDFGISGQGYFIIDTPQ 120 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G TRDG F + G L + G+ VL PI IP V G I G+ IA Sbjct: 121 GQRYTRDGSFYRSSTGQLQNVRGQ-AVLSPQGQPITIPADARNVTVSSDGRIYANGRQIA 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G D + ++ ++ P P + +++G LE SN + + EM ++I+ Sbjct: 180 QLGFVQFDEEKAVIKEGDNLYKPQPGAQPQQATG--VIEQGMLEMSNTSVVTEMVELINN 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + + + + +A+ ++ Sbjct: 238 YRVYEAGSKAVQTQDALLDKAVNDVG 263 >gi|229591869|ref|YP_002873988.1| flagellar basal body rod protein FlgG [Pseudomonas fluorescens SBW25] gi|229363735|emb|CAY51140.1| flagellar basal-body rod protein [Pseudomonas fluorescens SBW25] Length = 261 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF+ + +F +++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKKQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + G+ TG LD A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQIVGTQKNFSAGNLQQTGQPLDMAINGRGFFQILQPDGTTSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G +V+A+G + +P + F VG G +S +VI + Sbjct: 121 HLDSNGQIVTANGF-----ALEPAVVVPADAKTFTVGNDGTVSITVAGNPASQVIGNLQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ TP + G T+ + LE SN +++ EM MI Sbjct: 176 ADFINPAGLQAMGNNLFLETASSGAPQIGTPGLNGFGTTL-QSTLETSNVSTVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQNL 261 >gi|157147100|ref|YP_001454419.1| flagellar basal body rod protein FlgG [Citrobacter koseri ATCC BAA-895] gi|157084305|gb|ABV13983.1| hypothetical protein CKO_02877 [Citrobacter koseri ATCC BAA-895] Length = 261 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +++ +++N++N +T GF+ + F+++ + Sbjct: 1 MNPALWISKTGLAAQDAKMTAISNNLANVNTTGFKRDRAMFADLFYQNQRTPGGQLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V VGS +TG D A+ G +F +E+ G I TR G F Sbjct: 61 IAPTGIQYGTGVKIVGTQKEFTVGSIQNTGQTFDVAITGQGFFQVETADGDIAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + T DG L +A G V I++P+ + +G+ G I+ + + L Sbjct: 121 QKTPDGVLTNAQGLPLV-----PQIELPENVKDLQIGKDGTITATVAGETDPVELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + + P ED G +++G LE SN + EM MI Sbjct: 176 VNFVNPAGLEAIGGNLYRETAASGEAVEGVPGEDALG-QLEQGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + ++ + + Sbjct: 235 TVQRAYEMNAKMVSAADDML 254 >gi|256014942|ref|YP_003104951.1| flagellar basal-body rod protein FlgG [Brucella microti CCM 4915] gi|255997602|gb|ACU49289.1| flagellar basal-body rod protein FlgG [Brucella microti CCM 4915] Length = 262 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +F++++ + N +Q Sbjct: 1 MKALMIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQA 60 Query: 56 I----SFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I + V G + + GSF TG D AL G WF ++SP G + TR G F Sbjct: 61 IVPEGALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 DG LV+ G PV I IP + + G++ K + + + L Sbjct: 121 NKNADGQLVTLDGN-PVEPA----ITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 176 ANFTNEAGLEPLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 235 TAQRAYEMNSKVIQAADEMAATVSKNL 261 >gi|146307867|ref|YP_001188332.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina ymp] gi|145576068|gb|ABP85600.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] Length = 261 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF+ + +F +++ I+ Sbjct: 1 MLPALWVSKTGLSAQDMNLTTISNNLANVATTGFKRDRAEFEDLLYQIRRQPGGQSSQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQLGTGVRVVGTQKIFTAGSLQTTEQPLDMAINGRGFFQILQPDGTVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG +V++ G I +P + F VGE G +S + ++I + L Sbjct: 121 HLNSDGQIVTSQGF-----ALEPAIVLPNEVRTFTVGEDGTVSVTTAGNPQPQIIGNIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ P + G T+ + LE+SN + + E+ MI Sbjct: 176 ADFVNPAGLEAIGNNLFLETGSSGAPQVGNPGLNGLGTTL-QNTLENSNVSVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQNL 261 >gi|302338304|ref|YP_003803510.1| flagellar basal-body rod protein FlgG [Spirochaeta smaragdinae DSM 11293] gi|301635489|gb|ADK80916.1| flagellar basal-body rod protein FlgG [Spirochaeta smaragdinae DSM 11293] Length = 264 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---IS 57 M S + + + T+++N+SN +T GF+ + F +++ ++ Sbjct: 1 MMRSLWTAASGMTGQQFNIDTISNNLSNVNTTGFKKNRADFEDLLYQTSRVAGTPATELT 60 Query: 58 FVASGKEYLS----------KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V +G + G+ +TG D A++GD +F + G +RDG F Sbjct: 61 TVPTGVQVGHGVKVAATQKMFTQGALQNTGNVTDLAIQGDGFFRVLLIDGSYGYSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ +G LV+++G + + +P+ + + + G I+ + + Sbjct: 121 KIDSNGQLVNSNGHRLI-----PEVVLPENFERDSLTISQDGRITVKVAGNDDPVQVGQL 175 Query: 159 GLYSVDMSQGFVRRE------NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY G + IP P D G TV + FLE SN + + EM Sbjct: 176 ELYRFVNPAGLSAIGQNNFKITNASGDAIPGRPGFDGMGQTV-QRFLEMSNVSVVQEMVN 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML ++ Sbjct: 235 MIVAQRAYELNSKAIQTSD-TMLGIANSL 262 >gi|300722680|ref|YP_003711970.1| flagellar basal-body rod cell-distal protein [Xenorhabdus nematophila ATCC 19061] gi|297629187|emb|CBJ89783.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Xenorhabdus nematophila ATCC 19061] Length = 260 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + + +A+N++N T GF+ +V E++ + S Sbjct: 1 MIRSLWIAKTGLDVQQTNMDVIANNLANVSTSGFKRQRVVSEELIYQTERQPGAMSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G ++ E G+ T D A++G +F ++ P G TRDG F Sbjct: 61 NLPSGLQIGTGARPVATERLHSQGNLAQTNNTKDVAIKGQGFFQIQMPDGTTGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+A G V I IP + G IS + + + L Sbjct: 121 QVDQNGQLVTAGGFQVV-----PAIIIPDNATKIGIARDGIISVNVQGQNAPQQVGQLTL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + N P+E+ G+ + +G++E SN N E+ MI Sbjct: 176 TTFINESGLESIGENLYLETNSSGVPVENAPGINGTGLLYQGYVETSNVNVAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + + +++ + + + Sbjct: 236 VQRAYEINSKAVSTSDQMLQKLTQ 259 >gi|304397206|ref|ZP_07379085.1| flagellar basal-body rod protein FlgG [Pantoea sp. aB] gi|308186395|ref|YP_003930526.1| Flagellar basal-body rod protein flgG [Pantoea vagans C9-1] gi|304355355|gb|EFM19723.1| flagellar basal-body rod protein FlgG [Pantoea sp. aB] gi|308056905|gb|ADO09077.1| Flagellar basal-body rod protein flgG [Pantoea vagans C9-1] Length = 260 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQMNMDVIANNLANVSTNGFKRSRAVFEDLMYQTMRQPGTQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A+ G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVTTERLHTQGNLSQTSNSKDIAINGQGYFQIQMPDGTSAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +V +G LV+ SG +PV I IP V G +S + + L Sbjct: 121 QVDQNGQLVTNSG-FPVQPG----ITIPANATSITVSRDGVVSVTQQGQAQAAQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP ++ +G+ + +G+ E SN N E+ MI Sbjct: 176 STFMNDAGLDSVGENLYKETQASGAPTDSTPGQNGAGL-LYQGYTETSNVNVAEELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEINSKAISTSDQMLAKLTQ 259 >gi|158321569|ref|YP_001514076.1| hypothetical protein Clos_2549 [Alkaliphilus oremlandii OhILAs] gi|158141768|gb|ABW20080.1| protein of unknown function DUF1078 domain protein [Alkaliphilus oremlandii OhILAs] Length = 264 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 112/267 (41%), Gaps = 32/267 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + + A + + T+++N++N +T G++ KV+F +++ A Sbjct: 1 MRALWTAASGMKAQQLNMDTISNNLANVNTTGYKKQKVEFKDLLYANMRTTNLVDGEGSP 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + VA+ + + + G+ T D A+ G+ +F +E+P G TRDG F Sbjct: 61 VNLQVGHGVMPVATTRLFTT---GNLERTDNPFDMAINGEGFFVIEAPSGDRFYTRDGNF 117 Query: 107 KVTDDG---SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATM 158 K++ +G LV++ G Y V+ I + V G I+ + + IAT+ Sbjct: 118 KLSVEGDEMRLVTSDG-YTVVSEFEDAIYFDGTMKEITVNANGLITAETEDGEIEEIATI 176 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMI 214 L + +G + + + E+ + + +LE SN + EM ++I Sbjct: 177 ALANFINPEGLLAVGKNLYKETVASGEAVFMEEEARTSDIVQNYLETSNVQIVDEMVRLI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ ML N+ Sbjct: 237 TAQRAYEINSKAIQTSDE-MLGIANNL 262 >gi|90411006|ref|ZP_01219020.1| putative flagellar basal-body rod protein FlgF [Photobacterium profundum 3TCK] gi|90328219|gb|EAS44530.1| putative flagellar basal-body rod protein FlgF [Photobacterium profundum 3TCK] Length = 249 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + T A+N++N T GFR ++ + + A + ++ F Sbjct: 1 MDRALYLAMSGAKQDMYGMQTHANNLANVRTTGFRAD-LEQARSMQAYGEGLPSRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + GS ++TG +LD A+EGD W A+ G TR G K+ + G L +++G Sbjct: 59 TERPGQDFSQGSVMTTGRDLDVAVEGDGWLAVLDASGQEAYTRAGHLKIDETGMLQNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +L PI IP VG G IS + ++ + L D + + Sbjct: 119 NL-MLGENGGPIFIPLPINKIQVGNDGTISVLPQGAPPDAMEIVDRLKLVRPDN-RDLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P + +GVT+ +G LE SN N++ EM MI L + F ++ E Sbjct: 177 DVNGLFKSKTPGETYDADAGVTLLKGALEGSNVNAVGEMTSMIDLQRHFEMQVKIMKTAE 236 Query: 232 KSMLEA 237 + M +A Sbjct: 237 E-MDQA 241 >gi|15595119|ref|NP_212908.1| flagellar basal body rod protein FlgG [Borrelia burgdorferi B31] gi|195941595|ref|ZP_03086977.1| flagellar basal body rod protein FlgG [Borrelia burgdorferi 80a] gi|216264940|ref|ZP_03436932.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 156a] gi|221217835|ref|ZP_03589302.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 72a] gi|223889350|ref|ZP_03623936.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 64b] gi|224532949|ref|ZP_03673558.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi WI91-23] gi|224533277|ref|ZP_03673871.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi CA-11.2a] gi|225548956|ref|ZP_03769933.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 94a] gi|225549893|ref|ZP_03770854.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 118a] gi|226320636|ref|ZP_03796195.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 29805] gi|226321474|ref|ZP_03797001.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi Bol26] gi|3913655|sp|O51715|FLGG_BORBU RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|2688724|gb|AAC67132.1| flagellar basal-body rod protein (flgG) [Borrelia burgdorferi B31] gi|215981413|gb|EEC22220.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 156a] gi|221192141|gb|EEE18361.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 72a] gi|223885036|gb|EEF56140.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 64b] gi|224512113|gb|EEF82505.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi WI91-23] gi|224513442|gb|EEF83799.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi CA-11.2a] gi|225369352|gb|EEG98804.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 118a] gi|225370559|gb|EEG99995.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 94a] gi|226233270|gb|EEH32022.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi Bol26] gi|226233959|gb|EEH32681.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi 29805] gi|312149206|gb|ADQ29277.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi N40] Length = 265 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV++ G Y VL I P++ + E+G +S + + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----ILFPEEYIQNSITISEEGIVSVKIDTSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G +++G LE SN + EM Sbjct: 176 EISRFINPAGLSAIGSNLFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|268680164|ref|YP_003304595.1| flagellar basal-body rod protein FlgG [Sulfurospirillum deleyianum DSM 6946] gi|268618195|gb|ACZ12560.1| flagellar basal-body rod protein FlgG [Sulfurospirillum deleyianum DSM 6946] Length = 262 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 114/266 (42%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S +A + ++ T ++N+SN +T+G++ + +F++++ S Sbjct: 1 MIRSLYTAATGMIAQQTQIDTTSNNISNVNTIGYKKQRAEFADLMYQTMTYAGTSTSATS 60 Query: 59 -------VASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V G G+F TG LD A+ G+ +F ++ P G TR+G F Sbjct: 61 TSPTGIEVGLGVRPTAIAKQFTQGNFKETGNSLDVAITGNGFFQIQLPDGTTGYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ +GS+V++ G Y +L + IP+ +G G +S + I + L Sbjct: 121 KLDSEGSVVNSDG-YRLLPE----LTIPEDATQITIGVNGVVSVLQAGQTETNEIGQIEL 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G N+ I+ + P+ G+ ++ F+E SN + EM +I Sbjct: 176 ANFINPAGLHSLGDNNYINTSASGDPIVSEPGLNGLGQTRQQFVEMSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I +++ ML+ + + Sbjct: 236 GQRAYEANSKAITTSDE-MLQTVNAL 260 >gi|225686012|ref|YP_002733984.1| flagellar basal body rod protein FlgG [Brucella melitensis ATCC 23457] gi|256262865|ref|ZP_05465397.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|225642117|gb|ACO02030.1| flagellar basal-body rod protein FlgG [Brucella melitensis ATCC 23457] gi|263092700|gb|EEZ16909.1| flagellar basal body rod protein [Brucella melitensis bv. 2 str. 63/9] gi|326410335|gb|ADZ67399.1| flagellar basal body rod protein FlgG [Brucella melitensis M28] gi|326553627|gb|ADZ88266.1| flagellar basal body rod protein FlgG [Brucella melitensis M5-90] Length = 262 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +F++++ + N +Q Sbjct: 1 MKALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQA 60 Query: 56 I----SFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I + V G + + GSF TG D AL G WF ++SP G + TR G F Sbjct: 61 IVPEGALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 DG LV+ G PV I IP + + G++ K + + + L Sbjct: 121 NKNADGQLVTLDGN-PV----EPAITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 176 ANFTNEAGLEPLGGNLYRETEASGGALVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 235 TAQRAYEMNSKVIQAADEMAATVSKNL 261 >gi|307721135|ref|YP_003892275.1| flagellar basal-body rod protein FlgG [Sulfurimonas autotrophica DSM 16294] gi|306979228|gb|ADN09263.1| flagellar basal-body rod protein FlgG [Sulfurimonas autotrophica DSM 16294] Length = 262 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 117/266 (43%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S L ++ ++ T A+N++N +T+GF+ + +F++++ + S Sbjct: 1 MMQSLYTASTGMLGMQTQIDTTANNIANVNTIGFKKSRAEFADLMYHVMEYAGTSTSDTT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G + GS T LD A+ G +F +E P G + +++G F Sbjct: 61 KSPTGIEVGLGVRPTAINKIFSEGSLKQTDNNLDLAITGKGFFKMELPDGTEVYSKNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ DG++V++ G + I IP N+G G ++ + I + Sbjct: 121 KIDQDGTVVNSDGYTLI-----PQIVIPPDATNINIGTDGTVTVIQPGQTQATQIGQIQT 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G ++ I + P+E + GV T+++GF+E SN + E+ +I Sbjct: 176 TNFINPAGLHAMGDNLYIETDSSGQPVEGIPGVDGLGTIRQGFVELSNVELVVELTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + +++ + +I +++ ML+ N+ Sbjct: 236 GQRAYDANSKIITTSDE-MLQTTNNL 260 >gi|111115607|ref|YP_710225.1| flagellar hook-basal body complex protein [Borrelia afzelii PKo] gi|216263707|ref|ZP_03435702.1| flagellar hook-basal body complex protein [Borrelia afzelii ACA-1] gi|110890881|gb|ABH02049.1| flagellar hook-basal body complex protein [Borrelia afzelii PKo] gi|215980551|gb|EEC21372.1| flagellar hook-basal body complex protein [Borrelia afzelii ACA-1] Length = 282 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 111/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L V++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDVVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPIVGKLGTGVEENEIYTLFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G+I Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQIFHNSNFESNPRRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDLSGVTVKRGF 198 + +++ T+ + + + + ++ NS ++ ++ Sbjct: 177 VSEHENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDVSLRPKIETEA 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|15596279|ref|NP_249773.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PAO1] gi|107100527|ref|ZP_01364445.1| hypothetical protein PaerPA_01001552 [Pseudomonas aeruginosa PACS2] gi|116049011|ref|YP_792187.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa UCBPP-PA14] gi|152984786|ref|YP_001349648.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PA7] gi|218892954|ref|YP_002441823.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa LESB58] gi|254234218|ref|ZP_04927541.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa C3719] gi|254239440|ref|ZP_04932762.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 2192] gi|296390554|ref|ZP_06880029.1| flagellar basal body rod protein FlgG [Pseudomonas aeruginosa PAb1] gi|313106037|ref|ZP_07792296.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 39016] gi|9946998|gb|AAG04471.1|AE004539_13 flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PAO1] gi|115584232|gb|ABJ10247.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa UCBPP-PA14] gi|126166149|gb|EAZ51660.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa C3719] gi|126192818|gb|EAZ56881.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 2192] gi|150959944|gb|ABR81969.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PA7] gi|218773182|emb|CAW28994.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa LESB58] gi|310878798|gb|EFQ37392.1| flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa 39016] Length = 261 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A + L+T+++N++N T GF+ + +F +++ I+ Sbjct: 1 MLSALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQLGTGVRVVGTQKIFTPGSLQTTEQPLDMAVNGRGFFQVLLPDGTVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG +V+++G I +P + + F VG+ G +S + +VI + Sbjct: 121 HLNSDGQIVTSNGF-----ALEPAIVVPNETQTFTVGQDGTVSVTTTGNAQPQVIGNIQT 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ TP + G TV + LE+SN N + E+ MI Sbjct: 176 ADFINPAGLQAIGNNLFLETGSSGAPQVGTPGLNGLG-TVAQNTLENSNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQNL 261 >gi|49082998|gb|AAT50899.1| PA1082 [synthetic construct] Length = 262 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 108/268 (40%), Gaps = 32/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A L+T+++N++N T GF+ + +F +++ I+ Sbjct: 1 MLSALWVSKTGLSAQGMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQLGTGVRVVGTQKIFTPGSLQTTEQPLDMAVNGRGFFQVLLPDGTVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG +V+++G I +P + + F VG+ G +S + +VI + Sbjct: 121 HLNSDGQIVTSNGF-----ALEPVIVVPNETQTFTVGQDGTVSVTTTGNAQPQVIGNIQT 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ TP + G TV + LE+SN N + E+ MI Sbjct: 176 ADFINPAGLQAIGNNLFLETGSSGAPQVGTPGLNGLG-TVAQNTLENSNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + +I ++ + +N+ Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQNLG 262 >gi|227820858|ref|YP_002824828.1| flagellar basal body rod protein FlgG [Sinorhizobium fredii NGR234] gi|227339857|gb|ACP24075.1| flagellar basal-body rod protein FlgG [Sinorhizobium fredii NGR234] Length = 262 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 110/267 (41%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + +I A + L +A+N++N +T G++ + +FS+++ + Sbjct: 1 MKALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQA 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + V G + + GS ++T +LD AL G WF +E+P G + TR G F Sbjct: 61 IVPEGAIVGLGVQTAAVRNLHVQGSLVNTSNDLDLALVGRGWFQVETPNGETVYTRSGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 G LV+ G V I +PQ V G++ + + + I + + Sbjct: 121 NTNATGQLVTIDGYTVVPG-----ITVPQDATEITVSASGQVLVRIGDATETQEIGQLTI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + ++ + I TP D +K+G+LE SN + + E+ +I Sbjct: 176 ANFVNEAGLEPQGENLFKQTAASGEPIVGTPA-DPGFAQIKQGYLESSNVDPVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 235 SAQRAYEMNSKVIQAADEMAATVSKNL 261 >gi|313682110|ref|YP_004059848.1| flagellar basal-body rod protein flgg [Sulfuricurvum kujiense DSM 16994] gi|313154970|gb|ADR33648.1| flagellar basal-body rod protein FlgG [Sulfuricurvum kujiense DSM 16994] Length = 262 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 114/263 (43%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S L+++ ++ T A+N++N +T+G++ + +F++++ + S Sbjct: 1 MMQSLYTSSTGMLSMQTQIDTTANNIANVNTMGYKKSRAEFADLMYKVMTYAGTSTSDTT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G S GS T LD A+ G +F LE P G + +R+G F Sbjct: 61 KSPTGIEVGLGVRPTSINKIFTEGSLKQTDNSLDLAITGKGFFKLELPNGTEVYSRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+ ++G++V++ G V + IP+ ++G G +S + + + L Sbjct: 121 KIDENGTIVNSDGYKLV-----PEVVIPEDATNISIGTDGIVSVTQSGQAQATQVGQISL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + E I TP E+ G +++GF+E SN + E+ +I Sbjct: 176 TSFINPAGLHAMGDNLFVETDSSGQPIEGTPGENGIG-NIRQGFVELSNVQLVVELTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + +++ + +I +++ + Sbjct: 235 TGQRAYDANSKVITTSDEMLATT 257 >gi|203288202|ref|YP_002223217.1| flagellar hook-basal body complex protein [Borrelia recurrentis A1] gi|201085422|gb|ACH94996.1| flagellar hook-basal body complex protein [Borrelia recurrentis A1] Length = 291 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 115/284 (40%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A RL +A+N++N D G++ + F E++ ND Sbjct: 10 MVRGIYTAASGMIAQRHRLEVIANNLANIDLTGYKKDLSVQKAFPEMLIRRTNDDGLYKF 69 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y S E GS TG LD AL + +F +++P G T Sbjct: 70 PKGYLETAPVVGKLGTGVEENEIYTSFEQGSLKITGNPLDLALTEEGFFVVQTPEGERYT 129 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G L++ G YPV+ I KD F + E+G+I Sbjct: 130 RNGSFTLGREGILITKDG-YPVIGEKGY---IHIKDNNFKITEQGQIFHNSTFESNPKRL 185 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ + + + + ++ ++ +S +++ ++ G Sbjct: 186 VSESENSWENYELLDNLKIVNFEKARFLKKQGSSLWYSTEISGQAKNIPINSRPKIESGV 245 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 246 LECSNVNAINEMVSMITVNRVYEANQKTIQTEDTLLGKLINEIG 289 >gi|218249434|ref|YP_002375273.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi ZS7] gi|218164622|gb|ACK74683.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi ZS7] Length = 265 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQKGKV------IATM 158 K+ + LV++ G Y VL I P++ + ++G +S K + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----ILFPEEYIQNSITISKEGIVSVKIDTSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G +++G LE SN + EM Sbjct: 176 EISRFINPAGLSAIGSNLFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|254419855|ref|ZP_05033579.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196186032|gb|EDX81008.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 246 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 7/246 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 M+ + IGL+ Q+ L + L VA+N++N DT GF+ ++ VG A + I SF Sbjct: 1 MENAAYIGLSRQMTLRRELDIVANNVANADTTGFKVEQLMVGTEVGQRARNDSIRPSASF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDA-WFALES-PRGIILTRDGRFKVTDDGSLVS 116 V GS TG LDFA+ G+ +F + G TRDG F + +G L + Sbjct: 61 VLDNGVGRDFGQGSMSETGRPLDFAIAGEGAFFTVRDGAAGEAYTRDGAFTMDPEGRLTT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G+ + I + +VG G I+Q G++ + + D + G + + G Sbjct: 121 KQGQAVL--GGGAEIVLDPALGAPSVGADGTITQSGQITGRLSVVRFD-TLGVLEKGGDG 177 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + N + + V + +G LE SN NS+ E+ +I +++ + SIT +I+ Sbjct: 178 LYRNGSNVQPVEANDVQIHQGSLEASNVNSLTEITNLIEISRAYESITRMIENTNDLSRR 237 Query: 237 AIRNIA 242 A+ + Sbjct: 238 AVERLG 243 >gi|134297196|ref|YP_001120931.1| flagellar basal body rod protein FlgG [Burkholderia vietnamiensis G4] gi|134140353|gb|ABO56096.1| flagellar basal-body rod protein FlgG [Burkholderia vietnamiensis G4] Length = 262 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 107/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++NT T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y +L I +PQ + +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQILPA----ITVPQNAQSLTIGKDGVVSVTQPGSNNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +GV + +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLEAKGENLFAETTSSGAPNVSQPGLNGAGV-LNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + + Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKT 262 >gi|332187904|ref|ZP_08389637.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. S17] gi|332012065|gb|EGI54137.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. S17] Length = 262 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 104/263 (39%), Gaps = 30/263 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------ 57 + +I A + R+ +++N++N +T GF+ + F + S Sbjct: 5 AMHIARTGLDAQDMRMRVISNNLANVNTTGFKRDRAAFETLAYQTITAPGAASSTESKYA 64 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 V G+ +T LD AL+G+ +F ++ P G + TR G F + Sbjct: 65 TGLNLGTGVRIQGTARINTQGAMQTTNNSLDMALDGEGFFQVQMPGGTLGYTRAGNFSRS 124 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSV 163 +G LV++ G Y V+ I +P+ +G G +S + I + + + Sbjct: 125 AEGLLVTSEG-YQVMPG----ITVPEGATQITIGTDGTVSATIQGQTAPAEIGQIQIATF 179 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G + ++ ++ + +++G LE SN N + E+ MI + Sbjct: 180 PNPAGLQSKGDNYLTETAASGAVNMGVAGLEGRGQIRQGMLEGSNVNVVEELVDMIETQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + +I ++ + A +N+ Sbjct: 240 AYEVNSKMIKSTDEMLQYANQNL 262 >gi|26991074|ref|NP_746499.1| flagellar basal body rod protein FlgG [Pseudomonas putida KT2440] gi|24986108|gb|AAN69963.1|AE016634_12 flagellar basal-body rod protein FlgG [Pseudomonas putida KT2440] Length = 261 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 107/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+ +++N++N T GF+ + +F++++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V S GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQVGTGVRIVGTQKSFVAGSLQTTDNPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+ +G I +P + F VG+ G +S +VI + Sbjct: 121 HLNSDGQIVTDNGY-----ALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ TP + G T+++ LE+SN +++ E+ MI Sbjct: 176 ADFINPAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQ-TLENSNVSTVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQQL 261 >gi|89902479|ref|YP_524950.1| flagellar basal-body rod FlgG [Rhodoferax ferrireducens T118] gi|89347216|gb|ABD71419.1| Flagellar basal-body rod FlgG [Rhodoferax ferrireducens T118] Length = 260 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 106/263 (40%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + +L +++N++N T GF+ F +++ S Sbjct: 1 MINSLWISKTGMEAQQMQLDVISNNLANVSTNGFKRASAVFEDLMYQNLRQAGSNSSEQS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + S G+ +G +LD A++G+ +F + P G TRDG F Sbjct: 61 QLPTGLQVGLGVRTVATSRSFAQGNLQQSGNKLDVAIQGNGFFQVTMPDGTTNYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V+ G LV+A+G P+ + + +P + G ++ + I ++ L Sbjct: 121 QVSSTGQLVTATG-LPIANG----VTVPANATSIAIAGDGTVTAQVPGTPTPQGIGSISL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + + + + TP D G + +G++E SN N + E+ MI Sbjct: 176 ASFVNPAGLDPKGQNLYAESTASGQPNSGTPGADGMGA-LMQGYVETSNVNVVQELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 QTQRAYEMNSKAIQTSDQMLQKL 257 >gi|319898637|ref|YP_004158730.1| flagellar basal-body rod protein flgG (Distal rod protein) [Bartonella clarridgeiae 73] gi|319402601|emb|CBI76146.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bartonella clarridgeiae 73] Length = 264 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQK 55 S +I A + L +A+NM+N +T GF+ + +F++++ I N ++Q Sbjct: 3 MKSLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGIPNMLNQA 62 Query: 56 I--------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + G+F+ TG LD A+ G+ WF ++ P G + TR G F Sbjct: 63 IIPEGAMIGMGVRTAAVRTVNTQGAFVQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAF 122 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +++ G +++ G I IP + V G + + L Sbjct: 123 NLSETGQIITLDGNLV-----QPVITIPIGSKNVTVSPDGTVYYQTDADPSAVEAGRLRL 177 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE +P P +D G ++ + LE SN + + EM ++I Sbjct: 178 VNFVNEVGLEPIGDNLFRETQASGAPVPGDPKDDGYG-SIMQAMLESSNVDPVKEMTELI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ +N+ Sbjct: 237 AAQRSYEMNSKVIQASDEMAAVISKNL 263 >gi|104782840|ref|YP_609338.1| flagellar basal body rod protein FlgG [Pseudomonas entomophila L48] gi|95111827|emb|CAK16551.1| Flagellar basal-body rod protein flgG [Pseudomonas entomophila L48] Length = 261 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 106/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+ +++N++N T GF+ + +F +++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + + G +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQVGTGVRVVGTQKNFQTGGLQNTENPLDMAINGRGFFQILQPDGTVSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+A G I +P + + F VG+ G +S +VI + Sbjct: 121 HLNSDGQIVNADGF-----ALEPAIVVPPEAQTFTVGQDGTVSITTAGNPAAQVIGNLQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ TP + G ++ + LE+SN +++ E+ MI Sbjct: 176 ADFINPAGLQAIGNNLFLETAASGAPQIGTPGLNGFGTSL-QKTLENSNVSTVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +K + + + Sbjct: 235 TTQRAYEMNSKVISAADKMLSFVTQQL 261 >gi|203284669|ref|YP_002222409.1| flagellar hook-basal body complex protein [Borrelia duttonii Ly] gi|201084112|gb|ACH93703.1| flagellar hook-basal body complex protein [Borrelia duttonii Ly] Length = 282 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 114/284 (40%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A RL +A+N++N D G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMIAQRHRLEVIANNLANIDLTGYKKDLSVQKAFPEMLIRRTNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y S E G TG LD AL + +F +++P G T Sbjct: 61 PKGYLETAPVVGKLGTGVEENEIYTSFEQGPLKITGNPLDLALTEEGFFVVQTPEGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G L++ G YPV+ I KD F + E+G+I Sbjct: 121 RNGSFTLGREGILITKDG-YPVIGEKGY---IHIKDNNFKITEQGQIFHNSTFESNPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ + + + + ++ ++ +S +++ ++ G Sbjct: 177 VSESENSWENYELLDNLKIVNFEKARFLKKQGSSLWYSTEISGQAKNIPINSRPKIESGV 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LECSNVNAINEMVSMITVNRVYEANQKTIQTEDTLLGKLINEIG 280 >gi|322421662|ref|YP_004200885.1| flagellar basal-body rod protein FlgG [Geobacter sp. M18] gi|320128049|gb|ADW15609.1| flagellar basal-body rod protein FlgG [Geobacter sp. M18] Length = 262 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 32/264 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + VA+N++N+ T GF+ + F +++ + + Sbjct: 1 MIRALWTAASGMQAQQLNIDVVANNLANSSTTGFKKSRADFQDLMYQTEKTTGAPATNAT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G G+ + TG ELD A++GD + ++ G TR G Sbjct: 61 TVPTGIQVGLGVRPGAVAKVFTTGTIVHTGNELDLAIQGDGFLQVQQSDGSTAYTRAGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 K G +V++ G+ PV+ + IP ++G G +S + + T+ L Sbjct: 121 KKDGQGRVVTSDGQ-PVIPE----VLIPSNATSVSIGTDGTVSVQQAGQTAATTVGTIQL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + P T ++ G ++++G++E SN + M EM MI Sbjct: 176 ASFTNPSGLNAIGKNLFLPTDSSGAATTGTAGQNGLG-SLEQGYIEQSNVSVMEEMVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 + + + I ++ + +A Sbjct: 235 VSQRAYEINSKAIQASDDMLQQAA 258 >gi|15615012|ref|NP_243315.1| flagellar basal body rod protein FlgG [Bacillus halodurans C-125] gi|10175069|dbj|BAB06168.1| flagellar hook protein [Bacillus halodurans C-125] Length = 263 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 23/261 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G++ + +L + +N++N +T G++ + F ++V N Sbjct: 1 MLRSMYSGISGMRNFQTKLDVIGNNIANVNTFGYKKGRTTFQDMVSQQLAGATAPGANRG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + S GS +T ELD + GD +F ++ TR G F Sbjct: 61 GVNPRQVGLGMQLASIDNVHTQGSLQNTNRELDLGISGDGFFQVQDGDTFYYTRSGNFYF 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSV 163 G++V+A G ++D PI +P + F++G+ G ++ + + L + Sbjct: 121 DQQGTIVNAQG-LRLMDTNGNPITVPTTAQSFSIGQDGTVTYIDEDGDLQEAGMVRLVNF 179 Query: 164 DMSQGFVRRENSGISPNIPP-----TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +G + + + T + + G LE SN + E +MI + Sbjct: 180 ANPEGLAKAGANLYLVSANSGAPLFTSAGNGGTGDIIAGTLEMSNVDLSEEFTEMIVAQR 239 Query: 219 KFNSITTLIDENEKSMLEAIR 239 F + T +I +++ + E + Sbjct: 240 GFQANTRIITTSDEILQELVN 260 >gi|254785374|ref|YP_003072803.1| flagellar basal body rod protein FlgG [Teredinibacter turnerae T7901] gi|237683455|gb|ACR10719.1| flagellar basal-body rod protein FlgG [Teredinibacter turnerae T7901] Length = 261 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 107/266 (40%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + +L+TVA+N++N TVGF+ + F +++ I+ Sbjct: 1 MHAALYVSKTGLAAQDTKLTTVANNLANASTVGFKRDRAVFEDLLYQIQRQPGAQNTEDT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + GS T LD A++G +F + P G I TR G+F Sbjct: 61 QLPSGLQLGTGVRVVGTQKQFDYGSLQVTNQPLDVAIDGRGFFQILQPDGTIGYTRAGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 +++ G +V +G I IP E +G G +S + ++ + Sbjct: 121 HLSNQGEIVDPTGLLL-----QPAITIPDNAESVTIGTDGTVSARIAGVAAPAILGNIQT 175 Query: 161 YSVDMSQGFVRRENSG-ISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G + + P++ + G V++G LE+SN + + EM MI Sbjct: 176 VDFVNPAGLQAIGGNLFLETAASGNPIQGIPGQNGLGQVEQGMLENSNVDIVEEMVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ++ + +N+ Sbjct: 236 TQRAYEMNSKIVSTADQMLQFVTQNL 261 >gi|24112486|ref|NP_706996.1| flagellar basal body rod protein FlgG [Shigella flexneri 2a str. 301] gi|30062614|ref|NP_836785.1| flagellar basal body rod protein FlgG [Shigella flexneri 2a str. 2457T] gi|24051372|gb|AAN42703.1| flagellar basal body rod protein flgG [Shigella flexneri 2a str. 301] gi|30040860|gb|AAP16591.1| flagellar basal body rod protein flgG [Shigella flexneri 2a str. 2457T] gi|281600496|gb|ADA73480.1| Flagellar basal body rod protein flgG [Shigella flexneri 2002017] gi|313650470|gb|EFS14877.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2a str. 2457T] gi|332758238|gb|EGJ88561.1| flagellar basal-body rod protein FlgG [Shigella flexneri 4343-70] gi|332759659|gb|EGJ89964.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2747-71] gi|332761424|gb|EGJ91708.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-671] gi|332767686|gb|EGJ97879.1| flagellar basal-body rod protein FlgG [Shigella flexneri 2930-71] gi|333005399|gb|EGK24917.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-218] gi|333019426|gb|EGK38709.1| flagellar basal-body rod protein FlgG [Shigella flexneri K-304] Length = 260 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G RDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYIRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G++E SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|291288379|ref|YP_003505195.1| flagellar basal-body rod protein FlgG [Denitrovibrio acetiphilus DSM 12809] gi|290885539|gb|ADD69239.1| flagellar basal-body rod protein FlgG [Denitrovibrio acetiphilus DSM 12809] Length = 262 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A + + T+++N++N + +G++ + F +++ + Sbjct: 1 MFRTLWTAATGMTAQQTNIDTISNNLANVNNIGYKKSRAHFEDLIYQELKPAGAISAAGM 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GSF TG LD A+EGD +F P G I TR+G Sbjct: 61 THPTGIQVGLGSKVAAIEKVHTQGSFQYTGVSLDIAVEGDGYFQFTLPSGEIAYTRNGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K DG+LV+++G Y + +P GE G IS + + I + L Sbjct: 121 KTDADGNLVNSNGYYL-----EPAVTVPDDVTDIAFGEDGTISVTLAGEEEAQEIGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + P + P ED G ++ + LE SN + + EM MI Sbjct: 176 SRFINPAGLKAIGKNLFMPTGASGNAVAGVPSEDGYG-SITQNTLEMSNVSVVDEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + ++ ML+ + N+ Sbjct: 235 TGQRAYEINSKAVQTGDE-MLQIVNNL 260 >gi|216263448|ref|ZP_03435443.1| flagellar basal-body rod protein FlgG [Borrelia afzelii ACA-1] gi|215980292|gb|EEC21113.1| flagellar basal-body rod protein FlgG [Borrelia afzelii ACA-1] Length = 265 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ +N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV++ G Y VL I P++ + + E+G +S + + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----IFFPEEYIRDSITISEQGIVSVKIDNSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P G +++G LE SN + EM Sbjct: 176 EISRFVNPAGLSAIGSNLFKETAGSGQEIAGIPGSKGMG-KLRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|94312671|ref|YP_585880.1| flagellar basal body distal rod protein [Cupriavidus metallidurans CH34] gi|93356523|gb|ABF10611.1| flagellar basal body distal rod protein [Cupriavidus metallidurans CH34] Length = 261 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 102/268 (38%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F E++ Sbjct: 1 MIRSLWIAKTGLDAQQTQMDVISNNLANVSTTGFKRSRAVFEEMMYQTIRQPGAMSSDQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V G+ TG D A+ G+ +F + P G TRDG F Sbjct: 61 VLPSGMQIGTGVRPVATERIHTQGNPQQTGNAKDVAIIGNGFFQVTMPDGTTSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V +G LV++SG + + I +P N+ G ++ + + L Sbjct: 121 QVDQNGQLVTSSGF-----VINPAITLPANYTSVNIARDGTVTVMQPGSTNAATVGQLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + P + +G T++ ++E SN N + E+ MI Sbjct: 176 ATFPNPTGLESMGENLYVQTDASGAPNTTVPGLNGAG-TLQNNYVEASNVNVVEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVQTSDQ-MLQRLTQMG 261 >gi|332704823|ref|ZP_08424911.1| flagellar basal-body rod protein FlgG [Desulfovibrio africanus str. Walvis Bay] gi|332554972|gb|EGJ52016.1| flagellar basal-body rod protein FlgG [Desulfovibrio africanus str. Walvis Bay] Length = 260 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 105/263 (39%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +A + + T+++N++N +T+GF+ + +F +++ + Sbjct: 1 MMRSLWTAATGMVAQQMNIDTISNNLANVNTIGFKKSRAEFEDLMYQTMKIAGTRTEGGN 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + G F +T LD A+EGD +F ++ TR G FK Sbjct: 61 VTPVGIQMGMGVRPMTVHKFFTQGDFQNTSNPLDIAIEGDGFFLVDFNGTEAFTRAGAFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT-----MGLYS 162 + ++G +V+A+G +P + + E+G ++ + + LY+ Sbjct: 121 LDNEGRMVTANGYLL-----QPEFTVPPETVNVVISEQGHLAALDRQGNELSSTDLQLYT 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + G + E P TP E+ G T+ +GFLE SN + EM MI Sbjct: 176 FQNNAGLNAIGRNLFIETEASGPATAGTPGEENVG-TLAQGFLEGSNVELVDEMVGMIIG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F + I ++ + AI Sbjct: 235 QRAFEVNSKAISTSDTMLQTAIN 257 >gi|170694394|ref|ZP_02885548.1| flagellar basal-body rod protein FlgG [Burkholderia graminis C4D1M] gi|170140817|gb|EDT08991.1| flagellar basal-body rod protein FlgG [Burkholderia graminis C4D1M] Length = 262 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 99/261 (37%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQSQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG + I +P +G G + S + + +M + Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITVPTNATSLTIGSDGVVSITVAGSTNSQQLGSMQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETASSGAPNVAQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQ 255 >gi|91785632|ref|YP_560838.1| flagellar basal body rod protein FlgG [Burkholderia xenovorans LB400] gi|91689586|gb|ABE32786.1| flgG; flagellar basal-body rod protein [Burkholderia xenovorans LB400] Length = 262 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG + I IP +G G + S + + +M + Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITIPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETASSGAPNVAQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQ 255 >gi|224531677|ref|ZP_03672309.1| flagellar basal-body rod protein FlgG [Borrelia valaisiana VS116] gi|224511142|gb|EEF81548.1| flagellar basal-body rod protein FlgG [Borrelia valaisiana VS116] Length = 265 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ ++ + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQDRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATHRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV++ G Y VL I P++ + ++G +S + + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----IFFPEEYIQNSITISDQGIVSVKIDNNNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G +K+G LE SN + EM Sbjct: 176 EISRFVNPAGLSAIGSNLFKETAGSGQEIAGIPGTEGMG-RLKQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|332981440|ref|YP_004462881.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] gi|332699118|gb|AEE96059.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] Length = 265 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 25/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------K 49 M S G++ A + R+ + +N++N +TVGF++ +V F +V Sbjct: 1 MMRSMFSGVSGLRAHQTRMDVIGNNIANVNTVGFKSSRVTFQDVFNQTIKTGSAPNVLGG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + Q A G + G T LD A+ GD +F + TR G F + Sbjct: 61 TNPQQIGLGAAVGAIDVLHTPGGIERTDNPLDLAINGDGFFVVNDGTADYYTRAGNFHLD 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLYSVD 164 DG+LV+ G Y I P + + G+IS G V + +GL Sbjct: 121 ADGNLVTPDGMYVQTAGGGNIIIDPTLYVSIVIDKTGQISGIQADGTVDTLDIVGLAKFV 180 Query: 165 MSQGFVRRENSGISPNIPP--------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + I P +D +G + G LE SN + E+ MI Sbjct: 181 NPGGLEKIGQNMYRETISSGPPATGIVQPGQDGTGY-LTPGALEMSNVDLSRELTDMIIT 239 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F + + +I +++ + E + Sbjct: 240 QRGFQANSRVITTSDEMLQELVN 262 >gi|126176154|ref|YP_001052303.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|304412506|ref|ZP_07394112.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|307307165|ref|ZP_07586903.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] gi|125999359|gb|ABN63434.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|304349148|gb|EFM13560.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|306910404|gb|EFN40835.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] Length = 261 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 113/265 (42%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 MQ++ + A + +++ +A+N++N +T GF+ +V F+++ ++ ++ Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G +T +LD A+EG +F +E P G + TRDG+F Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIEGHGFFQVEEPNGDLAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G +V++ G V I IP+ + G ++ + + + + L Sbjct: 121 YRSSEGMMVTSQGLPLV-----PNIVIPEDALTVTIANDGVVTAKMAGEAEPQDLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G R ++ +E ++G +++G LE +N N + EM +MI Sbjct: 176 VNFTNPAGLEARGDNLYRETAASGVAVEGVAGDQALGALRQGALEGANVNVVEEMVEMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ ML+ + Sbjct: 236 TQRAYEMNAKVVSASDD-MLKFLNQ 259 >gi|187925759|ref|YP_001897401.1| flagellar basal body rod protein FlgG [Burkholderia phytofirmans PsJN] gi|187716953|gb|ACD18177.1| flagellar basal-body rod protein FlgG [Burkholderia phytofirmans PsJN] Length = 262 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG + I IP +G G + S + + +M + Sbjct: 121 QTNAQGQLVTSSGYQVI-----PAITIPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETASSGAPNVAQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQ 255 >gi|302343756|ref|YP_003808285.1| flagellar basal-body rod protein FlgF [Desulfarculus baarsii DSM 2075] gi|301640369|gb|ADK85691.1| flagellar basal-body rod protein FlgF [Desulfarculus baarsii DSM 2075] Length = 231 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 17/242 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 L + + A+N++N T GF+ ++ F +++ Sbjct: 4 DQGLADAACGSLMQIRHMDVTANNLANVSTTGFKGDRLIFDDMLSREMQ----------- 52 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + GS TG LD AL GD +F + +P G LTR G FK+ +G+LV++ G + Sbjct: 53 ----VDFSQGSLQETGNPLDVALSGDGFFMIRTPGGDRLTRSGAFKMDANGALVTSEG-H 107 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI-SPN 180 VLD A P+ + + +G +SQ G +AT+ + V + + + Sbjct: 108 AVLDSAGQPVTLNPSGGQVFIDSEGNVSQDGAQVATLAVVEVQNKAALQKDGRTAFSGAD 167 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + V V +G LE SN + +M MI + F S + ++ +A+ Sbjct: 168 GQLPPTAPAADVVVNQGSLEMSNVTVVDQMVNMITAQRAFESYQKAVHSLQEIDQKAVSQ 227 Query: 241 IA 242 + Sbjct: 228 VG 229 >gi|315124200|ref|YP_004066204.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017922|gb|ADT66015.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 263 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 V G + G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMG 159 F ++G++V++ G Y +L + IP+ NV G +S Q+ I + Sbjct: 121 FTKDNEGNIVNSDG-YRLLPE----MTIPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L G ++ + P+ ++G T++ GF+E SN + EM +I Sbjct: 176 LVRFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEEMTDLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML + + Sbjct: 236 TGQRAYEAGSKAITTSDD-MLGIVNQL 261 >gi|304392511|ref|ZP_07374451.1| flagellar basal-body rod protein FlgF [Ahrensia sp. R2A130] gi|303295141|gb|EFL89501.1| flagellar basal-body rod protein FlgF [Ahrensia sp. R2A130] Length = 250 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 140/243 (57%), Gaps = 2/243 (0%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-KNDIDQKISFV 59 ++T ++ L++QLALE+RL T+ADN++N+ TVGFR V+F+E+ + D Q SF Sbjct: 6 IETGLSVSLSSQLALERRLGTLADNVANSGTVGFRATHVRFAEIEQRVTGGDESQTTSFA 65 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ LS G+ + TG LD A++G+ WFAL+ G I+TRDGRF++ +G L S +G Sbjct: 66 SRGRSVLSPTAGTLVETGARLDVAIKGEGWFALQGAAGKIMTRDGRFQMDAEGQLRSVNG 125 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 VLD P+ + +G G I Q G+ + +GLY+ D VR SGI Sbjct: 126 D-EVLDPGGAPLALNVAAGPPTIGSDGSIVQNGQQVGAIGLYAFDPGTDPVRIGTSGILA 184 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P L D +V +G++E +N + + EM +I + + F+++ ++ +++ ++ + ++ Sbjct: 185 QGAPVALVDGDAPSVLQGYVEQANVDPVREMTNLITIHRTFDNVAAMVRKSDAALEKMMQ 244 Query: 240 NIA 242 + Sbjct: 245 ILG 247 >gi|148546709|ref|YP_001266811.1| flagellar basal body rod protein FlgG [Pseudomonas putida F1] gi|148510767|gb|ABQ77627.1| flagellar basal-body rod protein FlgG [Pseudomonas putida F1] Length = 261 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+ +++N++N T GF+ + +F +++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + + GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQVGTGVRIVGTQKNFQTGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+A G I +P + F VG+ G +S +VI + Sbjct: 121 HLNSDGQIVNADGL-----ALEPAIVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ TP + G T+++ LE+SN +++ E+ MI Sbjct: 176 ADFINPAGLQAMGNNLFLETAASGAPQVGTPGLNGFGTTLQQ-TLENSNVSTVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQQL 261 >gi|163803171|ref|ZP_02197054.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] gi|159173071|gb|EDP57904.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] Length = 261 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T ELD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G +V++ G IQIP F+VG G ++ + + + L Sbjct: 121 HINSEGLMVNSQGL-----PLEPQIQIPDDAISFSVGVDGTVTTTSADDPNPQQLGQISL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + RE + ED +G ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLFRETAASGSADELIAGEDGAG-SIKQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 235 TTQRAYEMNAKVVSAADDML 254 >gi|57505521|ref|ZP_00371448.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57016068|gb|EAL52855.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 263 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 115/267 (43%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + +A + ++ ++N+SN +TVGF+ + +F++++ S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNISNVNTVGFKKSRAEFADLMYQTMKYAGTSTSATT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRG-IILTRDGR 105 V G + GS+ ST T+ D A+EG+ +F ++ P G TR+G+ Sbjct: 61 LSPSGIEVGLGVRPTAVTKIFTPGSYKSTSTDSFDMAIEGNGFFQIQLPDGTTAYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMG 159 F ++G++V+A G + + +P+ ++ + G +S Q+ I + Sbjct: 121 FTRDNEGNVVNADGYRLI-----PEMTVPEGATNISIAKDGTVSVMLAGEQEETQIGQIE 175 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L G ++ + P+ ++G ++ GF+E SN + EM +I Sbjct: 176 LVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGNIRHGFVELSNVQLVEEMTDLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I +++ ML + + Sbjct: 236 TGQRAYEAGSKAITTSDE-MLGIVNQL 261 >gi|15616948|ref|NP_240161.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681701|ref|YP_002468087.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682256|ref|YP_002468640.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471397|ref|ZP_05635396.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386809|sp|P57424|FLGG_BUCAI RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|25298916|pir||G84969 flagellar basal-body rod protein flgG [imported] - Buchnera sp. (strain APS) gi|10039013|dbj|BAB13047.1| flagellar basal-body rod protein flgG [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621989|gb|ACL30145.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624544|gb|ACL30699.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086079|gb|ADP66161.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086651|gb|ADP66732.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087237|gb|ADP67317.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087756|gb|ADP67835.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 260 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 111/263 (42%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S I A + ++ +++N++N T GF+ + F +++ + S Sbjct: 1 MIPSLWISKTGLDAQQINMNIISNNLANVSTNGFKRSRAVFEDLMYQTIREAGTNSSLET 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S E G+ T D A+ G +F ++ P G I TRDG F Sbjct: 61 TLPSGLQLGTGVRPVSTERIHTQGNLSKTDASKDVAINGSGFFQVQLPDGNIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 ++ +G LV+ SG +P++ I IP N+ G IS + ++ + L Sbjct: 121 QLDQNGQLVTNSG-FPIIPE----INIPSNSTNINIARDGVISVVVQGQTQPVLLGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + +E I TP + +GV + +G++E SN N E+ MI Sbjct: 176 INFVNNSGLESLGENLYQETQASGSPIETTPGLNGTGV-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 QTQRAYEINSKSISTSDQMLQKL 257 >gi|332088746|gb|EGI93858.1| flagellar basal-body rod protein FlgG [Shigella boydii 5216-82] Length = 260 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M +S I A + + +A+N++N T GF+ + F +++ GA ++ Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S + G S G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRSVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E TP + +G+ + +G+++ SN N E+ MI Sbjct: 176 TTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGYVDTSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + ++ + + + Sbjct: 235 QVQRAYEINSKAVSTTDQMLQKLTQ 259 >gi|56419762|ref|YP_147080.1| flagellar basal body rod protein FlgG [Geobacillus kaustophilus HTA426] gi|56379604|dbj|BAD75512.1| flagellar hook protein [Geobacillus kaustophilus HTA426] Length = 263 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 27/261 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 G+ A + +L + +N++N +T GF+ + F +++ + + G Sbjct: 1 MYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAGRGGT 60 Query: 65 Y--------------LSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKV 108 GS +TG LD A+ GD +F + G + TR G F + Sbjct: 61 NPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFVVGDASGNNRMYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSV 163 G +V+A G+Y +L + + +QIP + ++G G+++ I T+ L Sbjct: 121 DSQGYIVNADGQY-LLGVGNSRLQIPTDAKSLSIGADGKVTIVDASGTLSTIGTIQLAKF 179 Query: 164 DMSQGFVRRENSGISPNI-PPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQ 218 + G + N+ TP G T+ G LE SN + E +MI + Sbjct: 180 ANNDGLEKAGNNLFRETTNSGTPTTGAPGANGTGTIVSGALEMSNVDLAEEFTEMIVAQR 239 Query: 219 KFNSITTLIDENEKSMLEAIR 239 F + T +I +++ + E + Sbjct: 240 GFQANTRIITTSDEILQELVN 260 >gi|308273544|emb|CBX30146.1| Flagellar basal-body rod protein flgG [uncultured Desulfobacterium sp.] Length = 260 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 110/265 (41%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + A + + +++N++N +TVGF+ + F +++ + + Sbjct: 1 MLRGMWSAASGMDAQKMMIDVISNNLANVNTVGFKKSRPDFQDLMYQTMSQGGSTTTSGD 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V G +S + G F T ELD ++EG +F + S + TR G FK Sbjct: 61 QIPGGIQVGMGTMPVSVQKMFMQGDFKETKNELDLSIEGKGFFKVISNDEEVYTRAGNFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYS 162 + DG++ + +G+ + IP ++ + G ++ +G V+ + L+S Sbjct: 121 MDKDGNICTPNGE-----KLQPAMTIPSDTMTISIDKSGTVTAFGPSGQGTVVGVIELHS 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + R+ I P D G T+ +GF+E SN + + EM MI Sbjct: 176 FTNPAGLFSMGHNLYRKTDASGDAIAAAPGSDGMG-TIAQGFIEMSNVDVVEEMVAMIMA 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + +ML+ NI Sbjct: 235 QRAYEVSSKSIQTAD-NMLQMANNI 258 >gi|254251193|ref|ZP_04944511.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] gi|124893802|gb|EAY67682.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] Length = 262 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 105/267 (39%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++NT T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y +L I +PQ +G+ G +S I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQILPA----ITVPQNATSLTIGKDGVVSVTQPGSNNAVQIGSLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLEAKGENLFAETTSSGAPNVSQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + +++ ML+ + + Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQM 260 >gi|86151551|ref|ZP_01069765.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 260.94] gi|85841180|gb|EAQ58428.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 260.94] Length = 263 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 V G + G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTNTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMG 159 F ++G++V++ G Y +L + IP+ NV G +S Q+ I + Sbjct: 121 FTKDNEGNIVNSDG-YRLLPE----MTIPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L G ++ + P+ ++G T++ GF+E SN + EM +I Sbjct: 176 LVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEEMTDLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML + + Sbjct: 236 TGQRAYEAGSKAITTSDD-MLGIVNQL 261 >gi|254255089|ref|ZP_04948406.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] gi|124899734|gb|EAY71577.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] Length = 261 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 31/260 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I A + +L T+A+N++N +TVGF+ + F ++ + +I+ A Sbjct: 1 MNHALWISKTGIQAQDAKLQTIANNLANVNTVGFKRDRAVFEDLFYRTEQQPGAQIADNA 60 Query: 61 SGKEYL------------SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 +G + G+ +TG LD A+ GD + +E G TR G+ + Sbjct: 61 TGPGVQMGNGTRLVGTQKTFTAGNLQTTGQPLDVAIVGDGFLQVEMANGETGYTRAGQLR 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLY 161 D+G L +A G V I IP +GE G +S + + L Sbjct: 121 RNDEGRLTNAQGLPLV-----PTIDIPADATSVTIGENGTVSVTTGSSAVPTEVGRLQLA 175 Query: 162 SVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G + + P P D GV V++G LE SN ++ EM +MI Sbjct: 176 NFVNPAGLLAVGGNLFVETGASGPPSEGEPGADGLGV-VRQGALEGSNVQAVEEMVEMIT 234 Query: 216 LTQKFNSITTLIDENEKSML 235 + + T ++ + M Sbjct: 235 AQRTYEMSTKVLSAADSMMQ 254 >gi|315637964|ref|ZP_07893150.1| flagellar basal-body rod protein FlgG [Campylobacter upsaliensis JV21] gi|315481999|gb|EFU72617.1| flagellar basal-body rod protein FlgG [Campylobacter upsaliensis JV21] Length = 263 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 115/267 (43%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + +A + ++ ++N+SN +TVGF+ + +F++++ S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNISNVNTVGFKKSRAEFADLMYQTMKYAGTSTSATT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRG-IILTRDGR 105 V G + GS+ ST T+ D A+EG+ +F ++ P G TR+G+ Sbjct: 61 LSPSGIEVGLGVRPTAVTKVFTPGSYKSTSTDSFDMAIEGNGFFQIQLPDGTTAYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMG 159 F ++G++V+A G + + +P+ ++ + G +S Q+ I + Sbjct: 121 FTRDNEGNVVNADGYRLI-----PEMTVPEGATNISIAKDGTVSVMLAGEQEETQIGQIE 175 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L G ++ + P+ ++G ++ GF+E SN + EM +I Sbjct: 176 LVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGNIRHGFVELSNVQLVEEMTDLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I +++ ML + + Sbjct: 236 TGQRAYEAGSKAITTSDE-MLGIVNQL 261 >gi|296157454|ref|ZP_06840289.1| flagellar basal-body rod protein FlgG [Burkholderia sp. Ch1-1] gi|295892226|gb|EFG72009.1| flagellar basal-body rod protein FlgG [Burkholderia sp. Ch1-1] Length = 262 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F ++ P G TRDG F Sbjct: 61 ELPSGIQLGTGVQQVATERLYTQGNLQQTGNSKDVAINGQGFFQVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + G LV++SG + I IP +G G + S + + +M + Sbjct: 121 QTNAQGQLVTSSGYQVIPG-----ITIPNNATSLTIGSDGVVSITVAGSTNSQQLGSMQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + P + +G T+ +G++E SN N + E+ MI Sbjct: 176 ATFINPAGLDAKGENLFAETASSGAPNVAQPGLNGAG-TLNQGYVEASNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + + +++ + Sbjct: 235 QTQRAYEINSKAVTTSDQMLQ 255 >gi|307823533|ref|ZP_07653762.1| flagellar basal-body rod protein FlgG [Methylobacter tundripaludum SV96] gi|307735518|gb|EFO06366.1| flagellar basal-body rod protein FlgG [Methylobacter tundripaludum SV96] Length = 262 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 103/266 (38%), Gaps = 32/266 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + + + + A + R++ +++N++N +T GF+ + F +++ + Sbjct: 3 ERALWVAKSGLDAQQTRMAVISNNLANVNTTGFKRGRAVFEDLMYQNIRQVGAQSTQNTQ 62 Query: 54 -----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 Q + V + G+ T LD A+ G + + P G TRDG K Sbjct: 63 LPTGLQLGTGVRTVATEKLHTQGNVQPTENALDVAINGRGFLQILMPNGDTNYTRDGSLK 122 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLY 161 + G LV++ G + I +PQ +G G +S V+ + Sbjct: 123 LDATGQLVTSGGL-----TLNPAITVPQDALSVTIGTDGTVSALQPGVAAPTVLGQIQTA 177 Query: 162 SVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G + RE++ I TP + G T+ +G LE SN N + E+ MI Sbjct: 178 NFINPTGLEAVGENLYRESAASGAPIVGTPGQAEYG-TLTQGSLETSNVNVVEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ + + + Sbjct: 237 TQRAYEMNSKAISTTDQMLSFVTQQL 262 >gi|312111671|ref|YP_003989987.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] gi|311216772|gb|ADP75376.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] Length = 268 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 30/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++A + +L + +N++N +T GF+ + F ++V G N Sbjct: 1 MLRSMYSGISAMKNFQVKLDVIGNNIANVNTYGFKKGRTIFKDLVSQQIAGASGPTANRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 V G + GS TG LD A+ GD +F LE G + TR G F Sbjct: 61 GVNPKQVGLGMQLAAIDTVHTQGSTQPTGRPLDLAISGDGFFVLEDANGTNRLYTRAGNF 120 Query: 107 KVTD----DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV--IAT 157 + + +VSA G+Y + I+IP + ++G G +S G++ Sbjct: 121 YLDAGDGTNRYIVSADGRYLLGTSG--RIRIPVTAQSVSIGTDGTVSYVDANGQLQTAGK 178 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQ 212 + L ++G + ++ P + D T+ G LE SN + E + Sbjct: 179 IRLAKFSNNEGLEKVGDNLFRPTANSGDPQIGDVGDNGTGTIVSGALEMSNVDLAEEFTE 238 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 MI + F + T +I +++ + E + Sbjct: 239 MIVAQRGFQANTRIITTSDEILQELVN 265 >gi|330445350|ref|ZP_08309002.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489541|dbj|GAA03499.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 262 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 112/265 (42%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVGF+ + F ++ N + + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T +D +EGD +F + P G I TR+G+F Sbjct: 61 TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG LV++ YPV I +P+ VG GE+S Q+ +V+ + Sbjct: 121 TINADGQLVTSGSGYPVQPE----IVVPEDAVGITVGTDGEVSARIRGEQENQVLGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E G+ ++++ LE SN N E+ MI Sbjct: 177 VDFINPGGMEPIGQNLFLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 237 AQRVYEMNSKVISTVDQ-MLSYVNQ 260 >gi|319405401|emb|CBI79020.1| Flagellar basal-body rod protein flgG [Bartonella sp. AR 15-3] Length = 264 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQK 55 S +I A + L +A+NM+N +T GF+ + +F++++ + N ++Q Sbjct: 3 MKSLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGVPNMLNQA 62 Query: 56 I--------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + G+F+ TG LD A+ G+ WF ++ P G + TR G F Sbjct: 63 IIPEGAMIGMGVRTAAVRTVNTQGAFVQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAF 122 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +++ G +++ G + IP + V G I + L Sbjct: 123 NLSETGQIITLDGNLV-----QPVVTIPIGSKNITVSSDGTIYYQTDTDPNAVEAGRLRL 177 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE +P P ED G ++ + LE SN + + EM ++I Sbjct: 178 VNFVNEVGLEPIGDNLFRETQASGAPVPGDPKEDGYG-SIMQAMLETSNVDPVKEMTELI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ +N+ Sbjct: 237 AAQRSYEMNSKVIQASDEMAAVVSKNL 263 >gi|260437440|ref|ZP_05791256.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] gi|292810072|gb|EFF69277.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] Length = 256 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 21/256 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND-----I 52 M + G + +RL V++N++N+ T ++ F +++ ND I Sbjct: 1 MVRALYTGATGMVNEMKRLDVVSNNLANSATTAYKKEGATSQAFKDMLAIKINDETDSYI 60 Query: 53 DQKISF----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGI---ILTRD 103 D+ I + V G+ Y G+ TG D AL G+ +FA+ G TRD Sbjct: 61 DRPIGYMSLGVKIGETYTDYSTGNLRETGNTYDLALSGNGFFAISYADKNGTESVRYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F V +G L++ G + VL I IP E ++ E G I G+ +A + + Sbjct: 121 GSFTVNSEGILMTKDGDF-VLGDDGGLITIPVGTE-VSINESGIIEADGEEVARLQITDF 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + ++++ + I + G V +G+LE SN N + EM MI + + + S Sbjct: 179 EDYD-YLKKFGENMYTAIDGATTKAAQG-KVYQGYLESSNVNVVSEMVNMITIARDYESS 236 Query: 224 TTLIDENEKSMLEAIR 239 +I + ++ A+ Sbjct: 237 QKVIQSIDSTLERAVN 252 >gi|238927618|ref|ZP_04659378.1| possible flagellar basal-body rod protein [Selenomonas flueggei ATCC 43531] gi|238884543|gb|EEQ48181.1| possible flagellar basal-body rod protein [Selenomonas flueggei ATCC 43531] Length = 266 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND------ 51 M I + + + +A+N++N T GF+ + +F ++ ND Sbjct: 1 MWRGLYIAASGMITETKHTDMIANNLANAATTGFKRDDMAIREFEPMLLRRINDHSADTD 60 Query: 52 ---------------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + A + G+ +TG DF + G +F +++P+ Sbjct: 61 VTSFKGFRLRSGAPIVGTLGLGSAVDEIATDHLQGALQATGNTYDFGISGQGYFVVDTPQ 120 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G TRDG F + G L + G+ VL PI IP V G I G+ IA Sbjct: 121 GPRYTRDGSFYRSSTGQLQTVRGQ-AVLSAQGQPITIPATAHHVTVSSDGRIYSDGRQIA 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G D + +++ ++ + + +GV +++G LE SN + + EM ++I+ Sbjct: 180 QLGFVQFDEPKAVIKQGDN-LYRPQQGAQPQQATGV-IEQGMLEMSNTSVVTEMVELINN 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + + + + +A+ ++ Sbjct: 238 YRVYEAGSKAVQTQDTLLDKAVNDVG 263 >gi|323495375|ref|ZP_08100452.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] gi|323310298|gb|EGA63485.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] Length = 262 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVG++ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 V D+G +V++ Y + I IP+ +G GE+S Q +V+ + Sbjct: 121 TVNDEGVIVTSGAGYALEPE----IAIPEDAISVTIGTDGEVSVRVRGQQDNQVVGQIAT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G V++ LE SN N E+ MI Sbjct: 177 VDFVNPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGEVRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|163802601|ref|ZP_02196493.1| polar flagellar FlgG [Vibrio sp. AND4] gi|159173684|gb|EDP58503.1| polar flagellar FlgG [Vibrio sp. AND4] Length = 262 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++T+++N++N TVGF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDMMVEGDGFFQVTLPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G+LV++ Y V I IP+ VG GE+S Q V+ + + Sbjct: 121 TLDGEGTLVTSGSGYAVEPE----IVIPEDAISITVGTDGEVSVRVRGEQNNVVVGQLTI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ +++ LE SN N E+ MI Sbjct: 177 TDFVNPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGEIRQSMLEASNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISSVDKMM 255 >gi|57237001|ref|YP_178802.1| flagellar basal body rod protein FlgG [Campylobacter jejuni RM1221] gi|86149818|ref|ZP_01068047.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153387|ref|ZP_01071591.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597119|ref|ZP_01100355.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 84-25] gi|121613571|ref|YP_001000394.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81-176] gi|148926663|ref|ZP_01810344.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414985|ref|YP_001482241.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81116] gi|167005337|ref|ZP_02271095.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355540|ref|ZP_03222311.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562337|ref|YP_002344116.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283956107|ref|ZP_06373594.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] gi|57165805|gb|AAW34584.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni RM1221] gi|85839636|gb|EAQ56896.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843113|gb|EAQ60324.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249438|gb|EAQ72398.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 81-176] gi|88190808|gb|EAQ94781.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 84-25] gi|112360043|emb|CAL34835.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845182|gb|EDK22277.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385949|gb|ABV52264.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346774|gb|EDZ33406.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792427|gb|EFC31209.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] gi|284925954|gb|ADC28306.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni IA3902] gi|307747622|gb|ADN90892.1| Flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni M1] gi|315058161|gb|ADT72490.1| Flagellar basal-body rod protein flgG [Campylobacter jejuni subsp. jejuni S3] gi|315926812|gb|EFV06186.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315931897|gb|EFV10852.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 327] Length = 263 Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 V G + G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMG 159 F ++G++V++ G Y +L + IP+ NV G +S Q+ I + Sbjct: 121 FTKDNEGNIVNSDG-YRLLPE----MTIPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L G ++ + P+ ++G T++ GF+E SN + EM +I Sbjct: 176 LVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEEMTDLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML + + Sbjct: 236 TGQRAYEAGSKAITTSDD-MLGIVNQL 261 >gi|148976396|ref|ZP_01813102.1| flagellar basal body rod protein FlgG [Vibrionales bacterium SWAT-3] gi|145964219|gb|EDK29475.1| flagellar basal body rod protein FlgG [Vibrionales bacterium SWAT-3] Length = 262 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N T+GF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F +E P G +R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG++V++ YP+ I IP+ VG GE+S Q V+ + + Sbjct: 121 TLNGDGAIVTSGQGYPLQPE----IVIPEDAISVTVGNDGEVSVRLRGEQNNVVVGQITI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G +++ LE SN N E+ MI Sbjct: 177 TDFVNPGGLEPVGQNLYLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISSVDKMM 255 >gi|312148533|gb|ADQ31192.1| flagellar basal-body rod protein FlgG [Borrelia burgdorferi JD1] Length = 265 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV+ G Y VL I P++ + E+G +S + + + Sbjct: 121 KIDSNRELVTNQG-YKVLPN----ILFPEEYIQNSITISEEGIVSVKIDTSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G +++G LE SN + EM Sbjct: 176 EISRFINPAGLSAIGSNLFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|219684180|ref|ZP_03539124.1| flagellar basal-body rod protein FlgG [Borrelia garinii PBr] gi|219672169|gb|EED29222.1| flagellar basal-body rod protein FlgG [Borrelia garinii PBr] Length = 265 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ +N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILMPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQKGK------VIATM 158 K+ + LV++ G Y VL I P++ + E+G +S K + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----IFFPEEYIQNSITISEQGIVSVKTDNSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G+ +++G LE SN + EM Sbjct: 176 EISRFVNPAGLSAIGSNLFKETAGSGQEITGIPGSEGMGI-LRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|111115606|ref|YP_710224.1| flagellar basal body rod protein FlgG [Borrelia afzelii PKo] gi|110890880|gb|ABH02048.1| flagellar basal-body rod protein [Borrelia afzelii PKo] Length = 265 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ +N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV++ G Y VL I P++ + E+G +S + + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----IFFPEEYIRNSITISEQGIVSVKIDNSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P G +++G LE SN + EM Sbjct: 176 EISRFVNPAGLSAIGSNLFKETAGSGQEIAGIPGSKGMG-KLRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|148258452|ref|YP_001243037.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] gi|146410625|gb|ABQ39131.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] Length = 246 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 14/240 (5%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQKISFVAS 61 I L+ +AL++RL A+N++N+ T G+R ++ F E + I ++ +S V + Sbjct: 8 ISLSRLMALQRRLDVAANNVANSQTTGYRAKQLAFQEYLKPDKPPEIGEKPERPLSLVDA 67 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + S G+F STG LD A+ G+A+FA+++ +G TRDG F + G LV+ G Sbjct: 68 ALPFTSSASGAFRSTGNPLDLAINGNAYFAIQTSQGERYTRDGSFSLDAKGRLVTLEG-L 126 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 PVL V I +P + + G +S + + + L S D + + Sbjct: 127 PVLGDKGV-ITVPPRAGEITIDPSGRVSMQQVELGKLKLVSFDPGARLEAAGGNLLRSAQ 185 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P P + TV + LE SN EM ++ L + + + L+ +++ I I Sbjct: 186 P--PKANAGSATVLQAMLEQSNVQPTIEMSRLAELNRSYEVASKLLKDSQD-----INEI 238 >gi|120597307|ref|YP_961881.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] gi|120557400|gb|ABM23327.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] Length = 261 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 113/265 (42%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 MQ++ + A + +++ +A+N++N +T GF+ +V F+++ ++ ++ Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G +T +LD A++G +F +E P G + TRDG+F Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEEPNGDLAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G +V++ G V I IP+ + G ++ + + + + L Sbjct: 121 YRSSEGMMVTSQGLPLV-----PNIVIPEDALTVTIASDGVVTAQMAGEAEPQDLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G R ++ +E ++G +++G LE +N N + EM +MI Sbjct: 176 VNFTNPAGLEARGDNLYRETAASGVAVEGVAGDQALGALRQGALEGANVNVVEEMVEMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ ML+ + Sbjct: 236 TQRAYEMNAKVVSASDD-MLKFLNQ 259 >gi|254485859|ref|ZP_05099064.1| flagellar basal-body rod protein FlgF [Roseobacter sp. GAI101] gi|214042728|gb|EEB83366.1| flagellar basal-body rod protein FlgF [Roseobacter sp. GAI101] Length = 237 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 6/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L Q+ L + + VA+N++N T G+R+ V FSE V + D +S Sbjct: 1 MDNASYTILTRQMGLAREMQMVANNIANAATTGYRSEGVIFSEFVQTV--DRGPSLSMGT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + + G+ T DF +EGD +F +E+P G LTR G F G LV+ G Sbjct: 59 ANVQNTNYMQGALTQTNGTFDFGIEGDGYFLIETPAGERLTRAGSFTPNSAGELVTYDG- 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VLD PI +PQ V G S G IA +G+ S VR + + Sbjct: 118 FRVLDAGGGPIFVPQDAGALGVSSDGTFSVNGAPIAQLGIVSPIAPLDMVREDGVMFRAD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P + V +GF E SN +++ ++ +MI + + + + ++ ++ + A+++ Sbjct: 178 EGVEPAVN---ARVVQGFTEGSNVDAVSQLARMIEVQRAYEMGQSFLESEDERIRTALKS 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|170748127|ref|YP_001754387.1| flagellar basal body rod protein [Methylobacterium radiotolerans JCM 2831] gi|170654649|gb|ACB23704.1| flagellar basal body rod protein [Methylobacterium radiotolerans JCM 2831] Length = 246 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 141/247 (57%), Gaps = 9/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ+S + L+AQ+ALEQRL+TVA N++N TVG+R +VKF ++ + + ++F Sbjct: 1 MQSSLYVTLSAQMALEQRLNTVAANVANLGTVGYRAEEVKFETILSQAGH---RDVAFAT 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ +LS++ G I T + LD L+GD W A+ PRG++ TRDGR +VT G L G+ Sbjct: 58 PGETFLSRKAGPLIKTDSPLDVGLQGDGWLAVRGPRGMVYTRDGRMQVTAAGDLQDLDGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +LD P+ + + +G+ G +SQ I +G++ +D + R ++ + Sbjct: 118 -AILDPGGSPLTVDPEGPPLTIGQDGIVSQGTNQIGALGVFRLDPAAKLTRVAGGAVASD 176 Query: 181 IPPTPLEDLS-----GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 +P P+ D + V V++GF E +N N + EM ++I +T+ F S + E+E S+ Sbjct: 177 VPGRPILDFNQRDETTVRVQQGFQEGANVNPVMEMSRLIEITRAFQSAAAAVAESESSLQ 236 Query: 236 EAIRNIA 242 +AIR + Sbjct: 237 DAIRGLG 243 >gi|258621051|ref|ZP_05716085.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM573] gi|258625279|ref|ZP_05720187.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM603] gi|262166280|ref|ZP_06034017.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM223] gi|262170827|ref|ZP_06038505.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|258582452|gb|EEW07293.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM603] gi|258586439|gb|EEW11154.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM573] gi|261891903|gb|EEY37889.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|262025996|gb|EEY44664.1| flagellar basal-body rod protein FlgG [Vibrio mimicus VM223] Length = 262 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ + + A + ++T+++N++N TVGF+ + F ++ N + S Sbjct: 1 MQPALWVSKTGLDAQQTNIATISNNLANASTVGFKKGRAVFEDLFYQNINQPGAQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 RLPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G++V++ Y + I IP+ +G GE+S Q +V+ + Sbjct: 121 TLDDEGAIVTSGSGYRLQPE----IVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ V++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|330502736|ref|YP_004379605.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina NK-01] gi|328917022|gb|AEB57853.1| flagellar basal body rod protein FlgG [Pseudomonas mendocina NK-01] Length = 261 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + L+T+++N++N T GF+ + +F +++ I+ + S Sbjct: 1 MLPALWVSKTGLSAQDMNLTTISNNLANVATTGFKRDRAEFEDLLYQIRRQPGGQTSQDS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQLGTGVRVVGTQKIFTAGSLQTTEQPLDLAVNGRGFFQILQPDGTVSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG +V++ G I +P + F VGE G +S + +VI + L Sbjct: 121 HLNSDGQIVTSQGF-----ALEPAIVLPAEVRTFTVGEDGTVSVTTAGNAQAQVIGNIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G N+ P + G T+ + LE+SN + + E+ MI Sbjct: 176 ADFVNPAGLEAIGNNLFLETGSSGAPQVGNPGLNGLGTTL-QNTLENSNVSVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQNL 261 >gi|261341492|ref|ZP_05969350.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] gi|288316288|gb|EFC55226.1| flagellar basal-body rod protein FlgG [Enterobacter cancerogenus ATCC 35316] Length = 261 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I A + ++S +++N++N +T GF+ +V F+++ + ++ Sbjct: 1 MNPALWISKTGLAAQDAKMSAISNNLANVNTTGFKRDRVMFADLFYQNQRTPGGQLDQNN 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + G+ +TG +LD A+ G +F +E+ G I TR G F Sbjct: 61 TSPTGIQFGTGVKILGTQKEFSTGNIQNTGQKLDVAITGQGFFQVETSDGDIAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG L +A G V I++P + +G+ G ++ + + L Sbjct: 121 QKNPDGMLTNAQGLPLV-----PQIELPDNVKDIQIGKDGTVTATVAGETDPVELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + + E+ G +++G LE SN + EM MI Sbjct: 176 VNFVNPAGLEAIGGNLYRETAASGEAVEGVAGEEAFG-QLEQGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + ++ + + Sbjct: 235 TVQRAYEMNAKMVSAADDML 254 >gi|149189838|ref|ZP_01868118.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148836324|gb|EDL53281.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 261 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 106/259 (40%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V GS +TG +LD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 QLPTGVQLGSGVRVVGTQKVFTQGSAQNTGQDLDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 V +G +V++ G IQIP +VG G ++ + + + L Sbjct: 121 HVNSEGLMVNSQGL-----PLEPQIQIPDNALTLSVGVDGTVTATTADGPAPQDLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQMIH 215 G + E+L ++K+G LE SN + EM MI Sbjct: 176 AKFVNPAGLEAIGGNLFKETEASGQAEELIAGEEGAGSIKQGALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|294500931|ref|YP_003564631.1| flagellar hook protein FlgE [Bacillus megaterium QM B1551] gi|294350868|gb|ADE71197.1| flagellar hook protein FlgE [Bacillus megaterium QM B1551] Length = 264 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 24/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + +L + +N++N +T G++ + F ++V + Sbjct: 1 MLRSMYSGISGMKNFQTKLDVLGNNIANVNTYGYKKGRTTFQDLVSQQVAGATAPGANRG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 G + GS STG LD A+ GD +F + + TR G F + Sbjct: 61 GVNAKQVGLGSKIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVVNDGKSDYYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG---EISQKGKV---IATMGLYS 162 G+LV+ G Y V I IP + +++G G I G + T+ L Sbjct: 121 DSSGNLVTGDGLY-VQKTGGGNINIPSTSKSYSIGADGKVNIIDANGNITPNTPTIELAK 179 Query: 163 VDMSQGFVRRENSGISPNI-PPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLT 217 ++G + + + ++ PL G T+ LE SN + E MI Sbjct: 180 FANNEGLEKAGGNLFAKSVNSGNPLVGNPGASGTGTLVSSALEMSNVDLSEEFTDMIVAQ 239 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F + T +I +++ + E + Sbjct: 240 RGFQANTRIITTSDEILQELVN 261 >gi|308050370|ref|YP_003913936.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] gi|307632560|gb|ADN76862.1| flagellar basal-body rod protein FlgG [Ferrimonas balearica DSM 9799] Length = 262 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 MQ + I A + ++T+++N++N TVG++ + F +++ N Sbjct: 1 MQPALWISKTGLDAQQTDIATISNNLANASTVGYKKSRAIFEDLLYQTINQAGGISSQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + G+ ++T LD +EG +F ++ P G +R+G+F Sbjct: 61 ELPAGLTLGAGTKVAATQRIFSQGNMLTTDNSLDLMIEGPGFFEIQLPDGTIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G LV+ + + + IQ+P+ + V +GE+S + +VI + + Sbjct: 121 ALDDEGQLVTPGAGFLL----NPGIQVPEDAQSITVSGEGEVSVRVPGAAENQVIGQIEI 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E I P D G T+++G LE SN N E+ MI Sbjct: 177 ANFVNPTGLEPIGQNMFLETGASGAPIQGVPGLDGLG-TLRQGALETSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 236 ESQRIYEMNSKVISTVDQMLANLNQQL 262 >gi|121602345|ref|YP_989400.1| flagellar basal body rod protein FlgG [Bartonella bacilliformis KC583] gi|120614522|gb|ABM45123.1| flagellar basal-body rod protein FlgG [Bartonella bacilliformis KC583] Length = 264 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 S +I A + L +A+N++N +T G++ + +F++++ + Sbjct: 3 MRSLSIAATGMAAQQTNLDVIANNLANINTTGYKRARAEFADLMYVTDRAVGVPNMMNQA 62 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + G+FI TG LD A+ G+ WF ++ P G + TR G F Sbjct: 63 IVPEGVMVGMGVRTAAVRTVNTQGAFIQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAF 122 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +++ G +V+ G I IP + V G + + L Sbjct: 123 NLSETGQVVTLDGNVV-----QPAITIPIGSKSITVSPDGTVFYKPAEEADPVEAGRLNL 177 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE +P P ED G ++ + LE SN + + E+ ++I Sbjct: 178 VNFVNEVGLEPVGDNLFRETPASGAPVPGNPKEDGYG-SIMQATLEASNVDPVKEITELI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ +N+ Sbjct: 237 TAQRSYEMTSKVIQASDEMAAVVSKNL 263 >gi|330875986|gb|EGH10135.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967093|gb|EGH67353.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. actinidiae str. M302091] Length = 262 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 107/268 (39%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF++ + +F +++ IK Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V + GS +T LD A+ G +F + P G +RDG F Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMG 159 + G +V+A+G I +PQ + F VG+ G +S +VI + Sbjct: 121 HLNSTGQIVTATGY-----ALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATSQVIGNIQ 175 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 G + TP + G T+ + LE+SN +++ E+ M Sbjct: 176 TADFINPAGLQAIGGNLYLETASSGAPQIGTPGLNGLGPTL-QNTLENSNVSTVEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + +I ++ + +N+ Sbjct: 235 ITTQRAYEMNSKVISTADQMLQNLTQNL 262 >gi|310659662|ref|YP_003937383.1| flagellar component of cell-distal portion of basal-body rod [Clostridium sticklandii DSM 519] gi|308826440|emb|CBH22478.1| flagellar component of cell-distal portion of basal-body rod [Clostridium sticklandii] Length = 266 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 114/269 (42%), Gaps = 34/269 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--------------A 47 + + A + + T+++N++N +T GF+ K +F +++ Sbjct: 1 MRALWTAASGMRAQQLNMDTISNNLANVNTTGFKKQKTEFKDLLYTSMKSVSNDPELGEP 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDG 104 + I + VA+ + + + G+ T D ALEG +F +E+P G + TRDG Sbjct: 61 VNLQIGHGVRPVATSRLFTN---GNLEKTENPTDVALEGPGFFVVENPTGNPEQLFTRDG 117 Query: 105 RFKVTDDG---SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIA 156 FK + DG +LV++ G Y VL I++ F++ E G ++ + + + Sbjct: 118 NFKFSVDGDVMTLVTSQG-YTVLSTDDDVIEVESTMRNFSISEGGMVTAQDEAGEIVELG 176 Query: 157 TMGLYSVDMSQGFVRRENSGISPNI----PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + + +G N+ S P ++ + +GFLE SN + EM + Sbjct: 177 EIQIVQFINPEGLQAMGNNFFSLTANSGEPVIEEDESKDTKLYQGFLETSNVQLVDEMVR 236 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I + M + + ++ Sbjct: 237 MIMAQRAYEINSKSIQTADDMM-QTVNSL 264 >gi|114706771|ref|ZP_01439671.1| flagellar basal-body rod protein [Fulvimarina pelagi HTCC2506] gi|114537719|gb|EAU40843.1| flagellar basal-body rod protein [Fulvimarina pelagi HTCC2506] Length = 260 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 103/257 (40%), Gaps = 31/257 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I A E + +A+N++N +T GF+ + +F++++ ++ + Sbjct: 1 MRALAIAATGMNAQETNVEVIANNIANVNTTGFKRARAEFTDLLYQVERAKGVAAAGAEG 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G+ TG +LD AL G+ WF ++ P G I TRDG F Sbjct: 61 VVPEGAQLGLGVRLAAIRNVHLQGALKETGNKLDLALNGEGWFQIQGPGGAIRYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYS 162 +G +V+ G + +P V E G++ + + + + L + Sbjct: 121 NTNAEGQIVTLDGYLV-----DPELTVPANTSEIVVNEAGQVYARVEGELQDVGQLTLAT 175 Query: 163 VDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + G + S + P + GV V +G+LEDSN + + E+ ++I Sbjct: 176 FANNAGLHAEGGNLFSETVASGAPVVGVPGDPGYGV-VHQGYLEDSNVDPVKEISELISA 234 Query: 217 TQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 235 QRAYEMNSKIISAADEM 251 >gi|297570291|ref|YP_003691635.1| flagellar basal-body rod protein FlgG [Desulfurivibrio alkaliphilus AHT2] gi|296926206|gb|ADH87016.1| flagellar basal-body rod protein FlgG [Desulfurivibrio alkaliphilus AHT2] Length = 260 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-------DID 53 M + G + +L T+++N++N +T GF+ +V+F ++ D Sbjct: 1 MIRALYSGTTGMRGQQLQLDTISNNLANVNTAGFKKSRVQFEDLYYQEMRAVGVETVDGG 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 Q S + G ++ GS TG +LD A+EG +F + TR G F Sbjct: 61 QVPSGIQVGLGVIATSTQKLFTQGSIHETGNDLDLAVEGRGFFQVIRDGEEFYTRSGNFT 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI-----ATMGLYS 162 DG +V+ +G D IP +VG G I K + L++ Sbjct: 121 RDADGFIVTQNG-----DRLQPEFAIPADTVTLSVGTDGLIQAKNAAQEIIAEGQLTLHN 175 Query: 163 VDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + P I P D +GV + + F+E SN + E+ +I Sbjct: 176 FINPGGLRAEGGNLFRPTEASGDPIESDPGTDGAGV-ILQNFIEVSNVDVTEELVNLIIT 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + F + + ++ +LE + Sbjct: 235 QRAFEMNSKSVQTADQ-LLEVANTL 258 >gi|146294548|ref|YP_001184972.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] gi|145566238|gb|ABP77173.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] Length = 261 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 113/265 (42%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 MQ++ + A + +++ +A+N++N +T GF+ +V F+++ ++ ++ Sbjct: 1 MQSALWVSKTGLTAQDTKMTAIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDALN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G +T +LD A++G +F +E P G + TRDG+F Sbjct: 61 NLPSGLQLGAGTRVVGTQKIFTTGDMQNTSQQLDLAIQGHGFFQVEEPNGDLAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G +V++ G V I IP+ + G ++ + + + + L Sbjct: 121 YRSSEGMMVTSQGLPLV-----PNIVIPEDALTVTIASDGVVTAQMAGEAEPQDLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G R ++ +E ++G +++G LE +N N + EM +MI Sbjct: 176 VNFTNPSGLEARGDNLYRETAASGVAVEGVAGDQALGALRQGALEGANVNVVEEMVEMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ ML+ + Sbjct: 236 TQRAYEMNAKVVSASDD-MLKFLNQ 259 >gi|238028847|ref|YP_002913078.1| flagellar basal body rod protein FlgG [Burkholderia glumae BGR1] gi|237878041|gb|ACR30374.1| Flagellar basal-body rod protein [Burkholderia glumae BGR1] Length = 262 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 108/269 (40%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++N T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGNLQQTGNSRDVAINGQGFFQVLMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + + G LV+++G Y VL I +PQ + +G G ++ I +M L Sbjct: 121 QANNQGQLVTSAG-YQVLPA----ITVPQNAQSLTIGADGVVTVTQPGSTNAVQIGSMQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + +G + + TP + +G ++ +G++E SN N + E+ MI Sbjct: 176 ATFINPEGLNALGQNLFAETTSSGAPNVTTPGLNGAG-SLNQGYVESSNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|170722889|ref|YP_001750577.1| flagellar basal body rod protein FlgG [Pseudomonas putida W619] gi|169760892|gb|ACA74208.1| flagellar basal-body rod protein FlgG [Pseudomonas putida W619] Length = 261 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+ +++N++N T GF+ + +F +++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + + GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQVGTGVRIVGTQKNFQTGSLQTTENPLDMAVNGRGFFQVLQPDGTVSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+A+G + +P + F VG+ G +S +VI + Sbjct: 121 HLNSDGQIVTANGF-----ALEPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ TP + G T+++ LE+SN +++ E+ MI Sbjct: 176 ADFINPAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTTLQQ-TLENSNVSTVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQQL 261 >gi|37525843|ref|NP_929187.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785272|emb|CAE14213.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 260 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 102/264 (38%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + + +A+N++N T GF+ + F +++ GA+ ++ Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAIFEDLLYQNIRQPGAMSSEQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + S + G G+ T + A+ G +F ++ P G TRDG F Sbjct: 61 RLPSGLQIGTGVRPVATERIHSQGNLSETNNSHNVAIRGKGFFQVQLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G L +A+G I IP + G +S K + + L Sbjct: 121 QEDQNGQLTTANGFL-----IFPTITIPDNATDLTISSDGIVSVKVQGQSVPQQVGQFTL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN + + P+E+ G+ ++ ++E SN N E+ MI Sbjct: 176 TTFINDSGLESIGENLYVETSSSGVPIENTPGINGAGLLQHKYVETSNVNIAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 236 TQRAYEVNSKAVSTSDQMLQKLTQ 259 >gi|312794500|ref|YP_004027423.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876698|ref|ZP_07736678.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796538|gb|EFR12887.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|312181640|gb|ADQ41810.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 255 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 21/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----------EVVGAIK 49 M + + ++ + A+N++N T GF+ + + V + Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-----GIILTRDG 104 N I + G +I T L+ A+ G+ +FA+E P I+ TR+G Sbjct: 61 NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAIEVPGSQGAQQILYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + G LV+ G Y VL I + Q + E+G I Q G+ + + + Sbjct: 121 AFTLNSRGELVTLDGFY-VLGQNGR-IVL-QNGGQVRIDEQGNIYQDGRFVDRLRIVDFQ 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 Q + N+ + + + +G+LE SN NS+ EM MI + + + + Sbjct: 178 DKQLLRKLGNNLFEADAGAQQIP--FSGRILQGYLEGSNVNSVQEMVDMISVLRAYEANQ 235 Query: 225 TLIDENEKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 236 KAFTIQDETLQKAVNEIA 253 >gi|89075497|ref|ZP_01161908.1| putative polar flagellar FlgG [Photobacterium sp. SKA34] gi|89048769|gb|EAR54340.1| putative polar flagellar FlgG [Photobacterium sp. SKA34] Length = 262 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 112/265 (42%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVGF+ + F ++ N + + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T +D +EGD +F + P G I TR+G+F Sbjct: 61 TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G LV++ YPV I +P+ VG GE+S Q+ +V+ + Sbjct: 121 TINSEGQLVTSGSGYPVQPE----IVVPEDAVGITVGTDGEVSARIRGEQENQVLGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E G+ ++++ LE SN N E+ MI Sbjct: 177 VDFINPGGMEPIGQNLFLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 237 AQRVYEMNSKVISTVDQ-MLSYVNQ 260 >gi|329297209|ref|ZP_08254545.1| Flagellar basal-body rod protein flgG [Plautia stali symbiont] Length = 260 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRSRAVFEDLMYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T + A+ G +F ++ P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVTTERLHNQGNLSQTSNSKNVAINGQGYFQVQMPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 +V +G LV+ +G +PV I IP + G ++Q+G+ + + L Sbjct: 121 QVDQNGQLVTNAG-FPVQPG----ITIPANATSITIARDGVVTVTQQGQTQPAQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E TP ++ +G+ + + ++E SN N E+ MI Sbjct: 176 STFMNDAGLDSVGENLYQETQASGAPTESTPGQNGAGL-LYQSYVETSNVNVAEELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEINSKAISTSDQMLQKLTQ 259 >gi|257457574|ref|ZP_05622741.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] gi|257444960|gb|EEV20036.1| flagellar basal-body rod protein FlgG [Treponema vincentii ATCC 35580] Length = 264 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 98/266 (36%), Gaps = 34/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + + TVA+N++N +T GF+ + +F +++ + Sbjct: 1 MVRSLWTAATGMNSQQANIDTVANNLANVNTSGFKKQRAEFEDLLYQTIRAAGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + E GS TG D A+ G+ +F + G TRDG F Sbjct: 61 ITPVGVEMGHGAKLAATQRNFEQGSLQQTGVSTDVAIAGEGFFRVLQYDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKD--EIFNVGEKGEISQ------KGKVIATM 158 K+ D LV+++G + I P+ + + G +S + + Sbjct: 121 KIDADRQLVTSNGLRCL-----PEIIFPENYLPHTIAISQDGRVSVRVGEQDDPVEVGQI 175 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY G + ++ I P + G T + FLE SN +++ EM Sbjct: 176 ELYRFQNPVGLSAQGSNLFRQTPASGQAIAGRPGFNGFGKT-EHKFLEMSNVSTVSEMVN 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + + I ++ + A+ Sbjct: 235 MIVAQRAYEFNSKAIQTSDNMLGTAV 260 >gi|85710166|ref|ZP_01041231.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] gi|85688876|gb|EAQ28880.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] Length = 263 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 31/265 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------- 55 ++ ++ A + R+ +A+N++N T GF+ + +F+ + Q+ Sbjct: 4 SALHVARTGLEAQDARMRVIANNLANIGTTGFKRDRAEFATLAYQEMRVAGQQSTQQTAF 63 Query: 56 ------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + V + G+ TG LD AL+G +F +E P G I TR G F Sbjct: 64 ATGLNLGTGVQVTGTSRIEAQGTLNQTGNSLDLALDGPGFFQVELPGGGDIAYTRAGNFT 123 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VIATMGLY 161 ++ +G LV+ G + PIQ+PQ + + G +S Q G+ I + + Sbjct: 124 LSPEGQLVTTQGY-----ALTPPIQVPQGAQNITIAPDGTVSAVQPGQTAPIQIGQLQVA 178 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQMIHL 216 S G ++ + P++ +++G LE SN N + E+ +MI Sbjct: 179 SFVNPAGLRAIGDNFLVETAASGPVDAGLAGQFGRGNIRQGMLETSNVNVVEELVEMIEA 238 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ++ + A + + Sbjct: 239 QRAYEINSKMVSSVDEMLRNANQTL 263 >gi|224534580|ref|ZP_03675156.1| flagellar basal-body rod protein FlgG [Borrelia spielmanii A14S] gi|224514257|gb|EEF84575.1| flagellar basal-body rod protein FlgG [Borrelia spielmanii A14S] Length = 265 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ +N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDIAIEGDGFYKILLPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV++ G Y VL I P++ + E+G +S + + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----IFFPEEYIQNSITISEQGIVSVKIDNSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G +++G LE SN + EM Sbjct: 176 EISRFVNPAGLNAIGSNLFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|224532954|ref|ZP_03673563.1| flagellar hook-basal body complex protein [Borrelia burgdorferi WI91-23] gi|224512118|gb|EEF82510.1| flagellar hook-basal body complex protein [Borrelia burgdorferi WI91-23] Length = 282 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 113/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L TV++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPIVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G++ Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQVFHNSNFESDPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ Sbjct: 177 VSEYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDISLRPKIETET 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|222824019|ref|YP_002575593.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] gi|222539241|gb|ACM64342.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] Length = 264 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + ++ + ++ ++N+SN +TVG++ + +F++++ S Sbjct: 1 MLRSLYTAASGMVSQQTQIDVTSNNISNVNTVGYKKSRAEFADLMYQTMKYAGTSTSSTT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEG-DAWFALESPRGI-ILTRDG 104 V G + GS T T LD A+ G + +F ++ P G TR+G Sbjct: 61 KHPSGIEVGLGSRVTAISKIFSEGSLKQTSTAGLDMAIAGNNGFFQIQMPDGTIAYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGK----VIATM 158 +F +G++V++ G Y +L + IP+ NV G IS Q G I + Sbjct: 121 QFTKDAEGNIVNSDG-YRLLPE----MTIPEDATAINVASDGTISVMQPGNTAETQIGQI 175 Query: 159 GLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQM 213 L + G ++ + + P+ ++G +K GF+E SN + EM + Sbjct: 176 ELVNFINPAGLHALGDNLLVETDASGAPIAGIAGENGFSPIKHGFVELSNVQLVEEMTDL 235 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + + I ++ ML + + Sbjct: 236 ITGQRAYEAGSKAITTSDD-MLGIVNQL 262 >gi|138896905|ref|YP_001127358.1| flagellar basal-body rod protein [Geobacillus thermodenitrificans NG80-2] gi|134268418|gb|ABO68613.1| Flagellar basal-body rod protein [Geobacillus thermodenitrificans NG80-2] Length = 345 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 37/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVG----------- 46 M + LA ++R+ + +N++N +T G++ F E++ Sbjct: 70 MLRGLYTAASGMLAQQRRVDWLTNNLANAETPGYKADAGAMRAFPELLMNRLEDESIPSA 129 Query: 47 -----AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDA 88 + I + V + + + G TG D AL G Sbjct: 130 PPRAVPTQTAIGLLNTGVYTQELIPNFRQGDIKETGLSTDVALVDGQVPVDPTTGERGTL 189 Query: 89 WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +FA+E+ +G TR+G F ++ D L + G Y VLD I IP E F V + G Sbjct: 190 FFAVENDQGETRYTRNGHFTLSPDDYLTTQDGWY-VLDGNGERIAIP--SESFTVRDDGT 246 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANS 206 I+ + + IA +G+ + V+ N P P + VK+GF+E SN + Sbjct: 247 ITAENRTIARLGVVFAANPKTVVKEGNGLFRSTDGPLPQAPGNVTYMVKQGFIERSNVDI 306 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + +I ++S+ +A+ + Sbjct: 307 ERTMTDLLAAYRAFEANQKIIQAYDRSLDKAVNEVG 342 >gi|195941596|ref|ZP_03086978.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi 80a] gi|216264480|ref|ZP_03436472.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 156a] gi|226320635|ref|ZP_03796194.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 29805] gi|215980953|gb|EEC21760.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 156a] gi|226233958|gb|EEH32680.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 29805] gi|312148084|gb|ADQ30743.1| flagellar hook-basal body complex protein [Borrelia burgdorferi JD1] gi|312149492|gb|ADQ29563.1| flagellar hook-basal body complex protein [Borrelia burgdorferi N40] Length = 282 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 113/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L TV++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G++ Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQVFHNSNFESDPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ Sbjct: 177 VSEYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDISLRPKIETET 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|260774940|ref|ZP_05883841.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] gi|260609195|gb|EEX35353.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] Length = 262 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVG++ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 V D+G +V++ YP+ I IP+ +G GE+S Q +V+ + Sbjct: 121 TVNDEGVVVTSGAGYPLEPE----IAIPEDAISITIGTDGEVSVRVRGQQDNQVVGQIAT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G +++ LE SN N E+ MI Sbjct: 177 VDFVNPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|153952075|ref|YP_001398357.1| flagellar basal body rod protein FlgG [Campylobacter jejuni subsp. doylei 269.97] gi|152939521|gb|ABS44262.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. doylei 269.97] Length = 263 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQMQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 V G + G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTKGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMG 159 F ++G++V++ G Y +L + IP+ NV G +S Q+ I + Sbjct: 121 FTKDNEGNIVNSDG-YRLLPE----MTIPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L G ++ + P+ ++G T++ GF+E SN + EM +I Sbjct: 176 LVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEEMTDLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML + + Sbjct: 236 TGQRAYEAGSKAITTSDD-MLGIVNQL 261 >gi|225551767|ref|ZP_03772710.1| flagellar hook-basal body complex protein [Borrelia sp. SV1] gi|225371562|gb|EEH00989.1| flagellar hook-basal body complex protein [Borrelia sp. SV1] Length = 282 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 112/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L TV++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEILIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPVVGKLGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G+I Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQIFHNSNFESDPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDLSGVTVKRGF 198 + +++ T+ + + + + ++ NS ++ ++ Sbjct: 177 VSEYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDVSLRPKIETET 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|225551864|ref|ZP_03772807.1| flagellar basal-body rod protein FlgG [Borrelia sp. SV1] gi|225371659|gb|EEH01086.1| flagellar basal-body rod protein FlgG [Borrelia sp. SV1] Length = 265 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTHNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV++ G Y VL I P++ + E+G +S + + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----IFFPEEYIQNSIAISEEGIVSVKIDNNNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G +++G LE SN + EM Sbjct: 176 EISRFVNPAGLSAIGSNLFKETAGSGQEIAGIPGSEGMG-RLRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|254511077|ref|ZP_05123144.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium KLH11] gi|221534788|gb|EEE37776.1| flagellar basal-body rod protein FlgF [Rhodobacteraceae bacterium KLH11] Length = 236 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 7/241 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + L+ Q L + VA+N++N +T G+R V FSE + + + + +S Sbjct: 1 MDSA-YVTLSRQSGLMNEMRMVANNIANANTTGYRQQGVVFSEFIRDMPD--NPSLSLTR 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S + G TG DFA+EGD +F +E+P G LTR G F +G LV+ G Sbjct: 58 AEVRNTSLQQGVLTETGGSFDFAIEGDGFFMVETPAGNRLTRAGSFSPNAEGDLVTMDG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + VL+ P+ +P +VG G +S +G+++ +G+Y+V Q VR + + P Sbjct: 117 HRVLNSNGAPVFVPPDAAAIDVGSDGTLSVEGQLLGQLGVYTVADPQNLVREGRTYLRPA 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P+++ V FLE SN N++ ++ +MI + + + + +D ++ + A++ Sbjct: 177 GQVDPVDEPVVVH---RFLEGSNVNAIGQVTRMIEIQRAYELGQSFLDAEDERVRGALKA 233 Query: 241 I 241 + Sbjct: 234 L 234 >gi|320354342|ref|YP_004195681.1| flagellar basal-body rod protein FlgG [Desulfobulbus propionicus DSM 2032] gi|320122844|gb|ADW18390.1| flagellar basal-body rod protein FlgG [Desulfobulbus propionicus DSM 2032] Length = 260 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 32/264 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S A + +A+N++N T GF+ + F +++ I S Sbjct: 1 MRSLWTSTTGMSAQNLNMDVIANNLANVSTTGFKKSRADFQDLLYQIMKVPGSPTSADTR 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 V G + T LD A+EG +F + P G I TR G K Sbjct: 61 SPTGIQVGLGVKPAAVTKVFTEGDIVQTENTLDVAIEGPGFFQVTLPDGNIAYTRAGNLK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLY 161 + +G L ++ G I IP+ + + G +S + + L Sbjct: 121 LDGEGRLTTSDGF-----PIEPEIVIPEDAREVTISQTGVVSAIVGDDTTSTELGNVDLV 175 Query: 162 SVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + RE + P + G T+ +G++E+SN N + EM MI Sbjct: 176 DFVNDAGLIAIGRNLFRETEASGAPLIGAPGTNGIG-TLLQGYVENSNVNLVEEMTHMIT 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + F + +I +++ M Sbjct: 235 TQRAFEINSNVITTSDEMMQTVTN 258 >gi|78067835|ref|YP_370604.1| flagellar basal body rod protein FlgG [Burkholderia sp. 383] gi|77968580|gb|ABB09960.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 262 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 105/269 (39%), Gaps = 33/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + ++ +++N++NT T GF+ + F +++ Sbjct: 1 MNRSLYIAATGMNAQQAQMDVISNNLANTSTNGFKASRAVFEDLLYQTIRQPGANSTQQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G TG D A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQQVATERLYTQGGLTQTGNSKDVAINGAGFFQVLMPDGTNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG Y VL I IPQ +G+ G ++ I ++ + Sbjct: 121 QTNAQGQLVTSSG-YQVLPA----ITIPQNATSLTIGKDGVVTVTQAGSTNSVQIGSLQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G R + S P + +G T+ + ++E SN N + E+ MI Sbjct: 176 ATFINPAGLEARGENLFSETTSSGAPNVSQPGLNGAG-TLSQNYVESSNVNVVQELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + + +++ ML+ + + S Sbjct: 235 QTQRAYEINSKAVTTSDQ-MLQTVTQMKS 262 >gi|224825166|ref|ZP_03698272.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] gi|224602837|gb|EEG09014.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] Length = 260 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I + + +L V++N++N++T GF+ F ++ +++ Sbjct: 1 MMRALYIAKTGMDSSQFQLDVVSNNLANSNTKGFKKGHAVFEDLYYQTLRQPGSQLTNGN 60 Query: 58 ------FVASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V +G ++ G+ ST LD A+ GD +F ++ P G TR+G F Sbjct: 61 SLPTGLQVGTGSTVVATARIHSQGNLESTEQPLDLAINGDGFFRVQQPDGTIAYTRNGEF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + ++G +V++SG +LD A I IP + E G + S T+ L Sbjct: 121 RRNENGDIVNSSGY--LLDPA---INIPANATGITISEAGVVQYTQPNSTAPTTAGTIQL 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + QG N + P + +V+ GFLEDSN N E+ MI Sbjct: 176 TTFINPQGLQSIGQNLYLQTQASGDPQDGDPNTDGRGSVRSGFLEDSNVNVTEELVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + F + I ++ + + Sbjct: 236 AQRSFEMNSRAIKTADEMLQRIAQ 259 >gi|259908810|ref|YP_002649166.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96] gi|224964432|emb|CAX55941.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96] gi|283478792|emb|CAY74708.1| Flagellar basal-body rod protein flgG [Erwinia pyrifoliae DSM 12163] gi|310767292|gb|ADP12242.1| Flagellar basal-body rod protein [Erwinia sp. Ejp617] Length = 260 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDGQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTLRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T + D A+ G +F+++ P G TRDG F Sbjct: 61 TLPSGLQIGTGTRPVATERLHNQGNLSQTDSSKDVAINGQGFFSVQLPDGTAAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 + +G LV+++G +PV I IP + G +S + + + L Sbjct: 121 QTDQNGQLVTSAG-FPVQPA----IVIPANSLSMTISRDGVVSVTQQGQANPVQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E P + +G T+ +G++E SN N E+ MI Sbjct: 176 STFMNDAGLSSMGENLYQETQASGAPNESNPGNNGAG-TLYQGYVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEINSKAISTSDQMLAKLTQ 259 >gi|120554035|ref|YP_958386.1| flagellar basal body rod protein FlgG [Marinobacter aquaeolei VT8] gi|120323884|gb|ABM18199.1| flagellar basal-body rod protein FlgG [Marinobacter aquaeolei VT8] Length = 262 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 30/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + +ST+++N++N +T GF+ K F +++ I Sbjct: 1 MNPALWVSKTGLSAQDINMSTISNNLANVNTTGFKRDKAVFQDLLYQINRQPGGLSTQNS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G+ T LD A+ G + + P G I TRDG+F Sbjct: 61 ELPSGLQLGTGVRVVGTVKQFSQGNLQITEQPLDMAINGRGFLQILLPDGQIAYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G +V+ G I +P +G G ++ + + L Sbjct: 121 QLNVNGDVVNPDGYLL-----EPAINVPNNATNITIGTDGTVTAITDDQAAPVNVGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 QG N+ I P+E +G+ T+++G LE SN + E+ MI Sbjct: 176 VDFINPQGLQAIGNNLFKETISSGNPIEGQAGLLGLGTIEQGSLEASNVEVVEELVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + ++ ++ + NI Sbjct: 236 TQRAYEMNSKVVSTADQMLQFITNNIG 262 >gi|90579911|ref|ZP_01235719.1| putative polar flagellar FlgG [Vibrio angustum S14] gi|90438796|gb|EAS63979.1| putative polar flagellar FlgG [Vibrio angustum S14] Length = 262 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 111/265 (41%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVGF+ + F ++ N + + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQSTQDT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T +D +EGD +F + P G I TR+G+F Sbjct: 61 TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQVLLPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G LV++ YPV I +P VG GE+S Q+ +V+ + Sbjct: 121 TINSEGQLVTSGSGYPVQPE----IVVPDDAVGITVGTDGEVSARIRGEQENQVLGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E G+ ++++ LE SN N E+ MI Sbjct: 177 VDFINPGGMEPIGQNLFLPTGASGDPQEGTPGLEGYGSIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 237 AQRVYEMNSKVISTVDQ-MLSYVNQ 260 >gi|119953550|ref|YP_945760.1| flagellar basal-body rod protein FlgF [Borrelia turicatae 91E135] gi|119862321|gb|AAX18089.1| flagellar basal-body rod protein FlgF [Borrelia turicatae 91E135] Length = 286 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 58/282 (20%), Positives = 112/282 (39%), Gaps = 46/282 (16%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND-------- 51 + +A RL +A+N++N D G++ + F E++ ND Sbjct: 7 RGIYTAASGMMAQRHRLDVIANNLANIDLTGYKKDLSVQKAFPEMLIRRINDDGLYKFPK 66 Query: 52 --------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRD 103 I + + V + Y S E G TG LD AL + +F +++P G TR+ Sbjct: 67 GYLETAPVIGKLGTGVEENEIYTSFEQGPLKITGNPLDLALTDEGFFVVQTPEGERYTRN 126 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------------- 149 G F + +G L++ G YPV+ I KD F + +G+I Sbjct: 127 GSFILGAEGILMTKDG-YPVIGEKGY---IYLKDNNFKITAQGQIFHNSTFERNPKKLVS 182 Query: 150 ------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED---LSGVTVKRGFLE 200 + +++ + + + + ++ ++ +S + + S ++ G LE Sbjct: 183 EYENSWENYELLDNLKIVNFEKTRFLQKQGSSLWNSTEISGQARNIEINSRPKIETGTLE 242 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 SN N++ EM MI + + + + I + + + I I Sbjct: 243 GSNVNAINEMVSMITVNRAYEANQKTIQTEDSLLGKLINEIG 284 >gi|197120123|ref|YP_002140550.1| flagellar basal body rod protein FlgG [Geobacter bemidjiensis Bem] gi|197089483|gb|ACH40754.1| flagellar basal body rod protein FlgG [Geobacter bemidjiensis Bem] Length = 262 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 32/264 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + VA+N++N T GF+ + F +++ + + Sbjct: 1 MIRALWTAASGMQAQQLNIDVVANNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNAT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G G+ I+TG ELD A++GD + ++ G TR G F Sbjct: 61 TIPTGIQVGLGVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQSDGSTAYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 K G +V++ G+ PV+ + IP VG G +S + + T+ L Sbjct: 121 KRDGQGRVVTSDGQ-PVIPE----VLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + P T ++ G T+++GFLE+SN + M EM MI Sbjct: 176 ASFSNPAGLNAIGKNLFLPTDSSGAATTGTAGQNGLG-TIEQGFLENSNVSIMEEMVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 + + + I +++ + +A Sbjct: 235 VGQRAYEINSKAIQASDEMLQQAA 258 >gi|254474364|ref|ZP_05087750.1| flagellar basal-body rod protein FlgF [Ruegeria sp. R11] gi|214028607|gb|EEB69442.1| flagellar basal-body rod protein FlgF [Ruegeria sp. R11] Length = 239 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 6/236 (2%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 L+ Q L + + VA+N++N T G+R+ + FSE + + + +S + Sbjct: 6 YTTLSRQSGLMREMRVVANNIANAATTGYRSEGLIFSEFIQSAPGQ--ESLSMARANIRN 63 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 S G TG +LD ALEGD +F +E+P G LTR G F G LV+ G Y VLD Sbjct: 64 TSLAQGQLTQTGGDLDLALEGDGYFMVETPMGERLTRSGTFSTNAAGDLVTMDG-YRVLD 122 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP 185 P+ +P + G G +S G+ + +G++ + + VR + + Sbjct: 123 AGRAPMFVPGDAKSVKFGADGTLSVDGRALGQIGIFKPEQTHQMVREDGVMFRVDGE--- 179 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +E V +GFLE SN N++ E+ +M+ + + + + ++ ++ + +AI+ + Sbjct: 180 VEAAFETRVLQGFLEGSNVNAISEVARMVEIQRAYEMGQSFLETEDQRVRDAIKKL 235 >gi|83589649|ref|YP_429658.1| hypothetical protein Moth_0797 [Moorella thermoacetica ATCC 39073] gi|83572563|gb|ABC19115.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 253 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 20/257 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKN-----DI 52 M + L E R +++N++N T GF++ F E++ I Sbjct: 1 MLRGLYLASTGMLVQEMRQDVISNNLANATTGGFKSAVATVRSFPEMLLQRLEKNQAIPI 60 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRF 106 V Y + E G TG D AL +F + +P G TR+G+F Sbjct: 61 GPFSPGVMVDNIYTNTEPGPLTETGHATDLALVQPGVGVSPAFFVVRTPGGEAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 +V G LV+A G YPV I F V G I G+V+ + + + Sbjct: 121 QVDPGGWLVTAEG-YPVQGQNGD---IYVGTTDFKVDAGGRILVNGQVVDQLRVVTFANP 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 R+ ++ P + VK+G+LE+SN + E+ M+ + + + + + Sbjct: 177 ALLQRQGDTLF--TAPGAQALPAANFQVKQGWLEESNVDLARELVDMLAVLRSYEANQKV 234 Query: 227 IDENEKSMLEAIRNIAS 243 I ++++ +++ + S Sbjct: 235 IQTEDQTLAKSVNEVGS 251 >gi|262404538|ref|ZP_06081093.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC586] gi|262349570|gb|EEY98708.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC586] Length = 262 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 113/265 (42%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ + + A + ++T+++N++N T+GF+ + F ++ N + S Sbjct: 1 MQPALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 RLPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G++V++ Y + I IP+ +G GE+S Q +V+ + Sbjct: 121 TLDDEGAIVTSGSGYRLQPE----IVIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ V++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I +K ML + Sbjct: 237 AQRVYEMNSKVISAVDK-MLSFVNQ 260 >gi|161349955|ref|YP_733400.2| flagellar basal body rod protein FlgF [Shewanella sp. MR-4] gi|161367434|ref|YP_737389.2| flagellar basal body rod protein FlgF [Shewanella sp. MR-7] Length = 247 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPSRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 VETPSANFRAGPIKTTGRDLDVAIKGDGWFAVQAKDGSEAYTRSGSLSFDSTGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P E + + G IS + + + + L + +Q + Sbjct: 119 N-PVMGDAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVIEEVGRLKLVNPGNAQ--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + P V V+ G +E SN N + EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLVSGDPAPADPNVFVESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|121607559|ref|YP_995366.1| flagellar basal-body rod protein FlgG [Verminephrobacter eiseniae EF01-2] gi|121552199|gb|ABM56348.1| flagellar basal-body rod protein FlgG [Verminephrobacter eiseniae EF01-2] Length = 260 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +L +A N++N T G++ F +++ + + Sbjct: 1 MIDALWIAKTGMSAQQTQLDVIAHNLANVSTTGYKRSNAMFEDLIYQNLRQVGANSTEQN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + GS + LD A+ G+ +F + P G + TRDG F Sbjct: 61 QLPTGLQLGLGVRTVATSRCFVQGSLQESRNNLDVAINGNGFFQVMLPDGSLGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 +V G LV+A+G PV + I I ++ +G + S + + + + + Sbjct: 121 QVDAQGRLVTANG-LPVANG----ITIAANAISVSISAEGAVSAIMPGSVQPQPLGNLAM 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + +E++ P + GV +K+GFLE SN N + E+ MI Sbjct: 176 ASFINPAGLEPIGQNLFKESAASGQPQQGIPGSNGLGV-IKQGFLEASNINIVEELVTMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I +++ + + Sbjct: 235 QTQRAYEMNSKAIQTSDQMLAKL 257 >gi|83647171|ref|YP_435606.1| flagellar basal body rod protein FlgG [Hahella chejuensis KCTC 2396] gi|83635214|gb|ABC31181.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 261 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L T+++N++N +T GF+ + F +++ IK Sbjct: 1 MHGALWVSKTGLAAQDTALKTISNNLANVNTTGFKRDRAVFQDLLYQIKRQPGGQSSQDT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V G+ T LD A+ G +F + P G I TRDG+F Sbjct: 61 QLPSGLQLGTGVRVVGTQKVFSEGNLEVTEQPLDIAINGRGFFQILMPDGTISYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+A+G +P+ I +P + G +S + + Sbjct: 121 HLNSDGDVVTANG-FPLEPG----ITVPDGALHLTISTDGVVSVTVAGTATPTQVGNINT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G N+ P E G+ TV++G +E SN + EM MI Sbjct: 176 VDFINPAGLEAIGNNLFRETAASGDPQEGTPGLAGLGTVEQGMVETSNVEIVEEMVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + ++ ++ + +N+ Sbjct: 236 TQRAYEMNAKVVTTADQMLQYITQNL 261 >gi|24374755|ref|NP_718798.1| flagellar basal body rod protein FlgG [Shewanella oneidensis MR-1] gi|24349419|gb|AAN56242.1|AE015761_12 flagellar basal-body rod protein FlgG [Shewanella oneidensis MR-1] Length = 262 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +++N++N TVG++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTTAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + PI IP+ V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVL----QPPITIPEDATSITVSAEGEVSVKTPGAAENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLAYVNQNL 262 >gi|153011524|ref|YP_001372738.1| flagellar basal body rod protein FlgG [Ochrobactrum anthropi ATCC 49188] gi|151563412|gb|ABS16909.1| flagellar basal-body rod protein FlgG [Ochrobactrum anthropi ATCC 49188] Length = 262 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +FS+++ + N +Q Sbjct: 1 MKALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFSDLLYQSERTAGVPNQANQS 60 Query: 56 I----SFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I + V G + + GSF TG D AL G WF ++SP G + R G F Sbjct: 61 IVPEGALVGLGVQTAAVRNLHMQGSFNQTGNPFDLALTGKGWFQIQSPTGETLYARAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 DG LV+ G PV I IP V + G++ K + + + L Sbjct: 121 NKNADGQLVTLDGN-PVEPA----ITIPPDAVEVTVTDTGQVFAKLQDQVNQVDLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + P + G ++K+G+LE SN + + E+ +I Sbjct: 176 ANFTNEAGLEPLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 235 TAQRAYEMNSKVIQAADEMAATVSKNL 261 >gi|260779345|ref|ZP_05888237.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] gi|260605509|gb|EEX31804.1| flagellar basal-body rod protein FlgG [Vibrio coralliilyticus ATCC BAA-450] Length = 261 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGALVDQVN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V G+ +T ELD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPAGVQLGSGVRVVGTQKVFTQGNTQNTSQELDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 V +G +V++ G IQIP+ +VG G +S + + + L Sbjct: 121 HVNSEGLMVNSQGL-----PLEPQIQIPENALSVSVGVDGTVSATTADSTAPQELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + RE ED G ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLFRETEASGQADELIAGEDGVG-SIKQGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 235 TTQRAYEMNAKVVSAADDML 254 >gi|54294165|ref|YP_126580.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Lens] gi|54297184|ref|YP_123553.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Paris] gi|148358808|ref|YP_001250015.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Corby] gi|296106853|ref|YP_003618553.1| flagellar basal-body rod protein FlgG [Legionella pneumophila 2300/99 Alcoy] gi|53750969|emb|CAH12380.1| flagellar biosynthesis protein FlgG [Legionella pneumophila str. Paris] gi|53753997|emb|CAH15468.1| flagellar biosynthesis protein FlgG [Legionella pneumophila str. Lens] gi|148280581|gb|ABQ54669.1| flagellar basal body rod protein FlgG [Legionella pneumophila str. Corby] gi|295648754|gb|ADG24601.1| flagellar basal-body rod protein FlgG [Legionella pneumophila 2300/99 Alcoy] gi|307609979|emb|CBW99508.1| flagellar biosynthesis protein FlgG [Legionella pneumophila 130b] Length = 261 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M+ + + + A ++ ++T+A+N++N +T F+ + F +++ GA + Sbjct: 1 MEPALWVSKSGLEAQDKNIATIANNLANVNTTAFKKGRALFEDLIYQNLRQAGAQSSQNS 60 Query: 54 QKISFVASGKEYL------SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + + G GS +T LD A+EG +F + P G TRDG F Sbjct: 61 QIPTGINMGTGVHLVATEKIFSQGSLQNTQNALDVAIEGRGFFTVLMPDGTQAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K G +V+++G YP+ I IP + +G G +S VI + L Sbjct: 121 KTDSTGQIVNSNG-YPLQPN----ITIPPQTTKITIGTDGTVSALVAGNNAPSVIGNIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G + + + TP+ D G T+ +G LE SN N + E+ MI Sbjct: 176 TDFINPAGLQPIGQNLYTETVASGTPITDNPGNSGLGTLLQGSLEASNVNVVEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + + + Sbjct: 236 AQRSYEITAKSIQTVDSMLQYLTQTL 261 >gi|119899025|ref|YP_934238.1| flagellar basal body rod protein FlgG [Azoarcus sp. BH72] gi|119671438|emb|CAL95351.1| flagellar basal-body rod protein FlgG [Azoarcus sp. BH72] Length = 260 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S A + L +++N++N T GF+ + F +++ GA Sbjct: 1 MIRSLWTARTGLDAQQTSLDVISNNLANVSTNGFKRQRAVFEDLLYQTMRQPGAQSTQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ TG LD A++G+ +F + P G TRDG F Sbjct: 61 QVGSGLQIGTGVRPVATERIFTQGNLQQTGGSLDIAIQGNGFFQIALPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ + G++V+ASG YP+ D I IP V + G +S I + L Sbjct: 121 QLDNQGNVVTASG-YPLADN----INIPADTLTVTVAKDGTVSVLQAGQTTPTQIGAIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + S G + E++ P P + +GV + +G++E SN N E+ MI Sbjct: 176 ATFINSGGLQSAGENLFLESASSGVATPNQPGTNGTGV-LNQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + + Sbjct: 235 VTQRAYEMNSRAIQTSDSMLGRLTQ 259 >gi|238916189|ref|YP_002929706.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] gi|238871549|gb|ACR71259.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] Length = 256 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 21/255 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEV---------VGAI 48 M + ++RL V++N++N T G++ + F +V VG I Sbjct: 1 MVKGLYTAYSGLTVQQKRLDVVSNNLANATTTGYKKEGLTTQSFKDVYGIKVKDETVGYI 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRD 103 +I G+ + S + GSF +TG DFAL G F++ + TRD Sbjct: 61 NQNIGTLNLGAKVGESFRSWDQGSFQNTGNTFDFALSGSGLFSISFTNKAGETSTLYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F++ +G LV+ G + VL PIQ+P E V E GEI G+ + + L Sbjct: 121 GSFQMNREGYLVTKDGDF-VLGENG-PIQLPTDFESLTVEESGEIYADGQYVDRLALVDF 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + T E + V +G+LE SN N + EM MI + + F S Sbjct: 179 EDYDYVEAYGENLYKAVDGATQTE--ATAKVNQGYLEASNINVVTEMVDMISIARDFESN 236 Query: 224 TTLIDENEKSMLEAI 238 +++ ++ + + + Sbjct: 237 QKIMNTIDEMLGKMV 251 >gi|225548842|ref|ZP_03769819.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 94a] gi|225370445|gb|EEG99881.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 94a] Length = 282 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 113/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L TV++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G+I Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQIFHNSNFESDPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ Sbjct: 177 VSEYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDISLRPKIETET 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNTVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|260767767|ref|ZP_05876702.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260617276|gb|EEX42460.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315179401|gb|ADT86315.1| flagellar basal body rod protein FlgG [Vibrio furnissii NCTC 11218] Length = 262 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ + + A + ++T+++N++N TVGF+ + F ++ N + S Sbjct: 1 MQPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTTNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G +V++ YP+ I IP VG GE+S Q +V+ + Sbjct: 121 TLNDEGVIVTSGSGYPLQPE----IVIPDDAISITVGNDGEVSVRVRGQQDNQVLGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ V++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGNVRQSMLESSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|212640499|ref|YP_002317019.1| flagellar basal body rod protein [Anoxybacillus flavithermus WK1] gi|212561979|gb|ACJ35034.1| Flagellar basal body rod protein [Anoxybacillus flavithermus WK1] Length = 262 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 29/265 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + L+ ++R+ + +N++N +T G++ + F E++ Sbjct: 1 MFRGLYTAASGMLSQQRRIEMMTNNIANANTPGYKADQASLRAFPEMLMHRIQQTTIPTE 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFAL---EGDAWFALESPRGI 98 I + V + + G TG D A+ G ++F +++ G Sbjct: 61 KKLTWRDRTYIGPLSTGVYVQELVPNFAQGDIRETGNNTDMAIVDGTGTSFFTVQNETGE 120 Query: 99 -ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 TR+G F + DG L + G Y VLD IQ+ DE F V E G I++ G IA Sbjct: 121 VRYTRNGHFTIDADGFLTTTDGLY-VLDETGNRIQV--GDEQFTVLEDGTITKNGGQIAR 177 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + + + Q ++ N P E T+++ +E SN + M M+ Sbjct: 178 LRIAYAENVQTLMKEGNGLFRAEQQLPPAE---TYTIRQQHIERSNVDLSRTMTDMLSAY 234 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 + F + ++ +KSM +A I Sbjct: 235 RAFEANQKILQAYDKSMDKAANEIG 259 >gi|146295640|ref|YP_001179411.1| flagellar basal body rod protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409216|gb|ABP66220.1| flagellar basal body rod protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 257 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 107/260 (41%), Gaps = 23/260 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV-----GAIKNDI 52 M + + ++ + A+N++N T GF+ + F ++ N I Sbjct: 1 MIRGIYTSASGMILNQKLMDLTANNIANVSTTGFKRDIAQVESFRRMMTHKIYDDSSNSI 60 Query: 53 DQKISFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPR------GIILTR 102 D I +++ G + G +I T L+ A+ G +FA+E + TR Sbjct: 61 DNAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIRGSGFFAVEKVDPQTGQAQVYYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 +G F + +G LV+ G + VL I + Q + E+G I Q G+ + + L Sbjct: 121 NGAFTLNSNGELVTLEG-FRVLGQNGR-IVL-QNQGQIRIDEQGNIYQDGRFVDRLRLVD 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + N+ + + V +G+LE SN NS+ EM MI++ + + + Sbjct: 178 FQDKTLLRKIGNNLFEADAQSQQIA--FSGRVLQGYLEGSNVNSVQEMVNMINVLRAYEA 235 Query: 223 ITTLIDENEKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 236 NQKAFIAQDETLQKAVNEIA 255 >gi|38570330|gb|AAR24613.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni] Length = 263 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 116/267 (43%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKESRAEFADLMYQVMKYAGTSTSATT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGR 105 V G + G+ ST T+ LD A+ G+ +F ++ P G I TR+G+ Sbjct: 61 LSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMG 159 F ++G++V++ G Y +L + IP+ NV G +S Q+ I + Sbjct: 121 FTKDNEGNIVNSDG-YRLLPE----MTIPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L G ++ + P+ ++G T++ GF+E SN + EM +I Sbjct: 176 LVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEEMTDLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML + + Sbjct: 236 TGQRAYEAGSKAITTSDD-MLGIVNQL 261 >gi|313894945|ref|ZP_07828504.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976398|gb|EFR41854.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 109/266 (40%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDID---- 53 M I + + + +A+N++N GF+ + +F ++ ND Sbjct: 1 MWRGLYIAASGMITETKHTDMIANNLANASNTGFKRDDMAIREFEPMLLRRINDYTADTD 60 Query: 54 -------------QKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPR 96 ++ + G G+ +TG DFA+ G+ +F +++P+ Sbjct: 61 VTSFKGFRLGHGAPRVGMLGLGSAVDEIATDHLQGALQTTGNTYDFAISGEGYFVIDTPQ 120 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G TRDG F + +G L + G+ VL PI IP NV G I IA Sbjct: 121 GPRYTRDGSFYRSANGQLQNVRGQ-AVLSAQGRPINIPADATRVNVSGDGRIYVGNTEIA 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G D +++ ++ P P + T+++G LE SN + + EM ++I+ Sbjct: 180 QLGFVQFDAPDAVIKQGDNLYRPQEGARPTQATG--TIEQGLLEMSNTSIVTEMVELINN 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + + + + +A+ ++ Sbjct: 238 YRVYEAGSRAVQTQDSLLDKAVNDVG 263 >gi|218249387|ref|YP_002375274.1| flagellar hook-basal body complex protein [Borrelia burgdorferi ZS7] gi|221217927|ref|ZP_03589394.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 72a] gi|224533400|ref|ZP_03673994.1| flagellar hook-basal body complex protein [Borrelia burgdorferi CA-11.2a] gi|225549985|ref|ZP_03770946.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 118a] gi|218164575|gb|ACK74636.1| flagellar hook-basal body complex protein [Borrelia burgdorferi ZS7] gi|221192233|gb|EEE18453.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 72a] gi|224513565|gb|EEF83922.1| flagellar hook-basal body complex protein [Borrelia burgdorferi CA-11.2a] gi|225369444|gb|EEG98896.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 118a] Length = 282 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 113/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L TV++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G++ Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITHQGQVFHNSNFESDPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ Sbjct: 177 VSEYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDISLRPKIETET 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|219685570|ref|ZP_03540386.1| flagellar basal-body rod protein FlgG [Borrelia garinii Far04] gi|219672848|gb|EED29871.1| flagellar basal-body rod protein FlgG [Borrelia garinii Far04] Length = 265 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ +N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPNGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV++ G Y VL I P++ + E+G +S + + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----IFFPEEYIQNSITISEQGIVSVKIDNSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G+ +++G LE SN + EM Sbjct: 176 EISRFVNPAGLSAIGSNLFKETAGSGQEITGIPGSEGMGI-LRQGILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|315185553|gb|EFU19322.1| fagellar hook-basal body protein [Spirochaeta thermophila DSM 6578] Length = 269 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 104/269 (38%), Gaps = 44/269 (16%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND---------------ID 53 + R+ +A+N++N D G++ F E++ ND + Sbjct: 1 MASQLNRMDAIANNLANVDLTGYKRDTAIFKAFPELLIRRMNDKYFKVPWGSIDNTPVVG 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + + V + + Y E G T FALEG +F + +P+G TR+G F + +G Sbjct: 61 KLGTGVETNEVYTVFEQGPLKETKDPFHFALEGQGFFTVLTPQGERYTRNGSFILGPEGL 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV------------------- 154 LV+ G YPV+ + I K F V E G I Q + Sbjct: 121 LVTKEG-YPVVGENGL---IHIKANNFVVDEDGRIFQNARFAEDPDRLVALEENEWDETE 176 Query: 155 -IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE--DLSGVTVKRGFLEDSNANSMYEMG 211 + + + +V + ++ +S E V++GFLE SN N + EM Sbjct: 177 LVDRLKIVNVRRPRYLQKQGDSLWRTTRESGEAEILQDGRPKVRQGFLEGSNVNPVTEMV 236 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRN 240 QMI + + + + I+ + + I Sbjct: 237 QMIEVNRAYEANQKTIETQDSLLGRLINE 265 >gi|237653581|ref|YP_002889895.1| flagellar basal body rod protein FlgG [Thauera sp. MZ1T] gi|237624828|gb|ACR01518.1| flagellar basal-body rod protein FlgG [Thauera sp. MZ1T] Length = 260 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S A + L +++N++N T GF+ + F +++ GA Sbjct: 1 MIRSLWTARTGLDAQQTSLDVISNNLANVSTNGFKRQRAIFEDLLYQTIRQPGAQSTQQT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G G+ TG LD A++G+ +F + P G TRDG F Sbjct: 61 QISSGLQIGTGVKPVATERIFTQGTLQQTGGSLDVAVQGNGFFQVAMPDGTTAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGL 160 ++ G++V+ASG Y + D I IP +G+ G +S Q G+ I + L Sbjct: 121 QLDSQGNVVTASG-YTLADN----INIPADALSITIGKDGTVSVLQAGQTAPVEIGAIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNI------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + S G + P P + +GV + +G++E SN N E+ MI Sbjct: 176 ATFINSGGLQAAGENLFYETASSGVATPTQPGTNGAGV-LNQGYVEVSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 235 VTQRAYELNSRAISTSDQMLGRLTQ 259 >gi|220903670|ref|YP_002478982.1| hypothetical protein Ddes_0391 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867969|gb|ACL48304.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 265 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 21/262 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 MQ GL A L E R++ +A+N++N +T G++ V F + + D Sbjct: 1 MQAGMFSGLFAALTTEHRMNFIANNLANANTRGYKRDTVAFKDTMVTYAFDEIREPLMNL 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRD 103 S V + GS +G LD A+ G +A+F + +P G LTR+ Sbjct: 61 KSKPLFPEPLNASRVRLAVSKIDFAQGSMQYSGNPLDMAINGENAFFRVATPTGDFLTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F ++++G++++ G YP+ I IPQ V G++ V+ + L SV Sbjct: 121 GAFVLSENGTIMTPQG-YPLQAQGGGNIVIPQGTRHIQVSGDGQVIADNDVLGQIALVSV 179 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D Q + N+ P E + G +++GF E +N + EM MI + ++F Sbjct: 180 DNPQNLEKMGNNLYRPRENVQVAEGNAYLEGGRIEQGFTEAANVEVVPEMVNMIEVQRQF 239 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 + ++ ++ A + Sbjct: 240 EAYQKVMQTSDTLDRAATEKVG 261 >gi|88799023|ref|ZP_01114604.1| Flagellar basal body rod protein [Reinekea sp. MED297] gi|88778250|gb|EAR09444.1| Flagellar basal body rod protein [Reinekea sp. MED297] Length = 261 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 106/266 (39%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + +G A + LST+++N++N T G++ + F +++ ++ Sbjct: 1 MHKALWVGKTGLEAQDIALSTISNNLANAATTGYKKERAVFEDLIYQVQRQPGAQSSQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V + G T LD A+ G +F + P G I TRDG F Sbjct: 61 QLPSGLQLGTGVRTVGTQKQFVQGDLNMTEQPLDMAINGRGFFQVLMPDGNIAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + +G++V+A+G + IQ+P++ + VG G ++ I + + Sbjct: 121 HLDAEGNVVTANGYFL-----EPNIQVPEQTKTITVGTDGIVTAVSAGDNDPVEIGNIDI 175 Query: 161 YSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G N+ + P E + + ++ +G LE+SN + EM MI Sbjct: 176 VDFVNPAGLQAIGNNLFLETAASGAPAEGVPSLDGFGSIIQGALENSNVTIVEEMVDMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + ++ + N+ Sbjct: 236 TQRAYEMNSKAVSTADQMLGFITSNL 261 >gi|332296516|ref|YP_004438439.1| flagellar basal-body rod protein FlgG [Thermodesulfobium narugense DSM 14796] gi|332179619|gb|AEE15308.1| flagellar basal-body rod protein FlgG [Thermodesulfobium narugense DSM 14796] Length = 262 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 101/263 (38%), Gaps = 31/263 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----------AIKND 51 + + ++ + + +N++N +T GF+T + +F +++ A N Sbjct: 1 MRALWTAASGMISQTTNVDVITNNLANVNTTGFKTARAEFEDLMYQEVRPAGATSASGNM 60 Query: 52 IDQKISFVASGKEYLS---KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 + + + + G TG +LD A++GD +F + P G TR G F Sbjct: 61 LPTGLEIGLGSRPVATVRIFTEGPLQQTGNQLDLAIQGDGFFQVTLPDGSTAYTRAGNFS 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLYS 162 + G +V+ G I +P +VG+ G +S Q G V + T+ L Sbjct: 121 LDSAGEIVTPEGYLL-----QPSIVVPTNAVSISVGKDGSVSAKMQDGTVQDLGTIQLAR 175 Query: 163 VDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G ++ I TP G V++G LE SN + EM +I Sbjct: 176 FINPSGLTSLGSNLYQSTPASGDAILGTPGTQGIG-WVEQGMLEMSNVQVVEEMVNLITA 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + S + ++ + +A Sbjct: 235 ERAYESCAKGMTVCDQMLSDANN 257 >gi|74101660|gb|AAZ99750.1| FlgGL [Aeromonas hydrophila] Length = 275 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 108/260 (41%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + +++++++N++N +TVGF+ +V F ++ ++ Sbjct: 15 MHAALWVSKTGLSAQDAKMASISNNLANVNTVGFKRDRVAFEDLFYQVQRQPGAQQDQQN 74 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G F +T ELD A+ G +F +E P G TR+G++ Sbjct: 75 LSPIGIQMGNGVRVVGTQKVFTPGQFQNTNQELDMAVVGAGFFGVERPDGETAYTRNGQW 134 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +G LV++ G P+L IQIP ++G G +S Q+ + + L Sbjct: 135 HRNAEGLLVNSDG-LPMLPQ----IQIPDNATKVSIGTDGTVSATLPGQQENVELGRITL 189 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + R I P E+ G +K+ LE SN N + EM MI Sbjct: 190 TNFTNPAGLEALGGNLYRATGASGEAIEGVPGEEAMGA-IKQFTLESSNVNVVEEMVDMI 248 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ ++ + Sbjct: 249 TTQRAYEMNAKVVSAADQML 268 >gi|94263288|ref|ZP_01287104.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94267693|ref|ZP_01290962.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94272297|ref|ZP_01292100.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93450173|gb|EAT01484.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451895|gb|EAT02626.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456371|gb|EAT06495.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 243 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 6/235 (2%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ L E+RL VA+N++N DT G++ F E++ + D + Sbjct: 12 GIETMLGQERRLDQVANNLANVDTAGYKRQNTAFWEMLYNVTADRQRIGKG---SHTLTD 68 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 + G+ T LD A+ G+ +F +++ +G+ TR G F++ G L +G + D Sbjct: 69 HQQGNVQQTDNPLDLAINGEGFFRIQTDQGVRYTRAGNFELDPLGQLRMPNGGLVLGD-- 126 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 P+ I + + +G+I Q +I + + +V+ + + + Sbjct: 127 GGPVVIDEAGGEVAIDPQGQIHQNQVMIGQLDIVTVNDLTTLAKEGENLFRLEDDGEEMA 186 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 L V++G++E SN NS+ EM MI L + + + +I ++ AI + Sbjct: 187 AL-DFQVRQGYVEKSNVNSIEEMTAMIDLYRNYEAQQKMIQGIDEMDDLAISRVG 240 >gi|317050615|ref|YP_004111731.1| flagellar basal-body rod protein FlgG [Desulfurispirillum indicum S5] gi|316945699|gb|ADU65175.1| flagellar basal-body rod protein FlgG [Desulfurispirillum indicum S5] Length = 262 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 103/265 (38%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + +A + + +++N++N +T GF+ +V+F +++ + Sbjct: 1 MIRALWTASTGMMAQQTHIDNISNNLANVNTGGFKKSRVEFQDLMYQTIKPAGASTAAGI 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V GS I TG +LD +E D +F ++ P G TR+G F Sbjct: 61 TRPVGEQLGLGVKVAGITKMHTQGSIIQTGNQLDMTIEKDGYFQIQMPDGTTGYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++G +V+ G +L+ IQIP VG G +S + + + + Sbjct: 121 TKNNNGEIVTVEGF--LLEPG---IQIPDDAVEIYVGRDGTVSVQIGNQNQMQELGQITT 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E S P ED G + +GFLE SN + EM MI Sbjct: 176 AKFINPAGLESVGGNIFKETSASGAPQVGIPGEDSFGA-IAQGFLEQSNVQLVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ + A + Sbjct: 235 SAQRAYEINSKAITTGDEMLQTATQ 259 >gi|57167709|ref|ZP_00366849.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|305433215|ref|ZP_07402371.1| flagellar basal-body rod protein FlgG [Campylobacter coli JV20] gi|57020831|gb|EAL57495.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|304443916|gb|EFM36573.1| flagellar basal-body rod protein FlgG [Campylobacter coli JV20] Length = 263 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 113/268 (42%), Gaps = 34/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKGRAEFADLMYQVMKYAGTSTSATT 60 Query: 59 -------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRGI-ILTRDGR 105 V G + G+ +T T+ LD A+ G+ +F ++ P G TR+G+ Sbjct: 61 LSPSGIEVGIGVRPTAVTKVFTEGNLKATSTDSLDMAIAGNGFFQIQLPDGTIAYTRNGQ 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMG 159 F ++G++V+A G Y +L + IP+ NV G +S Q+ I + Sbjct: 121 FTKDNEGNIVNADG-YRLLPE----MTIPEGATAINVATDGTVSVMLPGEQQETQIGQVE 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L G + E + +D G T++ GF+E SN + EM + Sbjct: 176 LVQFINPAGLHSMGDNLYLETGASGAPVAGIATQDGLG-TIRHGFIELSNVQLVEEMTDL 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + + I ++ ML + + Sbjct: 235 ITGQRAYEAGSKAITTSDD-MLGIVNQL 261 >gi|91225874|ref|ZP_01260843.1| polar flagellar FlgF [Vibrio alginolyticus 12G01] gi|254230139|ref|ZP_04923534.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|262394938|ref|YP_003286792.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|269965423|ref|ZP_06179542.1| flagellar basal-body rod protein FlgF [Vibrio alginolyticus 40B] gi|91189524|gb|EAS75800.1| polar flagellar FlgF [Vibrio alginolyticus 12G01] gi|151937332|gb|EDN56195.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|262338532|gb|ACY52327.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|269829902|gb|EEZ84132.1| flagellar basal-body rod protein FlgF [Vibrio alginolyticus 40B] Length = 249 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + + F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM--QAYGEGHPSRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD +EG W ++ G LTR+G KV +G L +ASG Sbjct: 59 TERPGHNFAQGSVITTGRDLDVTIEGSGWISVLDHTGKEGLTRNGNLKVDQNGMLTNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + + + L Q + Sbjct: 119 -HLVLGENDAPITLPIPLSKIEIGRDGTISVLPQGAPAEEFQAVDRIKLVK-PNDQSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P P E + V+++ G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRHKTPNQPYEADATVSLQTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|192361762|ref|YP_001982398.1| flagellar basal body rod protein FlgG [Cellvibrio japonicus Ueda107] gi|190687927|gb|ACE85605.1| flagellar basal-body rod protein FlgG [Cellvibrio japonicus Ueda107] Length = 261 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A +++L+T+++N++N TVGF+ + F +++ + Sbjct: 1 MHSALYVSKTGLAAQDRQLATISNNLANVATVGFKRDRAIFEDLLYQNQRQPGAQETQET 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G+ T LD A++G + + P G TR+G+ Sbjct: 61 QLPSGLQLGTGVRVVATQKEFTEGNIQVTEQALDVAIDGRGFLQVLLPDGTIAYTRNGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G +V+A G I +P+ +G G ++ + + + L Sbjct: 121 QLNGEGQVVNADGYLL-----EPAIIVPEGVNKITIGSNGTVNAFAPGVADPQQLGDITL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + P E+ G ++K+G LE SN + + EM MI Sbjct: 176 TDFINPSGLQAIGGNLFLETPASGNPVQGIPGENGMG-SLKQGMLESSNVDIVEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ++ + +N+ Sbjct: 235 TTQRAYEMNSKVVSTADQMLQYITQNL 261 >gi|302872713|ref|YP_003841349.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] gi|302575572|gb|ADL43363.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] Length = 255 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 21/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----------EVVGAIK 49 M + + ++ + A+N++N +T GF+ + + V + Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVANVNTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-----IILTRDG 104 N I + G +I T L+ A+ G+ +FA+E P I+ TR+G Sbjct: 61 NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAIEVPGNQGAQQILYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + G LV+ G Y VL I Q + E+G + Q G+ + + + Sbjct: 121 AFTLNSQGELVTLDGFY-VLGQNGRIIL--QNGGQVRIDEQGNVYQDGRFVDRLRVVDFQ 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 Q + N+ + + + +G+LE SN NS+ EM MI++ + + + Sbjct: 178 DKQLLRKVGNNLFEADATAQQIP--FSGRIVQGYLEGSNVNSVQEMVNMINVLRAYEANQ 235 Query: 225 TLIDENEKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 236 KAFTIQDETLQKAVSEIA 253 >gi|292487941|ref|YP_003530816.1| flagellar basal-body rod protein FlgG [Erwinia amylovora CFBP1430] gi|292899160|ref|YP_003538529.1| flagellar basal-body rod protein FlgG [Erwinia amylovora ATCC 49946] gi|291199008|emb|CBJ46119.1| flagellar basal-body rod protein FlgG (distal rod protein) [Erwinia amylovora ATCC 49946] gi|291553363|emb|CBA20408.1| Flagellar basal-body rod protein flgG [Erwinia amylovora CFBP1430] gi|312172062|emb|CBX80319.1| Flagellar basal-body rod protein flgG [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLMYQTMRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T + D A+ G +F+++ P G TRDG F Sbjct: 61 TLPSGLQIGTGTRPVATERLHNQGNLSQTDSSKDVAINGQGFFSVQMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 + +G LV+ +G +PV I IP V G +S + + + L Sbjct: 121 QTDQNGQLVTNAG-FPVQPA----IVIPANSLSMTVSRDGVVSVTQQGQANPVQVGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E P + +G T+ +G++E SN N E+ MI Sbjct: 176 STFMNDAGLSSMGENLYQETQASGVPNESNPGNNGAG-TLYQGYVETSNVNVAEELVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + + Sbjct: 235 QTQRAYEINSKAISTSDQMLAKLTQ 259 >gi|260886211|ref|ZP_05897474.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|330839793|ref|YP_004414373.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|260863930|gb|EEX78430.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|329747557|gb|AEC00914.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] Length = 263 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + VA N++N +T G + ++ +F ++V + Sbjct: 1 MMRALWSAASGMKAQQDNMDVVAHNIANVNTFGSKKVRAEFQDLVYQNLRAAGAQSGADS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + G+ S+G D A++G+ +F +E P G TRDG F Sbjct: 61 QYPTGLAIGLGTRTAATQRIFTQGNLQSSGNPTDVAIQGEGFFRIEMPDGTIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV--IATMGLY 161 K+ + LV+ G YP+ D ++ P + G++S G V + + L Sbjct: 121 KLDQNRRLVTTDG-YPLADGITLDANAPSD--SIVIAGDGQVSCTPAGGNVTAVGQITLS 177 Query: 162 SVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + +E I P E+ +G T+ +G +E SN + EM MI Sbjct: 178 RFVNPAGLFAIGKNLFKETDASGNAIDSNPGEEGAG-TLTQGVVEMSNIQIVEEMVNMIV 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + S + I SMLE ++ Sbjct: 237 AQRAYESNSKAI-TTSDSMLEIANSL 261 >gi|86356312|ref|YP_468204.1| flagellar basal body rod protein FlgG [Rhizobium etli CFN 42] gi|86280414|gb|ABC89477.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 262 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +F++++ + N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V + G TG +LD AL G +F ++S G + TR G F Sbjct: 61 VVPEGANIGLGVQTSAVRNLHLQGELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 D G LV+ G Y VL I IPQ + GE+S V+ + L Sbjct: 121 NKNDQGQLVTIDG-YEVLPG----ITIPQGSTELTISRSGEVSAKLPGQTDPTVLGQLTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ + P E+ +K+G+LE SN + + E+ ++I Sbjct: 176 ADFVNEAGLQPIGDNLFQETPASGEAVVGNPDEEGF-AYMKQGYLESSNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 235 SAQRAYEMNSKVITTADEM 253 >gi|302392940|ref|YP_003828760.1| flagellar basal-body rod protein FlgF [Acetohalobium arabaticum DSM 5501] gi|302205017|gb|ADL13695.1| flagellar basal-body rod protein FlgF [Acetohalobium arabaticum DSM 5501] Length = 245 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 110/248 (44%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND---IDQ 54 M + A +R + + +N++N+ T G++ + FSE++ D I Sbjct: 1 MLRGLYTAASGMNASLKRTNIITNNLANSTTPGYKKDQTVNKSFSEMLLRRMPDKEVIGT 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + GS T D+A+EG+ +FA+++P GI TR G F + DG + Sbjct: 61 AGLGAKVDETVTDFSAGSVHKTDNPFDWAIEGEGFFAVQTPEGIRYTRSGDFTLNQDGQV 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V+ +G + + + + E NV + + G+V+ + + + + G V+ + Sbjct: 121 VTQNGNFVLGQAGPLEVV----GEQVNVDNQNNLVVDGQVVDQVRVVTFAENDGLVKEGD 176 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + P + ++ + +G+LE SN N + M MI T+ + S ++ ++S+ Sbjct: 177 D-LYRATPDVGNQFMATGKINQGYLESSNVNVVESMTNMIEATRHYESNQRVVKAYDQSL 235 Query: 235 LEAIRNIA 242 + + ++ Sbjct: 236 DKTVNSVG 243 >gi|261211320|ref|ZP_05925608.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC341] gi|260839275|gb|EEX65901.1| flagellar basal-body rod protein FlgG [Vibrio sp. RC341] Length = 262 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ + + A + ++T+++N++N T+GF+ + F ++ N + S Sbjct: 1 MQPALWVSKTGLDAQQTNITTISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 RLPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G++V++ Y + I IP+ +G GE+S Q +V+ + Sbjct: 121 TLDDEGAIVTSGSGYRLQPE----IIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ V++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLYLPTGASGEPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|283850807|ref|ZP_06368093.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. FW1012B] gi|283573730|gb|EFC21704.1| flagellar basal-body rod protein FlgG [Desulfovibrio sp. FW1012B] Length = 260 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 112/262 (42%), Gaps = 28/262 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S +A++ ++ T+++N++N +TVGF+ + +F +++ + + Sbjct: 1 MMRSLWTATTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTQQVAGTETVGGN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V + G +TG +LD A++G+ +F ++ + TR G FK Sbjct: 61 RLPTGLQVGLGVKPTTVHKFFTQGDLQNTGNQLDIAIQGEGFFKVDVNGRDLYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGLYS 162 + DG++V+A+G YP+ S +P + + E G +S Q G + LY+ Sbjct: 121 LNQDGTIVTANG-YPLQPAFS----VPAGTKSITITENGHLSCLDQNGAAQGETDIPLYT 175 Query: 163 VDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 S G + S + D + T+ +GFLE SN + EM +I Sbjct: 176 FINSPGLTAEGRNLYSTTQASGDAQEVTPGDQNAGTLAQGFLEMSNVELVDEMVGLIVGQ 235 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + + + + I + + A+ Sbjct: 236 RAYEANSKAITTADGMLQTAVN 257 >gi|163758015|ref|ZP_02165103.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] gi|162284304|gb|EDQ34587.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] Length = 262 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 101/266 (37%), Gaps = 31/266 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I A + L +A+N++N +T GF+ + +F++++ ++ + + Sbjct: 1 MKALAIAATGMNAQQLNLEVIANNVANINTTGFKRARAEFADLLYQVERNQGVPNASNQA 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + GS + T + D AL G WF +E+P G TR G F Sbjct: 61 IVPEGAHIGLGVQTSAVRNLHIQGSLVGTSNKFDLALVGRGWFQIETPDGETNYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 DG LV+ G V I P + + G++ + + + + L Sbjct: 121 NTNADGELVTIDGYTVVPG-----IVFPDEASEVVISRTGQVFARIGNEAEMQELGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ P +D +++G+LE SN + + E+ +I Sbjct: 176 ANFVNEAGLEPLGDNLFRETTASGPANVGVPDDPGFAHIQQGYLEGSNVDPIKEITDLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 236 AQRAYEMNSKIIQAADEMASTVSKNL 261 >gi|52841453|ref|YP_095252.1| flagellar basal body rod protein FlgG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628564|gb|AAU27305.1| flagellar basal body rod protein FlgG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 261 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M+ + + + A ++ ++T+A+N++N +T F+ + F +++ GA + Sbjct: 1 MEPALWVSKSGLEAQDKNIATIANNLANVNTTAFKKGRALFEDLIYQNLRQAGAQSSQNS 60 Query: 54 QKISFVASGKEYL------SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + + G GS +T LD A+EG +F + P G TRDG F Sbjct: 61 QIPTGINMGTGVHLVATEKIFSQGSLQNTQNALDVAIEGRGFFTVLMPDGTQSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K G +V+++G YP+ I IP + +G G +S VI + L Sbjct: 121 KTDSTGQIVNSNG-YPLQPN----ITIPPQTTKITIGTDGTVSALVAGNNAPSVIGNIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G + + + TP+ D G T+ +G LE SN N + E+ MI Sbjct: 176 TDFINPAGLQPIGQNLYTETVASGTPITDNPGNSGLGTLLQGSLEASNVNVVEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + I + + + + Sbjct: 236 AQRSYEITAKSIQTVDSMLQYLTQTL 261 >gi|87119674|ref|ZP_01075571.1| Flagella basal body rod protein [Marinomonas sp. MED121] gi|86165150|gb|EAQ66418.1| Flagella basal body rod protein [Marinomonas sp. MED121] Length = 261 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 110/266 (41%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A++++LS +++N++N T GF+ + F +++ Sbjct: 1 MHPALWVSKTGLSAMDKQLSVISNNLANVSTTGFKKDRAVFEDLLYHTVQQPGGLQSQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V G + T +LD A++G +F + P G + TRDG+F Sbjct: 61 QLPSGLQMGAGVRVSATQKDFSEGDYNVTDRDLDVAIQGQGFFQILMPDGNMGYTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ +G LV++SG + IPQ +G+ G +S + + + + L Sbjct: 121 QLNSEGDLVTSSGFLV-----EPQVTIPQDAMSVTIGDDGTVSIVRQGASESEGVGQLSL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 +G + + P+ D+ G + V++ +E SN NS+ E+ +I Sbjct: 176 AGFINPEGLSSIGQNLFVETSASGAPIIDVPGTSALGNVRQNMVETSNVNSVEELVSLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + M I+ + Sbjct: 236 AQRGYEMNSKVVSAADGMMSFVIQQL 261 >gi|163802602|ref|ZP_02196494.1| flagellar L-ring protein precursor H [Vibrio sp. AND4] gi|159173685|gb|EDP58504.1| flagellar L-ring protein precursor H [Vibrio sp. AND4] Length = 249 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD +EGD W ++ G LTR+G KV +G L +ASG Sbjct: 59 TERPGHNFAQGSVITTGRDLDVTIEGDGWISVMDHTGKEGLTRNGNLKVDQNGLLTNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + V+ + L D Q + Sbjct: 119 -HVVLGENDAPITLPIPVSKIEIGRDGTISVLPQGAPAEELEVVDRIKLVRTDD-QNLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P P E ++++ G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRHKTPNQPYEVDGSISIQTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|161367438|ref|YP_868965.2| flagellar basal body rod protein FlgF [Shewanella sp. ANA-3] Length = 247 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G STG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 VETPSANFRSGPIKSTGRDLDVAIKGDGWFAVQAQDGSEAYTRSGSLSFDSTGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P E + + G IS + + + + L + +Q + Sbjct: 119 N-PVMGDAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVVEEVGRLKLVNPGNAQ--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + P V V+ G +E SN N + EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLVSGDPAPADPSVFVESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|157959900|ref|YP_001499934.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] gi|157844900|gb|ABV85399.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] Length = 261 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ ++ ++ Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + G ++T +LD A+EG +F +E G + TRDG+F Sbjct: 61 QLPAGLQLGTGTRVAGTQKVFTPGDMLTTNQQLDLAIEGQGFFQIEEANGDVSFTRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 DG +V++ G V IQIP + + G +S + + + L Sbjct: 121 YRDSDGLMVTSQGLPLV-----PNIQIPDEALTVTIASDGIVSAQMAGQADSQELGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G R ++ +E ++G V++G LE +N N + EM +MI Sbjct: 176 VNFTNPAGLEARGSNLYRETGASGAAIEGIAGDEALGQVRQGALEGANVNVVEEMVEMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ ML+ + Sbjct: 236 TQRAYEMNAKVVSASDD-MLKFLNQ 259 >gi|56460250|ref|YP_155531.1| flagellar basal body rod protein FlgG [Idiomarina loihiensis L2TR] gi|56179260|gb|AAV81982.1| Flagella basal body rod protein [Idiomarina loihiensis L2TR] Length = 262 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 117/266 (43%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A ++ +S +++N++N+ T+GF+ + F +++ N + + Sbjct: 1 MNPALWISKTGLDAQQRDISVISNNLANSSTIGFKKSRAVFEDLLYQNINQPGGQSAQDT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD ++G +F + P G I TR+G+F Sbjct: 61 ELPNGLMLGAGTKVVATQKSHTQGNVQTTDNSLDVMIDGKGFFQVLMPDGNISYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + ++G +V++ Y + IQIP+ ++ ++GE++ V+ + L Sbjct: 121 SLNEEGEIVTSGNGYTIEPA----IQIPEDAMSVSISQEGEVTVTQPGNPDNVVVGQINL 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E + + P D G T+ +G LE SN N E+ +I Sbjct: 177 VNFINPAGLQPMGQNLYKETAVSGAPLEAVPGVDGMGNTI-QGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML I Sbjct: 236 ESQRGYEMNSKVISSVDQ-MLSYINQ 260 >gi|254508453|ref|ZP_05120573.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus 16] gi|219548663|gb|EED25668.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus 16] Length = 262 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVG++ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 V D+G++V++ Y + I IP+ VG GE+S Q V+ + Sbjct: 121 TVNDEGAIVTSGSGYNLQPE----IVIPEDAISITVGTDGEVSVRVRGEQNNVVVGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G +++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPVGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|15642194|ref|NP_231826.1| flagellar basal body rod protein FlgG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586257|ref|ZP_01676047.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 2740-80] gi|121726538|ref|ZP_01679787.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V52] gi|147674573|ref|YP_001217712.1| flagellar basal body rod protein FlgG [Vibrio cholerae O395] gi|153213600|ref|ZP_01948873.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 1587] gi|153817095|ref|ZP_01969762.1| flagellar basal-body rod protein FlgG [Vibrio cholerae NCTC 8457] gi|153820850|ref|ZP_01973517.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|153825330|ref|ZP_01977997.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-2] gi|153829351|ref|ZP_01982018.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 623-39] gi|183179567|ref|ZP_02957778.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-3] gi|227082319|ref|YP_002810870.1| flagellar basal-body rod protein FlgG [Vibrio cholerae M66-2] gi|229507728|ref|ZP_04397233.1| flagellar basal-body rod protein FlgG [Vibrio cholerae BX 330286] gi|229512077|ref|ZP_04401556.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|229513839|ref|ZP_04403301.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TMA 21] gi|229519213|ref|ZP_04408656.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC9] gi|229522144|ref|ZP_04411561.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TM 11079-80] gi|229524190|ref|ZP_04413595.1| flagellar basal-body rod protein FlgG [Vibrio cholerae bv. albensis VL426] gi|229528800|ref|ZP_04418190.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 12129(1)] gi|229607232|ref|YP_002877880.1| flagellar basal body rod protein FlgG [Vibrio cholerae MJ-1236] gi|254225803|ref|ZP_04919408.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V51] gi|254849324|ref|ZP_05238674.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MO10] gi|255747106|ref|ZP_05421051.1| flagellar basal-body rod protein FlgG [Vibrio cholera CIRS 101] gi|262161350|ref|ZP_06030460.1| flagellar basal-body rod protein FlgG [Vibrio cholerae INDRE 91/1] gi|262167779|ref|ZP_06035481.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC27] gi|262191687|ref|ZP_06049863.1| flagellar basal-body rod protein FlgG [Vibrio cholerae CT 5369-93] gi|297580841|ref|ZP_06942766.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC385] gi|298500427|ref|ZP_07010232.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MAK 757] gi|9656751|gb|AAF95340.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549523|gb|EAX59549.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 2740-80] gi|121630991|gb|EAX63370.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V52] gi|124115799|gb|EAY34619.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 1587] gi|125621709|gb|EAZ50038.1| flagellar basal-body rod protein FlgG [Vibrio cholerae V51] gi|126512363|gb|EAZ74957.1| flagellar basal-body rod protein FlgG [Vibrio cholerae NCTC 8457] gi|126521642|gb|EAZ78865.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|146316456|gb|ABQ20995.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O395] gi|148875192|gb|EDL73327.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 623-39] gi|149741014|gb|EDM55083.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-2] gi|183012978|gb|EDT88278.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MZO-3] gi|227010207|gb|ACP06419.1| flagellar basal-body rod protein FlgG [Vibrio cholerae M66-2] gi|227014091|gb|ACP10301.1| flagellar basal-body rod protein FlgG [Vibrio cholerae O395] gi|229332574|gb|EEN98060.1| flagellar basal-body rod protein FlgG [Vibrio cholerae 12129(1)] gi|229337771|gb|EEO02788.1| flagellar basal-body rod protein FlgG [Vibrio cholerae bv. albensis VL426] gi|229341069|gb|EEO06074.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TM 11079-80] gi|229343902|gb|EEO08877.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC9] gi|229349020|gb|EEO13977.1| flagellar basal-body rod protein FlgG [Vibrio cholerae TMA 21] gi|229352042|gb|EEO16983.1| flagellar basal-body rod protein FlgG [Vibrio cholerae B33] gi|229355233|gb|EEO20154.1| flagellar basal-body rod protein FlgG [Vibrio cholerae BX 330286] gi|229369887|gb|ACQ60310.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MJ-1236] gi|254845029|gb|EET23443.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MO10] gi|255735508|gb|EET90908.1| flagellar basal-body rod protein FlgG [Vibrio cholera CIRS 101] gi|262023844|gb|EEY42543.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC27] gi|262028661|gb|EEY47315.1| flagellar basal-body rod protein FlgG [Vibrio cholerae INDRE 91/1] gi|262032426|gb|EEY50988.1| flagellar basal-body rod protein FlgG [Vibrio cholerae CT 5369-93] gi|297534667|gb|EFH73503.1| flagellar basal-body rod protein FlgG [Vibrio cholerae RC385] gi|297541120|gb|EFH77174.1| flagellar basal-body rod protein FlgG [Vibrio cholerae MAK 757] gi|327484714|gb|AEA79121.1| Flagellar basal-body rod protein FlgG [Vibrio cholerae LMA3894-4] Length = 262 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 111/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ + + A + ++T+++N++N T+GF+ + F ++ N + S Sbjct: 1 MQPALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGAQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 RLPSGLMLGAGSKVVATQKVHTNGNVQTTSNSLDMMIEGDGFFQILMPDGNIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G++V++ Y + I IP+ +G GE+S Q +V+ + Sbjct: 121 TLDDEGAIVTSGAGYRLQPE----IIIPEDAISITIGNDGEVSVRVRGQQDNQVLGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ +++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPVGQNLYLPTGASGEPQEGVPGLDGLGDIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|295400717|ref|ZP_06810694.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112591|ref|YP_003990907.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] gi|294977298|gb|EFG52899.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217692|gb|ADP76296.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] Length = 274 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 103/274 (37%), Gaps = 35/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV------------ 45 M F + +A ++R+ + +N++N +T G++ + F E+ Sbjct: 1 MLRGFYTAASGMMAQQRRVEMLTNNIANANTPGYKADQAALRAFPELFLSRLEETTVPTK 60 Query: 46 -GAIKNDIDQKISFVASGKEY----LSKEVGSFISTGTELDFAL--------EGDAWFAL 92 + + + +G G TG D AL G +F + Sbjct: 61 EAPRSFPFNAAVGPINTGVYMQELIPDFRQGDIKETGRPTDIALINGALPAAGGTLFFVV 120 Query: 93 ESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 ++ G I TR+G F V G L + G Y VLD I +P +D F V G I Sbjct: 121 QNENGDIRYTRNGNFTVNPQGFLTTNDGWY-VLDENGQRIALPSED--FTVNADGTIVAG 177 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-DLSGVT--VKRGFLEDSNANSMY 208 IA + + V+ N P + VT K+GF+E SN + Sbjct: 178 NARIARINIAFAANPNTLVKEGNGLFRSEAGMLPSALNNPNVTYTFKQGFVERSNVDLNR 237 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M +M+ + F + ++ +KSM +A+ I Sbjct: 238 AMTEMLSAYRAFEANQKIVQAYDKSMEKAVNEIG 271 >gi|226321475|ref|ZP_03797002.1| flagellar hook-basal body complex protein [Borrelia burgdorferi Bol26] gi|226233271|gb|EEH32023.1| flagellar hook-basal body complex protein [Borrelia burgdorferi Bol26] Length = 282 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 113/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L TV++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G++ Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITHQGQVFHNSNFESDPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ Sbjct: 177 VSEYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDISLRPKIETET 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + + + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTLQTEDSLLGKLINEIG 280 >gi|33601543|ref|NP_889103.1| flagellar basal body rod protein FlgG [Bordetella bronchiseptica RB50] gi|33575979|emb|CAE33058.1| flagellar basal-body rod protein [Bordetella bronchiseptica RB50] Length = 261 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 98/266 (36%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + + +++N++N T GF+ + F +++ ++ Sbjct: 1 MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKRGRAVFQDLMYQTLRQPGAQVGDAN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G+ +TG E+D A++G + +E P G TRDG Sbjct: 61 QLPSGLQLGTGVQVAATQRVFSQGNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-------KGKVIATMG 159 +V +G L +A G + PI +P +G+ G +S I + Sbjct: 121 QVDQNGQLTTAGGY-----VIQPPINVPDNALSLTIGKDGTVSVTQPGAAGTNVQIGQLQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + + G + E P P D +G +++ ++E SN N E+ M Sbjct: 176 VATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQ-YVETSNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + +++ + + Sbjct: 235 ITTQRAYEMNSKAVKTSDEMLARLTQ 260 >gi|153001470|ref|YP_001367151.1| flagellar basal body rod protein FlgG [Shewanella baltica OS185] gi|151366088|gb|ABS09088.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS185] Length = 262 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ +++N++N TVG++ + F +++ N S Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSSSNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP V +GEIS +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVLQPA----ITIPDNATSITVSAEGEISVKTPGTADNQVVGQLTM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLSYVTQNL 262 >gi|320530444|ref|ZP_08031502.1| putative flagellar basal body rod protein FlgG [Selenomonas artemidis F0399] gi|320137277|gb|EFW29201.1| putative flagellar basal body rod protein FlgG [Selenomonas artemidis F0399] Length = 266 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 108/266 (40%), Gaps = 27/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDID---- 53 M I + + + +A+N++N GF+ + +F ++ ND Sbjct: 1 MWRGLYIAASGMITETKHTDMIANNLANASNTGFKRDDMAIREFEPMLLRRINDYTADTD 60 Query: 54 -------------QKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPR 96 ++ + G G+ +TG DFA+ G+ +F +++P+ Sbjct: 61 VTSFKGFRLGHGAPRVGMLGLGSAVDEIATDHLQGALQTTGNTYDFAISGEGYFVIDTPQ 120 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G TRDG F + G L + G+ VL PI IP NV G I IA Sbjct: 121 GPRYTRDGSFYRSASGQLQNVRGQ-AVLSAQGRPINIPADATRVNVSGDGRIYVGNTEIA 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G D +++ ++ P P + T+++G LE SN + + EM ++I+ Sbjct: 180 QLGFVQFDAPDAVIKQGDNLYRPQEGARPTQATG--TIEQGLLEMSNTSIVTEMVELINN 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + + + + +A+ ++ Sbjct: 238 YRVYEAGSRAVQTQDSLLDKAVNDVG 263 >gi|84388093|ref|ZP_00990989.1| Flagellar basal body rod protein FlgG [Vibrio splendidus 12B01] gi|84377160|gb|EAP94030.1| Flagellar basal body rod protein FlgG [Vibrio splendidus 12B01] Length = 262 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N T+GF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F +E P G +R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG++V++ Y + I IP+ VG GE+S Q V+ + + Sbjct: 121 TLNGDGAIVTSGQGYALQPE----IVIPEDAISVTVGNDGEVSVRLRGEQNNVVVGQITI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G +++ LE SN N E+ MI Sbjct: 177 TDFVNPGGLEPVGQNLYLPTGASGDPQEGVPGFDGLGNIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISSVDKMM 255 >gi|167626157|ref|YP_001676451.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] gi|167356179|gb|ABZ78792.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] Length = 261 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 118/265 (44%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ ++ ++ Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + + G ++T +LD A+EG +F +E G + +RDG+F Sbjct: 61 ELPSGLQLGTGTRVVGTQKVFTPGDMLTTNQQLDMAIEGQGFFQIEEANGELSYSRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +G +V++ G V I+IP++ + G +S + + + L Sbjct: 121 YRNSEGLMVTSQGLPLV-----PNIEIPEEALTVTIASDGIVSAQMAGQTDAQELGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G R N+ +E ++G +++G LE +N N + EM +MI Sbjct: 176 VNFTNPAGLEARGNNLYRETGASGAAVEGIAGDQALGQIRQGALEGANVNVVEEMVEMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ ML+ + Sbjct: 236 TQRAYEMNAKVVSASDD-MLKFLNQ 259 >gi|209547928|ref|YP_002279845.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533684|gb|ACI53619.1| flagellar basal-body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 262 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 104/259 (40%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +FS+++ + N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V + G TG +LD AL G +F ++S G + TR G F Sbjct: 61 VVPEGANIGLGVQTSAVRNLHLQGELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 D G LV+ G Y VL I IP + G++S V+ + L Sbjct: 121 NKNDQGQLVTIDG-YEVLPG----ITIPTGSTELTISRSGQVSAKLPGAADATVLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E + + P E+ +K+G+LE SN + + E+ ++I Sbjct: 176 ADFVNEAGLQPLGDNLFQETAASGEAVVGNPDEEGF-AYMKQGYLESSNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 235 SAQRAYEMNSKVITTADEM 253 >gi|146293689|ref|YP_001184113.1| flagellar basal body rod protein FlgF [Shewanella putrefaciens CN-32] gi|145565379|gb|ABP76314.1| flagellar basal-body rod protein FlgF [Shewanella putrefaciens CN-32] gi|319427088|gb|ADV55162.1| flagellar basal-body rod protein FlgF [Shewanella putrefaciens 200] Length = 247 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 15/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ +N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYISMSGAKQNMHELALRGNNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 IETPSANFRSGPIKTTGRDLDVAIKGDGWFAVQAKDGAEAYTRSGSLSFDATGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P + + + G IS + + + + L + +Q + Sbjct: 119 N-PVMGDAG-PIVLPLPIDKVTISQDGIISVRPQGATAEVIEEVGRLKLVNPGNAQ--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V V+ G +E SN N + EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLVSGNDAPADPNVAVESGAVEGSNVNPVDEMVSLIELQRQFEMQVKMMKTAE 234 Query: 232 K 232 + Sbjct: 235 E 235 >gi|145297456|ref|YP_001140297.1| lateral flagellar basal-body rod protein LfgG [Aeromonas salmonicida subsp. salmonicida A449] gi|142850228|gb|ABO88549.1| lateral flagellar basal-body rod protein LfgG [Aeromonas salmonicida subsp. salmonicida A449] Length = 261 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 108/260 (41%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + +++++++N++N +TVGF+ +V F ++ ++ Sbjct: 1 MHAALWVSKTGLSAQDAKMASISNNLANVNTVGFKRDRVAFEDLFYQVQRQPGAQQDQQN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V G F +T ELD A+ G +F +E P G TR+G++ Sbjct: 61 LSPIGIQMGNGVRVVGTQKVFTPGQFQNTNQELDMAVVGAGFFGVERPDGETAYTRNGQW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +G LV++ G P+L IQIP ++G G +S Q+ + + L Sbjct: 121 HRNAEGLLVNSDG-LPMLPQ----IQIPDNATKVSIGTDGTVSATLPGQQENVELGRITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + R I P E+ G +K+ LE SN N + EM MI Sbjct: 176 TNFTNPAGLEALGGNLYRATGASGEAIEGVPGEEAMGA-IKQFTLESSNVNVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ ++ + Sbjct: 235 TTQRAYEMNAKVVSAADQML 254 >gi|325274797|ref|ZP_08140825.1| flagellar basal body rod protein FlgG [Pseudomonas sp. TJI-51] gi|324100065|gb|EGB97883.1| flagellar basal body rod protein FlgG [Pseudomonas sp. TJI-51] Length = 261 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 106/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+ +++N++N T GF+ + +F++++ +K Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQVKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V S GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+A+G I +P + F VG G +S +VI + Sbjct: 121 HLNSDGQIVTANGY-----ALEPAIVVPNDAQTFTVGTDGTVSITTAGNPAAQVIGNIQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ TP + G T ++ LE+SN +++ E+ MI Sbjct: 176 ADFINPAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTT-QQQTLENSNVSTVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQQL 261 >gi|223889387|ref|ZP_03623973.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 64b] gi|223885073|gb|EEF56177.1| flagellar hook-basal body complex protein [Borrelia burgdorferi 64b] Length = 282 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 113/284 (39%), Gaps = 46/284 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + +A ++L TV++N++N D +G++ + F E++ ND Sbjct: 1 MVRGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKF 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + + V + Y E G +TG LD AL +F +++ G T Sbjct: 61 PKGHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------------ 149 R+G F + +G LV+ SG +PVL I K F + +G++ Sbjct: 121 RNGSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITHQGQVFHNSNFESDPKRL 176 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGF 198 + +++ T+ + + + + ++ NS +++ ++ Sbjct: 177 VSEYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDISLRPKIEIET 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SN N++ EM MI + + + + I + + + I I Sbjct: 237 LEASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 280 >gi|85859196|ref|YP_461398.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] gi|85722287|gb|ABC77230.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] Length = 260 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 99/265 (37%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S A + VA+N++N +TVGF+ + F +++ + + S Sbjct: 1 MIRSLWTAATGMQAQQVEQDVVANNLANVNTVGFKKSRADFQDLMYQLSTKAGSETSSGN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V G + TG D+A+EGD +F L+ + TR G FK Sbjct: 61 QLTVGIEIGMGVKPVATQKIFSQGDYQQTGNSFDWAIEGDGFFQLDDNGTTVYTRAGNFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYS 162 V DG L + G + + IPQ F + G + + + L Sbjct: 121 VNRDGVLCNTDGLQLI-----PEVSIPQDAVTFTLDSGGTWTAADENGNTLATGRIELAK 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + + G + P ED G T + FLE SN N + EM +MI Sbjct: 176 FINPAGLSSIGRNLFEKTEGSGEPLTGNPGEDGLGTT-SQRFLEMSNVNVIDEMVKMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I + +ML I N+ Sbjct: 235 QRAYEINSKSIVTAD-NMLSMINNL 258 >gi|332140548|ref|YP_004426286.1| flagellar basal body rod protein FlgG [Alteromonas macleodii str. 'Deep ecotype'] gi|327550570|gb|AEA97288.1| flagellar basal body rod protein FlgG [Alteromonas macleodii str. 'Deep ecotype'] Length = 262 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 114/266 (42%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ V++N++N TVGF+ + F +++ N + S Sbjct: 1 MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAVFEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + SG + ++ + G+ ++T LD +++G +F + P G +R+G+F Sbjct: 61 ELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQPDGTIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V++ + + + IP+ + + + GEIS + +V+ + + Sbjct: 121 SLNDQGQIVTSGAGFLLQPE----VAIPEDAQQITISQDGEISVSIRGQAEPQVLGQLNI 176 Query: 161 YSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 G + P++ + G+ + +G LE SN N E+ +I Sbjct: 177 SDFVNPTGLQPTGQNLFVETASSGAPIQGIPGLQGLGYISQGTLETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + I+ + Sbjct: 237 SQRLYEMNSKVISSVDQMLGQVIQQL 262 >gi|297530598|ref|YP_003671873.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297253850|gb|ADI27296.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 288 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 105/285 (36%), Gaps = 46/285 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ A + +L + +N++N +T GF+ + F +++ + + Sbjct: 1 MLRSMYSGIGAMRNFQTKLDVIGNNIANVNTYGFKKGRTIFKDLMSQTISGASGPNAGAG 60 Query: 61 SGKEY--------------LSKEVGSFISTGTELDFALEGDAWFAL-ESPRGI----ILT 101 G GS +TG LD A+ GD +F L E G + T Sbjct: 61 RGGTNPKQVGLGSQLAAIDTVHTQGSLQTTGRVLDLAISGDGFFILGELNNGNLINPLFT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLD--------MASVPIQIPQKDEIFNVGEKGEIS---- 149 R G F + +G +V+A G Y V + IQIP + ++G G ++ Sbjct: 121 RAGNFYLDKEGYIVNADGLYLVGEGYQNGAFTGKRARIQIPTDAKSVSIGADGVVNYVDA 180 Query: 150 -QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP--------------PTPLEDLSGVTV 194 +V + L + G + + P ++ ++ Sbjct: 181 VGNLQVAGRIRLAKFPNNDGLEKVGGNLFRETANSGTIINPNNQNEWIAYPPQESGAGSI 240 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G LE SN + E +MI + F + T +I +++ + E + Sbjct: 241 VSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVN 285 >gi|306820920|ref|ZP_07454540.1| flagellar basal-body rod protein FlgG [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551034|gb|EFM39005.1| flagellar basal-body rod protein FlgG [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 270 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 113/273 (41%), Gaps = 38/273 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + + A + + +++N+SN +T GF+ K +F +++ N Sbjct: 1 MRALWTAASGMKAQQLNVDVISNNISNVNTTGFKAQKTEFKDLLYTYSNPVSNEAKMGQP 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFA-LEGDAWFALESPRGI------IL 100 + + VA+ + Y + GS T D A ++G+A+F +E P + Sbjct: 61 VNLQVGHGVMPVATSRIYTT---GSADKTDNPTDLAMVQGNAFFVVEDPNAPGEEAKRLY 117 Query: 101 TRDGRFKV---TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK---- 153 TRDG FK + +LV++ G+ VL +QIP+ + F V + G ++ K Sbjct: 118 TRDGSFKFSVEDNQLTLVTSQGE-KVLTTDDGYVQIPENSKDFAVSQNGTVTAKSAEGEL 176 Query: 154 -VIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT---VKRGFLEDSNANSMY 208 + + + +G ++ P P+++ + + +G+LE SN + Sbjct: 177 LELGQLKTVTFVNPEGLKAVGSNFYVPTDNSGEPVQEENETRESKIYQGYLEMSNVQLVD 236 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +MI + + + + + ML I + Sbjct: 237 EMVRMITAQRAYEINSKTVQTADD-MLNTINQL 268 >gi|239995123|ref|ZP_04715647.1| flagellar basal body rod protein FlgG [Alteromonas macleodii ATCC 27126] Length = 262 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 115/266 (43%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ V++N++N TVGF+ + F +++ N + S Sbjct: 1 MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAVFEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + SG + ++ + G+ ++T LD +++G +F + P G +R+G+F Sbjct: 61 ELPSGLMLGSGSKVVATQKAHTQGNLLTTENALDMSIQGRGYFEILQPDGTIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V++ + + + IP+ + + + GEIS + +V+ + + Sbjct: 121 SLNDQGQIVTSGAGFLLQPE----VAIPEDAQQITISQDGEISVSIRGQAEPQVLGQLNI 176 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 G N + P++ + G+ + +G LE SN N E+ +I Sbjct: 177 SDFVNPTGLQPTGQNLYVETASSGAPIQGIPGLQGLGYISQGTLETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + I+ + Sbjct: 237 SQRLYEMNSKVISSVDQMLGQVIQQL 262 >gi|83720527|ref|YP_440802.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis E264] gi|167617586|ref|ZP_02386217.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis Bt4] gi|257140547|ref|ZP_05588809.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis E264] gi|83654352|gb|ABC38415.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis E264] Length = 253 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 20/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M + ++ S VA+N++N T GFR F V G+ D Sbjct: 1 MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 ++ S G TG LD A++G W ++ P G TR G V +G L Sbjct: 61 RTYTLSSTPGADFAPGPIERTGNPLDVAIQGPGWLSVMLPDGSEAYTRAGNLHVDQNGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS 166 V+A+ PV+ P+ +P + +G G +S +I + L + D + Sbjct: 121 VTAN-NLPVVGNGG-PLAVPPNAQ-LTIGADGTVSALMPGDPPTAVAMIDQLKLVNPDPA 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++R + G+ P + V V LE SN N + M MI + F T L Sbjct: 178 T--MKRGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKL 235 Query: 227 IDENEKSMLEAIRNI 241 I +++ +A + Sbjct: 236 IQSADQN-EQAANQL 249 >gi|15595120|ref|NP_212909.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi B31] gi|2688723|gb|AAC67131.1| flagellar hook-basal body complex protein (flhO) [Borrelia burgdorferi B31] Length = 300 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 112/282 (39%), Gaps = 46/282 (16%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND-------- 51 + +A ++L TV++N++N D +G++ + F E++ ND Sbjct: 21 RGIYTAASGMMAERRKLDTVSNNLANIDLIGYKKDLSIQKAFPEMLIRRLNDDGLYKFPK 80 Query: 52 --------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRD 103 + + + V + Y E G +TG LD AL +F +++ G TR+ Sbjct: 81 GHLETAPVVGKIGTGVEENEIYTVFEQGPLKTTGNPLDLALTDQGFFVIQTSDGERYTRN 140 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------------- 149 G F + +G LV+ SG +PVL I K F + +G++ Sbjct: 141 GSFTIGKEGILVTKSG-FPVLGEKGY---IYLKKNNFKITPQGQVFHNSNFESDPKRLVS 196 Query: 150 ------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLE 200 + +++ T+ + + + + ++ NS +++ ++ LE Sbjct: 197 EYENSWENYELLDTIRIVNFENPRFLKKQGNSLWIDTKTSGKAQEIDISLRPKIETETLE 256 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 SN N++ EM MI + + + + I + + + I I Sbjct: 257 ASNVNAVKEMVLMIEINRAYEANQKTIQTEDSLLGKLINEIG 298 >gi|24374756|ref|NP_718799.1| flagellar basal body rod protein FlgF [Shewanella oneidensis MR-1] gi|24349420|gb|AAN56243.1|AE015761_13 flagellar basal-body rod protein FlgF [Shewanella oneidensis MR-1] Length = 247 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G STG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 VETPSANFRSGPIKSTGRDLDVAIKGDGWFAVQAQDGSEAYTRSGSLSFDSTGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P E + + G IS + + + + L + +Q + Sbjct: 119 N-PVMGDAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVVEEVGRLKLVNPGNAQ--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + P V+V+ G +E SN NS+ EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLVSGDPAPADPSVSVESGAVEGSNVNSVDEMVSLIDLQRQFELQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|320537132|ref|ZP_08037104.1| flagellar basal-body rod protein FlgG [Treponema phagedenis F0421] gi|320146005|gb|EFW37649.1| flagellar basal-body rod protein FlgG [Treponema phagedenis F0421] Length = 264 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 34/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + + + TVA+N++N +T GF+ + +F +++ + Sbjct: 1 MIRSLWTAASGMNSQQANIDTVANNLANVNTSGFKKQRAEFEDLLYQTVKSAGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G+ TG D A+ G+ +F + G TRDG F Sbjct: 61 ITPVGIQMGHGSKLAATQRIFEQGALQHTGLTSDVAVAGEGFFRVLQYDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQKGKV------IATM 158 K+ D LV+++G + I P+ + + + G ++ + + + Sbjct: 121 KIDADRQLVTSNGLRVL-----PEIIFPENYVERSIAISQDGRVTVRVGEEDEPIDVGQI 175 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY + G ++ IP P + G T + FLE SN +++ EM Sbjct: 176 ELYRFQNNAGLAAEGSNLFKQTPASGQAIPGRPGFNGFGKT-EHKFLEMSNVSTVSEMVN 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + + I ++ + A+ Sbjct: 235 MIVAQRAYEFNSKAIQTSDNMLGTAV 260 >gi|253702432|ref|YP_003023621.1| flagellar basal body rod protein FlgG [Geobacter sp. M21] gi|251777282|gb|ACT19863.1| flagellar basal-body rod protein FlgG [Geobacter sp. M21] Length = 262 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 32/264 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + VA N++N T GF+ + F +++ + + Sbjct: 1 MIRALWTAASGMQAQQLNIDVVAHNLANAATTGFKKSRADFQDLMYQTEKTTGAPATNAT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G G+ I+TG ELD A++GD + ++ G TR G Sbjct: 61 TIPTGIQVGLGVRPGAVTKVFTTGNIIATGNELDLAIQGDGFLQVQQSDGSTAYTRAGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 K G +V++ G+ PV+ + IP VG G +S + + T+ L Sbjct: 121 KRDGQGRVVTSDGQ-PVIPE----VLIPSNATRVTVGTDGTVSVQQAGQTAATTVGTLQL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + P T ++ G T+++GFLE+SN + M EM MI Sbjct: 176 ASFSNPAGLNAIGKNLFLPTDSSGAATTGTAGQNGLG-TIEQGFLENSNVSIMEEMVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 + + + I +++ + +A Sbjct: 235 VGQRAYEINSKAIQASDEMLQQAA 258 >gi|121596118|ref|YP_988014.1| flagellar basal-body rod protein FlgF [Acidovorax sp. JS42] gi|222112273|ref|YP_002554537.1| flagellar basal-body rod protein flgf [Acidovorax ebreus TPSY] gi|120608198|gb|ABM43938.1| flagellar basal-body rod protein FlgF [Acidovorax sp. JS42] gi|221731717|gb|ACM34537.1| flagellar basal-body rod protein FlgF [Acidovorax ebreus TPSY] Length = 246 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 97/243 (39%), Gaps = 11/243 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A R + +A+N++N T GFR F V ++ F Sbjct: 1 MDRIIYTSMTGANAAAHRQAVLANNLANASTTGFRAEMSNFRSV--PLQGGGSTTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G +TG LD G+AWFA++ G TR G F+VT G LV+++G Sbjct: 59 EATSGHVDTPGPAQTTGRPLDAMAVGNAWFAVQGLDGVETYTRAGSFQVTAAGQLVTSTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN 174 VL PI +P E +G G I+ + + +A + L + + ++R + Sbjct: 119 -MAVLSDGGAPIDVPPNAE-VTLGADGTITARLAGEVPQPVARLKLAT-PAADNPLKRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ PL ++ G LE SN N + M MI ++F L+ E Sbjct: 176 DGLFRTAGGDPLPADPNARLRSGVLEGSNVNPVECMVGMIAAARQFEQQMRLLQTAESDD 235 Query: 235 LEA 237 A Sbjct: 236 KSA 238 >gi|126175144|ref|YP_001051293.1| flagellar basal body rod protein FlgG [Shewanella baltica OS155] gi|217972600|ref|YP_002357351.1| flagellar basal body rod protein FlgG [Shewanella baltica OS223] gi|304409976|ref|ZP_07391595.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|307302311|ref|ZP_07582069.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] gi|125998349|gb|ABN62424.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS155] gi|217497735|gb|ACK45928.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS223] gi|304351385|gb|EFM15784.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS183] gi|306914349|gb|EFN44770.1| flagellar basal-body rod protein FlgG [Shewanella baltica BA175] Length = 262 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 108/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ +++N++N TVG++ + F +++ N S Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSSSNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP V +GE+S +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVLQPA----ITIPDNATSITVSAEGEVSVKTPGTADNQVVGQLTM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLSYVTQNL 262 >gi|86146153|ref|ZP_01064479.1| polar flagellar FlgG [Vibrio sp. MED222] gi|218708806|ref|YP_002416427.1| flagellar basal body rod protein FlgG [Vibrio splendidus LGP32] gi|85836100|gb|EAQ54232.1| polar flagellar FlgG [Vibrio sp. MED222] gi|218321825|emb|CAV17796.1| Flagellar basal-body rod protein flgG [Vibrio splendidus LGP32] Length = 262 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N T+GF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F +E P G +R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTHGNAQTTSNSLDMMIEGDGFFQVEMPDGETGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG++V++ Y + I IP+ VG GE+S Q V+ + + Sbjct: 121 TLNGDGAIVTSGQGYALQPE----IVIPEDAISVTVGNDGEVSVRLRGQQDNVVVGQITI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ V++ LE SN N E+ MI Sbjct: 177 TDFVNPGGLEPIGQNLYLPTGASGDPQEGVPGLNGLGNVRQSMLEASNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|312136040|ref|YP_004003378.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] gi|311776091|gb|ADQ05578.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] Length = 255 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 109/258 (42%), Gaps = 21/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV----GAIKNDID 53 M + + ++ + A+N++N T GF+ + F ++ + D Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKTSSPD 60 Query: 54 QKISFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESP-----RGIILTRDG 104 I +++ G + G +I T L+ A+ G+ +F +E P + ++ TR+G Sbjct: 61 NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFTVEVPESEGGQQVLYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + G LV+ G Y VL I + Q + ++G I Q G+ + + + Sbjct: 121 AFTLNSRGELVTIDGFY-VLGQNGR-IVL-QNHGQIRIDDQGNIYQNGRFVDRLRIVDFQ 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 Q + N+ + + + +G+LE SN NS+ EM MI++ + + + Sbjct: 178 DKQLLRKVGNNLFEADAGAQQIP--FSGKILQGYLEGSNVNSVQEMVNMINVLRAYEANQ 235 Query: 225 TLIDENEKSMLEAIRNIA 242 ++++ +AI IA Sbjct: 236 KAFTIQDETLQKAISEIA 253 >gi|203288201|ref|YP_002223216.1| flagellar basal-body rod protein [Borrelia recurrentis A1] gi|201085421|gb|ACH94995.1| flagellar basal-body rod protein [Borrelia recurrentis A1] Length = 265 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T+GF+ I+ +F +++ + + Sbjct: 1 MMRALWTSASGMKAQQYNVDTIANNLSNVNTIGFKKIRAEFEDLIYQTQRRAGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + E G+ T D A+EGD ++ + G TRDG F Sbjct: 61 VTPLGNQVGHGTKVSATHRLFEQGNLQVTNLNTDVAIEGDGFYKVLLSDGTYGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQKGK------VIATM 158 K+ +G LV+ G Y +L I P++ + ++G IS K + + Sbjct: 121 KIDANGHLVTNQG-YILLPE----ISFPEEYIKNSIAISQEGIISVKVNEGLEPIELGQI 175 Query: 159 GLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G N+ G I P + G +K+G LE SN EM Sbjct: 176 EIARFVNPAGLNAIGNNIFKETIGSGEEISGIPGSNGMG-KLKQGMLEMSNVAIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIHTSD-NMLGIANNL 262 >gi|160878401|ref|YP_001557369.1| flagellar basal body rod protein [Clostridium phytofermentans ISDg] gi|160427067|gb|ABX40630.1| flagellar basal body rod protein [Clostridium phytofermentans ISDg] Length = 257 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 109/259 (42%), Gaps = 21/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND------ 51 M G ++RL +++N++N+ TVG++ V F +V+ D Sbjct: 1 MVRGLYTGWTGMENEQKRLDIISNNLANSATVGYKKEGVTNQSFDDVLTLKIRDESENFT 60 Query: 52 ---IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF--ALESPRG---IILTRD 103 I + V G+ Y GS TG DFA+EG +F + G TR Sbjct: 61 DKRIGKMTLGVKLGEVYTDYTQGSLRETGNTFDFAIEGSGFFKMEVLDKDGNSKERYTRA 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G+F + +G +V +G + L +Q+P + +G + G + + + Sbjct: 121 GQFLMDKEGYVVDVNGNH--LMSEGGYLQVPTDASQIVIDLQGNVFADGAQVDKLVVTDF 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + ++++ + + ++D + +++G+ E SN N + EM MI +T+ + + Sbjct: 179 ENYD-YLKKFGESMYEAVDGARVKDTA-AGIRQGYTEQSNVNVVSEMVNMIAITRAYEAN 236 Query: 224 TTLIDENEKSMLEAIRNIA 242 ++ + ++ A +I Sbjct: 237 QKVLQSIDGTLELAANSIG 255 >gi|319409187|emb|CBI82831.1| Flagellar basal-body rod protein flgG [Bartonella schoenbuchensis R1] Length = 264 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQK 55 S +I A + L +A+N++N +T GF+ + +F++++ + N ++Q Sbjct: 3 MRSLSIAATGMAAQQTNLDVIANNLANINTTGFKRARAEFADLMYVADRAVGVPNMLNQA 62 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + G+F+ TG LD A+ G+ WF ++ P G + TR G F Sbjct: 63 IVPEGAMIGMGVRTAAVRKVNMQGAFVQTGNALDLAINGNGWFEVQDPNGNVFYTRSGAF 122 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +++ G + + G I IP + V G + + L Sbjct: 123 NLSETGQIETLDGNLV-----QPAITIPIGSKNITVSPDGTVYYQTDMDPTPVEAGRLNL 177 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + RE +P P +D G + + LE SN + + E+ ++I Sbjct: 178 VNFVNAVGLEAVGDNLFRETPASGAPVPGFPKDDGYG-GIMQAMLESSNVDPVKEITELI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ +N+ Sbjct: 237 AAQRSYEMNSKVIQASDEMAAVVSKNL 263 >gi|288574697|ref|ZP_06393054.1| flagellar basal-body rod protein FlgG [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570438|gb|EFC91995.1| flagellar basal-body rod protein FlgG [Dethiosulfovibrio peptidovorans DSM 11002] Length = 262 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 107/267 (40%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G +A + L ++N++N +TVG++ ++ F++++ I + + Sbjct: 1 MIRSLWTGATGMVAQQTNLDVTSNNLANVNTVGYKKVRTNFADLLYQINREPGSPVEGGT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + GS+ T L+ A+EG+A+F + P G I + +G + Sbjct: 61 TVPTGIQVGLGARVNGTSRITTPGSYEVTDAPLNVAIEGNAYFQVVLPNGDIAYSANGEW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG +V++ G I IP+ + G++ + + I + L Sbjct: 121 QRDGDGQIVTSDGYLL-----EPAIVIPEDGTDITISSTGQVYVSQPGDDEAQEIGQIEL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + RE + P +D T+++G LE SN + EM +I Sbjct: 176 VRFVNPAGLRAIGRNLFRETAASGDPQIGNPGDDGF-PTLQQGILERSNVQVVEEMVNLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ +LE + Sbjct: 235 VAQRAYEANSKTIQTADR-LLEVANGL 260 >gi|296283228|ref|ZP_06861226.1| flagellar basal body rod protein FlgG [Citromicrobium bathyomarinum JL354] Length = 261 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 111/263 (42%), Gaps = 33/263 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 S +I LA + + +++N++N +T GF+ + +F +++ + Sbjct: 1 MRSLSIAGTGMLAQQTNVDVISNNIANMNTTGFKRQRAQFQDLLYQQVSRPGASSAGPEA 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V +G Y E G+ + T D A++G +F ++ P G I TRDG F Sbjct: 61 RAPTGIQIGAGVRTGGVYRIAEQGALVQTDNRFDLAIQGLGYFQVQMPTGEIGYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +++D G LV++ G V++ I IPQ V GE+ + + + + L Sbjct: 121 QLSDQGELVTSQGL--VVEPG---ITIPQGAVDVAVSRTGEVQIKIAGETEMQTVGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + ++ P E G +V +GF+E SN N + E+ +I Sbjct: 176 ATFVNEAGLEAKGDNLFLATAASGEPTIAAPGEPGFG-SVAQGFVEASNVNPVAEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + ++ ++ + Sbjct: 235 TAQRAYEMNSRVVKTADEMLGTT 257 >gi|261253612|ref|ZP_05946185.1| flagellar basal-body rod protein FlgG [Vibrio orientalis CIP 102891] gi|260937003|gb|EEX92992.1| flagellar basal-body rod protein FlgG [Vibrio orientalis CIP 102891] Length = 262 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 110/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVG++ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 V D+G +V++ Y + I IP+ + +G GE+S Q +V+ + Sbjct: 121 TVNDEGVIVTSGAGYALEPE----IAIPEDAQSITIGTDGEVSVRIRGQQDNQVVGQIAT 176 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G N ++ P E + G V++ LE SN N E+ MI Sbjct: 177 VDFVNPGGLEPIGQNLYMATGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|313672411|ref|YP_004050522.1| flagellar basal-body rod protein flgf [Calditerrivibrio nitroreducens DSM 19672] gi|312939167|gb|ADR18359.1| flagellar basal-body rod protein FlgF [Calditerrivibrio nitroreducens DSM 19672] Length = 251 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 113/253 (44%), Gaps = 16/253 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + E+ +S +A+N++N +T G++ F + K + I Sbjct: 1 MLNGLYVAASGMMMQERVVSNIANNLANVNTNGYKKDGFTFQNYIAKPKEFPEDIIRSSL 60 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVT 109 V + YL G+ TG + D A+ + + +F +++P GI TRDG F + Sbjct: 61 YNQTINRTVKLDRNYLDLSEGAVHQTGNKFDLAIGDKNGFFVVDTPWGIRFTRDGAFSIN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 D LV+ SG Y VL + PI I D +F GE+ G + + + + + + Sbjct: 121 SDNELVNGSG-YRVLSRNNQPIVINGNDVVFL--PTGEVMVNGVQVDQLNIATFEDNTRL 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + + + P+E + + +G++E SN N++ EM +MI + F + +I Sbjct: 178 QKVGRN-LFAAVDILPVE-MENPNIMQGYIEGSNVNAVEEMVKMIEANRGFETYQKVIQT 235 Query: 230 NEKSMLEAIRNIA 242 ++ +A + Sbjct: 236 IDQLNEKASNELG 248 >gi|262276415|ref|ZP_06054224.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] gi|262220223|gb|EEY71539.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] Length = 262 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 111/265 (41%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVGF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQRVHTNGNVQTTNNALDLMIEGDGFFQILLPDGNIGYQRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G +V++ YP+ I +P VG GE+S Q+ ++ + Sbjct: 121 TLNDEGVIVTSGAGYPLEPE----IVVPPDAIQVTVGTDGEVSARLRGQQENAILGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ +V++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGSVRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 237 AQRVYEMNSKVISSVDQ-MLSYVNQ 260 >gi|51599025|ref|YP_073213.1| flagellar basal body rod protein FlgG [Borrelia garinii PBi] gi|51573596|gb|AAU07621.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 265 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T GF+ I+ +F +++ +N + Sbjct: 1 MMRALWTAASGMTAQQYNVDTIANNLSNVNTTGFKKIRAEFEDLIYQTQNRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E G ST D A+EGD ++ + P G TRDG F Sbjct: 61 LRPLGNQVGHGTKIAATQRIFEQGKMQSTNLLTDVAIEGDGFYKILLPDGSYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ + LV++ G Y VL I P++ + E+G +S + + + Sbjct: 121 KIDSNRELVTSQG-YKVLPN----IFFPEEYIQNSITISEQGIVSVKIDNSNEPIELGQI 175 Query: 159 GLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + +E +G I P + G+ +++ LE SN + EM Sbjct: 176 EISRFVNPAGLSAIGSNLFKETAGSGQEIAGIPGSEGMGI-LRQSILEMSNVSIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIQTSD-NMLGIANNL 262 >gi|167579489|ref|ZP_02372363.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis TXDOH] Length = 253 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 20/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M + ++ S VA+N++N T GFR F V G+ D Sbjct: 1 MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 ++ S G TG LD A++G W ++ P G TR G V +G L Sbjct: 61 RTYTLSSTPGADFAPGPIERTGNPLDVAIQGPGWLSVMLPDGSEAYTRAGNLHVDQNGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS 166 V+A+ PV+ P+ +P + +G G +S +I + L + D + Sbjct: 121 VTAN-NLPVVGNGG-PLAVPPNSQ-LTIGADGTVSALMPGDPPTAVAMIDQLKLVNPDPA 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++R + G+ P + V V LE SN N + M MI + F T L Sbjct: 178 T--MKRGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKL 235 Query: 227 IDENEKSMLEAIRNI 241 I +++ +A + Sbjct: 236 IQSADQN-EQAANQL 249 >gi|144897832|emb|CAM74696.1| flagellar basal body distal rod protein; FlgG [Magnetospirillum gryphiswaldense MSR-1] Length = 261 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 108/267 (40%), Gaps = 34/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S NI LA + + +++N++N +T + + +FS+++ + S Sbjct: 1 MRSLNIAATGMLAQQTNVEVISNNIANMNTTAYTKRRPEFSDLLYQNLRRVGAASSDAGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y E GS ST LD A++G + + P G TRDG F Sbjct: 61 IVPTGVQLGLGVKTTAVYRITEQGSVQSTDNTLDVAIQGKGYLQIRLPSGDTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 ++++ G +V+ G Y VL I +P ++ G++ S V+ + L Sbjct: 121 QLSEAGQIVTHEG-YTVLPG----ITVPNNAVGISINASGQVMVKVDGSIDQTVVGQLQL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G R ++ + P G T+ +GFLE SN N + E+ +I Sbjct: 176 ANFANEAGLEARGDNLFLETPASGGVLAGNPGSPGYG-TLLQGFLETSNVNVVAEVTNLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ M I + Sbjct: 235 SAQRAYEMNSKVIQTSDEMM-STINQL 260 >gi|206603525|gb|EDZ40005.1| Flagellar basal body rod protein [Leptospirillum sp. Group II '5-way CG'] Length = 261 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 33/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + A + L + +N++N +T GF+ + F +++ + S Sbjct: 1 MFRSLWNAASGMEAQQTSLDVITNNLANVNTTGFKRQRANFQDLMYQTLVPPGEAQSLLG 60 Query: 58 -----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 V SG GSF T LD A++G+ +F + P G TRDG Sbjct: 61 NQSPTGMQVGLGVRSGSVQKIFLQGSFRQTNNPLDLAIQGNGFFQISLPDGRTAYTRDGT 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKV----IATMG 159 F + G LV+ G + PI +P + NV GE+S G+V + + Sbjct: 121 FSIDGQGRLVTQDGL-----PTNPPITVPPNAKSVNVSPAGEVSVMLPGQVQPVRVGQLV 175 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L G R ++ P + +G ++ GFLE SN N E+ M Sbjct: 176 LSQFVNPAGLESRGDNLFMETAASGQPQLSNPGTNGAG-RLQSGFLEASNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSM 234 + + + T I + + Sbjct: 235 VIGQRAYQMDATGIRTVNRML 255 >gi|90408062|ref|ZP_01216233.1| Flagellar basal body rod protein FlgG [Psychromonas sp. CNPT3] gi|90310819|gb|EAS38933.1| Flagellar basal body rod protein FlgG [Psychromonas sp. CNPT3] Length = 262 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 114/267 (42%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++T+++N++N TVGF+ + F +++ N + Sbjct: 1 MHPALWISKTGLDAQQTNVATISNNLANASTVGFKKSRAIFEDLLYQNINQPGANATQNT 60 Query: 58 ------FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + + + G+ ++T LD ++G +F +E P G TR+G+F Sbjct: 61 KLPSGLMIGAGAKVVAVQKNFSQGNALTTKNSLDIMIDGRGFFEIEMPDGSSGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ +DG +V+ Y ++ IQIP +VG +GE+S + +V+ + + Sbjct: 121 QLNEDGIIVTPGSGYALMPQ----IQIPNDALSISVGSEGEVSVRIAGQVENQVVGQINV 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I P D G +++G LE SN N E+ +I Sbjct: 177 NDFVNPSGLEPMGENLYTETGASGAPIQGVPGGDGLGF-LRQGMLETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 236 ESQRVYEMNSKVISAVDEMLSYVSQQL 262 >gi|332994160|gb|AEF04215.1| flagellar basal body rod protein FlgG [Alteromonas sp. SN2] Length = 262 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 116/266 (43%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ V++N++N TVGF+ + F +++ N + S Sbjct: 1 MHPALWISKTGLDAAQTDVAVVSNNLANASTVGFKKDRAIFEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + SG + +S + G+ ++T LD +++G +F + P G +R+G+F Sbjct: 61 ELPSGLMLGSGSKVVSTQKAHTQGNLLTTDNALDMSIQGRGYFEILQPDGTIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D G +V++ + + + IP+ + + + GEIS + +V+ M L Sbjct: 121 SMNDQGQIVTSGAGFLLQPE----VAIPEDAQQITISQDGEISVSIRGQAEPQVLGQMNL 176 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G N + P++ + G+ T+ +G LE SN N E+ +I Sbjct: 177 SDFINPTGLQPIGQNLYVETASSGAPIQGVPGLQGIGTIAQGTLETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + I+ + Sbjct: 237 SQRLYEMNSKVISSVDQMLGQVIQQL 262 >gi|190890363|ref|YP_001976905.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|218516082|ref|ZP_03512922.1| flagellar basal body rod protein FlgG [Rhizobium etli 8C-3] gi|190695642|gb|ACE89727.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] Length = 262 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 104/259 (40%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +F++++ + N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V + G TG +LD AL G +F ++S G + TR G F Sbjct: 61 VVPEGANIGLGVQTSAVRNLHLQGELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 D G LV+ G Y VL I IP + GE+S V+ + L Sbjct: 121 NKNDQGQLVTVDG-YEVLPG----ITIPTGSTELTISRSGEVSVKLPGATDTTVLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E + + P E+ +K+G+LE SN + + E+ ++I Sbjct: 176 ADFVNEAGLQPIGDNLFQETAASGEAVVGNPDEEGF-AYMKQGYLESSNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 235 SAQRAYEMNSKVITTADEM 253 >gi|303248239|ref|ZP_07334502.1| flagellar basal-body rod protein FlgG [Desulfovibrio fructosovorans JJ] gi|302490377|gb|EFL50288.1| flagellar basal-body rod protein FlgG [Desulfovibrio fructosovorans JJ] Length = 260 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 112/263 (42%), Gaps = 30/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S +A++ ++ T+++N++N +TVGF+ + +F +++ + + Sbjct: 1 MMRSLWTATTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTLQVAGTETTGGN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V + G +TG +LD A++G +F ++ + TR G FK Sbjct: 61 RIPTGLQVGLGVKPTTVHKFFTQGDLQNTGNQLDIAIQGQGFFKVDVNGRELYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGLYS 162 + DG++V +SG YP+ S +P + + E G +S G +A + LY+ Sbjct: 121 LNQDGTIV-SSGGYPLQPTFS----VPTDTKTITITENGHLSCLDLNGDTLAETDIPLYT 175 Query: 163 VDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + S TP + +G T+ +G+LE SN + EM +I Sbjct: 176 FINPSGMTAEGRNLYSTTQASGTANEVTPGDQNAG-TLAQGYLEMSNVELVDEMVGLIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + + I + + A+ Sbjct: 235 QRAYEANSKAITTADGMLQTAVN 257 >gi|301168504|emb|CBW28094.1| putative flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 289 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 109/273 (39%), Gaps = 36/273 (13%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-------- 56 + L+ +A ++++ T+A+N++N +T GF+ ++ F E + + +Q + Sbjct: 16 LWVPLSGAIAQQRKVETIANNVANANTPGFKKDQIVFKEYLTQFEKGYEQDLDLPHKEWK 75 Query: 57 ------------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 + V + + G TG LD AL+G + + +P G+ TR G Sbjct: 76 PEDFYRSYGAEHAKVKVDGSFTDFQQGQTTPTGNPLDVALKGKGFIEVLTPNGVRYTRKG 135 Query: 105 RFKVTDDGSLVSASGKYPVLDMASV---------------PIQIPQKDEIFNVGEKGEIS 149 + G LV+ G PVL IQ+PQ + +GE+S Sbjct: 136 NLSINPAGLLVT-DGGNPVLSKIDPALLLAGENLPSPQERTIQLPQNSGRLAINFQGELS 194 Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 I+ + + + + NS + V +GF+E SN N++ E Sbjct: 195 NSNGKISDLSIVEFNDIHALKKEGNSFYINEKFENISTAENKTAVYQGFIEQSNVNAIQE 254 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++I + F SI +I + + + IA Sbjct: 255 MSELIKANRNFESIQRVIKTYDTISGKGVNEIA 287 >gi|302338303|ref|YP_003803509.1| flagellar basal-body rod protein FlgF [Spirochaeta smaragdinae DSM 11293] gi|301635488|gb|ADK80915.1| flagellar basal-body rod protein FlgF [Spirochaeta smaragdinae DSM 11293] Length = 282 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 62/282 (21%), Positives = 118/282 (41%), Gaps = 46/282 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDID---- 53 M G + + R+ +++N++N D VG++ + F +++ ND Sbjct: 1 MVRGIYTGASGMVDQMHRMDAISNNLANVDLVGYKRDQSVSKAFPQMLIRRMNDDGVYSF 60 Query: 54 --------QKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILT 101 + + +G EY G+ TG + D AL+G +FA+++PRG T Sbjct: 61 PFGSADTAPVVGMIGTGVEYNESFTVFSQGALKETGNDFDLALDGKGFFAVDTPRGERYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------- 152 R+G F +T +G L + G+ PVL + I+I + + F V E+G++ Q G Sbjct: 121 RNGTFVLTKEGILTTKEGE-PVLGENGI-IRIKKNN--FVVDERGQVWQNGSYDGDPQRL 176 Query: 153 -----------KVIATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSGVTVKRGF 198 +++ T+ + + + +S + S V +GF Sbjct: 177 VSKEENEWENLELVDTLKVVDFRRDRYLKKEGDSLYIAPEEAGASNQVALGSETKVVQGF 236 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 LE SN NS+ EM +MI + + + + + ++ I + Sbjct: 237 LEGSNVNSVTEMVRMIEVNRAYEANQKAMQTHDALTGRLIND 278 >gi|149911700|ref|ZP_01900308.1| Flagellar basal body rod protein FlgG [Moritella sp. PE36] gi|149805230|gb|EDM65247.1| Flagellar basal body rod protein FlgG [Moritella sp. PE36] Length = 262 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +ST+++N++N TVGF+ + F +++ N + S Sbjct: 1 MNPALWISKTGLEAQQANISTISNNLANASTVGFKKERAIFEDLLYQAINQPGGQSSQNT 60 Query: 58 ------FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V SG + G+ ++T LD + G +F +E P G TR+G+F Sbjct: 61 KLPSGLMVGSGARVVATQKDHSQGNMLTTDNSLDLMVSGRGFFEIEMPDGTTSYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D+G +V+ YP+ IQIP + V E GE+S + + + + Sbjct: 121 TLNDEGIIVTPGSGYPLQPQ----IQIPADAQTITVSEDGEVSVSLPGQTNNQTVGQINI 176 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G + I P++ L + +G +E SN N E+ +I Sbjct: 177 SDFVNPGGLQPIGQNMYIQTGASGDPVQGLPSNEGLGKLVQGAIETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML I Sbjct: 237 SQRVYEMNSKVISAVDE-MLSYINQ 260 >gi|283953936|ref|ZP_06371465.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] gi|283794541|gb|EFC33281.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] Length = 262 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 115/266 (43%), Gaps = 32/266 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--- 58 S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATTL 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGRF 106 V G + G+ ST T+ LD A+ G+ +F ++ P G I TR+G+F Sbjct: 61 SPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++G++V++ G Y +L + IP+ NV G +S Q+ I + L Sbjct: 121 TKDNEGNIVNSDG-YRLLPE----MTIPEGAIAINVATDGTVSVMLPGEQQETQIGQVEL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G ++ + P+ ++G T++ GF+E SN + EM +I Sbjct: 176 VQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML + + Sbjct: 236 GQRAYEAGSKAITTSDD-MLGIVNQL 260 >gi|260767925|ref|ZP_05876859.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260615955|gb|EEX41140.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315179628|gb|ADT86542.1| flagellar basal-body rod protein FlgG [Vibrio furnissii NCTC 11218] Length = 261 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +TG +LD A+ G +F +E+ G I+ +R+G+F Sbjct: 61 ELPTGVQLGSGVRVVGTQKVFTQGNTQNTGQDLDLAVMGQGFFQIENSDGQIMYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 V +G +V++ G IQ+P +VG G ++ + + + L Sbjct: 121 HVNSEGLMVNSQGL-----PLQPQIQVPDDAISLSVGVDGTVTITTAADSTPQELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + RE ED G ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEALGGNLFRETEASGAADELIAGEDGVG-SIKQGVLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 235 TTQRAYEMNAKVVSAADDML 254 >gi|114567879|ref|YP_755033.1| flagellar basal-body rod protein (flgG-2) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338814|gb|ABI69662.1| flagellar basal-body rod protein (flgG-2) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 246 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 114/251 (45%), Gaps = 26/251 (10%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND----------------I 52 + R VA+N++N +T GF+ F +++ + + I Sbjct: 1 MMLQMARQDVVANNLANVNTSGFKKNTAVAKAFPDMLISRLGECKEDKQGQLKVQSPVVI 60 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + + + Y + + T + D A+ G +F +++P G TR G FK+ +G Sbjct: 61 GRLGTGASISGIYTDFDNNNLKKTDSPCDLAITGAGYFVVQTPEGQRFTRCGEFKINSEG 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 L + SG YPVLD PI I + F + E+G I+ G+ I + + + + Q R Sbjct: 121 ILTTNSG-YPVLDSNDSPITI---EGEFLIDEQGNINVDGENITRLKIVNFNDLQILERL 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ++ ++ P +E + +G++E SN N++ EM +I + + + S+ ++ ++ Sbjct: 177 GDNLLNSPEEPYVMERPE---MLQGYIEQSNVNAVKEMVTLISVVRAYESLQKMVQAEDE 233 Query: 233 SMLEAIRNIAS 243 M +AI + S Sbjct: 234 IMGQAIDKVGS 244 >gi|114046840|ref|YP_737390.1| flagellar basal body rod protein FlgG [Shewanella sp. MR-7] gi|113888282|gb|ABI42333.1| flagellar basal-body rod protein FlgG [Shewanella sp. MR-7] Length = 262 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 109/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + ++ +++N++N TVG++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP+ V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVLQPA----ITIPEDATSITVSAEGEVSVKTPGAAENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLAYVNQNL 262 >gi|103488389|ref|YP_617950.1| flagellar basal body rod protein FlgG [Sphingopyxis alaskensis RB2256] gi|98978466|gb|ABF54617.1| Flagellar basal-body rod FlgG [Sphingopyxis alaskensis RB2256] Length = 261 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 29/262 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-------- 55 + ++ A R+ +A+N++N +T GF+ + F + + Sbjct: 5 ALHVARTGLDAQSFRMQVIANNLANVNTTGFKRDRASFETLSYQLMTQAGAPSTAENRYA 64 Query: 56 -----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 + VA G+F +TG LD A++G +F +E P G I TR G F Sbjct: 65 TGLNLGTGVALNGTARIDTQGTFQTTGNGLDVAIDGAGYFQVELPDGRIGYTRAGNFGRA 124 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVD 164 DG++V+ GK + IQIP+ ++G G +S + + + Sbjct: 125 PDGTIVTPDGK-----PLTPAIQIPEDAGNVSIGLDGTVSATAADGTALELGRIEIARFS 179 Query: 165 MSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G + + PL +G T++ G LE SN N + E+ MI + Sbjct: 180 NPAGLQAIGGNMLVETQASGAPLVGGAGEEGRGTLRGGMLEGSNVNVVEELVDMIETQRA 239 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + +I ++ M A + + Sbjct: 240 YEVNSKMISATDEMMKNASQTL 261 >gi|124516715|gb|EAY58223.1| Flagellar basal body rod protein FlgG [Leptospirillum rubarum] Length = 261 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 99/261 (37%), Gaps = 33/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + A + L + +N++N +T GF+ + F +++ + S Sbjct: 1 MFRSLWNAASGMEAQQTSLDVITNNLANVNTTGFKRQRANFQDLMYQTLVPPGEAQSLLG 60 Query: 58 -----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 V SG GSF T LD A++G+ +F + P G TRDG Sbjct: 61 NQSPTGMQVGLGVRSGSVQKIFLQGSFRQTNNPLDLAIQGNGFFQISLPDGRTAYTRDGT 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKV----IATMG 159 F + G LV+ G + PI +P + NV GE+S G+V + + Sbjct: 121 FSIDGQGRLVTQDGL-----PTNPPITVPPNAKSVNVSPAGEVSVMLPGQVQPVRVGQLV 175 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L G R N+ P + +G ++ GFLE SN N E+ M Sbjct: 176 LSQFVNPAGLESRGNNLFMETAASGQPQLSNPGTNGTG-RLQSGFLEASNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSM 234 + + + T I + + Sbjct: 235 VIGQRAYQMDATGIRTVNRML 255 >gi|323492336|ref|ZP_08097489.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] gi|323313383|gb|EGA66494.1| flagellar basal body rod protein FlgG [Vibrio brasiliensis LMG 20546] Length = 261 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 107/260 (41%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T + D A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTSQQYDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 V +G +V++ G IQIP +VG G ++ + + + L Sbjct: 121 HVNSEGLMVNSQGL-----PLEPQIQIPDNALSLSVGVDGTVTATTVDSSTPEQLGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + RE T ED G+ +K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLFRETEASGQADELTAGEDGVGI-IKQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 235 TTQRAYEMNAKVVSAADDML 254 >gi|262276416|ref|ZP_06054225.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] gi|262220224|gb|EEY71540.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] Length = 249 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 14/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR ++ + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQDMQALQLRANNLANASTTGFRAD-LEQARSMQAYGEGLPTRV-FNM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + S GS I+TG ELD A++GD W A+ G TR G KV G L + G Sbjct: 59 TERPGYSFAQGSTITTGRELDVAIKGDGWLAVLDGTGQEGYTRVGNLKVDQTGMLQNGHG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + +L PI +P +G G +S + + + L ++ + Sbjct: 119 -HLILGEGGAPIFLPLPVSKIEIGSDGTVSVLPQGAPPEAMEEVDRIKLVR-PNNEELFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 +N P P T E +GV++ G LE SN N + EM +I L + F L+ E Sbjct: 177 DKNGVFKPVNPGTIFEADAGVSLLTGALEGSNVNPINEMTGLIDLQRHFEMQVKLMKTAE 236 Query: 232 KSMLEAIRNI 241 + M +A ++ Sbjct: 237 E-MDQASNSL 245 >gi|117919774|ref|YP_868966.1| flagellar basal body rod protein FlgG [Shewanella sp. ANA-3] gi|117612106|gb|ABK47560.1| flagellar basal-body rod protein FlgG [Shewanella sp. ANA-3] Length = 262 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 109/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + ++ +++N++N TVG++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP+ V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVLQPA----ITIPEDATSITVSAEGEVSVKTPGAAENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLAYVNQNL 262 >gi|222530299|ref|YP_002574181.1| flagellar basal body rod protein [Caldicellulosiruptor bescii DSM 6725] gi|222457146|gb|ACM61408.1| flagellar basal body rod protein [Caldicellulosiruptor bescii DSM 6725] Length = 255 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 103/258 (39%), Gaps = 21/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----------EVVGAIK 49 M + + ++ + A+N++N T GF+ + + V + Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVANVSTTGFKRDVAQVESFRNMLVYRIYDKVSSPD 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-----IILTRDG 104 N I + G +I T L+ A++GD +F +E P I TR+G Sbjct: 61 NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIKGDGFFTIEVPENQGAQQIFYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + G LV+ +G Y VL I + Q + E+G + Q G+++ + + Sbjct: 121 AFTLNSRGELVTLNGFY-VLGQNGR-IVL-QNGGQVRIDEQGNVYQNGRIVDRLRVVDFQ 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + N+ + + V +G+LE SN NS+ EM MI + + + + Sbjct: 178 DKSLLRKVGNNLFEADAAVQQIP--FSGKVLQGYLEGSNVNSVQEMVNMISVLRAYEANQ 235 Query: 225 TLIDENEKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 236 KAFVIQDETLQKAVNEIA 253 >gi|114562344|ref|YP_749857.1| flagellar basal body rod protein FlgG [Shewanella frigidimarina NCIMB 400] gi|114333637|gb|ABI71019.1| flagellar basal-body rod protein FlgG [Shewanella frigidimarina NCIMB 400] Length = 262 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ +++N++N TVGF+ + F +++ N S Sbjct: 1 MHPALWISKTGVDAQQTNIAVISNNVANASTVGFKKSRAVFEDLLYQTVNQAGGISSDNS 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGSGFFEVQMPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 + D G +V+ Y V PI IP V GE+S + +VI + + Sbjct: 121 SLDDTGQIVTPGSGYVV----QPPITIPDDSTSITVSASGEVSVQTPGTAASQVIGQLTM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G ++++G LE SN N E+ +I Sbjct: 177 TDFINPAGLDPLGQNLYTETGASGTPIQGTASLDGLG-SIRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML I Sbjct: 236 QGQRIYEMNSKVISAVDQ-MLSYINQ 260 >gi|312882657|ref|ZP_07742394.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] gi|309369618|gb|EFP97133.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] Length = 262 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVGF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 V D+G +V++ Y + I IP+ VG GE+S Q +V+ + Sbjct: 121 TVNDEGIIVTSGAGYTLEPE----IAIPEDAISITVGTDGEVSVRVRGQQNNQVVGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G V++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDVRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|85058013|ref|YP_453715.1| flagellar basal body rod protein FlgG [Sodalis glossinidius str. 'morsitans'] gi|84778533|dbj|BAE73310.1| flagellar basal-body rod protein FlgG [Sodalis glossinidius str. 'morsitans'] Length = 260 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I A + + +++N++N T+GF+ + F +++ K S Sbjct: 1 MMRSLMIAKTGLEAQQTNMDVISNNIANVSTMGFKRQQAVFEDLLYQTVRQPGAKSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ G +TG D A+EG + + P G TRDG Sbjct: 61 TIPSGLQLGTGVRPVATTRIHLQGGLTNTGNPTDVAIEGSGFLQVLMPDGTNAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++SG YP+ + IP + + G +S + + + + L Sbjct: 121 QRDQYGQLVTSSG-YPIQPA----VMIPNGASNLTISKDGLVSVALPGQTEPQEVGQLNL 175 Query: 161 YSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G EN P+E+ G+ +K+ FLE+SN N E+ MI Sbjct: 176 ATFINDAGLQSLGENLYYETPSSGAPMENKPGMNGAGALKQQFLENSNVNVAQELITMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + I +++ + + Sbjct: 236 AQRAYELNSKAISTSDQMLQRLAQ 259 >gi|120598233|ref|YP_962807.1| flagellar basal body rod protein FlgF [Shewanella sp. W3-18-1] gi|120558326|gb|ABM24253.1| flagellar basal-body rod protein FlgF [Shewanella sp. W3-18-1] Length = 247 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 15/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ +N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYISMSGAKQNMNELALRGNNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 IETPSANFRSGPIKTTGRDLDVAIKGDGWFAVQAKDGAEAYTRSGSLSFDATGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P + + + G IS + + + + L + +Q + Sbjct: 119 N-PVMGDAG-PIVLPLPIDKVTISQDGIISVRPQGATAEVIEEVGRLKLVNPGNAQ--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V V+ G +E SN N + EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLVSGNDAPADPNVAVESGAVEGSNVNPVDEMVSLIELQRQFEMQVKMMKTAE 234 Query: 232 K 232 + Sbjct: 235 E 235 >gi|167034941|ref|YP_001670172.1| flagellar basal body rod protein FlgG [Pseudomonas putida GB-1] gi|166861429|gb|ABY99836.1| flagellar basal-body rod protein FlgG [Pseudomonas putida GB-1] Length = 261 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 107/267 (40%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+ +++N++N T GF+ + +F++++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V S GS +T LD A+ G +F + P G + TRDG F Sbjct: 61 ELPSGLQVGTGVRIVGTQKSFVAGSLQTTENPLDMAVNGRGFFQILQPDGTVSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + DG +V+A+G + +P + F VG+ G +S +VI + Sbjct: 121 HLNSDGQIVTANGY-----ALEPAVVVPNDAQTFTVGQDGTVSITTAGNPAAQVIGNIQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ TP + G T ++ LE+SN +++ E+ MI Sbjct: 176 ADFINPAGLQAIGDNLFLETAASGAPQVGTPGLNGFGTT-QQQTLENSNVSTVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 TTQRAYEMNSKVISTADQMLSFVTQQL 261 >gi|76808961|ref|YP_331880.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 1710b] gi|126452329|ref|YP_001064565.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 1106a] gi|167736704|ref|ZP_02409478.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 14] gi|167822319|ref|ZP_02453790.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 9] gi|167909128|ref|ZP_02496219.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 112] gi|226199728|ref|ZP_03795279.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei Pakistan 9] gi|242314788|ref|ZP_04813804.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1106b] gi|254196477|ref|ZP_04902901.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei S13] gi|254260132|ref|ZP_04951186.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1710a] gi|254295815|ref|ZP_04963272.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 406e] gi|14091669|gb|AAK53815.1|AF370881_1 flagellar basal-body rod protein [Burkholderia pseudomallei] gi|76578414|gb|ABA47889.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1710b] gi|126225971|gb|ABN89511.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1106a] gi|157805973|gb|EDO83143.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 406e] gi|169653220|gb|EDS85913.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei S13] gi|225928079|gb|EEH24115.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei Pakistan 9] gi|242138027|gb|EES24429.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1106b] gi|254218821|gb|EET08205.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1710a] Length = 253 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 20/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M + ++ S VA+N++N T GFR F V G+ D Sbjct: 1 MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 ++ S G TG LD A++G W ++ P G TR G V +G L Sbjct: 61 RTYTLSSTPGADFAPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS 166 V+A+ PV+ P+ +P + +G G +S +I + L + D + Sbjct: 121 VTAN-NLPVVGNGG-PLAVPPNAQ-LTIGADGTVSALMPGDPPTAVAMIDRLKLVNPDPA 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++R + G+ P + V V LE SN N + M MI + F T L Sbjct: 178 T--MKRGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKL 235 Query: 227 IDENEKSMLEAIRNI 241 I +++ +A + Sbjct: 236 IQSADQN-EQAANQL 249 >gi|238927617|ref|ZP_04659377.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] gi|238884542|gb|EEQ48180.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] Length = 264 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++ VA N++N +T G + ++ +F ++V + + Sbjct: 1 MMRALWSAASGMKAQQSQMDVVAHNIANVNTYGGKKVRAEFQDLVYQTLREAGARNGADS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 G+ +T D ++G+ +F + P G TRDG + Sbjct: 61 QYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTTAYTRDGTW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K+ D +V++ G L + I + + G +S + + + L Sbjct: 121 KLDSDRRMVTSDGY---LLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEAGQITL 177 Query: 161 YSVDMSQGFVRRE------NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + I P ED +G T+ +G LE SN + EM MI Sbjct: 178 ARFVNPAGLTAVGKNLFVVSDASGEAIESNPGEDGAG-TLTQGTLEMSNVQIVEEMVNMI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + S + I SMLE + Sbjct: 237 VSQRAYESNSKAI-TTSDSMLEIANQL 262 >gi|311105937|ref|YP_003978790.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans A8] gi|310760626|gb|ADP16075.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans A8] Length = 261 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 101/266 (37%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + + +++N++N T GF+ + F +++ ++ Sbjct: 1 MMRSLWIAKTGLEGQQTSMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + E G+ +TG+E+D A+ G + +E P G TRDG Sbjct: 61 QLPSGLQLGTGARVAATERIHTAGNLNNTGSEMDIAINGRGFLQIELPDGTQAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------GKVIATMG 159 + +G L + SG + P+ IP ++G G +S I + Sbjct: 121 QRDQNGQLTTVSGY-----VIQPPMNIPDNALSISIGNDGIVSVTQPGAAGINVQIGQLQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + + G + E P P D +G ++ + ++E SN N E+ M Sbjct: 176 IATFINPTGLQSIGENLYLETDASGPANLLQPGVDGAG-SIMQKYVETSNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + +++ + + Sbjct: 235 ITTQRAYEMNSKAVKTSDEMLARLTQ 260 >gi|149188068|ref|ZP_01866363.1| polar flagellar FlgG [Vibrio shilonii AK1] gi|148838056|gb|EDL54998.1| polar flagellar FlgG [Vibrio shilonii AK1] Length = 262 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N T+G++ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKIHTPGNAQTTTNSLDMMIEGDGFFQVLMPDGNIGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G++V++ Y + I IP+ VG GE+S Q +V+ + Sbjct: 121 TLNDEGTIVTSGSGYALEPE----IAIPEDAISITVGTDGEVSVRVRGQQDNQVVGNITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ +++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLYLPTGASGDPNEGVPGLDGFGQIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +K M A + + Sbjct: 237 AQRVYEMNSKVISSVDKMMSFANQQL 262 >gi|42522134|ref|NP_967514.1| flagellar basal-body rod protein FlgG [Bdellovibrio bacteriovorus HD100] gi|39574665|emb|CAE78507.1| flagellar basal-body rod protein FlgG [Bdellovibrio bacteriovorus HD100] Length = 261 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 99/267 (37%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S N A + + +A+N++N T GF+ + +F +++ + + Sbjct: 1 MLKSLNTAATGMAAQQTNMDVIANNIANVSTAGFKRSRAEFEDLMYQTQKEPGTASGLNA 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + G T LD +EG +F + + G TRDG F Sbjct: 61 YSPNGVQVGLGVRTAGVQKDFAGGQAQITKNPLDLQIEGSGFFQVLTADGETAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K +G LV +G I +P V GE+ + + I + + Sbjct: 121 KKDPNGRLVDKNGN-----TLQPEITVPANVSGIEVAPTGEVRVITGLNDVPQTIGQIDV 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + I P + +G + +G LE SN N + EM MI Sbjct: 176 VNFVNPAGLKAMGKNLFTQTPSSGQAIASRPGLNGTGY-LAQGQLESSNVNIVDEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ +++ ML+AI N+ Sbjct: 235 TAQRAMETNSKVMQASDQ-MLQAINNL 260 >gi|127512281|ref|YP_001093478.1| flagellar basal body rod protein FlgG [Shewanella loihica PV-4] gi|126637576|gb|ABO23219.1| flagellar basal-body rod protein FlgG [Shewanella loihica PV-4] Length = 262 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +++N++N TVG++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D G +V+ Y + I IP V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVLQPA----ITIPDDATSITVSAEGEVSVKTPGAAENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPMGQNLYLETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 236 ESQRIYEMNSKVISAVDQ-MLSYVNQ 260 >gi|289208116|ref|YP_003460182.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. K90mix] gi|288943747|gb|ADC71446.1| flagellar basal-body rod protein FlgG [Thioalkalivibrio sp. K90mix] Length = 262 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 110/268 (41%), Gaps = 32/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + I A R+STV++N++N +T GF+ + F +++ GA Sbjct: 1 MNQALWIAKTGLDAQHTRMSTVSNNLANVNTTGFKKDRAVFEDLIYQTVRQPGAQATQDQ 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S + G + G+ T LD A+EG +F + P G I TRDG F Sbjct: 61 QLPSGLQIGTGVRAVSTEKMFTQGNLQQTDNSLDVAIEGRGFFQVLMPNGDIGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ DG +V ++G YP+ + +P + +G+ G ++ + + + L Sbjct: 121 QLNADGEVVMSNG-YPLQPG----LFVPPDTQSLAIGKDGTVTAQIPGQAEPVELGNIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E + P + +G T+ +G LE SN N E+ MI Sbjct: 176 ADFVNPAGLQAIGENLFQETAASGVAQQAQPGLNGTG-TLVQGSLETSNVNIAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + I ++S+ + I Sbjct: 235 ETQRAYEVNSKAISAADQSLQFVNQTIG 262 >gi|209964690|ref|YP_002297605.1| flagellar basal body rod protein FlgG [Rhodospirillum centenum SW] gi|209958156|gb|ACI98792.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] Length = 261 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 33/262 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S +IG LA + + +++N++N T GF+ + +F +++ + S Sbjct: 1 MRSLSIGATGMLAQQLNVEVISNNIANMTTTGFKRQRAEFQDLLYQNMRRVGSTSSDAGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y E G+ TG LD A+ G +F +E P G TR G F Sbjct: 61 VVPSGVQIGAGVKTAAVYRINEQGNISVTGNALDLAINGQGYFQVELPDGQTAYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 ++ +G++V+A G + +P+ V GE+ + I + L Sbjct: 121 QLNAEGTIVTADGY-----QLQPGLVVPENAVDITVNPNGEVLVKLDGQTQPANIGQIQL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ + + I P G +++ LE SN N + E+ +I Sbjct: 176 ATFPNPAGLEAIGDNLLLESPASGNIIAGNPGAPGFGRVIQQ-ALETSNVNIVSEITNLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLE 236 + + + +I +++ M Sbjct: 235 TAQRAYEMNSRVISTSDQMMQS 256 >gi|157373205|ref|YP_001471805.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] gi|157315579|gb|ABV34677.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] Length = 261 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 117/265 (44%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ + ++ Sbjct: 1 MQSALWVSKTGLTAQDVKMTTIANNLANVNTTGFKRDRVAFNDLFYQTQRQPGGQVDELN 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + + G ++T +LD A+EG +F +E G + +RDG+F Sbjct: 61 ELPSGLQLGTGTRVVGTQKIFTSGDMLTTNQQLDLAIEGQGFFQIEEANGDLAYSRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 DG +V++ G V I+IP+ + G ++ + + + + L Sbjct: 121 YRNSDGLMVTSQGLPLV-----PNIEIPEDALTITIATDGIVTAQISGQAEAQELGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G R ++ +E ++G +++G LE +N N + EM +MI Sbjct: 176 VNFTNPTGLEARGDNLYRETGASGAAIEGVAGDQAIGQLRQGALEGANVNVVEEMVEMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ ML+ + Sbjct: 236 TQRAYEMNAKVVSASDD-MLKFLNQ 259 >gi|160876201|ref|YP_001555517.1| flagellar basal body rod protein FlgG [Shewanella baltica OS195] gi|160861723|gb|ABX50257.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS195] gi|315268391|gb|ADT95244.1| flagellar basal-body rod protein FlgG [Shewanella baltica OS678] Length = 262 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 109/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ +++N++N TVG++ + F +++ N + Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYLLQPA----ITIPDNATSITVSAEGEVSVKTPGTAENQVVGQLTM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLSYVTQNL 262 >gi|113969608|ref|YP_733401.1| flagellar basal body rod protein FlgG [Shewanella sp. MR-4] gi|113884292|gb|ABI38344.1| flagellar basal-body rod protein FlgG [Shewanella sp. MR-4] Length = 262 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 108/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + ++ +++N++N TVG++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVLQPA----ITIPDDATSITVSAEGEVSVKTPGTAENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLAYVNQNL 262 >gi|117619599|ref|YP_857341.1| flagellar basal body rod protein FlgG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561006|gb|ABK37954.1| flagellar basal-body rod protein FlgG [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 262 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 112/265 (42%), Gaps = 29/265 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S ++N++N TVG++ + F +++ N + S Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F Sbjct: 61 ERPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G++V+ YP+ IQIP+ + +GE G++S + +V+ + Sbjct: 121 TLNSEGTIVTPGNGYPLQPE----IQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINT 176 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G + P++ ++G +K+G LE SN N E+ +I Sbjct: 177 TDFVNASGLQPMGENMFVETQSSGAPVQGVAGTDGLGVIKQGMLETSNVNVTEELVNLIQ 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + ++ + M I+ Sbjct: 237 AQRVYEMNSKVLSAVDGMMSFLIQR 261 >gi|153001471|ref|YP_001367152.1| flagellar basal body rod protein FlgF [Shewanella baltica OS185] gi|160876202|ref|YP_001555518.1| flagellar basal body rod protein FlgF [Shewanella baltica OS195] gi|151366089|gb|ABS09089.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS185] gi|160861724|gb|ABX50258.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS195] gi|315268392|gb|ADT95245.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS678] Length = 247 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYVAMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 TESPSANFRSGPIKTTGRDLDVAIKGDGWFAVQAKDGSEAYTRAGSLSFDSTGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P E ++ + G IS + + + + L + ++ + Sbjct: 119 N-PVMGDAG-PIVLPLPIEKVSISQDGIISVRPQGATAEVVEEVGRLKLVNPGNAE--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V V+ G +E SN N + EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLVSGNIAPADPSVGVESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|33592481|ref|NP_880125.1| flagellar basal body rod protein FlgG [Bordetella pertussis Tohama I] gi|33572127|emb|CAE41669.1| flagellar basal-body rod protein FlgG [Bordetella pertussis Tohama I] gi|332381898|gb|AEE66745.1| flagellar basal body rod protein FlgG [Bordetella pertussis CS] Length = 261 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 98/266 (36%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + + +++N++N T GF+ + F +++ ++ Sbjct: 1 MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKWGRAVFQDLMYQTLRQPGAQVGDAN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V G+ +TG E+D A++G + +E P G TRDG Sbjct: 61 QLPSGLQLGMGVQVAATQRVFSQGNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-------KGKVIATMG 159 +V +G L +A G + PI +P +G+ G +S I + Sbjct: 121 QVDQNGQLTTAGGY-----VIQPPINVPDNALSLTIGKDGTVSVTQPGAAGTNVQIGQLQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + + G + E P P D +G +++ ++E SN N E+ M Sbjct: 176 VATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQ-YVETSNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + +++ + + Sbjct: 235 ITTQRAYEMNSKAVKTSDEMLARLTQ 260 >gi|120598234|ref|YP_962808.1| flagellar basal body rod protein FlgG [Shewanella sp. W3-18-1] gi|120558327|gb|ABM24254.1| flagellar basal-body rod protein FlgG [Shewanella sp. W3-18-1] Length = 262 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 109/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + ++ +++N++N TVG++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEVQLPDGTTAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP+ V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVLQPA----ITIPEDATSITVSAEGEVSVKTAGAAENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLAYVNQNL 262 >gi|258622490|ref|ZP_05717512.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM573] gi|258625232|ref|ZP_05720144.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM603] gi|258582479|gb|EEW07316.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM603] gi|258585190|gb|EEW09917.1| Putative flagellar basal-body rod protein flgG [Vibrio mimicus VM573] Length = 261 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +T GF+ +V F ++ I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTAGFKRDRVVFEDLFYNIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T ELD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPTGVQLGSGVRVVGTQKVFTQGNAQNTAQELDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 V +G +V++ G IQIP ++G G +S + + + L Sbjct: 121 HVNSEGLMVNSQGL-----PLEPQIQIPDNVVSLSIGVDGTVSATTAGDPAPQQLGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + RE +D +G ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLFRETDASGLAEELVAGQDGTG-SIKQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 235 TTQRAYEMNAKVVSATDDML 254 >gi|113884291|gb|ABI38343.1| flagellar basal-body rod protein FlgF [Shewanella sp. MR-4] gi|113888281|gb|ABI42332.1| flagellar basal-body rod protein FlgF [Shewanella sp. MR-7] Length = 252 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 15/238 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 I ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 10 LYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPSRV-FAMVETP 67 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 + G +TG +LD A++GD WFA+++ G TR G G L + G PV Sbjct: 68 SANFRAGPIKTTGRDLDVAIKGDGWFAVQAKDGSEAYTRSGSLSFDSTGLLHNDRGN-PV 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVRRENS 175 + A PI +P E + + G IS + + + + L + +Q + R Sbjct: 127 MGDAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVIEEVGRLKLVNPGNAQ--MMRGED 183 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ + P V V+ G +E SN N + EM +I L ++F ++ E++ Sbjct: 184 GLFRLVSGDPAPADPNVFVESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEEN 241 >gi|53717915|ref|YP_106901.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei K96243] gi|53724566|ref|YP_104799.1| flagellar basal body rod protein FlgF [Burkholderia mallei ATCC 23344] gi|67641539|ref|ZP_00440316.1| flagellar basal-body rod protein FlgF [Burkholderia mallei GB8 horse 4] gi|121600078|ref|YP_994292.1| flagellar basal body rod protein FlgF [Burkholderia mallei SAVP1] gi|124385734|ref|YP_001028059.1| flagellar basal body rod protein FlgF [Burkholderia mallei NCTC 10229] gi|126438677|ref|YP_001057323.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 668] gi|126449756|ref|YP_001082866.1| flagellar basal body rod protein FlgF [Burkholderia mallei NCTC 10247] gi|134283591|ref|ZP_01770290.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 305] gi|167001538|ref|ZP_02267333.1| flagellar basal-body rod protein FlgF [Burkholderia mallei PRL-20] gi|167717661|ref|ZP_02400897.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei DM98] gi|167813803|ref|ZP_02445483.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 91] gi|167843909|ref|ZP_02469417.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei B7210] gi|167892411|ref|ZP_02479813.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei 7894] gi|167900909|ref|ZP_02488114.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei NCTC 13177] gi|167917165|ref|ZP_02504256.1| flagellar basal body rod protein FlgF [Burkholderia pseudomallei BCC215] gi|217425035|ref|ZP_03456531.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 576] gi|237810462|ref|YP_002894913.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei MSHR346] gi|254174652|ref|ZP_04881313.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC 10399] gi|254182139|ref|ZP_04888736.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1655] gi|254188069|ref|ZP_04894581.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei Pasteur 52237] gi|254201897|ref|ZP_04908261.1| flagellar basal-body rod protein FlgF [Burkholderia mallei FMH] gi|254207231|ref|ZP_04913582.1| flagellar basal-body rod protein FlgF [Burkholderia mallei JHU] gi|254359733|ref|ZP_04976004.1| flagellar basal-body rod protein FlgF [Burkholderia mallei 2002721280] gi|52208329|emb|CAH34262.1| flagellar basal-body rod protein [Burkholderia pseudomallei K96243] gi|52427989|gb|AAU48582.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC 23344] gi|121228888|gb|ABM51406.1| flagellar basal-body rod protein FlgF [Burkholderia mallei SAVP1] gi|124293754|gb|ABN03023.1| flagellar basal-body rod protein FlgF [Burkholderia mallei NCTC 10229] gi|126218170|gb|ABN81676.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 668] gi|126242626|gb|ABO05719.1| flagellar basal-body rod protein FlgF [Burkholderia mallei NCTC 10247] gi|134245000|gb|EBA45095.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 305] gi|147747791|gb|EDK54867.1| flagellar basal-body rod protein FlgF [Burkholderia mallei FMH] gi|147752773|gb|EDK59839.1| flagellar basal-body rod protein FlgF [Burkholderia mallei JHU] gi|148028947|gb|EDK86879.1| flagellar basal-body rod protein FlgF [Burkholderia mallei 2002721280] gi|157935749|gb|EDO91419.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei Pasteur 52237] gi|160695697|gb|EDP85667.1| flagellar basal-body rod protein FlgF [Burkholderia mallei ATCC 10399] gi|184212677|gb|EDU09720.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1655] gi|217392055|gb|EEC32081.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 576] gi|237502787|gb|ACQ95105.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei MSHR346] gi|238522490|gb|EEP85934.1| flagellar basal-body rod protein FlgF [Burkholderia mallei GB8 horse 4] gi|243062739|gb|EES44925.1| flagellar basal-body rod protein FlgF [Burkholderia mallei PRL-20] Length = 253 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 20/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M + ++ S VA+N++N T GFR F V G+ D Sbjct: 1 MDRLIYTAMTGATQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFEDGSGNVDPATT 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 ++ S G TG LD A++G W ++ P G TR G V +G L Sbjct: 61 RTYTLSSTPGADFAPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS 166 V+A+ PV+ P+ +P + +G G +S +I + L + D + Sbjct: 121 VTAN-NLPVVGNGG-PLAVPPNAQ-LTIGADGTVSALMPGDPPTAVAMIDQLKLVNPDPA 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++R + G+ P + V V LE SN N + M MI + F T L Sbjct: 178 T--MKRGDDGLFRTADGNPADADPAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKL 235 Query: 227 IDENEKSMLEAIRNI 241 I +++ +A + Sbjct: 236 IQSADQN-EQAANQL 249 >gi|110632656|ref|YP_672864.1| flagellar basal body rod protein FlgG [Mesorhizobium sp. BNC1] gi|110283640|gb|ABG61699.1| flagellar basal-body rod protein FlgG [Chelativorans sp. BNC1] Length = 262 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + +I A + L +A+N++N +T GF+ + +FS+++ ++ Sbjct: 1 MKALSIAATGMSAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQVERLQGVPERANQN 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V + GS +TG +LD AL G WF +E G + +R G F Sbjct: 61 IVPEGANIGLGVKTAAVRNVHVQGSLTNTGNKLDMALVGKGWFQIEGADGEPLYSRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 G LV+ G +PV + I IP V + G++ + + + L Sbjct: 121 NTNATGQLVTVDG-FPV----TPAITIPADAVEVIVNKSGQVFARIDGQADLQELGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G N+ P D TV++G+LE SN + + E+ ++I Sbjct: 176 ANFSNEAGLAPIGNNLFRETPASGPATIGVPGDPGFATVEQGYLEASNVDPVKEITELIS 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 AQRAYEMNSKVITAADEM 253 >gi|56695101|ref|YP_165448.1| flagellar basal body rod protein FlgF [Ruegeria pomeroyi DSS-3] gi|56676838|gb|AAV93504.1| flagellar basal-body rod protein FlgF [Ruegeria pomeroyi DSS-3] Length = 216 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 6/219 (2%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 A+N++N+ T G+R + FSE V +S S+E G TG + D Sbjct: 2 ANNIANSATSGYRQQGLVFSEFVRGGLG--TSSLSMARGQVRNTSQEQGVLTQTGGDFDL 59 Query: 83 ALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 A++G+ +F LE+P G LTR G F G LV+ G Y ++D PI +P + + Sbjct: 60 AIDGEGFFMLETPGGERLTRAGSFTPNAQGDLVNPDG-YRLIDANGAPIFVPPDIDGVRI 118 Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G IS G+++ +GL+ G +R + P+E G ++ +GFLE S Sbjct: 119 GPDGTISGAGRLLGQIGLFKPVDPHGLIREGGVFFRADDGTEPIE---GASIMQGFLEGS 175 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 N N++ ++ +++ + + + + + ++ + A+ ++ Sbjct: 176 NVNAIDQVARLVEVQRAYELGQSFLQAEDERIRNAVNSL 214 >gi|150388210|ref|YP_001318259.1| hypothetical protein Amet_0370 [Alkaliphilus metalliredigens QYMF] gi|149948072|gb|ABR46600.1| protein of unknown function DUF1078 domain protein [Alkaliphilus metalliredigens QYMF] Length = 264 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 32/267 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-------------- 47 + + A + + TVA+NM+N +T ++ + +F +++ A Sbjct: 1 MRALWTAASGMKAQQLNIDTVANNMANVNTTAYKAQRTEFKDLLYANMKRTNLNNGQGSP 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + + VA+ + + + G+ T LD A++G+ + A+E P G I TRDG Sbjct: 61 VNLQVGHGVMPVATSRMFTT---GNLEQTANPLDVAIDGEGFLAIEGPNGEIYYTRDGSL 117 Query: 107 KVT---DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-----IATM 158 K + D+ LV++ G Y VL I + + + E G I+ + + + T+ Sbjct: 118 KFSVEMDEMRLVTSEG-YTVLSDFDFEIIFDEGMKNIAISEGGVITAENEFGDIEELDTI 176 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L QG + + + G ++ +GFLE SN + EM +MI Sbjct: 177 KLVKFLNPQGLESVGRNLYKETVASGEEIPMEGEGRTSSILQGFLETSNVQIVDEMVKMI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I ++ ML N+ Sbjct: 237 TAQRAYETSSKTIQTADE-MLGMANNL 262 >gi|217972599|ref|YP_002357350.1| flagellar basal body rod protein FlgF [Shewanella baltica OS223] gi|217497734|gb|ACK45927.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS223] Length = 247 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYVAMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPSRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 TESPSANFRSGPIKTTGRDLDVAIKGDGWFAVQAKDGSEAYTRAGSLSFDSTGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P E ++ + G IS + + + + L + ++ + Sbjct: 119 N-PVMGDAG-PIVLPLPIEKVSISQDGIISVRPQGATAEVVEEVGRLKLVNPGNAE--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V V+ G +E SN N + EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLVSGNIAPADPSVGVESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|167623363|ref|YP_001673657.1| flagellar basal body rod protein FlgG [Shewanella halifaxensis HAW-EB4] gi|167353385|gb|ABZ75998.1| flagellar basal-body rod protein FlgG [Shewanella halifaxensis HAW-EB4] Length = 262 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 109/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 M + I A + +S +++N++N TVGF+ + F +++ + Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVSQAGGISASNT 60 Query: 52 -IDQKISFVASGKEYLSKE---VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +S A K ++E G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLSIGAGTKVVATQEMFTQGNMLTTDNSLDLMVEGPGFFEVQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + + G +V+ Y + I IP+ V +GE+S + +V+ + + Sbjct: 121 SLDETGQIVTPGSGYVIQPA----ITIPEGATSITVSAEGEVSVKTPGNAENQVVGQLAI 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 ADFINPSGLDPMGQNLYLETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 236 ESQRIYEMNSKVISAVDQ-MLSYVNQ 260 >gi|32490792|ref|NP_871046.1| flagellar basal body rod protein FlgG [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165998|dbj|BAC24189.1| flgG [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 260 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S I A + + +++N+SN T GF+ K F +++ Sbjct: 1 MIRSLAIAKTGLEAQQINMDVISNNISNVSTNGFKRQKAIFEDLLYQTIRQPGAKSSEQT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V S G +TG E D A++G +F + G + TR+G F Sbjct: 61 ILPSGLQLGTGVNSSATIKIHLQGGLTNTGNETDIAIQGPGFFQVLMSDGTNMYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ G LV+++G YPV I IP + + G +S + + + + + Sbjct: 121 QLDQYGQLVTSNG-YPVQPS----ITIPNGSSNLTISKDGIVSVMVPGQTQPQEVGQLTI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + S G + +E TP + +G ++K+ F+E+SN N E+ MI Sbjct: 176 STFINSSGLESAGESLYKETQSSGSPADNTPGMNGAG-SLKQKFVENSNVNIAEELITMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ ML+ + + Sbjct: 235 QTQRAYELNSKVISTSDQ-MLQRLSQL 260 >gi|157961173|ref|YP_001501207.1| flagellar basal body rod protein FlgG [Shewanella pealeana ATCC 700345] gi|157846173|gb|ABV86672.1| flagellar basal-body rod protein FlgG [Shewanella pealeana ATCC 700345] Length = 262 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 102/266 (38%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +++N++N TVGF+ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVNQAGGISASNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 S G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLSIGSGTKVVATQEIFTQGNMLTTDNSLDLLVEGPGFFEVQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D G +V+ Y V I IP+ V +GE+S + +V+ + + Sbjct: 121 SLDDTGQIVTPGSGYVVQPA----ITIPEDATSITVSAEGEVSVKTPGNAENQVVGQLAI 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPMGQNLYMETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 236 ESQRIYEMNSKVISAVDQ-MLSYVNQ 260 >gi|167568108|ref|ZP_02361024.1| flagellar basal body rod protein FlgF [Burkholderia oklahomensis EO147] gi|167574226|ref|ZP_02367100.1| flagellar basal body rod protein FlgF [Burkholderia oklahomensis C6786] Length = 253 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 20/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M + ++ S VA+N++NT T GFR F V G+ D Sbjct: 1 MDRLIYTAMTGATQSLEQQSVVANNLANTSTTGFRAQLATFRAVPMNFDDGSGNVDPSTT 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 ++ S G TG LD A++G W ++ P G TR G V +G L Sbjct: 61 RTYTLSSTPVADFTPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS 166 V+A+ PV+ P+ +P + +G+ G +S +I + L + D + Sbjct: 121 VTAN-NLPVVGNGG-PLAVPPNAQ-LTIGQDGTVSALMPGDPPTAVAMIDQLKLVNPDPA 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++R + G+ P + V V LE SN N + M MI + F T L Sbjct: 178 A--MKRGDDGLFRTADGNPADADPAVRVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKL 235 Query: 227 IDENEKSMLEAIRNI 241 I +++ +A + Sbjct: 236 IQSADQN-EQAANQL 249 >gi|145298493|ref|YP_001141334.1| flagellar basal body rod protein FlgG [Aeromonas salmonicida subsp. salmonicida A449] gi|142851265|gb|ABO89586.1| flagellar basal body rod protein FlgG [Aeromonas salmonicida subsp. salmonicida A449] Length = 262 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 111/266 (41%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S ++N++N TVG++ + F +++ N + S Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F Sbjct: 61 ELPSGLMLGAGAKVVATQKNHGQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + D+G++V+ YP+ IQIP+ + V G++S + +V+ + L Sbjct: 121 TLNDEGTIVTPGNGYPLQPE----IQIPENAQSVTVSTDGQVSIQLKGDGASQVVGQINL 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E I D GV +K+G LE SN N E+ +I Sbjct: 177 SDFVNASGLQPMGENMFLETQSSGAPIGGVAGADGLGV-IKQGMLETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + ++ + M I+ Sbjct: 236 QAQRVYEMNSKVLSAVDGMMSFLIQR 261 >gi|27363704|ref|NP_759232.1| flagellar basal body rod protein FlgF [Vibrio vulnificus CMCP6] gi|27359820|gb|AAO08759.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus CMCP6] Length = 249 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 97/242 (40%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + D F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM--QAYGDGLPTRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD +EG+ W + G LTR+G KV +G L +ASG Sbjct: 59 TERPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI IP +G G IS + I + L + Sbjct: 119 -HLVLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEEIDRIKLVK-TNDSALFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P P E V + G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRHKEPNQPYEADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|83312594|ref|YP_422858.1| flagellar basal body rod protein FlgG [Magnetospirillum magneticum AMB-1] gi|82947435|dbj|BAE52299.1| Flagellar basal body rod protein [Magnetospirillum magneticum AMB-1] Length = 261 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 111/266 (41%), Gaps = 32/266 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S NI LA + + +++N++N +T F + +F++++ + + S Sbjct: 1 MRSLNIAATGMLAQQTNVEVISNNIANMNTTAFTRRRPEFADLLYQNLRRVGSQSSDTGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y E GS ST LD A++G +F ++ P G TRDG F Sbjct: 61 IVPTGVQLGLGVKTTAVYRITEQGSVQSTDNTLDMAIQGKGYFQIKLPSGETAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 +++ +G++V+ G Y V+ + IP V G++ + ++ + L Sbjct: 121 QLSPEGTIVTHEG-YQVIPQ----VTIPSDAVGVTVDSTGQVIVKQDGQVQSQIKGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G R + P+ G T+ +GFLE SN N + E+ +I Sbjct: 176 ATFANDAGLEARGGNLFMETPASGQPVVQTPGKPGFGTILQGFLETSNVNVVAEVTNLIG 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ ML I + Sbjct: 236 AQRAYEMNSKVIQASDE-MLSTINQM 260 >gi|225181585|ref|ZP_03735026.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] gi|225167693|gb|EEG76503.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] Length = 251 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 108/255 (42%), Gaps = 18/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE--------VVGAIKNDI 52 M + + R T+ +N++N++T GF+ + + Sbjct: 1 MIRGLYTAASGMMVESTRQETITNNLANSETTGFKRDLALQRSHGEQPVVRLGDRQPFGV 60 Query: 53 DQKISFVASGK----EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 I + G + S E GS TG +LD A+ GD +F +E+ +G+ TR+G F + Sbjct: 61 RPVIGSLGVGSLIDGIHTSHEQGSLQETGRDLDVAMAGDGYFVVETEQGLRYTRNGAFSI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 D LV+ G + V+ P+Q+P + + G + + + S + Sbjct: 121 DADRMLVNDQG-HRVMGTTG-PLQLP--AGEVQIDQAGNVFVNDAMQGQLARVSFADNSE 176 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + +S + + ++G+ VK+GFLE SN ++ EM QM+ + + + ++ Sbjct: 177 LQKVGDS-LFTAAEGAEQQPVTGM-VKQGFLEGSNVQAVQEMVQMLAAMRAYETNQRVVQ 234 Query: 229 ENEKSMLEAIRNIAS 243 + + +A IA+ Sbjct: 235 AQDDMLRKATNEIAA 249 >gi|229542504|ref|ZP_04431564.1| flagellar basal-body rod protein FlgF [Bacillus coagulans 36D1] gi|229326924|gb|EEN92599.1| flagellar basal-body rod protein FlgF [Bacillus coagulans 36D1] Length = 262 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 M + +A +++ +A+N+SN DT G++T + F +++ + + Sbjct: 1 MLRGLYTAASGMIAQQRKTDLLANNLSNADTPGYKTDQSSIRSFPKMLLSYMDKNGTTGE 60 Query: 58 FVASGKEYLS----------KEVGSFISTGTELDFAL------EGDAWFALESPRG-IIL 100 V S + + G TG D A+ EG +F ++ G + Sbjct: 61 VVKSVGSLATGVYMQETLPLFKQGDLEETGNRTDLAIFDQASPEGSLFFRIDDGNGHEVY 120 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 TR+G F V +G L +ASG Y VLD I+ F+V G +++ G+ T+GL Sbjct: 121 TRNGNFTVNPEGYLTTASGHY-VLDENGGRIR--TGGTDFSVDAAGAVTENGRYAGTIGL 177 Query: 161 YSVDMSQGFVRRENSGIS-PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + + + N P +G +K+GFLE SN + M M+ + Sbjct: 178 AYAQNPAQLEKTGDGLYTLANNGALPAAGQNGFQIKQGFLESSNVDETKTMTDMMSAYRS 237 Query: 220 FNSITTLIDENEKSMLEAIRNIA 242 F + ++ + S+ +A+ ++ Sbjct: 238 FEANQKVLQAYDASLGKAVNDVG 260 >gi|152997580|ref|YP_001342415.1| flagellar basal-body rod protein FlgG [Marinomonas sp. MWYL1] gi|150838504|gb|ABR72480.1| flagellar basal-body rod protein FlgG [Marinomonas sp. MWYL1] Length = 261 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A++++L+ VA+N++N T F+ + F +++ Sbjct: 1 MNSALWVSKTGLSAMDKQLNVVANNLANVSTTAFKKDRAVFEDLMYKTVRAPGGLSAQNA 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V G G + T +LD A++G + + P G TR+G Sbjct: 61 ELPSGLQLGTGVKVGATQKDFSNGDYNMTDRQLDIAIQGKGFLQVLQPDGTIAYTRNGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ G L ++ G VL+ IQI + E G +S + + + + Sbjct: 121 QLNSQGQLATSGGL--VLEPG---IQIDPDVIEIMIAEDGIVSVRKNGDADAQQVGAINI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + P + P D G T+ +G LE SN NS+ E+ MI Sbjct: 176 AGFINPTGLSSAGQNLFTETNASGPPLVGVPGTDSLG-TIAQGMLEASNVNSIEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I + M AI+ + Sbjct: 235 TTQRAYEMNSKVIASADGMMSFAIQQL 261 >gi|312884832|ref|ZP_07744524.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] gi|309367484|gb|EFP95044.1| flagellar basal body rod protein FlgG [Vibrio caribbenthicus ATCC BAA-2122] Length = 261 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 104/259 (40%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYTIQRQPGAQVDEVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T +LD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTNQDLDLAVMGKGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +V +G +V++ G IQIP +VG G ++ + + + L Sbjct: 121 QVNSEGLMVNSQGL-----PLEPQIQIPDDALSISVGVDGTVTTTSAIDPTPQQVGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-----TVKRGFLEDSNANSMYEMGQMIH 215 G + E+L ++K+ LE SN + EM MI Sbjct: 176 ARFINPAGLEAVGGNLFRQTEASGLAEELIASEDGVGSIKQRALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|269103188|ref|ZP_06155885.1| flagellar basal-body rod protein FlgG [Photobacterium damselae subsp. damselae CIP 102761] gi|268163086|gb|EEZ41582.1| flagellar basal-body rod protein FlgG [Photobacterium damselae subsp. damselae CIP 102761] Length = 262 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 110/266 (41%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVGF+ + F ++ N + + Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGFKKGRAVFEDLFYQNINQPGGQATQDS 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ +T +D +EGD +F + P G + TR+G+F Sbjct: 61 TLPTGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGDGFFQILLPDGNMGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G LV+ Y V I +P+ VG GE+S Q+ +V+ + Sbjct: 121 TINAEGQLVTTGSGYVVQPE----IVVPEDAVGITVGTDGEVSARIRGQQENQVLGQLTT 176 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + P TP D G T+++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLFLPTGASGDAQEGTPGLDGLG-TIRQSMLETSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 236 EAQRVYEMNSKVISTVDQ-MLSYVNQ 260 >gi|304438315|ref|ZP_07398256.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368681|gb|EFM22365.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 264 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++ VA N++N +T G + ++ +F ++V + + Sbjct: 1 MMRALWSAASGMKAQQSQMDVVAHNIANVNTYGGKKVRAEFQDLVYQTLREAGARNGADS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 G+ +T D ++G+ +F + P G TRDG + Sbjct: 61 QYPTALQIGLGTRLAATQRVFTQGALQTTDNPTDIGIQGEGFFRVTMPDGTTAYTRDGTW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K+ D +V+ G L + I + + G +S + + + L Sbjct: 121 KLDSDRRMVTTDGY---LLADGITIGQNAPLDSITISGDGRVSYREAGQNQQQEAGQITL 177 Query: 161 YSVDMSQGFVRRE------NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + I P ED +G T+ +G LE SN + EM MI Sbjct: 178 ARFVNPAGLTSVGKNLFVVSDASGEAIESNPGEDGAG-TLTQGTLEMSNVQIVEEMVNMI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + S + I SMLE + Sbjct: 237 VSQRAYESNSKAI-TTSDSMLEIANQL 262 >gi|28897554|ref|NP_797159.1| flagellar basal body rod protein FlgF [Vibrio parahaemolyticus RIMD 2210633] gi|153839688|ref|ZP_01992355.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ3810] gi|260364612|ref|ZP_05777214.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus K5030] gi|260878283|ref|ZP_05890638.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AN-5034] gi|260898113|ref|ZP_05906609.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus Peru-466] gi|260901955|ref|ZP_05910350.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ4037] gi|5361009|gb|AAD42916.1|U12817_10 polar flagellar FlgF homolog [Vibrio parahaemolyticus] gi|28805766|dbj|BAC59043.1| polar flagellar FlgF [Vibrio parahaemolyticus RIMD 2210633] gi|149746798|gb|EDM57786.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ3810] gi|308086109|gb|EFO35804.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus Peru-466] gi|308090198|gb|EFO39893.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AN-5034] gi|308106789|gb|EFO44329.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ4037] gi|308115108|gb|EFO52648.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus K5030] gi|328473452|gb|EGF44300.1| flagellar basal body rod protein FlgF [Vibrio parahaemolyticus 10329] Length = 249 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + D F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM--QAYGDGLPSRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD +EG W ++ G LTR+G K+ +G L +ASG Sbjct: 59 TERPGHNFAQGSVITTGRDLDITVEGSGWISVLDHTGKEGLTRNGNLKIDQNGMLTNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + ++ + L D Q + Sbjct: 119 -HAVLGENDAPITLPIPLSKIEIGRDGTISVLPQGAPAEELQIVDRIKLVKTDD-QSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P P E ++++ G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRHKTPNQPYEADGTISIQTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|326202442|ref|ZP_08192311.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] gi|325987560|gb|EGD48387.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] Length = 270 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 123/270 (45%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK------NDIDQ 54 M + + A + + +++N++N +T G++ + +F +++ N + Sbjct: 1 MMRALYTAGSGMKAQQFNVDVISNNLANVNTTGYKKERAEFKDLLYQTMDRAYVLNGGGK 60 Query: 55 KIS-----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK- 107 ++ + E G+ TG+ LDFA++G+ +F + P+G + TRDG FK Sbjct: 61 PVNLQVGHGTVVSSTIRNFENGTPEQTGSTLDFAIDGEGFFTIMGPQGTVKYTRDGSFKL 120 Query: 108 -VTDDGS--LVSASGKYPVLDMASVPIQIPQKDEI--FNVGEKGEIS---QKGKVIA--- 156 +T+DG L ++ G Y VLD + I + + +V +GE+S +G + Sbjct: 121 SITEDGMKKLTTSDG-YAVLDNSGGEILFDPEVKTSELSVSPRGEMSYKNAEGVSVPMDQ 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPN-IPPTPLE----DLSGVTVKRGFLEDSNANSMYEMG 211 T+G+ + N+ S N PL+ + + +K+GFLE SN + EM Sbjct: 180 TIGMVTFPNKYALEAVGNNLYSSNSATGEPLQVSEDENAKSIMKQGFLESSNVQVVDEMV 239 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++I + + + I ++ ML+ N+ Sbjct: 240 KLIVAQRAYEVSSKAIQSSDD-MLQIANNL 268 >gi|330721006|gb|EGG99167.1| Flagellar basal-body rod protein FlgG [gamma proteobacterium IMCC2047] Length = 261 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A +Q L+++++N++N T G++ + F +++ GA + Sbjct: 1 MLASLWISKTGLSAQDQALASISNNLANVSTTGYKRERAVFQDLLYPVHTQPGAQSSQST 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q S + +G + GS T LD A+ G +F + P G RDG+F Sbjct: 61 QLPSGLQTGTGVKTVATQKLHTNGSLEVTDQPLDIAINGRGYFQVLLPDGETGYARDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ DG +V++ G I +P +G G IS I + L Sbjct: 121 QLNSDGVIVNSQGF-----ELQPSITVPANTLNITIGSDGVISATVAGSSTPTQIGDIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E + TP G T+++G LE+SN N + E+ MI Sbjct: 176 AEFINPTGLQAIGGNLYKETAASGTPTTGTPGLSGRG-TIEQGVLENSNVNIVEELVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + T +I +++ + Sbjct: 235 TTQRAYEMNTKVISTSDQMLQ 255 >gi|37679148|ref|NP_933757.1| flagellar basal body rod protein FlgF [Vibrio vulnificus YJ016] gi|320157108|ref|YP_004189487.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus MO6-24/O] gi|37197890|dbj|BAC93728.1| flagellar basal body rod protein FlgF [Vibrio vulnificus YJ016] gi|319932420|gb|ADV87284.1| flagellar basal-body rod protein FlgF [Vibrio vulnificus MO6-24/O] Length = 249 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD +EG+ W + G LTR+G KV +G L +ASG Sbjct: 59 TERPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI IP +G G IS + I + L + Sbjct: 119 -HLVLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEEIDRIKLVK-TNDSALFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P P E V + G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRHKEPNQPYEADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|203284668|ref|YP_002222408.1| flagellar basal-body rod protein [Borrelia duttonii Ly] gi|201084111|gb|ACH93702.1| flagellar basal-body rod protein [Borrelia duttonii Ly] Length = 265 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 106/269 (39%), Gaps = 35/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + T+A+N+SN +T+GF+ I+ +F +++ + + Sbjct: 1 MMRALWTSASGMKAQQYNVDTIANNLSNVNTIGFKKIRAEFEDLIYQTQRRAGTPATENT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + E G+ T D A+EGD ++ + G TRDG F Sbjct: 61 VTPLGNQVGHGTKVSATHRLFEQGNLQVTNLNTDVAIEGDGFYKVLLSDGTYGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQKGK------VIATM 158 K+ +G+LV+ G Y +L I P++ + ++G IS K + + Sbjct: 121 KIDANGNLVTNQG-YILLPE----ISFPEEYIKNSIAISQEGIISVKVNEGLEPIELGQI 175 Query: 159 GLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G N+ G I P + G +K+G LE SN EM Sbjct: 176 EIARFVNPAGLNAIGNNIFKETIGSGEEISGIPGSNGMG-KLKQGMLEMSNVAIAEEMVT 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + I ++ +ML N+ Sbjct: 235 MIVAQRAYEINSKAIHTSD-NMLGIANNL 262 >gi|27363703|ref|NP_759231.1| flagellar basal body rod protein FlgG [Vibrio vulnificus CMCP6] gi|37679149|ref|NP_933758.1| flagellar basal body rod protein FlgG [Vibrio vulnificus YJ016] gi|320157107|ref|YP_004189486.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus MO6-24/O] gi|27359819|gb|AAO08758.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus CMCP6] gi|37197891|dbj|BAC93729.1| flagellar basal body rod protein FlgG [Vibrio vulnificus YJ016] gi|319932419|gb|ADV87283.1| flagellar basal-body rod protein FlgG [Vibrio vulnificus MO6-24/O] Length = 262 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 110/259 (42%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++T+++N++N T+GF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 QLPSGLMLGAGSKVVATQKVHTHGNAQTTTNALDLMVEGDGFFQITMPDGNIGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G +V++ YP+ I IP+ VG GE+S Q +V+ + + Sbjct: 121 TLNGEGVVVTSGSGYPLEPE----IVIPEDAISITVGTDGEVSVRIRGQQNNQVVGQITI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G+ V++ LE SN N E+ MI Sbjct: 177 TDFVNPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGEVRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISSVDKMM 255 >gi|119775448|ref|YP_928188.1| flagellar basal body rod protein FlgG [Shewanella amazonensis SB2B] gi|119767948|gb|ABM00519.1| flagellar basal-body rod protein FlgG [Shewanella amazonensis SB2B] Length = 262 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 108/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + ++ +++N++N TVG++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNALDMMIEGPGFFEIQLPDGTTAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 + D G +V+ Y + I IP V +GE+S K +++ + L Sbjct: 121 SLDDTGQIVTPGSGYVLQPA----ITIPDNATSITVSAEGEVSVKTPGAAESQIVGQLTL 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPIGQNLYLETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLAYVNQNL 262 >gi|84514831|ref|ZP_01002194.1| Flagellar distal rod protein [Loktanella vestfoldensis SKA53] gi|84510990|gb|EAQ07444.1| Flagellar distal rod protein [Loktanella vestfoldensis SKA53] Length = 261 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 116/266 (43%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + ++ A + R+ +A+N++N +TVGF++ +V F ++ +K + S Sbjct: 1 MTNAMHVAKTGLNAQQTRMQVIANNLANLNTVGFKSDRVNFESLLYQVKRSGGDQTSEGT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G ++ + G ++T D A+EG +F + P G + TR+G F Sbjct: 61 ALTSALALGTGVRAVNTQKLYTQGGMVNTDNSFDLAIEGQGFFQVLMPDGRVGYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG++ +ASG Y V I+IP N+ + G +S + + + + + Sbjct: 121 SRSADGTMTTASG-YVVQPE----IRIPADATEVNISQDGLVSVRQAGEEEAQEVGQLTI 175 Query: 161 YSVDMSQGFVRRENS----GISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 S +G S ++ P G+ + +G LE SN N + ++ +MI Sbjct: 176 ASFANPRGLQPIGESFVTQTLASGAPTVAAPQAQGLGKLMQGALEGSNVNVVQQLVEMIE 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ M N+ Sbjct: 236 TQRAYEVSSKAISSSDEMMRYISNNL 261 >gi|317121025|ref|YP_004101028.1| flagellar basal-body rod protein FlgF [Thermaerobacter marianensis DSM 12885] gi|315591005|gb|ADU50301.1| flagellar basal-body rod protein FlgF [Thermaerobacter marianensis DSM 12885] Length = 249 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 105/250 (42%), Gaps = 12/250 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEV-VGAIKNDIDQKI 56 M + LA + +A++++N +T G++ + F E+ V ++ + Sbjct: 1 MLRGLYTAASGMLARVLQQERLANDLANVNTPGYKASRNVTEAFPELFVARLERAGAAPV 60 Query: 57 SFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 V +G + L G ++ TG D AL GD +F + P G TR G F V +G Sbjct: 61 GPVGTGAVVAEPGLDLTAGPWLETGRPQDLALAGDGFFVVMGPAGPAYTRAGNFTVGPEG 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 L + G +PVL P+ + F V G++ G V+ T+ + + Sbjct: 121 YLQTPDG-WPVLGTDGQPLLV--GTADFTVTPDGQVQAGGVVVGTVARVTFANPAALRKA 177 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ++ + P + V++G LE SN + + + +M+ + F + + ++ Sbjct: 178 GDNLLVDPGGAGPAVPVDTP-VRQGVLEQSNVDPVRTVVEMLANFRAFEASQRAVQAQDQ 236 Query: 233 SMLEAIRNIA 242 ++ AI+ + Sbjct: 237 TLGLAIQEVG 246 >gi|254508430|ref|ZP_05120550.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus 16] gi|219548640|gb|EED25645.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus 16] Length = 249 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALYLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + + GS I+TG +LD +EG+ W ++ G LTRDG K+ +G LVS +G Sbjct: 59 TERPGHNFQQGSVITTGRDLDVTIEGNGWISVLDKTGKEGLTRDGNLKIDVNGLLVSGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 VL PI +P +G G IS + V+ + L + D Q + Sbjct: 119 NL-VLGETGAPITLPIPLSKVEIGTDGTISVVPQGAPADAIEVVDRIKLTNTDN-QSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E +GV + G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRAKDPNAAYEADAGVKLLTGAIEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|148976395|ref|ZP_01813101.1| polar flagellar FlgF [Vibrionales bacterium SWAT-3] gi|145964218|gb|EDK29474.1| polar flagellar FlgF [Vibrionales bacterium SWAT-3] Length = 249 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + + F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM--QAYGEGMPTRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS ++TG +LD ++GD W ++ G LTR+G KV +G L +ASG Sbjct: 59 TERPGHNFAQGSVVTTGRDLDVTIQGDGWISVMDNTGREGLTRNGNLKVDQNGLLTNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + V+ + L D Q + Sbjct: 119 -HLVLGENDAPITLPIPISKVEIGTDGTISVIPQGAPAEELEVVDRIKLVRPDN-QSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E + VT+ +G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRSKNPEQAYEADAAVTLLKGAVEGSNVNAVGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|295706277|ref|YP_003599352.1| flagellar hook protein FlgE [Bacillus megaterium DSM 319] gi|294803936|gb|ADF41002.1| flagellar hook protein FlgE [Bacillus megaterium DSM 319] Length = 263 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 102/262 (38%), Gaps = 25/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + +L + +N++N +T G++ + F ++V + Sbjct: 1 MLRSMYSGISGMKNFQTKLDVLGNNIANVNTYGYKKGRTTFQDLVSQQVAGATAPGANRG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 G + GS STG LD A+ GD +F + TR G F + Sbjct: 61 GVNAKQVGLGSQIGTIDTVQTAGSIQSTGRPLDLAISGDGYFVVRDGVTNYYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG---EISQKGKV--IATMGLYSV 163 G+LV+ G Y V I IP + +++G G I G + T+ L Sbjct: 121 DSSGNLVTGDGLY-VQKTGGGNINIPSTSKSYSIGADGKVNIIDANGNISSNQTVELAKF 179 Query: 164 DMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 ++G + + + ++ P + +G V LE SN + E MI Sbjct: 180 ANNEGLQKAGGNLFAQSVNSGGPLVGAPGANGTGSFVSS-ALEMSNVDLSEEFTDMIVAQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F + T +I +++ + E + Sbjct: 239 RGFQANTRIITTSDEILQELVN 260 >gi|22127325|ref|NP_670748.1| flagellar basal body rod protein FlgG [Yersinia pestis KIM 10] gi|45442798|ref|NP_994337.1| flagellar basal body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|51597635|ref|YP_071826.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 32953] gi|108809053|ref|YP_652969.1| flagellar basal body rod protein FlgG [Yersinia pestis Antiqua] gi|108810750|ref|YP_646517.1| flagellar basal body rod protein FlgG [Yersinia pestis Nepal516] gi|145597819|ref|YP_001161895.1| flagellar basal body rod protein FlgG [Yersinia pestis Pestoides F] gi|150260247|ref|ZP_01916975.1| lateral flagellar basal body rod protein [Yersinia pestis CA88-4125] gi|153947407|ref|YP_001399636.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|162421910|ref|YP_001604845.1| flagellar basal body rod protein FlgG [Yersinia pestis Angola] gi|165925150|ref|ZP_02220982.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165939077|ref|ZP_02227629.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|166008679|ref|ZP_02229577.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166212222|ref|ZP_02238257.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|167399088|ref|ZP_02304612.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419078|ref|ZP_02310831.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425222|ref|ZP_02316975.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466335|ref|ZP_02331039.1| flagellar basal-body rod protein FlgG [Yersinia pestis FV-1] gi|186896769|ref|YP_001873881.1| flagellar basal body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] gi|218927914|ref|YP_002345789.1| flagellar basal body rod protein FlgG [Yersinia pestis CO92] gi|229837410|ref|ZP_04457573.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|229840625|ref|ZP_04460784.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842824|ref|ZP_04462976.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229900947|ref|ZP_04516071.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|270487670|ref|ZP_06204744.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294502791|ref|YP_003566853.1| putative flagellar basal-body rod protein [Yersinia pestis Z176003] gi|21960406|gb|AAM86999.1|AE013948_7 flagellar biosynthesis protein, cell-distal portion of basal-body rod [Yersinia pestis KIM 10] gi|45437664|gb|AAS63214.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|51590917|emb|CAH22573.1| putative flagellar basal-body rod protein [Yersinia pseudotuberculosis IP 32953] gi|108774398|gb|ABG16917.1| flagellar basal-body rod protein [Yersinia pestis Nepal516] gi|108780966|gb|ABG15024.1| putative flagellar basal-body rod protein [Yersinia pestis Antiqua] gi|115346525|emb|CAL19402.1| putative flagellar basal-body rod protein [Yersinia pestis CO92] gi|145209515|gb|ABP38922.1| flagellar basal-body rod protein [Yersinia pestis Pestoides F] gi|149289655|gb|EDM39732.1| lateral flagellar basal body rod protein [Yersinia pestis CA88-4125] gi|152958902|gb|ABS46363.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis IP 31758] gi|162354725|gb|ABX88673.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola] gi|165913033|gb|EDR31658.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|165923350|gb|EDR40501.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165992018|gb|EDR44319.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166206968|gb|EDR51448.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|166963072|gb|EDR59093.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051592|gb|EDR63000.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055985|gb|EDR65766.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699795|gb|ACC90424.1| flagellar basal-body rod protein FlgG [Yersinia pseudotuberculosis PB1/+] gi|229682286|gb|EEO78378.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|229690091|gb|EEO82148.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229696991|gb|EEO87038.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705533|gb|EEO91543.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|262360823|gb|ACY57544.1| putative flagellar basal-body rod protein [Yersinia pestis D106004] gi|262364768|gb|ACY61325.1| putative flagellar basal-body rod protein [Yersinia pestis D182038] gi|270336174|gb|EFA46951.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294353250|gb|ADE63591.1| putative flagellar basal-body rod protein [Yersinia pestis Z176003] gi|320016709|gb|ADW00281.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 261 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 107/260 (41%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + ++ +++N++N +T GF+ +V F+++ + + Sbjct: 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V VG+ T ++D A+ G +F +E+ G I TR G Sbjct: 61 TTPSGIQFGSGVQIVGTQKQFTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 DG LV+A G P++ I++P + ++G+ G ++ + + + L Sbjct: 121 TTNADGVLVNAQG-MPLIPQ----IELPTGSKQLHIGKDGTVTATVGGETEPVEVGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + + P E+ G +++G LE SN + EM MI Sbjct: 176 VNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFG-QLEQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + ++ + + Sbjct: 235 TVQRAYEMNAKMVSAADDML 254 >gi|293605005|ref|ZP_06687401.1| flagellar basal-body rod protein FlgG [Achromobacter piechaudii ATCC 43553] gi|292816610|gb|EFF75695.1| flagellar basal-body rod protein FlgG [Achromobacter piechaudii ATCC 43553] Length = 261 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 101/266 (37%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + + +++N++N T GF+ + F +++ ++ Sbjct: 1 MMRSLWIAKTGLEGQQTSMDVISNNLANVSTNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + E G+ +TG E+D A+ G + +E P G TRDG Sbjct: 61 QLPSGLQLGTGARVAATERIHTAGNLNNTGGEMDIAINGRGFLQVELPDGTQGYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------GKVIATMG 159 + +G L + SG + P+ +P ++G+ G +S I + Sbjct: 121 QRDQNGQLTTVSGY-----VIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQIGQLQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + + G + E P P D +G ++ + ++E SN N E+ M Sbjct: 176 IATFINPTGLQSIGENLYLETDASGPANLLQPGVDGAG-SIMQNYVETSNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + +++ + + Sbjct: 235 ITTQRAYEMNSKAVKTSDEMLARLTQ 260 >gi|258621050|ref|ZP_05716084.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM573] gi|258625278|ref|ZP_05720186.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM603] gi|262166281|ref|ZP_06034018.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM223] gi|262170826|ref|ZP_06038504.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451] gi|258582451|gb|EEW07292.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM603] gi|258586438|gb|EEW11153.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM573] gi|261891902|gb|EEY37888.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451] gi|262025997|gb|EEY44665.1| flagellar basal-body rod protein FlgF [Vibrio mimicus VM223] Length = 249 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD ++G+ W ++ G LTR+G ++ + G L++ +G Sbjct: 59 TERPGHNFAQGSVITTGRDLDITIQGEGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +PVL PI +P +G G IS + + V+ + L + Q + Sbjct: 119 -HPVLGETGAPITLPVPLTKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRL-NDQALFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P T E + V + G LE SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|268589980|ref|ZP_06124201.1| flagellar basal-body rod protein FlgG [Providencia rettgeri DSM 1131] gi|291314698|gb|EFE55151.1| flagellar basal-body rod protein FlgG [Providencia rettgeri DSM 1131] Length = 260 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 100/265 (37%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + L +++N++N T GF+ + F +++ GA+ ++ Sbjct: 1 MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDLMYQNIRQPGAMSSEQT 60 Query: 54 QKISFVASGK------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S + G G+ TG D A+ G + ++ P G TRDG Sbjct: 61 SLPSGLQMGTGSRPVATMRIHAQGALNKTGNTNDIAIRGQGFLHVQMPDGTDAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG LV++SG V I IP ++ G ++ + + I + L Sbjct: 121 QPNQDGQLVTSSGYQIV-----PAIMIPDNANSLSIARDGTVTITVYGDNQPQQIGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P + +G+ + + LE SN N E+ MI Sbjct: 176 TTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGL-LYQNMLETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + Sbjct: 235 QTQRAYEINSKAVSASDQMLQRLTQ 259 >gi|260768780|ref|ZP_05877714.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|260616810|gb|EEX41995.1| flagellar basal-body rod protein FlgG [Vibrio furnissii CIP 102972] gi|315180483|gb|ADT87397.1| hypothetical flagellar basal-body rod protein [Vibrio furnissii NCTC 11218] Length = 261 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 107/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + I A + +++ +++N++N +TVGF+ +V F ++ +++ Sbjct: 1 MHNALMISKTGMAAQDAKMTAISNNLANVNTVGFKRDRVVFEDLFYSVEKQAGTGTNDLN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + V G+ +T + D A+ GD +F +E P G + TR+G+F Sbjct: 61 IHPTGVQLGNGVRVAGTEKVFTQGNINNTSQQFDLAIVGDGFFQIEGPEGEVLYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG++V+ G I +P + + E G++S + + + + L Sbjct: 121 HLNADGAIVNTQGYLL-----QPEINVPDNATLVTITEDGQVSAVVSGQVEPEQLGEITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + + ++ D +GV +K+G LE SN + EM MI Sbjct: 176 VKFMNPSGLTAKGANLLAETEASGEAMELVAGTDGAGV-IKQGALETSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ + N Sbjct: 235 STQRAYEMSAKMVSAADQMLQYIANN 260 >gi|326386932|ref|ZP_08208546.1| flagellar basal body rod protein FlgG [Novosphingobium nitrogenifigens DSM 19370] gi|326208612|gb|EGD59415.1| flagellar basal body rod protein FlgG [Novosphingobium nitrogenifigens DSM 19370] Length = 262 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 100/264 (37%), Gaps = 30/264 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS----- 57 ++ + A + R+ +A+N++N T GF+ + F+ + + S Sbjct: 4 SALYVARTGLEAQDTRMRVIANNLANVSTTGFKRDRANFASLAYQDARVAGAQSSNETTY 63 Query: 58 --------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 V GS STG LD AL+GD +F + P G + TR G F Sbjct: 64 ATGLNLGTGVGIQSTTPDMTEGSLQSTGNALDLALDGDGYFQISMPGGQLSYTRAGNFTR 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYS 162 + +G LV++ G I IP+ V + G +S + I + + S Sbjct: 124 SPEGLLVTSQGY-----ALQPQITIPEGATGITVAQDGTVSATLPGSSQATSIGQITIAS 178 Query: 163 VDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 ++ + P++ V++GFLE SN + + E+ MI Sbjct: 179 FTNPAALKAIGDNFYTETTGSGPVQLGIAGQNGRGNVRQGFLEASNVSVVSELVDMIECQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + A + + Sbjct: 239 RAYEINSKMVSAVDDMLKNANQTL 262 >gi|146293688|ref|YP_001184112.1| flagellar basal body rod protein FlgG [Shewanella putrefaciens CN-32] gi|145565378|gb|ABP76313.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens CN-32] gi|319427087|gb|ADV55161.1| flagellar basal-body rod protein FlgG [Shewanella putrefaciens 200] Length = 262 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 109/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + ++ +++N++N TVG++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFTQGNMLTTDNSLDLMIEGPGFFEIQLPDGTTAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP+ V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVLQPA----ITIPEDATSITVSAEGEVSVKTAGAAENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLAYVNQNL 262 >gi|163750568|ref|ZP_02157806.1| flagellar basal-body rod protein FlgG [Shewanella benthica KT99] gi|161329723|gb|EDQ00712.1| flagellar basal-body rod protein FlgG [Shewanella benthica KT99] Length = 262 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 MQ + I A + +S +++N++N T+G++ + F +++ N Sbjct: 1 MQAALWISKTGLDAQQTNISVISNNLANASTIGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D G +V++ Y V I IP V +GE+S + +V+ + + Sbjct: 121 TLDDTGQIVTSGSGYVVQPA----ITIPDNATSITVSAEGEVSVKMPGTIENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPMGQNLYLETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 QSQRIYEMNSKVISAVDQMLSYVNQNL 262 >gi|323498418|ref|ZP_08103414.1| flagellar basal body rod protein FlgG [Vibrio sinaloensis DSM 21326] gi|323316491|gb|EGA69506.1| flagellar basal body rod protein FlgG [Vibrio sinaloensis DSM 21326] Length = 262 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 108/259 (41%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N TVG++ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTVGYKKSRAVFEDLFYQNINQPGGQSSQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T LD +EGD +F + P G I +R+G+F Sbjct: 61 ELPTGLMLGAGSKVVATQKVHTQGNTQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 V D+G++V++ Y + I IP+ VG GE+S Q V+ + Sbjct: 121 TVNDEGAIVTSGAGYGLEPE----IVIPEDAISITVGTDGEVSVRIRGEQNNVVVGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E + G +++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPIGQNLYLPTGASGDPQEGVPGFDGFGDIRQSMLETSNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +K M Sbjct: 237 AQRVYEMNSKVISAVDKMM 255 >gi|148554187|ref|YP_001261769.1| flagellar basal body rod protein FlgG [Sphingomonas wittichii RW1] gi|148499377|gb|ABQ67631.1| flagellar basal-body rod protein FlgG [Sphingomonas wittichii RW1] Length = 262 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 100/266 (37%), Gaps = 32/266 (12%) Query: 1 MQTS-FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-- 57 M + ++ A R+ +A+N++N +T GF+ + F + S Sbjct: 1 MSNAALHVARTGLDAQNMRMQVIANNLANVNTTGFKRDRASFETLAYQAMTAPGAASSDS 60 Query: 58 -----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 V + G+ TG LD A++GD +F + P G TRDG Sbjct: 61 TKFATGTNLGTGVQINGTAKIQTQGALQETGNPLDMAIQGDGYFQVLLPDGRTGYTRDGN 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMG 159 F +DDG++V+A G + IQIP+ + G +S + + Sbjct: 121 FNRSDDGTIVTADGYHL-----QPQIQIPENTTNLTIAADGTVSATQAGETTSTELGKIE 175 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 L G N+ P G+ T+++ LE SN N + E+ MI Sbjct: 176 LARFSNPAGLQAEGNNILTETPASGQPQTGPGGIDGRGTIQQSSLESSNVNIVEELVDMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML+ + Sbjct: 236 ETQRAYEVNSKMISSTDQ-MLQYVNQ 260 >gi|15642195|ref|NP_231827.1| flagellar basal body rod protein FlgF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586260|ref|ZP_01676050.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 2740-80] gi|121726526|ref|ZP_01679775.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V52] gi|147673274|ref|YP_001217713.1| flagellar basal body rod protein FlgF [Vibrio cholerae O395] gi|153213604|ref|ZP_01948877.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 1587] gi|153817120|ref|ZP_01969787.1| flagellar basal-body rod protein FlgF [Vibrio cholerae NCTC 8457] gi|153820819|ref|ZP_01973486.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33] gi|153825314|ref|ZP_01977981.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-2] gi|153829346|ref|ZP_01982013.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 623-39] gi|183179566|ref|ZP_02957777.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-3] gi|227082320|ref|YP_002810871.1| flagellar basal-body rod protein FlgF [Vibrio cholerae M66-2] gi|229507727|ref|ZP_04397232.1| flagellar basal-body rod protein FlgF [Vibrio cholerae BX 330286] gi|229512078|ref|ZP_04401557.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33] gi|229513840|ref|ZP_04403302.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TMA 21] gi|229519214|ref|ZP_04408657.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC9] gi|229522145|ref|ZP_04411562.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TM 11079-80] gi|229524191|ref|ZP_04413596.1| flagellar basal-body rod protein FlgF [Vibrio cholerae bv. albensis VL426] gi|229528799|ref|ZP_04418189.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 12129(1)] gi|229607231|ref|YP_002877879.1| flagellar basal body rod protein FlgF [Vibrio cholerae MJ-1236] gi|254225802|ref|ZP_04919407.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V51] gi|254849325|ref|ZP_05238675.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MO10] gi|255747105|ref|ZP_05421050.1| flagellar basal-body rod protein FlgF [Vibrio cholera CIRS 101] gi|262161351|ref|ZP_06030461.1| flagellar basal-body rod protein FlgF [Vibrio cholerae INDRE 91/1] gi|262167778|ref|ZP_06035480.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC27] gi|262191688|ref|ZP_06049864.1| flagellar basal-body rod protein FlgF [Vibrio cholerae CT 5369-93] gi|297580842|ref|ZP_06942767.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC385] gi|298500426|ref|ZP_07010231.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MAK 757] gi|9656752|gb|AAF95341.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549526|gb|EAX59552.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 2740-80] gi|121630979|gb|EAX63358.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V52] gi|124115803|gb|EAY34623.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 1587] gi|125621708|gb|EAZ50037.1| flagellar basal-body rod protein FlgF [Vibrio cholerae V51] gi|126512388|gb|EAZ74982.1| flagellar basal-body rod protein FlgF [Vibrio cholerae NCTC 8457] gi|126521611|gb|EAZ78834.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33] gi|146315157|gb|ABQ19696.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O395] gi|148875187|gb|EDL73322.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 623-39] gi|149740998|gb|EDM55067.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-2] gi|183012977|gb|EDT88277.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MZO-3] gi|227010208|gb|ACP06420.1| flagellar basal-body rod protein FlgF [Vibrio cholerae M66-2] gi|227014092|gb|ACP10302.1| flagellar basal-body rod protein FlgF [Vibrio cholerae O395] gi|229332573|gb|EEN98059.1| flagellar basal-body rod protein FlgF [Vibrio cholerae 12129(1)] gi|229337772|gb|EEO02789.1| flagellar basal-body rod protein FlgF [Vibrio cholerae bv. albensis VL426] gi|229341070|gb|EEO06075.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TM 11079-80] gi|229343903|gb|EEO08878.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC9] gi|229349021|gb|EEO13978.1| flagellar basal-body rod protein FlgF [Vibrio cholerae TMA 21] gi|229352043|gb|EEO16984.1| flagellar basal-body rod protein FlgF [Vibrio cholerae B33] gi|229355232|gb|EEO20153.1| flagellar basal-body rod protein FlgF [Vibrio cholerae BX 330286] gi|229369886|gb|ACQ60309.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MJ-1236] gi|254845030|gb|EET23444.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MO10] gi|255735507|gb|EET90907.1| flagellar basal-body rod protein FlgF [Vibrio cholera CIRS 101] gi|262023843|gb|EEY42542.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC27] gi|262028662|gb|EEY47316.1| flagellar basal-body rod protein FlgF [Vibrio cholerae INDRE 91/1] gi|262032427|gb|EEY50989.1| flagellar basal-body rod protein FlgF [Vibrio cholerae CT 5369-93] gi|297534668|gb|EFH73504.1| flagellar basal-body rod protein FlgF [Vibrio cholerae RC385] gi|297541119|gb|EFH77173.1| flagellar basal-body rod protein FlgF [Vibrio cholerae MAK 757] gi|327484715|gb|AEA79122.1| Flagellar basal-body rod protein FlgF [Vibrio cholerae LMA3894-4] Length = 249 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD ++GD W ++ G LTR+G ++ + G L++ +G Sbjct: 59 TERPGHNFAQGSVITTGRDLDITIQGDGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +PVL PI +P +G G IS + + V+ + L + Q + Sbjct: 119 -HPVLGETGAPITLPVPLNKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRL-NDQSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P T E + V + G LE SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KSMLEA 237 + M +A Sbjct: 237 E-MDKA 241 >gi|294084416|ref|YP_003551174.1| flagellar basal-body rod protein FlgG [Candidatus Puniceispirillum marinum IMCC1322] gi|292663989|gb|ADE39090.1| flagellar basal-body rod protein FlgG [Candidatus Puniceispirillum marinum IMCC1322] Length = 262 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 110/265 (41%), Gaps = 32/265 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS----- 57 +S ++ A + R+ +A+N++N +T GF+ + F ++ ++ ++ S Sbjct: 4 SSMHVAKTGLNAQQTRMQVIANNLANVNTTGFKRDRANFETLLYQVRRSAGEETSADTDL 63 Query: 58 ----FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 V +G ++ + GS I T LD A+EG +F + P G I TR+G F Sbjct: 64 TSAFAVGTGARIVNTQKMMSQGSMIQTDNSLDLAIEGSGFFQVLLPDGQIGYTRNGSFST 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYS 162 +G+L + SG VL IQIP N+ G +S + + + M + Sbjct: 124 NAEGTLTTPSGY--VL---QPEIQIPGNASQINISGDGIVSVIVAGEIEPQNVGQMTIAD 178 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + +G E + I P E G + +G LE SN N + E+ MI Sbjct: 179 FNNRRGLQPIGESFSIETAASGAAIIANPQEQGFG-KLVQGSLEASNVNVVQELVNMIET 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ + N+ Sbjct: 238 QRAYEVSSKSITSVDEMLRFISNNL 262 >gi|167835112|ref|ZP_02461995.1| flagellar basal body rod protein FlgF [Burkholderia thailandensis MSMB43] Length = 253 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 20/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M + ++ S VA+N++N T GFR F V G+ D Sbjct: 1 MDRLIYTAMTGAAQSLEQQSVVANNLANASTTGFRAQLATFRAVPMNFDDGSGNVDPATT 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 ++ S G TG LD A++G W ++ P G TR G V +G L Sbjct: 61 RTYTLSSTPGADFAPGPIERTGNPLDVAVQGPGWLSVMLPDGTEAYTRAGNLHVDQNGQL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS 166 V+A+ PV+ P+ +P + +G G +S +I + L + D + Sbjct: 121 VTAN-NLPVVGNGG-PLAVPPNAQ-LTIGADGTVSALMPGDPPTAVAMIDQLKLVNPDPA 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++R + G+ P + + V V LE SN N + M MI + F T L Sbjct: 178 T--MKRGDDGLFRTADGNPADADAAVKVVPNSLEGSNVNPVAAMVSMIDNARAFELQTKL 235 Query: 227 IDENEKSMLEAIRNI 241 I +++ +A + Sbjct: 236 IQSADQN-EQAANQL 249 >gi|170737040|ref|YP_001778300.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] gi|169819228|gb|ACA93810.1| flagellar basal-body rod protein FlgG [Burkholderia cenocepacia MC0-3] Length = 261 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 29/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I A + +L +A+N++N +TVGF+ + F ++ + ++S A Sbjct: 1 MNHAMWISKTGIQAQDAKLQAIANNLANVNTVGFKRDRAVFEDMFYRAERQPGAQVSDNA 60 Query: 61 SGKEYL------------SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 +G G+ TG LD A+ G+ + +E P G + TR G+ + Sbjct: 61 TGPGVQLGNGTRIAGTQKVFTTGALQETGQPLDVAVVGNGFLQVEMPNGEVGYTRAGQLR 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLY 161 + D G L +A G V I IP + + E G +S + + L Sbjct: 121 LNDQGRLTNAQGLPLVPG-----IDIPPEAVGITISENGTVSVSTGAGKTLAEVGQLQLA 175 Query: 162 SVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHL 216 G + + + + P E G T+K+G LE SN ++ EM +MI Sbjct: 176 QFVNPAGLLALGGNLYAETVASGAPTESEPGQNGIGTIKQGALEGSNVLAVEEMVEMIAA 235 Query: 217 TQKFNSITTLIDENEKSML 235 + + T ++ + M Sbjct: 236 QRTYEMNTKVLSAADNMMQ 254 >gi|126175145|ref|YP_001051294.1| flagellar basal body rod protein FlgF [Shewanella baltica OS155] gi|125998350|gb|ABN62425.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS155] Length = 247 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYVAMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 TESPSANFRSGPIKTTGRDLDVAIKGDGWFAVQAKDGSEAYTRAGSLSFDSTGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P E ++ + G IS + + + + L + ++ + Sbjct: 119 N-PVMGDAG-PIVLPLPIEKVSISQDGIISVRPQGATAEVVEEVGRLKLVNPGNAE--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V V+ G +E SN N + EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLMSGNIAPADPSVGVESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|117612105|gb|ABK47559.1| flagellar basal-body rod protein FlgF [Shewanella sp. ANA-3] Length = 252 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 15/238 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 I ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 10 LYISMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAMVETP 67 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 + G STG +LD A++GD WFA+++ G TR G G L + G PV Sbjct: 68 SANFRSGPIKSTGRDLDVAIKGDGWFAVQAQDGSEAYTRSGSLSFDSTGLLHNDRGN-PV 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVRRENS 175 + A PI +P E + + G IS + + + + L + +Q + R Sbjct: 127 MGDAG-PIVLPLPIEKVTISQDGIISVRPQGATTEVVEEVGRLKLVNPGNAQ--MMRGED 183 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ + P V V+ G +E SN N + EM +I L ++F ++ E++ Sbjct: 184 GLFRLVSGDPAPADPSVFVESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAEEN 241 >gi|329901231|ref|ZP_08272756.1| Flagellar basal-body rod protein flgF [Oxalobacteraceae bacterium IMCC9480] gi|327549163|gb|EGF33755.1| Flagellar basal-body rod protein flgF [Oxalobacteraceae bacterium IMCC9480] Length = 245 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 12/249 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ ST A+N++N T GFR F V ++ +FV Sbjct: 1 MDRMIYTAMTGAKHVMEQQSTTANNLANATTTGFRAQLDTFRAV--PVQGPGLATRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A++G W A++ P G TR G KV ++G L + G Sbjct: 59 DSTVGADFSQGALQQTGRALDVAIQGKGWLAVDMPDGTEAYTRHGSLKVNENGLLQTQGG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRE 173 V D PI IP D +G+ G +S G+ + + V+ + + R Sbjct: 119 LNIVGDSG--PITIPP-DVNVTIGKDGTVSSVESGSKPGQAVIIGRIKLVNPPEETMTRG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + P +E VT+ G LE SN N + M MI L+++F +L+ E + Sbjct: 176 DDTLFRVKTPGGVEADPNVTLAEGALESSNVNVVDAMVNMISLSRQFEMHMSLLKNAETN 235 Query: 234 MLEAIRNIA 242 +A + +A Sbjct: 236 STKAAQILA 244 >gi|149191155|ref|ZP_01869413.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148834993|gb|EDL51972.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 261 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 109/265 (41%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ I A + +++ +++N++N +TVGF+ +V F ++ ++ Sbjct: 1 MHSALWISKTGMAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSVDKQAGTETTELN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V G+ +T + D A+ GD +F +E+ G + TR+G+F Sbjct: 61 EHPTGIQLGNGVRVVGTEKVFTQGNVQNTNQQFDLAILGDGFFQIENSDGELLYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG LV+ G YP++ I IP + + ++ G + + + + + Sbjct: 121 QTNSDGQLVNTQG-YPLIPE----IVIPPEATLVSITADGVATATIPGQVNPEALGQITI 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + + + +E ++G +K+G LE SN + EM MI Sbjct: 176 VKFMNPAGLAAQGGNLFAETEGSGEAVELVAGTEGSGQLKQGALEGSNVQVVEEMVDMIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ + + Sbjct: 236 TQRAYEMSAKMVSAADEMLQYIAQQ 260 >gi|116250482|ref|YP_766320.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. viciae 3841] gi|115255130|emb|CAK06204.1| flgG [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 102/259 (39%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +FS+++ + N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V + G TG +LD AL G +F ++S G + +R G F Sbjct: 61 VVPEGANIGLGVQTSAVRNLHLQGELTQTGNDLDVALIGKGFFQIQSTDGTTLYSRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 D G LV+ G Y VL I IP + G++S + + + L Sbjct: 121 NKNDQGQLVTIDG-YEVLPG----ITIPTGSTELTISRSGQVSAKLPGATEATELGQLTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ + P E+ +K+G+LE SN + + E+ ++I Sbjct: 176 ADFVNEAGLQPLGDNLFQETPASGEAVIGNPDEEGF-AYMKQGYLESSNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 235 SAQRAYEMNSKVITTADEM 253 >gi|330830301|ref|YP_004393253.1| flagellar basal body rod protein FlgG [Aeromonas veronii B565] gi|328805437|gb|AEB50636.1| Flagellar basal body rod protein FlgG [Aeromonas veronii B565] Length = 262 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 109/265 (41%), Gaps = 29/265 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S ++N++N TVGF+ + F +++ N + S Sbjct: 1 MNPALWISKTGLDAQQTNISVTSNNLANASTVGFKKSRAIFEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F Sbjct: 61 ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + D+G++V+ YP+ IQIP+ + VGE G++S + +V+ + + Sbjct: 121 TLNDEGTIVTPGNGYPLQPE----IQIPENAQSVTVGEDGQVSVQLKGDGASQVVGQINI 176 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 + G + + +K+G LE SN N E+ +I Sbjct: 177 SDFVNASGLQPMGENMFVETQSSGAAAQGTAGADGLGVIKQGMLETSNVNVTEELVNLIQ 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + ++ + M I+ Sbjct: 237 AQRVYEMNSKVLSAVDGMMSFLIQR 261 >gi|84388092|ref|ZP_00990988.1| polar flagellar FlgF [Vibrio splendidus 12B01] gi|84377159|gb|EAP94029.1| polar flagellar FlgF [Vibrio splendidus 12B01] Length = 249 Score = 211 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + + F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM--QAYGEGMPTRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS ++TG +LD ++GD W ++ G LTR+G KV +G L +ASG Sbjct: 59 TERPGHNFAQGSVVTTGRDLDVTIQGDGWISVMDNTGREGLTRNGNLKVDQNGLLTNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + ++ + L D Q + Sbjct: 119 -HLVLGENDAPITLPIPISKVEIGTDGTISVIPQGAPAEELAIVDRIKLVRPDN-QSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E + VT+ +G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRSKNPDQAYEADAAVTLLKGAIEGSNVNAVGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|91792666|ref|YP_562317.1| flagellar basal body rod protein FlgG [Shewanella denitrificans OS217] gi|91714668|gb|ABE54594.1| Flagellar basal-body rod FlgG [Shewanella denitrificans OS217] Length = 262 Score = 211 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 107/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +++N++N T+G++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTIGYKKSRAVFEDLLYQTVNQAGGISADNT 60 Query: 54 --QKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKMFSQGNMLTTDNSLDLMIEGPGFFEVQLPDGTPAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D G +V+ Y + I IP+ V GE+S + +VI + + Sbjct: 121 SLDDTGQIVTPGSGYVLQPA----ITIPENATGITVSAGGEVSVKIPGTAESQVIGQITM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPLGQNLYTETGASGTPIQGTASLDGLGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 QSQRIYEMNSKVISAVDQMLAYINQNL 262 >gi|153834440|ref|ZP_01987107.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01] gi|156973588|ref|YP_001444495.1| flagellar basal body rod protein FlgF [Vibrio harveyi ATCC BAA-1116] gi|269961600|ref|ZP_06175962.1| flagellar basal-body rod protein FlgF [Vibrio harveyi 1DA3] gi|148869136|gb|EDL68168.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01] gi|156525182|gb|ABU70268.1| hypothetical protein VIBHAR_01291 [Vibrio harveyi ATCC BAA-1116] gi|269833641|gb|EEZ87738.1| flagellar basal-body rod protein FlgF [Vibrio harveyi 1DA3] Length = 249 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD +EG W ++ G LTR+G KV +G L +ASG Sbjct: 59 TERPGHNFAQGSVITTGRDLDITVEGSGWISVMDQTGKEGLTRNGNLKVDQNGLLTNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + V+ + L D Q + Sbjct: 119 -HVVLGENDAPITLPIPVSKIEIGRDGTISVLPQGAPAEELEVVDRIKLVRTDD-QNLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P P E ++++ G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRHKTPNQPYEADGSISIQTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|42526518|ref|NP_971616.1| flagellar basal body rod protein FlgG [Treponema denticola ATCC 35405] gi|41816711|gb|AAS11497.1| flagellar basal-body rod protein FlgG [Treponema denticola ATCC 35405] gi|325473456|gb|EGC76651.1| flagellar basal-body rod protein FlgG [Treponema denticola F0402] Length = 264 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 98/266 (36%), Gaps = 34/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + TVA+N++N +T GF+ + +F +++ + Sbjct: 1 MVRSLWTAATGMNTQQANIDTVANNLANVNTSGFKKQRAEFEDLIYQTVKTAGTPATEDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 E GS +TG D A++G+ +F + G TRDG F Sbjct: 61 ITPVGVQMGHGARLAATQRIFEQGSLQNTGVTSDIAIQGEGFFRVLQYDGTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQ------KGKVIATM 158 K+ D LV+++G + I P+ + V G ++ + + Sbjct: 121 KIDADRQLVTSNGLRVL-----PEIIFPEGYRENTIAVSRDGRVTVKVGDIDDPIEVGQI 175 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY + G ++ IP P G T + FLE SN +++ EM Sbjct: 176 ELYRFQNNAGLSAEGSNLFRQTPASGTAIPGRPGFTGFGRT-EHKFLEMSNVSTVSEMVN 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + + I ++ + A+ Sbjct: 235 MIVAQRAYEFNSKAIQTSDNMLGTAV 260 >gi|323703177|ref|ZP_08114830.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] gi|323531836|gb|EGB21722.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] Length = 256 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 110/254 (43%), Gaps = 16/254 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--------DI 52 M S G++ + R+ V +N++N +T GF+ +V F + + + Sbjct: 1 MIRSLYSGVSGLKNHQIRMDVVGNNIANVNTNGFKASRVNFQDAISQTMRSASGTPAINP 60 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 Q + V G ++ G +TG LD A++G+ +F L TR+G F + + Sbjct: 61 SQIGTGVKVGGISINAGQGPLQNTGRTLDLAIQGNGYFILTDGTNKYYTREGTFFIDINN 120 Query: 113 SLVSASGKYPVLDMASVPIQI-PQKDEIFNVGEKGEISQKGKVI--ATMGLYSVDMSQGF 169 +L+++ G V D + I + ++ ++GEI GK +G+ + + G Sbjct: 121 NLINSDG-LQVCDTSGKAITLQTTPVNTISINDQGEIFVNGKTTSEGQVGIATCNNPAGL 179 Query: 170 VRRENS----GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R N+ ++ P +G T+ G+LE SN + EM MI + + + Sbjct: 180 ERVGNNLYKESLASGTPTPGTARAAGSTINSGYLEMSNVDLTEEMTNMITTQRGYQANAR 239 Query: 226 LIDENEKSMLEAIR 239 +I ++ + E I+ Sbjct: 240 VITVSDTLLEELIQ 253 >gi|317406199|gb|EFV86448.1| flagellar basal-body rod protein FlgG [Achromobacter xylosoxidans C54] Length = 261 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 99/266 (37%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + + +++N++N T GF+ + F +++ ++ Sbjct: 1 MMRSLWIAKTGLEGQQTSMDVISNNLANVATNGFKRGRAVFQDLMYQTLRQPGAQVGDAT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + E G +TG ELD A+ G + +E P G TRDG Sbjct: 61 QLPSGLQLGTGARVAATERIHTTGGLNNTGGELDVAINGRGFLQVELPDGTQAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------GKVIATMG 159 + +G L + SG + P+ +P ++G+ G +S I + Sbjct: 121 QRDQNGQLTTVSGY-----VIQPPMNVPDNALSISIGKDGIVSVTQPGAAGVNVQIGQLQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + + G + E P P D +G T + ++E SN N E+ M Sbjct: 176 IATFINPTGLQSVGENLYLETDASGPANLLQPGVDGAG-TFMQNYVETSNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + +++ + + Sbjct: 235 ITTQRAYEMNSKAVKTSDEMLARLTQ 260 >gi|326319098|ref|YP_004236770.1| flagellar basal-body rod protein FlgF [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375934|gb|ADX48203.1| flagellar basal-body rod protein FlgF [Acidovorax avenae subsp. avenae ATCC 19860] Length = 246 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 11/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A QR + +A+N++N T GFR F V ++ D + F Sbjct: 1 MDHIIYTSMTGASAAAQRQAVLANNLANASTNGFRAEMSTFRSV--PVQGDGSKTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G TG LD G+AWFA++ G TR+G F+V +G L +++G Sbjct: 59 EATSGHVETPGPVQRTGRNLDAMAVGNAWFAVQGLDGTEAYTRNGSFEVNAEGQLRTSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 VL PI +P +G G I+ Q+ I + L + + ++R + Sbjct: 119 -LTVLSDGGGPIDVPPGA-DVTLGSDGTITARVAGQQPTPIGRLKLAT-PTPEDPLKRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + P+ + + G LE SN N++ M MI +++F + L+ E + Sbjct: 176 DALFRTASGDPMPNDPNARLLSGALEGSNVNAVESMVGMIAASRQFEAQMRLLQTTENND 235 Query: 235 LEAIR 239 A + Sbjct: 236 KTAAQ 240 >gi|74317651|ref|YP_315391.1| flagellar basal body rod protein FlgF [Thiobacillus denitrificans ATCC 25259] gi|74057146|gb|AAZ97586.1| flagellar basal body rod protein FlgF [Thiobacillus denitrificans ATCC 25259] Length = 246 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 12/246 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ +T + N++N T GFR +F V ++ I +FV Sbjct: 1 MDRLIYTAMTGAKHALEQQATTSHNLANATTTGFRAQIDQFRAV--PVQGAILPTRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ TG ELD A++GD W A+++P G TR+G K+ ++G L++ G Sbjct: 59 DSTTGSDFRSGAIQHTGRELDMAVQGDGWIAVQAPDGSEAYTRNGSLKLDENGVLLTRDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS------VDMSQGFVRRE 173 V+ P+ IP VG+ G IS A GL S V+ G + R Sbjct: 119 -LQVMGDGG-PLSIPPG-RNVAVGKDGTISLVPDGSAATGLTSIGRMKLVNPPAGDLVRG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + G+ + V + G LE SN N + EM MI L ++F+ L+ E + Sbjct: 176 DDGLFRLKDGGAADVDPKVALIGGALESSNVNVVDEMVNMISLARQFDMHMKLLQHAENN 235 Query: 234 MLEAIR 239 +A + Sbjct: 236 DSKAAQ 241 >gi|294140187|ref|YP_003556165.1| flagellar basal-body rod protein FlgG [Shewanella violacea DSS12] gi|293326656|dbj|BAJ01387.1| flagellar basal-body rod protein FlgG [Shewanella violacea DSS12] Length = 262 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 109/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +++N++N T+G++ + F +++ N Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTIGYKKSRAVFEDLLYQTVNQAGGISASNT 60 Query: 54 --QKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSLDMMIEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D G +V++ Y V I IP V +GE+S + +V+ + + Sbjct: 121 TLDDTGQMVTSGSGYVVQPA----ITIPDNATSITVSAEGEVSVKTPGTIENQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPMGQNLYLETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLSYVNQNL 262 >gi|317153845|ref|YP_004121893.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316944096|gb|ADU63147.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 257 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 20/258 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M+ S L L+ E R+S++A+N++N +T F+ + F +V +D Sbjct: 1 MRDSSLSALFGALSNEMRMSSIANNLANVNTTAFKKDHMAFHDVFTRFAHDYVVTTKSFL 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 + ++ + + G TG +LDFAL G+ +F + + TR G Sbjct: 61 RDQDLFPDPKIMAKARLSDQTVDFSQGGMHQTGNQLDFALSGEGFFKAQVGGDELYTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F V DG+LV+ G +PV+ P+ +P + V G IS G+ L + + Sbjct: 121 NFLVDVDGTLVTQDG-HPVMVEGG-PLSVPPGA-VMTVESDGMISINGEPAGAFDLVTFE 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 G R ++ E +TV++GFLE N + EM QMI + F+ Sbjct: 178 DLGGMERVGSNFYRAPGDAAEAE-PEDLTVQQGFLEKGNVEVVTEMVQMIETQRAFDMYA 236 Query: 225 TLIDENEKSMLEAIRNIA 242 ++ + I + Sbjct: 237 KVLQGTDSLDRNMITKVG 254 >gi|212637787|ref|YP_002314312.1| flagellar basal body rod protein [Shewanella piezotolerans WP3] gi|212559271|gb|ACJ31725.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 261 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 118/265 (44%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ++ + A + +++T+A+N++N +T GF+ +V F+++ ++ ++ Sbjct: 1 MQSALWVSKTGLTAQDTKMTTIANNLANVNTTGFKRDRVAFNDLFYQVQRQPGGQVDEQN 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + + G ++T +LD A+EG +F +E G + +RDG+F Sbjct: 61 ELPSGLQLGTGTRVVGTQKVFTSGDMLTTNQQLDLAIEGQGFFQIEESNGDLSFSRDGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +G +V++ G V I+IP++ + G +S + + + L Sbjct: 121 YRNSEGLMVTSQGLPLV-----PNIEIPEEALTITIATDGIVSAQMAGQADAQELGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G R N+ +E ++G +++G LE +N N + EM +MI Sbjct: 176 VNFTNPAGLEARGNNLYRETGASGAAIEGVAGDQALGQIRQGALEGANVNVVEEMVEMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + ++ ++ ML+ + Sbjct: 236 TQRAYEMNAKVVSASDD-MLKFLNQ 259 >gi|86146154|ref|ZP_01064480.1| polar flagellar FlgF [Vibrio sp. MED222] gi|218708805|ref|YP_002416426.1| flagellar basal body rod protein FlgF [Vibrio splendidus LGP32] gi|85836101|gb|EAQ54233.1| polar flagellar FlgF [Vibrio sp. MED222] gi|218321824|emb|CAV17794.1| Flagellar basal-body rod protein flgF [Vibrio splendidus LGP32] Length = 249 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L ++N++N T GFR + + + F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRSNNLANVSTTGFRADLAQARSM--QAYGEGMPTRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS ++TG +LD ++GD W ++ G LTR+G +V +G L +ASG Sbjct: 59 TERPGHNFAQGSVVTTGRDLDVTIQGDGWISVMDNTGREGLTRNGNLRVDQNGLLTNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + V+ + L D Q + Sbjct: 119 -HLVLGENDAPITLPIPISKVEIGTDGTISVIPQGAPAEELAVVDRIKLVRPDN-QSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E + VT+ +G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRSKNPDQAYEADAAVTLLKGAIEGSNVNAVGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|158422258|ref|YP_001523550.1| flagellar basal body rod protein FlgG [Azorhizobium caulinodans ORS 571] gi|158329147|dbj|BAF86632.1| flagellar basal-body rod FlgG protein [Azorhizobium caulinodans ORS 571] Length = 262 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 105/265 (39%), Gaps = 32/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + + +A+N++N +T GF+ + +FS+++ + Sbjct: 1 MRALAIAATGMNAQQTNVEVIANNIANINTTGFKRARAEFSDLLYQSERTQGIPNRDGGQ 60 Query: 54 --QKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + + G + G TG LD A+ G F + +P G + TR G F Sbjct: 61 AIPEGAMLGLGVRTVGIRNLHTQGPLTQTGNTLDLAVNGRGMFEITTPDGQTVYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G LV++ G + + IQ P V E G++ +++ + L Sbjct: 121 NRSATGQLVTSDGY-----VINPAIQFPNNATEIQVNESGQVYATIPNQTNPQLLGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G N+ P+ ++G +++G+LE SN + + E+ ++I Sbjct: 176 VNFANESGMEPLGNNLYRETLASGQPIVGVAGDVGFGKIQQGYLEASNVDPVKEITELIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ M + + Sbjct: 236 AQRSYEMNSKVIQAADE-MSKTVST 259 >gi|269103189|ref|ZP_06155886.1| flagellar basal-body rod protein FlgF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163087|gb|EEZ41583.1| flagellar basal-body rod protein FlgF [Photobacterium damselae subsp. damselae CIP 102761] Length = 249 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 15/243 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + L A+N++N T GFR ++ + + A + ++ F Sbjct: 1 MDRALYLAMNGAQQDMLGLQVRANNLANVSTTGFRAD-LEQARSMQAYGEGVPDRV-FTM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD A+EGD W A++ G TR G K+ G L +++G Sbjct: 59 AERPGYNFTQGSVITTGRDLDVAVEGDGWLAVQDASGNEAYTRAGHLKIDQTGMLQNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI IP +G G IS + I + L D Q + Sbjct: 119 QL-VLGQNDSPIFIPLPISKIEIGRDGTISVLPQGAPPEAMAQIDRIKLVKTDNHQ--LF 175 Query: 172 RENSGISPNIPPT-PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 ++ G+ P + + + + G LE SN N++ EM +I L + F L+ Sbjct: 176 KDADGLFKFKGGQEPQQADASIRLLNGTLEGSNVNAVGEMTALIDLQRHFEMQVKLMKTA 235 Query: 231 EKS 233 E+ Sbjct: 236 EEM 238 >gi|239828563|ref|YP_002951187.1| flagellar basal body rod protein [Geobacillus sp. WCH70] gi|239808856|gb|ACS25921.1| flagellar basal body rod protein [Geobacillus sp. WCH70] Length = 278 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 39/278 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV------------ 45 M F + +A ++R+ +N++N +T G+++ + F E++ Sbjct: 1 MLRGFYTAASGMMAQQRRIEMWTNNIANANTPGYKSDQAALRAFPELLLSRLDKATVPTK 60 Query: 46 ----GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDA 88 ++ I + V + + G TG D AL EG Sbjct: 61 TPRSFPLQPTIGSINTGVYMQELIPNFRQGDIKETGQPTDIALINGTLPVDAETGKEGTL 120 Query: 89 WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +F +++ G I TR+G F + G L + G Y VLD IQ+P F V G Sbjct: 121 FFIVQNENGDIRYTRNGNFTLNPQGFLTTNDGWY-VLDENGRRIQLP--STNFAVNADGT 177 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNA 204 I IA + + V+ N P + T+K+GFLE +N Sbjct: 178 IVANNTRIARINIAFAANPNTLVKEGNGLFRSENGVLPSALGNPNITYTLKQGFLERANV 237 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + M +M+ + F + ++ ++SM +A+ I Sbjct: 238 DLNRAMTEMLSAYRAFEANQKIVQAYDRSMDKAVNEIG 275 >gi|312126441|ref|YP_003991315.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] gi|311776460|gb|ADQ05946.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] Length = 255 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 108/258 (41%), Gaps = 21/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV----GAIKNDID 53 M + + ++ + A+N+ N T GF+ + F ++ + D Sbjct: 1 MIRGIYTSASGMILNQKLMDITANNVGNVSTTGFKRDVAQVESFRNMLAYRIYDKPSSPD 60 Query: 54 QKISFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-----IILTRDG 104 I +++ G + G +I T L+ A+ G+ +FA+E P I+ TR+G Sbjct: 61 NAIGYMSLGSDVSRIVSDFSQGLYIKTDEPLNLAIRGNGFFAVEMPNNQGAQQILYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + G LV+ G Y VL I + Q + E+G + Q G+ + + + Sbjct: 121 AFTLNSRGELVTLDGFY-VLGQNGR-IVL-QNGGQVRIDEQGNVYQDGRFVDRLRVVDFQ 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 Q + N+ + + + +G+LE SN NS+ EM MI++ + + + Sbjct: 178 DKQLLRKVGNNLFEADALSQSIP--FSGKIIQGYLEGSNVNSVQEMVNMINVLRAYEANQ 235 Query: 225 TLIDENEKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 236 KAFVIQDETLQKAVNEIA 253 >gi|241203106|ref|YP_002974202.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856996|gb|ACS54663.1| flagellar basal-body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 262 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +FS+++ + N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFSDLLYQTERAKGVANRANQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V + G TG +LD AL G +F ++S G + +R G F Sbjct: 61 VVPEGANIGLGVQTSAVRNLHLQGELTQTGNDLDVALIGKGFFQIQSTDGTTLYSRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 D G LV+ G Y VL I IP + G+++ + + + L Sbjct: 121 NKNDQGQLVTIDG-YEVLPG----ITIPTGSTELTISRSGQVTAKLPGATEATELGQLTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ + P E+ +K+G+LE SN + + E+ ++I Sbjct: 176 ADFVNEAGLQPLGDNLFQETPASGEAVIGNPDEEGF-AYMKQGYLESSNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 235 SAQRAYEMNSKVITTADEM 253 >gi|23015788|ref|ZP_00055555.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 261 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 111/266 (41%), Gaps = 32/266 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S NI LA + + +++N++N +T F + +F++++ + + S Sbjct: 1 MRSLNIAATGMLAQQTNVEVISNNIANMNTTAFTRRRPEFADLLYQNLRRVGSQSSDTGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y E GS ST LD A++G +F ++ P G TRDG F Sbjct: 61 IVPTGVQLGLGVKTTAVYRITEQGSVQSTDNTLDMAVQGKGYFQIKLPSGETAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 +++ +G++V+ G Y V+ + IP V G++ + ++ + L Sbjct: 121 QLSPEGTIVTHEG-YQVIPQ----VTIPSDAVGVTVDSTGQVIVKQDGQVQSQIKGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G R + P+ G T+ +GFLE SN N + E+ +I Sbjct: 176 ATFANDAGLEARGGNLFMETPASGQPVVQTPGKPGFGTILQGFLETSNVNVVAEVTNLIG 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I +++ ML I + Sbjct: 236 AQRAYEMNSKVIQASDE-MLSTINQM 260 >gi|172057880|ref|YP_001814340.1| hypothetical protein Exig_1871 [Exiguobacterium sibiricum 255-15] gi|171990401|gb|ACB61323.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sibiricum 255-15] Length = 278 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 105/276 (38%), Gaps = 38/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S G++ + +L V +N++N +T G++ +V F ++V Sbjct: 1 MLRSMYSGISGLKNFQTKLDVVGNNIANVNTFGYKKGRVTFKDLVSQSVGSASGNGGGVG 60 Query: 54 -----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 Q + G+ +TG LD A+ G+ +F +++ GI R G F Sbjct: 61 GANPKQVGLGASMATVDSVSNQGALQNTGRTLDVAISGEGFFQIQTADGIRYARSGNFYT 120 Query: 109 TDDGSLVSASGKYPVLDMASVP--------------IQIPQKDEIFNVGEKGEIS----- 149 DG+LV+ G Y + + P I IP + ++G+ G ++ Sbjct: 121 DLDGNLVTGDGNYVIGSDNAGPLGQPTIPLGGGYKTINIPANAQNLSIGKDGLVTYVDPA 180 Query: 150 QKGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSN 203 + + L + G + ++ TP + G + G LE SN Sbjct: 181 GTLQQAGYISLANFPNPGGLEKSGSNMYSISQNSGQPTSATPSTNGLG-QLTSGTLEMSN 239 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E +MI + F + T +I +++ + E + Sbjct: 240 VDLSEEFTEMIIAQRGFQANTRIITTSDQILEELVN 275 >gi|209545588|ref|YP_002277817.1| flagellar basal body rod protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533265|gb|ACI53202.1| flagellar basal body rod protein [Gluconacetobacter diazotrophicus PAl 5] Length = 247 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 120/247 (48%), Gaps = 8/247 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M+ + I L+ L + L A+N++N +T GF+ K FS+ + K+ D++ Sbjct: 1 MENTTYIALSRVDVLSRALEVTANNLANANTDGFKASKELFSDYLVQQKDVHGLPGDKEE 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + Y + G+ TG DFA+ G+ +FA+ + +G+ LTR+G F DG++V Sbjct: 61 VYTQDRSTYQDRLQGALRQTGNLTDFAINGEGYFAVRTTQGVRLTRNGEFNRRADGTIVD 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 SG P++D + IP +D +V G +S + +AT+ L +VD V Sbjct: 121 GSGN-PLIDRNGNNVVIPPRDHTLSVASDGTMSTETGRVATLDLVTVDNPNTLVPEGGYL 179 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + P TP +++ +++G LE SN N++ E QM+ + + ++ LI Sbjct: 180 LRPT---TPTRNVANKEIRQGMLESSNVNAVSETTQMVEIQRDYDLTFQLIQTESTRQSN 236 Query: 237 AIRNIAS 243 AI I + Sbjct: 237 AIDKITA 243 >gi|170725957|ref|YP_001759983.1| flagellar basal body rod protein FlgG [Shewanella woodyi ATCC 51908] gi|169811304|gb|ACA85888.1| flagellar basal-body rod protein FlgG [Shewanella woodyi ATCC 51908] Length = 262 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S +++N++N TVG++ + F +++ N + Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V +G + ++ + G+ ++T LD +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNVGAGTKVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 + D G +V++ Y V I IP+ V +GE+S K +V+ + + Sbjct: 121 TLDDTGQIVTSGSGYVVQPA----ITIPENATGITVSAEGEVSVKTAGTAESQVVGQLTM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G V++G LE SN N E+ +I Sbjct: 177 SDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-VRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLSYVNQNL 262 >gi|149908757|ref|ZP_01897418.1| putative flagellar basal-body rod protein [Moritella sp. PE36] gi|149808299|gb|EDM68238.1| putative flagellar basal-body rod protein [Moritella sp. PE36] Length = 261 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 30/260 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ A + ++S +A+N++N +T GF+ +V FS++ IK Sbjct: 1 MSSALWTSKTGLAAQDVKMSIIANNLANVNTTGFKKDRVAFSDLFYDIKRQPGALADQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V GSF TG ELD A+ G +F +E G I TR+G+F Sbjct: 61 EIPTGVQVGNGVRVTGTQKVFTPGSFADTGQELDMAIIGKGFFQVEQVSGEIAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + D +V++ G V IQIP +G G I+ + + + + L Sbjct: 121 TLNSDSQIVNSDGLPLV-----PSIQIPADATSITIGSDGTITAQLAGESAPQDVGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIH 215 S G V + + ++ +K+ LE SN + + EM MI Sbjct: 176 ASFANPAGLVALGGNLYTETGSSGAAQEGVAGEASLGQIKQRGLEGSNVSVVEEMVDMIS 235 Query: 216 LTQKFNSITTLIDENEKSML 235 + + ++ +K + Sbjct: 236 TQRAYEMNAKVVSAADKMLQ 255 >gi|119469952|ref|ZP_01612757.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Alteromonadales bacterium TW-7] gi|119446662|gb|EAW27935.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Alteromonadales bacterium TW-7] Length = 262 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 109/266 (40%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S +++N++N TVG++ + F +++ N + S Sbjct: 1 MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60 Query: 58 ------FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + + + G+ ++T LD+ + G +F + P G I +R+G+F Sbjct: 61 EMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQPDGNIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 DG +V++ Y V + +P + + + GE+S VI + + Sbjct: 121 TTDGDGRIVTSGSGYVVQPE----MNVPDDAQSITISQDGEVSVRISGQADNVVIGQLTI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + + + P++ GV T+ +G LE SN N E+ +I Sbjct: 177 SDFINPSGLEPVGQNLYTETAVSGAPVQGNPGVEGLGTIIQGSLETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ M + + Sbjct: 237 TQRIYEMNSKVISAVDEMMSYINQQL 262 >gi|312621331|ref|YP_004022944.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] gi|312201798|gb|ADQ45125.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] Length = 255 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 21/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----------EVVGAIK 49 M + + ++ + A+N++N T GF+ + + V + Sbjct: 1 MIRGIYTSASGMILNQKLMDLTANNVANVSTTGFKRDVAQIESFRNMLVYRIYDKVTSPD 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-----IILTRDG 104 N I + G +I T L+ A++GD +F +E P I TR+G Sbjct: 61 NAIGYMSLGADVSRIVSDFSQGLYIKTDEPLNLAIKGDGFFTIEVPENQGAQQIFYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F + G LV+ +G Y VL I + Q + E+G + Q G+++ + + Sbjct: 121 AFTLNSRGELVTLNGFY-VLGQNGR-IVL-QNGGQVRIDEQGNVYQNGRIVDRLRVVDFQ 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + N+ + + V +G+LE SN NS+ EM MI++ + + + Sbjct: 178 DKSLLRKVGNNLYEADATVQQIP--FSGKVLQGYLEGSNVNSVQEMVNMINVLRAYEANQ 235 Query: 225 TLIDENEKSMLEAIRNIA 242 ++++ +A+ IA Sbjct: 236 KAFVIQDETLQKAVNEIA 253 >gi|269792758|ref|YP_003317662.1| hypothetical protein Taci_1148 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100393|gb|ACZ19380.1| protein of unknown function DUF1078 domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 263 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 108/263 (41%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---F-SEVVGAIKNDIDQKI 56 M G +A L E+ L V +N++N DT GFR F E++ I+ +D + Sbjct: 1 MFRGIYAGTSAMLVQEKMLDVVGNNLANVDTSGFRARIAVNKSFPEELMDRIERSMDPVV 60 Query: 57 --SFVASGK--------------EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-II 99 F G+ + +G+ TG LD A+EG+ +F ++ G Sbjct: 61 KEGFAPGGRIPIGVLSLANVLHETAMRTTMGALERTGAPLDLAIEGEGFFVVQDGAGNTF 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 TR G F+ + G +V+ G + D PI+I + ++ VGE G++ G+ + T+ Sbjct: 121 YTRSGHFQRNEQGQVVTHEGMLLLGD--GGPIEIGEGTQVL-VGEDGQVFVDGEAVGTVR 177 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + S ++ ED+ + GFLE SN N + EM +MI + Sbjct: 178 VVRFQTPSRLRNVGKSLLAETQESGAPEDVEAPKLAVGFLERSNVNVVEEMTKMIEANRA 237 Query: 220 FNSITTLIDENEKSMLEAIRNIA 242 + + + ++ + Sbjct: 238 YEAAAKTVTIQDELSSRLSNSFG 260 >gi|77918760|ref|YP_356575.1| flagellar basal body rod protein FlgG [Pelobacter carbinolicus DSM 2380] gi|77544843|gb|ABA88405.1| flagellar biosynthesis protein [Pelobacter carbinolicus DSM 2380] Length = 261 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 106/267 (39%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M + A + + +A N++N ++ GF+ + F +++ + + Sbjct: 1 MIRALWTSATGMEAQQVNMDVIAHNLANVNSAGFKKSRADFQDILYQTVKVAGSDGSSGV 60 Query: 53 DQKISF-VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 +Q S V G + G F TG +LD A+EG +F + G TR G F Sbjct: 61 EQPTSIQVGLGSRVAAIQKVFTTGDFQQTGNDLDIAIEGSGFFEITLANGDTAYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K G +V++ G YP+ S I IP+ ++G G + I T+ L Sbjct: 121 KKDGTGRIVTSDG-YPL----SPEIIIPENATQVSIGNYGAVEVLLDGQNTPTQIGTITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ + P ED G ++ +GFLE SN + M EM MI Sbjct: 176 TRFSNPAGLNSIGHNLFTETPTTGTPVTGNPGEDGFG-SLSQGFLEGSNVSIMEEMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ ML+ N+ Sbjct: 235 AGQRAYEINSKAIKTADE-MLQMTNNL 260 >gi|212634350|ref|YP_002310875.1| flagellar basal body rod protein FlgG [Shewanella piezotolerans WP3] gi|212555834|gb|ACJ28288.1| Flagellar basal-body rod protein FlgG [Shewanella piezotolerans WP3] Length = 262 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S +++N++N TVGF+ + F +++ N + Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGFKKSRAVFEDLLYQNVNQAGGVSASNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ ++T LD +EG +F ++ P G TR G+F Sbjct: 61 KLPNGLNIGAGTQVVATQKVFTQGNMLTTDNSLDLMVEGPGFFEVQMPDGTAAYTRTGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D G +V+ Y V I IP V +GE+S + +V+ + + Sbjct: 121 SLDDTGQIVTPGSGYVVQPA----ITIPDDATSITVSAEGEVSVKTPGNAENQVVGQLAM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 SDFINPAGLDPMGQNLYMETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLSYVNQNL 262 >gi|91785633|ref|YP_560839.1| flagellar basal body rod protein FlgF [Burkholderia xenovorans LB400] gi|91689587|gb|ABE32787.1| flgF; flagellar basal-body rod protein [Burkholderia xenovorans LB400] Length = 252 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 15/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++N T GFR F V + + + Sbjct: 1 MDRLIYTAMSGSTQALEQQAIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV S G TG LD A++G W A+++ G TR G + ++G LV Sbjct: 61 TFVLSSTPGADYTPGPIQQTGNPLDVAIQGPGWLAVQTADGGEAYTRAGNLHIDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+ VL P+ +P E +G+ G +S V+ L V+ Sbjct: 121 NAT-NQVVLGNGG-PVSVPPGAE-ITIGKDGTVSALTPGDPPTAVVTVDQLKLVNPDPQT 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P + VT+ LE SN N + M MI ++F T L++ Sbjct: 178 MTRGDDGLFRTGDGNPADADPTVTLAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLES 237 Query: 230 NEKSMLEAIRNI 241 +K+ ++ + Sbjct: 238 ADKN-DQSANQL 248 >gi|323204838|gb|EFZ89832.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 255 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 101/256 (39%), Gaps = 32/256 (12%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVA 60 A + + +A+N++N T GF+ + F +++ + S + Sbjct: 5 TGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQIG 64 Query: 61 SGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 +G ++ E G+ T D A++G +F + P G TRDG F+V +G LV Sbjct: 65 TGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLV 124 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGF 169 +A G + V I IP +G G +S + + + L + G Sbjct: 125 TA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGL 179 Query: 170 ------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + E TP + +G+ + +G++E SN N E+ MI + + + Sbjct: 180 ESIGENLYIETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAYEIN 238 Query: 224 TTLIDENEKSMLEAIR 239 + + ++ + + + Sbjct: 239 SKAVSTTDQMLQKLTQ 254 >gi|186477698|ref|YP_001859168.1| flagellar basal body rod protein FlgF [Burkholderia phymatum STM815] gi|184194157|gb|ACC72122.1| flagellar basal-body rod protein FlgF [Burkholderia phymatum STM815] Length = 252 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 15/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++NT T GF+ F V A + D Sbjct: 1 MDRLIYTAMSGATQALEQQAVVANNLANTSTTGFKAQLATFRAVPMAFGDGSTIQDDTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 +FV S G TG LD A++G W ++ +P G TR G V ++G LV Sbjct: 61 TFVLSSTPGADYTPGPIQQTGNPLDVAIQGPGWLSVLTPDGEEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKVIATMGLYS----VDMSQGF 169 +A+ + + +G+ G +S G T+ L V+ + G Sbjct: 121 TAN---NLPVVGGGGPVAVPPGAQVTIGKDGTVSALMPGDPATTIALVDQLKLVNPAPGA 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++R + G+ P + V V G LE SN N + M MI ++F T +I+ Sbjct: 178 LKRGDDGLFHTNDGNPADADPAVVVAAGALEGSNVNPVSAMVSMITNARQFQMQTKMIES 237 Query: 230 NEKSMLEAIRNI 241 +++ ++ + Sbjct: 238 ADQN-EQSANKL 248 >gi|120613060|ref|YP_972738.1| Fis family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591524|gb|ABM34964.1| transcriptional regulator, Fis family [Acidovorax citrulli AAC00-1] Length = 246 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 11/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A QR + +A+N++N T GFR F V ++ D + F Sbjct: 1 MDHIIYTSMTGASAAAQRQAVLANNLANASTNGFRAEMSTFRSV--PVQGDGSKTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G TG LD G+AWFA++ G TR+G F+V +G L +++G Sbjct: 59 EATSGHVETPGPVQRTGRNLDAMAVGNAWFAVQGLDGTEAYTRNGSFEVNAEGQLRTSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 VL PI +P +G G ++ Q+ I + L + + ++R + Sbjct: 119 -LTVLSDGGGPIDVPPGA-DVTLGSDGTLTARVAGQQATPIGRLKLAT-PTPEDPLKRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + P+ + + G LE SN N++ M MI +++F + L+ E + Sbjct: 176 DALFRTASGDPIPNDPNARLLSGALEGSNVNAVESMVGMIAASRQFEAQMRLLQTAETND 235 Query: 235 LEAIR 239 A + Sbjct: 236 KTAAQ 240 >gi|326796595|ref|YP_004314415.1| flagellar basal-body rod protein FlgG [Marinomonas mediterranea MMB-1] gi|326547359|gb|ADZ92579.1| flagellar basal-body rod protein FlgG [Marinomonas mediterranea MMB-1] Length = 261 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 103/267 (38%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 MQT+ A++++LS +++N++N T GF+ + F ++ Sbjct: 1 MQTALWTAKTGLTAMDRQLSVISNNLANVSTTGFKKERAVFENLMYQTLKSPGGLSAQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V + E G + T LD A++G +F + G TRDG F Sbjct: 61 ELPSGLQIGAGVRVTGMQKNFEEGDYNVTDRNLDVAIQGAGFFQITRSDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G +V +SG I +G+ G +S + I ++ + Sbjct: 121 QLNSEGQMVDSSGNLL-----DPQISFDSDVVDITIGDDGTVSVLRAGETDQEEIGSITI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E S I P E+ G + +G LE SN NS+ E+ MI Sbjct: 176 ANFINPAGLYFLGGNLYEETSASGAPIVGVPGEEGLG-ELGQGMLEASNVNSVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I + + + + Sbjct: 235 TTQRAYEMNSKVISTADGMLGFVTQQL 261 >gi|315127351|ref|YP_004069354.1| flagellar basal body rod protein FlgG [Pseudoalteromonas sp. SM9913] gi|315015865|gb|ADT69203.1| flagellar basal body rod protein FlgG [Pseudoalteromonas sp. SM9913] Length = 262 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 110/266 (41%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S +++N++N TVG++ + F +++ N + S Sbjct: 1 MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60 Query: 58 ------FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + + + G+ ++T LD+ + G +F + P G I +R+G+F Sbjct: 61 EMPSGLMLGAGTKVVANQKNFSQGNMLTTENSLDWMISGPGFFEVLQPDGNIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +G +V++ Y V + +P + V + GE+S + VI + + Sbjct: 121 TTDGEGRVVTSGAGYVVQPE----MNVPDDAQSITVSQDGEVSVRIKGQAENVVIGQITI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + + + P++ GV T+ +G LE SN N E+ +I Sbjct: 177 SDFINPSGLEPIGQNLYTETAVSGAPVQGNPGVEGLGTIIQGSLETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ M + + Sbjct: 237 TQRVYEMNSKVISAVDEMMSYINQQL 262 >gi|170748107|ref|YP_001754367.1| flagellar basal body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] gi|170654629|gb|ACB23684.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] Length = 262 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI----- 56 + I A + + +A+N+SN +T F+ + +F +++ + I Sbjct: 1 MRALAIAATGMNAQQLNVEVIANNISNLNTTAFKAARAEFKDLIYQAERPAGVPIQAGES 60 Query: 57 -----SFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + G + G +T LD A+ G WF + P G I TR G F Sbjct: 61 AIPEGAMLGLGVRNTAIRNLHRQGPLNNTTNPLDLAINGRGWFQVTMPNGEINYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 DG LV+A G I IPQ + E G++ Q + I + L Sbjct: 121 NKNADGRLVTAEGY-----SVDPAIIIPQNAIDVVINETGQVMVKVDGQQLPQTIGQLQL 175 Query: 161 YSVDMSQGFVRRENSGI----SPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIH 215 + G N + +P T G +++G+LE SN + + E+ +I Sbjct: 176 ANFTNDAGLEPLGNGLYRETAASGLPVTGFAADPGFGKIQQGYLETSNVDPVREITNLIS 235 Query: 216 LTQKFNSITTLIDENEKS 233 + F + +I ++ Sbjct: 236 AQRAFEMNSKVIQAADEM 253 >gi|94263287|ref|ZP_01287103.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94267694|ref|ZP_01290963.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451896|gb|EAT02627.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456370|gb|EAT06494.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 260 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 96/264 (36%), Gaps = 29/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-------DID 53 M + G + +L T+++N++N +T GF+ + +F ++ D Sbjct: 1 MIRALYSGTTGMRGQQLQLDTISNNLANVNTAGFKKSRTQFEDLYYQELRAVGVENIDGG 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 Q S + G + GS TG++LD A+EG +F + TR G F Sbjct: 61 QVPSGMQVGLGVKATANQKIFTQGSIHETGSDLDIAIEGKGFFQVLKDGEEFYTRAGNFT 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI-----ATMGLYS 162 DG +V+ +G D QIP + ++G G I K + L+ Sbjct: 121 RDADGFIVTQNG-----DRLQPEFQIPPETVSLHIGADGLIQAKDAAQEIIAEDQLTLFD 175 Query: 163 VDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLT 217 G + + P E G + + F E SN E+ +I Sbjct: 176 FINPGGLRAEGGNLFRATEASGDPREADPGTEGVGVLLQRFNEVSNVEVTEELVNLIITQ 235 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + F + + ++ +LE + Sbjct: 236 RAFEMNSKSVQTADQ-LLEVANTL 258 >gi|304409977|ref|ZP_07391596.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS183] gi|307302310|ref|ZP_07582068.1| flagellar basal-body rod protein FlgF [Shewanella baltica BA175] gi|304351386|gb|EFM15785.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS183] gi|306914348|gb|EFN44769.1| flagellar basal-body rod protein FlgF [Shewanella baltica BA175] Length = 247 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYVAMSGAKQNMNELALRANNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++GD WFA+++ G TR G G L + G Sbjct: 59 TESPSANFRSGPIKTTGRDLDVAIKGDGWFAVQAQDGSEAYTRSGSLSFDSTGLLHNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A PI +P E ++ + G IS + + + + L + ++ + Sbjct: 119 N-PVMGDAG-PIVLPLPIEKVSISQDGIISVRPQGATAEVVEEVGRLKLVNPGNAE--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V V+ G +E SN N + EM +I L ++F ++ E Sbjct: 175 RGEDGLFRLMSGNIAPADPSVGVESGAVEGSNVNPVDEMVSLIDLQRQFELQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|330826756|ref|YP_004390059.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans K601] gi|329312128|gb|AEB86543.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans K601] Length = 246 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 11/237 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A R + +A+N++N T GFR F V ++ F Sbjct: 1 MDRIIYTSMTGASAAAHRQAVLANNLANVSTYGFRAEMSSFRSV--PLQGSGSTTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G TG LD G+AWFA++ G TR G F+VT+ G LV+ +G Sbjct: 59 EATSGHVETPGPVQRTGRNLDAMAAGNAWFAVQGLDGTEAYTRAGSFEVTEAGQLVTPTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 PVL PI PQ E +G G ++ Q+ + + + L + +R + Sbjct: 119 -LPVLSDGGAPITAPQGAE-LTLGADGTVTARVPGQQPQTVGRLKLATPAQDDPL-KRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G+ P+ + G LE SN N + M MI ++F L+ E Sbjct: 176 DGLFRTASGEPMASDPAARLLAGALEGSNVNPVESMVGMIAAARQFEQQMRLLQTAE 232 >gi|330818584|ref|YP_004362289.1| flagellar basal body rod protein FlgF [Burkholderia gladioli BSR3] gi|327370977|gb|AEA62333.1| flagellar basal body rod protein FlgF [Burkholderia gladioli BSR3] Length = 250 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 17/252 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--NDIDQKISF 58 M + ++ S +A+N++N T GFR + V ++ +F Sbjct: 1 MDRLIYTAMTGAGQALEQQSVIANNLANASTTGFRAQLATYRAVPMNFGEASNPTTTRTF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 V G TG LD A++G W ++ +P G TR G V ++G LV+A Sbjct: 61 VLDSTPGADYTPGPITRTGNPLDVAVQGPGWLSVLAPDGSEAYTRAGNLHVDENGQLVNA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGF 169 S PV+ PI IP + +G G +S +I + L + D S Sbjct: 121 S-NLPVVGGGG-PIAIPPNAK-VTIGPDGTVSVLAAGDPPSAIAMIDQLKLVNPDPST-- 175 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P + VTV LE SN N + M M+ + F T LI Sbjct: 176 ITRGDDGLFRTTDGNPADADPNVTVAAESLEGSNVNPVAAMVSMLDNARAFQLHTKLIST 235 Query: 230 NEKSMLEAIRNI 241 +++ + I Sbjct: 236 ADQN-EQTANQI 246 >gi|220930463|ref|YP_002507372.1| hypothetical protein Ccel_3100 [Clostridium cellulolyticum H10] gi|220000791|gb|ACL77392.1| protein of unknown function DUF1078 domain protein [Clostridium cellulolyticum H10] Length = 270 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK------NDIDQ 54 M + + A + + +++N++N +T G++ + +F +++ ND + Sbjct: 1 MMRALYTAGSGMKAQQFNVDVISNNLANVNTTGYKKERAEFKDLLYQTMDRAYVLNDAGK 60 Query: 55 KIS-----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK- 107 ++ + E G+ T + LDFA++G+ +F + P+G + TRDG FK Sbjct: 61 PVNLQVGHGTVVSSTVRNFENGTPEQTSSNLDFAIDGEGFFTIMGPQGTVQYTRDGSFKL 120 Query: 108 -VTDDGS--LVSASGKYPVLDMASVPIQIPQKDEI--FNVGEKGEIS---QKGKVIA--- 156 +T+DG L +A G Y VLD + I + I +V +GE+S +G + Sbjct: 121 SITEDGMKKLTTADG-YAVLDNSGEEILFDPEVNISELSVSPRGEMSYKDAEGVSVPMDQ 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPN-IPPTPLE----DLSGVTVKRGFLEDSNANSMYEMG 211 T+G+ N+ S N P++ + + +K+GFLE SN + EM Sbjct: 180 TIGMVIFPNKYALEAVGNNLYSSNSATGEPVQVSEDENAKSIMKQGFLESSNVQVVDEMV 239 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++I + + + I ++ ML+ N+ Sbjct: 240 KLIVAQRAYEVSSKAIQSSDD-MLQIANNL 268 >gi|87306343|ref|ZP_01088490.1| flagellar hook basal body protein flgG [Blastopirellula marina DSM 3645] gi|87290522|gb|EAQ82409.1| flagellar hook basal body protein flgG [Blastopirellula marina DSM 3645] Length = 266 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 30/265 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----------AIKNDI 52 + L+ +L +++N++N +T F+ ++ F ++ N Sbjct: 4 QTLYTAATGMQTLQTKLDVISNNLANVNTTAFKKDRINFEDLFYDNRVLPGKLDGSSNPT 63 Query: 53 DQKI---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 V + G+F T LD+ + G +F + P G TR G F + Sbjct: 64 PTGTHIGMGVRVQSTQTDYQQGAFRETDRSLDWTIRGKGFFQVLDPTGQTYYTRAGNFSI 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYS 162 +G +V+ G V I IPQ V G +S Q + + + L + Sbjct: 124 NANGEIVT--GSAGVGRPLEPSITIPQDTTGIEVSSDGIVSVQRPGQQTLEEVGQIQLAN 181 Query: 163 VDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G ++ ++ S I P D G +V++GFLE SN + E+ +I Sbjct: 182 FINPEGLLKLGDNLYSETNASSAAIVGNPNIDGFG-SVEKGFLEASNVEPVQELVDLITT 240 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + F + + ++ +L+ + N+ Sbjct: 241 QRAFELNSQTVQAGDQ-ILQLVSNL 264 >gi|229825259|ref|ZP_04451328.1| hypothetical protein GCWU000182_00612 [Abiotrophia defectiva ATCC 49176] gi|229790631|gb|EEP26745.1| hypothetical protein GCWU000182_00612 [Abiotrophia defectiva ATCC 49176] Length = 258 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 21/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKND------ 51 M S + ++R+ + +N++N T GF+ + F V+G D Sbjct: 1 MLRSLYTAYTGMVNEQRRMDIMTNNLANATTAGFKMESSSSQSFDRVLGIKIRDVSEAFN 60 Query: 52 ---IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRD 103 I Q V G+ + G+ T + D AL G+ +FA+ TRD Sbjct: 61 DHSIGQMSLGVKVGEVFTDYSQGALRDTAGKYDLALSGEGFFAVRYVDKNGNESTKYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G F++T DG + G L S +++P E +VG G +S +VI + + Sbjct: 121 GNFRLTKDGHVTDVYGNQ--LRTESGVLRVPLDSEDISVGIDGTVSVNNQVIDKIKIVDF 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + ++ + + + E S V +G++E SN NS+ EM +I +T+ + + Sbjct: 179 ENYD-YIEKFGDNLYQTVEGA-TEKESEAQVLQGYIEQSNVNSVREMVNLITITRAYEAG 236 Query: 224 TTLIDENEKSMLEAIRNIA 242 +I ++ M A+ ++ Sbjct: 237 QKMIQSSDSIMESAVNSVG 255 >gi|90418392|ref|ZP_01226304.1| basal body rod protein flgG [Aurantimonas manganoxydans SI85-9A1] gi|90338064|gb|EAS51715.1| basal body rod protein flgG [Aurantimonas manganoxydans SI85-9A1] Length = 262 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 105/258 (40%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + I A + + +A+N++N +T GF+ + +F++++ ++ Sbjct: 1 MRALAIAATGMNAQQTNVEVIANNIANINTTGFKRARAEFTDLLYQVERAQGVAARGGQG 60 Query: 62 GKEYLSK--------------EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ G+ TG +LD AL G+ WF ++ P G I+ TRDG F Sbjct: 61 VVPEGAQLGLGTRLAAIRNLHIQGTLNQTGNKLDLALNGEGWFQVQGPGGEILYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 DG LV+ G I +P V E G++ + + + + L Sbjct: 121 NTNGDGQLVTLDGLLV-----DPAITMPANTSEVIVNESGQVFARVGGAADLEELGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + + G + + I P + G T+++G+LEDSN + + E+ ++I Sbjct: 176 ATFANNAGLAAQGGNLFRETIASGAPTAGVPGDEGYATLQQGYLEDSNVDPVKEISELIS 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 AQRAYEMNSKVISAADEM 253 >gi|39936960|ref|NP_949236.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris CGA009] gi|192292788|ref|YP_001993393.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris TIE-1] gi|39650817|emb|CAE29340.1| putative flagellar basal-body rod protein flgF [Rhodopseudomonas palustris CGA009] gi|192286537|gb|ACF02918.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1] Length = 253 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 126/253 (49%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 M+ + +GL+ Q+ LE+++ VA+N++N +T GF+ + F E + ++ D++ Sbjct: 1 MENALLVGLSRQVVLERQMDVVANNLANLNTNGFKAERSVFQEFLNTGAHEDNFARPDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV Y G+ T LD A++G + +++P+G TRDG + G LV Sbjct: 61 VSFVQDRATYHDLSTGALQETKNPLDVAIDGKGFLVVQTPQGERFTRDGSLTINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVI-----ATMGLYSVDMSQGF 169 + SG +PVL PI I D+ ++ G +S +G I + + + D Q Sbjct: 121 NGSG-FPVLGTGG-PIVIQPTDKELSISPDGRVSVVEGTSIIDSLRGKLRVVTFDRPQSL 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 +++ + + + V++G++E SN NS+ EM +MI +T+ + I+ ++ + Sbjct: 179 IKQGGNLFAATSD--QGTPDTKSMVRQGYVEKSNVNSVLEMTRMIDVTRTYTQISAMLQQ 236 Query: 230 NEKSMLEAIRNIA 242 + AI +A Sbjct: 237 ESELRKTAIEKLA 249 >gi|146305252|ref|YP_001185717.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] gi|145573453|gb|ABP82985.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina ymp] Length = 261 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 112/266 (42%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A ++ +S VA+N++N +T GF++ +V F ++ AI+ Sbjct: 1 MSSALWVSKTGLAAQDKAMSAVANNLANVNTTGFKSDRVVFEDLFYAIELQPGAQADQVN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V GS +TG +D A+ G+ +F +E+P G I T G+F Sbjct: 61 TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIIGNGFFQVEAPNGDIYYTESGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ +G +V+A G V I++P F VG G ++ + + L Sbjct: 121 QLNAEGVIVNAQGLPLVPG-----IEVPAGSSRFTVGSDGIVTAVMAGETLPVELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + TP ED G +K+G LE SN + M MI Sbjct: 176 ANFANPGGLEALGGNLYRETVASGEPVEGTPGEDGLG-NLKQGVLEGSNVQVVEAMVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + + ++D M + + Sbjct: 235 AIQRAYEANAKVLDAAS-GMQQFLNQ 259 >gi|94495409|ref|ZP_01301989.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] gi|94424797|gb|EAT09818.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] Length = 262 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 106/266 (39%), Gaps = 32/266 (12%) Query: 1 MQTS-FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---- 55 M + ++ A ++ +A+N++N +T GF+ + F + Sbjct: 1 MSNAALHVARTGLDAQNTKMRVIANNLANVNTTGFKKDRADFETLAYQQIVQAGANSDAE 60 Query: 56 ---------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 S VA G+ T LD A+EG +F ++ P G I +R G Sbjct: 61 NKFATGLNLGSGVALQGTSKINSQGTLTQTSNALDMAIEGSGYFQVQQPDGSIAYSRAGN 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMG 159 F VT +G++V+ G P++ I +PQ ++G G +S + + + Sbjct: 121 FSVTAEGTIVTGDG-LPLIPQ----ITVPQGATSVSIGNDGTVSATLQGESEPSQLGQIE 175 Query: 160 LYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 L S G + + TP ++G+ ++ G+LE SN N + E+ MI Sbjct: 176 LASFMNPSGLQSIGGNLLVETAASGTPQVGVAGLEGRGVIRSGYLETSNVNIVEELVDMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML+ + Sbjct: 236 ETQRAYEVNSKMIKATDE-MLQYVNQ 260 >gi|330447905|ref|ZP_08311553.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492096|dbj|GAA06050.1| flagellar basal-body rod protein FlgG [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 261 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 106/259 (40%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T +LD A+ G +F +E+ G ++ +R+G+F Sbjct: 61 QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIENSDGQVMYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 V +G +V+ G IQIP++ ++G G ++ + + + + L Sbjct: 121 HVNSEGLMVNGQGL-----PLQPQIQIPEEANSISIGVDGIVTATLAGDPEPQELGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLED-----LSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + ++ ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLYKETQASGQAQEIIAGTDGAGSLKQGALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|163750569|ref|ZP_02157807.1| flagellar basal-body rod protein FlgF [Shewanella benthica KT99] gi|161329724|gb|EDQ00713.1| flagellar basal-body rod protein FlgF [Shewanella benthica KT99] Length = 246 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF+ + + A + ++ F Sbjct: 1 MDKLLYVAMSGAKQNMNSLAVRANNLANANTDGFKADMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG +LD A++GD W A++S G TR G G L + G Sbjct: 59 TESPSADFTAGPIKTTGRDLDIAVKGDGWIAVQSADGGEAYTRSGSLSFDTTGLLRNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 P++ A PI +P E + + G IS + +V+ + L + + Sbjct: 119 N-PIMGDAG-PIVLPLPIEKIEIAQDGTISVRPLGATAEVIEVVGRIKLVNPGN--QNLM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ I + +T++ G +E SN N++ EM +I + ++F ++ E Sbjct: 175 RGEDGLFRLISGDNAPADAFITLESGAVEGSNVNAVSEMVALISIQRQFEMQVKMMKTAE 234 Query: 232 KSMLEA 237 + M +A Sbjct: 235 E-MDKA 239 >gi|152980353|ref|YP_001353112.1| FlgF flagellar basal body rod protein [Janthinobacterium sp. Marseille] gi|151280430|gb|ABR88840.1| FlgF flagellar basal body rod protein [Janthinobacterium sp. Marseille] Length = 246 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 102/249 (40%), Gaps = 12/249 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + ++ ST A N++N T GFR F V + ++ +FV Sbjct: 1 MDRLIYTAMSGAKQIMEQQSTTAHNLANVSTTGFRAQMDTFRAV--PVVSNGLPTRTFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 G TG LD A++G W A+E G TR G K+ ++G L + G Sbjct: 59 DSTIGTDFRAGPIQQTGRTLDLAVQGPGWLAVERADGTEGYTRSGSLKINENGVLQT-EG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRE 173 VL PI IP + + + G IS G I L V+ G + R Sbjct: 118 GLNVLADGG-PITIPPNVK-ISFAKDGTISSVDSGNVPGATIEIARLKLVNPDVGNLERS 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + GI P + + V V G +E SN N + M MI L ++F ++ + + + Sbjct: 176 SDGIFITKDRLPADVDANVGVISGAIEGSNVNVVDAMVNMISLARQFELNMKMLKDADSN 235 Query: 234 MLEAIRNIA 242 +A + +A Sbjct: 236 AAKADQFLA 244 >gi|212634349|ref|YP_002310874.1| flagellar basal body rod protein FlgF [Shewanella piezotolerans WP3] gi|212555833|gb|ACJ28287.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 247 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF+ + + A + ++ F Sbjct: 1 MDKLLYVAMSGAKQNMNSLAISANNLANANTDGFKADLAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG +LD A++GD W A+++ G TR G G L + G Sbjct: 59 TESPSADFTNGPIKTTGRDLDIAVKGDGWIAVQADDGGEAYTRSGSLSFDTTGVLRNDKG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 P++ PI +P E + + G IS + + + + L + + Sbjct: 119 T-PLMGDNG-PIVLPLPIEKIEISQDGIISVRPTGATAEVIEEVGRIKLVNPGNEN--LM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + P V + G +E SN N+++EM MI + ++F ++ E Sbjct: 175 RGKDGLFRQMSGEPAPADLSVGLLSGAVEGSNVNAVHEMVSMIDIQRQFEMQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 ET 236 >gi|163794152|ref|ZP_02188125.1| Flagellar basal body rod protein [alpha proteobacterium BAL199] gi|159180766|gb|EDP65285.1| Flagellar basal body rod protein [alpha proteobacterium BAL199] Length = 261 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 106/267 (39%), Gaps = 34/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S NI A + + +++N++N +T G++ + +F +++ + S Sbjct: 1 MQSLNIASTGMAAQQFNVEVISNNIANMNTTGYKRQRAEFQDLLYQDLRRVGTNSSDAGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y E G+ T + D A+ G +F +E P G TR G F Sbjct: 61 IVPSGIQIGVGVKTAATYRINEQGALTLTDNKFDLAILGQGYFQVELPNGETAYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + DG+LV+ G Y V I IP + E G++ + + + + L Sbjct: 121 QTNQDGTLVTPDG-YTVQPG----ITIPSDTLSVTINESGQVFAQIDGQVQEQNVGQLQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E S P G +++GF+E SN + ++E+ +I Sbjct: 176 AIFQNDAGLENIGQNLLLETSASGAATTGVPGATGFG-KLQQGFVEASNVDPVHEITNLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I+ +++ M + N+ Sbjct: 235 TAQRAYELNSKIIETSDQMM-STVNNV 260 >gi|147678415|ref|YP_001212630.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] gi|146274512|dbj|BAF60261.1| flagellar hook protein FlgE [Pelotomaculum thermopropionicum SI] Length = 269 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G + + + R+ + +N++N +T+GF+ + F +V+ N Sbjct: 1 MLRSLYAGASGLRSHQTRMDVIGNNIANVNTIGFKGSRANFQDVLYQTIRFGSAGSDNTG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGR 105 S V G S G STG +LD A+ G+ WF ++ S + TR+G Sbjct: 61 GVNKSQVGLGVTVASITNNTGPGGMQSTGRDLDLAINGNGWFMVKPDASQDEVYYTREGT 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIP-QKDEIFNVGEKGEISQK---GKVIA---TM 158 F + ++G LV+++G Y +LD++ IQ P + N+ + G IS G+++ + Sbjct: 121 FYIDNNGYLVNSNGYY-LLDVSGNTIQFPSEGVASINISKDGIISYTPLGGEMVENAFQI 179 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLED------LSGVTVKRGFLEDSNANSMYEMGQ 212 GL G R ++ ++ D T+ G+LE SN + E Sbjct: 180 GLAMFPNQDGLERVGSNTFKESLTSGAALDEKTPNSGGLGTINSGYLEMSNVDLTDEFTN 239 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + + I ++ + E + Sbjct: 240 MISTQRGYQANARTITVTDQMIEELL 265 >gi|68164544|gb|AAY87273.1| predicted flagellar basal body rod protein [uncultured bacterium BAC17H8] Length = 262 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 108/265 (40%), Gaps = 32/265 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---- 58 +S ++ A + R+ +A+N++N +T GF+ + F ++ ++ +++ Sbjct: 4 SSMHVAKTGLNAQQTRMQIIANNLANVNTTGFKRDRANFETLLYQVRRVAGDQVTAEANL 63 Query: 59 -----VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 V +G ++ + GS I+T LD ALEG +F + P G + TR+G F Sbjct: 64 TSSFSVGTGARIVNTQKAHTQGSLITTDNSLDLALEGGGFFQVLLPDGRVGYTRNGAFST 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYS 162 +G L ++SG VL I +P N+ G +S + + + + Sbjct: 124 NSEGVLTTSSGY--VL---QPEIALPDGVSQINISRDGIVSVLVAGGIGAEAVGQLQIAD 178 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G E I P + G V +G LE SN N + E+ +MI Sbjct: 179 FTNRGGLQPIGESFYVETDTSGAPIVGNPQDAGLG-RVIQGALESSNVNVVTELVEMIET 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + I ++ + +N+ Sbjct: 238 QRAYEVSSKSITSVDEMLRYISQNL 262 >gi|300311353|ref|YP_003775445.1| flagellar basal body rod protein FlgF [Herbaspirillum seropedicae SmR1] gi|300074138|gb|ADJ63537.1| flagellar basal body rod FlgF protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 17/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ ++ +T ++N++N T GFR F + D +FV Sbjct: 1 MDRLVYTAMSGAKHTLEQQATASNNLANATTTGFRAQLNTFRA--APVVGDGLPTRTFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G TG LD A++G W A+++ G TR+G FK+ ++G L + SG Sbjct: 59 DSTAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + + D PI IP + G +S V+ + L + D + ++ Sbjct: 119 QTVLGD--GGPITIPPDAT-VAIAADGTVSAIPTNGIPNAVNVLGRIKLVNPD--EKNMK 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R + G+ I D + V + G LE SN N + M MI+L+++F +I E Sbjct: 174 RGDDGLFRTITGAAQPD-ANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKMIQTAE 232 Query: 232 KSMLEA 237 +A Sbjct: 233 SDATKA 238 >gi|115523179|ref|YP_780090.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisA53] gi|115517126|gb|ABJ05110.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris BisA53] Length = 262 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 99/258 (38%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKIS-- 57 S I A + + +A+N++N +T ++ + +F+++ I + ++ Sbjct: 1 MRSLAIAATGMSAQQLNVEVIANNIANINTTSYKRSRAEFTDLFYQIDRMQGVPNRVGEG 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V S G+ TG D A+ G WF + P G + TR G F Sbjct: 61 AVPEGAKLGLGVRSAAVRKLHLQGALAQTGNAYDLAVNGRGWFQVVGPNGDTLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 D LV+A G Y V I IP+ V E G++ K +++ + L Sbjct: 121 NTNADAQLVTADG-YKV----DPTILIPEGTAQVTVNESGQVYAKLDTEVTPRLLGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ I TP+ G + + +LE SN + + E+ ++I Sbjct: 176 ANFANEAGLDPLGSNLYKETIASGTPVVGFPGDIGFGKIHQHYLESSNVDPVKEITELIS 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 AQRSYEMNSKVIQAADEM 253 >gi|311992329|gb|ADQ26738.1| flagellar distal rod protein [Aeromonas hydrophila] Length = 261 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 111/262 (42%), Gaps = 29/262 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------ 57 + I A + +S ++N++N TVG++ + F +++ N + S Sbjct: 3 ALWISKTGLDAQQTNISVTSNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSADTERP 62 Query: 58 ---FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F + Sbjct: 63 SGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQFTLN 122 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSV 163 +G++V+ YP+ IQIP+ + +GE G++S + +V+ + Sbjct: 123 SEGTIVTPGNGYPLQPE----IQIPENAQSVTIGEDGQVSVQLKGDGASQVVGQINTTDF 178 Query: 164 DMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQ 218 + G + P++ ++G +K+G LE SN N E+ +I + Sbjct: 179 VNASGLQPMGENMFVETQSSGAPVQGVAGTDGLGVIKQGMLETSNVNVTEELVNLIQAQR 238 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + + ++ + M I+ Sbjct: 239 VYEMNSKVLSAVDGMMSFLIQR 260 >gi|225181584|ref|ZP_03735025.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] gi|225167692|gb|EEG76502.1| flagellar basal body rod protein [Dethiobacter alkaliphilus AHT 1] Length = 259 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 25/259 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 A +Q++ A N++N +T G++ FS++V + A+G Sbjct: 4 RGLWNAAGGMRAQQQKIDVTAHNIANVNTTGYKKKTTLFSDLVYQSIERRGNAVEPAAAG 63 Query: 63 K-------------EYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKV 108 + G+++ T +LD A+ GD +F + P G+ TRDG F Sbjct: 64 EHPKTVGVGSKVAAIRSDLRPGTYLQTDRDLDMAIVGDGYFQITLPGGGMAYTRDGSFSR 123 Query: 109 TDDGSLVSASGK---YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 +G++V++ G +P L + + + + V E G + + + L D Sbjct: 124 DSEGNIVNSQGYRVVFPQLPEGQYEVNVAPEGAVSAVYEDGTV----VPLGMLQLAYFDN 179 Query: 166 SQGFVRRENSGISPNIPPTPLE---DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 G + ++ + G V +G+LE SN + EM Q+I + F Sbjct: 180 PHGLEQLGDNLLQATPASGAALLAFPGEGSRVSQGYLESSNVDLAAEMTQLIINQRSFEL 239 Query: 223 ITTLIDENEKSMLEAIRNI 241 + + E+ M + Sbjct: 240 NSRALRTAEE-MWSIANQL 257 >gi|90411007|ref|ZP_01219021.1| putative polar flagellar FlgG [Photobacterium profundum 3TCK] gi|90328220|gb|EAS44531.1| putative polar flagellar FlgG [Photobacterium profundum 3TCK] Length = 262 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N T+GF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQDT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T +D +EG+ +F + P G I TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVFTQGNTQTTNNAMDMMIEGEGFFQVLLPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG +V+ Y V I IP+ VG GE+S Q+ +V+ + Sbjct: 121 TINGDGQMVTTGSGYVVQPE----IAIPEDAVGITVGNDGEVSARIRGQQENQVLGQLTT 176 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + P P D G +++ LE SN N E+ MI Sbjct: 177 VGFINPGGLEPIGQNLFLPTGASGDAQEGVPGLDGLGA-IRQSMLETSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 236 EAQRVYEMNSKVISTVDQ-MLSYVNQ 260 >gi|169831888|ref|YP_001717870.1| flagellar basal body rod protein [Candidatus Desulforudis audaxviator MP104C] gi|169638732|gb|ACA60238.1| flagellar basal body rod protein [Candidatus Desulforudis audaxviator MP104C] Length = 246 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 15/251 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + LA + RL VA N++N +T GFR F+ + +++++ + Sbjct: 1 MIRGVYTAASGMLAGQTRLDAVAHNIANVNTTGFRRQVPVFAPYLQTAVGRHEKRVTPIG 60 Query: 61 SGKE-------YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + G + TG +D ALEG+ +F +E + TR G FKV G Sbjct: 61 TTSLGTVPTALVTDLTGGPVVQTGRTMDLALEGEGFFTVEREGQQLYTRAGSFKVDASGI 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRR 172 LV+ +G PVL P+++ F V G + S G+ + + L ++ + +VR Sbjct: 121 LVTRAGD-PVLGERG-PLKVGHDG--FTVSADGRVFSSTGEELDRLRLTALPGRETWVRT 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + + P + V +G+LE SN + E+ ++ ++ + + + + Sbjct: 177 PDGYLMTGEATAPAIN---TRVHQGYLEGSNVHLAVELVDLLLASRLYAANQRVARTQDT 233 Query: 233 SMLEAIRNIAS 243 + +AI + + Sbjct: 234 LVEKAINQVGA 244 >gi|294013088|ref|YP_003546548.1| flagellar basal-body rod protein FlgG [Sphingobium japonicum UT26S] gi|292676418|dbj|BAI97936.1| flagellar basal-body rod protein FlgG [Sphingobium japonicum UT26S] Length = 262 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 30/265 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 + ++ A ++ +A+N++N +T GF+ + F + Sbjct: 3 NAALHVARTGLDAQNTKMRVIANNLANVNTTGFKRDRADFETLAYQQIVAAGANSDSENK 62 Query: 56 -------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 S VA G+ TG LD A+EG +F ++ P G I TR G F Sbjct: 63 FATGLNLGSGVALQGTSKINAQGTLNQTGNTLDMAIEGSGYFQVQQPDGSIAYTRAGNFT 122 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLY 161 T +G +V++ G P++ I +P+ +G G +S + + + L Sbjct: 123 TTAEGVVVTSDG-LPLIPQ----ITVPEGATSVTIGNDGTVSATLQGQTEPTQLGQIELA 177 Query: 162 SVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHL 216 S G + + TP ++G+ V+ G+LE SN N + E+ MI Sbjct: 178 SFMNPGGLTSVGGNLLKESAASGTPQVGVAGLDGRGVVRAGYLETSNVNVVEELVDMIET 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + A + + Sbjct: 238 QRAYEVNSKMIKATDEMLQYANQQL 262 >gi|89072313|ref|ZP_01158892.1| putative flagellar basal-body rod protein [Photobacterium sp. SKA34] gi|89051845|gb|EAR57297.1| putative flagellar basal-body rod protein [Photobacterium sp. SKA34] Length = 261 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 109/259 (42%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S V G+ +T +LD A+ G +F +E+ G + +R+G+F Sbjct: 61 QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIENSDGEVMFSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 V +G +V+ G IQIP++ ++G G ++ + + + + L Sbjct: 121 HVNSEGLMVNGQGL-----PLQPQIQIPEEANTISIGVDGIVTATLAGDPQPQELGQITL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P E ++G+ ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLYKETQASGQPQEMIAGIDGAGSLKQGALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|319764540|ref|YP_004128477.1| flagellar basal-body rod protein flgf [Alicycliphilus denitrificans BC] gi|317119101|gb|ADV01590.1| flagellar basal-body rod protein FlgF [Alicycliphilus denitrificans BC] Length = 246 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 11/237 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A R + +A+N++N T GFR F V ++ F Sbjct: 1 MDRIIYTSMTGASAAAHRQAVLANNLANVSTNGFRAEMSSFRSV--PLQGSGSTTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G TG LD G+AWFA++ G TR G F+VT+ G LV+ +G Sbjct: 59 EATSGHVETPGPVQRTGRNLDAMAAGNAWFAVQGLDGTEAYTRAGSFEVTEAGQLVTPTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 PVL PI PQ E +G G ++ Q+ + + + L + +R + Sbjct: 119 -LPVLSDGGAPITAPQGAE-LTLGADGTVTARVPGQQPQTVGRLKLATPAQDDPL-KRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G+ P+ + G LE SN N + M MI ++F L+ E Sbjct: 176 DGLFRTASGEPMASDPAARLLAGALEGSNVNPVESMVGMIAAARQFEQQMRLLQTAE 232 >gi|257095357|ref|YP_003168998.1| flagellar basal-body rod protein FlgG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047881|gb|ACV37069.1| flagellar basal-body rod protein FlgG [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 260 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 104/265 (39%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S A + ++ +A+N++N T GF+ + F++++ + S Sbjct: 1 MIRSLWTASTGLTAQQVQIDIIANNLANVSTNGFKQARGIFADLLYQTLRQPGAQSSQTT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V GS TG LD A++G +F + P G TRDG F Sbjct: 61 QIPDGLQIGLGVTPVSTGRIFTQGSLQQTGNALDMAIDGAGFFQVLLPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + + G +V+A+G YP+ I IP + V G +S I T+ + Sbjct: 121 QKDNQGQIVTANG-YPLQPA----ITIPAQALTVTVATDGVVSITLPTTTAPVQIGTIQV 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G + E + P TP + SGV V + ++E SN N E+ MI Sbjct: 176 ATFVNNGGLQSVGENLYLETASSGTATPNTPGTNGSGV-VVQNYVEASNVNVAQELVLMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + ++ +++ + + Sbjct: 235 QTQRAYELNAKVVSTSDQMLARLTQ 259 >gi|254251192|ref|ZP_04944510.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] gi|124893801|gb|EAY67681.1| flagellar basal-body rod protein [Burkholderia dolosa AUO158] Length = 252 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++N T GFR + V + D Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSTVDPATTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W +++ P G TR G V +G LV Sbjct: 61 TYVLASTPGADFAPGPISRTGNPLDVAVQGPGWLSVQLPDGGEAYTRAGNLHVDQNGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ + L + D + Sbjct: 121 NAS-NLPVVGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQLKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LTRGNDGLFRTADGNPADADPNVVVVPNSLEGSNVNPVNAMVSMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 + +++ ++ + Sbjct: 236 ETADQN-EQSANQL 248 >gi|238752865|ref|ZP_04614330.1| Lateral flagellar rod protein (FlgG-like) [Yersinia rohdei ATCC 43380] gi|238708904|gb|EEQ01157.1| Lateral flagellar rod protein (FlgG-like) [Yersinia rohdei ATCC 43380] Length = 261 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 104/267 (38%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + + A + +++ +++N++N +T GF+ +V F ++ + + Sbjct: 1 MNPALWVSKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRTPGTPLDQNN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRF 106 S V VG+ T ELD A+ G +F +E+ G+ TR G Sbjct: 61 ATPNGIQLGSGVKVVGTQKQFTVGNIKVTKGELDVAIAGKGFFQIETSDGGLAYTRAGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG LV+A G P++ I++P +G+ G ++ + + + L Sbjct: 121 AINADGVLVNAQG-MPLIPQ----IELPAGSSNLAIGKDGTVTAQVGGESEPAELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + +E + P E+ G ++ G LE SN + EM MI Sbjct: 176 VDFVNPAGLEAVGGNMYKETVASGTAVEGVPGEEAFG-QLEHGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLKFVTQKL 261 >gi|83647172|ref|YP_435607.1| flagellar basal body rod protein FlgF [Hahella chejuensis KCTC 2396] gi|83635215|gb|ABC31182.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 248 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 18/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I ++ A+N++N +T GF++ ++ + + + ++ Sbjct: 1 MDKALYIAMSGAKQNMLSQRGHANNLANANTTGFKSDFMQARSM--PVFGEHYPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + E+GS + TG +LD A+ G+ W A+++P G TR+G + +G L + SG Sbjct: 59 TERPATDFEMGSLMQTGRDLDVAVAGNGWIAVQAPDGGEAYTREGELLLDVNGVLRTGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PVL PI +P + N+G G IS + + + L + + Sbjct: 119 -LPVLGNGG-PIAVPPAAK-LNIGVDGTISIVPLGGNPDEIQEVDRIRLVNPPAED--LE 173 Query: 172 RENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + G+ P P L V ++ G+LE SN N++ EM +++ L+++F ++ Sbjct: 174 KGVDGLIHLKPDVPGPALPDGLVRLESGYLESSNVNAVEEMTEILSLSRQFELQVKVMRA 233 Query: 230 NEKSMLEAIR 239 + + A R Sbjct: 234 ADDNSEAAAR 243 >gi|206558969|ref|YP_002229729.1| flagellar basal body rod protein FlgF [Burkholderia cenocepacia J2315] gi|198035006|emb|CAR50878.1| flagellar basal-body rod protein FlgF (putative proximal rod protein) [Burkholderia cenocepacia J2315] Length = 252 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++N T GFR + V + D Sbjct: 1 MDRLIYTAMTGASQSLDQQAVVANNLANASTTGFRAQLATYRAVPMNFGDGSKIDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V S G TG LD A++G W ++++ G TR G V ++G LV Sbjct: 61 TYVLSSTPGADYAPGPITRTGNPLDVAVQGPGWLSVQTADGSEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVIGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LTRGNDGLFRTADGNPADVDPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ + + Sbjct: 236 QTADQN-EQTANQL 248 >gi|15964415|ref|NP_384768.1| flagellar basal body rod protein FlgG [Sinorhizobium meliloti 1021] gi|307311557|ref|ZP_07591198.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti BL225C] gi|307318912|ref|ZP_07598343.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti AK83] gi|17380480|sp|Q52946|FLGG_RHIME RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|15073592|emb|CAC45234.1| Flagellar basal-body rod protein [Sinorhizobium meliloti 1021] gi|306895326|gb|EFN26081.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti AK83] gi|306899574|gb|EFN30203.1| flagellar basal-body rod protein FlgG [Sinorhizobium meliloti BL225C] Length = 262 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 103/266 (38%), Gaps = 31/266 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + +I A + L +A+N++N +T G++ + +FS+++ + N +Q Sbjct: 1 MKALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + GS ++TG + D AL G WF +E+P G + TR G F Sbjct: 61 IVPEGAIIGLGVQTSAVRNLHIQGSLVNTGNDYDLALVGRGWFQIETPDGETVYTRSGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 G LV+ G V + +PQ G++ + + I + + Sbjct: 121 NTNATGQLVTIDGYTVVPG-----VTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQLTI 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G + P+ D VK+ +LE SN + + E+ +I Sbjct: 176 ANFVNEAGLEPMGENLFRQTPASGDPIVGTPADPGFAQVKQNYLESSNVDPVKEITDLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 236 AQRAYEMNSKIIQAADEMAATVSKNL 261 >gi|261211321|ref|ZP_05925609.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC341] gi|260839276|gb|EEX65902.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC341] Length = 249 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD ++G+ W ++ G LTR+G ++ + G L++ +G Sbjct: 59 TERPGNNFAQGSVITTGRDLDVTIQGEGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +PVL PI +P +G G IS + + V+ + L + Q + Sbjct: 119 -HPVLGETGAPITLPVPLNKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRL-NDQSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P T E + V + G LE SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|221199740|ref|ZP_03572783.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD2M] gi|221208655|ref|ZP_03581655.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD2] gi|221171466|gb|EEE03913.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD2] gi|221179979|gb|EEE12383.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD2M] Length = 252 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++N T GFR + V + D + Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSAIDPNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W +++ P G TR G V +G LV Sbjct: 61 TYVLASTPGADFAPGPITRTGNPLDVAVQGPGWLSVQLPDGSEAYTRAGNLHVDQNGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVVGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAA 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LVRGNDGLFRTTDGNPADADPNVAVVPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|114765245|ref|ZP_01444377.1| hypothetical protein 1100011001307_R2601_00410 [Pelagibaca bermudensis HTCC2601] gi|114542380|gb|EAU45408.1| hypothetical protein R2601_00410 [Roseovarius sp. HTCC2601] Length = 249 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 6/247 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFV 59 M S + ++ ALE++L A+N++N ++ GF+ +V F + + + ++V Sbjct: 1 MDNSTYVAISKLTALERQLDVTANNIANANSSGFKAERVLFETYLQKDDASLAGEGTNYV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 Y+ G + TG LD AL G WFA E P G + RDG+ + G + +AS Sbjct: 61 LDRGSYVDDTPGVVVQTGNPLDLALTGQGWFAYEMPDGRMAYGRDGQLVLDAQGQVTTAS 120 Query: 119 GKYPVLDMASVPIQIPQK-DEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRRENSG 176 G +LD+ P+ IP + + + G I S +G V+ +G++ + Q R Sbjct: 121 GA-QILDLGGAPLNIPPEFAASVTISDDGVISSPEGGVMGQVGIFELPDRQTLSRGGAGM 179 Query: 177 ISPNIPPTP-LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 PN D +G +V +G +E SN + E+ ++I++ Q + L+ +++ Sbjct: 180 FVPNAEAQGLAPDETGSSVIQGAVESSNVQPVTEVTRLINIQQAYQHALNLVASDDELKK 239 Query: 236 EAIRNIA 242 E + I Sbjct: 240 EMLTRIG 246 >gi|323527712|ref|YP_004229865.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1001] gi|323384714|gb|ADX56805.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1001] Length = 252 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 15/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++N T GFR F V + + + Sbjct: 1 MDRLIYTAMSGSTQALEQQAIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV S G TG LD A+EG W ++++ G TR G + +G LV Sbjct: 61 TFVLSSTPGADYTPGPIQQTGNPLDVAIEGPGWLSVQTADGGEAYTRAGNLHIDQNGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+ VL P+ +P + +G G ++ V+ L V+ Sbjct: 121 NAT-NQVVLGNGG-PVSVPPGAQ-ITIGRDGTVTALTPGDPPTAVVTIDQLKLVNPDPQT 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P + V V LE SN N + M MI ++F T L++ Sbjct: 178 LTRGDDGLFRTADGNPADADPTVAVAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLES 237 Query: 230 NEKSMLEAIRNI 241 +K+ +A + Sbjct: 238 ADKN-DQAANQL 248 >gi|313894975|ref|ZP_07828534.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 137 str. F0430] gi|320530443|ref|ZP_08031501.1| flagellar basal-body rod protein FlgG [Selenomonas artemidis F0399] gi|312976428|gb|EFR41884.1| flagellar basal-body rod protein FlgG [Selenomonas sp. oral taxon 137 str. F0430] gi|320137276|gb|EFW29200.1| flagellar basal-body rod protein FlgG [Selenomonas artemidis F0399] Length = 264 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + + VA N++N +T G + ++ +F ++V + + Sbjct: 1 MMRALWSAASGMKAQQAHMDIVAHNIANVNTHGGKKVRAEFQDLVYQTLREAGARNGTDS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 G+ +T D ++G+ +F + P G TRDG + Sbjct: 61 QYPTALQIGLGTRVAATQRIFTQGALQTTDNPTDIGIQGEGFFRVTLPDGSTAYTRDGTW 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K+ + +V+ G L + I E + G +S + + + L Sbjct: 121 KLDSNRRMVTTDGY---LIADGIQIGENAPSESITISGDGRVSYREAGQTQQQEAGQITL 177 Query: 161 YSVDMSQGFVRRE------NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + I TP D +G T+ +G LE SN + EM +MI Sbjct: 178 ARFVNPAGLTSIGKNLFVVSDASGEAIESTPGLDGTG-TLTQGTLEMSNVQIVEEMVEMI 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + S + I SMLE + Sbjct: 237 ISQRAYESNSKAI-TTSDSMLEIANTL 262 >gi|162147479|ref|YP_001601940.1| flagellar basal-body rod protein flgF [Gluconacetobacter diazotrophicus PAl 5] gi|161786056|emb|CAP55638.1| putative flagellar basal-body rod protein flgF [Gluconacetobacter diazotrophicus PAl 5] Length = 254 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 8/246 (3%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKIS 57 + + I L+ L + L A+N++N +T GF+ K FS+ + K+ D++ Sbjct: 9 ENTTYIALSRVDVLSRALEVTANNLANANTDGFKASKELFSDYLVQQKDVHGLPGDKEEV 68 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + Y + G+ TG DFA+ G+ +FA+ + +G+ LTR+G F DG++V Sbjct: 69 YTQDRSTYQDRLQGALRQTGNLTDFAINGEGYFAVRTTQGVRLTRNGEFNRRADGTIVDG 128 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 SG P++D + IP +D +V G +S + +AT+ L +VD V + Sbjct: 129 SGN-PLIDRNGNNVVIPPRDHTLSVASDGTMSTETGRVATLDLVTVDNPNTLVPEGGYLL 187 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P TP +++ +++G LE SN N++ E +M+ + + ++ LI A Sbjct: 188 RPT---TPTRNVANKEIRQGMLESSNVNAVSETTEMVEIQRDYDLTFQLIQTESTRQSNA 244 Query: 238 IRNIAS 243 I I + Sbjct: 245 IDKITA 250 >gi|90577346|ref|ZP_01233157.1| putative flagellar basal-body rod protein [Vibrio angustum S14] gi|90440432|gb|EAS65612.1| putative flagellar basal-body rod protein [Vibrio angustum S14] Length = 261 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 108/259 (41%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQLN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S V G+ +T +LD A+ G +F +E+ G + +R+G+F Sbjct: 61 QLPSGVQLGSGVRVVGTQKVFTQGNSQNTQQQLDLAVMGSGFFQIENSDGEVMFSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 V +G +V+ G IQIP++ ++G G ++ + + + + L Sbjct: 121 HVNSEGLMVNGQGL-----PLQPQIQIPEEANTISIGVDGIVTATLAGDPQPQELGQITL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P E ++G ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAIGGNLYKETQASGQPQEMIAGADGAGSLKQGALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|83816512|ref|YP_446741.1| flagellar basal-body rod protein FlgG [Salinibacter ruber DSM 13855] gi|294508677|ref|YP_003572736.1| flagellar basal-body rod protein FlgG [Salinibacter ruber M8] gi|83757906|gb|ABC46019.1| flagellar basal-body rod protein FlgG [Salinibacter ruber DSM 13855] gi|294345006|emb|CBH25784.1| flagellar basal-body rod protein FlgG [Salinibacter ruber M8] Length = 262 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 102/262 (38%), Gaps = 31/262 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------- 55 S A + + +A+N+SN +T G++ +V F +++ + Sbjct: 4 RSLQTAALGMQAQQTSIDNIANNLSNANTTGYKRSRVVFQDLLYENVQASAEGQTDGAEP 63 Query: 56 -----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 S + + GSF TG LD A+ GD +F ++ P G TRDG F ++ Sbjct: 64 AELQIGSGTTAVATVRNFSQGSFSKTGNSLDLAINGDGFFQVQQPDGSLAYTRDGTFTLS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSV 163 +G++V+ +G I +P ++ ++G + + + + M L Sbjct: 124 SEGNIVTQTGLKV-----QPNINVPPNAVEISIDQEGTVKARLQGESEMVELGQMELARF 178 Query: 164 DMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 S G + + TP G V++GFLE N + EM +I Sbjct: 179 PNSAGLRPQGGNLYEQTESSGEPFIGTPGRGGLG-NVRQGFLEKGNVKVVQEMTSLIQAQ 237 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + + + ++ +++ M A Sbjct: 238 RTYELNSRMVTTSDEMMQTANN 259 >gi|168335334|ref|ZP_02693430.1| Flagellar basal body and hook proteins [Epulopiscium sp. 'N.t. morphotype B'] Length = 256 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 110/259 (42%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKN------- 50 M +R+ ++++++N++T +R F EV+ + Sbjct: 1 MVRGLYTAATGMQVQTRRMDVISNDLANSNTTAYRKDYAVVEAFDEVLMKRLDGINEPPW 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 D+ ++ Y G+ I TG + A+ G +F +E+P G LTRDG F Sbjct: 61 RYKDLGTVMNGAKVADIYTDFRPGNLILTGISNNLAINGLGFFRVETPNGERLTRDGSFT 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPI---QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V DG LV+A G YPVL + V G++ I T+ + +VD Sbjct: 121 VNGDGVLVTAXG-YPVLGENGQIALGRTFLNEGREMQVLPDGQVVLNTVTINTIDIVNVD 179 Query: 165 MSQGFVRRENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 Q V+ ++ + + P+ +++G+LE SN N + M MI +++ + + Sbjct: 180 DPQLLVKEADNLFDATGLQLNPI----NSLIEQGYLESSNVNPVNAMVDMISVSRAYEAN 235 Query: 224 TTLIDENEKSMLEAIRNIA 242 ++ +++ + A+ ++ Sbjct: 236 QRMVQIHDELVGRAVNDVG 254 >gi|89098635|ref|ZP_01171517.1| flagellar hook protein [Bacillus sp. NRRL B-14911] gi|89086597|gb|EAR65716.1| flagellar hook protein [Bacillus sp. NRRL B-14911] Length = 270 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 112/262 (42%), Gaps = 24/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S G++ + +L + +N++N +T G++ +V F ++V + Sbjct: 7 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTFGYKKGRVTFKDMVSQTVSGATAGGAGVG 66 Query: 55 --KISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + S GS +TG LD ++GD +F ++ TR G F Sbjct: 67 GINPKQVGLGSQMSSIDTVDTQGSLQTTGRILDIGIQGDGYFRVQKGTNSYYTRAGNFYF 126 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIP--QKDEIFNVGEKGEIS--QKGKVI--ATMGLYS 162 + G++V+ASG+ VL+ I IP + E ++G G IS Q G T+GL Sbjct: 127 DNSGNMVTASGE-QVLNSNGTAINIPNISQIENLSIGADGSISFIQGGTSTTGPTIGLAR 185 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + G + N+ P +++ ++ G LE SN + E +MI Sbjct: 186 FSNNGGLEKVGNNLYKSTANSGPAQNVLPGTSGAGSLVSGSLEMSNVDLSEEFTEMIVAQ 245 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F + T +I +++ + E + Sbjct: 246 RGFQANTRIITTSDEILQELVN 267 >gi|221215572|ref|ZP_03588535.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD1] gi|221164560|gb|EED97043.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans CGD1] Length = 252 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++N T GFR + V + D + Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSAIDPNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W +++ P G TR G V +G LV Sbjct: 61 TYVLASTPGADFAPGPITRTGNPLDVAVQGPGWLSVQLPDGSEAYTRAGNLHVDQNGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVVGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LVRGNDGLFRTTDGNPADADPNVAVVPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|77359724|ref|YP_339299.1| flagellar basal body rod protein FlgG [Pseudoalteromonas haloplanktis TAC125] gi|76874635|emb|CAI85856.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] Length = 262 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 109/266 (40%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S +++N++N TVG++ + F +++ N + S Sbjct: 1 MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAVFEDLLYQNINQPGGRSSQDT 60 Query: 58 ------FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + + + G+ ++T LD+ + G +F + P G I +R+G+F Sbjct: 61 EMPSGLMLGAGAKVVANQKNFSQGNMLTTENSLDWMISGSGFFEVLQPDGNIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 DG +V++ Y V + +P + V + GE+S VI + + Sbjct: 121 TTDGDGRVVTSGAGYVVQPE----MNVPDDAQSITVSQDGEVSVRVAGQADNVVIGQITI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + + + P++ GV T+ +G LE SN N E+ +I Sbjct: 177 SDFINPSGLEPIGQNLYTETAVSGAPVQGNPGVDGLGTIIQGSLETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ M + + Sbjct: 237 TQRVYEMNSKVISAVDEMMSYINQQL 262 >gi|2275161|gb|AAB81413.1| FlgG [Sinorhizobium meliloti] Length = 262 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 103/266 (38%), Gaps = 31/266 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + +I A + L +A+N++N +T G++ + +FS+++ + N +Q Sbjct: 1 MKALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + GS ++TG + D AL G WF +E+P G + TR G F Sbjct: 61 IVPEGAIIGLGVQTSAVRNLHIQGSLVNTGNDYDLALVGRGWFQIETPDGETVYTRSGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 G LV+ G V + +PQ G++ + + I + + Sbjct: 121 NTNATGQLVTIDGYTVVPG-----VTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQLTI 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G + P+ D +K+ +LE SN + + E+ +I Sbjct: 176 ANFVNEAGLEPMGENLFRQTPASGDPIVGTPADPGFAQIKQNYLESSNVDPVKEITDLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 236 AQRAYEMNSKIIQAADEMAATVSKNL 261 >gi|288958675|ref|YP_003449016.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288910983|dbj|BAI72472.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 261 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 S IG +A + + T+++N++N+ T G++ + +F +++ I S + Sbjct: 1 MRSLAIGATGMIAQQLNVETISNNIANSTTTGYKKQRAEFQDLLYQNFRRIGSTSSDAGT 60 Query: 62 GKEYLSK--------------EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + E G+ T +LD A+ G +F + P G TR G F Sbjct: 61 VVPTGVQVGAGVRVAAVARVLEQGNLNITDNKLDVAINGSGYFQITLPSGDTSYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 K++ G +V+A G Y V I IP ++ GE+ K + + + L Sbjct: 121 KLSPQGVIVTADG-YTVQPN----ITIPTNAVDISINSSGEVLVKLDGQTATQNVGQIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + + G ++ P+ G V +G LE SN N + E+ +I Sbjct: 176 ATFANAAGLEATGDNLFMETAASGQPVTGNPGAPGFGRVTQGALETSNVNVVQEITTLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + +I ++ M +A Sbjct: 236 AQRAYEMNSKVIKTTDEMMQQA 257 >gi|157376214|ref|YP_001474814.1| flagellar basal body rod protein FlgG [Shewanella sediminis HAW-EB3] gi|157318588|gb|ABV37686.1| flagellar basal-body rod protein FlgG [Shewanella sediminis HAW-EB3] Length = 262 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S +++N++N TVG++ + F +++ N + Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNVANASTVGYKKSRAVFEDLLYQTVNQAGGVSASNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + ++ + G+ ++T +D +EG +F ++ P G TR+G+F Sbjct: 61 KLPNGLNIGAGTKVVATQKVFTQGNMLTTDNSMDLMVEGPGFFEIQLPDGTAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 + D G +V+ Y V I IP+ V +GE+S K +V+ + + Sbjct: 121 TLDDTGQIVTPGSGYVVQPA----ITIPENATGITVSAEGEVSVKTPGTAESQVVGQLSM 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E I T D G +++G LE SN N E+ +I Sbjct: 177 TDFINPSGLDPMGQNLYTETGASGTPIQGTASLDGMGA-IRQGALETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 ESQRIYEMNSKVISAVDQMLSYVNQNL 262 >gi|161526185|ref|YP_001581197.1| flagellar basal body rod protein FlgF [Burkholderia multivorans ATCC 17616] gi|189349099|ref|YP_001944727.1| flagellar basal body rod protein FlgF [Burkholderia multivorans ATCC 17616] gi|160343614|gb|ABX16700.1| flagellar basal-body rod protein FlgF [Burkholderia multivorans ATCC 17616] gi|189333121|dbj|BAG42191.1| flagellar basal-body rod protein [Burkholderia multivorans ATCC 17616] Length = 252 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++N T GFR + V + D + Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSAVDPNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W +++ P G TR G V +G LV Sbjct: 61 TYVLASTPGADFAPGPITRTGNPLDVAVQGPGWLSVQLPDGSEAYTRAGNLHVDQNGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVVGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LVRGNDGLFRTTDGNPADADPNVAVVPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|13472576|ref|NP_104143.1| flagellar basal body rod protein FlgG [Mesorhizobium loti MAFF303099] gi|14023322|dbj|BAB49929.1| flagellar basal body distal rod protein; FlgG [Mesorhizobium loti MAFF303099] Length = 262 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I A + L +A+N++N +T G++ + +FS+++ + Sbjct: 1 MKALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNAS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRF 106 V + G STG D AL G WF +E G + TR G F Sbjct: 61 LVPEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDMALTGRGWFQIEGADGGTLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 G LV+ G + I +P V + G++ + + + + Sbjct: 121 NTNATGQLVTVDGANVI-----PAITVPTDAVEVIVNKTGQVFARIDGQTNLQTLGQLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ P D T+++G+LE SN + + E+ ++I Sbjct: 176 VNFANEAGLAPLGDNLFQETTASGPANAGVPGDPGFATIQQGYLEASNVDPVKEITELIS 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I + Sbjct: 236 AQRAYEMNSKVIQAADDM 253 >gi|319649558|ref|ZP_08003714.1| flagellar hook protein [Bacillus sp. 2_A_57_CT2] gi|317398720|gb|EFV79402.1| flagellar hook protein [Bacillus sp. 2_A_57_CT2] Length = 268 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 30/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ + +L + +N++N +T G++ +V F ++V G+ +N Sbjct: 1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTFGYKKGRVNFKDMVSQTISGATGSGENSG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + S GS +TG LD ++GD + ++ TR G + Sbjct: 61 GINPKQVGLGSQLSSIDTIDTQGSLQTTGRVLDIGIQGDGYLMVQRGNNTYYTRAGNLYL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKD----EIFNVGEKGEI------SQKGKVIATM 158 DD +LV+ASG + IQ+ D + ++ G I + + + Sbjct: 121 DDDANLVTASGD-KIKGADGAAIQLNGGDATVIKSLSISNDGTINFLIDGNDTLQAAGPI 179 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 G+ + + G + ++ +P TP ED +G+ + G LE SN + E + Sbjct: 180 GIARFNNNGGLEKIGDNLYKDTVNSGDAVPLTPGEDGAGI-LVSGTLEMSNVDLSEEFTE 238 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 MI + F + T +I +++ + E + Sbjct: 239 MITAQRGFQANTRIITTSDEILQELVN 265 >gi|54308099|ref|YP_129119.1| flagellar basal body rod protein FlgG [Photobacterium profundum SS9] gi|46912525|emb|CAG19317.1| putative polar flagellar FlgG [Photobacterium profundum SS9] Length = 262 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + +ST+++N++N T+GF+ + F ++ N + S Sbjct: 1 MHPALWVSKTGLDAQQTNISTISNNLANASTIGFKKSRAVFEDLFYQNINQPGGQSSQDT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G+ +T +D +EG+ +F + P G I TR+G+F Sbjct: 61 ELPSGLMLGAGSKVVATQKVFTQGNTQTTNNSMDMMIEGEGFFQILLPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG +V+ Y V I IP+ VG GE+S Q+ +V+ + Sbjct: 121 TINGDGQMVTTGSGYVVQPE----IAIPEDAVGITVGNDGEVSARIRGQQENQVLGQLTT 176 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + P P D G +++ LE SN N E+ MI Sbjct: 177 VGFINPGGLEPIGQNLFLPTGASGDAQEGVPGLDGLGA-IRQSMLETSNVNVTEELVNMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML + Sbjct: 236 EAQRVYEMNSKVISTVDQ-MLSYVNQ 260 >gi|154253003|ref|YP_001413827.1| flagellar basal body rod protein FlgG [Parvibaculum lavamentivorans DS-1] gi|154156953|gb|ABS64170.1| flagellar basal-body rod protein FlgG [Parvibaculum lavamentivorans DS-1] Length = 261 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S +I +A + + +++N++N T GF+ + +F +++ + S Sbjct: 1 MQSLSIAATGMMAQQLNVEVISNNIANMSTTGFKRGRAEFQDLLYQNLRRVGANSSDAGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + G+ +T +LD A++G +F +E P G TR G F Sbjct: 61 IVPSGVQVGLGVKTAAVNRIMTQGNMNNTENKLDVAIQGRGYFRIELPSGDDAYTRAGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG L++A G + I IP + + G++ +++ M L Sbjct: 121 DIGPDGQLITADGY-----TLAPGITIPPEATDIAISADGQVQVAIPGQTAPQIVGQMEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + TP D G +V +GFLE SN N++ E+ +I Sbjct: 176 VAFANEGGLDPLGGNLFAETPASGAPTIGTPGNDGLG-SVLQGFLETSNVNAVSEITSLI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + +I +++ M Sbjct: 235 TAQRAYEMNAKIITASDEMM 254 >gi|222084865|ref|YP_002543394.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722313|gb|ACM25469.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 262 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 103/266 (38%), Gaps = 31/266 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T G++ + +FS+++ I N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGYKRSRAEFSDLLYQTERAKGIANRPNQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V + + G T +LD AL G WF ++ P G TR G F Sbjct: 61 VVPEGANIGLGVQTTAVRNIQIQGELSQTSNDLDVALVGRGWFQIQMPDGTTAYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +D G +V+ G VL I IP + + G++S V+ + + Sbjct: 121 NKSDTGQMVTPDGN--VLQPG---ITIPSNASNVVINQSGQVSATIGTATTPTVLGQLQI 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ + P+ +K+G+LE SN + + E+ +I Sbjct: 176 ANFVNEAGLQPMGSNLFTQTPASGDPVVSDPNENGFAYMKQGYLESSNVDPVKEITDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I + +N+ Sbjct: 236 AQRAYEMNSKVITTADDMAQIVSKNL 261 >gi|307945666|ref|ZP_07661002.1| flagellar basal-body rod protein FlgG [Roseibium sp. TrichSKD4] gi|307771539|gb|EFO30764.1| flagellar basal-body rod protein FlgG [Roseibium sp. TrichSKD4] Length = 260 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 30/257 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQKIS 57 + +I A E+ + +++N++N T G++ +V F +++ ++ + Sbjct: 1 MKALHIAATGMKAQERNVEVISNNVANLRTTGYKRQRVDFQDLMYQNLRRAGSETSTAGT 60 Query: 58 FVASGKEYLS----------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V +G + S G+ TG +LD A+ G+ +F +E P G TRDG F Sbjct: 61 IVPTGVQIGSGVKVAATSRIMSQGAVEQTGKDLDLAVRGEGFFQIEMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLY 161 + +G+LV+ G V I IP+ + G +S + + L Sbjct: 121 ERDPNGTLVTVDGYTVVPG-----ITIPEDSRNITISTDGTVSAVDAGGATVNLGQIQLA 175 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G ++ P + V++ FLE +N +++ E+ +I Sbjct: 176 RFVNKAGLEAIGDNLFYETEASGPAQVDNPGGNGFGNVQQYFLEMANVDAVTEIADLISA 235 Query: 217 TQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 QRAYEMNSRVIKAADEM 252 >gi|90422610|ref|YP_530980.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB18] gi|90104624|gb|ABD86661.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB18] Length = 262 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 99/266 (37%), Gaps = 34/266 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKIS-- 57 + I A + + +A+N++N +T ++ + +F+++ I + ++ Sbjct: 1 MRALAIAATGMSAQQLNVEVIANNIANINTTSYKRARAEFTDLFYQIDRMQGVPNRVGEG 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V S G+ TG D A+ G WF + P G + TR G F Sbjct: 61 AVPEGAKLGLGVRSAAVRKLHLQGALTQTGNPYDLAVNGRGWFQVVGPNGETLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 DG LV+A G I IPQ V E G++ K + + + L Sbjct: 121 NTNADGQLVTADGYNV-----DPAILIPQGTVEVTVNESGQVFAKLDGEITPRELGRLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E + P + G + +LE SN + + E+ ++I Sbjct: 176 ANFANEAGLDPLGSNLYKETLSSGVPVVGVPGDPGFG-KIYHHYLESSNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ M + + Sbjct: 235 SAQRSYEMNSKVITAADE-MAQTVSK 259 >gi|260767768|ref|ZP_05876703.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] gi|260617277|gb|EEX42461.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] gi|315179400|gb|ADT86314.1| flagellar basal body rod protein FlgF [Vibrio furnissii NCTC 11218] Length = 249 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + A+N++N T GFR ++ + + A + + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRAD-LEQARSMQAYGDGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + + GS I+TG +LD ++GD W A+ G LTR+G + +G L++ +G Sbjct: 59 TERPGHNFQQGSVITTGRDLDVTVQGDGWIAVMDKTGKEGLTRNGNLNIDANGLLLNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +PVL PI +P +G G IS + + V+ + L +D Q + Sbjct: 119 -HPVLGETGAPITLPVPLAKVEIGNDGTISVRPQGAPADAMEVVDRIKLVRLDN-QSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P + + V + G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRSKDPNAAYDANANVKILTGAVEGSNVNAVGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 Sbjct: 237 DM 238 >gi|56695100|ref|YP_165447.1| flagellar basal body rod protein FlgG [Ruegeria pomeroyi DSS-3] gi|56676837|gb|AAV93503.1| flagellar basal-body rod protein FlgG [Ruegeria pomeroyi DSS-3] Length = 261 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 115/265 (43%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDID 53 + I A + R+ T+++N++N +T G+ + +F+++ +D Sbjct: 1 MRALKIAATGMSAQQMRVETISNNLANMNTTGYNARRAEFADLHYQQIARAGTVNASDGT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G + E G+ +TG +LD A+EG +F + P G TRDG Sbjct: 61 VLPTGVQLGLGVRPAAVTVHLEQGALSATGNDLDLAIEGRGYFEVTLPSGQSAFTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K + +G +V++ G V I IP ++ GE+ +G+++ + L Sbjct: 121 KRSAEGLIVTSDGLSVV-----PEITIPSDARSISINAAGEVYAYFDDAAEGQLLGQVTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++G + +E I P ED G T+++G+LEDS+ +++ E+ ++I Sbjct: 176 AGFTNAKGLEAIGSNLFKETEASGSPITGNPGEDGLG-TLRQGYLEDSSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAVDQMMSATTQ 259 >gi|88858141|ref|ZP_01132783.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas tunicata D2] gi|88819758|gb|EAR29571.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Pseudoalteromonas tunicata D2] Length = 262 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 32/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S +++N++N TVG++ + F +++ N + S Sbjct: 1 MHPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAVFEDLLYQNINQPGGRSSQDT 60 Query: 58 ------FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + + + G+ I+T +D+ ++G +F + P G +R G+F Sbjct: 61 EMPSGLMLGAGTKVVATQKNFSQGNMITTDNSMDWMIQGQGFFEVLLPDGSLAYSRAGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 DG +V++ +PV + +P + + + GE+S VI + + Sbjct: 121 TTDGDGRVVTSGAGFPVQPE----MNVPNDAQSLTISQDGEVSVRVRGQADNVVIGQLTI 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + I P D GV + +G LE SN N+ E+ +I Sbjct: 177 SDFINPSGLEPMGQNLFTETAVSGAPIQGNPGADGLGV-IVQGALETSNVNTTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML I Sbjct: 236 ETQRIYEMNSKVISSVDQ-MLNFINQ 260 >gi|331007439|ref|ZP_08330616.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] gi|330418746|gb|EGG93235.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] Length = 261 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 106/266 (39%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A +++L+++++N++N T+GF+ +V F +++ I+ Sbjct: 1 MNPALYVSKTGLSAQDRQLTSISNNLANASTIGFKRDRVNFEDLLYQIQRQPGGQSSQNT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V GS T LD A+ +F ++ P G TR+G+F Sbjct: 61 QLPSGLQLGTGVRVVATQKQFTGGSLQVTEQPLDLAINNRGFFQIQMPSGETAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + +G +V+ASG I IP+ + + G +S + + + + Sbjct: 121 HLNSNGDIVNASGFLL-----EPSISIPENTNNITISQDGIVSASILGEATPQELGQITI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G + + P +G ++ +G LE+SN + + EM MI Sbjct: 176 TDFVNPAGLQALGGNVFAQTAASGDPQTGTAGESGLGSIIQGSLENSNVDIVEEMVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ++ + +N+ Sbjct: 236 TQRAYEMNSKVVSTADQMLQFISQNL 261 >gi|332533173|ref|ZP_08409042.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas haloplanktis ANT/505] gi|332037455|gb|EGI73909.1| flagellar basal-body rod protein FlgG [Pseudoalteromonas haloplanktis ANT/505] Length = 262 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 110/266 (41%), Gaps = 29/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + +S +++N++N TVG++ + F +++ N + S Sbjct: 1 MNPALWISKTGLDAQQTDISVISNNLANASTVGYKKSRAIFEDLLYQNINQPGGRSSQDT 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ G+ ++T LD+ + G+ +F + P G I +R+G+F Sbjct: 61 EMPSGLMLGAGAKVVANQKEFTQGNMLTTENSLDWMISGEGFFEVLQPDGNIAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 DG +V++ Y + + +P + V + GE+S VI + + Sbjct: 121 TTDGDGRIVTSGAGYVIQPE----MNVPDDAQSITVSQDGEVSVRVAGQADNVVIGQLTI 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + + + P++ GV ++ +G LE SN N E+ +I Sbjct: 177 SDFINPSGLEPIGQNLYTETAVSGAPVQGNPGVEGLGSIIQGSLETSNVNVTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ M + + Sbjct: 237 TQRIYEMNSKVISAVDEMMSYINQQL 262 >gi|52785608|ref|YP_091437.1| flagellar basal body rod protein FlgG [Bacillus licheniformis ATCC 14580] gi|163119437|ref|YP_079022.2| flagellar basal body rod protein FlgG [Bacillus licheniformis ATCC 14580] gi|319645990|ref|ZP_08000220.1| FlgE protein [Bacillus sp. BT1B_CT2] gi|52348110|gb|AAU40744.1| FlgE [Bacillus licheniformis ATCC 14580] gi|145902944|gb|AAU23384.2| flagellar hook protein [Bacillus licheniformis ATCC 14580] gi|317391740|gb|EFV72537.1| FlgE protein [Bacillus sp. BT1B_CT2] Length = 263 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 111/262 (42%), Gaps = 25/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---IS 57 M S G++ + +L VA+N+SN +T G++ +V F ++V + Sbjct: 1 MLRSLYSGISGMKNFQTKLDVVANNISNINTAGYKKSRVTFKDIVSQQLSGASSSTANRG 60 Query: 58 FVASGKEYLSKEVGSF---------ISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V + L +GS +TG +LD + GD +F + S + TR G F Sbjct: 61 SVNGQQVGLGATIGSIDIIHTNAAPSTTGRQLDMTITGDGYFRVGSGDEVYYTRSGNFYR 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSV 163 +D+G LV+ G + VL + I IPQ + F++ G +S + + + L + Sbjct: 121 SDEGDLVTVDGLF-VLTANNGRINIPQDAQSFSIAPDGTVSYVDQNNENQTAGQISLATF 179 Query: 164 DMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + G + ++ + P E SG ++ LE SN + E +MI Sbjct: 180 SNTSGLSKAGDNLYRETLSSGDPQVVVPGEGGSG-KIQTSALEMSNVDLSEEFSEMIIAQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F S +I +++ + E + Sbjct: 239 RGFQSNAKIITTSDEILQELVN 260 >gi|327480021|gb|AEA83331.1| flagellar basal body rod protein FlgF [Pseudomonas stutzeri DSM 4166] Length = 246 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A+N++N T GFR + + + D + Sbjct: 1 MDKMLYVAMTGASQNARAQQAHANNLANISTTGFRRDFEQARSM--QVFGDSHPARVYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ TG +LD A+EG W A+++P G R G + G L +A G Sbjct: 59 SERPGTDFTPGTLQETGRDLDVAVEGQGWIAVQAPDGSEAYVRTGSLNIDVLGMLRTADG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PI IP + E +VG G IS + + + L + D Q + Sbjct: 119 -MPVMGNGG-PIAIPPE-EKVDVGHDGTISIRALGEDPNIVVTVDRIKLVNPDPQQ--LE 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P+E V V GFLE SN N++ EM ++ L+++F ++ E Sbjct: 174 KGADGLIRLKSGQPVEADGNVRVVSGFLETSNVNAVSEMTSILALSRQFELHVKMMRTAE 233 Query: 232 KSMLEAIRNI 241 R + Sbjct: 234 DDAAAMARVL 243 >gi|15887898|ref|NP_353579.1| flagellar basal body rod protein FlgG [Agrobacterium tumefaciens str. C58] gi|20141428|sp|Q44338|FLGG_AGRT5 RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|15155490|gb|AAK86364.1| flagellar basal-body rod protein [Agrobacterium tumefaciens str. C58] Length = 262 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 108/258 (41%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T G++ + +F++++ + N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + G+ I TG +LD A+ G WF +E+ G + +R G F Sbjct: 61 IVPEGANIGLGVQTSAVRNIHTQGNLIETGNKLDVAIIGQGWFQIEAADGSTLYSRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 DG+LV+ G Y V+ I IP + + G+++ + + + + Sbjct: 121 NKNADGNLVTVDG-YNVIPN----INIPTDAQDITITRTGQVTARIGNAADFTQLGQLTI 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ S P+ +D S VK+ +LE SN +++ E+ +I Sbjct: 176 ANFANEAGLKPLGDNLFSQTPASGAPVVGVPDDPSYGYVKQSYLEGSNVDAVKEITDLIT 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 AQRAYEMNSKVITTADEM 253 >gi|328948267|ref|YP_004365604.1| flagellar basal-body rod protein FlgG [Treponema succinifaciens DSM 2489] gi|328448591|gb|AEB14307.1| flagellar basal-body rod protein FlgG [Treponema succinifaciens DSM 2489] Length = 264 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 26/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S + + T+++N+SN +T GF+ + +F +++ Sbjct: 1 MVRSLWNAATGMNGQQMNIDTISNNLSNVNTTGFKQHRAEFEDLLYQNVKLAGTPATEDT 60 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S V G GS +TG + D A+ GD +F ++ G TRDG F Sbjct: 61 VTPVGHQMGSGVKVGATQRIMTQGSLQATGVDTDVAVVGDGFFRVQQYDGSWAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV----IATMGLYS 162 KV G LV+A+G V+ +P + + G + I G++ + + LY Sbjct: 121 KVDSTGQLVTANG-LRVMPEIIMPEGFQLETLSISDGGRVNIKVNGELEPVEVGQLELYR 179 Query: 163 VDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + G ++ I P D G+T K FLE SN + + EM QMI Sbjct: 180 FPNAVGLENTGDNLYKVTNASGEPIAGRPGIDGMGIT-KHKFLEMSNVSVVNEMVQMIVA 238 Query: 217 TQKFNSITTLIDENEKSMLEAI 238 + + + I ++ + A Sbjct: 239 QRAYEFNSKAIQTSDNMLQTAA 260 >gi|332298514|ref|YP_004440436.1| flagellar basal-body rod protein FlgG [Treponema brennaborense DSM 12168] gi|332181617|gb|AEE17305.1| flagellar basal-body rod protein FlgG [Treponema brennaborense DSM 12168] Length = 264 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 34/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S + + +++N+SN +T G++ +V+F +++ Sbjct: 1 MVRSLWTAATGMNGQQANIDAISNNLSNVNTTGYKQQRVEFEDLIYQNLKLAGTPATEDT 60 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G GS +TG + D A+ G+ +F ++ G TRDG F Sbjct: 61 VTPVGIQMGTGVKVGATQRIITQGSLQNTGVDTDMAVVGEGFFRVQQYDGSFAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQ--KDEIFNVGEKGEISQ------KGKVIATM 158 KV +G LV++ G + I +P+ V + G ++ + + Sbjct: 121 KVDMNGQLVTSEGLRVM-----PEIILPEGYNLSTLTVSDDGRVTVKIAGNDDPLTVGQL 175 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 LY + G ++ I P D GVT K FLE SN + + EM Q Sbjct: 176 ELYRFPNAVGLEATGSNLFKVTNASGAAIAGRPGFDGMGVT-KHKFLEMSNVSVVNEMVQ 234 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 MI + + + I ++ + A+ Sbjct: 235 MIVAQRAYEFSSKAIQTSDTMLSSAVN 261 >gi|307731362|ref|YP_003908586.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1003] gi|307585897|gb|ADN59295.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1003] Length = 252 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 15/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++N T GFR F V + + + Sbjct: 1 MDRLIYTAMSGSTQALEQQAIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV S G TG LD A+EG W A+++ G TR G + +G LV Sbjct: 61 TFVLSSTPGADYTPGPIQQTGNPLDVAIEGPGWLAVQTADGGEAYTRAGNLHIDQNGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+ VL P+ +P + +G G ++ V+ L V+ Sbjct: 121 NAT-NQVVLGNGG-PMAVPPGAQ-ITIGRDGTVTALTPGDPPTAVVTIDQLKLVNPDPQT 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P E V V LE SN N + M MI ++F T L++ Sbjct: 178 LTRGDDGLFRTADGNPAEADPTVAVAPASLEGSNVNPVSAMVAMITNARQFQMQTKLLES 237 Query: 230 NEKSMLEAIRNI 241 +K+ ++ + Sbjct: 238 ADKN-DQSANQL 248 >gi|260431748|ref|ZP_05785719.1| flagellar basal-body rod protein FlgG [Silicibacter lacuscaerulensis ITI-1157] gi|260415576|gb|EEX08835.1| flagellar basal-body rod protein FlgG [Silicibacter lacuscaerulensis ITI-1157] Length = 261 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 116/265 (43%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ T+++N++N +T G+ + +F+++ Sbjct: 1 MRALKIAATGMSAQQMRVETISNNLANMNTTGYNARRAEFADLHYQQMARAGTVNASDGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + G+ +TG++LD A+EG + + P G TRDG Sbjct: 61 VLPTGIQLGLGVRPAAVTVQLAQGALSATGSDLDIAIEGRGYLEVTLPNGQSAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G +PV+ I IP ++ GE+ + +G+++ L Sbjct: 121 KRSAEGLIVTSDG-FPVVPE----ITIPDDARSISINAAGEVYAYFDDTAEGQLLGEFTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S ++G + +E I TP ED G T+++G+LEDS+ +++ E+ ++I Sbjct: 176 ASFSNAKGLEAIGSNLFKETEASGAPIVGTPGEDGLG-TLRQGYLEDSSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAVDQMMGATTQ 259 >gi|238762358|ref|ZP_04623329.1| Lateral flagellar rod protein (FlgG-like) [Yersinia kristensenii ATCC 33638] gi|238699343|gb|EEP92089.1| Lateral flagellar rod protein (FlgG-like) [Yersinia kristensenii ATCC 33638] Length = 261 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 103/267 (38%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + I A + +++ +++N++N +T GF+ +V F ++ + + Sbjct: 1 MNPALWISKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRSPGSPLNQNT 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRF 106 S V VG+ T E D A+ G +F +E+ G+ TR G Sbjct: 61 ATPNGIQFGSGVKVVGTQKQFTVGNIKVTKGEFDVAIAGQGFFQIETADGGLAYTRAGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG L +A G P++ I++P +G+ G ++ + + + L Sbjct: 121 SINADGVLTNAQG-MPLIPQ----IELPAGANDLAIGKDGTVTARLGGEAEPAELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E + P E+ G ++ G LE SN + EM MI Sbjct: 176 VNFVNPAGLEAVGGNMYKETVASGTAVEGVPGEEAFG-QLEHGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLKFVTQKL 261 >gi|307293785|ref|ZP_07573629.1| flagellar basal-body rod protein FlgG [Sphingobium chlorophenolicum L-1] gi|306879936|gb|EFN11153.1| flagellar basal-body rod protein FlgG [Sphingobium chlorophenolicum L-1] Length = 262 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 103/265 (38%), Gaps = 30/265 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 + ++ A ++ +A+N++N +T F+ + F + Sbjct: 3 NAALHVARTGLDAQNTKMRVIANNLANVNTTAFKRDRADFETLAYQQIVAAGANSDSENK 62 Query: 56 -------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 S VA G+ TG LD A+EG +F ++ P G I TR G F Sbjct: 63 FATGLNLGSGVALQGTSKINAQGTLNQTGNTLDMAIEGSGYFQVQQPDGSIAYTRAGNFT 122 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLY 161 T +G +V++ G P++ I +P+ +G G +S + + + L Sbjct: 123 TTAEGVVVTSDG-LPLIPQ----ITVPEGATSITIGNDGTVSATLQGQTEPTQLGQVELA 177 Query: 162 SVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHL 216 S G + + TP ++G+ V+ G+LE SN N + E+ MI Sbjct: 178 SFMNPGGLQSTGGNLLKETAASGTPQVGVAGLDGRGVVRSGYLETSNVNVVEELVDMIET 237 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + A + + Sbjct: 238 QRAYEVNSKMIKATDEMLQYANQQL 262 >gi|187925760|ref|YP_001897402.1| flagellar basal body rod protein FlgF [Burkholderia phytofirmans PsJN] gi|187716954|gb|ACD18178.1| flagellar basal-body rod protein FlgF [Burkholderia phytofirmans PsJN] Length = 252 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 15/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++N T GFR F V + + + Sbjct: 1 MDRLIYTAMSGSTQALEQQAIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV S G TG LD A++G W A+++ G TR G V ++G LV Sbjct: 61 TFVLSSTPGADYTPGPIQQTGNPLDVAIQGPGWLAVQTADGGEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+ VL P+ +P E +G+ G +S V+ L V+ Sbjct: 121 NAT-NQVVLGNGG-PVSVPPGAE-ITIGKDGTVSALTPGDPPTAVVTVDQLKLVNPDPQT 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ + VT+ LE SN N + M MI ++F T L++ Sbjct: 178 MTRGDDGLFRTADGNAADADPAVTLAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLES 237 Query: 230 NEKSMLEAIRNI 241 +K+ ++ + Sbjct: 238 ADKN-DQSANQL 248 >gi|323697471|ref|ZP_08109383.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323457403|gb|EGB13268.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 258 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 20/258 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M+ S + L+ E R+S++A+N++N +T F+ K+ F + +D Sbjct: 1 MRDSTQSAIFGALSNELRMSSIANNLANVNTSAFKKDKLAFHDTFIRFAHDYLVDAKTYI 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 ++ + GS TG +LDFAL G +F+++ ++ TR G Sbjct: 61 RGEDMFPEGHIMAKARLSAQQADLSQGSMERTGNQLDFALSGPGFFSVQGDTAMLYTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F DG L + G YPV+ + P+ IPQ V ++G I G+ + + D Sbjct: 121 NFVTDGDGMLKTVDG-YPVM-VGGGPLIIPQGGR-IQVDDEGNIQVNGEPAGSFDVVDFD 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + R ++ + V+V +GF+E SN + EM MI + F T Sbjct: 178 SPELLERVGSNNYIMPTGGAQIP-PQDVSVAQGFIEKSNVEVVTEMVSMIETQRAFTMYT 236 Query: 225 TLIDENEKSMLEAIRNIA 242 +I + + I + Sbjct: 237 KMIQGDSDLDSKLINQVG 254 >gi|237653582|ref|YP_002889896.1| flagellar basal-body rod protein FlgF [Thauera sp. MZ1T] gi|237624829|gb|ACR01519.1| flagellar basal-body rod protein FlgF [Thauera sp. MZ1T] Length = 246 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 102/248 (41%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + VA N++N D GFR K V ++ + + +F Sbjct: 1 MDRLIYTAMTGAKGTMDQQAAVAHNLANVDATGFRAELHKLRAV--EVQTEALRTRAFTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G TG D AL G W A++ P G TR+G V+ +G L + G Sbjct: 59 DASVANDFTEGPLQFTGRPFDVALAGKGWLAVQMPDGSEAYTRNGSLAVSANGVLQTRDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 + PVL P+ IP +E +G G +S Q G V L V+ + + R + Sbjct: 119 R-PVLGDGG-PVTIPPDNE-ITIGADGSVSALQPDQPGVVNVVAQLKLVNPPEAQLVRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ P V V G+LE SN N + +M QMI L ++F T ++ E++ Sbjct: 176 DGLFRLQGGAPAPVDPNVRVAGGYLEGSNVNVVDQMVQMISLARQFEMQTRMLSTAEQND 235 Query: 235 LEAIRNIA 242 A R I Sbjct: 236 RSAARVIG 243 >gi|332284020|ref|YP_004415931.1| flagellar basal body rod protein FlgF [Pusillimonas sp. T7-7] gi|330427973|gb|AEC19307.1| flagellar basal body rod protein FlgF [Pusillimonas sp. T7-7] Length = 248 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 12/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ + +++N++N +T GFR + V Sbjct: 1 MDRIIYTAAGGAARVLEQQAVISNNLANVNTAGFREQMAIYRSVPVVGAAPSLPTRVSTV 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G + TG LD A+ GD WF++++P+G TR G F V + LV+ G Sbjct: 61 TSTPSSHMGQGVMVETGHALDAAITGDGWFSVQTPQGEAYTRAGEFAVNEQSLLVNLQG- 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRR 172 YPVL PI+IP++ G+IS G ++I + L + + + R Sbjct: 120 YPVLSADGAPIEIPER-GAVTFSGDGQISALGAGDRPNDIQLIGQLKLVNPQAAD--LVR 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + V + GF+E SN N M MI ++F +I + Sbjct: 177 GGDGLFRAANGQPAQADPEVRMIAGFVEKSNVNPAEAMVGMIANARRFEMQMKVIQDASS 236 Query: 233 SMLEA 237 + A Sbjct: 237 NAERA 241 >gi|296157455|ref|ZP_06840290.1| flagellar basal-body rod protein FlgF [Burkholderia sp. Ch1-1] gi|295892227|gb|EFG72010.1| flagellar basal-body rod protein FlgF [Burkholderia sp. Ch1-1] Length = 252 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 15/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++N T GFR F V + + + Sbjct: 1 MDRLIYTAMSGSTQALEQQAIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV S G TG LD A++G W A+++ G TR G + ++G LV Sbjct: 61 TFVLSSTPGADYTPGPIQQTGNPLDVAIQGPGWLAVQTTDGGEAYTRAGNLHIDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+ VL P+ +P E +G+ G +S V+ L V+ Sbjct: 121 NAT-NQVVLGNGG-PVSVPPGAE-ITIGKDGTVSALTPGDPPTAVVTVDQLKLVNPDPQT 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P + VT+ LE SN N + M MI ++F T L++ Sbjct: 178 MTRGDDGLFRTGDGNPADADQTVTLAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLES 237 Query: 230 NEKSMLEAIRNI 241 +K+ ++ + Sbjct: 238 ADKN-DQSANQL 248 >gi|159045792|ref|YP_001534586.1| flagellar basal body rod protein FlgG [Dinoroseobacter shibae DFL 12] gi|157913552|gb|ABV94985.1| flagellar basal-body rod protein FlgG [Dinoroseobacter shibae DFL 12] Length = 261 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 115/260 (44%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDID 53 + I A + R+ +++N++N +T G+ + +F+++ +D Sbjct: 1 MRALTIAATGMSAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQVKAPGTINASDGT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V G + GS TG +LD A+EG + + P G TRDG Sbjct: 61 ALPTGVQLGLGVRAAAVTVELSQGSLSQTGGDLDLAIEGKGYLEVTLPSGASAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G YPV+ I IP+ +V +GE+ + + +++ L Sbjct: 121 KRSAEGLIVTSDG-YPVVPE----IVIPEGTMRISVDAEGEVYAYFRDTVEPELLGQFSL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++G + E++ P + P ED G T ++G+LE S+ +++ E+ ++I Sbjct: 176 AGFTNAKGLEAIGSNLFMESNASGPPLIGVPGEDGLG-TFRQGYLEASSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + ++ ++ M Sbjct: 235 EAQRGYELNSKVMTAADQMM 254 >gi|251797436|ref|YP_003012167.1| hypothetical protein Pjdr2_3448 [Paenibacillus sp. JDR-2] gi|247545062|gb|ACT02081.1| protein of unknown function DUF1078 domain protein [Paenibacillus sp. JDR-2] Length = 270 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 111/268 (41%), Gaps = 30/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V FS+++ + + + Sbjct: 1 MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKGGRVMFSDILSQTTSGVTASLEGEQ 60 Query: 61 SGKEY-------------LSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGR 105 G GS ++T D ++GD +FA+ + LTR G Sbjct: 61 GGVNAKQIGLGVTISAIDTIHTPGSAMTTNVPTDLRIDGDGFFAVSAGGDSPTYLTRAGN 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKG-KVIATMGLY 161 F + + LV+A G + VL PI + + F++G+ G I + G + +A +G+ Sbjct: 121 FTLDGNRQLVNADGMF-VLSSDGEPIVLGEDVTSFSIGQDGSILAVTADGTEAVAQLGVV 179 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----------VKRGFLEDSNANSMYEMG 211 V G + + P + VT + G LE SN + E Sbjct: 180 KVVNPSGLEKVGGNLYRVTANANPDGEFEIVTADDPELGTGAIIAGQLEMSNVDLTNEFT 239 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + F + + +I +++ + E + Sbjct: 240 EMIVAQRGFQANSRIITTSDEILQEVVN 267 >gi|83594175|ref|YP_427927.1| flagellar basal body rod protein FlgG [Rhodospirillum rubrum ATCC 11170] gi|83577089|gb|ABC23640.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 261 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 31/259 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + NIG LA + + +++N++N +T + + +F +++ S Sbjct: 1 MRALNIGATGMLAQQTNVEVISNNIANMNTTAYTRRRAEFHDLLYQNLRRAGSNSSDTGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y E GS ST LD A++G +F ++ P G TRDG F Sbjct: 61 IVPTGVQLGLGVKTAAVYRITEQGSVTSTNNALDLAIQGKGYFQIDLPSGETAYTRDGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGL 160 +++ +G +V+ G Y V + IP E + GE+ G+ + Sbjct: 121 QLSPNGEIVTHDG-YRVTGLG----AIPTNAESITINPTGEVLYKIDGQTALVNAGQIQT 175 Query: 161 YSVDMSQGFVRRENSGISPNI-PPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G ++ ++ P + G T+ +G+LE SN N + E+ ++I Sbjct: 176 AIFPNDAGLNAIGDNYLTETAGSGAPTVGVPGSVGFGTILQGYLESSNVNVVSEITELIS 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +++ + Sbjct: 236 AQRAYEMNSKVITTSDEML 254 >gi|225158946|ref|ZP_03725258.1| flagellar basal-body rod protein FlgG [Opitutaceae bacterium TAV2] gi|224802441|gb|EEG20701.1| flagellar basal-body rod protein FlgG [Opitutaceae bacterium TAV2] Length = 260 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 104/264 (39%), Gaps = 29/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S A + L+T+A+N++N +T GF+ K++F +++ + + Sbjct: 1 MNLSLYSAATGMEAQQLNLNTIANNLANVNTAGFKRSKIEFHDMLYQSPRNAGAETGNGN 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 G ++ +LD A++G+ +F ++ P G TRDG F Sbjct: 61 LLPTGVEIGNGSRISSTAKIFTQGQLTASSEKLDIAIQGEGFFEIQRPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSV 163 K +G +V+A G PVL +P + + G+++ G + L Sbjct: 121 KQDPNGQIVTADG-LPVLSGFQA---VPNGTTDITISDTGDVTYTNAAGNETFRLTLTRF 176 Query: 164 DMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 G + E P E G T ++ ++E SN N + EM +I Sbjct: 177 ANPAGLRSLGGNLYEETPASGTPETGQPGEQGFGTT-QQYYIESSNVNIVEEMVNLIVAQ 235 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ ML+ + + Sbjct: 236 RAYEVSSKAIQTSDE-MLQNVTQL 258 >gi|34498338|ref|NP_902553.1| flagellar basal-body rod protein FlgG [Chromobacterium violaceum ATCC 12472] gi|34104192|gb|AAQ60551.1| flagellar basal-body rod protein FlgG [Chromobacterium violaceum ATCC 12472] Length = 260 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 97/265 (36%), Gaps = 32/265 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I + +L V++N++N +TVGF+ + F ++ Sbjct: 1 MMRALYIAKTGMDTSQFQLDVVSNNLANVNTVGFKKSRGIFEDLYYQTLRQPGGQLANGN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + A+ G TG LD ++GD +F L P G +R+G+F Sbjct: 61 ANPTGLQVGTGAAAVASSRIFTQGPPQQTGQPLDLQIQGDGFFRLLQPDGTTAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 + +G++V+ G + I IP + V G + S + T+ L Sbjct: 121 QRDANGNVVNPDGL-----PLNPNINIPATAQQITVSSAGVVQYTLAGSAAPQTAGTILL 175 Query: 161 YSVDMSQGFVRRENSGISPNI------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + QG N+ P D G +K GFLE SN N E+ MI Sbjct: 176 TTFINPQGLQSIGNNLYLQTAASGDPQDGNPQTDDRGA-IKSGFLESSNVNVTEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + F + + ++ + + Sbjct: 235 TAQRSFEMNSRAVTTADQMLQKLSN 259 >gi|150395485|ref|YP_001325952.1| flagellar basal body rod protein FlgG [Sinorhizobium medicae WSM419] gi|150027000|gb|ABR59117.1| flagellar basal-body rod protein FlgG [Sinorhizobium medicae WSM419] Length = 262 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 106/267 (39%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + +I A + L +A+N++N +T G++ + +FS+++ + N +Q Sbjct: 1 MKALSIAATGMNAQQLNLEVIANNIANINTTGYKRARAEFSDLLYQTERAQGVPNRSNQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + GS ++TG + D AL G WF +E+P G + TR G F Sbjct: 61 IVPEGAIIGLGVQTSAVRNLHIQGSLVNTGNDYDLALVGRGWFQIETPDGETVYTRSGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 G LV+ G V + +PQ G++ + + I + + Sbjct: 121 NTNATGQLVTIDGYTVVPG-----VTVPQDATEIVFTSSGQVMVRIGNDTELQEIGQLTV 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + R+ I TP D +K+ +LE SN + + E+ +I Sbjct: 176 ANFVNEAGLEPMGENLFRQTPASGDAIVGTPA-DPGFAQIKQNYLESSNVDPVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 235 SAQRAYEMNSKIIQAADEMAATVSKNL 261 >gi|224372658|ref|YP_002607030.1| flagellar basal-body rod protein [Nautilia profundicola AmH] gi|223589304|gb|ACM93040.1| flagellar basal-body rod protein [Nautilia profundicola AmH] Length = 261 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 23/261 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVG------AIKND 51 M + A + RL+ +++N++N +T GF+ + F + ++N+ Sbjct: 1 MINGYYDATGAMVTQFNRLNVISNNLANVNTAGFKQDDIIIGDFERLFSEKRDNLPLENN 60 Query: 52 IDQKISFVA--------SGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTR 102 + F+ +EY + ++G T LD AL E + +FA+ +P G LTR Sbjct: 61 TKEAAKFINRNLNKVPIVVEEYTNYDIGDLQKTSNPLDIALKEKNQFFAINTPNGEKLTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G F + +G LV+ G Y VLD + PIQ+ + + G I Q + +AT + Sbjct: 121 AGNFNLDANGYLVTKDG-YQVLDEQNNPIQLAP-SYPVTIDKNGNIYQNNEKVATFKIVK 178 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +D + ++ + IP T D T+ +GFLE SN N + EM +I + Sbjct: 179 IDNLNTLKKVGDN-MFDFIPDTATIDTKNSTL-QGFLEKSNVNPIREMTDLIETNRLVEQ 236 Query: 223 ITTLIDENEKSM-LEAIRNIA 242 ++ + +AI +A Sbjct: 237 YQKVMTTFMDDLNRDAIEKLA 257 >gi|299066528|emb|CBJ37718.1| Flagellar basal-body rod protein (Distal rod protein) [Ralstonia solanacearum CMR15] Length = 263 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 106/267 (39%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M + +G A + L T+A+N++N +T GF+ +V F+++V I Sbjct: 1 MFDALYVGATGMQAQQLNLDTIANNLANVNTTGFKKSRVSFTDLVAQEAGRIQPTSDASL 60 Query: 56 ---------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGR 105 + V + G+ TG+ D A++G+ + + P G TR G Sbjct: 61 GPLSALPGLGAGVGISSVAKLFDTGNMQQTGSSFDVAIQGEGFLEVALPDGSRAFTRGGT 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKV----IATMG 159 KV DG LV+ +G Y V I +P + + G IS + + Sbjct: 121 LKVNSDGMLVTQAG-YVVKPG----ISVPSNAKDLTIAADGHVRISVPNQSSPIDAGQLE 175 Query: 160 LYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214 L + + ++ + + P+ +G T +GFLE SN + EM ++ Sbjct: 176 LAHFASPGMLLAQGDNLYRASDTSGEPVVGKAGQDNLGTFAQGFLEGSNVKMIDEMVGLM 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ +++ + + N+ Sbjct: 236 VAQRAYEANVKVVQASDEILG-MVNNL 261 >gi|317050614|ref|YP_004111730.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] gi|316945698|gb|ADU65174.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] Length = 259 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 19/256 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 M + + ++L A+N++N +TVGF+ + F + D ++ Sbjct: 1 MVNGLYTSASGMVLQSRKLDASANNLANVNTVGFKKDIISVDNFRAKSTTREEDAWRRTL 60 Query: 58 FVAS-------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 F + K ++ G+ TG LD + G+A+ +++P G TR G ++ Sbjct: 61 FNETINNTHNIAKIHVDHSQGALHQTGNSLDVGINGNAFLVVDTPFGERYTRGGNLQIDS 120 Query: 111 DGSLVSASGKYPVL-----DMASVP--IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 +G L + G YP+ D A P I +P+ +I + +GEI + IAT+ L Sbjct: 121 EGRLTTKEG-YPLKAALEEDDAEGPAHIFLPEASDII-INAQGEIFVDEEFIATLSLVRF 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + + + ++ + +G+LE SN N + EM M+ L + F++ Sbjct: 179 EDERDLRKVGFNQLARVSADVEAYPAEHFELHQGYLESSNVNIVREMTDMVELNRSFSAY 238 Query: 224 TTLIDENEKSMLEAIR 239 +I ++++ ++ Sbjct: 239 QKMISSIDETVSTLLQ 254 >gi|332525065|ref|ZP_08401245.1| flagellar basal-body rod protein FlgF [Rubrivivax benzoatilyticus JA2] gi|332108354|gb|EGJ09578.1| flagellar basal-body rod protein FlgF [Rubrivivax benzoatilyticus JA2] Length = 240 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 101/249 (40%), Gaps = 15/249 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A +R +A+N++N T GFR F V ++ D + Sbjct: 1 MDRLIYLSMGGAKATMERQDVLANNLANASTTGFRAELQAFRAV--PVRGDGASTRVYAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G TG LD A+ G +W A++S G TR G +V+ +G LV+ SG Sbjct: 59 ESTVGHDDQSGPLQVTGRNLDVAMRGKSWLAVQSLDGTEAYTRAGSMEVSAEGVLVTPSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN 174 PVL PI +P +G G +S K + I + L + + + R Sbjct: 119 -LPVLGDGG-PITVPANAT-LTIGADGTVSAAANGGKPQAIGRLKLVTPEAP---LTRGT 172 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ L ++ G LE SN + + M QMI ++F ++ E+ Sbjct: 173 DGLFRAADGD-LPADPAARLQDGALEGSNVSPVETMVQMISAARQFEQQIKMLQTAEQKE 231 Query: 235 LEAIRNIAS 243 A + +A+ Sbjct: 232 QGATKLLAT 240 >gi|323490149|ref|ZP_08095369.1| fagellar hook-basal body protein [Planococcus donghaensis MPA1U2] gi|323396197|gb|EGA89023.1| fagellar hook-basal body protein [Planococcus donghaensis MPA1U2] Length = 255 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 117/254 (46%), Gaps = 17/254 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +T+G++ + F +++ ++ V Sbjct: 1 MLRSMYSGVSGMKNFQTKLDVIGNNIANVNTIGYKKSTINFQDLLSQNMSNSGTNPMQVG 60 Query: 61 SGKEY----LSKEVGSFISTGTELDFALEGDAWFALESP-----RGIILTRDGRFKVTDD 111 G ++ GS +STG E D A+ G+ +F ++ P G LTR G F VT Sbjct: 61 LGTTTSAINVNHNPGSVMSTGIETDLAIMGNGFFVVQDPEAPGADGQFLTRSGSFSVTTA 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMS 166 G+LVSA G Y VL+ A PI + D F++ GE+ G IA +G+ + + Sbjct: 121 GNLVSAQG-YNVLNSAGAPINVAGYDS-FSINRSGEVVGRQADGTETTIAFVGISNPENP 178 Query: 167 QGFVRRENSGIS-PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 +G + S P PT L+ + G LE SN + E +MI + F + + Sbjct: 179 EGLKKVGGSMYEVPPNTPTQTAALANTEIGSGMLEMSNVDLTEEFTEMIIAQRGFQANSR 238 Query: 226 LIDENEKSMLEAIR 239 I +++ + E + Sbjct: 239 TITTSDEILQEVMN 252 >gi|327478811|gb|AEA82121.1| flagellar basal-body rod protein FlgG [Pseudomonas stutzeri DSM 4166] Length = 261 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 111/266 (41%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A ++ ++TVA+N++N +T GF++ + F ++ I+ Sbjct: 1 MNSALWVSKTGLAAQDKAMATVANNLANVNTNGFKSDRAVFEDLFYVIEKQPGAQADEIN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V GS +TG +D A+ G +F +E+P G I T +G+F Sbjct: 61 TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIVGRGFFQVEAPNGDIFYTENGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ +G +V+A G + I++P+ F VG G ++ + + L Sbjct: 121 QLNAEGMMVNAQGL-----PLNPAIEVPEGSTGFTVGSDGIVTAVLAGDTLPSELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + P E+ G +K+G LE SN + M MI Sbjct: 176 VNFTNPGGLEALGGNLYRETVASGEPVEGVPGEEGLG-QLKQGVLEGSNVQVVEAMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + + ++D M + + Sbjct: 235 AIQRAYEANAKVLDAAS-GMQQFLNQ 259 >gi|196249722|ref|ZP_03148418.1| flagellar basal body rod protein [Geobacillus sp. G11MC16] gi|196210598|gb|EDY05361.1| flagellar basal body rod protein [Geobacillus sp. G11MC16] Length = 295 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 37/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVG----------- 46 M + LA ++R + +N++N +T G++ F E++ Sbjct: 20 MLRGLYTAASGMLAQQRRGDWLTNNLANAETPGYKADAGAMRAFPELLMSRLEDESIPSA 79 Query: 47 -----AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDA 88 + I + V + + + G TG D AL G Sbjct: 80 PPRAVPTQTAIGLLNTGVYTQELIPNFRQGDIKETGLSTDVALVDGQVPVDPTTGERGTL 139 Query: 89 WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +FA+E+ +G TR+G F ++ DG L + G + VLD I IP E F V + G Sbjct: 140 FFAVENGQGETRYTRNGHFTLSPDGYLTTQDG-WNVLDGNGERIAIP--SESFTVRDDGT 196 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANS 206 I+ + + IA +G+ + V+ N P P + VK+GF+E SN + Sbjct: 197 ITAENRTIARLGVVFAANPKTVVKEGNGLFRSTEGPLPQAPGNVTYMVKQGFIERSNVDI 256 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + +I ++S+ +A+ + Sbjct: 257 EQTMTDLLAAYRAFEANQKIIQAYDRSLDKAVNEVG 292 >gi|187478187|ref|YP_786211.1| flagellar basal body rod protein FlgG [Bordetella avium 197N] gi|115422773|emb|CAJ49301.1| flagellar basal-body rod protein [Bordetella avium 197N] Length = 261 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 101/266 (37%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S I + + + ++ N++N T GF+ + F +++ ++ Sbjct: 1 MMRSLWIAKTGLESQQTSMDVISHNLANVQTNGFKRERAVFQDLMYQTLRQPGAQVGDAN 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + + G+ +TG E+D A++G +F ++ P G TRDG Sbjct: 61 QLPTGLQLGTGARVAATQRLHSAGNLNNTGAEMDVAIQGRGFFQVDLPDGTQAYTRDGGL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------GKVIATMG 159 + +G L + G + PI +P + ++G +S I + Sbjct: 121 GMDQNGQLTTMGGY-----VIQPPINVPDNALSMAINKEGVVSVTLPGNAGVNVQIGQLQ 175 Query: 160 LYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + + G + E P P D +G ++ + ++E SN N E+ M Sbjct: 176 VATFINPAGLQSVGENLYLETDASGPANLLQPGADGAG-SIMQNYVETSNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + +++ + + Sbjct: 235 ITAQRAYEMNSKAVKTSDEMLARLTQ 260 >gi|222147571|ref|YP_002548528.1| flagellar basal-body rod protein [Agrobacterium vitis S4] gi|221734559|gb|ACM35522.1| flagellar basal-body rod protein [Agrobacterium vitis S4] Length = 263 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 99/267 (37%), Gaps = 32/267 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I A + L +++N++N +T GF+ + +FS+++ + + Sbjct: 1 MRALAIASTGMNAQQTNLEVISNNIANINTTGFKKSRAEFSDLLYQTEKAVGVANRANQS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGR 105 V + E G T ELD A+ G + ++SP G TR G Sbjct: 61 TVPEGANIGLGVQTAAVRTMNEQGELSETSNELDVAIVGRGYLQVQSPDGATTFYTRAGA 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMG 159 DG+LV+ G + I IP + E GE+S + + Sbjct: 121 LNKDSDGNLVTTEGYKII-----PNITIPTDATEVKISESGEVSVLQGDSSTYTTLGQLE 175 Query: 160 LYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 + G ++ P+ + G +K+G+LE SN +S+ E+ +I Sbjct: 176 TSAFVNPAGLKAIGDNLFQETASSGNPINGVPGDAGYGYLKQGYLESSNVDSVTEITSLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ +N+ Sbjct: 236 SAQRAYEMNSKVITTADEMAQIVSKNL 262 >gi|134095096|ref|YP_001100171.1| basal-body rod protein [Herminiimonas arsenicoxydans] gi|133738999|emb|CAL62047.1| Flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Herminiimonas arsenicoxydans] Length = 246 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 12/249 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ +TV N+SN T GFR F V + N +FV Sbjct: 1 MDRLIYTAMTGAKQILEQQATVTHNLSNVSTTGFRAQLDTFRAV--PVVNAALPTRTFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 G F TG +LD A++G W A+E G TR G KV ++G L + SG Sbjct: 59 DSTVGNDFRAGPFQQTGRDLDVAIQGKGWLAVERADGTEGYTRSGSLKVNENGVLQTQSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRE 173 VL PI IP + + + G IS G+ I L V+ + ++R Sbjct: 119 -LNVLGDGG-PISIPPDVQ-ITIAKDGTISSVESGSKPGQTIQVGRLKLVNPDEANLKRA 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + G+ + + V++ G +E SN N + M MI L ++F ++ E + Sbjct: 176 DDGLFVTKDGEDVAADADVSLVSGAVEGSNVNVVDAMVNMITLARQFELHMNMLKHAESN 235 Query: 234 MLEAIRNIA 242 +A +A Sbjct: 236 AAKATEFLA 244 >gi|171321839|ref|ZP_02910740.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria MEX-5] gi|171092877|gb|EDT38129.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria MEX-5] Length = 252 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M + + + VA+N++N T GFR + V +D Sbjct: 1 MDRLIYTAMTGASQSLDQQAVVANNLANASTTGFRAQLATYRAVPMNFGDGSTSDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W A+++ G TR G V ++G LV Sbjct: 61 TYVLASTPGADYAPGPITRTGNPLDVAVQGAGWLAVQTADGSEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVIGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LARGNDGLFRTADGNPADSDPSVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|302383956|ref|YP_003819779.1| flagellar basal-body rod protein FlgG [Brevundimonas subvibrioides ATCC 15264] gi|302194584|gb|ADL02156.1| flagellar basal-body rod protein FlgG [Brevundimonas subvibrioides ATCC 15264] Length = 262 Score = 207 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 110/260 (42%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + + A + + +++N++N +TVG++ + +F +++ + + S Sbjct: 1 MRALRTAASGMAAQQLNVEVISNNIANMNTVGYKRQRAEFQDLIYQNVERMGAQSSSQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V +G Y E G+ TG++ D A++G +F + P G I TR G F Sbjct: 61 VVPTGIQVGLGVKAGSVYRITEQGTPTQTGSDYDVAIDGQGYFQITMPSGEIGYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 ++ +G LV+ G Y V I IPQ + + G++ S + ++ + L Sbjct: 121 SLSGEGQLVTEDG-YAVEPA----ISIPQDAIDVTISKTGQVQVITAGSPEPAIVGQLEL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ + P TP E G + +G+ E SN +++ E+ +I Sbjct: 176 ATFFNEAGLEAIGDNLLLETAASGPATTGTPGETGFG-QLLQGYTEASNVDAVTEISALI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I ++ M Sbjct: 235 IAQRAYEMNSKVITTADEMM 254 >gi|325291939|ref|YP_004277803.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3] gi|325059792|gb|ADY63483.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3] Length = 262 Score = 207 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 106/258 (41%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T G++ + +F++++ + N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + G+ I TG +LD A+ G WF +E+ G + +R G F Sbjct: 61 IVPEGANIGLGVQTSAVRNIHTQGNLIETGNKLDVAIIGQGWFQIEAADGSTLYSRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 DG+LV+ G Y V+ I IP + + G+++ + + + + Sbjct: 121 NKNADGNLVTVDG-YNVIPN----INIPTDAQDITITRTGQVTARIGNAADFTELGQLTI 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ S +D S +K+ +LE SN +++ E+ +I Sbjct: 176 ANFANEAGLKPLGDNLFSQTPASGAAVIGVPDDPSYGYIKQSYLEGSNVDAVKEITDLIT 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 AQRAYEMNSKVITTADEM 253 >gi|254473318|ref|ZP_05086715.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] gi|211957434|gb|EEA92637.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] Length = 262 Score = 207 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A ++ L +++N++N +T F+ + +FS+++ + Sbjct: 1 MKALAIAATGMSAQQKNLEVISNNIANMNTTAFKASRAEFSDLLYQMDRAAGVSNRGGAA 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q+ V + G T D A++G WF + P G TR G F Sbjct: 61 PVPEGIQQGLGVKTAAIRELHSKGPLNHTTNTFDLAIDGQGWFEVVGPDGEALYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKV---IATMGL 160 V +G+LV+ G Y V I +P V E GE+ G I + L Sbjct: 121 NVNGEGALVTLDG-YEVQPG----ITVPIDAVKITVNESGEVFATYADGNPATSIGQLSL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 S G + P ++G +++G+LE +N + + E+ +I Sbjct: 176 TSFVNDAGLRAIGGNLFRETEASGAPNTGIAGEGPLGVIRQGYLEGANVDPVKEITSLIS 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I + Sbjct: 236 AQRGYEMNSKVIQAADDM 253 >gi|255261552|ref|ZP_05340894.1| flagellar basal-body rod protein FlgG [Thalassiobium sp. R2A62] gi|255103887|gb|EET46561.1| flagellar basal-body rod protein FlgG [Thalassiobium sp. R2A62] Length = 261 Score = 207 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 111/265 (41%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ +++N++N +T G+ + +F+++ Sbjct: 1 MRALQIAATGMAAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQIARPGTINAADGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + G+ +TG +LD A+EG+ + + P G TRDG Sbjct: 61 VLPTGVQLGLGVRPTAVSMILSQGALSATGGDLDVAIEGEGYLEVTLPNGNAAYTRDGGL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K T DG +V++ G V D I IP+ ++ +GEI + +++ L Sbjct: 121 KRTGDGLIVTSDGFPVVPD-----ITIPRDARSISINAEGEIYGYFTDRVEPELLGQFTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G N+ P+I P +D GV +++G+LEDS+ + + E+ +I Sbjct: 176 SGFTNPRGLEAIGNNLFLETSASGPSIVTEPGQDGLGV-LRQGYLEDSSVDPVKEVTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + ++ Sbjct: 235 EAQRGYELNSKVITAADQMLSSMVQ 259 >gi|119477951|ref|ZP_01618051.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] gi|119448864|gb|EAW30106.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] Length = 261 Score = 207 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 110/266 (41%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + RL+T+++N++N TVG++ V F +++ I+ + S Sbjct: 1 MNQALWISKTGLSAQDTRLATISNNLANAATVGYKRDSVVFEDLLYQIRRQPGAQSSQNT 60 Query: 58 ------FVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V +G + + GS T LD A+ G +F + P G +R+G+F Sbjct: 61 QLPSGLQVGTGVRVIGTQKEFSDGSVQITEKPLDLAIVGRGFFEILMPDGTSAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 ++ DG +V+A G I +P + ++ G + + + + + Sbjct: 121 QINADGEIVNARGLLL-----QPSITVPDDAQTVSISSDGIVEAQIAGQAAAQTLGNITV 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G ++ TP + G+ +++G LE+SN + + E+ MI Sbjct: 176 TNFINPTGLQSIGSNLFIETAASGTPQQGEPGIDGLGRLEQGALENSNVDVVEELVSMIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + +N+ Sbjct: 236 TQRTYEMNSKVISTADQMLQYISQNL 261 >gi|323703191|ref|ZP_08114844.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] gi|323531850|gb|EGB21736.1| fagellar hook-basal body protein [Desulfotomaculum nigrificans DSM 574] Length = 260 Score = 207 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 117/263 (44%), Gaps = 28/263 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 + + G + A + +L T+ +N++N +T ++ +++F+E++ D Sbjct: 2 IIKTLATGASGMRAFQMKLDTIGNNIANINTTAYKRSRIEFAEMMRQAMGDQGIPAASDP 61 Query: 54 --QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVT 109 S V E G + TG +LD A+EG+ +F + SP TRDG F + Sbjct: 62 RPAGGSGVKMVSVARLVEQGDLLQTGRDLDLAIEGEGYFKVISPEDDREYYTRDGCFYLN 121 Query: 110 DDGSLVSASGKY-----PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 ++G +V+A+G + D V I+I +K ++ +G+ + I + LY+ Sbjct: 122 NEGVVVNANGYKLEPEINLKDGNYVAIRIDEKGKVQGKTAEGDF----QDIDEITLYTFP 177 Query: 165 MSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + N+ SP TP ED G+ +++G+LE SN + EM MI + Sbjct: 178 APANLLDEGNNLYSPTTASGEATEGTPGEDGVGL-IRQGYLERSNVDLAQEMLGMIEAQR 236 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + I ++ M + N+ Sbjct: 237 AYAANARTIQTADE-MWDRANNL 258 >gi|260772275|ref|ZP_05881191.1| flagellar basal-body rod protein FlgF [Vibrio metschnikovii CIP 69.14] gi|260611414|gb|EEX36617.1| flagellar basal-body rod protein FlgF [Vibrio metschnikovii CIP 69.14] Length = 249 Score = 207 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + A+N++N T GFR ++ + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRAD-LEQARSMQAYGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG ELD ++GD W ++ G LTR G ++ +G L++ +G Sbjct: 59 TERPGHRFDQGSVITTGRELDITIQGDGWISVLDKTGNEGLTRSGNLRIDQNGLLLNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + + ++ + L D + + Sbjct: 119 -HLVLGELGAPITLPIPLNKVEIGNDGTISVRPQGAPADAMEIVDRIKLVKPDN-RSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P + V V G LE SN N++ EM +I L ++F ++ E Sbjct: 177 DINGLFRAKDPNAEYVADATVKVLTGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAE 236 Query: 232 KSMLEA 237 + M +A Sbjct: 237 E-MDKA 241 >gi|332162899|ref|YP_004299476.1| Lateral flagellar rod protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604254|emb|CBY25752.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. palearctica Y11] gi|325667129|gb|ADZ43773.1| Lateral flagellar rod protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863349|emb|CBX73472.1| flagellar basal-body rod protein flgG [Yersinia enterocolitica W22703] Length = 261 Score = 207 bits (529), Expect = 9e-52, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 104/267 (38%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + + A + +++ +++N++N +T GF+ +V F ++ + + Sbjct: 1 MNPALWVSKTGLAAQDAKMNAISNNLANVNTDGFKRDRVVFEDLFYQNQRTPGAPLDQNN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRF 106 S V VG+ T +LD A+ G +F +E+ G+ TR G Sbjct: 61 ATPNGIQFGSGVKVVGTQKQFTVGNIKVTKGDLDVAIAGQGFFQVETSDGGLAYTRAGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + DG L +A G P++ I++P + +G+ G ++ + + + L Sbjct: 121 SINADGVLTNAQG-LPLIPQ----IELPAGAKDLAIGKDGTVTARLGGDAESAELGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E + E+ G ++ G LE SN + EM MI Sbjct: 176 VNFVNPAGLEAVGGNMYKETVASGAAVEGVAGEEAFG-QLEHGSLEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLKFVTQKL 261 >gi|197335019|ref|YP_002156699.1| flagellar basal-body rod protein FlgF [Vibrio fischeri MJ11] gi|197316509|gb|ACH65956.1| flagellar basal-body rod protein FlgF [Vibrio fischeri MJ11] Length = 249 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + ++N++N T GFR ++ + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRSNNLANVSTTGFRAD-LEQARSMQAYGEGLPTRV-FNM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + S GS I+TG +LD +EGD W ++ G LTR G K+ + G L++ SG Sbjct: 59 TERPGSSFSQGSVITTGRDLDLTIEGDGWISVMDNTGREGLTRAGNLKIDETGLLMNGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P + + G IS + + + L D + + Sbjct: 119 -HLVLGENDAPITLPLPIAKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKTDN-RDLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P + + +T+ G LE SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRSKNPGATFDADANITLLSGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAE 236 Query: 232 KSMLEA 237 + M +A Sbjct: 237 E-MDKA 241 >gi|224825779|ref|ZP_03698883.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] gi|224602003|gb|EEG08182.1| flagellar basal-body rod protein FlgG [Lutiella nitroferrum 2002] Length = 262 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 103/266 (38%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I A + RL +A+N++N +TVGF+ ++ F ++ ++ ++ Sbjct: 1 MNPALWISKTGIQAQDARLGAIANNLANVNTVGFKRDRMVFEDLFYQVERQPGARVDANN 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + GS +TG LD A+ G + ++ G TR G+ Sbjct: 61 ASPSGVQLGNGTRLLGTQKVFTSGSITTTGQALDVAIVGQGFLQVQMSNGETGYTRAGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 +V DG LV+A G V I +P ++GE G +S I + L Sbjct: 121 QVNSDGQLVNAQGLPIV-----PAITVPATATSVSIGETGTVSITQSGSTAQTEIGQLTL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G + ++ TP G +K+G LE SN + EM MI Sbjct: 176 ANFVNPTGLLALGDNLFQETTASGTPTVGNPGSDALGKLKQGALEGSNVQVVEEMVDMIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + T ++ + M +++ Sbjct: 236 AQRTYEMNTKVLSAADNMMQYLAQSV 261 >gi|90423018|ref|YP_531388.1| flagellar basal body rod protein FlgF [Rhodopseudomonas palustris BisB18] gi|90105032|gb|ABD87069.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB18] Length = 254 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 14/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + IGL+ Q+ LE+++ VA+N++N +T GF+ K F E + + D++ Sbjct: 1 MENALLIGLSRQMTLERQMDVVANNVANVNTTGFKADKSLFQEYLSPGAHEDNFIGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V + G T LD A++G+A+ A+++P G TRDG ++ G LV Sbjct: 61 VSYVQDRATFHDFSSGPLEQTKNPLDVAIDGNAFLAVQTPAGERFTRDGGLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGF 169 +ASG Y VL PI D+ + + G + S + + L + +Q Sbjct: 121 TASG-YQVLGTNG-PIVFQPTDKEITIADDGNVTVLEGSSAVDSLRGKLRLVNFAEAQRL 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ E S + P + V +G++E SN N++ EM +MI +T+ + I++++ + Sbjct: 179 LK-EGSNLYSAGPGAAAQPALTARVHQGYIEKSNVNAVAEMSKMIEVTRAYTQISSMLQQ 237 Query: 230 NEKSMLEAIRNIA 242 A+ +A Sbjct: 238 QGDLRKTALEKLA 250 >gi|221635450|ref|YP_002523326.1| flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Thermomicrobium roseum DSM 5159] gi|221157298|gb|ACM06416.1| flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Thermomicrobium roseum DSM 5159] Length = 248 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 15/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV-----GAIKNDI 52 M + A +A R T+A N++N +T G+R + F ++ + I Sbjct: 1 MIRTIYQAAAGMMAQFARQLTLATNLANIETPGYRQQESTIRDFQQMFLLRLGRGEASPI 60 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + V K + GS I TG LD AL G A+FA+++P G+ TRDGRF++ Sbjct: 61 GTLSTAVRWDKPLVDLRQGSLIETGRPLDLALAGRAFFAIQTPDGVEYTRDGRFQLDAQR 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 LV+A G +PVL P+ +P D V G I +V+ + L F Sbjct: 121 RLVTADG-HPVLGEQG-PLVLPAGD--IWVEPDGTILVGEQVVGRLLLVEFPPDAQFEPV 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + + P E V +GFLE SN + + M+ T+ + + ++ Sbjct: 177 AGNRYRTDATGAPSE---TTGVSQGFLEASNVDLTQTLTDMLAATRSYQLAARSLQLADE 233 Query: 233 SMLEAIRNIA 242 ++ A+ ++ Sbjct: 234 TLRLAVNSVG 243 >gi|294140186|ref|YP_003556164.1| flagellar basal-body rod protein FlgF [Shewanella violacea DSS12] gi|293326655|dbj|BAJ01386.1| flagellar basal-body rod protein FlgF [Shewanella violacea DSS12] Length = 247 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 109/250 (43%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF+ ++ + + A + ++ F Sbjct: 1 MDKLLYVAMSGAKQNMNSLAVRANNLANANTDGFKAD-MEQARSMQAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG +LD A++GD W A++S G TR G G L + G Sbjct: 59 TESPSADFAAGPIKTTGRDLDIAVKGDGWIAVQSADGGEAYTRSGSLSFDTTGLLRNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 P++ + PI +P E ++ + G IS + +V+ + L + + Sbjct: 119 N-PIMGDSG-PIVLPLPIEKVSISQDGIISVRPLGSTAEVIEVVGRIKLVNPGN--QNLM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ I + +T++ G +E SN N++ EM +I + ++F ++ E Sbjct: 175 RGEDGLFRLISGDNAPADAFITIESGAVEGSNVNAVSEMVALIDIQRQFEMQVKMMKTAE 234 Query: 232 KSMLEAIRNI 241 + M +A ++ Sbjct: 235 E-MDKASSSL 243 >gi|329888226|ref|ZP_08266824.1| flagellar basal-body rod protein FlgG [Brevundimonas diminuta ATCC 11568] gi|328846782|gb|EGF96344.1| flagellar basal-body rod protein FlgG [Brevundimonas diminuta ATCC 11568] Length = 262 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 104/260 (40%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + A + + +++N++N +TVGF+ + +F +++ + Sbjct: 1 MRALRTAATGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQNVERMGAQSSSQGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q S V +G Y E GS TG D A++G +F + P G TR G F Sbjct: 61 VVPTGIQIGSGVKAGSVYRITEQGSPNRTGNTYDIAIQGKGYFQITLPSGELAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 V +G LV+ G Y V I IPQ ++ + G++ + +V+ + L Sbjct: 121 TVNGEGQLVTDDG-YAVEPA----IAIPQDALDVSISKSGQVQVTTAGQTEPQVVGQLEL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ + P P E G + + + E SN +++ E+ +I Sbjct: 176 ATFFNEAGLEAIGDNLLLETAASGPATVGAPGEVGYG-NLLQHYTEASNVDAVSEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I ++ + Sbjct: 235 VAQRAYEMNSKVITTADEML 254 >gi|254785373|ref|YP_003072802.1| flagellar basal body rod protein FlgF [Teredinibacter turnerae T7901] gi|237683950|gb|ACR11214.1| flagellar basal-body rod protein FlgF [Teredinibacter turnerae T7901] Length = 250 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 13/238 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I ++ + + A+N++N +T GF+ + + + ++ Sbjct: 1 MDKALYIAMSGAKHNMRAQTVHANNLANVNTTGFKADFARARSMPIYFGEGHPTR-AYAL 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G + TG +LD A+EGD + A++SP G TR G + G L + +G Sbjct: 60 EEIPATDFRQGPLVETGRDLDVAVEGDGFIAVQSPDGSEAYTRAGSLFIDALGMLRTGNG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRE 173 PVL PI IP E + G I+ + + V+ ++R Sbjct: 120 -LPVLGNGG-PIAIPA-AEKVEISGDGSITVIALGQGVDAPVQVDRIKLVNPPTDTIQRG 176 Query: 174 NSGISPNIPPTPLE--DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 G+ + E V + GF+E SN N++ E+ ++ L +++ ++ Sbjct: 177 IDGLIHLLDDAQGELPADGNVRIISGFVEGSNVNAVNELTSVMSLARQYEMQVKIMQT 234 >gi|269836598|ref|YP_003318826.1| hypothetical protein Sthe_0566 [Sphaerobacter thermophilus DSM 20745] gi|269785861|gb|ACZ38004.1| protein of unknown function DUF1078 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 247 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 15/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV-----GAIKNDI 52 M S AA +A R T+++N++N T G++ + F E+ G I Sbjct: 1 MIRSMYQAAAAMMAEFSRQLTISENLANVSTPGYKARRTTVQDFREMFLSRFAGGSATPI 60 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 + V + + G+ + TG LD A+ G A+FA+++P + TRDGRF++ D Sbjct: 61 GSISTAVRPEERAIDLSQGALVETGRPLDLAIAGTAFFAVQTPDDVQYTRDGRFQLDADR 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 LV+ G +PVL + PI +P+ D +V G I G + L Sbjct: 121 RLVTGDG-FPVLGLNG-PITLPEGD--IHVTADGTILVNGAPAGQLQLVEFPPDTPIEAV 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + + E V +GF+E SN + M +M+ ++ + ++ ++ Sbjct: 177 GQNRFAIEGAGQQSE---TAGVSQGFVEQSNVDLAQSMVEMLEASRSYALAQRMLQVSDA 233 Query: 233 SMLEAIRNIA 242 ++ A+ I Sbjct: 234 TLGTAVNEIG 243 >gi|153837069|ref|ZP_01989736.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] gi|149749657|gb|EDM60402.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ3810] Length = 261 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTVISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T +LD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQDLDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN------VGEKGEISQKGKVIATMGL 160 + +G +V++ G IQIP F+ V + + + L Sbjct: 121 HINSEGLMVNSQGL-----PLEPQIQIPDNATSFSVGVDGTVTTTTADDPTPQQLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLED-----LSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + P ++ ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLFRETEASGPADELIAGADGAGSIKQGALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|262404539|ref|ZP_06081094.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC586] gi|262349571|gb|EEY98709.1| flagellar basal-body rod protein FlgF [Vibrio sp. RC586] Length = 249 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD ++G+ W ++ G LTR+G ++ + G L++ +G Sbjct: 59 TERPGNNFAQGSVITTGRDLDITVQGEGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +PVL PI +P +G G IS + + V+ + L Q + Sbjct: 119 -HPVLGETGGPITLPVPLAKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRPGN-QALFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E + V V G LE SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRATDPNMQFEADANVKVLTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|110677663|ref|YP_680670.1| flagellar basal body rod protein FlgG [Roseobacter denitrificans OCh 114] gi|109453779|gb|ABG29984.1| flagellar basal-body rod protein FlgG [Roseobacter denitrificans OCh 114] Length = 261 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 108/265 (40%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ T+++N+SN T G+ + +F+++ + Sbjct: 1 MRALKIAATGMSAQQMRVETISNNLSNMSTTGYNARRAEFADLHYQQMSRPGTVNATDGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V + + GS +TG +LD A+EG + + P G TRDG Sbjct: 61 VLPTGVQLGLGVRPSAVSVQLQQGSLSATGGDLDLAIEGTGFLEVTLPSGQTAYTRDGGL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K +G +V++ G YPV I IP ++ GE+ +++ L Sbjct: 121 KRDAEGLIVTSDG-YPVEPE----IVIPDDARSISINTSGEVFAYFSDATDAELLGQFNL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++G + + I TP ED G TV++G+LE S+ +++ E+ ++I Sbjct: 176 AGFTNAKGLEALGGNLFAETEASGAAIVSTPGEDGLG-TVRQGYLESSSVDAVREITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAADQMMGATTQ 259 >gi|251772412|gb|EES52979.1| flagellar basal-body rod protein FlgG [Leptospirillum ferrodiazotrophum] Length = 261 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 97/261 (37%), Gaps = 33/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + + + L + +N++N +T G++ + F +++ + S Sbjct: 1 MFRSLWNAASGMESQQANLDVITNNLANVNTTGYKRQRANFQDLMYQTMVPPGEASSLEG 60 Query: 59 --------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 V G S + GS +T LD A++G+ +F ++ P G TRDG Sbjct: 61 NQVPTGLQVGMGSRLASVQKVFLQGSLRTTNNPLDVAIQGNGFFTVKLPDGRQAYTRDGT 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMG 159 F + G +V+ G I +P+ + +V GE++ + + Sbjct: 121 FNIDSHGRIVTPEGL-----TTDPQIVVPKTAKSIHVAPDGEVTATVAGQSAPVKLGQLV 175 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L G R N+ P + +G ++ GFLE SN N E+ M Sbjct: 176 LAQFINPAGLSSRGNNLFMETSASGKPTLSNPGVNGAG-RLQSGFLEASNVNVAEELVNM 234 Query: 214 IHLTQKFNSITTLIDENEKSM 234 + + + + I + + Sbjct: 235 VIGQRAYQMDASSIRTVNRML 255 >gi|127512280|ref|YP_001093477.1| flagellar basal body rod protein FlgF [Shewanella loihica PV-4] gi|126637575|gb|ABO23218.1| flagellar basal-body rod protein FlgF [Shewanella loihica PV-4] Length = 247 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 107/250 (42%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ ++ + + A + ++ F Sbjct: 1 MDKLLYVAMSGAKQNMNSLAVRANNLANANTDGFKSD-LEQARSMQAFGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++GD W A+++ G TR G G L + G Sbjct: 59 TENPSANFAAGPIKTTGRDLDIAVKGDGWIAVQAVDGGEAYTRSGSLSFDTSGLLRNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ A PI +P E + + G IS + + + + L + + Sbjct: 119 N-PVMGDAG-PIVLPLPIEKVEIAQDGTISVRPLGSTAEVIEEVGRIKLVNPGN--QNLM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V V+ G +E SN N++ EM +I L ++F ++ E Sbjct: 175 RGEDGLFRQLSGVNAPADPNVAVESGAIEGSNVNAVDEMVSLIDLQRQFEMQVKMMKTAE 234 Query: 232 KSMLEAIRNI 241 + M +A ++ Sbjct: 235 E-MDQASSSL 243 >gi|27904804|ref|NP_777930.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372207|sp|Q89AH7|FLGG_BUCBP RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|27904202|gb|AAO27035.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 260 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 98/262 (37%), Gaps = 30/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ +A+N++N +T GF+ K F +++ K S Sbjct: 1 MIPALWIAKTGLDAQQINMNVIANNLANVNTNGFKRSKAIFEDLIYHTVQQPGSKSSEET 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T + D A+ G+ +F ++ P G TRDG F Sbjct: 61 ISPSGFQLGTGVRPITTEREHSQGNLSKTNSLKDVAINGNGFFQVQLPDGNAAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ +G LV+ +G I P +V G I+ + + + L Sbjct: 121 QINPNGQLVTNNGFL-----IQPVINFPANGNNMSVSRDGIITVRIPEQTQPIRVGKLYL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G + P G + + ++E SN N E+ MI Sbjct: 176 ANFVNDSGLSNIGENLYQETEASGNPSISSPGSHGTGLLYQSYVETSNVNIAEELVNMIQ 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + +I ++ + + Sbjct: 236 AQRAYEINSKVITTADQMLQKL 257 >gi|310641552|ref|YP_003946310.1| fagellar hook-basal body protein [Paenibacillus polymyxa SC2] gi|309246502|gb|ADO56069.1| Fagellar hook-basal body protein [Paenibacillus polymyxa SC2] Length = 272 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 102/269 (37%), Gaps = 30/269 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------I 52 M S G++ + +L + +N++N +T GF++ +V F +++ + Sbjct: 1 MLRSMYSGVSGMKGFQTKLDVIGNNIANVNTTGFKSSRVMFKDILSQTSSGASASGEETA 60 Query: 53 DQKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGR 105 + G S + GS ++T D L GD +F ++ LTR G Sbjct: 61 GSNAKQIGLGSTVSSIDTLHLPGSAMTTNNPTDLRLNGDGFFLVKMNADQEAPYLTRAGD 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGL 160 F + + LV++ G + VPI + F++ + G I S + +G+ Sbjct: 121 FHIDGNRHLVTSDGFFVADSGGGVPITLADDVTAFSISQDGTIVQTLASGETDNATKIGV 180 Query: 161 YSVDMSQGFVRRENSGISPNIP----------PTPLEDLSGVTVKRGFLEDSNANSMYEM 210 V +G + S + D + G LE SN + E Sbjct: 181 TKVINPEGLEKIGGSLYRATVNSGNEGEITAMEANSADDGTGAIISGQLEMSNVDLTGEF 240 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + F + + +I +++ + E + Sbjct: 241 TEMIVAQRGFQANSRIITTSDEVLQEVVN 269 >gi|58039418|ref|YP_191382.1| flagellar basal-body rod protein FlgF [Gluconobacter oxydans 621H] gi|58001832|gb|AAW60726.1| Flagellar basal-body rod protein FlgF [Gluconobacter oxydans 621H] Length = 246 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 8/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M+ S I L+ A ++ +S VA NMSN TVG++ V FS+ + G+ + + Sbjct: 1 MENSTYIALSRMDAQQRAMSVVAANMSNASTVGYKRENVLFSDFLSHQHGSKQPEGADTE 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S+ Y + G STG LD AL G+ +F + + G+ LTR GRF+ DG++V Sbjct: 61 SYTQDRATYRDFQQGDMQSTGNPLDLALGGEGYFQVRTANGVRLTRAGRFEEQQDGAIVD 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 +G +LD PI++PQ D + G IS + +G+ + + + Sbjct: 121 ENGN-ALLDRDGQPIELPQTDHRITISADGVISTETGEQGQIGIVTAQDNNRLQAEGSRL 179 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + + P T +E + + +G +E SN M E+ QM+ + + F+ + +D Sbjct: 180 LRSDQPTTAVERPN---IVQGMVEGSNVQMMTEVTQMMEIQRNFDFMAQFVDAEATRQKN 236 Query: 237 AIRNI 241 AI I Sbjct: 237 AIDKI 241 >gi|157376215|ref|YP_001474815.1| flagellar basal body rod protein FlgF [Shewanella sediminis HAW-EB3] gi|157318589|gb|ABV37687.1| flagellar basal-body rod protein FlgF [Shewanella sediminis HAW-EB3] Length = 247 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 106/250 (42%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKLLYVAMSGAKQNMNSLAVRANNLANANTDGFKSDMAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++GD W A+++ G TR G G L + G Sbjct: 59 TESPSANFASGPIKTTGRDLDVAVKGDGWIAVQAGDGGEAYTRSGSLSFDTTGLLRNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ + PI +P E + + G IS + + + + L + + Sbjct: 119 N-PVMGDSG-PIVLPLPIEKIEIAQDGIISVRPQGATAEVIEEVGRIKLVNPGN--QNMM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R + G+ + V V+ G +E SN N++ EM +I + ++F ++ E Sbjct: 175 RGSDGLFRLMSGENAPADPFVGVESGAVEGSNVNAVDEMVNLIDIQRQFEMQVKMMKTAE 234 Query: 232 KSMLEAIRNI 241 + M +A ++ Sbjct: 235 E-MDKASSSL 243 >gi|289208115|ref|YP_003460181.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. K90mix] gi|288943746|gb|ADC71445.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. K90mix] Length = 246 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 13/248 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ S N++N +T GFR + V ++ + + Sbjct: 1 MDRFLYIAMSGAKETMHAQSVNNHNLANANTDGFRQALANANTV--PVRGPVFDSRDYAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 G + G STG +LD A+E + A++ P G TR G V G L +A G Sbjct: 59 LGTDGTDFSKGQMQSTGRDLDIAIEDQGFIAVQGPDGEEGYTRAGSLHVDAFGLLRTAQG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS------VDMSQGFVRRE 173 + VL PI IP E +G G IS + + + L + V+ + R Sbjct: 119 -HQVLGDGG-PIAIPP-SEKIEIGTDGTISVRPQGVGPEALAAIERIRLVNPDVNELERG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + G+ + V V G LE SN N++ + +MI L++ F ++D + Sbjct: 176 DDGLFRMADGGEAPPDAEVRVVSGMLEGSNVNTVEALTRMIELSRHFEMQVKMMDSAN-T 234 Query: 234 MLEAIRNI 241 + ++ + Sbjct: 235 LEQSSNRL 242 >gi|254461663|ref|ZP_05075079.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium HTCC2083] gi|206678252|gb|EDZ42739.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium HTCC2083] Length = 262 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 112/264 (42%), Gaps = 30/264 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS----- 57 + ++ A + R+ +A+N+SN +TVGF++ +V F ++ +K + S Sbjct: 4 NAMHVAKTGLNAQQTRMQVIANNLSNLNTVGFKSDRVNFESLLYQVKRGGGDQTSEGTEL 63 Query: 58 ----FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 + +G ++ + G ++T D A++G +F + P G + TR+G F Sbjct: 64 TSALALGTGVRAVNTQKLYSQGGMVNTDNSFDLAIDGQGFFQVLIPDGRVGYTRNGSFSR 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYS 162 + +G+L +ASG Y V I+IP NV + G +S + + + + L S Sbjct: 124 SAEGALTTASG-YVVQPE----IRIPDDVVEVNVSQDGIVSVRSAAQKEPQEVGQLTLAS 178 Query: 163 VDMSQGFVRRENS-GISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLT 217 +G S + P + +G LE SN N + ++ +MI Sbjct: 179 FANPRGLQPVGESFLVQTAASGDPTVASPQAQGIGKLVQGSLESSNVNVVQQLVEMIETQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + + + I +++ M N+ Sbjct: 239 RAYEVSSKSITASDEMMRYISNNL 262 >gi|116626490|ref|YP_828646.1| flagellar basal-body rod protein FlgG [Candidatus Solibacter usitatus Ellin6076] gi|116229652|gb|ABJ88361.1| flagellar basal-body rod protein FlgG [Candidatus Solibacter usitatus Ellin6076] Length = 263 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 94/267 (35%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + +A N++N +T G++ + +F +++ Sbjct: 1 MIRALYSAASGMTAQQLNVDNIAHNLANANTAGYKMRRAQFQDLIYQTVVQPGSASGQQT 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + L GSF T LD ++G +F + P G TR G F Sbjct: 61 TVPTGLQVGLGTRTSSNEILFTQGSFAQTDNPLDLVIQGKGFFQVRQPSGQLAYTRSGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 DG++V+ G I +P + ++ + G +S + + L Sbjct: 121 HCDRDGNIVTQDGN-----TLEPQITVPAAAQQISIAQDGTVSYTLPNQSAAQQAGQIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + P TP +V +G+ E SN + + E +I Sbjct: 176 ANFQNPAGLNSVGGNLYLPTDASGDATVGTPGGQEGLGSVLQGYTEQSNVSVVEEFINLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + + ++ + M + + N+ Sbjct: 236 VAQRGYEANSKVVKAADD-MYQQVNNL 261 >gi|71282391|ref|YP_268224.1| flagellar basal body rod protein FlgG [Colwellia psychrerythraea 34H] gi|71148131|gb|AAZ28604.1| flagellar basal-body rod protein FlgG [Colwellia psychrerythraea 34H] Length = 262 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 113/265 (42%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ +++N++N T+GF+ + F +++ N + + Sbjct: 1 MNAALWISKTGLDAQTKDIAVISNNLANASTIGFKKSRAVFEDLLYQNINQPGGRTAQDT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + ++ + G I++ LD ++G+ +F ++ P G +R+G+F Sbjct: 61 EAPSGLMLGAGTKVVATQKIHTQGDMITSDNALDLMIQGEGFFEIQMPDGSSAYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D+G++V+ Y + + IP+ V + GE+S V+ + L Sbjct: 121 TMDDEGNMVTPGAGYMIQPQ----VTIPEDALSIIVSQDGEVSVTLQGQPDPAVVGQINL 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G + + + P E + G+ + +G LE SN N+ E+ +I Sbjct: 177 INFVNPTGLQPIGQNLYTETAVSGAPQEGVPGLEGYGMLVQGALETSNVNTTEELVNLIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I ++ ML I Sbjct: 237 SQRVYEMNSKVISAVDE-MLSYINQ 260 >gi|296531727|ref|ZP_06894555.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] gi|296267943|gb|EFH13742.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] Length = 260 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 31/265 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + NI A + + +A N++N T F K +F +++ + S Sbjct: 1 MRAMNIAATGMQAQQTNVEVIAHNIANVSTTAFTRRKAEFQDLLYQSGERVGSASSEAGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G+ TG D ALEG +F ++ P G TRDG F Sbjct: 61 LLPVGTQVGLGVRNSAINRITVQGTLNETGNRYDLALEGRGYFGIDLPDGTVAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKV--IATMGLY 161 K++ +G +V+ G YP+ +VPI V + GE+ G+ + L+ Sbjct: 121 KLSQEGQIVTTEG-YPIQPAINVPI----DARDVTVNQAGEVLVTQANGQQQNAGRLNLF 175 Query: 162 SVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHL 216 G + + P + L V++G+LE SN N + E+ Q+I Sbjct: 176 LFPNEAGLEAIGGNKFLETEASGQPNQGLPSDPGYARVRQGYLEASNVNVVQEITQLIAA 235 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I+ ++ ML+ N+ Sbjct: 236 QRAYEMNSKVIEATDQ-MLQTANNV 259 >gi|254182892|ref|ZP_04889485.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] gi|254299684|ref|ZP_04967133.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|157809479|gb|EDO86649.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 406e] gi|184213426|gb|EDU10469.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 1655] Length = 262 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +L VA+N++N +TVGF+ +V F ++ ++ Sbjct: 1 MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q S GS +TG LD A+ G + + G TR G+ Sbjct: 61 ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G LV+A G P+ I IP+ +GE G ++ + + L Sbjct: 121 SINAEGLLVNAQG-LPLQPE----ISIPENATDIAIGENGIVAATMPGASSPSEVGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + ++ P P D+ G +K+G LE SN + EM MI Sbjct: 176 ANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + T ++ + + + Sbjct: 235 AAQRTYEMNTKVLSAADNMLQQL 257 >gi|115353117|ref|YP_774956.1| flagellar basal body rod protein FlgF [Burkholderia ambifaria AMMD] gi|170703097|ref|ZP_02893917.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria IOP40-10] gi|115283105|gb|ABI88622.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria AMMD] gi|170131994|gb|EDT00502.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria IOP40-10] Length = 252 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M + + + VA+N++N T GFR + V +D Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSTSDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W A+++ G TR G V ++G LV Sbjct: 61 TYVLASTPGADYAPGPITRTGNPLDVAVQGAGWLAVQTADGSEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVIGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LARGNDGLFRTADGNPADSDPSVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|119899026|ref|YP_934239.1| flagellar basal-body rod protein FlgF [Azoarcus sp. BH72] gi|119671439|emb|CAL95352.1| flagellar basal-body rod protein FlgF [Azoarcus sp. BH72] Length = 245 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 9/246 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + V+ N++N + GFRT K V ++ + +F Sbjct: 1 MDRLIYTAMTGAKGTLDQQAAVSHNLANATSTGFRTEMHKLRAV--EVQTEAMHTRAFTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G TG D A+EG W ++ P G TRDG +++ +G L + SG Sbjct: 59 DASVATDYSAGPLQFTGRPYDVAVEGKGWLTVQMPDGTEAYTRDGSLELSANGVLQTRSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM--GLYSVDMSQGFVRRENS 175 PVL + PI +P EI +G G IS Q G+ + + L V+ + + R + Sbjct: 119 -LPVLGASGAPIALPPDTEIV-IGADGTISSLQAGQNVVNVVDQLKLVNPPEATLVRGDD 176 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 G+ V V G+LE SN N + +M MI L ++F T ++ E++ Sbjct: 177 GLFRTGDGAAQAADPAVKVAGGYLEGSNVNVVDQMVTMISLARQFEMQTRMLQTAEQNDR 236 Query: 236 EAIRNI 241 A + + Sbjct: 237 AAAQVL 242 >gi|94312670|ref|YP_585879.1| flagellar basal body proximal rod protein [Cupriavidus metallidurans CH34] gi|93356522|gb|ABF10610.1| flagellar basal body proximal rod protein [Cupriavidus metallidurans CH34] Length = 247 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 13/245 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ + + + V++N++N T F+ + V + Q +F Sbjct: 1 MDRMIYTALSGAKQILDQQAAVSNNLANASTTAFKAQVNMYRAV--PVVGQETQTRAFTL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G TG LD AL+G+ W A++ P G TR G +V+ DG L ++ G Sbjct: 59 ASTPGADMKAGPLSYTGRNLDVALQGNGWLAVQMPDGSEAYTRAGSLQVSPDGQLQTSLG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV-------DMSQGFVRR 172 PV+ PI IP ++G G ++ +G A GL V +G R Sbjct: 119 -LPVMGDGG-PIGIPPG-STVSIGTDGTVTARGPGEAANGLAQVGKLRVVTPPPEGLARG 175 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ++ PL+ V V G LE SN N + M +MI ++F +I + Sbjct: 176 DDGYFRLRPGVDPLQQDPNVRVISGALEGSNVNPVESMVEMIANARRFEMQMKMITGADS 235 Query: 233 SMLEA 237 + A Sbjct: 236 NDQRA 240 >gi|315929129|gb|EFV08356.1| flagellar basal-body rod protein FlgG [Campylobacter jejuni subsp. jejuni 305] Length = 250 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 110/255 (43%), Gaps = 31/255 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF--- 58 S + +A + ++ ++N++N +T GF+ + +F++++ + S Sbjct: 1 MRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADLMYQVMKYAGTSTSATTL 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTE-LDFALEGDAWFALESPRGII-LTRDGRF 106 V G + G+ ST T+ LD A+ G+ +F ++ P G I TR+G+F Sbjct: 61 SPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNGFFQIQLPDGTIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++G++V++ G Y +L + IP+ NV G +S Q+ I + L Sbjct: 121 TKDNEGNIVNSDG-YRLLPE----MTIPEGATAINVATDGTVSVMLPGEQQETQIGQVEL 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G ++ + P+ ++G T++ GF+E SN + EM +I Sbjct: 176 VQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHGFIELSNVQLVEEMTDLIT 235 Query: 216 LTQKFNSITTLIDEN 230 + + + + I + Sbjct: 236 GQRAYEAGSKAITTS 250 >gi|23092317|gb|AAN08642.1| FlgG [Aeromonas hydrophila] Length = 262 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I A + ++ ++N++N TVGF+ + + +++ N + S Sbjct: 1 MNPALWISKTGLDAQQTNIAVTSNNLANASTVGFKKSRAIYEDLLYQNINQPGGRSSADT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + ++ + G+ +T LD + G +F ++ P G TR+G+F Sbjct: 61 ELPSGLMLGAGAKVVATQKNHSQGNVQTTDNSLDLMISGRGYFEIQLPDGSAAYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + D+G++V+ YP+ IQIP+ + VGE G++S + +V+ + Sbjct: 121 TLNDEGTIVTPGNGYPLQPE----IQIPENAQSVTVGEDGQVSVQLKGDGASQVVGQINT 176 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E I T D GV +K+G LE SN N E+ +I Sbjct: 177 SDFVNASGLQPMGENMFVETQSSGAPIQGTAGADGLGV-IKQGMLETSNVNVTEELVNLI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + ++ + M I+ Sbjct: 236 QAHRVYEMNSNVLSAVDGMMSFLIQR 261 >gi|254477684|ref|ZP_05091070.1| flagellar basal-body rod protein FlgG [Ruegeria sp. R11] gi|214031927|gb|EEB72762.1| flagellar basal-body rod protein FlgG [Ruegeria sp. R11] Length = 261 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 108/265 (40%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ T+++N++N +T G+ + +F+++ Sbjct: 1 MRALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + + G+ TG +LD A++G + + P G TRDG Sbjct: 61 VLPTGVQVGLGVRASAISIHLAQGALTQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G S I IP ++ GE+ + +G+++ + L Sbjct: 121 KRSAEGLIVTSDGF-----TVSPDITIPADARNVSINADGEVYAYFDETAEGQLMGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E +P E+ G T+++G+LE S+ +++ E+ ++I Sbjct: 176 AGFSNPKGLEALGSNLFVETEASGAATVASPGENGLG-TLRQGYLEASSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAVDQMMGATTQ 259 >gi|254445900|ref|ZP_05059376.1| flagellar basal-body rod protein FlgG [Verrucomicrobiae bacterium DG1235] gi|198260208|gb|EDY84516.1| flagellar basal-body rod protein FlgG [Verrucomicrobiae bacterium DG1235] Length = 260 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 106/262 (40%), Gaps = 28/262 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + A + L+ +++N++N T GF+ KV+F ++ + + Sbjct: 1 MSISLYSAASGMEAQQTNLNVISNNIANVSTTGFKKSKVEFQDMFYQVPKSVGADSGGNI 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 V +G + +S G TG +LD A+ GD +F + P + TRDG FK Sbjct: 61 LPTGIQVGTGTQVVSTSKVFTQGQVSQTGEQLDVAIVGDGFFRVTGPDNETLYTRDGAFK 120 Query: 108 VTDDGSLVSASG----KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 V G + ++ G + + + I + + + ++ +G+ + Sbjct: 121 VGPTGEVTNSQGMTAIDFAAPPAGTTKVVINDTGGVTYLADDSDVLGRGQ----LQTARF 176 Query: 164 DMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 S G + RE P D SG T+++G+LE SN N + EM MI Sbjct: 177 RNSSGLLALGGNLFRETDASGAPTVGNPGADGSG-TLQQGYLETSNVNIVEEMVNMILAQ 235 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + + + I ++ M + + Sbjct: 236 RAYEINSKSIQTSDSMMQQVAQ 257 >gi|134280724|ref|ZP_01767434.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] gi|167725932|ref|ZP_02409168.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei DM98] gi|125657220|gb|ABN48708.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei] gi|134247746|gb|EBA47830.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 305] Length = 262 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +L VA+N++N +TVGF+ +V F ++ ++ Sbjct: 1 MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q S GS +TG LD A+ G + + G TR G+ Sbjct: 61 ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G LV+A G P+ I IP+ +GE G ++ + + L Sbjct: 121 SINAEGLLVNAQG-LPLQPE----ISIPENAADIAIGENGIVAATMPGASSPSEVGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + ++ P P D+ G +K+G LE SN + EM MI Sbjct: 176 ANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + T ++ + + + Sbjct: 235 AAQRTYEMNTKVLSAADNMLQQL 257 >gi|84502379|ref|ZP_01000515.1| flagellar basal body rod protein FlgG [Oceanicola batsensis HTCC2597] gi|84389191|gb|EAQ01988.1| flagellar basal body rod protein FlgG [Oceanicola batsensis HTCC2597] Length = 261 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 99/262 (37%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I +A + + +++N++N T GF++ + F +++ S Sbjct: 1 MKALGIAATGMMAQQTNVDVISNNIANASTTGFKSARASFQDLLYENIEREGAPTSDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G T + D A+EG +F + P G TRDG Sbjct: 61 YLPVGIDVGLGVRTAGTVRLNTQGGLTQTENQTDLAIEGRGYFVVNMPDGNAAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ +G +V+ G + I +PQ +GE G +S I + L Sbjct: 121 RLNAEGQIVTQQGY-----EVNPGIVVPQDTTRVEIGETGIVSAYVGNDAIPVEIGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G N+ ++ + P + G +++G+LE SN N + ++ +I Sbjct: 176 ATFINDAGMRPLGNNLLAATVASGDPTQANPGDPAVGILRQGYLETSNVNIIQQITDLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + I+ ++ M A Sbjct: 236 AQRAYEMNSKSIETADQMMSTA 257 >gi|71281915|ref|YP_268223.1| flagellar basal-body rod protein FlgF [Colwellia psychrerythraea 34H] gi|71147655|gb|AAZ28128.1| flagellar basal-body rod protein FlgF [Colwellia psychrerythraea 34H] Length = 247 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 15/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ Q LS A+N++N T GF+ + + A + ++ F Sbjct: 1 MDKLLYIAMSGAKQNMQALSINANNLANAKTTGFKADLAQARSM-QAFGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + + GS + TG LD A+EG+ +FA+++ G TR G F++T+ G+L + G Sbjct: 59 TERASQNFDSGSILHTGRSLDMAIEGEGFFAVQAEDGQEAYTRGGHFRLTETGALETNDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATMGLYSVDMSQGFVR 171 + + + PI +P + G I S + + + L + D V Sbjct: 119 ELVIGENG--PITLPLPINNIQISRDGTIMVQPAGAPSSVQEEVGRIKLVNPD--TRLVD 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + N G+ L V V G LE SN N + EM MI L ++F ++ E Sbjct: 175 KGNDGLFRAKNGGQLIADVNVNVLGGALESSNVNPINEMTDMIALQRQFEMQLKMMKTAE 234 Query: 232 KSMLEA 237 + A Sbjct: 235 EIDSSA 240 >gi|91792665|ref|YP_562316.1| flagellar basal body rod protein FlgF [Shewanella denitrificans OS217] gi|91714667|gb|ABE54593.1| Flagellar basal-body rod FlgF [Shewanella denitrificans OS217] Length = 247 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKFLYVAMSGAKQNMSALAVRANNLANANTDGFKSDLTQARSM-QAFGEGLPSRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ +TG +LD A++GD W A+++P G TR G K + G L+++ Sbjct: 59 TEIATSDFKAGALKTTGRDLDIAVKGDGWIAVQAPDGSEAYTRSGGLKFDNTGLLLNSR- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ + PI +P + + G IS + + +A + L + D SQ + Sbjct: 118 NNPVMGNSG-PIVLPLPIDKLQISPDGIISIRPQGATAEVIEEVARIKLVNPDNSQ--MM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ V V+ G +E SN N + EM +I + +++ ++ E Sbjct: 175 RGEDGLFRLTSGDVAAKDPSVQVESGAIEASNVNPVEEMVALISIQRQYEMQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 ET 236 >gi|58039417|ref|YP_191381.1| flagellar basal body rod protein FlgG [Gluconobacter oxydans 621H] gi|58001831|gb|AAW60725.1| Flagellar basal-body rod protein FlgG [Gluconobacter oxydans 621H] Length = 263 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 109/267 (40%), Gaps = 32/267 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + +I A + + T+++N++N T G++ + +F +++ + S Sbjct: 1 MRALDIAGTGMQAQQTNVETISNNIANMSTTGYKRSRAEFQDLIYQNIRRVGASSSDTGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + Y + GS T LD A++G +F ++ P G TRDG F Sbjct: 61 TIPAGAQVGLGVKTAAIYRINDQGSLEQTSNSLDLAVQGRGYFQVQLPSGQLAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + ++GSLV+A G S I IP + +V + G++S ++ + L Sbjct: 121 SMDNNGSLVTADGYL-----ISPTITIPNNAQSISVDQSGQVSVQIAGQNNTTLVGQLQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + + E + ++ +G++E+SN N + E+ +I Sbjct: 176 GIFTNENGLAAMGQNLFTQTTASGDAMMGNPEAVGYGSIMQGYVENSNVNVVTEITDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + +I ++ M + + N+ Sbjct: 236 AQRAYEMNSKVITASDDMM-KTVTNLG 261 >gi|259417939|ref|ZP_05741858.1| flagellar basal-body rod protein FlgG [Silicibacter sp. TrichCH4B] gi|259346845|gb|EEW58659.1| flagellar basal-body rod protein FlgG [Silicibacter sp. TrichCH4B] Length = 261 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 116/265 (43%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ----KIS 57 + I A + R+ T+++N++N +T + + +F+++ + + Sbjct: 1 MRALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGT 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + + G+ TG ELD A++G+ +F + P G TRDG F Sbjct: 61 VLPTGVQVGLGVRPAAVSVYLNQGALSQTGNELDVAIDGNGYFEVTLPSGETAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V+ G YPV S I IP+ ++ +GE+ + + +++ + L Sbjct: 121 KRSAEGLIVTNDG-YPV----SPEITIPEDANSISINAEGEVYAYFNDTVEAELLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + ++ P D G T+++ +LEDS+ +++ E+ ++I Sbjct: 176 SGFTNPKGLEAVGSNLFKQTEASGQPNTTEPGADGVG-TLRQKYLEDSSVDAVREITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ M + Sbjct: 235 EAQRGYEMNSKVISAVDQMMSATTQ 259 >gi|315125986|ref|YP_004067989.1| flagellar basal-body rod FlgG [Pseudoalteromonas sp. SM9913] gi|315014500|gb|ADT67838.1| flagellar basal-body rod FlgG [Pseudoalteromonas sp. SM9913] Length = 261 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 113/266 (42%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + R++T+++N++N T GF+ + F ++ ++ ++ Sbjct: 1 MNSALWVSKTGLAAQDLRMTTISNNLANVSTAGFKKDRAVFEDLFYQVQKQPGAQVDELN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V GSF +T +LD A+ G +F +ESP G + TR+G+F Sbjct: 61 QLPSGIQVGTGVRINGTQKQFTEGSFETTSNQLDVAIAGQGFFQIESPDGELLFTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 ++ + LV+++G + I +P+ ++G G ++ + + M Sbjct: 121 QLNSESLLVNSNGL-----PLAQNIALPEGTTKVSIGTDGTVTAVVGKDAQAVELGQMLT 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + + P ED G +++ +E SN + + EM MI Sbjct: 176 VNFANPAGLQSLGGNLYRETAASGEPVEGIPGEDAFG-GLQQFTIEGSNVSVVDEMVSMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + ++ ++ ML I Sbjct: 235 AVQRAYEMNAKVVSAADE-MLRFINQ 259 >gi|126444737|ref|YP_001061248.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei 668] gi|126224228|gb|ABN87733.1| flagellar basal-body rod protein FlgG [Burkholderia pseudomallei 668] Length = 262 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +L VA+N++N +TVGF+ +V F ++ ++ Sbjct: 1 MNQAMWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S GS +TG LD A+ G + + G TR G+ Sbjct: 61 ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGDTGYTRAGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G LV+A G P+ I IP+ +GE G ++ + + L Sbjct: 121 SINAEGLLVNAQG-LPLQPE----ISIPENATDIAIGENGIVAATMPGASSPSEVGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + ++ P P D+ G +K+G LE SN + EM MI Sbjct: 176 ANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + T ++ + + + Sbjct: 235 AAQRTYEMNTKVLSAADNMLQQL 257 >gi|328545505|ref|YP_004305614.1| flagellar basal-body rod protein FlgG [polymorphum gilvum SL003B-26A1] gi|326415246|gb|ADZ72309.1| Flagellar basal-body rod protein FlgG [Polymorphum gilvum SL003B-26A1] Length = 262 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 94/259 (36%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + I A + + +A+N++N +T ++ + +FS+++ + Sbjct: 1 MKALAIAATGMSAQQLNVEVIANNIANMNTTAYKRARAEFSDLLYQAERLQGVPNRGGED 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + Q V + G+ +T +LD A++G WF + P G + TR G F Sbjct: 61 PVPEGAQLGLGVKTAAIRKLHMQGTLTNTDNKLDLAIDGRGWFQVTGPEGETLYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +G LV+ G I P + E G++ + + + L Sbjct: 121 NKNAEGRLVTLDGY-----GIEPAILFPPDTVDIIINESGQVFAQVAGELNPRELGQLAL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + GV +++G+ E SN + + E+ ++I Sbjct: 176 TNFANDVGLEPVGGNLFRETPASGIGLDGVAGDPGFGV-IRQGYQEASNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + + + +I + Sbjct: 235 SAQRGYEMNSKVIQAADDM 253 >gi|125975103|ref|YP_001039013.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|125715328|gb|ABN53820.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] Length = 259 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 106/262 (40%), Gaps = 26/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M + LA +++ V++N++N +T F+ + F +++ ND + Sbjct: 1 MIRGLYTSGWSMLANSKQMDVVSNNLANVNTTAFKKDTLILESFPDMLVRRINDSRSASN 60 Query: 58 FVA----------SGKEYLSKEVGSFISTGTELDFALE--GDAWFALESPRG-----IIL 100 G+ + G T LD A+ A+F + P G Sbjct: 61 PSGRLGNVQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNEEYTEYY 120 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 TRDG F + G LV+ G Y V+ I E F+V + G I Q G+ +A + + Sbjct: 121 TRDGSFALNAYGQLVTKEG-YLVMGQNG---VITLNSENFSVSDDGTIIQDGEAVARLLI 176 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + ++ + E V++G+LE SN NS+ EM MI + + + Sbjct: 177 RNFTDTTTLRKVGSNLVQRTENTQ--EQPFDGVVRQGYLEQSNVNSINEMINMITIMRSY 234 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 + ++ + ++ +A+ I Sbjct: 235 EANQKILQAQDGTLEKAVNEIG 256 >gi|323498419|ref|ZP_08103415.1| flagellar basal body rod protein FlgF [Vibrio sinaloensis DSM 21326] gi|323316492|gb|EGA69507.1| flagellar basal body rod protein FlgF [Vibrio sinaloensis DSM 21326] Length = 249 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 13/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + + GS I+TG +LD +EG+ W A+ G LTR+G KV +G LVS +G Sbjct: 59 TERPGHNFQQGSVITTGRDLDVTIEGNGWIAVLDKSGKEGLTRNGNLKVDVNGLLVSGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 V+ PI +P +G G IS + V+ + L + +Q + Sbjct: 119 NL-VIGETGGPITLPIPLSKVEIGTDGTISVVPQGAPADAIEVVDRIKLTN-TNNQSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E + V + G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRAKDPNAAYEADADVKLLTGAIEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KS 233 + Sbjct: 237 EM 238 >gi|59712480|ref|YP_205256.1| flagellar basal body rod protein FlgF [Vibrio fischeri ES114] gi|24459278|gb|AAL86631.1| FlgF [Vibrio fischeri ES114] gi|59480581|gb|AAW86368.1| flagellar proximal rod protein FlgF [Vibrio fischeri ES114] Length = 249 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + ++N++N T GFR ++ + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRSNNLANVSTTGFRAD-LEQARSMQAYGEGLPTRV-FNM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + S GS I+TG +LD +EGD W ++ G LTR G K+ + G L++ SG Sbjct: 59 TERPGSSFSQGSVITTGRDLDLTVEGDGWISVMDNTGREGLTRAGNLKIDETGLLMNGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P + + G IS + + + L D + + Sbjct: 119 -HVVLGENDAPITLPLPIAKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKTDN-RDLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P + + +T+ G LE SN N++ EM +I L ++F ++ E Sbjct: 177 DTNGLFRSKNPGATFDADANITLLSGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAE 236 Query: 232 KSMLEA 237 + M +A Sbjct: 237 E-MDKA 241 >gi|224370760|ref|YP_002604924.1| flagellar basal body rod protein FlgG [Desulfobacterium autotrophicum HRM2] gi|223693477|gb|ACN16760.1| FlgG2 [Desulfobacterium autotrophicum HRM2] Length = 260 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M + A + + VA+N++N+ T GF+ + F +++ GA Sbjct: 1 MIRALWTSATGMNAQQIQTDVVANNLANSSTAGFKKSRANFQDLMYQTMLVAGATTPGGG 60 Query: 54 QKISFVASGKEYL------SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 Q + + G G + TG ELDF ++GD +F + + TR G F Sbjct: 61 QIPTGIQVGMGVRPSGVQKIFTQGDYSQTGNELDFVIQGDGFFRVLHGDEELYTRAGNFT 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYS 162 + +G + + SG D I IP + + ++ + G ++ G + L S Sbjct: 121 LDSEGFITTNSG-----DRLQPEISIPVEATLISLQDNGTLTVTGADDTILATEQVNLSS 175 Query: 163 VDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G + R+ G P P + G TV FLE SN + + EM MI Sbjct: 176 FVNPAGLFAVGENLFRQTEGSGPATEGIPGDAPLG-TVANNFLEMSNVSVVEEMVNMIVG 234 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + + I + +ML + Sbjct: 235 QRAYEANSKSIQTAD-TMLGLANGL 258 >gi|288553056|ref|YP_003424991.1| flagellar basal body rod protein FlgG [Bacillus pseudofirmus OF4] gi|288544216|gb|ADC48099.1| flagellar basal body rod protein FlgG [Bacillus pseudofirmus OF4] Length = 279 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 29/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N+SN +T GF+ + FS++V + Sbjct: 11 MLRSMYSGISGMRNFQTKLDVIGNNISNVNTAGFKKGRTTFSDMVSQQIAGASGPVVNGR 70 Query: 61 SGKEY-------------LSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDG 104 G GS +T LD + G+ +F L E+ +R G Sbjct: 71 GGTNPRQVGLGSQLATIDTIHTQGSLQNTNRSLDLGISGNGYFRLSDSETGGTTYYSRAG 130 Query: 105 RFKVTDDGSLVSASGKYPVLDMA-SVPIQIPQKDEIFNVGEKGEISQ---KGKVI--ATM 158 F + +DG +V+A+G Y + D IQI + F++G+ G ++ G++ T+ Sbjct: 131 NFYLDEDGYIVNANGLYLLDDSDPGSRIQIAPDSQSFSIGQAGVVNVIDSAGQLTSPGTI 190 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 L +G + ++ TP D +G V G LE SN + E + Sbjct: 191 SLAYFSNPEGLQKEGDNLYQVTDNSGAAQRTTPTNDGTGALVA-GTLEMSNVDLSEEFTE 249 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 MI + F + T +I +++ + E + Sbjct: 250 MIVAQRGFQANTRIITTSDEILQELVN 276 >gi|172061971|ref|YP_001809623.1| flagellar basal body rod protein FlgF [Burkholderia ambifaria MC40-6] gi|171994488|gb|ACB65407.1| flagellar basal-body rod protein FlgF [Burkholderia ambifaria MC40-6] Length = 252 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M + + + VA+N++N T GFR + V +D Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSTSDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W A+++ G TR G V ++G LV Sbjct: 61 TYVLASTPGADYAAGPITRTGNPLDVAVQGAGWLAVQTADGSEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVIGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LSRGNDGLFRTADGNPADSDPSVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|294508678|ref|YP_003572737.1| flagellar basal-body rod protein [Salinibacter ruber M8] gi|294345007|emb|CBH25785.1| flagellar basal-body rod protein [Salinibacter ruber M8] Length = 260 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 102/245 (41%), Gaps = 9/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F AA + + VA+N++N T G++ +V F+E + IS Sbjct: 20 MLPRFQNAAAAMSEMRLQQEQVANNLANASTTGYKKDRV-FTEALNERLTKDGSPISDRR 78 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSAS 118 ++ GS TG LD AL + +F + G TR G F V G+L + Sbjct: 79 L-EQANDLSGGSLKETGNPLDVALGDEGFFVTQPRGGGAERYTRAGHFVVGSQGTLRTPE 137 Query: 119 GKYPVLDMASVPIQIP-QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G+ V+ PIQ+P ++ ++ + G I+ + + + + + + + R + Sbjct: 138 GR-EVMGEGG-PIQLPVEQGGDISISKSGRITAGQQRVGALRVATFENPEQLERTSGASF 195 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + + V +G +E SN + + E+ MI + ++F + I + + A Sbjct: 196 AAGD--AQPQAAENPVVLQGKVETSNVDPVTELTNMIEIQRQFEAQQKTIQTTDGVLGRA 253 Query: 238 IRNIA 242 +++ Sbjct: 254 TQSLG 258 >gi|254698165|ref|ZP_05159993.1| flagellar basal body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] Length = 246 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 33/251 (13%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQKI----SFVASGKEYLS 67 L +A+N++N +T GF+ + +F++++ + N +Q I + V G + + Sbjct: 1 NLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALVGLGVQTAA 60 Query: 68 KE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 GSF TG D AL G WF ++SP G + TR G F DG LV+ G P Sbjct: 61 VRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQLVTLDGN-P 119 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQGF------V 170 V I IP + + G++ K + + + L + G + Sbjct: 120 VEPA----ITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGLEPLGGNL 175 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 RE + P + G ++K+G+LE SN + + E+ +I + + + +I Sbjct: 176 YRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITAQRAYEMNSKVIQAA 234 Query: 231 EKSMLEAIRNI 241 ++ +N+ Sbjct: 235 DEMAATVSKNL 245 >gi|91776310|ref|YP_546066.1| flagellar basal-body rod FlgF [Methylobacillus flagellatus KT] gi|91710297|gb|ABE50225.1| Flagellar basal-body rod FlgF [Methylobacillus flagellatus KT] Length = 246 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 12/244 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ ST A+N++N T GFR F V + +D +FV Sbjct: 1 MDRLIYTAMTGLKHIMEQQSTTANNLANATTTGFRAQIDSFRAV--PVLSDGLPTRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G +TG ELD A+ WFA++ P G TR+G FK+ ++G L + G Sbjct: 59 DATVGTNFNSGVINTTGRELDLAIRDQGWFAVQRPDGTEAYTRNGNFKLNENGVLQTQDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM------GLYSVDMSQGFVRRE 173 + D PI IP + + G +S + + L V+ + R Sbjct: 119 MMVLGDNG--PITIPLEAK-VAFANDGMVSAVATNVVPLFTNMIGRLKLVNPGDDNLVRG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ P+ + VT+ G LE SN N + EM MI ++F+ T LI E + Sbjct: 176 PDGLFETRNREPVPASANVTIVSGALEGSNVNVVEEMVNMISQARQFDLQTKLIQNAENN 235 Query: 234 MLEA 237 +A Sbjct: 236 ATKA 239 >gi|34497161|ref|NP_901376.1| flagellar basal body rod protein FlgG [Chromobacterium violaceum ATCC 12472] gi|34103018|gb|AAQ59381.1| flagellar basal-body rod protein flgG [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 107/266 (40%), Gaps = 30/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---S 57 M + I A + RL+ +A+N++N +T GF+ ++ F ++ ++ K+ + Sbjct: 1 MNPALWISKTGIQAQDARLTAIANNLANVNTTGFKRDRMIFEDLFYQVEKQPGSKVDDNN 60 Query: 58 FVASGKEYLS----------KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 SG + + G+ +T LD A+ G + ++ G TR G+ Sbjct: 61 VSPSGVQMGNGTRLVGSQKVFTEGNITTTNQSLDVAIIGQGFLQVKMANGETGYTRAGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ DG L +A G I+IP ++ E GE++ + + + L Sbjct: 121 SLSKDGVLQTAQGL-----PLEPEIRIPADATKISISETGEVAVTRGSGTTPEAVDRIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNI---PPTPLEDLSGV--TVKRGFLEDSNANSMYEMGQMIH 215 S G + ++ P + +G +K+G LE SN + EM MI Sbjct: 176 ASFINPAGLLALGDNLFQKTDASGDANPGDPGNGALGKLKQGSLEGSNVQVVEEMVDMIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + T ++ + + + +++ Sbjct: 236 AQRTYEMNTKVLSAADNMLQQLGQSV 261 >gi|78067836|ref|YP_370605.1| flagellar basal body rod protein FlgF [Burkholderia sp. 383] gi|77968581|gb|ABB09961.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 252 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKI 56 M + + + VA+N++N T GFR + V +D Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSTSDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W ++++ G TR G V ++G LV Sbjct: 61 TYVLASTPGADYAPGPITRTGNPLDVAVQGAGWLSVQAADGSEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G IS ++ M L + D + Sbjct: 121 NAS-NLPVVGNGG-PISVPPNAE-VTIGKDGTISALMPGDPPTAVAIVDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LTRGNDGLFRTADGNPADADPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|182680548|ref|YP_001834694.1| flagellar basal body rod protein FlgG [Beijerinckia indica subsp. indica ATCC 9039] gi|182636431|gb|ACB97205.1| flagellar basal-body rod protein FlgG [Beijerinckia indica subsp. indica ATCC 9039] Length = 262 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 104/268 (38%), Gaps = 33/268 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + +I A + + +A+N++N +T F+ + +F++++ + Sbjct: 1 MKALSIAATGMAAQDLNVQVIANNIANMNTTAFKRARAEFTDLLYQAERLQGVANRGQSN 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + Q V + G+ +TG +LD AL G WF + SP G + TR G F Sbjct: 61 MIPEGAQLGLGVRTAAIRNLHVQGTLTNTGNKLDLALNGRGWFQVTSPEGETLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 G LV+ G + I IP V + G +S + I + L Sbjct: 121 STNATGQLVTTDGYLV-----NPNITIPTDATDVAVNQSGVVSVTRNGQTSAQQIGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + R+ + TP D+ T+ +G+LE SN + + E+ +I Sbjct: 176 TNFANEAGLTPLGSNLYRQTEASGTPVSGTPG-DIGFATINQGYLETSNVDPVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + +I ++ +N+ Sbjct: 235 SAQRAYEMNSKVIQAADEMATTISKNMG 262 >gi|167623362|ref|YP_001673656.1| flagellar basal body rod protein FlgF [Shewanella halifaxensis HAW-EB4] gi|167353384|gb|ABZ75997.1| flagellar basal-body rod protein FlgF [Shewanella halifaxensis HAW-EB4] Length = 247 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSM-QAFGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++GD W A+++ G TR G + + G L + G Sbjct: 59 TETPSANFSSGPIKTTGRDLDIAVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PI +P E + + G +S + + + + L + + Sbjct: 119 T-PVMGDNG-PIVLPLPIEKVEISQDGIVSVRPSGATAEVIEEVGRIKLVNPGN--QNLM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V + G +E SN N+++EM MI L ++F ++ E Sbjct: 175 RGEDGLFRLMSGENAPSDPSVGLLSGAVEGSNVNAVHEMVSMIDLQRQFEMQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|294679031|ref|YP_003579646.1| flagellar basal-body rod protein FlgG [Rhodobacter capsulatus SB 1003] gi|294477851|gb|ADE87239.1| flagellar basal-body rod protein FlgG [Rhodobacter capsulatus SB 1003] Length = 261 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 111/267 (41%), Gaps = 34/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I A + R+ +++N++N T G+ + +F++++ + Sbjct: 1 MRALQIAATGMSAQQMRVEVISNNLANMSTTGYNARRAEFADLMYQQATRPGTITANDGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V S ++ G STG +LD A++G + + P G TRDG Sbjct: 61 IVPAGVQIGLGVRSTAVSITLAQGPLASTGGDLDLAIDGYGFLEVTLPSGASAYTRDGGL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K + DG +V++ G YPV+ I +P ++ GE+ + +++ + L Sbjct: 121 KRSADGQIVTSDG-YPVVPG----ITLPDDATTISINAAGEVYAYFTNQVQPQLLGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E P D GV +K+G+LE+S+ +++ E+ ++I Sbjct: 176 AGFTNEKGLEAIGSNLFLETEASGAPTVAAPGTDGLGV-IKQGYLEESSVDAVREITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + +I ++ ML+A + Sbjct: 235 KAQRGYEMNAKVITAADE-MLQATTQV 260 >gi|107023952|ref|YP_622279.1| flagellar basal body rod protein FlgF [Burkholderia cenocepacia AU 1054] gi|116691039|ref|YP_836662.1| flagellar basal body rod protein FlgF [Burkholderia cenocepacia HI2424] gi|170734373|ref|YP_001766320.1| flagellar basal body rod protein FlgF [Burkholderia cenocepacia MC0-3] gi|254246966|ref|ZP_04940287.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|105894141|gb|ABF77306.1| Flagellar basal-body rod FlgF [Burkholderia cenocepacia AU 1054] gi|116649128|gb|ABK09769.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia HI2424] gi|124871742|gb|EAY63458.1| Flagellar basal body rod protein [Burkholderia cenocepacia PC184] gi|169817615|gb|ACA92198.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia MC0-3] Length = 252 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++N T GFR + V + D Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSNIDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W ++++ G TR G V ++G LV Sbjct: 61 TYVLASTPGADYAPGPITRTGNPLDVAVQGPGWLSVQTADGSEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D Sbjct: 121 NAS-NLPVIGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPD--A 175 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 176 ATLTRGNDGLFRTADGNPADVDPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ + + Sbjct: 236 QTADQN-EQTANQL 248 >gi|302874614|ref|YP_003843247.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|307690775|ref|ZP_07633221.1| flagellar basal body rod protein FlgG [Clostridium cellulovorans 743B] gi|302577471|gb|ADL51483.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] Length = 255 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 19/256 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + F ++ A + +L T+++N++N +T G+R ++ FS++V N + S Sbjct: 1 MLSLFWNSKSSMNAQQNKLDTISNNIANVNTTGYRALQSNFSDLVYDSYNRLGTPNSGKD 60 Query: 59 ----VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 + +G S GS + T +FAL+G +F + + G TR+G FK+ Sbjct: 61 TELLIGTGTRLASTIRNDVQGSLLETKVSTEFALDGPGFFKITTADGTEAYTRNGSFKID 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATMGLYSVDM 165 +G L G Y ++ P++ + F V G I+ K + + + +++ Sbjct: 121 SNGDLCDDKGNYLSIEFNGQPVKFNPNN--FAVNPDGTITVKEGEAARTVGRIPIFNAIG 178 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + F +S P + + + +G+LE+SN + EM MI + F + Sbjct: 179 NDSFSSIADSLYVP-KDGVQVYRENNTDILQGYLENSNVDMSKEMTDMIVTQRAFELSSK 237 Query: 226 LIDENEKSMLEAIRNI 241 ++ ++ M + NI Sbjct: 238 VLSTGDQ-MWGIVNNI 252 >gi|256003243|ref|ZP_05428235.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281418479|ref|ZP_06249498.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|255992934|gb|EEU03024.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281407563|gb|EFB37822.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316939268|gb|ADU73302.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 259 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 106/262 (40%), Gaps = 26/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M + LA +++ V++N++N +T F+ + F +++ ND + Sbjct: 1 MIRGLYTSGWSMLANSKQMDVVSNNLANVNTTAFKKDTLILESFPDMLVRRINDSRSASN 60 Query: 58 FVA----------SGKEYLSKEVGSFISTGTELDFALE--GDAWFALESPRG-----IIL 100 G+ + G T LD A+ A+F + P G Sbjct: 61 PSGRLGNVQLGNDVGEVFTYYTQGQLQKTDNNLDMAISNCDTAFFTVAVPGGNGEYTEYY 120 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 TRDG F + G LV+ G Y V+ I E F+V + G I Q G+ +A + + Sbjct: 121 TRDGSFALNAYGQLVTKEG-YLVMGQNG---VITLNSENFSVSDDGTIIQDGEAVARLLI 176 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + ++ + E V++G+LE SN NS+ EM MI + + + Sbjct: 177 RNFTDTTTLRKVGSNLVQRTENTQ--EQPFDGVVRQGYLEQSNVNSINEMINMITIMRSY 234 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 + ++ + ++ +A+ I Sbjct: 235 EANQKILQAQDGTLEKAVNEIG 256 >gi|15644291|ref|NP_229343.1| flagellar basal-body rod protein FlgF [Thermotoga maritima MSB8] gi|170288995|ref|YP_001739233.1| hypothetical protein TRQ2_1206 [Thermotoga sp. RQ2] gi|281412685|ref|YP_003346764.1| flagellar basal-body rod protein FlgF [Thermotoga naphthophila RKU-10] gi|4982110|gb|AAD36610.1|AE001800_20 flagellar basal-body rod protein FlgF [Thermotoga maritima MSB8] gi|170176498|gb|ACB09550.1| protein of unknown function DUF1078 domain protein [Thermotoga sp. RQ2] gi|281373788|gb|ADA67350.1| flagellar basal-body rod protein FlgF [Thermotoga naphthophila RKU-10] Length = 249 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 26/258 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDIDQK 55 M L +L +A++++N DT G++ + F EV N ++ + Sbjct: 1 MTRGIYNAAMGMLVDMAKLDRIANDLANVDTAGYKQDREAFRAYLRREVFRQEPNPVESR 60 Query: 56 ISFVASG---------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 V G + G T A+ G+ +F +E G TR+G F Sbjct: 61 TKKVPIGPLEYATVLDEVRTDLSQGPVEETDVPYHLAINGEGFFRIEFNGGEYYTRNGEF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDM 165 V +G +V+ G Y +LD ++ F V E+G + G ++ +G+Y+++ Sbjct: 121 TVNSEGYIVTNYGGY-LLDENGERVRFFDD---FTVDEEGYVRDAYGNIVTRIGVYNLEN 176 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + F + + P+P E+ + +G++E SN +++ M MI + + Sbjct: 177 PEKF----GNTLFTGENPSPSENF---RIMQGYVEKSNVDALKAMVDMISAMRHYELSQR 229 Query: 226 LIDENEKSMLEAIRNIAS 243 + N++ + I ++AS Sbjct: 230 AVTVNDELNGKLINSLAS 247 >gi|116328474|ref|YP_798194.1| endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331206|ref|YP_800924.1| endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121218|gb|ABJ79261.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124895|gb|ABJ76166.1| Endoflagellar distal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 287 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 109/289 (37%), Gaps = 52/289 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------------SEVVGAI 48 M G + + R+ +++N++N D F+ F + VG + Sbjct: 1 MLRGMYTGANGMIIQQTRMDVISNNLANVDKTAFKRDTTVFKTFPELLLHRFDEDGVGKV 60 Query: 49 KNDIDQKISFVA-------SGKEYLSKEVGSFISTGTELDFALEGD------AWFALESP 95 V + Y E G+ T D L+ A+F++ + Sbjct: 61 PMGSFDTAPVVGKLGLGGEVNEVYTRFEQGAVKKTENPFDIMLQDRPGNEHPAFFSVMTN 120 Query: 96 RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV- 154 RG L+R G F + +G LV+ G +P++ PI++ F + E GE+ G++ Sbjct: 121 RGERLSRSGAFVMDTNGYLVTPQG-FPLMGENG-PIRV--ARGNFLIKENGEVWINGEIG 176 Query: 155 -------------------IATMGLYSVDMSQGFVRRENSGISPN---IPPTPLEDLSGV 192 + + + +V+ + + +S + PTP E Sbjct: 177 NDPRNGTSLDKNRFETPVLLDRLKIRTVENPRHLDKEGDSFYADTPESGEPTPFELKDEP 236 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ +G+LE SN + + EM +MI + + + + + + + + I + Sbjct: 237 SILQGYLEASNVSVVTEMVEMIEVNRSYEANQKTVQTQDSLLGKLINEV 285 >gi|28900124|ref|NP_799779.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|260365774|ref|ZP_05778270.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|260880696|ref|ZP_05893051.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|260897698|ref|ZP_05906194.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|260899391|ref|ZP_05907786.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|28808407|dbj|BAC61612.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086222|gb|EFO35917.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus Peru-466] gi|308092230|gb|EFO41925.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AN-5034] gi|308109302|gb|EFO46842.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus AQ4037] gi|308115005|gb|EFO52545.1| flagellar basal-body rod protein FlgG [Vibrio parahaemolyticus K5030] gi|328470103|gb|EGF41014.1| flagellar basal body rod protein FlgG [Vibrio parahaemolyticus 10329] Length = 261 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T +LD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPSGVQLGSGVRVVGTQKVFTQGNTQNTTQDLDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN------VGEKGEISQKGKVIATMGL 160 + +G +V++ G IQIP F+ V + + + L Sbjct: 121 HINSEGLMVNSQGL-----PLEPQIQIPDNATSFSVGVDGTVTTTTADDPTPQQLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLED-----LSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + P ++ ++K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLFRETEASGPADELIAGADGAGSIKQGALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|291613039|ref|YP_003523196.1| flagellar basal-body rod protein FlgF [Sideroxydans lithotrophicus ES-1] gi|291583151|gb|ADE10809.1| flagellar basal-body rod protein FlgF [Sideroxydans lithotrophicus ES-1] Length = 247 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 12/244 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + Q+ ++V+ N++N +T GFR F V + + +FV Sbjct: 1 MDRLIYTAMTGASHTLQQQASVSQNLANINTPGFRASIDAFRSV--PLVGEGLPTRTFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G STG LD A++G W A++ G TR+G F+V +G L + SG Sbjct: 59 DSTAGADFTPGVIQSTGRSLDVAVDGKGWIAVQDANGNEAYTRNGSFQVLPNGILQTNSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRE 173 + D PI IP E ++ + G IS QK V+ L + + + R Sbjct: 119 LNVMGDSG--PITIPPDTE-VSIAKDGTISTVPTTNQKNGVVVVGRLKLTNPPEDQLVRG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + P + + VTV G LE SN N + M MI L ++F+ L+ + + Sbjct: 176 EDALFRMKDGNPADADAKVTVVSGSLESSNVNMVESMVNMISLARQFDQQMKLLQTADDN 235 Query: 234 MLEA 237 +A Sbjct: 236 AKQA 239 >gi|254463756|ref|ZP_05077167.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium Y4I] gi|206684664|gb|EDZ45146.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium Y4I] Length = 261 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 110/265 (41%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ----KIS 57 + I A + R+ T+++N++N +T + + +F+++ + + Sbjct: 1 MRALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGT 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + + G+ T +LD A++G+ + + P G TRDG Sbjct: 61 VLPTGVQVGLGVRPAAVSVHLSQGALQQTNNDLDVAIDGNGYLEVTLPSGQSAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G S I IP ++ +GE+ S +G+++ L Sbjct: 121 KRSAEGLIVTSDGFAV-----SPEITIPDDATSISINAEGEVYGYFQDSPEGQLLGQFTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S +G + E T ED G T+++G+LE S+ +++ E+ ++I Sbjct: 176 ASFTNPKGLEAIGSNLFTETEASGAATVTTAGEDGLG-TLRQGYLEGSSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAVDQMMGATTQ 259 >gi|315497881|ref|YP_004086685.1| flagellar basal-body rod protein flgg [Asticcacaulis excentricus CB 48] gi|315415893|gb|ADU12534.1| flagellar basal-body rod protein FlgG [Asticcacaulis excentricus CB 48] Length = 262 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 31/259 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + A + + T++ N++N +TVGF+ + +F +++ + Sbjct: 1 MRALRTATTGMSAQQLNVDTISHNIANMNTVGFKKQRAEFQDLLYQNVERMGAQSSESGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V +G Y GS T D ++G +F + P G TR G F Sbjct: 61 VVPTGIQVGGGVKTGSVYRILTQGSATRTDNPYDIMVDGRGYFQVLMPSGETAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 V D G LV+ G I PQ + + + G++S VI + + Sbjct: 121 AVNDQGQLVTDDGYLV-----QPQITFPQDTKEVTISKTGQVSVTQDGVTAPTVIGQLQV 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 S G ++ + P G T+ +G+ E SN +++ E+ +I Sbjct: 176 ASFFNEAGLEAIGDNLYLQSGASGAPNIGTPGDVGYGTLMQGYTEASNVDAVSEITSLIV 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I ++ + Sbjct: 236 AQRAYEMNSKIIKTADEML 254 >gi|296531728|ref|ZP_06894556.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] gi|296267944|gb|EFH13743.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] Length = 252 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 11/251 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L+ QLAL Q++ VA+N++N T G+R + F V + ++I+FV Sbjct: 1 MDSPSTVSLSGQLALRQQMDVVANNLANATTSGYRGDRTLFQSYVTRLAVP-GREIAFVQ 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 Y+ G STG LD A+EG+A+F ++ P G TRDGRFK+ D L + G Sbjct: 60 DRATYIENRQGPIGSTGNPLDLAIEGEAFFGVQRPGGAPGYTRDGRFKIRPDNVLADSQG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKV--IATMGLYSVDMSQGFVRRENS 175 + VL PI +P++ + G I + +G+V + LY+ +G + + Sbjct: 120 R-AVLGEGGAPITLPERISAIEIRANGNILVTSEGRVEQAGCIALYAGGDMRGLRKSGDG 178 Query: 176 GISPNI----PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 P P + V + +G LE S ++ E+ + + + + S+ +I +++ Sbjct: 179 LFEIPAESVQPVDPDAPGTRVRLAQGALEGSTVQTVSELANLALVQRAYESMQRIISDDD 238 Query: 232 KSMLEAIRNIA 242 + I + Sbjct: 239 SRIRRLIETVG 249 >gi|313200562|ref|YP_004039220.1| flagellar basal-body rod protein flgf [Methylovorus sp. MP688] gi|312439878|gb|ADQ83984.1| flagellar basal-body rod protein FlgF [Methylovorus sp. MP688] Length = 246 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + ++ +T A N++N + GF+ F V I ++ +FV Sbjct: 1 MDRMIYTAMSGAKHILEQQATTAHNLANATSTGFKAQVDSFRAV--PIVSEGLPTRAFVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ I T +LD A++G W A++ G TR+G KV ++G L +A G Sbjct: 59 DTTVATDFTPGTIIGTSRDLDIAIQGRGWIAVQRLDGSEAYTRNGSLKVNENGILQTADG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVR 171 VL PI IP DE +G+ G +S ++ + L + D S + Sbjct: 119 -LTVLGDGG-PITIPP-DERIAIGKDGTVSTVSRVTVPSPTNIVGRIKLVNPDEST--LV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ P + + + V G LE SN N + M MI L ++F + L++ E Sbjct: 174 RGTDGLFSTQNGQPAQADANIQVASGALEGSNVNVVDAMVNMISLARQFETQMKLLENAE 233 Query: 232 KSMLEA 237 + +A Sbjct: 234 NNANKA 239 >gi|149188067|ref|ZP_01866362.1| flagellar basal body rod protein FlgF [Vibrio shilonii AK1] gi|148838055|gb|EDL54997.1| flagellar basal body rod protein FlgF [Vibrio shilonii AK1] Length = 249 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + + F Sbjct: 1 MDRALYLSMSGAKQNMQALQLRANNLANASTPGFRADLAQARSM--QAYGEGMPSRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + E GS ++TG +LD +EG W ++ G LTR+G +V +G LV+ +G Sbjct: 59 TERPGHNFEQGSVVTTGRDLDVTIEGQGWISVLDKNGKEGLTRNGSLRVDQNGLLVNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 VL PI +P +G G +S + ++ + L + D + + Sbjct: 119 NL-VLGERGTPITVPIPLRKIEIGRDGTVSVIPQDAPADEMEIVDRIKLTNTDN-RSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P + V + G +E SN N++ EM +I L ++F L+ E Sbjct: 177 DTNGLFRNKDPQLGYTASANVQLMTGAIEGSNVNAVGEMTSLIDLQRQFEMQVKLMSTAE 236 Query: 232 KSMLEA 237 M +A Sbjct: 237 D-MDKA 241 >gi|258514011|ref|YP_003190233.1| hypothetical protein Dtox_0696 [Desulfotomaculum acetoxidans DSM 771] gi|257777716|gb|ACV61610.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 263 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 27/262 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T G+++ +V+F +V+G Q S V Sbjct: 1 MIRSLYSGVSGMKNHQTRMDVIGNNIANVNTTGYKSSRVQFKDVLGQTIAG-GQVASGVT 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSA 117 GS +T D + G+ +F ++ P + TRDG F V D G LV++ Sbjct: 60 IAGINKDFTQGSQTATENSTDLYIHGNGFFIVQDPGDPSILYYTRDGSFHVDDTGQLVNS 119 Query: 118 SGKYPVLDMASVPI---QIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQG 168 G S I +P N+ G+I S + +GL + Sbjct: 120 LGYKVCSSDGSTEIDPFTVPLD--SINIDMNGKISYCTGGSTTPEDGGQIGLAMFNDLNR 177 Query: 169 FVRRENSGISPNIPPT-----PLEDLSGV-------TVKRGFLEDSNANSMYEMGQMIHL 216 + + N+ + P P E + G TV LE SN + E MI Sbjct: 178 LINKGNNLYQYDNKPNTDGSDPAEPIFGAPGSIGLGTVISNNLEMSNVDLTNEFSNMIIT 237 Query: 217 TQKFNSITTLIDENEKSMLEAI 238 + + + + +I +++ + E I Sbjct: 238 QRGYQANSKVITTSDEMLQELI 259 >gi|254227985|ref|ZP_04921415.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|151939481|gb|EDN58309.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] Length = 261 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 104/260 (40%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T ELD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 EVPSGIQLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN------VGEKGEISQKGKVIATMGL 160 V +G +V++ G IQIP F+ V + + + L Sbjct: 121 HVNSEGLMVNSQGL-----PLEPQIQIPDNASSFSVGVDGTVTTTTADDPTPQQLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTP------LEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + P ED +G+ +K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAVGGNLFRETEASGPADELIAGEDGAGL-IKQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 235 TTQRAYEMNAKVVSAADDML 254 >gi|295111397|emb|CBL28147.1| flagellar basal-body rod protein FlgG, Gram-negative bacteria [Synergistetes bacterium SGP1] Length = 268 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 101/267 (37%), Gaps = 38/267 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---S 57 M + + +A + L V+ N++N +T G++ + F +++ + + + S Sbjct: 1 MLRALWSSASGMIAQQTNLDVVSHNLANVNTQGYKKRRADFEDLLYQVWREPGTPVEPNS 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEG------DAWFALESPRGI-IL 100 V +G + G F T ++D+A+ G +A+F + G Sbjct: 61 TVPTGVQVGLGTRVTATPSFMTQGHFQITDNKMDWAIAGQTMAGENAFFQVTQQDGTIAY 120 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKV 154 TR G +++ DG +VS G + +P+ + G + + + Sbjct: 121 TRAGAWEIDGDGQIVSEDGLLL-----EPAMVVPENATSVQLTRTGRVMVTIPGQTEPQE 175 Query: 155 IATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 I + L G + E S I P ++ TV++G LE SN + Sbjct: 176 IGQLELARFINPAGLRALGDRLFLETSASGAPIVGQPGQNGM-PTVRQGVLEMSNVQVVE 234 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSML 235 EM MI + + + + I ++ + Sbjct: 235 EMVGMIIAQRAYEANSKGIQTADELLR 261 >gi|162147478|ref|YP_001601939.1| flagellar basal body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] gi|209545587|ref|YP_002277816.1| flagellar basal body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] gi|161786055|emb|CAP55637.1| putative flagellar basal-body rod protein flgG [Gluconacetobacter diazotrophicus PAl 5] gi|209533264|gb|ACI53201.1| flagellar basal-body rod protein FlgG [Gluconacetobacter diazotrophicus PAl 5] Length = 262 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 115/268 (42%), Gaps = 34/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S +I A + T+++N++N T G++ + +F +++ + S Sbjct: 1 MMPSLDIAATGMQAQTTNVDTISNNIANMTTTGYKRRRAEFQDLIYQDVRRVGTMSSDTG 60 Query: 58 -----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGR 105 V + Y E G+ T LD A++G +F + P G TRDG Sbjct: 61 DLVPAGAQIGLGVRTAGIYRINEQGTLEQTSNALDMAIQGPGYFQVTLPSGEYAYTRDGT 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMG 159 F +++DG++V+A G YP+ S I +P E V + G++ + +V + Sbjct: 121 FSLSEDGTIVTADG-YPL----SPNITLPNNAENITVDQSGQVQYTISGQTQAQVAGQIQ 175 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L G + + TP G+ +++GF+E+S+ N + E+ + Sbjct: 176 LGIFQNENGLAAMGQNLFTQTTSSGDAILGTPQAQGYGL-IQQGFIEESSVNVVTEITDL 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + +I +++ ML+ + N+ Sbjct: 235 ITAQRAYEMNSKVITASDE-MLQTLTNL 261 >gi|114330362|ref|YP_746584.1| flagellar basal body rod protein FlgF [Nitrosomonas eutropha C91] gi|114307376|gb|ABI58619.1| flagellar basal-body rod protein FlgF [Nitrosomonas eutropha C91] Length = 247 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L + +TV+ N++N T GFR F V + + +FV Sbjct: 1 MDRLIYTAMTGALHTLTQQATVSHNLANASTTGFRAQADAFRAV--PVYGESLPTRAFVL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G+ T LD A++G W ++ G TR G K +G L + G Sbjct: 59 DSTTGADFTPGAIQQTDRPLDVAIQGSGWITVQLENGEEAYTRHGNLKTDANGVLQTQQG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + + PI IP D +G+ G +S +I + L VD + Sbjct: 119 FN--IKGETGPITIPP-DSRVAIGKDGSVSVLPSDSRITAVSIIGRIKL--VDPPAEQLV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R + G+ V + G LE SN N++ EM +MI L ++F+ +++ + Sbjct: 174 RGDDGLFRLKQGGEAPASGKVALIDGALESSNVNAVSEMVKMITLARQFDMQMKMLENAQ 233 Query: 232 KSMLEA 237 ++ +A Sbjct: 234 QNAQQA 239 >gi|304321132|ref|YP_003854775.1| flagellar basal-body rod protein FlgF [Parvularcula bermudensis HTCC2503] gi|303300034|gb|ADM09633.1| flagellar basal-body rod protein FlgF [Parvularcula bermudensis HTCC2503] Length = 238 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 7/230 (3%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++ Q L + + +A+N++N T GF++ FSE V + +S + Sbjct: 9 VSRQGGLLKAVQMIANNIANASTPGFKSEGAIFSEYVSE-GRSLATSLSMGRFVGQSTDY 67 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G TG DFA++G+ +F + +P G LTR G + +G +V +G P+LD Sbjct: 68 ASGPLKQTGGTYDFAIQGEGFFKVSTPAGERLTRAGSYTTDLEGVIVDPAGN-PLLDEGG 126 Query: 129 VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 I IP VG+ G +S G++ A +G+Y+ G R + + Sbjct: 127 GEITIPPDAVSVGVGQDGTLSVDGEIFAKIGVYT---PLGEPERVGDNLWRVPDGDAV-- 181 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V +GF+E SN + E +++ + + + + D+ + + I Sbjct: 182 FEEGRVLQGFIEGSNVQPVAEFAKLMLAQRMYEAGQKMADQEHERLSTLI 231 >gi|89068731|ref|ZP_01156117.1| hypothetical protein OG2516_06821 [Oceanicola granulosus HTCC2516] gi|89045694|gb|EAR51756.1| hypothetical protein OG2516_06821 [Oceanicola granulosus HTCC2516] Length = 261 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 35/264 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------- 48 + I LA + + +++N++N +T GF++ + F +++ Sbjct: 1 MKALGIATTGMLAQQTNVDVISNNIANANTTGFKSSRAAFQDLIYQNVAREGALTAEDGT 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGR 105 +D + G L+ G I+TG +LD A++G +FA+ P G TRDG Sbjct: 61 VRPTGVDIGLGVQTVGTVRLNT-QGGLIATGNDLDLAIDGPGYFAVNLPDGSQGYTRDGG 119 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMG 159 F+V +G LV+ G + IP+ + E G + + + Sbjct: 120 FRVNAEGQLVNLQGH-----EIDPGLVIPELTTKVEINESGVVMAYVENDPAPVELGQLT 174 Query: 160 LYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L + G N+ +P P E G+ +++G LE SN N + ++ + Sbjct: 175 LTTFMNDSGLRPVGNNLFLQSEASGEPVPAVPGEPGIGI-IRQGHLEGSNVNIIQQITDL 233 Query: 214 IHLTQKFNSITTLIDENEKSMLEA 237 I + + + I+ ++ M A Sbjct: 234 IAAQRAYEMNSKAIETADQMMNTA 257 >gi|197335127|ref|YP_002156698.1| flagellar basal-body rod protein FlgG [Vibrio fischeri MJ11] gi|197316617|gb|ACH66064.1| flagellar basal-body rod protein FlgG [Vibrio fischeri MJ11] Length = 262 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 108/265 (40%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++T+++N++N TVGF+ + F ++ N + + Sbjct: 1 MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + SG + ++ + G+ +T +D +EG +F + P G I TR+G+F Sbjct: 61 ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G++V+ Y + I +P+ VG GE+S Q +VI + Sbjct: 121 TLNDEGAIVTTGAGYRLEPE----IVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E G+ V++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPVGQNLYLPTGASGDPQEGTPGLEGFGAVRQSMLEASNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I +K M + Sbjct: 237 AQRVYEMNSKVISAVDK-MASFVNQ 260 >gi|323495376|ref|ZP_08100453.1| flagellar basal body rod protein FlgF [Vibrio brasiliensis LMG 20546] gi|323310299|gb|EGA63486.1| flagellar basal body rod protein FlgF [Vibrio brasiliensis LMG 20546] Length = 249 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + + GS I+TG +LD ++G W ++ G LTR+G KV +G LVS +G Sbjct: 59 TERPGHNFQQGSVITTGRDLDVTIQGQGWISVLDKTGQEGLTRNGNLKVDVNGLLVSGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 VL PI +P +G G IS + ++ + L S +Q + Sbjct: 119 NL-VLGETGAPITLPIPVSKVEIGNDGTISVVPQGAPADAIEIVDRIKLTS-TNNQSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E + V + G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRAKDPNAAYEADADVKLLTGAIEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KSMLEA 237 M +A Sbjct: 237 D-MDKA 241 >gi|261253613|ref|ZP_05946186.1| flagellar basal-body rod protein FlgF [Vibrio orientalis CIP 102891] gi|260937004|gb|EEX92993.1| flagellar basal-body rod protein FlgF [Vibrio orientalis CIP 102891] Length = 249 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM-QAYGEGVPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + + GS I+TG +LD ++GD W ++ G LTR+G V +G L + +G Sbjct: 59 TERPGHNFQQGSVITTGRDLDVTIQGDGWISVLDQTGKEGLTRNGNLNVDVNGLLTNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P +G G IS + V+ + L +Q + Sbjct: 119 -HLVLGETGAPITLPIPVSKVEIGNDGTISVVPQGAPADAIEVVDRIKLTR-TNNQSLFK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P T E + V + G +E SN N++ EM +I L ++F ++ E Sbjct: 177 DINGLFRAKDPNTAYEADADVKLLTGAIEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAE 236 Query: 232 KSMLEA 237 M +A Sbjct: 237 D-MDKA 241 >gi|260466619|ref|ZP_05812807.1| flagellar basal-body rod protein FlgG [Mesorhizobium opportunistum WSM2075] gi|259029625|gb|EEW30913.1| flagellar basal-body rod protein FlgG [Mesorhizobium opportunistum WSM2075] Length = 262 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 92/258 (35%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I A + L +A+N++N +T G++ + +FS+++ + Sbjct: 1 MKALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNAS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRF 106 V + G STG D AL G WF +E G + +R G F Sbjct: 61 LVPEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDMALTGRGWFQIEGADGGTLYSRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 G LV+ G + I +P V + G++ + + + + Sbjct: 121 NTNATGQLVTVDGASVI-----PAINVPVDAVEVIVNKTGQVFARIDGQTDLQNLGQLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ P D T+++G+LE SN + + E+ ++I Sbjct: 176 ANFANEAGLAPLGDNLFQETTASGPANVGVPGDPGFATIQQGYLEASNVDPVKEITELIS 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I + Sbjct: 236 AQRAYEMNSKVIQAADDM 253 >gi|325295398|ref|YP_004281912.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065846|gb|ADY73853.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 238 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 11/242 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT-IKVKFSEVVGAIKNDIDQKISFVA 60 + + A ++L T A+N++N +T GF+ I+ + S+ + K D + + F Sbjct: 5 LQALYVLAAGGERAVEQLDTAANNIANINTPGFKKLIEEEMSQHIPDNKGDANNLLIFPR 64 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 ++ E G+ T LD AL+G+ +FA+++ G + TR+G F + +G LV + G Sbjct: 65 FKATHIVLEQGTLQKTDNPLDLALKGNGFFAVKTKTGELYTRNGHFFLNAEGKLVDSKGN 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVLD++ I + K+E ++ E G + Q K +A + + + Q +S + N Sbjct: 125 -PVLDISDKEILL-IKNEPIHITEDGVVYQGNKKVAVLKIVNF---QSVKPIGDSYYAGN 179 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P E V +GFLE SN + + EM ++I+ ++F LI ++ L++ Sbjct: 180 GTPLPTE----AKVLQGFLESSNVDPVKEMVELINAQRRFEIYGNLIRGLDQLNLKS-NE 234 Query: 241 IA 242 I Sbjct: 235 IG 236 >gi|83858806|ref|ZP_00952328.1| flagellar basal-body rod protein FlgG [Oceanicaulis alexandrii HTCC2633] gi|83853629|gb|EAP91481.1| flagellar basal-body rod protein FlgG [Oceanicaulis alexandrii HTCC2633] Length = 261 Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 104/265 (39%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + + A + ++ N++N +T+ F+ + +F +++ + S Sbjct: 1 MRALSTAATGMEAQSLAVEVISHNLANMNTIAFKRQRAEFEDLLYQTISQPGANSSNAGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V +G Y E G T D A+ G +F ++ P G TR G F Sbjct: 61 IVPTGVQVGLGVNAGSVYRITEQGGMSETNNPYDVAISGQGYFRVQLPDGNDAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ +G +V+A G Y V+ I IP + + +G++ + +V+ L Sbjct: 121 SLSPNGEIVTADG-YAVMPG----IVIPAEARQVVINNQGQVQVLLDGQPQPQVVGQFEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + ++ + + P + G ++++ F+E SN +++ E+ +I Sbjct: 176 ATFPNEAGLEQIGDNLLLESAASGAPNLGAPTDPGFG-SLRQRFVEVSNVDAVTEITSLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ + + Sbjct: 235 QAQRAYEMNARVITAADEMLATSSN 259 >gi|167628970|ref|YP_001679469.1| flagellar basal-body rod protein, putative [Heliobacterium modesticaldum Ice1] gi|167591710|gb|ABZ83458.1| flagellar basal-body rod protein, putative [Heliobacterium modesticaldum Ice1] Length = 267 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 29/268 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGAIKNDIDQK-- 55 M + L + A+N++N +TV F+ + F E++ +D Sbjct: 1 MIRGLYTSASGMLVQQTNQDVTANNLANVNTVSFKKDRAVFRGFPEMLIRRMHDFSPAEP 60 Query: 56 --------ISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTR 102 I + +G T D A+ G +F + P G TR Sbjct: 61 GQAEKNPLIGRIGTGAVVDAIWTDPTSAGLRVTQNPTDLAIIGRGYFVVMGPDGEERYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 +G+F + DG+LV+ G + V A I+IPQ + G I +A + + Sbjct: 121 NGQFSLRADGTLVTTEG-FAVQGTAGA-IRIPQG-GNLRIDSDGRIFSGDTEVAQLRIVG 177 Query: 163 VDMSQG----FVRRENSGISPNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 D + G V+ +S N + ++ G LE +N N + EM QMI Sbjct: 178 YDETPGQAPPLVKAGDSLYRLNEQGDGGGVRDLAIGEREIRSGALELANVNVVQEMVQMI 237 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + I + ++ +A + Sbjct: 238 SAARAYEANQKAIQSQDGTLEKACTELG 265 >gi|21672606|ref|NP_660673.1| flagellar basal body rod protein FlgG [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008454|sp|Q8K9K4|FLGG_BUCAP RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|21623237|gb|AAM67884.1| flagellar basal-body rod protein FlgG [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 260 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 109/263 (41%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S I A + ++ +++N++N T GF+ + F +++ S Sbjct: 1 MIPSLWISKTGLDAQQINMNVISNNLANVSTNGFKRSRAVFEDLMYQTMRQAGTNSSIDT 60 Query: 59 -------VASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G +S E G+ T + D A+ G +F ++ P G I TRDG F Sbjct: 61 TLPSGLQLGTGVRPVSTEKIYSQGNLSKTDSSKDVAINGPGFFQVQLPDGNIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGL 160 ++ +G LV+ SG + ++ P I N+G G +S + I + L Sbjct: 121 QLDQNGQLVTNSGYPIIPEINIPPNSI-----NMNIGRDGIVSVTIQGQTQPISIGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E I TP + +G+ + +G++E SN N E+ MI Sbjct: 176 INFVNHSGLESLGENLYQETQASGNPIDTTPGLNGTGL-LYQGYVETSNVNVAEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I+ +++ + + Sbjct: 235 QTQRAYEINSKSINTSDQMLQKL 257 >gi|260774939|ref|ZP_05883840.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC BAA-450] gi|260609194|gb|EEX35352.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC BAA-450] Length = 249 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 14/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q + A+N++N T GFR + + D F Sbjct: 1 MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSM--QAYGDGMPSRVFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + + GS I+TG +LD ++ W ++ G LTR+G KV +G L + +G Sbjct: 59 TERPGHNFQQGSVITTGRDLDVTIQDQGWISVLDNTGKEGLTRNGNMKVDVNGMLTTGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 VL PI IP VG G IS + ++ + L S +Q + Sbjct: 119 NL-VLGETGAPITIPIPISKIEVGTDGTISVVPQGAPADAIEIVDRIKLTS-TNNQSLYK 176 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E +GV + G LE SN N++ EM +I L ++F ++ E Sbjct: 177 DVNGLFRSKDPNAAYEMDAGVKLLTGALEGSNVNAIGEMTNLIDLQRQFEMQVKMMSTAE 236 Query: 232 KSMLEA 237 + M +A Sbjct: 237 E-MDKA 241 >gi|124516714|gb|EAY58222.1| putative flagellar basal body rod protein [Leptospirillum rubarum] Length = 267 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 109/266 (40%), Gaps = 28/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------- 49 M+ + ++ A EQ + + +N++N +T GF+ +V F + + Sbjct: 1 MRQAEFALVSGAQAQEQLMDVLTNNLANVNTPGFKRDRVTFRTYLPHREWLHKTPSDQPG 60 Query: 50 -------------NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + + ++ GSF STG LD A++G+ +F + +PR Sbjct: 61 FRMTPWGEFPTPWGMAGKDVPHAGVDGIHVGYAQGSFRSTGNPLDVAIKGEGFFRILTPR 120 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEISQKGKVI 155 G +L+R+GRF + G LV+ G Y VL I++P+ V G + + +V+ Sbjct: 121 GEVLSRNGRFTLDRGGRLVTHEG-YGVLGEDGKNIRLPESVPGGVRVKADGTVLKGNRVM 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + + + G + + G+ T V + GF E SN N +EM +MI Sbjct: 180 GRLAVVVPENGTGHLAKVGDGLFMADGKTAPVADPDV-LAGGF-ESSNVNGTFEMVRMIE 237 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + F + + + + +I Sbjct: 238 AMRSFETHLKALQTLNELTRRTVNDI 263 >gi|59712479|ref|YP_205255.1| flagellar basal body rod protein FlgG [Vibrio fischeri ES114] gi|59480580|gb|AAW86367.1| flagellar distal rod protein FlgG [Vibrio fischeri ES114] Length = 262 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 108/265 (40%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++T+++N++N TVGF+ + F ++ N + + Sbjct: 1 MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + SG + ++ + G+ +T +D +EG +F + P G I TR+G+F Sbjct: 61 ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQVTMPDGNIGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + D+G++V+ Y + I +P+ VG GE+S Q +VI + Sbjct: 121 TLNDEGAIVTTGAGYRLEPE----IVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQINT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E G+ V++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPVGQNLYLPTGASGDPQEGTPGLDGFGAVRQSMLEASNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I +K M + Sbjct: 237 AQRVYEMNSKVISAVDK-MASFVNQ 260 >gi|163738060|ref|ZP_02145476.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis BS107] gi|163742544|ref|ZP_02149930.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis 2.10] gi|161384129|gb|EDQ08512.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis 2.10] gi|161388676|gb|EDQ13029.1| flagellar basal-body rod protein FlgG [Phaeobacter gallaeciensis BS107] Length = 261 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 108/265 (40%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ T+++N++N +T G+ + +F+++ Sbjct: 1 MRALKIAATGMTAQQLRVETISNNLANMNTTGYNARRAEFADLHYQQVTRAGTVNASDGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + + G+ TG +LD A++G + + P G TRDG Sbjct: 61 VLPTGVQVGLGVRASAISIHLAQGALSQTGNDLDVAIDGKGYLEVTLPSGQSAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G S I IP ++ GE+ + +G+++ + L Sbjct: 121 KRSAEGLVVTSDGF-----TVSPDITIPSDARNVSINADGEVYAYFDETAEGQLMGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E +P E+ G T+++G+LE S+ +++ E+ ++I Sbjct: 176 AGFANPKGLEALGSNLFVETEASGAATVASPGENGLG-TLRQGYLEASSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAVDQMMGATTQ 259 >gi|328543156|ref|YP_004303265.1| flagellar basal-body rod FlgG [polymorphum gilvum SL003B-26A1] gi|326412902|gb|ADZ69965.1| Flagellar basal-body rod FlgG [Polymorphum gilvum SL003B-26A1] Length = 259 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 97/262 (37%), Gaps = 29/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + +I A E + +++N++N T G++ + F +++ + Sbjct: 1 MKALHIAATGMKAQELNVEVISNNVANMRTTGYKRQRADFQDLLYQNLRRMGTDSSNAGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ TG ++D A+ G+ +F ++ P G TRDG F Sbjct: 61 IVPTGVQIGSGVKTAATARIMTQGTIEQTGKDMDVAIRGEGFFQIQLPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYS 162 + +G+LV+ G LD I IP + G + + + L Sbjct: 121 ERDANGTLVTIDGY--TLDPG---IVIPNDARDLTISANGTVQAVVGVATQQFGQIQLAR 175 Query: 163 VDMSQGFVRRENS-GISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLT 217 G ++ + P + G +++ +LE SN +++ E+ +I Sbjct: 176 FVNKSGLEAIGDNLYLETEASGQPQVGIPGEEGYGDLQQSYLEMSNVDAVSEISDLIAAQ 235 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ Sbjct: 236 RAYEMNSRIIQAADEMYSTTTN 257 >gi|56421867|ref|YP_149185.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426] gi|56381709|dbj|BAD77617.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426] Length = 276 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 37/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + LA E+R+ + +N++N +T G++ F E++ + D Sbjct: 1 MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYKADAAAMRAFPELLMSRLEDQPIPTA 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDA 88 I ++ V + + G TG D AL G Sbjct: 61 SRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDIALVDGQVPVDRASGQRGAL 120 Query: 89 WFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +FA+ + +G TR+G F ++ DG L + G Y VLD I P E F V + G Sbjct: 121 FFAVANGQGEVRYTRNGHFTLSPDGYLTTQEGWY-VLDANGERI--PLSSERFAVRDDGT 177 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANS 206 I + +G+ Q V+ N P P + TVK+ FLE SN + Sbjct: 178 IIDENGTATRLGVAFAANPQTLVKEGNGLFRSTTGPLPQAPGNVTYTVKQRFLERSNVDI 237 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + ++ ++S+ +A+ + Sbjct: 238 ERTMTDLLAAYRAFEANQKIVQAYDRSLDKAVNEVG 273 >gi|325529015|gb|EGD06028.1| flagellar basal body rod protein FlgF [Burkholderia sp. TJI49] Length = 252 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++N T GFR + V + D Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSTVDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W +++ G TR G V +G LV Sbjct: 61 TYVLASTPGADFAPGPITRTGNPLDVAVQGAGWLSVQLADGSEAYTRAGNLHVDQNGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVVGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LTRGNDGLFRTADGNPADADPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|253998487|ref|YP_003050550.1| flagellar basal-body rod protein FlgF [Methylovorus sp. SIP3-4] gi|253985166|gb|ACT50023.1| flagellar basal-body rod protein FlgF [Methylovorus sp. SIP3-4] Length = 246 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + ++ +T A N++N + GF+ F V I ++ +FV Sbjct: 1 MDRMIYTAMSGAKHILEQQATTAHNLANATSTGFKAQVDSFRAV--PIVSEGLPTRAFVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ I T +LD A++G W A++ G TR+G KV ++G L +A G Sbjct: 59 DTTVATDFTPGTIIGTSRDLDIAIQGRGWIAVQRLDGSEAYTRNGSLKVNENGILQTADG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVR 171 VL PI IP DE +G G +S ++ + L + D S + Sbjct: 119 -LTVLGDGG-PITIPP-DERIAIGRDGTVSTVSRVTVPSPTNIVGRIKLVNPDEST--LV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ P + + + V G LE SN N + M MI L ++F + L++ E Sbjct: 174 RGTDGLFSTQNGQPAQADANIQVASGALEGSNVNVVDAMVNMISLARQFETQMKLLENAE 233 Query: 232 KSMLEA 237 + +A Sbjct: 234 NNANKA 239 >gi|312115249|ref|YP_004012845.1| flagellar basal-body rod protein FlgG [Rhodomicrobium vannielii ATCC 17100] gi|311220378|gb|ADP71746.1| flagellar basal-body rod protein FlgG [Rhodomicrobium vannielii ATCC 17100] Length = 261 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 97/257 (37%), Gaps = 30/257 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + ++ +A + + +A+N++N +TV F+ + +F++++ + Sbjct: 1 MRALSVAATGMVAQQTNVEVIANNIANANTVAFKRSRAEFADLLYQSERAAGVPNRSDAD 60 Query: 54 --QKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRF 106 + S + G + ++ GS TG LD AL G WF + + + TR G F Sbjct: 61 AIPEASQIGLGVQPVAIRSLHTQGSLTKTGNSLDLALNGRGWFQITGANNETLYTRAGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLY 161 G LV+ G Y V+ I IP V G + + + + Sbjct: 121 SKNASGQLVTPDG-YTVIPS----ITIPTNTTSIQVNTDGTVYVDPGTGVMAQVGQLTIA 175 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + G N+ I + TV++ ++E SN + + E+ +I Sbjct: 176 TFVNDAGLEALGNNLFRETISSGSAQVQVPGSEGYATVQQYYVESSNVDPVQEITNLISA 235 Query: 217 TQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 QRNYEMNSKVIQAADEM 252 >gi|226939373|ref|YP_002794446.1| FlgF1 [Laribacter hongkongensis HLHK9] gi|226714299|gb|ACO73437.1| FlgF1 [Laribacter hongkongensis HLHK9] Length = 247 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 103/246 (41%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + +E + T A+N++N T GF+ F + + D ++ Sbjct: 1 MDKMLYIAMNGAKHVELQQQTTANNLANAHTPGFKAELNAFRAL--PVVGDGTPTRAYSV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G I+TG + DFA+ G WFA++ P+G TR G F + ++G + + G Sbjct: 59 DHTTGHDESQGPMITTGNDQDFAVRGRGWFAVQDPQGNEAYTRAGGFVLDENGIMRTRDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVR 171 + V+ PI +P ++ +GE G +S +V+ + L V + Sbjct: 119 R--VIVGEGGPITVPPNSQVM-IGEDGTVSAVQTDQIPRTVQVVDRIKL--VGGEPRDLF 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ E GV V G LE SN N + + QMI ++F L+ + Sbjct: 174 KGEDGLFRRRDGQIAEADDGVRVATGMLEGSNVNPVDALTQMISHGRQFEFNVKLMQNAD 233 Query: 232 KSMLEA 237 ++ A Sbjct: 234 QNARRA 239 >gi|229825258|ref|ZP_04451327.1| hypothetical protein GCWU000182_00611 [Abiotrophia defectiva ATCC 49176] gi|229790630|gb|EEP26744.1| hypothetical protein GCWU000182_00611 [Abiotrophia defectiva ATCC 49176] Length = 274 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 109/274 (39%), Gaps = 35/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQ 54 M S + +A + L T+++N++N +T GF+T ++F ++ ++ + Sbjct: 1 MLRSLWSAASGMMAQQVNLDTISNNIANINTTGFKTQSMEFKSLLYQQLKTKSTDSEGNP 60 Query: 55 KISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 K V G + G+ + TG LD ++G+ +FA++ TR+G Sbjct: 61 KPIGVQVGLGVRNASITAKFTQGAALDTGEMLDLFIQGNGFFAVKVGEKTAYTRNGHMVF 120 Query: 109 T--DDG-SLVSASGKYPVLDMASVPIQIPQ--KDEIFNVGEKGEI----------SQKGK 153 + DG L ++ G P+L PI+I + ++ G + + K Sbjct: 121 SSVADGWELTTSDGN-PILSTKGTPIKIDSKWDPKDISIDLSGNVLHRVDDKEAGTTKYD 179 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSM 207 + LY + G R S L+ +K G+LE SN ++ Sbjct: 180 NFGKIALYQFNNPAGLNRSGGSLYYETPASGEARSEDTDAGLNKSLIKSGYLEGSNVSAA 239 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM MI + + + I +++ + +A N+ Sbjct: 240 DEMVNMIVTQRAYQLNSKAITASDEMLEQA-NNL 272 >gi|253996318|ref|YP_003048382.1| flagellar basal-body rod protein FlgF [Methylotenera mobilis JLW8] gi|253982997|gb|ACT47855.1| flagellar basal-body rod protein FlgF [Methylotenera mobilis JLW8] Length = 246 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ +T + N++N + GF++ F V + + +FV Sbjct: 1 MDRMIYTAMTGAKHILEKQATTSHNLANATSTGFKSQIDSFRAV--PVLSTGLPTRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ ST LD A++GD W A++ G TR+G K + +G L +A+G Sbjct: 59 DSTSGSDFNSGAIQSTNRNLDIAVKGDGWLAVQRADGSEAYTRNGSLKTSPNGLLQTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + D PI IP D ++G+ G +S +I + L V+ Q + Sbjct: 119 LTIMGD--GGPITIPP-DVAVSIGKDGTVSTVNNLTLPGPSNIIGRIKL--VNPPQANLV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R + G+ P + V+V +G LE SN N + M MI L+++F + LI E Sbjct: 174 RADDGLFTTKDGNPATADANVSVVQGALESSNVNVVDAMVTMISLSRQFETQMKLIQTAE 233 Query: 232 KSMLEA 237 + +A Sbjct: 234 NNANKA 239 >gi|329929265|ref|ZP_08283018.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] gi|328936634|gb|EGG33077.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] Length = 274 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 34/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + +L + +N++N +TVGF+ +V F +++ + + Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDG 104 V+ G GS ++T D ++GD +F ++ LTR G Sbjct: 61 GGVNAKQIGLGVSIGSIDTLHTPGSAMTTNNPTDLRIDGDGFFMVKLSEDQEVPFLTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMG 159 F V +LV++ G VLD A PIQ+ ++ F + + G I QK + A +G Sbjct: 121 DFHVDVARNLVTSDGML-VLDSAGDPIQLDEEVTAFTIAQNGAIIQKMSDGTTEEGAIIG 179 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV------------TVKRGFLEDSNANSM 207 + + +G + + + P DL+ V + G LE SN + Sbjct: 180 VAKIPNPEGLEKIGGNMYRVTLNAVPDGDLAAVMFDGNNAEEGTGAIIAGQLEMSNVDLT 239 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +MI + F + + +I +++ + E + Sbjct: 240 GEFSEMIVAQRGFQANSRIITTSDEVLQEVVN 271 >gi|148270379|ref|YP_001244839.1| hypothetical protein Tpet_1249 [Thermotoga petrophila RKU-1] gi|147735923|gb|ABQ47263.1| protein of unknown function DUF1078 domain protein [Thermotoga petrophila RKU-1] Length = 249 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 107/258 (41%), Gaps = 26/258 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDIDQK 55 M L +L +A++++N DT G++ + F EV + ++ + Sbjct: 1 MTRGIYNAAMGMLVDMAKLDRIANDLANVDTAGYKQDREAFRAYLRREVFRQEPDPVESR 60 Query: 56 ISFVASG---------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 V G + G T A+ G+ +F +E G TR+G F Sbjct: 61 TKKVPIGPLEYATVLDEVRTDLSQGPVEKTDVPYHLAINGEGFFRIEFNGGEYYTRNGEF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDM 165 V +G +V+ G Y +LD ++ F V E+G + G ++ +G+Y+++ Sbjct: 121 TVNSEGYIVTNYGGY-LLDENGERVRFFDD---FTVDEEGYVRDAYGNIVTRIGVYNLEN 176 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + F + + P+P E+ + +G++E SN +++ M MI + + Sbjct: 177 PEKF----GNTLFTGENPSPSENF---RIMQGYVEKSNVDALKAMVDMISAMRHYELSQR 229 Query: 226 LIDENEKSMLEAIRNIAS 243 + N++ + I ++AS Sbjct: 230 AVTVNDELNGKLINSLAS 247 >gi|254505064|ref|ZP_05117215.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] gi|222441135|gb|EEE47814.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] Length = 262 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 101/267 (37%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + I A + + VA+N++N +T F+ + +FS+++ + Sbjct: 1 MKALAIAATGMSAQQLNVEVVANNIANMNTTSFKRAQAEFSDLLYQAERLQGVPNRGGED 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + Q V + G +TG + D AL+G WF + P + TR G F Sbjct: 61 PVPEGAQLGLGVKTAGIRKLHMQGPLTNTGNQFDIALDGRGWFEITGPDDESLYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 DG LV+ G I +P++ + E G++ K + I + L Sbjct: 121 NKNADGRLVTIDGY-----TVEPAIIVPEETIEVVINETGQVYSKIDGEIQPREIGQLSL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + P + GV V++G+LE SN + + E+ +I Sbjct: 176 ANFANDVGLEPVGGNLFRETPASGAPVAGVPGDPGFGV-VRQGYLESSNVDPVKEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ++ I Sbjct: 235 SAQRGYEMNSKVMKAADEMANTVTNGI 261 >gi|297531535|ref|YP_003672810.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297254787|gb|ADI28233.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 276 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 107/276 (38%), Gaps = 37/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + LA E+R+ + +N++N +T G++ F E++ + D Sbjct: 1 MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYKADAAAMRAFPELLMSRLEDQPIPTA 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDA 88 I ++ V + + G TG D AL G Sbjct: 61 SRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDIALVDGQVPVDRASRQRGAL 120 Query: 89 WFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +FA+ + +G TR+G F ++ DG L + G Y VLD I P E F+V + G Sbjct: 121 FFAVANGQGEVRYTRNGHFTLSPDGYLTTQEGWY-VLDANGERI--PLSSERFSVRDDGT 177 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANS 206 I + +G+ Q V+ N P P + TVK+ FLE SN + Sbjct: 178 IIDENGTATRLGVAFAANPQTLVKEGNGLFRSTTGPLPQAPGNVTYTVKQRFLERSNVDI 237 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + ++ ++S+ +A+ + Sbjct: 238 ERTMTDLLAAYRTFEANQKIVQAYDRSLDKAVNEVG 273 >gi|154249603|ref|YP_001410428.1| hypothetical protein Fnod_0921 [Fervidobacterium nodosum Rt17-B1] gi|154153539|gb|ABS60771.1| protein of unknown function DUF1078 domain protein [Fervidobacterium nodosum Rt17-B1] Length = 250 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 25/258 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M L ++ T+++N++N +T G++ F + I Sbjct: 1 MYRGVYTAAMGMLVDITKIDTLSNNLANVETNGYKADTPTFKAYFNKEIDRIKPEPENRR 60 Query: 53 ------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 V + + G T A+ GD +FA+ I TR+G F Sbjct: 61 VEVKKIGNLEQAVILDEVRTNFSQGILEQTNVPSHIAINGDGFFAVRKANEIFYTRNGEF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-KGKVIATMGLYSVDM 165 +G LV+ G Y +L+ I +P+ F++ E G I G VI + +Y++ Sbjct: 121 IRDSNGRLVNTQGNY-LLNQNGQEIVVPE---TFSIDEAGNILDGNGNVIDRIAVYALSN 176 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R+ + P ED + G++E SN N + EM +MI + + + + Sbjct: 177 P----RKIGDTLFAGQPQNLPED--SFRILPGYIEKSNVNVVREMVKMIEAHRHYEATSK 230 Query: 226 LIDENEKSMLEAIRNIAS 243 I +++ + + I N+ + Sbjct: 231 AIVVHDELLNKVINNVGA 248 >gi|238028848|ref|YP_002913079.1| flagellar basal body rod protein FlgF [Burkholderia glumae BGR1] gi|37360907|dbj|BAC98361.1| flagellar basal-body rod protein [Burkholderia glumae] gi|237878042|gb|ACR30375.1| Flagellar basal-body rod protein [Burkholderia glumae BGR1] Length = 250 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--NDIDQKISF 58 M + + S +A+N++NT T GFR + V ++ D +F Sbjct: 1 MDRLIYTAMTGADQALDQQSVIANNLANTSTTGFRAQLATYRAVPMNFGEASNPDTTRTF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 V S G TG LD A++G W + +P G TR G V ++G LV+A Sbjct: 61 VLSSTPGADYSAGPIARTGNPLDVAVQGKGWLTVLAPDGSEGYTRAGNLHVDENGQLVNA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGF 169 S PV+ PI +P + +G G +S ++ + L + + + Sbjct: 121 S-NLPVVGTGG-PISVPPNGQ-VTIGSDGTVSVLAAGDPPSAIAMVDQLKLVNPEPAS-- 175 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++R + G+ P E V + LE SN N + M M+ + F T LI+ Sbjct: 176 MKRGDDGLFRTTDGNPAEVDPSVVLAPSSLEGSNVNPVSAMVSMLDNARAFQLHTKLIET 235 Query: 230 NEKSMLEA 237 +++ A Sbjct: 236 ADQNEQNA 243 >gi|300024606|ref|YP_003757217.1| flagellar basal-body rod protein FlgG [Hyphomicrobium denitrificans ATCC 51888] gi|299526427|gb|ADJ24896.1| flagellar basal-body rod protein FlgG [Hyphomicrobium denitrificans ATCC 51888] Length = 262 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------- 54 + +I A + + +A+N++N +T GF+ + +F++++ Sbjct: 1 MRALSIAATGMSAQQTNVEVIANNVANINTTGFKRARAEFTDLLYQTDRAAGTLARDDDT 60 Query: 55 ---KISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRF 106 + + + G ++ G+ T +LD AL+G +F ++ I+ TR G F Sbjct: 61 MIPEGNQIGLGVRTVAIRHLSMQGALAPTSNKLDLALDGRGYFQVQGENNEILYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +G LV+ G + I IP + G++ + +++ + + Sbjct: 121 NKDANGQLVTLEGNVVI-----PNITIPSTATDVQINASGQVYAIIGATGQQQLLGQLSI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + REN + P D + +G+LE SN + + E+ ++I Sbjct: 176 ANFANETGLDALGGNLFRENQASGAAVIGNPG-DSGFAKIHQGYLESSNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I + +N+ Sbjct: 235 AAQRAYEMNSKVISAADDMFSTITKNM 261 >gi|89069818|ref|ZP_01157153.1| flagellar basal-body rod protein FlgG [Oceanicola granulosus HTCC2516] gi|89044619|gb|EAR50735.1| flagellar basal-body rod protein FlgG [Oceanicola granulosus HTCC2516] Length = 261 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDID 53 + I A + R+ +++N++N +T G+ + +F+++ +D Sbjct: 1 MRALKIAATGMSAQQMRVEVISNNLANMNTTGYNARRAEFADLHYQQMMRPGTINASDGT 60 Query: 54 QKISFVASGKEYLSKE------VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V G GS STG +LD A+EG + + P G TRDG Sbjct: 61 VLPTGVQLGLGVRPTSVSMMLAQGSLSSTGGDLDIAIEGSGYLEVALPDGRPGYTRDGGL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K + DG +V+A G +PV I IP+ ++ +GE+ + +++ + Sbjct: 121 KRSGDGLIVTADG-FPVAPE----ITIPRDALSISINPEGEVYAYFSDRVEAQLLGQFDI 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G ++ P TP +D G T+++GFLEDS+ +++ E+ +I Sbjct: 176 AGFSNPRGLEAVGSNLFVETEASGPANVTTPGQDGLG-TLRQGFLEDSSVDAVKEVTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + ++ Sbjct: 235 EAQRGYELNSKVISAADQMLGATVQ 259 >gi|167576664|ref|ZP_02369538.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis TXDOH] Length = 258 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 96/256 (37%), Gaps = 30/256 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID----------- 53 I A + +L VA+N++N +TVGF+ +V F ++ ++ Sbjct: 1 MWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPS 60 Query: 54 --QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 Q S GS +TG LD A+ G + + G TR G+ + Sbjct: 61 GIQMGSGTRIVGTQKVFTDGSVQTTGRSLDVAVTGKGFLQVLMANGETGYTRAGQLSINA 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVD 164 +G LV+A G P+ I IP+ +GE G ++ + + L + Sbjct: 121 EGLLVNAQG-LPLQPE----ISIPENATDIAIGENGIVAATMPGASSPSEVGQLQLANFV 175 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQK 219 G + ++ + P + T +K+G LE SN + EM MI + Sbjct: 176 NPAGLLALGDNLYMETVASGPPNEGEAGTDVFGKIKQGALEGSNVQVVEEMVDMIAAQRT 235 Query: 220 FNSITTLIDENEKSML 235 + T ++ + + Sbjct: 236 YEMNTKVLSAADNMLQ 251 >gi|167585195|ref|ZP_02377583.1| flagellar basal-body rod protein FlgF [Burkholderia ubonensis Bu] Length = 252 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++N T GFR + V + D Sbjct: 1 MDRLIYTAMTGASQALDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSTIDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V S G TG LD A++G W +++ G TRDG V DG LV Sbjct: 61 TYVLSSTPGSDFAPGPISRTGNPLDVAVQGAGWLSVQLADGSEAYTRDGNLHVNQDGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S +I M L + D + Sbjct: 121 NAS-NLPVVGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAMIDQMKLVNPDPAT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + +I Sbjct: 178 --ITRGNDGLFRTTDGNPADADPNVVVVPNSLEGSNVNPVNAMVAMIDNARAFQLQSKMI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|326404070|ref|YP_004284152.1| flagellar basal-body rod protein FlgF [Acidiphilium multivorum AIU301] gi|325050932|dbj|BAJ81270.1| flagellar basal-body rod protein FlgF [Acidiphilium multivorum AIU301] Length = 247 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 113/245 (46%), Gaps = 8/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 MQ + I L+ L + + +A+N++N T G+ ++ + + + ++N + Sbjct: 1 MQNTSTIILSRMLTASRNVDVIANNIANVSTPGYESMHLASTTWLDHMRNVTAPPGGSTL 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 ++ S + + G+ +TG LD AL G +F +++P G LTRDG+F + DG++ + Sbjct: 61 AYTQSNGTWRDERPGAIRNTGNALDLALPGGGYFTVQTPNGPRLTRDGQFNLMPDGTIAN 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 A+G Y +L PI +P + + G IS +I +G+ +V Q + + Sbjct: 121 ANG-YSLLSTNGQPITVPPQSGTLTIAADGTISTPQGIIGQVGVVTVPDQQSLTAQGRNL 179 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + P P + +G +E+SN + E+ MI ++ + + + + Sbjct: 180 FKASTTPIP---DPNPQIVQGAIEESNVQPVVEITNMIQASRNYEMLAQFLASEKNRSQT 236 Query: 237 AIRNI 241 AI I Sbjct: 237 AISQI 241 >gi|83716996|ref|YP_438391.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|167614839|ref|ZP_02383474.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis Bt4] gi|257141424|ref|ZP_05589686.1| flagellar basal body rod protein FlgG [Burkholderia thailandensis E264] gi|83650821|gb|ABC34885.1| flagellar basal-body rod protein FlgG [Burkholderia thailandensis E264] Length = 262 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 100/263 (38%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +L +A+N++N +T+GF+ +V F ++ I+ Sbjct: 1 MNQAMWISKTGLQAQDAKLQAIANNLANVNTIGFKRDRVVFEDLFYRIERQPGAQLDQDN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q S GS +TG LD A+ G + + G TR G+ Sbjct: 61 ASPSGIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G LV+A G P+ I IP+ +GE G ++ + + L Sbjct: 121 SINAEGLLVNAQG-LPLQPE----ISIPENATDIAIGENGIVAATMPGASSPSEVGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + ++ P P D+ G +K+G LE +N + EM MI Sbjct: 176 ANFVNPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGANVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + T ++ + + + Sbjct: 235 AAQRTYEMNTKVLSAADNMLQQL 257 >gi|322432975|ref|YP_004210224.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] gi|321165202|gb|ADW70906.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 103/267 (38%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + L +A+N++N+ T GF+ ++ FS+++ + Sbjct: 1 MIRALYTAASGMTAQQLNLDNIANNLANSSTTGFQQRRLAFSDMLYQNTTSPGSAATQQT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + G F STG LD A+ G +F + P G +R G F Sbjct: 61 TNAAGLQVGLGVRPTSTETIQTQGDFNSTGNPLDLAISGGGFFQVLLPNGQTGYSRSGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G++V+A G I IP +G G +S + I ++ + Sbjct: 121 HMDSTGNVVTADGN-----PLQPAITIPPDATNITIGSDGTVSVVQPGTTQSAQIGSIQM 175 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMI 214 G N+ ++ P+ G T+++G LE SN + + E +MI Sbjct: 176 ALFVNPGGLNSVGNNIYLATTASGDPIIGTPGGSEGLGTIQQGTLEASNVSVVDEFVEMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + S + ++ ++ M + + + Sbjct: 236 VAQRSYESNSRVVKAADEMMQQ-LNQL 261 >gi|114765244|ref|ZP_01444376.1| Flagellar basal body rod protein [Pelagibaca bermudensis HTCC2601] gi|114542379|gb|EAU45407.1| Flagellar basal body rod protein [Roseovarius sp. HTCC2601] Length = 261 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 106/267 (39%), Gaps = 34/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I +A + + +++N++N +T GF++ + F++++ ++ + Sbjct: 1 MKALGIAATGMMAQQTNVDVISNNIANANTTGFKSARASFTDLIYENQSREGAVTAEEGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V S G T ++LD A++G +F + P G TRDG F Sbjct: 61 TRPIGLDIGLGVRSVGTLRLNTQGGLTQTESQLDLAIDGRGYFTVNLPDGDQAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +++ +G +V+ G + +P + E G +S + + L Sbjct: 121 RLSAEGQIVNHQGF-----EIDPGVVLPDNTTAVEISETGIVSAYVEGDPIPVEVGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G N+ + IP P + G+ +++G+LE SN + + ++ +I Sbjct: 176 TTFVNDAGMRPLGNNLLEATVASGDAIPALPGDAGVGI-LRQGYLEASNVDIIRQITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I+ ++ M A I Sbjct: 235 QAQRAYEMNSKAIETADQMM-SAANQI 260 >gi|170725956|ref|YP_001759982.1| flagellar basal body rod protein FlgF [Shewanella woodyi ATCC 51908] gi|169811303|gb|ACA85887.1| flagellar basal-body rod protein FlgF [Shewanella woodyi ATCC 51908] Length = 247 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF+ ++ + + A + ++ F Sbjct: 1 MDKLLYVAMSGAKQNMNALAVRANNLANANTDGFKAD-MEQARSMQAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A+ G W A++ G TR G G L + G Sbjct: 59 TENPSANFSSGPIKTTGRDLDIAINGSGWIAVQGADGGEAYTRSGSLSFDTSGLLRNDRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 P++ + PI +P E + + G IS + + + + L + G + Sbjct: 119 N-PIMGDSG-PIVLPLPIEKVEIAQDGIISVRPLGATAEVIEEVGRIKLVNPG--DGNMM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V V+ G +E SN N++ EM +I + ++F ++ E Sbjct: 175 RGADGLFRQMSGEIAPADPRVAVESGAVEGSNVNAVDEMVSLIDIQRQFEMQVKMMKTAE 234 Query: 232 KSMLEAIRNI 241 + M +A ++ Sbjct: 235 E-MDQASSSL 243 >gi|291334316|gb|ADD93977.1| flagellar basal body rod protein FlgG [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 257 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 32/263 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------- 57 ++ A + ++ +A+N++N +T GF+ + F + I + + Sbjct: 1 MHVAKTGLNAQQYKMQVIANNLANVNTTGFKRDRANFESLFYQIVKTAGAQTADDTALTS 60 Query: 58 --FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 V +G + +S + G +ST LD A++G +F P G + TR G Sbjct: 61 PLAVGTGVKVVSTQKLFTQGGLVSTDNSLDLAIDGQGFFQALLPDGRVGYTRSGILSRNA 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVD 164 +G L + SG VL IQ+P NV G +S + + + + + Sbjct: 121 EGVLTTTSGY--VL---QPQIQLPADATSINVSTTGIVSVTEPGNDIAQEVGQISIANFS 175 Query: 165 MSQGFVRRENSGISPNI------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +G + P+ PL+ G V +G++E SN N + ++ MI + Sbjct: 176 NPRGLTPIGENFFVPSAESGVAQEGAPLDGGFG-KVLQGYVESSNVNVVQQLVDMIETQR 234 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + I ++ M RN+ Sbjct: 235 AYEVSSKSITAVDEMMQFISRNL 257 >gi|330721007|gb|EGG99168.1| Flagellar basal-body rod protein FlgF [gamma proteobacterium IMCC2047] Length = 246 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 16/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S I + + + + A+N++N +T+GFR+ + + + + + Sbjct: 1 MDKSLYIAMTGAVQNARGTAIHANNLANVNTMGFRSDYAQARAM--PVYGETYASRVYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ + TG ELD A+ G+ W A+++P G TR G KV G L + +G Sbjct: 59 EENPGTNFAYGTLVETGNELDVAVNGEGWIAVQTPDGGEAYTRAGEMKVDSLGILRNGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ PI +P E +G+ G IS +G + + L + D SQ + Sbjct: 119 -LPVMGQGG-PIALPPF-ERITIGQDGTISIQGAGANPGSLSQVDRIKLVNPDASQ--LY 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + N G+ + V V GFLE SN NS+ + ++I L+++F ++ E Sbjct: 174 KGNDGLMRQRDGQAAPADAAVGVSAGFLEGSNVNSVEALTELISLSRQFELHVKMMKTAE 233 Query: 232 KS 233 ++ Sbjct: 234 EN 235 >gi|308068661|ref|YP_003870266.1| flagellar basal-body rod protein flgG (Distal rod protein) [Paenibacillus polymyxa E681] gi|305857940|gb|ADM69728.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Paenibacillus polymyxa E681] Length = 272 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 107/269 (39%), Gaps = 30/269 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---DQKIS 57 M S G++ + +L + +N++N +T GF++ +V F +++ + Sbjct: 1 MLRSMYSGVSGMKGFQTKLDVIGNNIANVNTTGFKSSRVMFKDILSQTSSGASAPGDAAG 60 Query: 58 FVASGKEYLSKEVGSF---------ISTGTELDFALEGDAWFALESPRGI---ILTRDGR 105 + + + L VGS ++T D + GD +F ++ LTR G Sbjct: 61 GINAKQVGLGSTVGSIDTLHLPGSAMTTNNPTDLRINGDGFFLVKMTGDQEVPYLTRAGD 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIAT--MGL 160 F V + LV++ G + PIQ+ F++ + G I Q G V +G+ Sbjct: 121 FHVDGNRQLVTSDGLFVADSGGGTPIQLNDLTTSFSISQDGTIVQQLSDGTVDNQTKVGV 180 Query: 161 YSVDMSQGFVRRENSGISPNIPP------TPLE----DLSGVTVKRGFLEDSNANSMYEM 210 V +G + S + P+E D + G LE SN + E Sbjct: 181 TKVINPEGLEKIGGSLYRATVNSGEEGAVNPMEANSTDAGTGAIVAGQLEMSNVDLTGEF 240 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + F + + +I +++ + E + Sbjct: 241 TEMIVAQRGFQANSRIITTSDEVLQEVVN 269 >gi|32477362|ref|NP_870356.1| flagellar hook basal body protein flgG [Rhodopirellula baltica SH 1] gi|32447913|emb|CAD77433.1| flagellar hook basal body protein flgG [Rhodopirellula baltica SH 1] gi|327537337|gb|EGF24070.1| flagellar basal-body rod protein FlgG [Rhodopirellula baltica WH47] Length = 268 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 100/261 (38%), Gaps = 30/261 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----NDIDQKIS 57 + A++ +L +A+N++N +T GF+ + F +++ + D Q + Sbjct: 4 QTLYTAATGMEAMQTKLDVIANNLANINTTGFKKDRANFEDLLYRTEVYPGVQDSTQTPT 63 Query: 58 FVASGK--------EYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFK 107 V + + G+ TG +LD A++G +F + P + + TR G Sbjct: 64 AVGTQVGLGVRVTSTQTDQRQGTLQQTGRDLDVAIQGGGYFRVVDPSSQDTMYTRAGNLD 123 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV----IATMGLY 161 + +G LV G V + PI IP + GE+ Q G+ + L Sbjct: 124 INANGELV--MGSAQVGRLLDPPITIPPDATAVVINSNGEVMVRQPGQTELTNQGQIQLA 181 Query: 162 SVDMSQGFVR------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ E P P D GV +++G LE SN + E+ +I Sbjct: 182 QFINPDGLLKNGENLYSETDASGPEQINNPGTDGMGV-LRQGNLEASNVEPVQELIDLIT 240 Query: 216 LTQKFNSITTLIDENEKSMLE 236 + F + + ++ M Sbjct: 241 TQRAFELNSQAVQAGDQVMQN 261 >gi|239907792|ref|YP_002954533.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] gi|239797658|dbj|BAH76647.1| flagellar basal-body rod protein FlgG [Desulfovibrio magneticus RS-1] Length = 260 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 113/262 (43%), Gaps = 28/262 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M S +A++ ++ T+++N++N +TVGF+ + +F +++ N Sbjct: 1 MMRSLWTASTGMVAMQMQIDTMSNNLANVNTVGFKKSRAEFEDLMYQTLQVAGTETVGGN 60 Query: 51 DIDQKIS---FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + + V + G +TG +LD A++G+ +F ++ + TR G FK Sbjct: 61 RLPTGLQVGLGVKPTTVHKFFTQGDMQNTGNQLDIAIQGEGFFKVDVNGRELYTRAGSFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG-----LYS 162 + DG++V+A+G YP+ S +P + + + E G +S A + LY+ Sbjct: 121 LNQDGTIVTANG-YPLQPAFS----VPTETKTITITENGHLSCLDANSAELAATDIPLYT 175 Query: 163 VDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + G + S + + + T+ +GFLE SN + EM +I Sbjct: 176 FINNAGLTAEGRNLYSTSQASGAANEVTPGNQNAGTLAQGFLEMSNVELVDEMVGLIVGQ 235 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + + + + I + + A+ Sbjct: 236 RAYEANSKSITTADGMLQTAVN 257 >gi|89902478|ref|YP_524949.1| flagellar basal-body rod FlgF [Rhodoferax ferrireducens T118] gi|89347215|gb|ABD71418.1| Flagellar basal-body rod FlgF [Rhodoferax ferrireducens T118] Length = 246 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 101/248 (40%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ A R + +++N++N T GFR F V ++ D Sbjct: 1 MDRLIYTAMSGANAAAHRQAVLSNNLANVSTNGFRAELSTFRAV--PVRGDGASTRVMAI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 GS TG LD G+AWFA++ G TR G F+V+ +G+LV+ SG Sbjct: 59 EATAGYVDTPGSAQRTGRGLDAMTTGNAWFAVQGLDGTESYTRSGSFEVSPEGTLVTNSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 VL PI IP E +G G +S Q + + L + R E Sbjct: 119 -LTVLGDGGAPISIPTGGE-VTIGFDGNLSAKVGNQPPTGVGRLKLVTPGADDPLNRSE- 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ PL + + V+ G LE SN N++ M MI ++F + L+ E + Sbjct: 176 DGLFRATSGEPLPNDTNARVQVGSLEGSNVNAIEAMVGMIQTARQFETQMRLLQTAESND 235 Query: 235 LEAIRNIA 242 A + + Sbjct: 236 RSAAQLLG 243 >gi|85712255|ref|ZP_01043306.1| Flagella basal body rod protein [Idiomarina baltica OS145] gi|85693882|gb|EAQ31829.1| Flagella basal body rod protein [Idiomarina baltica OS145] Length = 247 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ + +S A+N++NT+T GF+ ++ + + A + ++ F Sbjct: 1 MDKMLWIAMSGANENMKAVSVRANNLANTNTTGFKAD-LEQARSMQAFGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G +TG LD A+ G W A++ G TR+G ++ G L ++SG Sbjct: 59 TESPGQNFAEGPIRTTGRNLDVAINGQGWIAVQDANGNERYTRNGSLEIDAGGMLRTSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ A P+ IP + +G G IS + + ++ + L V+ V Sbjct: 119 D-PVMGDAG-PVLIPMPIDSLTIGRNGNISIRPQGAPEDANEIVDRIKL--VNPPLNNVE 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G + V ++ G LE SN N++ EM MI L +++ ++ + Sbjct: 175 KTTDGYFALKDGQQALADANVKLEVGALEGSNVNAIGEMTSMIALQRQYEMNVKMMKTAD 234 Query: 232 KSMLEAIR 239 ++ + Sbjct: 235 ENAQRSAT 242 >gi|315648129|ref|ZP_07901230.1| fagellar hook-basal body protein [Paenibacillus vortex V453] gi|315276775|gb|EFU40118.1| fagellar hook-basal body protein [Paenibacillus vortex V453] Length = 274 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 34/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + +L + +N++N +TVGF+ +V F +++ + + Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDG 104 V+ G GS ++T D ++GD +F ++ LTR G Sbjct: 61 GGVNAKQIGLGVSIGSIDTMHTPGSAMTTHNPTDLRIDGDGFFMVKLSEDQEVPFLTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMG 159 F V +LV++ G VLD A PIQ+ F + + G I QK + A +G Sbjct: 121 DFHVDVARNLVTSDGML-VLDSAGDPIQLGDDVTAFTIAQNGAIIQKLSDGTTEAGAIIG 179 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV------------TVKRGFLEDSNANSM 207 + + +G + + + P D++ V + G LE SN + Sbjct: 180 VAKIPNPEGLEKIGGNMYRVTLNAVPDGDVAAVMFEGNDAEEGTGAIIAGQLEMSNVDLT 239 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +MI + F + + +I +++ + E + Sbjct: 240 SEFSEMIVAQRGFQANSRIITTSDEVLQEVVN 271 >gi|296534160|ref|ZP_06896654.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] gi|296265515|gb|EFH11646.1| flagellar basal-body rod protein FlgG [Roseomonas cervicalis ATCC 49957] Length = 262 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S NI +A + + +++N++N T ++ + +F +++ + S Sbjct: 1 MRSLNIAGTGMMAQQTNVEVISNNIANMSTTAYKRRRAEFQDLLYENLRRTGSQSSDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y G T D A+ G+ +F ++ P G TR G F Sbjct: 61 VLPSGAQLGLGVRTAAIYRIGAQGDLSQTQNSFDLAIRGNGYFPVQMPTGETAYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 ++D G +V+A G I IP + GE+ + + + L Sbjct: 121 GLSDAGMIVTADGFQV-----GAGIVIPAGARDVTINATGEVLVKIDGQAALQNVGQLQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ P G V +G+LE SN N + E+ +I Sbjct: 176 GTFPNEGGLEAIGDNMFLETPASGGVTLGNPGAAGYG-QVLQGYLETSNVNVVQEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I +++ + Sbjct: 235 TAQRAYEMNSKVITASDEML 254 >gi|330501139|ref|YP_004378008.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina NK-01] gi|328915425|gb|AEB56256.1| flagellar basal-body rod protein FlgG [Pseudomonas mendocina NK-01] Length = 261 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 109/265 (41%), Gaps = 31/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M ++ + A ++ +S VA+N++N +T GF++ +V F ++ AI+ Sbjct: 1 MSSALWVSKTGLAAQDKAMSAVANNLANVNTNGFKSDRVVFEDLFYAIELQPGAQADEVN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V GS +TG +D A+ G +F +E+P G I T +G+ Sbjct: 61 TVPSGIQLGSGVRVAGTQKVFTEGSIQTTGQPMDLAIIGAGFFQVEAPNGDIYYTENGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ +G +V++ G + I++P F VG G ++ + + L Sbjct: 121 QLNAEGMIVNSQGL-----PLTPAIEVPAGSSRFTVGSDGIVTAVLAGDTLPSELGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G + + P+E + G +K+G LE SN + M MI Sbjct: 176 VNFTNPGGLEALGGNLYRETVASGEPVEGVPGADGLGNLKQGVLEGSNVQVVEAMVAMIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + + ++D M + + Sbjct: 236 IQRAYEANAKVLDAAS-GMQQFLNQ 259 >gi|99082800|ref|YP_614954.1| flagellar basal body rod protein FlgG [Ruegeria sp. TM1040] gi|99039080|gb|ABF65692.1| Flagellar basal-body rod protein flgG [Ruegeria sp. TM1040] Length = 261 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 112/265 (42%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ----KIS 57 + I A + R+ T+++N++N +T + + +F+++ + + Sbjct: 1 MRALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQISRAGTVNASDGT 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + + G+ TG ELD A++G+ +F + P G TRDG F Sbjct: 61 VLPTGVQVGLGVRPAAVSVYLNQGALSQTGNELDLAIDGNGYFEVTLPSGETAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K + +G +V+ G YPV S I +P+ + ++ +GE+ + +++ L Sbjct: 121 KRSAEGLIVTNDG-YPV----SPEITVPEDAKSISINGEGEVYAYFNDTIEAELLGQFTL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + P D G +++ +LEDS+ +++ E+ ++I Sbjct: 176 SGFTNPKGLEAMGGNLFKQTEASGQPNTTEPGADGIGF-LRQKYLEDSSVDAVREITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ M + Sbjct: 235 EAQRGYEMNSKVISAVDQMMSATTQ 259 >gi|209695760|ref|YP_002263690.1| flagellar basal body rod protein FlgG [Aliivibrio salmonicida LFI1238] gi|208009713|emb|CAQ80017.1| flagellar basal-body rod protein FlgG (distal rod protein) [Aliivibrio salmonicida LFI1238] Length = 262 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 30/265 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + ++T+++N++N TVGF+ + F ++ N + + Sbjct: 1 MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFEDLFYQNVNQAGAQSTQNT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + SG + ++ + G+ +T +D +EG +F + P G + +R+G+F Sbjct: 61 ELPTGLMLGSGSKVVATQKVFTNGNAQTTSNGMDMMIEGKGFFQITMPDGNLGYSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + +G++V+ YP+ I +P+ VG GE+S Q +VI + Sbjct: 121 TLNSEGAMVTTGSGYPLEPE----IVVPEDAINVTVGTDGEVSVRLRGQQDNQVIGQITT 176 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + P P E G+ +++ LE SN N E+ MI Sbjct: 177 VDFINPGGLEPVGQNLYLPTGASGDPQEGTPGLEGLGAIRQSMLEASNVNVTEELVNMIE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRN 240 + + + +I +K M + Sbjct: 237 AQRVYEMNSKVISAVDK-MASFVNQ 260 >gi|261420741|ref|YP_003254423.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|319768411|ref|YP_004133912.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261377198|gb|ACX79941.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317113277|gb|ADU95769.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 276 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 107/276 (38%), Gaps = 37/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + LA E+R+ + +N++N +T G++ F E++ + D Sbjct: 1 MLRGLYTAASGMLAQERRVDWLTNNLANAETPGYKADAAAMRAFPELLMSRLEDQPIPTA 60 Query: 52 ----------IDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDA 88 I ++ V + + G TG D AL G Sbjct: 61 SRRAIPTQTVIGPLVTGVYMQELIPNFRQGDVKETGLATDIALVDGQVPVDRASGQRGAL 120 Query: 89 WFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +FA+ + +G TR+G F ++ DG L + G Y VLD I P E F+V + G Sbjct: 121 FFAVANGQGEVRYTRNGHFTLSPDGYLTTQEGWY-VLDANGERI--PLSSERFSVRDDGT 177 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANS 206 I + +G+ Q V+ N P P + TVK+ FLE SN + Sbjct: 178 IIDENGTATRLGVAFAANPQTLVKEGNGLFRSTTGPLPQAPGNVTYTVKQRFLERSNVDI 237 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + ++ ++S+ +A+ + Sbjct: 238 ERTMTDLLAAYRTFEANQKIVQAYDRSLDKAVNEVG 273 >gi|114562343|ref|YP_749856.1| flagellar basal body rod protein FlgF [Shewanella frigidimarina NCIMB 400] gi|114333636|gb|ABI71018.1| flagellar basal-body rod protein FlgF [Shewanella frigidimarina NCIMB 400] Length = 247 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 15/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ A+N++N +T GF+ V+ + A + ++ F Sbjct: 1 MDKFLYIAMSGAKQGMNALAVSANNLANANTDGFKADMVQARSM-QAFGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG +LD A++GD W A+++ G TR G K+ G L+++S Sbjct: 59 MESPGSNFNGGPIKTTGRDLDIAVKGDGWLAVQAADGSEGYTRAGSLKIDSTGMLLNSS- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ + PI +P E + G IS + + +A + L + + Sbjct: 118 NRPVMGASG-PIVLPIPVEKIEISANGIISVRPQGATAEVIEEVARIKLVNPGNEN--LM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ I + GV V+ G +E SN NS++EM MI + +++ ++ E Sbjct: 175 RGEDGLFRLIAGGNAPNDPGVQVESGAVEGSNVNSVHEMVAMIDIQRQYEMQVKMMKNAE 234 Query: 232 K 232 + Sbjct: 235 E 235 >gi|56551505|ref|YP_162344.1| flagellar basal body rod protein FlgG [Zymomonas mobilis subsp. mobilis ZM4] gi|241761149|ref|ZP_04759238.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752888|ref|YP_003225781.1| flagellar basal body rod protein FlgG [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|4378856|gb|AAD19724.1| flagellar basal-body rod protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543079|gb|AAV89233.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ZM4] gi|241374768|gb|EER64229.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552251|gb|ACV75197.1| flagellar basal-body rod protein FlgG [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 263 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 106/262 (40%), Gaps = 33/262 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--------- 55 + A R+ +A+N++N +T F+ + F + + + Sbjct: 6 LQVARTGLDAQNTRMRIIANNLANVNTTAFKRDRAAFETLAYQAERQPGAQSTNSYYYAT 65 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 S V + + GSF++TG LD A+ G +F ++ P G I TR G F+++ Sbjct: 66 GLTLGSGVQTIATERQETQGSFVNTGNSLDLAVSGVGYFQIQLPDGTIGYTRAGNFQLSQ 125 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVD 164 DG +V+ GK P++ I IPQ E +GE G +S + + + + Sbjct: 126 DGQIVTDDGK-PLIPN----INIPQNAEQITIGEDGTVSVQLQGQTQSNQVGQIQTVRFI 180 Query: 165 MSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G + P +D G + +G LE SN N + E+ MI + Sbjct: 181 NPAGLQATGQNLYIETQSSGQPQIGLPQQDGMGY-ILQGELEQSNVNIVQELVDMIETQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRN 240 + + ++ +++ ML+ I Sbjct: 240 AYEVNSKMVKASDE-MLQYINQ 260 >gi|163850063|ref|YP_001638106.1| flagellar basal body rod protein FlgG [Methylobacterium extorquens PA1] gi|218528666|ref|YP_002419482.1| flagellar basal body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240137197|ref|YP_002961666.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254559209|ref|YP_003066304.1| cell-distal portion of basal-body rod biosynthesis protein [Methylobacterium extorquens DM4] gi|163661668|gb|ABY29035.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens PA1] gi|218520969|gb|ACK81554.1| flagellar basal-body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240007163|gb|ACS38389.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254266487|emb|CAX22251.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens DM4] Length = 262 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + L +A+N++N +T GF+ + +F++++ + Sbjct: 1 MRALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGVPNQAGQE 60 Query: 54 --QKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + + G + GS +TG +LD A+ G +F + SP G I TR G F Sbjct: 61 AVPEGAMLGLGVRAAAIRNLHRQGSLANTGNQLDLAVNGRGYFQITSPAGEIQYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKV----IATMGL 160 + G LV+ G Y V I IPQ + E G++ G+V + + L Sbjct: 121 NKNNAGQLVTMEG-YAV----DPAILIPQNTTQVTINESGQVFAKIDGQVALQNVGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G N P+ G +++G+LE SN + + E+ +I Sbjct: 176 ANFANDSGLEPLGNGLYRETPASGAPVVGNPGDVSYGKLQQGYLEGSNVDPVKEITSLIT 235 Query: 216 LTQKFNSITTLIDENEKS 233 + F + +I ++ Sbjct: 236 AQRAFEMNSKVIQAADEM 253 >gi|168335333|ref|ZP_02693429.1| hypothetical protein Epulo_09785 [Epulopiscium sp. 'N.t. morphotype B'] Length = 270 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 29/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + + T+++N++N +TVGF+ V F ++ Q+ + Sbjct: 1 MMRSLWTAATGMTSQQTHVDTISNNIANVNTVGFKQESVNFKTLLYQNMLPTQQEETTNP 60 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV-- 108 V G + G+ I T D A++G +FA+++ + TRDG FKV Sbjct: 61 MLLQMGHGVRVGSISKNFGTGNLIQTNAPTDLAIDGTGFFAVQADNQVSYTRDGSFKVTT 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEI----SQKGK--VIATM 158 T DG LV++ G Y VL S PI + + G + S+ G+ IA + Sbjct: 121 TSDGVIALVTSDGHY-VLSTDSEPITFDENVLSSQITINSYGGVGYKDSETGEDINIADI 179 Query: 159 GLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQ 212 + + G ++ PL + T ++ G+LE SN N EM Sbjct: 180 MVVQFANAAGLEATGDNLFVETAGSGVPLMESEXPTLTKSLLRAGYLEGSNVNIATEMVN 239 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 +I + + + I + + +A++ Sbjct: 240 LIVAQRAYELNSKAISTADTMLGQAVQ 266 >gi|206890142|ref|YP_002249849.1| flagellar hook basal-body protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742080|gb|ACI21137.1| flagellar hook basal-body protein FlgG [Thermodesulfovibrio yellowstonii DSM 11347] Length = 239 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 21/250 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + E LS +++N++N +T G++ F+ + + + + + + Sbjct: 1 MYKGIYITMTGMSMRENELSAISNNLANINTTGYKKQ--SFASRLYPLLSGKPSQSNVIY 58 Query: 61 S--------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 G +Y+ G+ T D ++G+ +F + I+ TR+G F D Sbjct: 59 QDARAQTYFGTQYIDTSQGALKQTHNPFDLGIQGEGFFVVRQGNKILYTREGSFTRDKDN 118 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 LV+ +G VLD + PI I G+ G I G I + L ++ +R Sbjct: 119 YLVTQTG-LRVLDENNNPIII--DGTKIEYGKDGTILVDGNPIGRIKLVKLNN----LRH 171 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + + + + +G++E+SN N M EM QMI + F+ + + Sbjct: 172 VGQSLYEGVEA----GQANGQILQGWIENSNVNPMSEMVQMIQAIRNFDFTQRVTTNFSE 227 Query: 233 SMLEAIRNIA 242 A+ IA Sbjct: 228 LAQRAVSEIA 237 >gi|268317780|ref|YP_003291499.1| flagellar basal body rod protein [Rhodothermus marinus DSM 4252] gi|262335314|gb|ACY49111.1| flagellar basal body rod protein [Rhodothermus marinus DSM 4252] Length = 242 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 104/247 (42%), Gaps = 12/247 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M A+ ++ +A+N++N +T G++ + F E + + S Sbjct: 1 MLLRLQNAAASMTEAIRQQERLANNLANVNTAGYKQERF-FVEALNERLDAERSPRSDRR 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSAS 118 ++ G+ TG+ LD A+EGD +F + TR G+F++ +G L + Sbjct: 60 L-TQWNDLTQGALEHTGSPLDVAIEGDGFFVVTDAATGATFYTRAGQFRLDGEGYLRTID 118 Query: 119 GKYPVLDMASVPIQIPQ--KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G V PIQ+ ++ ++ + G + + +A + + + R E + Sbjct: 119 GLL-VEGEDG-PIQLLPHERNRTLSISQDGVLRADEREVARLRIVRFARPEALQRVEGAR 176 Query: 177 ISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + P P+E ++ GFLE SN N + M +MI +F + +I ++ + Sbjct: 177 FAATDQEPLPVE---TPHLRPGFLESSNVNPVLAMTEMIEHFHRFETQQKVIQTTDQLLG 233 Query: 236 EAIRNIA 242 + R++ Sbjct: 234 QITRDLG 240 >gi|91204383|emb|CAJ70883.1| strongly similar to flagellar distal rod protein [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 110/268 (41%), Gaps = 33/268 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + L V++N+SN +T GF+ +V F +++ + + Sbjct: 1 MLRALYTAATGMKAQQLFLDNVSNNLSNINTTGFKRSQVNFQDLLYSKRYIAGSESAQGF 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V + G+ ++T ELD A++G +F ++ G I TRDG F Sbjct: 61 EIPAGIQLGGGVRTISISKVFSQGNHVNTERELDLAIQGKGFFQIQQSDGSIAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-------KVIATMG 159 ++ G +V+A G S I I ++G G + KG + + + Sbjct: 121 QLNSKGEVVTADGL-----PLSPSITI-TNATEISIGTDGTVYVKGSDPSGTLQNVGQIM 174 Query: 160 LYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 L G N + +P+ ++G + +GFLE+SN ++ E+ +I Sbjct: 175 LTMFPNPSGLDSLGKNLYLETMASGSPIVTVAGEQGTGEIYQGFLENSNVETVTELVSLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + I +++ ML I ++A Sbjct: 235 TAQRAYEINSRAISASDE-MLSTINSMA 261 >gi|225871944|ref|YP_002753398.1| putative flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] gi|225793888|gb|ACO33978.1| putative flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] Length = 245 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 8/232 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKI- 56 M++ + L LA Q L +VA N++N T GFR + F +V+ A + +DQ + Sbjct: 1 MESGYYAALTGLLARSQALDSVASNLANAGTAGFRAQQDYFRDVLAGPRANDSQLDQTVD 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 ++ G L G +TG LD A++G +F +++P G+ TRDGR + G L++ Sbjct: 61 NYGVLGGTLLDLAQGPIQATGNPLDLAIQGGGFFEVQTPNGVRYTRDGRLVRSTKGVLIT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G PVL+ PI +P + +GE G IS G + + ++ ++ E G Sbjct: 121 GDGD-PVLNAKGKPIVLPTGRPV--IGEDGTISVDGAIAGKIAVFQFAGARDL-EAEGVG 176 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + + +G T+++G LE SN + ++ +I + ++ + + Sbjct: 177 LYRPVGKAKPAPATGFTLRQGALEGSNQDVIHGTMDLIFVQRQAQMMEKALS 228 >gi|56964026|ref|YP_175757.1| flagellar basal body rod protein FlgG [Bacillus clausii KSM-K16] gi|56910269|dbj|BAD64796.1| flagellar hook protein FlgE [Bacillus clausii KSM-K16] Length = 267 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 106/265 (40%), Gaps = 27/265 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + +L V +N++N +T GF+ +V F ++V Sbjct: 1 MIRSMYSGISGMKGFQTKLDVVGNNIANVNTHGFKKGRVMFQDMVSQQVQGPMAATPNRG 60 Query: 53 ----DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 Q S G G TG ELD A+ GD +FA++ TR G Sbjct: 61 GVNSKQIGSGSMVGAIDTVHTGGGNQYTGRELDLAINGDGYFAVQIGDDTFYTRAGNIYF 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEIS-----QKGKVIATMG 159 ++G++V++SG Y +L +QI E V ++GEI Q+ V +G Sbjct: 121 DNEGNVVNSSGAY-LLGPDGNRLQIDPALLDDMESTTVNKQGEIIVSIQGQENPVTLQLG 179 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + +G S + P ++ G+LE SN + E +MI Sbjct: 180 IANFANPEGLNSAGGSLFTATPASGPANLVIPGTQGTGDIQSGYLEMSNVDLADEFSEMI 239 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + F + + +I +++ + E + Sbjct: 240 VAQRGFQANSRIITTSDEILQELVN 264 >gi|30248323|ref|NP_840393.1| flagellar basal body rod protein FlgF [Nitrosomonas europaea ATCC 19718] gi|30138209|emb|CAD84217.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 247 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L + +TV+ N++N T GFR F V + + +FV Sbjct: 1 MDRLIYTAMTGALHTMTQQATVSHNLANASTTGFRAQTDAFRAV--PVYGESLPTRAFVL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G+ T LD A++G W A++ G TR G K+ +G L + G Sbjct: 59 DSTTGADFTPGAIQQTNRPLDVAVQGSGWIAVQLENGEEAYTRHGNLKMDANGILQTQQG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + S PI IP D +G+ G +S ++ + L VD + Sbjct: 119 FN--IKGESGPITIPP-DSRIAIGKDGSVSVLPSDSRMTAVSIVGRIKL--VDPPAEQLV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ V + G LE SN N + EM +MI L ++F+ +++ + Sbjct: 174 RGEDGLFRLKEGGQAPVSEKVALIDGALESSNVNVISEMVKMITLARQFDMQMKMLENAQ 233 Query: 232 KSMLEA 237 ++ +A Sbjct: 234 QNAQQA 239 >gi|118588711|ref|ZP_01546119.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] gi|118438697|gb|EAV45330.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] Length = 260 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 98/263 (37%), Gaps = 30/263 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + +I A E + +++N++N T GF+ + F +++ + Sbjct: 1 MKALHIAATGMKAQELNVEVISNNVANMRTTGFKKQRADFQDLLYQNLRRMGTETSDSGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V GS TG ELD A+ G+ +F ++ P G TRDG F Sbjct: 61 IVPTGIQIGSGVKIAATGRIMSQGSLEQTGKELDLAIRGEGFFQIDMPDGTTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLY 161 + +G LV+ G + I IPQ + + G + + + + L Sbjct: 121 ERDANGQLVTIDGY-----SVNPGITIPQTVKDVTISNTGVVQGVDQAGNTVQLGQIQLA 175 Query: 162 SVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHL 216 G ++ + + P G TV++ FLE +N +++ E+ +I Sbjct: 176 RFVNKAGLEAIGDNLYLETDASGAPETSNPGDESYGTVQQYFLEMANVDAVTEIADLISA 235 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ Sbjct: 236 QRAYEMNSQIIQAADEMYSTTTN 258 >gi|121607560|ref|YP_995367.1| flagellar basal-body rod protein FlgF [Verminephrobacter eiseniae EF01-2] gi|121552200|gb|ABM56349.1| flagellar basal-body rod protein FlgF [Verminephrobacter eiseniae EF01-2] Length = 246 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A R + +A+N++N T GFR F V ++ D + F Sbjct: 1 MDHIIYTTMTGAGAAAYRQAVLANNLANISTGGFRAQLSTFRSV--PLQGDGAKTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G TG LD G AWFA++ P G TR G F+++ G L++ G Sbjct: 59 EATSGYDDSAGPVQHTGRNLDALAAGRAWFAVQGPDGTEAYTRAGSFELSPTGQLLTP-G 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 PVL A PI +P +G G IS Q + + + L + +R Sbjct: 118 GLPVLSDAGTPIDMPPGA-DITLGADGSISAKVAGQPAQTVGRLKLATPGAEDPL-QRGG 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ PL + + G LE SN N + M MI ++F L+ + + Sbjct: 176 DGLFRTASGEPLPSDADARMLAGALEGSNVNPVECMVGMIAAARQFEQQMQLLQTAQTND 235 Query: 235 LEAIRNIA 242 A R + Sbjct: 236 KSASRLLG 243 >gi|114762164|ref|ZP_01441632.1| flagellar basal-body rod protein FlgG [Pelagibaca bermudensis HTCC2601] gi|114545188|gb|EAU48191.1| flagellar basal-body rod protein FlgG [Roseovarius sp. HTCC2601] Length = 261 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 110/265 (41%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ----KIS 57 + I A + R+ +++N+SN T G+ + +F+++ + Sbjct: 1 MRALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQVARAGTVSAADGT 60 Query: 58 FVASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + + G+ TG +LD A+EG +F + P + TRDG Sbjct: 61 MLPTGVQLGLGARPAAVTMKLAQGALSQTGGDLDLAIEGRGYFEVTLPSDLAGYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K +G +V++ G PV I IP ++ +GEI + +++ + L Sbjct: 121 KRDGEGLIVTSDG-LPVAPE----IVIPDDATSLSINAEGEIYAYFNDAVEAQLLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E P I T +D G T + G+LEDS+ + +YE+ ++I Sbjct: 176 VGFTNPKGLEAIGGNLFTETEASGPPIQTTAGQDGLG-TFRHGYLEDSSVDPVYEITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + ++ Sbjct: 235 EAQRGYELNSKVISAADQMLGATVQ 259 >gi|126734107|ref|ZP_01749854.1| flagellar basal-body rod protein FlgG [Roseobacter sp. CCS2] gi|126716973|gb|EBA13837.1| flagellar basal-body rod protein FlgG [Roseobacter sp. CCS2] Length = 261 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 120/265 (45%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDID 53 + I A A + R+ +++N++N +T G+ + +F+++ +D Sbjct: 1 MRALKIAAAGMTAQQMRVEVISNNLANMNTTGYNPRRAEFADLHYQQLVRPGTINASDGT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + + G + G+ +TG +LD A+EGD + + P G TRDG Sbjct: 61 VLPTGIQLGLGVRPSAISVMLSQGALGATGGDLDLAIEGDGYLEVTLPSGASAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K+T DG +V++ G YPV+ + +P+ ++ +GE+ + +++ L Sbjct: 121 KLTGDGLIVTSDG-YPVVPD----LTVPRDTRSLSINAEGEVFGYFIDEIQPQLLGQFSL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++G ++ P++ TP ED GV +++G+LEDS+ + + E+ +I Sbjct: 176 AGFTNAKGLEAIGSNLFLETPASGPSVVGTPGEDGLGV-LRQGYLEDSSVDPVREVTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + ++ Sbjct: 235 EAQRGYELNSKVITAADQMLSAMVQ 259 >gi|319781681|ref|YP_004141157.1| flagellar basal-body rod protein FlgG [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167569|gb|ADV11107.1| flagellar basal-body rod protein FlgG [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 262 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I A + L +A+N++N +T G++ + +FS+++ + Sbjct: 1 MKALAIAATGMNAQQTNLEVIANNIANINTTGYKRARAEFSDLLYQVDRTQGVPNRSNAS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRF 106 V + G STG D AL G WF +E G + +R G Sbjct: 61 LVPEGVSIGLGVKTTAVRNVHTQGELTSTGNSFDLALTGRGWFQIEGADGGTLYSRAGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 G LV+ G + I +P V + G++ + + + + Sbjct: 121 NTNATGQLVTVDGAAVI-----PAINVPVDAVEVIVNKTGQVFARIDGQTDLQNLGQLQI 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ P D T+++G+LE SN + + E+ ++I Sbjct: 176 ANFANEAGLAPLGDNLFQETTASGPANVGVPGDPGFATIQQGYLEASNVDPVKEITELIS 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I + Sbjct: 236 AQRAYEMNSKVIQAADDM 253 >gi|296447438|ref|ZP_06889363.1| flagellar basal-body rod protein FlgG [Methylosinus trichosporium OB3b] gi|296255058|gb|EFH02160.1| flagellar basal-body rod protein FlgG [Methylosinus trichosporium OB3b] Length = 262 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 100/259 (38%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + I A +Q + +++N++N +T F+ + +F++++ Sbjct: 1 MRALAIAATGMNAQQQNIEVISNNIANINTTAFKRSRAEFTDLLYQADRLQGVSNRGRDA 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRF 106 + Q V + GS TG +LD AL G WF + P I+ TR G F Sbjct: 61 TVPEGAQTGLGVRLTAIRSLQTQGSLAQTGNQLDLALNGRGWFQVTGPDSEILYTRSGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +G LV+ G S I IP +V + G ++ + + + + Sbjct: 121 STNANGQLVTGDGYLV-----SPTIIIPNNAVSVSVSQSGLVTAVIGGQTNPQQLGQLTI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + R+N + P + GV + + +LE SN +S+ E+ +I Sbjct: 176 ANFANESGLEALGGNLFRQNQASGTPVVGVPGDPGYGV-ISQYYLESSNVDSVKELVNLI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + F + +I ++ Sbjct: 235 AAQRAFELNSKVISAVDEM 253 >gi|195952534|ref|YP_002120824.1| flagellar basal-body rod protein FlgG [Hydrogenobaculum sp. Y04AAS1] gi|195932146|gb|ACG56846.1| flagellar basal-body rod protein FlgG [Hydrogenobaculum sp. Y04AAS1] Length = 263 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 30/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + A A +Q L +++NM+N DTVG++ ++ F +++ D + S Sbjct: 1 MFRAMWTSAAGMTAQQQNLDVISNNMANVDTVGYKQLQPVFDDLIYQTVKDPGMETSQNS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Y G+ TG LD A++G+ +F + P G TR+G+ Sbjct: 61 QNPIGYQLGLGAYIDGTYGIFTQGNVQQTGNPLDVAIQGNGFFQVAMPDGTIAYTRNGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 ++ +G LV+A G I +P N+G G + Q + + + + Sbjct: 121 QLDANGDLVTADGYL-----IQPQITVPPNATSVNIGPDGTVAVTIPGQQGVQTVGQLQM 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + G R N+ P+ G T+ G+ E SN N + EM +I Sbjct: 176 ANFVNPAGLKRIGNNLFEQTQASGNPIVSNPGTQGLGTLLSGYTEASNVNIVNEMVNLII 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + I + A Sbjct: 236 AENAYQFNSKGITAANTMLSTAAN 259 >gi|149912834|ref|ZP_01901368.1| flagellar basal-body rod protein FlgG [Roseobacter sp. AzwK-3b] gi|149813240|gb|EDM73066.1| flagellar basal-body rod protein FlgG [Roseobacter sp. AzwK-3b] Length = 261 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 109/265 (41%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ T+++N++N T G+ T + +FS++ Sbjct: 1 MRALKIAATGMTAQQLRVETISNNLANMSTTGYNTRRAEFSDLHYQQMARPGTVNASDGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + GS +T +LD A++G+ + + P G TRDG Sbjct: 61 VLPTGVQLGLGVRPAAVSIHLAQGSLSATNGDLDLAIDGNGYLEVTLPSGQSAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + DG +V++ G V I IP ++ GE+ + + + I + L Sbjct: 121 KRSADGLIVTSDGFSLV-----PEITIPADVRSISINAAGEVFAYFAETTEAQQIGEITL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G N+ P++ TP +D G T+++G+LEDS+ + + E+ ++I Sbjct: 176 AGFSNPKGLEAAGNNLFLETEASGPSLVSTPGQDGLG-TLRQGYLEDSSVDPVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ + + Sbjct: 235 EAQRGYELNAKVISAADQMLGATAQ 259 >gi|91224197|ref|ZP_01259460.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269965646|ref|ZP_06179759.1| Putative flagellar basal-body rod protein flgG [Vibrio alginolyticus 40B] gi|91191108|gb|EAS77374.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269829714|gb|EEZ83950.1| Putative flagellar basal-body rod protein flgG [Vibrio alginolyticus 40B] Length = 261 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 100/259 (38%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ + A + +++ +++N++N +TVGF+ +V F ++ +I+ ++ Sbjct: 1 MHSALWVSKTGMAAQDTKMTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V G+ +T ELD A+ G +F +E+ G I+ TR+G+F Sbjct: 61 ELPSGIQLGSGVRVVGTQKVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN------VGEKGEISQKGKVIATMGL 160 +G +V++ G IQIP F+ V + + + L Sbjct: 121 HRNSEGLMVNSQGL-----PLEPQIQIPDNAVSFSVGVDGTVTTTTADDPTPQQLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLED-----LSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + P ++ +K+G LE SN + EM MI Sbjct: 176 AKFINPAGLEAMGGNLFRETEASGPADELIAGADGAGIIKQGALEGSNVQVVEEMVDMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ + + Sbjct: 236 TQRAYEMNAKVVSAADDML 254 >gi|260893854|ref|YP_003239951.1| fagellar hook-basal body protein [Ammonifex degensii KC4] gi|260865995|gb|ACX53101.1| fagellar hook-basal body protein [Ammonifex degensii KC4] Length = 260 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 105/259 (40%), Gaps = 23/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSE-VVGAIKNDIDQKI 56 M I + + L A+N++N T GF+ + F+E ++ ++ + I Sbjct: 1 MIRGIYIAASGLNLQQALLDVTANNLANLSTPGFKQDRLTATTFAEVLLYRLEREGITAI 60 Query: 57 SFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 G + Y G+ + TG D AL G+ + ++P+GI R G V +G Sbjct: 61 GTTNYGTLPERSYTDFTQGALVETGNYRDVALVGEGFLVADTPQGIRYFRSGTLFVDREG 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ----- 167 L +A+G VL PIQ+ +E F + G + G+ + + + + Q Sbjct: 121 YLTTATGD-RVLGEGRRPIQV--GEESFTILPDGTVEVAGRTVGRLLVVRIINPQQREGE 177 Query: 168 ------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 G + +E + + + G V++G+LE +N + EM ++ + + Sbjct: 178 LPIWDSGILAKEGRNYYRLVGGSEAPAV-GTLVRQGWLEAANVDLAGEMARLCTCLRAYQ 236 Query: 222 SITTLIDENEKSMLEAIRN 240 + + +++ + I Sbjct: 237 LASRALKTHDELLNRIINQ 255 >gi|157961172|ref|YP_001501206.1| flagellar basal body rod protein FlgF [Shewanella pealeana ATCC 700345] gi|157846172|gb|ABV86671.1| flagellar basal-body rod protein FlgF [Shewanella pealeana ATCC 700345] Length = 247 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSM-QAFGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++GD W A+++ G TR G + + G L + G Sbjct: 59 TETPSANFASGPIKTTGRDLDIAVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDKG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + D PI +P E + + G +S + + +A + L + + Sbjct: 119 TAVMGDNG--PIVLPLPIEKVEISQDGIVSVRPSGATAEVIEEVARIKLVNPGN--QNLM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + V + G +E SN N+++EM MI L ++F ++ E Sbjct: 175 RGEDGLFRLMSGENAPADPSVGLLSGAVEGSNVNAVHEMVSMIDLQRQFEMQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|24214555|ref|NP_712036.1| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] gi|45657887|ref|YP_001973.1| hook protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195518|gb|AAN49054.1| endoflagellar distal basal body rod protein [Leptospira interrogans serovar Lai str. 56601] gi|45601128|gb|AAS70610.1| hook protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 287 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 108/289 (37%), Gaps = 52/289 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF------------SEVVGAI 48 M G + + R+ +++N++N D F+ F + VG + Sbjct: 1 MLRGIYTGANGMIIQQTRMDVISNNLANVDKTAFKRDTTIFKTFPELLLHRFDEDGVGKV 60 Query: 49 KNDIDQKISFVA-------SGKEYLSKEVGSFISTGTELDFALEGD------AWFALESP 95 + + Y E G+ T D L+ A+F++ + Sbjct: 61 PMGSFDTAPVIGKLGLGGEVNEVYTRFEQGAVKKTENPFDLMLQDKPGSEHPAFFSVMTN 120 Query: 96 RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV- 154 RG L+R G F + +G LV+ G +P+L PI++ F + E GE+ G++ Sbjct: 121 RGERLSRSGAFVMDTNGFLVTPQG-FPLLGENG-PIRV--ARGNFLIKENGEVWINGEIG 176 Query: 155 -------------------IATMGLYSVDMSQGFVRRENSGISPN---IPPTPLEDLSGV 192 + + + +V+ + + +S + P P + Sbjct: 177 NDPVNGTSIDKNRFETPVLLDKIKIRTVENPRHLDKEGDSFYADTPESGEPVPFDLKDEP 236 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +V +G+LE SN + + EM +MI + + + + + + + + I + Sbjct: 237 SVLQGYLEASNVSVVTEMVEMIEVNRSYEANQKTVQTQDSLLGKLINEV 285 >gi|322435952|ref|YP_004218164.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] gi|321163679|gb|ADW69384.1| flagellar basal-body rod protein FlgG [Acidobacterium sp. MP5ACTX9] Length = 262 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 107/264 (40%), Gaps = 31/264 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + A + L T+A+N++N+ T GFR+ +V+F +++ + Sbjct: 1 MIRALYTAASGMSAQQANLDTIANNLANSATAGFRSRRVQFEDMIYQNMITPGSPATQST 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 + + + G F T LD A++G +F ++ P G TR+G F Sbjct: 61 VSAGLQIGLGTRTSATEIIQAQGDFNQTQNPLDLAIQGGGFFQIQQPDGTIAYTRNGSFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLY 161 + + G++++ G + I IP + G +S + T+ L Sbjct: 121 LNNQGTIITTEGMSLI-----PSITIPSNATNVTISPYGVVSATLPGQTAAAQLGTLQLA 175 Query: 162 SVDMSQGFVRRENSGISPNI-PPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIH 215 + G NS + P+ D G T+++G+LE+SN + + E QMI Sbjct: 176 NFANPGGLNSAGNSLFTQTTSSGNPVTDTPGGTSGVGTLEQGYLENSNVDVVTEFVQMIL 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + S + ++ + M + I Sbjct: 236 AQRAYESNSKVVHVADD-MYQQIN 258 >gi|188579867|ref|YP_001923312.1| flagellar basal body rod protein FlgG [Methylobacterium populi BJ001] gi|179343365|gb|ACB78777.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] Length = 262 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 100/258 (38%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 + I A + L +A+N++N +T GF+ + +F++++ + Sbjct: 1 MRALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGAPNQAGQE 60 Query: 56 ----ISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + G + GS +TG +LD A+ G +F + SP G I TR G F Sbjct: 61 AVPEGAMLGLGVRAAAIRNLHRQGSLANTGNQLDLAVNGRGYFQITSPAGEINYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 + G LV+ G Y V I IP + E G++ K + I + L Sbjct: 121 NKNNAGQLVTMEG-YAV----DPAILIPANTTQVTINESGQVFAKTDGQVALQNIGQLTL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G N P+ G +++G+LE SN + + E+ +I Sbjct: 176 ANFANESGLEPLGNGLYRETPASGAPVVGNPGDVSYGKLQQGYLEGSNVDPVKEITSLIT 235 Query: 216 LTQKFNSITTLIDENEKS 233 + F + +I ++ Sbjct: 236 AQRAFEMNSKVIQAADEM 253 >gi|16126303|ref|NP_420867.1| flagellar basal body rod protein FlgG [Caulobacter crescentus CB15] gi|221235080|ref|YP_002517516.1| flagellar basal body rod protein FlgG [Caulobacter crescentus NA1000] gi|13637955|sp|Q06172|FLGG_CAUCR RecName: Full=Flagellar basal-body rod protein flgG; AltName: Full=Distal rod protein gi|13423543|gb|AAK24035.1| flagellar basal-body rod protein FlgG [Caulobacter crescentus CB15] gi|220964252|gb|ACL95608.1| flagellar basal-body rod protein flgG [Caulobacter crescentus NA1000] Length = 262 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 34/269 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + + A + + +++N++N +TVGF+ + +F +++ Sbjct: 1 MQALRTAASGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V +G Y E G+ T + LD A++G + + P G TR G F Sbjct: 61 IVPTGVQVGGGVKAGSVYRITEQGTPTLTDSPLDLAIQGKGYMPILLPSGETAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 D G +V+ G I IPQ + + G + K + + + L Sbjct: 121 STNDQGQIVTEDGYLV-----QPGITIPQNATDITISKSGLVQVKLDGQPQPQTVGQIQL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ P E G+ + + + E SN +++ E+ +I Sbjct: 176 ANFLNEGGLEAIGDNLFLETAASGAATLAAPGEPGFGM-LLQHYTEASNVDAVSEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + +I ++ ML+A + S Sbjct: 235 TAQRAYEMNSKVISTADQ-MLQATSQLRS 262 >gi|296122947|ref|YP_003630725.1| flagellar basal-body rod protein FlgG [Planctomyces limnophilus DSM 3776] gi|296015287|gb|ADG68526.1| flagellar basal-body rod protein FlgG [Planctomyces limnophilus DSM 3776] Length = 266 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 100/263 (38%), Gaps = 27/263 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS----- 57 + + A L T+A+N++N T GF+ + F ++ + + Sbjct: 4 RAMYTAASGMQAYMFNLDTIANNLANAGTNGFKRSRTDFEDLYYQYYKLPGTQDTLGNYT 63 Query: 58 --------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 V + G+ + TG +LD A+ GD +F + + TR G F V Sbjct: 64 PIGTAAGLGVRVAGTQIDFSQGALLETGRQLDMAITGDGFFMVRGNNQLFYTRRGEFTVN 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSV 163 +G +V AS + + PI IP + +G +S + + L Sbjct: 124 SNGDVVLASAD--IGRLIDPPINIPPDTVDIGISAEGIVSVIQAGSTVQNQVGQIQLARF 181 Query: 164 DMSQGFVRRENSGIS-PNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQ 218 +G + S + + PL G +++GFLE SN E+ +I + Sbjct: 182 INPEGLYQAGESLYAVTDASGQPLISNPGDQGLGLIRQGFLEISNVEPANELVDLIKTQR 241 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + +I +++ +L+ I N+ Sbjct: 242 NVELNSQVIQASDQ-LLQLITNL 263 >gi|260429403|ref|ZP_05783380.1| flagellar basal-body rod protein FlgG [Citreicella sp. SE45] gi|260420026|gb|EEX13279.1| flagellar basal-body rod protein FlgG [Citreicella sp. SE45] Length = 261 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ----KIS 57 + I A + R+ +++N+SN T G+ + +F+++ + Sbjct: 1 MRALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQIARAGTINASDGT 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + +G + + E G+ TG +LD A+EG +F + P GI TRDG Sbjct: 61 MLPTGVQMGLGARPAAVTMKLEQGALSDTGGDLDIAIEGRGYFEVTLPSGIAGYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K DG +V++ G PV S I IP ++ +GE+ + +++ + Sbjct: 121 KRNADGMIVTSDG-LPV----SPEIVIPDDAISLSINAEGEVYAYFADAVQAQLLGQFTI 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E P I T ++ G T ++G+LEDS+ + +YE+ ++I Sbjct: 176 VGFTNPKGLEAIGGNLFTETEASGPPIQTTAGQEGLG-TFRQGYLEDSSVDPVYEITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + ++ Sbjct: 235 EAQRGYELNSKVISAADQMLGATVQ 259 >gi|220934395|ref|YP_002513294.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. HL-EbGR7] gi|219995705|gb|ACL72307.1| flagellar basal-body rod protein FlgF [Thioalkalivibrio sp. HL-EbGR7] Length = 246 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 16/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ + N++N +T GF+ F+ + ++ Sbjct: 1 MDRMLYVAMSGAKETALTQARNTQNLANANTTGFKASLDVFTS--KQVVGPGHGTRTYAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G +TG +LD A++G+ W A+++P G TR G +V G L + +G Sbjct: 59 TQDMKVDLSPGPLQATGRDLDVAVQGNGWIAVQAPDGTEAYTRAGDLRVDSVGLLTTGTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PVL PI +P E F +G G IS + + + L + + + + Sbjct: 119 -LPVLGEGG-PIAVPPF-ETFEIGSDGTISIRPLGQGANVLAEVDRIKLVNPNPDE--LV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + +GVT+ RG LE SN N++ M MI L + F ++ E Sbjct: 174 RGEDGLIRHQLGVEQPPDAGVTLVRGMLESSNVNTVEAMVNMIDLARHFEMQVKMMKTAE 233 Query: 232 KS 233 + Sbjct: 234 DN 235 >gi|261407975|ref|YP_003244216.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261284438|gb|ACX66409.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 274 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 112/272 (41%), Gaps = 34/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + +L + +N++N +TVGF+ +V F +++ + + Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQTMSGVTPGTDDPS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDG 104 V+ G GS + T D ++GD +F ++ LTR G Sbjct: 61 GGVNAKQIGLGVSIGSIDTLHTPGSAMMTNNPRDLRIDGDGFFMVKLSEDQEVPFLTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMG 159 F + +LV++ G VLD A PIQ+ ++ F + + G I QK + A +G Sbjct: 121 DFHIDVARNLVTSDGML-VLDSAGDPIQLDEEVTSFTIAQNGAIIQKMSDGTTEEGAIIG 179 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV------------TVKRGFLEDSNANSM 207 + + +G + + + P DL+ V + G LE SN + Sbjct: 180 VAKIPNPEGLEKIGGNMYRVTLNAVPDGDLAAVMFEGNNAEEGTGAIIAGQLEMSNVDLT 239 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +MI + F + + +I +++ + E + Sbjct: 240 GEFSEMIVAQRGFQANSRIITTSDEVLQEVVN 271 >gi|167905092|ref|ZP_02492297.1| flagellar basal body rod protein FlgG [Burkholderia pseudomallei NCTC 13177] Length = 258 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 98/259 (37%), Gaps = 32/259 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID----------- 53 I A + +L VA+N++N +TVGF+ +V F ++ ++ Sbjct: 1 MWISKTGLQAQDAKLQAVANNLANVNTVGFKRDRVVFEDLFYRVERQPGAQLDQDNASPS 60 Query: 54 --QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 Q S GS +TG LD A+ G + + G TR G+ + Sbjct: 61 GIQMGSGTRIVGTQKIFTDGSVQTTGQSLDVAVMGKGFIQVLMANGETGYTRAGQLSINA 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVD 164 +G LV+A G P+ I IP+ +GE G ++ + + L + Sbjct: 121 EGLLVNAQG-LPLQPE----ISIPENATDIAIGENGIVAATMPGASSPSEVGQIQLANFV 175 Query: 165 MSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G + ++ P P D+ G +K+G LE SN + EM MI + Sbjct: 176 NPAGLLALGDNLYMETVASGPPNEGEPGTDVFG-KIKQGALEGSNVQVVEEMVDMIAAQR 234 Query: 219 KFNSITTLIDENEKSMLEA 237 + T ++ + + + Sbjct: 235 TYEMNTKVLSAADNMLQQL 253 >gi|134297197|ref|YP_001120932.1| flagellar basal body rod protein FlgF [Burkholderia vietnamiensis G4] gi|134140354|gb|ABO56097.1| flagellar basal-body rod protein FlgF [Burkholderia vietnamiensis G4] Length = 252 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + + + VA+N++NT T GFR + V + D Sbjct: 1 MDRLIYTAMTGASQSLDQQAIVANNLANTSTTGFRAQLANYRAVPMNFGDGSTIDPTTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++V + G TG LD A++G W ++++ G TR G V ++G LV Sbjct: 61 TYVLASTPGADYAPGPITRTGNPLDVAVQGAGWLSVQTADGGEAYTRAGNLHVDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQ 167 +AS PV+ PI +P E +G+ G +S ++ M L + D + Sbjct: 121 NAS-NLPVIGNGG-PISVPPNAE-VTIGKDGTVSALMPGDPPTAVAMVDQMKLVNPDPTT 177 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + R N G+ P + V V LE SN N + M MI + F + LI Sbjct: 178 --LTRGNDGLFRTADGNPADADPNVVVTPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLI 235 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 236 QTADQN-EQSANQL 248 >gi|54307272|ref|YP_128292.1| putative FlgG flagellar basal-body rod protein [Photobacterium profundum SS9] gi|46911692|emb|CAG18490.1| Putative FlgG flagellar basal-body rod protein [Photobacterium profundum SS9] Length = 261 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 106/259 (40%), Gaps = 30/259 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + ++ +++N++N +TVGF+ + F ++ +K Sbjct: 1 MHAALWISKTGLAAQDTQMQVISNNLANVNTVGFKQDRAVFEDLFYQMKKQPGAMTDQQN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V + G++ +T D A+ G +F +E G TR+G+F Sbjct: 61 ENPGGLQLGNGVRVVGTQKLMKTGAYQNTEQATDLAVLGSGFFQIELADGNTGYTRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 +G +V+A+G P++ I+IP+ F+VG G ++ + + I + L Sbjct: 121 HRNSEGMMVTAAG-LPLMPN----IEIPENATNFSVGTDGMVTISTADDPEPQEIGQITL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + + G + P+E + G + + LE SN N + EM MI Sbjct: 176 ANFANAAGLQSLGGNLFKETGASGAPIEGVGGEDGLGQISQFSLEGSNVNVVEEMVNMIT 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + ++ ++ + Sbjct: 236 TQRAYEMNAKVVSSADQML 254 >gi|226313061|ref|YP_002772955.1| flagellar hook protein FlgE [Brevibacillus brevis NBRC 100599] gi|226096009|dbj|BAH44451.1| flagellar hook protein FlgE [Brevibacillus brevis NBRC 100599] Length = 272 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 32/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F +++ + Sbjct: 1 MLRSMYSGISGLRGFQTKLDVIGNNIANVNTVGFKKGRVMFQDILSQNVQGAGAPTAGGK 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGR 105 G GS ++T D ++EGD +F + G I TR G Sbjct: 61 GGTNPTQIGLGASIASIDTVFSAGSPMTTNLPTDLSIEGDGFFMVSPDEGATIYYTRAGN 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF--NVGEKGEISQKGKV-----IATM 158 F +G LV++ G +++ IQI Q D + ++G+ G I+ + T+ Sbjct: 121 FTRDAEGYLVNSQG-MKLMNTDPAAIQISQNDGVVSYSIGKDGVITTVDETGALDSTNTI 179 Query: 159 GLYSVDMSQGFVRRENS--------GISPNIPPTPL-EDLSGVTVKRGFLEDSNANSMYE 209 G+ + + G + N+ G + P TP+ + V++ G LE SN + E Sbjct: 180 GVMTFNNPGGLKKIGNNLYENTVNAGANDGDPMTPVTPADAKVSIIAGQLEMSNVDLSEE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + F + + +I ++ + E + Sbjct: 240 FTEMIVAQRGFQANSRIITTSDTVLEELVN 269 >gi|85715053|ref|ZP_01046038.1| Flagellar basal body rod protein [Nitrobacter sp. Nb-311A] gi|85698250|gb|EAQ36122.1| Flagellar basal body rod protein [Nitrobacter sp. Nb-311A] Length = 255 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 123/254 (48%), Gaps = 15/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + IGL+ Q+ LE+++ VA+N++N +T G++ + F E + + D++ Sbjct: 1 MENALLIGLSRQMMLERQIDVVANNVANVNTNGYKADRSLFEEYLMPGAHEDNFVGRDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +SFV + G T LD A++G+A+ +++P G TRDG ++ G LV Sbjct: 61 LSFVQDRATFHDFAGGPTEQTKNPLDVAIDGEAFLVVQTPNGERYTRDGGLQINAQGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-------KGKVIATMGLYSVDMSQG 168 +ASG YPVL PI+ Q D + G ++ + T+ L S Q Sbjct: 121 TASG-YPVLGSNG-PIRFQQTDRDITISADGTVTVIEGLNNSTNSIRGTLRLVSFRQPQK 178 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 ++ E S + + + + +GF+E SN +++ EM +M+ +++ + + TL+ Sbjct: 179 LIK-EGSNLYAAGESNFAQPDTKSQIHQGFIERSNVSAVTEMSRMVQVSRAYTQMATLLQ 237 Query: 229 ENEKSMLEAIRNIA 242 + AI +A Sbjct: 238 QQSDLQRTAIEKLA 251 >gi|254437698|ref|ZP_05051192.1| flagellar basal-body rod protein FlgG [Octadecabacter antarcticus 307] gi|198253144|gb|EDY77458.1| flagellar basal-body rod protein FlgG [Octadecabacter antarcticus 307] Length = 257 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 110/263 (41%), Gaps = 32/263 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------- 57 ++ A + R+ +A+N+SN +TVGF++ +V F ++ + + S Sbjct: 1 MHVAKTGLNAQQTRMQVIANNLSNLNTVGFKSDRVNFESLLYQVSRAGGDQTSEGTALTS 60 Query: 58 --FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + +G ++ + G ++T D A++G +F + P G + TR+G F + Sbjct: 61 ALALGTGVRAVNTQKLYTQGGMVNTDNSFDLAIDGQGFFQVLMPDGRVGYTRNGSFSRSA 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVD 164 DG++ +ASG + I+IP + N+ + G +S + + + + L + Sbjct: 121 DGTMTTASGY-----VIQPEIRIPDEAVEVNISQDGIVSVRSSGQEVAQEVGQLSLATFA 175 Query: 165 MSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +G S P G + +G LE SN N + ++ +MI + Sbjct: 176 NPRGLQPIGESFVVETTASGAATVAAPQSQGLG-KLMQGALEASNVNVVQQLVEMIETQR 234 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + + I +++ M N+ Sbjct: 235 AYEVSSKAITSSDEMMRYISNNL 257 >gi|119947175|ref|YP_944855.1| flagellar basal-body rod protein FlgG [Psychromonas ingrahamii 37] gi|119865779|gb|ABM05256.1| flagellar basal-body rod protein FlgG [Psychromonas ingrahamii 37] Length = 261 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 109/260 (41%), Gaps = 32/260 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M ++ I A + +++ +++N++N +TVGF+ +V F ++ +I+ + Sbjct: 1 MNSALWISKTGMAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSIQKQPGASVDGQN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V GS +T ELD A+ G +F +E+ G + +R+G+F Sbjct: 61 KLPTGLQLGNGVRVVGTQKVYTQGSIQNTSQELDLAILGAGFFQIENSDGTIMFSRNGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + +G V+ G + + +PQ ++ G++S + + I + L Sbjct: 121 HLNAEGQFVNTQGLSLI-----PQVNVPQGATSVSIAIDGKVSAVIPGQTELEQIGEITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + + + S T D +G+ +K+G LE SN + EM MI Sbjct: 176 VTFMNPSGLMAKGGNLFSATESSGAANELTAGLDGAGI-IKQGALEGSNVQVVEEMVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + ++ ++ + Sbjct: 235 STQRAYEMSAKMVSAADEML 254 >gi|302037627|ref|YP_003797949.1| flagellar basal-body rod protein FlgF [Candidatus Nitrospira defluvii] gi|300605691|emb|CBK42024.1| Flagellar basal-body rod protein FlgF [Candidatus Nitrospira defluvii] Length = 255 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 32/263 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ +A E++L+ A+N++N +T GF+ + F + + +S Sbjct: 1 MNRAIYPILSGAVAQEKQLTVFANNLANVNTAGFKQDQQGFRGLFARASSTGTGVVSGGL 60 Query: 61 SGK------------------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTR 102 S + E G TG LD A++ D +F +++P G+ TR Sbjct: 61 SSAISTRPAGPSERVFAEVHGVRTAFEPGRIRITGNPLDVAIQSDGFFEVKTPDGVRYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 +G F + LV+ G +PV+ I++P + + +G I G I ++ + Sbjct: 121 NGIFSLDSQRRLVTNLG-HPVMGTKGE-IKVPPGN--IQINAEGAIQVDGTPIGSIKVVE 176 Query: 163 VD---MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 M Q F G P + P V+ G +E+SN NS+ EM +M+ + Sbjct: 177 FPENGMPQKFAEGLFVGGKPAVSTRP-------QVQSGHIEESNVNSLSEMVKMMQGMRS 229 Query: 220 FNSITTLIDENEKSMLEAIRNIA 242 + S LI ++ AI+++ Sbjct: 230 YESAQKLIQTMDRMTETAIQDLG 252 >gi|260886210|ref|ZP_05897473.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|330839794|ref|YP_004414374.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] gi|260863929|gb|EEX78429.1| flagellar basal-body rod protein FlgG [Selenomonas sputigena ATCC 35185] gi|329747558|gb|AEC00915.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] Length = 264 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 27/265 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND------ 51 M + + + R +A+N++N + G++ + +F+ ++ ND Sbjct: 1 MLRGLYVAASGMITETNRTDVIANNLANAASSGYKRDEAINQEFAPMLLKRINDNQDDAV 60 Query: 52 --------------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG 97 + + + GS +TG LD A+ G+ +FA+++P+G Sbjct: 61 TSFRGFRLEQGPPRVGNLGLGAYTAEIATDHVQGSMKTTGNMLDLAVSGEGYFAIQTPQG 120 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 + TRDG F +G+LV+A G+ VL+ + PI +P +G KGEI + I T Sbjct: 121 VRYTRDGSFYRQANGALVTARGQ-AVLNAQNRPIMLPDSA-NITIGAKGEIMDGQRRIDT 178 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + D + +++ ++ P P +++G LE+SN N EM +I+ Sbjct: 179 LQFVQFDDRRAVLKQGDNLYRPQQGAEPQAATGD--IQQGMLENSNVNIASEMVSLINNY 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 + + + + + + + + + Sbjct: 237 RIYEAGSRALVTQDSMTDKTVNEVG 261 >gi|319944134|ref|ZP_08018412.1| flagellar basal-body rod protein FlgF [Lautropia mirabilis ATCC 51599] gi|319742628|gb|EFV95037.1| flagellar basal-body rod protein FlgF [Lautropia mirabilis ATCC 51599] Length = 245 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 12/243 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + AL +R ++ N++N T GFR + V + ++ V Sbjct: 1 MDRMIYLSMTGAKALMERQDALSHNLANASTDGFRADLMTARAVPIREEGTATTRVFNVE 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD A+ + WFA+++ G TRDG V + G+L + G Sbjct: 61 TSTGF-DGKSGPIRQTGNPLDLAIRDNGWFAVQAADGSEAYTRDGGLVVDEQGNLRTRRG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 + + D PI +P V + G + QK + L DM++ +++ + Sbjct: 120 QTVLGD--GGPISVPAGA-DVQVADDGTVMVQVGRQKPSQAGKLKLVDPDMAE--LKKGD 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ V V +G +E SN N + M MI + ++F L+ E + Sbjct: 175 DGLMRMKEGGEAPVSDSVRVVQGAVEGSNVNVVESMVGMIEVQRQFEMQMKLLQTAESNE 234 Query: 235 LEA 237 A Sbjct: 235 QRA 237 >gi|170741836|ref|YP_001770491.1| flagellar basal body rod protein FlgG [Methylobacterium sp. 4-46] gi|168196110|gb|ACA18057.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] Length = 262 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 97/258 (37%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I A + L +A+N++N +T GF+ + +F++++ + Sbjct: 1 MRALAIAATGMNAQQLNLEVIANNVANLNTTGFKGARAEFTDLLYQAERQQGVPNQTGQE 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + G T LD A+ G +F + +P G + TR G F Sbjct: 61 AVPEGALLGLGVRAAAIRNLHRQGPLAQTSNNLDLAINGRGYFQVTNPNGEVNYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G LV+ G Y V I P + + G++ K +++ + + Sbjct: 121 NKSSTGQLVTLEG-YVVEPA----ILFPANTVDVVINQSGQVYAKVDGQATPQLLGQLSI 175 Query: 161 YSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIH 215 + G N P+ ++G T V++G+LE SN + + E+ +I Sbjct: 176 ANFANESGLEPLGNGLYRETAASGAPVTGVAGDTGFGKVQQGYLESSNVDPVKEITSLIT 235 Query: 216 LTQKFNSITTLIDENEKS 233 + F + +I ++ Sbjct: 236 AQRAFEMNSKVIQAADEM 253 >gi|114777905|ref|ZP_01452819.1| flagellar basal-body rod protein FlgG [Mariprofundus ferrooxydans PV-1] gi|114551692|gb|EAU54244.1| flagellar basal-body rod protein FlgG [Mariprofundus ferrooxydans PV-1] Length = 251 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 98/256 (38%), Gaps = 33/256 (12%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-------------- 57 A + +++N++N +T GF+ + F +++ + S Sbjct: 1 MAAQSLNVDVISNNIANVNTNGFKRGRANFQDLMYQQIKAPGAEASAAGTQLPTGIQVGL 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 V + GSF T LD ++G +F ++ G TR G F + G +V+ Sbjct: 61 GVRTASVDSIFSEGSFQQTNNPLDLTIQGRGFFQVQLANGETAYTRAGSFSLDATGQIVT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVR 171 +G D+ I IP + + + G +S V+ + + G + Sbjct: 121 QNG-----DVLQPGITIPADAQSIQIAQDGTVSVTQANATQTVLGQIQIADFLNPAGLAK 175 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + P + P E+ G ++ +G LE SN + + EM +I + + + Sbjct: 176 LGGNLFQPSNASGTAVIGNPTENGLG-SMTQGTLEMSNVSMVEEMVNLIAGQRAYEMNSK 234 Query: 226 LIDENEKSMLEAIRNI 241 I +++ ML+ N+ Sbjct: 235 AIQASDE-MLQTANNV 249 >gi|197104381|ref|YP_002129758.1| flagellar basal-body rod protein FlgG [Phenylobacterium zucineum HLK1] gi|196477801|gb|ACG77329.1| flagellar basal-body rod protein FlgG [Phenylobacterium zucineum HLK1] Length = 262 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 34/269 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + A + + +++N++N +TV F+ + +F +++ Sbjct: 1 MQALRTAATGMAAQQLNVEVISNNIANMNTVAFKRQRAEFQDLLYQTFEAAGVQSSDQGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V +G Y G+ T +LD A++G +F + P G TR G Sbjct: 61 IVPTGVQVGAGVKAGSVYRIATQGTLTRTENKLDMAIDGRGFFQVLLPSGETAYTRAGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 V D G LV+ G YP+ I IPQ + + G +++Q G+ ++ + L Sbjct: 121 SVNDQGQLVTQDG-YPIEPG----ITIPQDAVDVAISKSGQVQVTQAGQTAPTIVGQLEL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + +E + P P E+ G + +G+ E SN +++ E+ +I Sbjct: 176 ATFLNEGGLQAQGSNLFKETAASGPPTNGIPGENGVG-ELIQGYTEASNVDAVAEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + +I + +ML + + Sbjct: 235 VAQRAYEMNSKVISTAD-NMLATANQVKA 262 >gi|71906392|ref|YP_283979.1| hypothetical protein Daro_0753 [Dechloromonas aromatica RCB] gi|71846013|gb|AAZ45509.1| Protein of unknown function DUF1078 [Dechloromonas aromatica RCB] Length = 247 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + A+N++N T+GF+ + +F V ++ + +FV Sbjct: 1 MDRLIYTAMTGAKHVFMQQAGTANNLANASTIGFKAQEHRFRAV--PVQGEGMPTRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G + TG LD A++G W ++ P G TR G V G L + SG Sbjct: 59 DASVSDVMDEGPLMFTGRNLDVAVQGKGWIGVQLPDGSEAYTRAGSLDVDVTGLLQTKSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVR 171 YPV PI IP + + G +S I + L V+ + + Sbjct: 119 -YPVAGDGG-PINIPPDNT-IEIAPDGTVSVVPTFGTPNNANAIGRIKL--VNPPEADLV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ P + V + G LE SN N M +I L+++F L+ + Sbjct: 174 RGADGLFRLRNNQPAVADANVKLAAGTLEGSNVNVTDAMVNLISLSRQFEMQIKLLQTAD 233 Query: 232 KSMLEA 237 + A Sbjct: 234 TNAQRA 239 >gi|206603526|gb|EDZ40006.1| Putative flagellar basal body rod protein [Leptospirillum sp. Group II '5-way CG'] Length = 267 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 28/266 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------- 49 M+ + ++ A EQ + + +N++N +T GF+ +V F + + Sbjct: 1 MRQAEFALVSGAQAQEQLMDVLTNNLANVNTPGFKRDRVTFRTYLPHREWLHKTPSDQPG 60 Query: 50 -------------NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + + ++ GSF STG LD A++G+ +F + +PR Sbjct: 61 FRMTPWGEFPTPWGMAGKDVPHAGVDGIHVGYAQGSFRSTGNPLDIAIKGEGFFRILTPR 120 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEISQKGKVI 155 G +L+R+GRF + G LV+ G Y VL I++P+ V G + + +V+ Sbjct: 121 GEVLSRNGRFTLDRGGRLVTHEG-YGVLGEDGKNIRLPESVPGGIRVKADGTVLKGNRVM 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + + + + + G+ V + GF E SN N +EM +MI Sbjct: 180 GRLAVVVPENGTEHLAKVGDGLFMGDGKIAPVADPDV-LAGGF-ESSNVNGTFEMVRMIE 237 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + F + + + + +I Sbjct: 238 AMRSFETHLKALQTLNELTRRTVNDI 263 >gi|27381984|ref|NP_773513.1| flagellar basal body rod protein FlgG [Bradyrhizobium japonicum USDA 110] gi|27355154|dbj|BAC52138.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--------AIKNDID 53 S I A + + +A+N++N ++ ++ + +F+++ A N Sbjct: 1 MKSLAIAATGMNAQQTNIEVIANNIANINSTSYKRARAEFTDLFYQMDRMQGVANVNGSS 60 Query: 54 QKISFVASGKEYLSKE------VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 G S G+ TG D A+ G WF + P + TR G F Sbjct: 61 PIPEGANLGLGVKSAAIRKLHIQGALTQTGNPYDLAINGRGWFQVLGPNNEVQYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 + LV+ G +LD A I IPQ V + G++ + I + L Sbjct: 121 NTNANSQLVTTDGY--LLDPA---ITIPQGTVEVTVNQTGQVFAKLDTEVNPRQIGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + + P + G + + +LE SN + + E+ ++I Sbjct: 176 ANFANEAGLEPLGSNLYRETTASGTPVVGLPGDAGYG-KINQKYLEASNVDPVKEITELI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + + +I +++ Sbjct: 235 SAQRAYEMNAKVIQASDEM 253 >gi|254511992|ref|ZP_05124059.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium KLH11] gi|221535703|gb|EEE38691.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium KLH11] Length = 261 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 113/265 (42%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ T+++N++N +T G+ T + +F+++ Sbjct: 1 MRALKIAATGMTAQQMRVETISNNLANMNTTGYNTRRAEFADLHYQQVARAGAVSASDGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + E G +TG++LD A+EG + + P G TRDG Sbjct: 61 VLPTGIQLGLGVRPAAVTVQLEQGGLSATGSDLDVAIEGRGYLEVTLPNGQSAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G + I IP ++ GE+ + +G+++ + Sbjct: 121 KRSAEGLIVTSDGFAV-----APEITIPDDARSISINAAGEVYAYFDDTAEGQLLGEFTM 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S ++G + +E + P ED G T+++G+LEDS+ +++ E+ ++I Sbjct: 176 ASFSNAKGLEAVGSNLFKETEASGAPVVGRPGEDGLG-TLRQGYLEDSSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAVDQMMGATTQ 259 >gi|92116936|ref|YP_576665.1| flagellar basal body rod protein FlgG [Nitrobacter hamburgensis X14] gi|91799830|gb|ABE62205.1| Flagellar basal-body rod FlgG [Nitrobacter hamburgensis X14] Length = 262 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T G++ + F +++ + + S Sbjct: 1 MRALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + G+ TG +LD A+ G+ +F ++ P G TRDG F Sbjct: 61 ILPVGIDLGGGVKTVGTPRLMSQGTLSQTGNDLDIAIRGEGFFKIQMPDGTYQYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ + G +V+A G PV I IPQ + +G++S V+ +GL Sbjct: 121 QMDNQGRIVNAQGN-PVQPT----ITIPQNSAGITINAQGQVSVTLPGQTTPTVLGQIGL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ + P +D +++ LE +N + E+ +I Sbjct: 176 TRFVNKAGLQPVGDNNFTETPASGPPQDGIANIDGYGDMQQSSLEQANVEVVSEISDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + +I ++ + A Sbjct: 236 AQRAYEMNAKVISAADQMLQSA 257 >gi|126730134|ref|ZP_01745946.1| flagellar basal-body rod protein FlgG [Sagittula stellata E-37] gi|126709514|gb|EBA08568.1| flagellar basal-body rod protein FlgG [Sagittula stellata E-37] Length = 261 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ +++N+SN T G+ + +F+++ Sbjct: 1 MRALKIAATGMSAQQMRVEVISNNLSNMSTTGYNARRAEFADLHYQQMARAGTVNASNGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + G+ +TG +LD A+EG+ + + P G TRDG Sbjct: 61 VLPTGIQLGLGVRPAAVSVQLSQGALSATGGDLDVAIEGNGYLEVTLPSGQAAYTRDGGL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K T +G +V++ G +PV I IP ++ GE+ + +++ L Sbjct: 121 KRTGEGLIVTSDG-HPVAPE----ITIPDDARRISINADGEVYAYFAGQAQAQLLGQFTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++G + E P I TP +D G T+++G+LEDS+ +++ E+ +I Sbjct: 176 AGFANAKGLEAIGSNLFVETEASGPAIQSTPGQDGLG-TLRQGYLEDSSVDAVKEITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + + Sbjct: 235 EAQRGYELNSKVISAADQMLGATAQ 259 >gi|118589981|ref|ZP_01547385.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] gi|118437478|gb|EAV44115.1| Flagellar basal-body rod FlgG [Stappia aggregata IAM 12614] Length = 262 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 104/267 (38%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + I A + + VA+N++N +T F+ + +FS+++ + Sbjct: 1 MKALAIAATGMSAQQMNVEVVANNIANMNTTSFKRSQAEFSDLLYQAERLQGVPNRGGED 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + Q V + GS +TG + D AL+G WF + P + TR G F Sbjct: 61 PVPEGAQLGLGVRTAGIRKLHAQGSLTNTGNQFDVALDGRGWFEITGPDDETLFTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 DG LV+ G YPV I +PQ+ V E G++ K + + + L Sbjct: 121 NKNADGRLVTIDG-YPVEPA----IIVPQETIEVVVNESGQVFAKVDGEMAPRELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + RE + + GV +++G+LE SN + + E+ +I Sbjct: 176 SNFANDVGLEPVGGNLFRETEASGSPVSGVAGDPGFGV-IRQGYLESSNVDPVKEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ++ I Sbjct: 235 SAQRGYEMNSKVMKAADEMAGTVTNGI 261 >gi|27380939|ref|NP_772468.1| flagellar basal body rod protein FlgG [Bradyrhizobium japonicum USDA 110] gi|27354105|dbj|BAC51093.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQ 54 + + A E + +++N++N T GF+ F ++ VGA +D Sbjct: 1 MQALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYEHVRRVGAQASDQGT 60 Query: 55 KI-------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + V + S G+ TG +LD A+ G+ +F + P G TRDG F Sbjct: 61 IVPVGVDIGGGVKTVGTPRSMTQGTLSQTGNDLDLAISGEGFFKILMPDGTFQYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ + G +V+A G PV I IP V E+G++S V +GL Sbjct: 121 QMDNQGRVVTAQGN-PVQPT----ITIPNNASGLTVNEQGQVSVTLPGSSTSAVQGQLGL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 G N+ + P +D + T + +G LE +N + + EM +I Sbjct: 176 TRFINKAGLQPVGNNQFTETPSSGPPQDGTANTEGYGKITQGSLEQANVDVVSEMSDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + +I ++ M Sbjct: 236 AQRAYEMNAKVISAADQMMQST 257 >gi|188587424|ref|YP_001918969.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352111|gb|ACB86381.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 280 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 40/279 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + L ++ ++NM+N +T G + K +FS ++ + ND Sbjct: 1 MLRGLYTSSSGMLTQQRVQEVKSNNMANLNTTGHKRDMSVKSEFSNMLISRINDPENIGP 60 Query: 52 -----------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL 100 I + + V + G TG LD LEGD +F + P G Sbjct: 61 PQSPQVDNRPYIGELGTGVLLDETVKDFSQGPLKETGNTLDLGLEGDGFFTVNGPDGEEY 120 Query: 101 -TRDGRFKVT-----DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---- 150 TR G ++ ++ +LV+ G PVL + IQ+ ++ V E G I Q Sbjct: 121 FTRSGALTLSYDETSEEATLVTLQGD-PVLGEEGI-IQL-SGEKDITVTENGAIYQGQDD 177 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-------LEDLSGVTVKRGFLEDSN 203 + ++I + L + + QG R ++ + ED ++V +G +E SN Sbjct: 178 EAELIDNLALVNFENPQGLARYGDNLLEQTEESGAPQELDLDGEDFGILSVHQGKIESSN 237 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 NS+ EM MI+ + + S I ++ ++ A+ +I Sbjct: 238 VNSVDEMTGMINALRAYESNQRAIQGHDDTLERAVNDIG 276 >gi|88704304|ref|ZP_01102018.1| Flagellar basal-body rod protein flgG [Congregibacter litoralis KT71] gi|88701355|gb|EAQ98460.1| Flagellar basal-body rod protein flgG [Congregibacter litoralis KT71] Length = 243 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 32/249 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---------VASGKEYLS-- 67 +ST+A+N++N T GF+ + F +++ + + S + +G ++ Sbjct: 1 MSTIANNLANVGTTGFKRGRAIFEDLIYQNVRQVGSQSSQDTLLPSGLQIGTGTRVVATE 60 Query: 68 --KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ T LD A++G +F + P G TRDG F++ D G +V+++G Sbjct: 61 RLFTQGNLTKTDGALDIAIQGRGFFEILLPDGNQAFTRDGSFQINDQGIVVTSAGY---- 116 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGFVRRENSGI- 177 PI +PQ + G +S + I + L G R + Sbjct: 117 -QLQPPITVPQDALSVTIAADGTVSVQQPGTAAATQIGLVQLTDFINPAGLQARGENLFL 175 Query: 178 -----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 P P + G T+ +G++E SN N + E+ MI + + + I ++ Sbjct: 176 ESGASGAPQPGNPGLNGLG-TLSQGYVESSNVNVVEELVNMIETQRAYEMNSRAISTADQ 234 Query: 233 SMLEAIRNI 241 + N+ Sbjct: 235 MLQYISNNL 243 >gi|323139654|ref|ZP_08074696.1| flagellar basal-body rod protein FlgG [Methylocystis sp. ATCC 49242] gi|322395086|gb|EFX97645.1| flagellar basal-body rod protein FlgG [Methylocystis sp. ATCC 49242] Length = 262 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 96/259 (37%), Gaps = 33/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + I A +Q + +A N++N +T GF+ + +F++++ Sbjct: 1 MRALAIAATGMSAQQQNIEVIAHNIANINTTGFKRSRAEFTDLLYQTDRLQGVSNRGRDA 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V + ++ G +TG D ++ G WF + + TR G F Sbjct: 61 TVPQGAQFGLGVRAAAVRSLQQQGPLTNTGNMYDLSMNGRGWFQILGSDNETLYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++G LV+ G + I IP +V + G +S + + I + + Sbjct: 121 STNNNGQLVTVDGYLL-----TPTITIPNNTLNVSVSQSGIVSAIVAGQTQPQQIGQLTV 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + I P + GV + +G+LE SN + + E+ +I Sbjct: 176 ANFANESGLEALGGNLFRETYASGQPIVGIPGDPGFGV-INQGYLESSNVDPVKELVSLI 234 Query: 215 HLTQKFNSITTLIDENEKS 233 + F + +I ++ Sbjct: 235 SAQRAFELNSKVIQAADEM 253 >gi|23099019|ref|NP_692485.1| flagellar basal body rod protein FlgG [Oceanobacillus iheyensis HTE831] gi|22777247|dbj|BAC13520.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831] Length = 285 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 110/282 (39%), Gaps = 43/282 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---IS 57 M S G++ + +L + +N++N +TVG++ V F +++ + Sbjct: 1 MLRSMYSGISGMKNSQTKLDVIGNNIANVNTVGYKKSMVNFQDMMSQTTSGAQGSTANRG 60 Query: 58 FVASGKEYLSKEVGSF---------ISTGTELDFALEGDAWFAL---------------E 93 V + + L +G+ T LDFA+EGD F L Sbjct: 61 GVNASQVGLGSTIGAISNIHTQGFQQVTNNPLDFAIEGDGMFVLVEGVDADGEGGTNIDL 120 Query: 94 SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASV----PIQIPQKDEIFNVGEKGEI- 148 +R G F + D+G++V++ G Y V + I IP+ + F+V G + Sbjct: 121 DNVNTAYSRAGNFYLDDNGNIVNSQGLYLVGFVGDPAQESTINIPESAQSFSVQSNGTVN 180 Query: 149 ----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP-------TPLEDLSGVTVKRG 197 + +V + L S G + N+ + TP D G +V G Sbjct: 181 YIDANGDTQVAGQVALASFSNPSGLQKAGNNLYLDSPNAGLAEQLYTPESDDLGSSVVSG 240 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E +MI + F + T +I +++ + E + Sbjct: 241 ALEMSNVDLSEEFTEMITAQRSFQANTRIITTSDEILQELVN 282 >gi|83589631|ref|YP_429640.1| hypothetical protein Moth_0779 [Moorella thermoacetica ATCC 39073] gi|83572545|gb|ABC19097.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 275 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 100/273 (36%), Gaps = 35/273 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + R+ + DN++N +TVGF+ V F +V Sbjct: 1 MMRSLYSGVSGLRTHQTRMDVIGDNIANVNTVGFKRSAVTFKDVFYQTLRGGSAGDSGGT 60 Query: 49 ---KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 + Q V G + G+ STG D ++GD +F + TR G Sbjct: 61 GMGGTNPQQIGLGVTLGSIDVVHTQGAAASTGNGTDLMIQGDGFFRVSDGTNTYYTRAGA 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKD------EIFNVGEKGEI-----SQKGKV 154 F ++G LV+ G VL PIQI + + +++ + G + + Sbjct: 121 FHFDNEGFLVTTDG-LKVLGTDDNPIQIADMNDPTTMPQSYSIDKMGVVHYVDSTGAALQ 179 Query: 155 IATMGLYSVDMS-------QGFVRRENSGISPNIPPTPLED-LSGVTVKRGFLEDSNANS 206 T+ + Q R S P TP + L+ T+ LE SN + Sbjct: 180 AGTISIAKFSNPSGLEKIGQNLYRATTSSGDPGSELTPGQGSLANTTIIPSALEMSNVDL 239 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E MI + F + I +++ + E + Sbjct: 240 AQEFTDMIITERGFQANARTITTSDQMLQELVN 272 >gi|126738578|ref|ZP_01754283.1| flagellar basal-body rod protein FlgG [Roseobacter sp. SK209-2-6] gi|126720377|gb|EBA17083.1| flagellar basal-body rod protein FlgG [Roseobacter sp. SK209-2-6] Length = 261 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 111/265 (41%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ----KIS 57 + I A + R+ T+++N++N +T + + +F+++ + + Sbjct: 1 MRALKIAATGMSAQQLRVETISNNLANMNTTAYNARRAEFADLHYQQVSRAGTINASDGT 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G + + G+ T ++LD A+EG + + P G TRDG Sbjct: 61 VLPTGVQVGLGVRPAAISVHLNQGALKQTNSDLDVAIEGKGYLEVTLPSGQSAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G YPV S I IP ++ +GE+ S G+++ L Sbjct: 121 KRSAEGLIVTSDG-YPV----SPEITIPNDALSISINPEGEVYAYFDESTAGQLLGQFNL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G ++ T ED G ++++G+LE S+ +S+ E+ ++I Sbjct: 176 AGFTNPKGLEALGSNLFIATEASGAANTSTAGEDGLG-SLRQGYLEGSSVDSVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAVDQMMGATTQ 259 >gi|168186142|ref|ZP_02620777.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] gi|169295678|gb|EDS77811.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] Length = 259 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 109/261 (41%), Gaps = 23/261 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGA---------- 47 M S ++ + E + +++N++N TVG++ + F +V+ Sbjct: 1 MIRSIYTAVSGLINQEAQQDVISNNLANATTVGYKKDDLVGKSFKDVMMHNYDKVVRGKH 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 +KNDI + Y + G+ ST + DFAL+G +F + TRDG F Sbjct: 61 VKNDIGMLSMGCKLDQTYTNFTQGALQSTDKKTDFALQGKGFFTVSRGGRNFYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVL----DMASVPIQIPQKDEI--FNVGEKGEISQKGKVIATMGLY 161 V G LV+++G + A+ PI + Q + + + GE+ + + + Sbjct: 121 VDRGGYLVNSTGDKVIGKNLRTGATEPINVMQGGKPSKISCNDSGEMFVGNDLAYKVQVV 180 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + + + ++ + P + VK+G+LE SN N M + M+ + F Sbjct: 181 DFNNYEALSKEGDNLYTGGNPNV----IENTMVKQGYLEKSNINVMEAVSDMMMSMRNFE 236 Query: 222 SITTLIDENEKSMLEAIRNIA 242 S L+ ++++ + + + Sbjct: 237 SNQKLVQSLDETLGKTVNEVG 257 >gi|320354341|ref|YP_004195680.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122843|gb|ADW18389.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 244 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 7/246 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFV 59 M + L+ +A EQ +S VA N++N T GF+ ++ F+ ++ GA + + I+F Sbjct: 1 MGSGKYSALSGAVAREQAMSNVAANLANVSTTGFKKDRISFAAILRGAQQASDARGINFA 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 K + G T LD A++G +F + TR GR + D+G + + G Sbjct: 61 RIRKIGVDFSQGGMQPTDRPLDVAIDGPGFFKVRKGGETFYTRSGRLMLDDNGMVKTEDG 120 Query: 120 KYPVLDMASVPIQIPQK-DEIFNVGEKGEISQKGKVIA-TMGLYSVDMSQGFVRRENSGI 177 VL + P+QI + + E G+IS G + + +++V + N+ Sbjct: 121 -LNVLGAGNEPLQIDTALGKDIVIAESGDISVAGTLTGNRIQVFAVPDQDKLKKAGNALY 179 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + + L+ V +G LE SN N + EM M+ + F + ++ K + E Sbjct: 180 ALEEGGD--QPLADYRVLQGSLETSNVNMIEEMTAMVDTQRTFEAHLKALESYSK-LGEK 236 Query: 238 IRNIAS 243 + S Sbjct: 237 QDELGS 242 >gi|134095095|ref|YP_001100170.1| basal-body rod protein [Herminiimonas arsenicoxydans] Length = 242 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 97/247 (39%), Gaps = 32/247 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---------VASGKEYLSKE 69 + +++N++N T GF+ + F +++ S + +G ++ E Sbjct: 1 MDVISNNLANVSTTGFKRSRAVFEDLLYQTIRQPGAASSQQTELPSGLQLGTGVRPVATE 60 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ T + A+EGD +F + P G TRDG F+ + G +V++SG Sbjct: 61 RIHTQGNLQLTSNAKNLAIEGDGFFQVLMPDGTTAYTRDGSFQTDNQGQMVTSSGF---- 116 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGFVRRENSGIS 178 I IP+ + G +S I + L + G + R + Sbjct: 117 -PIQPAITIPENATSITISRDGIVSVTVSGTTAATEIGALQLATFINPAGLMSRGENLYV 175 Query: 179 PNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 TP + +G+ +K+ ++E SN N + E+ MI + + + I +++ Sbjct: 176 ETTASGTANTNTPGSNGAGL-LKQNYVETSNVNVVEELVSMIQTQRAYEINSKAITTSDQ 234 Query: 233 SMLEAIR 239 + + Sbjct: 235 MLQRLTQ 241 >gi|89092138|ref|ZP_01165093.1| flagellar basal-body rod protein FlgG [Oceanospirillum sp. MED92] gi|89083873|gb|EAR63090.1| flagellar basal-body rod protein FlgG [Oceanospirillum sp. MED92] Length = 261 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 100/267 (37%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + N+ A + L +++N++N TVGF+ V F +++ I+ + + Sbjct: 1 MHGALNVAKTGMTAQDTNLKVISNNLANVSTVGFKKDAVVFEDLMYQIRRQPGAQTAEEA 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + G T D A+ G + + P G TR+G+ Sbjct: 61 QLPSGLQVGLGVRTVGTQKLFGTGEIEITEEAFDVAINGRGFLQVTLPNGDTAYTRNGQL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + D LV+ G + I +P + F++ G + I + + Sbjct: 121 HLNADNELVTPEGY-----QINPAITLPGEVVNFSISTDGVVEVVTAGNNTPTQIGQLQM 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 QG + +E I P E+ +G+ + +G LE SN NS+ E+ MI Sbjct: 176 ADFVNPQGLQSLGQNLYQETGASGAPIISNPGENGTGI-LVQGALEGSNVNSVQELVDMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I ++ + + + Sbjct: 235 TTQRAYEMNSKVISTADEMLSYVSQQL 261 >gi|134300226|ref|YP_001113722.1| hypothetical protein Dred_2387 [Desulfotomaculum reducens MI-1] gi|134052926|gb|ABO50897.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 257 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 114/259 (44%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV---------GAI 48 M I + + + +L+ V +N+SN T G++ + +F+E + G Sbjct: 1 MLRGLYITMNSLNVQQAKLNNVTNNLSNLSTTGYKKNNMVDSQFAESLQLALENHGPGGK 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 + I + I + ++ G TG D ALEG+ +F +E G LTRDG F Sbjct: 61 RQPIGKGILGNMITQVHIDYGQGPLTETGKLTDMALEGNGYFVVEDENGEQFLTRDGSFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSV 163 V ++G+L++ G + VL PI + +K E F + E G I + + I + + V Sbjct: 121 VNEEGALLTGDG-FRVLGEGG-PIIL-EKPEDFTLKEDGTIMVGQGTEAEEIDKLQIVEV 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + + P E TV +G+LE SN + + EM +I + + + S Sbjct: 178 SEPALLKKTDGNYF--QDPEGVAEAAVSTTVTQGWLEKSNVDPVQEMINIIPVARIYESS 235 Query: 224 TTLIDENEKSMLEAIRNIA 242 LI ++ + +AI + Sbjct: 236 QKLIQIQDELLDKAINQVG 254 >gi|209521590|ref|ZP_03270288.1| flagellar basal-body rod protein FlgF [Burkholderia sp. H160] gi|209497973|gb|EDZ98130.1| flagellar basal-body rod protein FlgF [Burkholderia sp. H160] Length = 252 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 15/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++N T GFR + V + + D Sbjct: 1 MDRLIYTAMSGSAQALEQQAIVANNLANASTTGFRAQLETYRAVPMSFGDGSTINDDTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV S G TG LD A++G W ++++ G TR G + ++G LV Sbjct: 61 TFVLSSTPGADYTPGPIQQTGNPLDVAIQGPGWLSVQTADGNEAYTRAGNLHIDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+ VL P+ +P + +G+ G +S V+ L V+ Sbjct: 121 NAT-NQVVLGNGG-PVSVPPGAQ-ITIGKDGTVSALTPGDPPTAVVTVDQLKLVNPDPQT 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P + VT+ LE SN N + M MI ++F T L++ Sbjct: 178 LTRSDDGLFRTADGNPADADPTVTLAPASLEGSNVNPVNAMVSMITNARQFQMQTQLLEN 237 Query: 230 NEKSMLEAIRNI 241 +K+ ++ + Sbjct: 238 ADKN-DQSANQL 248 >gi|297182937|gb|ADI19086.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0070_15B21] Length = 258 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 21/243 (8%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------------I 56 LE+++ TVA+N++N TVGF+ + F EV+ ++ + Q Sbjct: 14 LEKKIETVANNLANASTVGFKEDQPSFREVLSTVQRVVPQSDEENFLSHEYLDQYVGMDK 73 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S V + + G F TG ELD ALE + +F++ +P+G TR G FK+ G +V+ Sbjct: 74 SAVMVDEIGKNFTTGRFRDTGNELDLALENEGFFSISTPQGERFTRAGNFKLDSQGRMVT 133 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G +P+L PIQI + + V E G+++ +G V+ + + N Sbjct: 134 QDG-FPLLGKKG-PIQI-KGNGPIQVDENGQVAVEGTVLDQLKTVRFRNQDQLQKLGNHF 190 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 +P + V++G LE SN N++ EM +MI T+ + + I + + Sbjct: 191 YAPIRSDDVPIPSREIVVRQGILEQSNVNTVLEMSRMITATRSYEMVQKAITNLDSLDEK 250 Query: 237 AIR 239 AI Sbjct: 251 AIT 253 >gi|114799186|ref|YP_758987.1| flagellar basal body rod protein FlgG [Hyphomonas neptunium ATCC 15444] gi|114739360|gb|ABI77485.1| flagellar basal-body rod protein FlgG [Hyphomonas neptunium ATCC 15444] Length = 261 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 106/259 (40%), Gaps = 31/259 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 S I + A + R+ +++N++N T +R +FS+++ S V + Sbjct: 1 MKSLQIAASGMAAQQMRVEVISNNIANMSTTAYRPRTAEFSDLMYQQYLTPGTITSQVGT 60 Query: 62 --------------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + G+ T ELD A++G+ + + P G TRDG+ Sbjct: 61 VVPSGIQLGSGVRPTTVSMDLTQGTLRETQAELDIAIDGNGFLEVTLPSGEPAFTRDGKL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + DG +V++ G +P+ D I IP+ ++ GE+ +G+ I ++ L Sbjct: 121 SRSPDGEIVTSDG-FPLADG----IVIPEDARRISISRDGEVVAYFDNETEGQAIGSISL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 +G ++ P L T +++G++EDS + + E+ +I Sbjct: 176 VRFVNEKGLEAMGDNMFRETEASGPANRLIPGTEGMGFLRQGYIEDSAVDVVKEIADLIE 235 Query: 216 LTQKFNSITTLIDENEKSM 234 + + + +I +++ + Sbjct: 236 AQRGYELNSKVITASDEML 254 >gi|330830302|ref|YP_004393254.1| flagellar basal-body rod protein FlgF [Aeromonas veronii B565] gi|328805438|gb|AEB50637.1| Flagellar basal-body rod protein FlgF [Aeromonas veronii B565] Length = 248 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 10/240 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ +N++N +T GF++ + + + A + ++ F Sbjct: 1 MDHLLYIAMSGAKETMNSLAVRGNNLANANTTGFKSD-FEQARSMQAFGEGLPSRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + + + + G ++TG +LD A++G W A++ P G TR G +V G+L +++G Sbjct: 59 AERPGQNLQHGMLMTTGRDLDVAVDGPGWIAVQDPKGGEAYTRMGNLQVNATGNLQTSTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT------MGLYSVDMSQGFVRRE 173 V+D PI +P E + G IS + + A + V+ + V + Sbjct: 119 -LNVVDDGGQPIVLPMPMEKLEINRDGTISGRPEGAAANLPEDFQRIKLVNPAADAVEKG 177 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ + V + G LE SN N + EM +I L ++F + ++ E++ Sbjct: 178 QDGLFRRKDGQNEPASANVGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEEN 237 >gi|117619148|ref|YP_857342.1| flagellar basal-body rod protein FlgF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560555|gb|ABK37503.1| flagellar basal-body rod protein FlgF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 248 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 108/240 (45%), Gaps = 10/240 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ ++N++N +T GF++ + + + A + ++ F Sbjct: 1 MDHLLYIAMSGAKESMNSLAVRSNNLANANTTGFKSD-FEQARSMQAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + + + + G ++TG +LD A++G W A++ P G TR G +++ G+L +++G Sbjct: 59 AERPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQDPKGGEAYTRMGNLQLSATGNLQTSTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT------MGLYSVDMSQGFVRRE 173 V+D PI +P E + G IS + + A + V+ + V + Sbjct: 119 -LNVVDDGGQPIVLPLPMEKIEINRDGTISGRPEGAAANLPENFQRIKLVNPAVDAVEKG 177 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ + V + G LE SN N + EM +I L ++F + ++ E++ Sbjct: 178 QDGLFRRKDGQNEAASATVGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEEN 237 >gi|296282277|ref|ZP_06860275.1| flagellar basal body rod protein FlgG [Citromicrobium bathyomarinum JL354] Length = 262 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 30/264 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---- 58 ++ + A + R+ +A+N++N T GF+ + F+ + QK S Sbjct: 4 SALQVARTGLEAQDARMRVIANNLANVGTTGFKRDRANFATLAYQDARVAGQKSSGETAY 63 Query: 59 -----VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 + +G S G+ +T D AL+GD +F + P G TR G F Sbjct: 64 ATGLNLGTGVAVQSTSQIMTAGTLDTTNNAFDLALDGDGFFQIAMPGGRTGYTRAGNFTR 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYS 162 + +G LV+ G I +P+ + G +S + + + + Sbjct: 124 SAEGMLVTQQGFAV-----QPEITVPEGASAIAIAPDGTVSATINGESEPTELGQIQIAR 178 Query: 163 VDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 G ++ ++ E + +++G LE SN N + E+ MI Sbjct: 179 FTNPSGLQAIGDNFLAETAASGAAELGIAGEGGRGQIRQGMLEGSNVNIVEELVAMIEAQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ++ + A + + Sbjct: 239 RAYEISSKMVSAVDEMLRNANQTL 262 >gi|332994161|gb|AEF04216.1| flagellar basal-body rod protein FlgF [Alteromonas sp. SN2] Length = 247 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 15/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLST--VADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 M I + A + L T A+N++N T GFR +++ + + A + ++ F Sbjct: 1 MDKLLYIAASG--ASQDLLGTGLRANNLANAQTTGFRA-QLEQARSMPAYGEGLPSRV-F 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + + E G I TG +LD A++GD WFA++ G +RDG FK+ DDG L Sbjct: 57 SMTESPSNNYESGPMIQTGRDLDVAIQGDGWFAVQDDNGQEAYSRDGNFKLGDDGILTDV 116 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM----GLYSVDMSQGFVR 171 PVL PI +P + ++G G +S Q G + L V + + Sbjct: 117 H-NRPVLGDNG-PIFLPVPLDNLDIGMDGTLSMRQLGAPENVIEDVGRLKLVKPNYADME 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ T +GV V G LE SN N++ EM MI L + + ++ + + Sbjct: 175 RGTDGLFRMEDGTVAPASAGVKVMSGMLEGSNVNAVDEMVNMISLQRHYELQVKMMKQAD 234 Query: 232 K 232 + Sbjct: 235 E 235 >gi|262173356|ref|ZP_06041033.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] gi|261890714|gb|EEY36701.1| flagellar basal-body rod protein FlgG [Vibrio mimicus MB-451] Length = 250 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 32/249 (12%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-------------SF 58 A + +++ +++N++N +T GF+ +V F ++ I+ ++ S Sbjct: 1 MAAQDTKMTAISNNLANVNTAGFKRDRVVFEDLFYNIQRQPGAQVDQVNELPTGVQLGSG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 V G+ +T ELD A+ G +F +E+ G I+ TR+G+F V +G +V++ Sbjct: 61 VRVVGTQKVFTQGNAQNTAQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNS 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGF-- 169 G IQIP ++G G +S + + + L G Sbjct: 121 QGL-----PLEPQIQIPDNVVSLSIGVDGTVSATTAGDPAPQQLGQITLAKFINPAGLEA 175 Query: 170 ----VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + RE +D +G ++K+G LE SN + EM MI + + Sbjct: 176 VGGNLFRETDASGLAEELVAGQDGTG-SIKQGALEGSNVQVVEEMVDMITTQRAYEMNAK 234 Query: 226 LIDENEKSM 234 ++ + + Sbjct: 235 VVSATDDML 243 >gi|254462012|ref|ZP_05075428.1| flagellar basal-body rod protein FlgG [Rhodobacterales bacterium HTCC2083] gi|206678601|gb|EDZ43088.1| flagellar basal-body rod protein FlgG [Rhodobacteraceae bacterium HTCC2083] Length = 261 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 112/265 (42%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ +++N++N T G+ T + +F+++ + Sbjct: 1 MRALKIAATGMSAQQMRVEVISNNLANMSTTGYNTRRAEFADLHYQQMSRAGTINASDGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V + GS +T ++LD A++G + + P G TRDG Sbjct: 61 VLPTGVQLGLGVRPSSVSVYLAQGSLSATNSDLDVAIDGQGYLKVTMPSGASAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K +G +V+ G YP++ I IP + ++ GE+ + + +++ L Sbjct: 121 KRNAEGLIVTNDG-YPIVPE----IVIPPEARSVSINGDGEVFAYFNETAQAQLLGQFTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++G + E P+ TP D G T+++G+LEDS+ +++ E+ ++I Sbjct: 176 AGFTNAKGLEAIGSNLFMETEASGPSQVTTPGTDGLG-TLRQGYLEDSSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ + A + Sbjct: 235 EAQRGYELNAKVITAADQMLGAATQ 259 >gi|119775449|ref|YP_928189.1| flagellar basal body rod protein FlgF [Shewanella amazonensis SB2B] gi|119767949|gb|ABM00520.1| flagellar basal-body rod protein FlgF [Shewanella amazonensis SB2B] Length = 247 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ LS A+N++N +T GF+ ++ S + A + ++ F Sbjct: 1 MDKFLYIAMSGAKQNLNSLSIRANNLANANTDGFKAD-LEQSRSMQAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + S G ST +LD A++GD W A+E G TR G K + G L ++ G Sbjct: 59 TENPQASFRHGPINSTARDLDVAVKGDGWIAVEDADGNEAYTRAGSLKFDETGLLTNSQG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + PV+ A PI +P + + + G I+ + + +A + L + + Sbjct: 119 R-PVMGDAG-PIVLPLPIDKVEIAQDGTITVRPQGATAEVVEEVARIKLVNPGN--QNLM 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R + G+ + T V ++ +E SN N + EM +I + ++F ++ E Sbjct: 175 RGDDGLFRMMNGTTAPQDETVALESRAVEGSNVNPVEEMVALIDIQRQFELQVKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|134300225|ref|YP_001113721.1| hypothetical protein Dred_2386 [Desulfotomaculum reducens MI-1] gi|134052925|gb|ABO50896.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 266 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 111/269 (41%), Gaps = 34/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKND 51 + + + G + A + +L T+ +N++N +T F+ + F E+V A + Sbjct: 2 IIKTLSSGASGMRAHQLKLDTIGNNIANINTTAFKKNRTDFGEIVRQAIGEDGIPAANDP 61 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG----IILTRDGRF- 106 + S V + G I TG +LD A+EG +F + G TRDG F Sbjct: 62 RPEGGSGVRIVSLARVIDQGDLIQTGRDLDLAIEGQGFFKVTPATGDDDIEYYTRDGSFY 121 Query: 107 --KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATM 158 + D+ LV++SG V D + + ++V EKG + K + + + Sbjct: 122 ITTIDDETVLVNSSGYKLVWDGELDA----ETYKAYSVDEKGTVWGQRIEDGKTEEVGNI 177 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 L++ G V + ++ P ED G ++ G+LE SN + EM Sbjct: 178 ELFTFPAPSGLVSKGSNLYMATEASGEETSGVPGEDGIG-SIYSGYLERSNVDLATEMIG 236 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + + I ++ M + N+ Sbjct: 237 MIEAQRAYAANSRTIQTADE-MWDRANNL 264 >gi|83646788|ref|YP_435223.1| flagellar basal body rod protein [Hahella chejuensis KCTC 2396] gi|83634831|gb|ABC30798.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 254 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 106/252 (42%), Gaps = 22/252 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKIS 57 M + + A ++++ T+++NM+N +TV ++ +V F ++V A + I Sbjct: 1 MIDALYVAETGLQAGQKQIETISNNMANLNTVAYKKSRVAFGDLVSRQPAASAAEGKGIG 60 Query: 58 FVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 V G + + + G +T +LD A+ GD +F + G TR+G K+ +DG Sbjct: 61 SVGMGTKVAEVSMQFDSGDLKATENQLDLAIRGDGFFEVLLENGEYGYTRNGALKIDEDG 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQG 168 L + +G S IQIP + G I + + + L Q Sbjct: 121 YLSTLTGLRL-----SDQIQIPPDASKMQISTDGVVKVLIGEDVLEVGEIQLAKFVNDQA 175 Query: 169 FVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 P PL +GV +++GFLE SN + + E+ +++ + + + Sbjct: 176 LESAGQGLYIPADDAGAPLYSQAGVNGLGMIQQGFLESSNVDLVKELVELVTAQRGYQAN 235 Query: 224 TTLIDENEKSML 235 + +I ++ M Sbjct: 236 SHVIRAADEIMQ 247 >gi|238923133|ref|YP_002936646.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] gi|238874805|gb|ACR74512.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] Length = 272 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 33/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M + A + + T+A+N+SN +T GF+ + +F ++ D Sbjct: 1 MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60 Query: 53 DQKISFVASGKEYLSK----EVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFK 107 + V G + G ST DFALEGD +FA+ + TR+G F Sbjct: 61 KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120 Query: 108 VTDDGS----LVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEI---SQKGKVIA-- 156 + G+ L + G PV+D I +P E + GE G + + +G I Sbjct: 121 WSQYGNGQTILTDSQGN-PVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLN 179 Query: 157 -TMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKR-----GFLEDSNANSMYE 209 + +Y + G ++ S ++ P+ +++ +K G+LE SN E Sbjct: 180 QRIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEIANPALKSSKVVTGYLEGSNVQVADE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M +I + + + I + SMLE N+ Sbjct: 240 MVNLIVAQRAYELNSKAITTAD-SMLETANNL 270 >gi|160878402|ref|YP_001557370.1| hypothetical protein Cphy_0244 [Clostridium phytofermentans ISDg] gi|160427068|gb|ABX40631.1| protein of unknown function DUF1078 domain protein [Clostridium phytofermentans ISDg] Length = 271 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 109/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------------I 48 M + G + ++ + L T+++N+SN +T G++ +FS ++ + + Sbjct: 1 MMRALWTGASGMISQQTSLDTISNNLSNINTAGYKKENAQFSSLLYSKIQSKVTDSEGKV 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 K I Q S V S G+ + + D A+ G+ F++ G TR+G F Sbjct: 61 KPVIGQVGSGVRVTGIVSSFTQGTLQESNNDWDLAISGNGLFSVRDSDGNTAYTRNGSFH 120 Query: 108 --VTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEI-SQKGKVIA-----T 157 + +G ++++ YPVL+ P+ + E G + IA Sbjct: 121 IAIGAEGVTLASADGYPVLNTKGQPVVFNNNWDISKVTMDEYGNLMYPDANNIAQRTGIQ 180 Query: 158 MGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVTVKR-----GFLEDSNANSMYEMG 211 +GL G + S PL+++ +K+ G+LE SN + E+ Sbjct: 181 IGLTQFVNPAGLEKAGGSLFYETESSGAPLKEVENNNLKQSKIHTGYLEASNVQTADEIV 240 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + + +I ++ + +A N+ Sbjct: 241 NLIVTQRAYEMNSKVITAADEMLQQA-NNL 269 >gi|302874613|ref|YP_003843246.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|307690776|ref|ZP_07633222.1| flagellar basal body rod protein FlgG [Clostridium cellulovorans 743B] gi|302577470|gb|ADL51482.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] Length = 254 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 117/259 (45%), Gaps = 23/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV----------GA 47 M + L+ ++ E R++++++N++N +TVG+++ + F +V+ Sbjct: 1 MIRALYTSLSGMISKEARMNSISNNLANANTVGYKSDDLILKSFDQVLLENRGKKNGEAH 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 ++N++ V + Y G+ ST ++ D A+ GD +F +E TRDG F Sbjct: 61 VRNELGGLSLGVELDETYTDYNQGTLESTDSQTDLAILGDGFFTVERNGNKFYTRDGNFS 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG---KVIATMGLYSVD 164 V G +V++ G Y +L I + + +V + G ++ KV + + Sbjct: 121 VDPQGYMVNSKGDY-LLGNNGNRIYV--ANGKIDVKDNGVLTVDNGNTKVAYNLDVVDFA 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 VR ++ S P + VK+ LE SN N + M +M+ + ++F + Sbjct: 178 DKNTLVRNGDNLYSGGNPTAA----TKFNVKQRALEKSNVNVVNGMIEMMSVYREFETNQ 233 Query: 225 TLIDENEKSMLEAIRNIAS 243 +I ++++ +++ + S Sbjct: 234 KVIQTLDETLGKSVNQLGS 252 >gi|261409668|ref|YP_003245909.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261286131|gb|ACX68102.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 275 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 40/277 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKIS 57 M S + + AL+QRL +ADNM+N +T G++ + F +V+ ++ D D+ Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFEDVLTQVQGHHKDFDRTGR 60 Query: 58 FVASG----------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 G + E G+ TG LD ++G A FA++ I TR+G F Sbjct: 61 ATPLGYTLGYGMRLSSVVPNMEQGAMKETGNPLDLMIDGQAMFAVQGDGAIGYTREGGFH 120 Query: 108 VTDDGS------LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVI 155 V+ D LV++ G YPVLD+ PI +P K + + E+G+I + Sbjct: 121 VSPDARNPNNLLLVNSQG-YPVLDVNDNPISLPAKGK-VAINERGQIIVETPTGGRTAPY 178 Query: 156 ATMGLYSVDMSQGFVRRENSGI-----------SPNIPPTPLEDLSGVTVKRGFLEDSNA 204 AT+ L ++ +G V ++ PP P E V GF+E SN Sbjct: 179 ATLKLVELERPEGLVAVGDNLFVLGNGLAEGDVFDTTPPAPGE-PPKSKVLSGFVEQSNV 237 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 N E+ +M+ + + + + ++ +M+ + Sbjct: 238 NLTDELTKMMEVQRAYQLTARALSSSD-TMMNLANTM 273 >gi|291523980|emb|CBK89567.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629] Length = 272 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 108/272 (39%), Gaps = 33/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M + A + + T+A+N+SN +T GF+ + +F ++ D Sbjct: 1 MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60 Query: 53 DQKISFVASGKEYLSK----EVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFK 107 + V G + G ST DFALEGD +FA+ + TR+G F Sbjct: 61 KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120 Query: 108 VTDDGS----LVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEI---SQKGKVIA-- 156 + G+ L + G PV+D I +P E + GE G + + +G I Sbjct: 121 WSQYGNGQTILTDSQGN-PVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLN 179 Query: 157 -TMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKR-----GFLEDSNANSMYE 209 + +Y + G ++ S ++ P+ + + +K G+LE SN E Sbjct: 180 QRIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEAANPALKSSKVVTGYLEGSNVQVADE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M +I + + + I + SMLE N+ Sbjct: 240 MVNLIVAQRAYELNSKAITTAD-SMLETANNL 270 >gi|329928721|ref|ZP_08282570.1| putative flagellar basal-body rod protein FlgB [Paenibacillus sp. HGF5] gi|328937502|gb|EGG33920.1| putative flagellar basal-body rod protein FlgB [Paenibacillus sp. HGF5] Length = 275 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 119/277 (42%), Gaps = 40/277 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKIS 57 M S + + AL+QRL +ADNM+N +T G++ + F +V+ ++ D D+ Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFEDVLTQVQGHHKDFDRTGR 60 Query: 58 FVASG----------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 G + E G+ TG LD ++G A FA++ I TR+G F Sbjct: 61 ATPLGYTLGYGMRLSSVVPNMEQGAMKETGNPLDLMIDGQAMFAVQGDGAIGYTREGGFH 120 Query: 108 VTDDGS------LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVI 155 V+ D LV++ G YPVLD+ PI +P K + + E G+I + Sbjct: 121 VSPDARNPNNLLLVNSQG-YPVLDVNDNPISLPAKGK-VAINESGQIIVETPTGGRTAPY 178 Query: 156 ATMGLYSVDMSQGFVRRENSGI-----------SPNIPPTPLEDLSGVTVKRGFLEDSNA 204 AT+ L ++ +G V ++ PP P E V GF+E SN Sbjct: 179 ATLKLVELERPEGLVAVGDNLFVLGNGLAEGDVFDTTPPAPGE-PPKSKVLSGFVEQSNV 237 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 N E+ +M+ + + + + ++ +M+ + Sbjct: 238 NLTDELTKMMEVQRAYQLTARALSSSD-TMMNLANTM 273 >gi|148240969|ref|YP_001220470.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] gi|146411345|gb|ABQ39798.1| putative flagellar basal-body rod protein flgF [Bradyrhizobium sp. BTAi1] Length = 244 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 12/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQK 55 M + I L+ +ALE+RL VA+N++N DT GFR ++ F E + K ++ Sbjct: 1 MGETTTIHLSRLIALERRLDNVANNVANADTTGFRARQLSFQEYLSPAKEGEANGKRERP 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S V +G +Y G+ TG LD A+ GD +FA+++P+G TR G G LV Sbjct: 61 VSLVNAGLQYPDSAGGAIQLTGNPLDVAIVGDGYFAVQTPQGERYTRAGSLTTDATGRLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G P+L PI + + + G IS + I ++ L D ++ S Sbjct: 121 TMDG-LPILSRTG-PITVAPGERSLTIASDGTISSSQRTIGSLRLVRFDGP---LQAMGS 175 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + + P V + G LE SN ++ EM ++ +T+ + + L+ ++ Sbjct: 176 NLFESRSPALNIPTGSVKLLVGDLEKSNVQNVQEMSRLSEVTRSYEQVGGLLKNSQNVDD 235 Query: 236 EAIRNIAS 243 + + S Sbjct: 236 --LNKLGS 241 >gi|87119675|ref|ZP_01075572.1| hypothetical protein MED121_07040 [Marinomonas sp. MED121] gi|86165151|gb|EAQ66419.1| hypothetical protein MED121_07040 [Marinomonas sp. MED121] Length = 247 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 12/236 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + + A+N++N +T GFR + + + + + Sbjct: 1 MDRALYLAMSGGKQIMHAQTVRANNLANVNTTGFRADFEQARAM--PVYGEHYASRVYSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + E G+ I T LD A++GD + A+ +G TR G ++T +G LV+ SG Sbjct: 59 TENPATRYESGALIQTDRPLDIAMQGDGFIAVLDHQGAEAYTRSGDLQITANGQLVNGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRE 173 P++ PI +P D+ ++GE G IS +AT+G + V+ + + Sbjct: 119 -LPIMGARG-PIFLPPIDK-ISIGEDGTISIVPEGGSAAEVATIGQIKLVNPDTQLIEKG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 G+ TP E +K GFLE SN +++ E+ +++ L+++F ++D Sbjct: 176 TDGLLRAKAGTPFEQDFTAALKSGFLESSNVSAVEELTKIMSLSRQFEMNIKVMDT 231 >gi|254292905|ref|YP_003058928.1| flagellar basal body rod protein FlgG [Hirschia baltica ATCC 49814] gi|254041436|gb|ACT58231.1| flagellar basal-body rod protein FlgG [Hirschia baltica ATCC 49814] Length = 261 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 98/262 (37%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + + A + + +++N++N +T G++ + +F +++ + Sbjct: 1 MRALSTAATGMQAQQLNVEVISNNIANMNTTGYKRQRAEFQDLLYTNMEKMGVSSSDANT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V +G Y E G T D A++GD +F ++ P G TR G F Sbjct: 61 IVPTGVQIGTGVKAGSVYRITEQGPVQQTSNSYDVAMQGDGYFIVQLPDGRDAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK------GEISQKGKVIATMGL 160 V DG +V+ G S I +P+ + + + + + L Sbjct: 121 SVNGDGQIVTEDGY-----TVSPGINVPEDTLSVTINAQGTVTATTAGATDPTDLGALEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ + + L T+ +GFLE SN N++ E+ +I+ Sbjct: 176 ARFVNPAGLDAIGDNLLLETVASGAANVGQAGALGFGTILQGFLETSNVNAVTEISALIN 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + + +I ++ + Sbjct: 236 AQRAYEMNSKVITATDEMLQTT 257 >gi|23092316|gb|AAN08641.1| FlgF [Aeromonas hydrophila] Length = 248 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 107/240 (44%), Gaps = 10/240 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ +N++N +T+GF++ + + + A + ++ F Sbjct: 1 MDHLLYIAMSGAKENMNSLAVRGNNLANANTIGFKSD-FEQARSMQAFGEGLPSRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + + + + G ++TG +LD A++G W A++ P G TR G +++ G+L +++G Sbjct: 59 TERPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQDPKGGEAYTRMGNLQLSATGNLQTSTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT------MGLYSVDMSQGFVRRE 173 V+D PI +P E + G IS + + A + V + V + Sbjct: 119 -LNVVDDGGQPIVLPLPMEKIEINRDGTISGRPEGAAANLPEDFQRIQLVKPAADAVEKG 177 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ + V + G LE SN N + EM +I L ++F + ++ E++ Sbjct: 178 QDGLFRRKDGQTEAASANVGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEEN 237 >gi|291528558|emb|CBK94144.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1] Length = 272 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 33/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M + A + + T+A+N+SN +T GF+ + +F ++ D Sbjct: 1 MMRALYTAATGMRAEQTNVDTIANNLSNVNTTGFKGQRTEFKSLLYQTIQTRSTSGNGDA 60 Query: 53 DQKISFVASGKEYLSK----EVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFK 107 + V G + G ST DFALEGD +FA+ + TR+G F Sbjct: 61 KPVGAQVGLGTRVAATTSTYTQGPLNSTERPTDFALEGDGFFAVRGTDNQTYYTRNGAFT 120 Query: 108 VTDDGS----LVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEI---SQKGKVIA-- 156 + G+ L + G PV+D I +P E + GE G + + +G I Sbjct: 121 WSQYGNGQTILTDSQGN-PVMDTNGNIIAVPAGVSAEKMSFGEDGAVGYMTAQGNYINLN 179 Query: 157 -TMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + +Y + G ++ S ++ L V G+LE SN E Sbjct: 180 QRIAVYQFNNPSGLEKQSGSLLAATANSGNPMLEAANPALKNSKVVTGYLEGSNVQVADE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M +I + + + I + SMLE N+ Sbjct: 240 MVNLIVAQRAYELNSKAITTAD-SMLETANNL 270 >gi|145298492|ref|YP_001141333.1| flagellar basal body rod protein FlgF [Aeromonas salmonicida subsp. salmonicida A449] gi|142851264|gb|ABO89585.1| flagellar basal body rod protein FlgF [Aeromonas salmonicida subsp. salmonicida A449] Length = 248 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 10/240 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ +N++N +TVGF++ + + + A + ++ F Sbjct: 1 MDHMLYIAMSGAKENMNSLAVRGNNLANANTVGFKSD-FEQARSMQAFGEGLPSRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + + + + G ++TG +LD A++G W A++ P G TR G +++ G+L +++G Sbjct: 59 TERPGQNLQHGMLMTTGRDLDVAVDGQGWIAVQDPKGGEAYTRMGNLQLSATGNLQTSTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT------MGLYSVDMSQGFVRRE 173 V+D PI +P E + G IS + + A + V + V + Sbjct: 119 -LNVVDDGGQPIVLPLPMEKIEINRDGTISGRPEGAAANLPEDFQRIKLVKPAADAVEKG 177 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ + V + G LE SN N + EM +I L ++F + ++ E++ Sbjct: 178 QDGLFRRKDGQNEAASATVGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEEN 237 >gi|260762610|ref|ZP_05874944.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] gi|260673033|gb|EEX59854.1| flagellar basal-body rod protein FlgG [Brucella abortus bv. 2 str. 86/8/59] Length = 243 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 33/247 (13%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQKI----SFVASGKEYLSKE-- 69 +A+N++N +T GF+ + +F++++ + N +Q I + V G + + Sbjct: 2 IANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQAIVPEGALVGLGVQTAAVRNL 61 Query: 70 --VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDM 126 GSF TG D AL G WF ++SP G + TR G F DG LV+ G PV Sbjct: 62 HIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQLVTLDGN-PVEPA 120 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQGF------VRREN 174 I IP + + G++ K + + + L + G + RE Sbjct: 121 ----ITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGLEPLGGNLYRET 176 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + P + G ++K+G+LE SN + + E+ +I + + + +I ++ Sbjct: 177 EASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITAQRAYEMNSKVIQAADEMA 235 Query: 235 LEAIRNI 241 +N+ Sbjct: 236 ATVSKNL 242 >gi|85715052|ref|ZP_01046037.1| hypothetical protein NB311A_11787 [Nitrobacter sp. Nb-311A] gi|85698249|gb|EAQ36121.1| hypothetical protein NB311A_11787 [Nitrobacter sp. Nb-311A] Length = 262 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 98/262 (37%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T G++ + F +++ + + S Sbjct: 1 MRALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASAQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + G+ TG +LD A+ G+ +F + P G TRDG F Sbjct: 61 ILPVGIDLGGGVKTVGTPRQMSQGTLSQTGNDLDIAIRGEGFFKILMPDGTFQYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ + G +V+A G PV I IPQ + +G++S V+ +GL Sbjct: 121 QMDNQGRIVNAQGN-PVQPT----ITIPQNSAGITINSQGQVSVTLPGQTTPTVLGQIGL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ P +D +++ LE +N + E+ +I Sbjct: 176 TRFINKAGLQPVGDNNFKETPASGPFQDGIANIDGFGDMQQSSLEQANVEVVSEISDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + ++ ++ + A Sbjct: 236 AQRAYEMNAKVVSAADQMLQSA 257 >gi|83814111|ref|YP_446742.1| flagellar basal-body rod protein [Salinibacter ruber DSM 13855] gi|83755505|gb|ABC43618.1| flagellar basal-body rod protein [Salinibacter ruber DSM 13855] Length = 241 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 102/245 (41%), Gaps = 9/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F AA + + VA+N++N T G++ +V F+E + IS Sbjct: 1 MLPRFQNAAAAMSEMRLQQEQVANNLANASTTGYKKDRV-FTEALNERLTKDGSPISDRR 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSAS 118 ++ GS TG LD AL + +F + G TR G F V G+L + Sbjct: 60 L-EQANDLSGGSLKETGNPLDVALGDEGFFVTQPRGGGAERYTRAGHFVVGSQGTLRTPE 118 Query: 119 GKYPVLDMASVPIQIP-QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G+ V+ PIQ+P ++ ++ + G I+ + + + + + + + R + Sbjct: 119 GR-EVMGEGG-PIQLPVEQGGDISISKSGRITAGQQQVGALRVATFENPEQLERTSGASF 176 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + + V +G +E SN + + E+ MI + ++F + I + + A Sbjct: 177 AAGD--AQPQAAENPVVLQGKVETSNVDPVTELTNMIEIQRQFEAQQKTIQTTDGVLGRA 234 Query: 238 IRNIA 242 +++ Sbjct: 235 TQSLG 239 >gi|220930464|ref|YP_002507373.1| hypothetical protein Ccel_3101 [Clostridium cellulolyticum H10] gi|220000792|gb|ACL77393.1| protein of unknown function DUF1078 domain protein [Clostridium cellulolyticum H10] Length = 265 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 112/269 (41%), Gaps = 34/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 M + LA +++L + +NM+N +T ++ V F E++ ND + Sbjct: 1 MIRGLYTSAWSMLANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTN 60 Query: 58 FVAS----------GKEYLSKEVGSFISTGTELDFALEGD--------AWFAL------E 93 A G+ Y G + TG D A++ D A+F + + Sbjct: 61 PSAVVGTMELSSDVGEVYTYYTQGQMVQTGDRYDLAIKDDNTGEVASPAFFTVGVINPQD 120 Query: 94 SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 + T++G F + + LV+ G Y VL PI + D F V KG I Q G Sbjct: 121 NTVQEFYTKNGSFSLDANNQLVTGDG-YAVLGKKG-PITLKTGD--FTVDSKGNIMQNGA 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 V+ T+ + S + N+ + N + + SG TV +GF E SN N + EM M Sbjct: 177 VVDTLRIAQFADSTQLRKLGNNLVMNN--GGEVAEFSG-TVIQGFDEQSNVNVIDEMVDM 233 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIA 242 I + + + + ++ + ++ +A+ I Sbjct: 234 ITVMRAYEANQKVLQAQDGTLEKAVNEIG 262 >gi|303239788|ref|ZP_07326312.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592725|gb|EFL62449.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 259 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 26/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A +++ +++N++N T G++ V + A+ ++ S + Sbjct: 1 MIRALYTSGWSMNANNKQMDVISNNLANVSTNGYKKDTVVYESFPNALVRRVNDTESTLN 60 Query: 61 -------------SGKEYLSKEVGSFISTGTELDFAL--EGDAWFALESPRG-----IIL 100 G+ + G STG LD A+ A+F + P Sbjct: 61 PSGKVGDVQLGNDVGQVFTYYTSGQLASTGNNLDLAIGSSDSAFFTIGVPSENGELTEYY 120 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 TRDG F + LV++ G Y V+ PI + + E F+V + G I Q G+V+ + + Sbjct: 121 TRDGSFCLNSAKQLVTSEG-YMVMGTDG-PITL--ESENFSVLDDGSIVQNGQVVDKLAI 176 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + I E VK+G+LE SN N + EM MI + + + Sbjct: 177 KDFTDTSTLRKFGENLIQTTEETQ--EQEFNGVVKQGYLEQSNVNVVNEMINMITVMRAY 234 Query: 221 NSITTLIDENEKSMLEAIRNIAS 243 S +I + ++ +A+ + + Sbjct: 235 ESNQKVIQALDGTLEKAVNEVGA 257 >gi|148980300|ref|ZP_01815987.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] gi|145961319|gb|EDK26629.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] Length = 250 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 105/255 (41%), Gaps = 32/255 (12%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------------QKISF 58 A + +++ +++N++N +TVGF+ +V F ++ ++ Q + Sbjct: 1 MAAQDAKMTAISNNLANINTVGFKRDRVVFEDLFYSVDKQAGTETTELNEHPTGIQLGNG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSA 117 V G+ +T + D A+ GD +F +E+ G + TR+G+F+ DG LV+ Sbjct: 61 VRVVGTEKVFTQGNIQNTNQQFDLAILGDGFFQIENSDGELLYTRNGQFQTNSDGQLVNT 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF-- 169 G YP++ + IP + + ++ G +S + + + + G Sbjct: 121 QG-YPLIPE----VVIPPEATLVSITADGVVSATIPGQVNPEDLGQITIVKFMNPAGLSA 175 Query: 170 ----VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + E G + + SG +K+G LE SN + EM MI + + Sbjct: 176 QGGNLFVETEGSGEAVELVAGTEGSG-QLKQGALEGSNVQVVEEMVDMIATQRAYEMSAK 234 Query: 226 LIDENEKSMLEAIRN 240 ++ ++ + + Sbjct: 235 MVSAADEMLQYIAQQ 249 >gi|319650828|ref|ZP_08004965.1| flagellar basal-body rod protein [Bacillus sp. 2_A_57_CT2] gi|317397426|gb|EFV78127.1| flagellar basal-body rod protein [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 109/280 (38%), Gaps = 42/280 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGA---------- 47 M F + LA ++R + +NM+N +T GF+ + F E++ Sbjct: 1 MFRGFYTAASGMLAQQRRTEVLTNNMANANTPGFKADQTSLRAFPEMLLQRIGQKTVPTE 60 Query: 48 ------IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDA 88 ++ S V + S G TG D AL G Sbjct: 61 KGLNLPFNQEVGSLNSGVYMQETLPSFMQGDMKETGLNTDLALLDLNLPVNPDTGLSGSV 120 Query: 89 WFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 ++ G TR+G F + +G L +ASG Y +LD A IQ+ + F V E G Sbjct: 121 FYTAAGIDGEQRYTRNGNFTLDGEGYLTTASGLY-ILDDAGERIQL--SSDRFKVSEDGV 177 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDS 202 I+ + A +G+ + R+E G+ + LE+ +++G+LE S Sbjct: 178 ITGEAGETARLGIMYAQNPESL-RKEGDGLFAVTEESVLENAYNAQNVQFKLQQGYLERS 236 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N ++ M M+ + F + ++ ++SM +A I Sbjct: 237 NVDASRTMTDMMTAYRSFEANQKVLQAYDRSMEKAANEIG 276 >gi|149927799|ref|ZP_01916050.1| hypothetical protein LMED105_11310 [Limnobacter sp. MED105] gi|149823421|gb|EDM82652.1| hypothetical protein LMED105_11310 [Limnobacter sp. MED105] Length = 245 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 12/247 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A R +A+N++N +T GFR + F + + SF Sbjct: 1 MDKLIFLAAQAAKGTMSRQENIANNLANVNTPGFRQQLMAFQS--APVTGEGSGSRSFAV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G STG E+D A++G+ WFA+ +G TR+G F++ G+LV+ G Sbjct: 59 ETSIGFDTTPGQIQSTGREMDVAIQGEGWFAVNDAKGNEAYTRNGSFQLDGQGNLVTQEG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN 174 Y V+ PI +P D + G +S V+ L V++ +G + R + Sbjct: 119 -YSVIGSNG-PINVPP-DHRLSFEGDGSVSAIPISGDTNVVQLGRLKLVNIPEGDINRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ P E V V GF+E SN N++ M QMI +++ + +I +++ Sbjct: 176 DGLFRAANGDPAEADLNVRVAGGFIESSNVNAVDMMVQMITAARQYETQMKMISTAKEN- 234 Query: 235 LEAIRNI 241 +A ++ Sbjct: 235 GQAANSL 241 >gi|326404069|ref|YP_004284151.1| flagellar basal-body rod protein FlgG [Acidiphilium multivorum AIU301] gi|325050931|dbj|BAJ81269.1| flagellar basal-body rod protein FlgG [Acidiphilium multivorum AIU301] Length = 260 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 104/266 (39%), Gaps = 32/266 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + +I A + + +++N++N T G++ +V F +++ S Sbjct: 1 MRALDIAATGMQAQQTNVEVISNNIANMTTTGYKAQRVAFQDLLYQDLRRAGSNSSDAGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + Y + G+ T LD A+ G+ WF + P G TRDG F Sbjct: 61 IVPSGTQIGLGVKTAAIYRIDQQGNLQQTNNTLDMAISGNGWFQVTLPSGQTAYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ +G++V+A G Y V IQIP + G++ + + + L Sbjct: 121 GLSPNGTIVTADG-YVVQPG----IQIPTNATNVTINASGQVQVSLPGQTAPQTVGQLQL 175 Query: 161 YSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + + + P+ TV +GF+E+SN N + E+ +I Sbjct: 176 AVFPNDAGLAAQGGNLFLQTAASGNPVTGAPSAPGFGTVMQGFVENSNVNVVSEVTDLIT 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + ++ + ++ + ML + + Sbjct: 236 AQRAYDMNSQVVTATNQ-MLSTLTQL 260 >gi|289523333|ref|ZP_06440187.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503025|gb|EFD24189.1| flagellar basal-body rod protein FlgG [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 256 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 96/257 (37%), Gaps = 17/257 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV-----------G 46 M +A L E+ + ++N++N DT GF+ + F EV+ Sbjct: 1 MFRGLYGASSAMLVQEKVIDVASNNLANVDTAGFKRRISVNKSFPEVMIERREAVGPFER 60 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 + I V + + G +ST LD A+ G +F+L G I +R G Sbjct: 61 QVYWPIGSASLNVVLSETTVDLSEGQVVSTDNPLDVAISGRGFFSLRDGAGNIFYSRAGN 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F + +G +V+ G +L VPI + + E+G + G+++ + L+ Sbjct: 121 FTLDANGFIVNQEG-LTLLGDGGVPINV-GDVSSVAIDERGTVVADGEILGAIQLFEFAN 178 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + N + + G LE SN N +YEM ++I + + + Sbjct: 179 PTYLRNYAKNLFQANEAAGEPVLVETPMLVPGALEKSNVNVVYEMVRLIEGQRAYEASAR 238 Query: 226 LIDENEKSMLEAIRNIA 242 + ++ I Sbjct: 239 TLTMQDEQTGSMINTYG 255 >gi|241766921|ref|ZP_04764727.1| flagellar basal-body rod protein FlgF [Acidovorax delafieldii 2AN] gi|241362625|gb|EER58473.1| flagellar basal-body rod protein FlgF [Acidovorax delafieldii 2AN] Length = 246 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 11/237 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A QR + +A+N++N T GFR F V ++ D + F Sbjct: 1 MDRIIYTSMTGANAAAQRQAVLANNLANASTQGFRAEMSTFRSV--PLQGDGSKTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG LD G+AWF ++ G TR G F+V+ G+L++++G Sbjct: 59 EATSGHLQTPGPVQRTGRALDAMAMGNAWFGVQGLDGLEAYTRAGGFEVSSAGTLLTSTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 VL A PI +P E ++G G IS Q I + L + +R + Sbjct: 119 -LTVLSDAGAPIDVPPGAE-VSLGADGTISAKTAGQPATTIGRLKLATPTADNPL-KRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G+ PL + + G +E SN N++ M MI ++F L+ E Sbjct: 176 DGLFRTTSGDPLPNDPTARMLAGAIEGSNVNAVESMVGMIAAARQFEQQMKLLQTAE 232 >gi|83589650|ref|YP_429659.1| hypothetical protein Moth_0798 [Moorella thermoacetica ATCC 39073] gi|83572564|gb|ABC19116.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 280 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 117/278 (42%), Gaps = 38/278 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + G + A + ++ ++A++++N +T G++ ++V FS++V + + Sbjct: 2 MIGALWRGASGMRAQQVQVDSLANDIANVNTTGYKQVRVGFSDLVYRPVMEAGMPVEQPQ 61 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRF 106 + V G+ + TG L+ A++G+ +FA+ + G TRDG F Sbjct: 62 APGSTVSLGTGVKVASIVKDFSQGALVQTGEPLNLAIQGEGFFAVVNGAGERFLTRDGNF 121 Query: 107 KVTDDGSLVSASGKY---PVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKV--IATMG 159 DG++V+ G Y P + VP+ +P + E NV G I + G+V + + Sbjct: 122 HRDADGNVVNDGGYYLAIPAGNNQDVPLNLPPEAENINVAADGTITATVNGQVQPLGQIY 181 Query: 160 LYSVDMSQGFVRRENS----------------GISPNIPPTPLEDLSGVTVKRGFLEDSN 203 LY+V G ++ G + N T T++ G+LE +N Sbjct: 182 LYTVSNPAGLEAVGDNLYRLTPACGQLFYGAPGTAGNSETTGTPGPVLGTLRSGYLEAAN 241 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + M +M+ + + + I ++ M N+ Sbjct: 242 VDLAATMTRMVVAQRAYELNSRTIRVADE-MWSLANNL 278 >gi|261856359|ref|YP_003263642.1| flagellar basal-body rod protein FlgF [Halothiobacillus neapolitanus c2] gi|261836828|gb|ACX96595.1| flagellar basal-body rod protein FlgF [Halothiobacillus neapolitanus c2] Length = 247 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 17/241 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ ST A+N++N T GF+ F + + + Sbjct: 1 MDRLAYIAMSGAKQTLLAQSTNANNLANVSTQGFKADLDAFQSM--PVYGPGYASRVYAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G ++TG LD AL+G + A+++P G TR G ++ +G L + +G Sbjct: 59 DERSGTDFAQGPLMTTGRSLDVALKGQGFMAVQAPDGSTAYTRRGDLHISPNGQLQTGTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PVL PI IP ++ G IS I + L + ++ ++ Sbjct: 119 A-PVLGNQG-PIAIPP-ASKIDILGDGTISIIPLGGDVNAPAQIDRIRLVNPPLAD--LQ 173 Query: 172 RENSGISPNIPPTPL-EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + G+ P TP+ + + V V G LE SN N + M +MI + F T +I Sbjct: 174 KRGDGLFALKPNTPVPQPDAAVQVASGVLEGSNVNPVDSMVKMIEYGRLFEMQTKMIKTA 233 Query: 231 E 231 + Sbjct: 234 D 234 >gi|209963565|ref|YP_002296480.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] gi|209957031|gb|ACI97667.1| flagellar basal-body rod protein FlgG [Rhodospirillum centenum SW] Length = 261 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 104/266 (39%), Gaps = 32/266 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + NI +A + + +++N++N +TVGF+ + +F +++ + + S Sbjct: 1 MRTLNIAATGMMAQQLNVEVISNNIANLNTVGFKRSRAEFQDLMYQAQVRPGSESSDQDT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V G T + D AL+G +F + P G TR G F Sbjct: 61 IVPAGIQLGLGVKPAAVSRMHGQGPLTPTENDYDVALDGRGYFVITLPNGDTAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 +++ +G++V+ G S I +P + GE+ + + + + Sbjct: 121 QLSPEGTIVTVDGY-----TVSPNITVPDNTRKVAINRNGEVLAFIDGQTEPENVGQFEV 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ P+ + G +++G++E +N N + E+ +I Sbjct: 176 ATFVNEAGLEAMGDNLFRETPASGIPILGIPGQLGYGGIRQGYVEAANVNIVQEITSLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +++ ++ ML + + Sbjct: 236 AQRAYEMNSRVVEAGDQ-MLNTVTQM 260 >gi|296534159|ref|ZP_06896653.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] gi|296265514|gb|EFH11645.1| flagellar basal-body rod protein FlgF [Roseomonas cervicalis ATCC 49957] Length = 248 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 107/245 (43%), Gaps = 6/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKI 56 M + L+ A ++ + +A N++N DT G+++ ++ F +G +++ Sbjct: 1 MDMPGYVVLSRLAAQQRATAALAMNIANADTPGYKSAQMVFGAHIDRQLGVDAPRGGREV 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +F + GS +TG LD AL G+ +FA+++ G TR GRF ++ +G +V Sbjct: 61 AFSQDRATWRDFTPGSLQATGNPLDLALGGEGFFAVQTGNGERYTRAGRFALSPEGGIVD 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G PVL+ P+ +P + ++ G + + + + + + Q + + Sbjct: 121 IGGN-PVLNEDGAPLVLPPNAQRIDITGDGTVRTEQGPVGRLRVVNFADPQKLIAQGERL 179 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P + + V +G +E SN S+ E+ ++ ++F + ++ Sbjct: 180 FEAPAE-LPAQPVDAPRVVQGSVEGSNVQSIVELTRLTAEMREFQFASQFVETEGDRAKT 238 Query: 237 AIRNI 241 A+ I Sbjct: 239 AVERI 243 >gi|49089306|gb|AAT51668.1| PA1081 [synthetic construct] Length = 250 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 21/245 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ + A+N++N T GFR + + + D F Sbjct: 1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSM--QVSGDSFPARVFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS TG ELD A++GD + A+++P G R + G L + G Sbjct: 59 SERPGTDFSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PVL PI +P + E +G+ G IS + V+ + L + ++ Q + Sbjct: 119 -LPVLGNGG-PIAVPPE-EKVEIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQ--ME 173 Query: 172 RENSGISPNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P P E + V V GFLE SN N++ EM ++ L+++F ++ Sbjct: 174 KGTDGLLHYKP-QPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMM 232 Query: 228 DENEK 232 E Sbjct: 233 RTAED 237 >gi|73539451|ref|YP_299818.1| flagellar basal body rod protein FlgF [Ralstonia eutropha JMP134] gi|72122788|gb|AAZ64974.1| Protein of unknown function DUF1078 [Ralstonia eutropha JMP134] Length = 247 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 16/251 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ + + + V++N++N T FR + V + +F Sbjct: 1 MDRMIYTALSGAKQILDQQAAVSNNLANVSTPAFRAQVNMYRAV--PVVGQESPTRAFTL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG LD AL+G+ W +++ G TR G ++ DG + ++SG Sbjct: 59 ASTPGADMRAGPLTYTGRPLDVALQGNGWLVVQARDGSEAYTRAGSLQIAQDGQVQTSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV------DMSQGFVRRE 173 PV+ P+ +P + +G G I+ +G A+ GL V + + R Sbjct: 119 -LPVMGDGG-PLSVPPGSQ-VTIGSDGTITARGPGEASAGLAQVGKLRVVNPPADSIARG 175 Query: 174 NSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DE 229 + G+ P PLE V V G +E SN N M MI ++F +I D Sbjct: 176 DDGLFRLRPGAQPLEADPTVRVVSGAIEGSNVNPTEAMVDMIANARRFEMQMKMITGADT 235 Query: 230 NEKSMLEAIRN 240 N++ + + Sbjct: 236 NDQRANQLLST 246 >gi|167464160|ref|ZP_02329249.1| flagellar basal body rod protein FlgG [Paenibacillus larvae subsp. larvae BRL-230010] Length = 270 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 111/269 (41%), Gaps = 32/269 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + +L + +N++N +T+GF+ +V F +++ Sbjct: 1 MLRSMYSGISGMRGFQTKLDVIGNNIANVNTIGFKGSRVMFQDLMSQTIRGATGPTDTQG 60 Query: 49 -KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDG 104 N + + + L G+ +T + D +EGD +FA+++ LTR G Sbjct: 61 GVNGQQIGLGSTVASIDTLHTNTGAM-NTYVKTDMRIEGDGYFAVKTSSESDTYYLTRAG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG 159 FKV LV+A G VL+ PI+ + ++ G G I+Q + + I +G Sbjct: 120 NFKVDAQRRLVTADGML-VLNSDGDPIEFSENMTDYSFGADGTITQILKGGEKETIGQIG 178 Query: 160 LYSVDMSQGFVRRENSGIS---------PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + V G ++ + P I + T+ G LE SN + E Sbjct: 179 VVKVTNPSGLMKVGGNLFELTPNAHDGDPGISTPKNAETGTGTLMTGSLEMSNVDLTSEF 238 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + F + + +I +++ + E + Sbjct: 239 TEMIVAQRGFQANSRIITTSDEVLQEVVN 267 >gi|291518271|emb|CBK73492.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4] Length = 267 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 115/268 (42%), Gaps = 29/268 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVG------AIKND 51 M + ++R+ + +N++N+ T G++ + F E + + ++ Sbjct: 1 MVKGLYTAYTGMVNEQKRMDVMTNNLANSATTGYKKEAMIAQAFDERLAIKIKDTSSWHN 60 Query: 52 IDQKISFVA----SGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTR 102 + I +++ G+ Y + + G+F T + D AL G +FA+E I TR Sbjct: 61 APEGIGYISLGAKVGETYTNWDQGAFQITDKDSDVALAGRGFFAIEFTNKAGETSIKYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVP--------IQIPQKDEIFNVGEKGEISQKGKV 154 DG F V DG L + G Y + ++ +QI + + G I Q G+ Sbjct: 121 DGAFVVDRDGYLRTVDGDYVLTQEGAMNSQGGEDNYVQIDPNLKYV-IATDGSIRQNGEE 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + T+G+ +D ++ + + IP + + V V++G LE SN N + EM MI Sbjct: 180 VTTIGVIDIDNYD-YINKYGENLYDLIPGGNIVESEAV-VQQGMLEASNVNVIDEMVSMI 237 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + +I + ++ + I Sbjct: 238 TIARAYEAGQKMIQAEDSTLEKTANQIG 265 >gi|313903629|ref|ZP_07837019.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] gi|313466182|gb|EFR61706.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] Length = 272 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 99/249 (39%), Gaps = 12/249 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDIDQKI-- 56 + LA + +A +++N +T G++ + F E++ + + + Sbjct: 25 LRGLYTAASGMLARVLQQERLAGDLANVNTPGYKASRNVTEAFPELLLSRLDGTGAPVVG 84 Query: 57 ---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + + G +++TG D ALEGD +F + P G TR G F V G Sbjct: 85 PLGTGTVVAEPGADMRPGPWVTTGRPQDLALEGDGFFVVMGPGGPAYTRAGNFTVGSQGY 144 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 L + G PVLD P+ + F V G++ V+ T+ + G R Sbjct: 145 LQAPDGS-PVLDTTGQPLLV--GSAQFTVRPDGQVVVGDAVLGTIARVTFANPAGLRRVG 201 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 ++ P + V++G LE SN + + + M+ + F + + +++ Sbjct: 202 DNLWQATAESGPAVPAATP-VRQGVLEQSNVDPVQVVVAMLANFRAFEAAQRAVQAQDQT 260 Query: 234 MLEAIRNIA 242 + AI+ + Sbjct: 261 LGLAIQEVG 269 >gi|15596278|ref|NP_249772.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PAO1] gi|107100526|ref|ZP_01364444.1| hypothetical protein PaerPA_01001551 [Pseudomonas aeruginosa PACS2] gi|116049010|ref|YP_792188.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa UCBPP-PA14] gi|218892955|ref|YP_002441824.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa LESB58] gi|254234217|ref|ZP_04927540.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa C3719] gi|254239439|ref|ZP_04932761.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 2192] gi|296390555|ref|ZP_06880030.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PAb1] gi|313106036|ref|ZP_07792295.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 39016] gi|9946997|gb|AAG04470.1|AE004539_12 flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa PAO1] gi|115584231|gb|ABJ10246.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa UCBPP-PA14] gi|126166148|gb|EAZ51659.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa C3719] gi|126192817|gb|EAZ56880.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 2192] gi|218773183|emb|CAW28995.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa LESB58] gi|310878797|gb|EFQ37391.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa 39016] Length = 249 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 21/245 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ + A+N++N T GFR + + + D F Sbjct: 1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSM--QVFGDSFPARVFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS TG ELD A++GD + A+++P G R + G L + G Sbjct: 59 SERPGTDFSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PVL PI +P + E +G+ G IS + V+ + L + ++ Q + Sbjct: 119 -LPVLGNGG-PIAVPPE-EKVEIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQ--ME 173 Query: 172 RENSGISPNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P P E + V V GFLE SN N++ EM ++ L+++F ++ Sbjct: 174 KGTDGLLHYKP-QPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMM 232 Query: 228 DENEK 232 E Sbjct: 233 RTAED 237 >gi|295678057|ref|YP_003606581.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1002] gi|295437900|gb|ADG17070.1| flagellar basal-body rod protein FlgF [Burkholderia sp. CCGE1002] Length = 252 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 14/248 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++N T GFR + V + + + Sbjct: 1 MDRLIYTAMSGSAQALEQQAIVANNLANASTTGFRAQLETYRAVPMSFGDGSTINDNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV S G TG LD A++G W ++++ G TR G + ++G LV Sbjct: 61 TFVLSSTPGADFTPGPIQQTGNPLDVAIQGAGWLSVQTADGNEAYTRAGNLHIDENGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+ VL P+ +P + +G+ G ++ V+ L V+ Sbjct: 121 NAT-NQVVLGNGG-PVSVPPGAQ-ITIGKDGTVTALTPGDPPTAVVTIDQLKLVNPDPQS 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P + VT+ LE SN N + M MI ++F T L+ Sbjct: 178 ITRGDDGLFRTADGNPADADPTVTLAPASLEGSNVNPVSAMVSMITNARQFQMQTQLLQN 237 Query: 230 NEKSMLEA 237 +K+ A Sbjct: 238 ADKNDQSA 245 >gi|114570497|ref|YP_757177.1| flagellar basal body rod protein FlgG [Maricaulis maris MCS10] gi|114340959|gb|ABI66239.1| flagellar basal-body rod protein FlgG [Maricaulis maris MCS10] Length = 261 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 101/260 (38%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A + + +++N++N +T GF+ + +F +++ + S Sbjct: 1 MRALTTAATGMQAQQLNVEVISNNLANMNTTGFKRQRAEFQDLLYQNVQQMGAASSDAGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + Y E G+ +TG D A+ G+ +F ++ P G TR G F Sbjct: 61 IVPTGVQVGLGVQTASIYRITEQGALSNTGNPFDLAVSGEGYFRVQMPDGSDGFTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 V+ DG LV++ G Y V I IP + +G++ + + + L Sbjct: 121 AVSGDGELVTSEG-YTVAPG----IAIPNGARQIEINIQGQVQVQIDGQTDMQTVGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + TP G +++GF+E SN NS+ E+ +I Sbjct: 176 ATFFNQAGLEAIGGNLFLETAASGSASLGTPGSPGFGD-IQQGFVETSNVNSVSEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + +I +++ M Sbjct: 235 QAQRAYEMNARVITASDEMM 254 >gi|320107042|ref|YP_004182632.1| flagellar basal-body rod protein FlgG [Terriglobus saanensis SP1PR4] gi|319925563|gb|ADV82638.1| flagellar basal-body rod protein FlgG [Terriglobus saanensis SP1PR4] Length = 262 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 101/266 (37%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + L T+A+N++N+ T GFR +++F ++V + Sbjct: 1 MIRALYTAASGMSAQQANLDTIANNLANSATSGFRRRRLQFEDMVYQNLVTPGSAETTQT 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 + + G F TG + D A++G +F + P G TR G F Sbjct: 61 TSAGLQIGLGTKSVASEVIMTQGDFNQTGNQYDLAIQGQGFFQVIRPDGTLAYTRAGSFP 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLY 161 G L + +G D+ + I IP + G ++ G + T+ L Sbjct: 121 PNGQGQLATVNG-----DLLTPAISIPANATSVTISAYGVVTAAVPGSTTGTQLGTIQLA 175 Query: 162 SVDMSQGFVRRENSGISPNIPPT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G + P + P + T+++ +LE+SN + + E QM+ Sbjct: 176 TFPNPGGLNSLGGNLFQPTLASGNAITDLPGGNSGMGTLQQTYLENSNVDVVEEFVQMVM 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + S + +I + M I + Sbjct: 236 AQRAYESNSKVIHVADD-MYSQINGL 260 >gi|262273528|ref|ZP_06051342.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] gi|262222506|gb|EEY73817.1| flagellar basal-body rod protein FlgF [Grimontia hollisae CIP 101886] Length = 243 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 15/239 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + +A+N++N +T GFR V I+ + + Sbjct: 1 MDKLLFTAVSGATRVITAQQVLANNLANVNTDGFRADIGLAKSV--EIQGKGLETRTLTG 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASG 119 G + G+ T LD A+ G+ +FA++ G TR G F + ++G L+ G Sbjct: 59 IGSTWSDFTPGALKRTDNPLDVAIRGNGFFAVQVGEDGEAYTRAGAFHLNENGDLML--G 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRE 173 PVL PI IP+ +++ +G+ G IS + + + L + +Q +R+ Sbjct: 117 DRPVLGDGG-PIAIPEHEKLM-IGQDGTISVVTAGSAAVQEVGKLKLVKPEPNQ--LRKG 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P++ GVTV G+LE SN N++ + + I L++ F ++ E+ Sbjct: 173 EDGLFRTYNGEPVDADQGVTVAVGYLESSNVNAIDALVKNIDLSRNFEFQIKMMKTAEE 231 >gi|170694393|ref|ZP_02885547.1| flagellar basal-body rod protein FlgF [Burkholderia graminis C4D1M] gi|170140816|gb|EDT08990.1| flagellar basal-body rod protein FlgF [Burkholderia graminis C4D1M] Length = 252 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 15/252 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI----DQKI 56 M ++ ++ + VA+N++N T GFR F V + + + Sbjct: 1 MDRLIYTAMSGSTQALEQQAIVANNLANASTTGFRAQLATFRAVPMSFGDGSSINDNTTR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +FV S G TG LD A+EG W A+++ G TR G V +G LV Sbjct: 61 TFVLSSTPGADYTPGPIQQTGNPLDVAIEGPGWLAVQTADGNEAYTRAGNLHVDQNGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+ VL PI +P + +G G ++ V+ L V+ Sbjct: 121 NAT-NQVVLGNGG-PISVPPGAQ-ITIGHDGTVTALTPGDPPTAVVTIDQLKLVNPDPQT 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P + V V LE SN N + M MI ++F T L++ Sbjct: 178 LTRGDDGLFRTADGNPADADPAVAVAPASLEGSNVNPVSAMVSMITNARQFQMQTKLLES 237 Query: 230 NEKSMLEAIRNI 241 +K+ ++ + Sbjct: 238 ADKN-DQSANQL 248 >gi|225871945|ref|YP_002753399.1| flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] gi|225791437|gb|ACO31527.1| flagellar basal-body rod protein FlgG [Acidobacterium capsulatum ATCC 51196] Length = 262 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + L T+A+N++N+ TVGFR +++F +++ S A Sbjct: 1 MIRALYTAASGMSAQQMNLDTIANNLANSSTVGFRERQLQFQDMIYQNLVTPGAAQSQQA 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 L G T LD A++G +F ++ P G TR G F Sbjct: 61 VSAGLQIGLGTKSAATELIMTQGDLNQTNNPLDLAIQGQGFFQVQRPDGTLAYTRAGNFY 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLY 161 + + G +V G + I +PQ + + G + Q + + + L Sbjct: 121 LNNQGQVVDPQGDLLI-----PNITVPQNATAVTITQYGVVNATLPGQQNPQQLGQIQLA 175 Query: 162 SVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ + P T+++G+LE+SN + + QM+ Sbjct: 176 TFVNPGGLESTGSNDYLATLSSGNAVLGNPGGQQGLGTLQQGYLENSNVDVVGAFVQMVL 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + S + +I + M + N+ Sbjct: 236 AQRAYESNSKVIKAAD-GMYSEVNNM 260 >gi|116626491|ref|YP_828647.1| flagellar basal body rod protein [Candidatus Solibacter usitatus Ellin6076] gi|116229653|gb|ABJ88362.1| flagellar basal body rod protein [Candidatus Solibacter usitatus Ellin6076] Length = 241 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 5/243 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-FV 59 M I + A + L +A+N++N T G++ + +F + A + D +S Sbjct: 1 MDPLTAIAASGLRARMESLDLLANNVANASTGGYKADR-EFYSLYTAPEAAGDGSLSTMP 59 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + ++ G +TG LD A+ G +F + P G + TR+G F++ DG L +A G Sbjct: 60 VIERPWVDHSQGILHTTGNALDVAISGKGFFTVNGPSGPLYTRNGSFRLAADGKLTTADG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 YPV D + + Q + G ++Q G ++ + + + G ++ S Sbjct: 120 -YPVRDPQGTALTL-QTTRPVEIARDGTVTQDGAIVGKLEIVDFTSTAGL-SKQGSNYFR 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + ++++G LE SN S +++ + ++F + + AI Sbjct: 177 ADPSLKSAPAADASLQQGSLEASNTGSAEAAVRLVSVLRQFEMMQKAVSIGNDMSKRAIE 236 Query: 240 NIA 242 +A Sbjct: 237 EVA 239 >gi|39936961|ref|NP_949237.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris CGA009] gi|192292789|ref|YP_001993394.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris TIE-1] gi|39650818|emb|CAE29341.1| putative flagellar basal-body rod protein flgg (distal rod protein) [Rhodopseudomonas palustris CGA009] gi|192286538|gb|ACF02919.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris TIE-1] Length = 262 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 97/264 (36%), Gaps = 31/264 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T GF+ +F +++ + + S Sbjct: 1 MRALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G+ TG +LD A+ G+ +F ++ P G TRDG F Sbjct: 61 ILPVGVDIGGGVKTVGTPRLMTQGTLSPTGNDLDLAVRGEGFFKIQMPDGTFAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G +V+A+G PV I +P V G++S VI +GL Sbjct: 121 TKDNTGRMVTANGN-PVQPT----ITVPNGATSITVAANGQVSVTISGSTTPTVIGQIGL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + ++ TP + ++ + + LE +N + E+ +I Sbjct: 176 TRFINKAGLQPQGDNLFIETPASGTPQDGIASADGLGDIMQKTLEMANVEVVTEISDLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + ++ ++ + Sbjct: 236 AQRAYEMNAKVVSSADQMLQSTSN 259 >gi|94969950|ref|YP_591998.1| flagellar basal-body rod FlgG [Candidatus Koribacter versatilis Ellin345] gi|94552000|gb|ABF41924.1| Flagellar basal-body rod FlgG [Candidatus Koribacter versatilis Ellin345] Length = 263 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 110/268 (41%), Gaps = 32/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKIS 57 M + A + L +A+N+SN T GFR +++F +++ + + + Sbjct: 1 MFRALYTAATGMTAQQLNLDNIANNLSNASTAGFRARRLQFQDLMYQNMVVPGSAATQQT 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 VASG + + G F STG LD A++G +F + P G TR G+F Sbjct: 61 TVASGLQVGLGTRPTASETLQTQGEFESTGNPLDIAIQGQGFFQVLLPDGTTGYTRSGQF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G++V++ G + IP + ++G G ++ + + + ++ + Sbjct: 121 HLDAQGNVVTSDGN-----QLQPSLTIPADAQTISIGADGTVTVTQPGQTQAQQVGSIQV 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 S G + TP T+++G LE +N + + E QMI Sbjct: 176 ASFANPGGLNSIGKNLFLATTASGDPTIGTPGGAEGAGTLQQGVLEQANVSVVDEFIQMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + ++ + ML+ + +A Sbjct: 236 LAQRSYEANSKVVTAANE-MLQNLNTMA 262 >gi|254500847|ref|ZP_05112998.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] gi|222436918|gb|EEE43597.1| flagellar basal-body rod protein FlgG [Labrenzia alexandrii DFL-11] Length = 260 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 95/258 (36%), Gaps = 32/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T G++ + F +++ + + S Sbjct: 1 MRALYTAATGMKAQEYNVEVISNNVANMRTTGYKKQRADFQDLLYQNLRRMGTETSDDGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V GS +TG ELD A+ G+ +F ++ P G +RDG F Sbjct: 61 IVPTGIQIGTGVKLASTGRVMSQGSMENTGKELDIAIRGEGFFQIQLPGGATGYSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-----IATMGLY 161 + +G LV+ G I IP+ + G++ + + + L Sbjct: 121 ERDQNGQLVTIDGY-----QLDPNITIPENTRDLTIAPSGKVQGVDEAGATVDLGQIQLA 175 Query: 162 SVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G + E P ED G T ++ FLE +N +++ E+ +I Sbjct: 176 RFVNKAGLEAIGDNLFLETDASGAPQTGNPNEDGYGST-QQFFLEMANVDAVTEIADLIS 234 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 235 AQRAYEMNSKVIQAADQM 252 >gi|183220929|ref|YP_001838925.1| flagellar basal-body rod protein FlgG [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911025|ref|YP_001962580.1| endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775701|gb|ABZ94002.1| Endoflagellar distal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779351|gb|ABZ97649.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 286 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 110/285 (38%), Gaps = 52/285 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS---EVVGAIKNDIDQKIS 57 M G ++ + R+ VA+N++N D GF+ F E++ ++ + Sbjct: 1 MLRGLYTGANGMISQQVRMDVVANNLANVDKTGFKKDTTVFKTFPEMLLHRYSEDGIGKT 60 Query: 58 FVAS----------------GKEYLSKEVGSFISTGTELDFALEGD------AWFALESP 95 + S + Y E G+ T D ++ A+F + + Sbjct: 61 PMGSFDTSPVVGKLGFGAEVNEVYTRFEQGAVKKTDNIFDLMVQDQPGMEKPAFFTVLTN 120 Query: 96 RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV- 154 +G LTR G F + +G +V+ G +P+L PIQ+ Q + F V E GEI K+ Sbjct: 121 QGERLTRSGSFVLDKNGFVVTPQG-FPLLGEKG-PIQVNQGN--FLVKENGEIYINAKLG 176 Query: 155 -------------------IATMGLYSVDMSQGFVRRENSGISPN---IPPTPLEDLSGV 192 + + + +V+ + + +S + PT +L Sbjct: 177 TAPKDGTNFSENRFEEPVLLDKLKIRTVENPRHLDKVGDSFYADTPESGEPTAFPELLAP 236 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 V +G+LE SN + + EM MI + + + + + + + + Sbjct: 237 QVLQGYLEASNVSVVTEMVDMIEVNRAYEANSKTMQTQDSLLGRL 281 >gi|238916190|ref|YP_002929707.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] gi|238871550|gb|ACR71260.1| flagellar basal-body rod protein FlgG [Eubacterium eligens ATCC 27750] Length = 277 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 108/276 (39%), Gaps = 36/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDI 52 M S + ++ + + T+A+N++N +T+G++ + +F ++ D Sbjct: 1 MMRSLWTAASGMMSQQTSVDTIANNLANVNTIGYKQEQTQFKSLLYQNLQAKTTSANGDD 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRF 106 + V G + G+ +T + DFA++G+ +FA+ + TR+G F Sbjct: 61 KPVGAQVGLGSRVSAVTSIYTQGALNATDSLTDFAIDGNGFFAVRDTNTGDTVYTRNGHF 120 Query: 107 K--VTDDGSLVSASGKYPVLDMASVPIQIPQKD-------EIFNVGEKGEI-----SQKG 152 +G ++S S YPVL I + Q + + G + S Sbjct: 121 TWATATEGVMLSTSEGYPVLSADGAEIVLGQDANGEDYKTNLITIDTDGNLLYPDESNNP 180 Query: 153 KVIA-TMGLYSVDMSQGFVRRENSGISPN-IPPTPL-----EDLSGVTVKRGFLEDSNAN 205 I +GLY G + +S + PL E ++++ +LE SN Sbjct: 181 APIGIKIGLYQFSNPAGLDKLGSSYLGETEASGVPLNEDYDEVGKKSSLRQSYLEASNVQ 240 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + I ++ M +A N+ Sbjct: 241 VATEMVNLITAQRAYELCSKAITTSDTMMEQA-NNL 275 >gi|170755157|ref|YP_001782254.1| flagellar basal body rod protein FlgG [Clostridium botulinum B1 str. Okra] gi|169120369|gb|ACA44205.1| flagellar basal body rod protein [Clostridium botulinum B1 str. Okra] Length = 263 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 115/263 (43%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M + + +A + +L ++++N++N +TVG++ V F E+V + Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 +I A+ + + G ++TG + D A++G +F + P G R G F V Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMPDGNYAYERSGNFVVD 120 Query: 110 DDGSLVSASGKY---PVLDMASVPI--QIPQKDE-IFNVGEKGEISQK-----GKVIATM 158 +G LV +G + I +I + + N+ E G IS K K++ + Sbjct: 121 RNGMLVDENGNRLEIQLQQPEGSQILNRIGEFSKNNINIAEDGSISVKDIDGINKMVGKI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +Y+ S FV + P + + V++ +GFLE+SN ++ EM +MI + Sbjct: 181 NIYNAVGSDAFVSIGRNLYIPQ-EGVNVFANNDVSILQGFLENSNVDAGKEMTEMIITQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + I ++ M + N+ Sbjct: 240 AFELSSRGIKTADE-MWGIVNNL 261 >gi|37360908|dbj|BAC98362.1| flagellar basal-body rod protein [Burkholderia glumae] Length = 251 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 33/258 (12%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------------QKISF 58 A + ++ +++N++N T GF+ + F +++ Q + Sbjct: 1 MNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQTELPSGLQLGTG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 V G+ TG D A+ G +F + P G TRDG F+ + G LV++ Sbjct: 61 VQQVATERLYTQGNLQQTGNSRDVAINGQGFFQVLMPDGTTAYTRDGSFQANNQGQLVTS 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVR 171 +G Y VL I +PQ + +G G ++ I +M L + +G Sbjct: 121 AG-YQVLPA----ITVPQNAQSLTIGADGVVTVTQPGSTNAVQIGSMQLATFINPEGLNA 175 Query: 172 RENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + + TP + +G ++ +G++E SN N E+ MI + + + Sbjct: 176 LGQNLFAETTSSGAPNVTTPGLNGAG-SLNQGYVESSNVNVXQELVNMIQTQRAYEINSK 234 Query: 226 LIDENEKSMLEAIRNIAS 243 + +++ ML+ + + S Sbjct: 235 AVTTSDQ-MLQTVTQMKS 251 >gi|148256791|ref|YP_001241376.1| flagellar basal body rod protein FlgF [Bradyrhizobium sp. BTAi1] gi|146408964|gb|ABQ37470.1| putative flagellar basal-body rod protein (flgF or flgG) [Bradyrhizobium sp. BTAi1] Length = 254 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 14/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + IGL+ Q+ LE++L VA+N++N +T GF+ + F E + + + +K Sbjct: 1 MENALLIGLSRQMVLERQLDVVANNVANVNTNGFKADQQLFEEYLSSKAHEDNFPGASRK 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V Y GS TG LD A+ G+ + +++ G TRDG + + G LV Sbjct: 61 VSYVQDRGTYRDFSQGSAQHTGNALDVAISGNGFLTVQTAAGERYTRDGNLHMNNLGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+G VL PI + D N+ G ++ + + L S Q Sbjct: 121 TAAGDL-VLGTGG-PIVLQPTDHDINISPDGTVTVVEGVNRTDSIRGKLKLVSFADPQQA 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ N+ S TP D + TV++G++E SN +++ EM +M+ + + + + ++ Sbjct: 179 QKQGNNLYSAAGGVTPQPD-TKSTVQQGYIEKSNVSAVGEMSRMVEVMRSYTQVANMLQV 237 Query: 230 NEKSMLEAIRNIA 242 AI +A Sbjct: 238 QSDMRKNAIEKLA 250 >gi|75675314|ref|YP_317735.1| flagellar basal body rod protein FlgG [Nitrobacter winogradskyi Nb-255] gi|74420184|gb|ABA04383.1| Protein of unknown function DUF1078 [Nitrobacter winogradskyi Nb-255] Length = 262 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 99/263 (37%), Gaps = 31/263 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T G++ + F +++ + + S Sbjct: 1 MRALYTAATGMAAQELNVQVISNNIANLRTTGYKKQRAAFQDLIYDHVRRVGAQASTQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + G+ TG +LD A+ G+ +F ++ P G TRDG F Sbjct: 61 IMPVGIDLGGGVKTVGTPRQMSQGTLSQTGNDLDIAIRGEGFFKIQMPDGTFQYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ + G +V+A G PV I IPQ + +G++S V+ +GL Sbjct: 121 QMDNMGRIVNAQGN-PVQPT----ITIPQNSAGITINAQGQVSVTLPGQTTPTVLGQIGL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ P +D +++ LE +N + E+ +I Sbjct: 176 TRFINKAGLQPVGDNNFKETPASGPFQDGIANLDGFGDMQQSNLEQANVEVVSEISDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAI 238 + + +I ++ + A Sbjct: 236 AQRAYEMNAKVISAADQMLQSAA 258 >gi|329849714|ref|ZP_08264560.1| flagellar basal-body rod protein FlgG [Asticcacaulis biprosthecum C19] gi|328841625|gb|EGF91195.1| flagellar basal-body rod protein FlgG [Asticcacaulis biprosthecum C19] Length = 263 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 34/268 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + A + + +++N++N +TVGF+ + +F +++ + Sbjct: 1 MRALRTATTGMAAQQLNVEVISNNIANMNTVGFKKQRAEFQDLLYQNIERMGSQSSDAGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q + V +G Y + GS T + D A+EG +F + P G TR G F Sbjct: 61 VVPTGIQVGAGVKAGSVYRIMQQGSMTLTQNQYDVAIEGKGYFQILMPSGETAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGK----VIATMGL 160 V D G LV+ G + IPQ ++ + G+I +Q+G+ + + Sbjct: 121 SVDDQGRLVTEDGYLV-----QPSVTIPQDAIDVSISKTGQIQATQQGQTAPTTVGQLQT 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E+ TP + G T+ +G+ E SN +++ E+ +I Sbjct: 176 ATFFNEAGLDAIGDNLFLESGASGAPNVSTPGDVGFG-TLLQGYTEASNVDAVGEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + +I ++ ML+ IA Sbjct: 235 VAQRAYEMNSKVITTADQ-MLQTASQIA 261 >gi|311992327|gb|ADQ26737.1| proximal rod protein [Aeromonas hydrophila] Length = 247 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 107/236 (45%), Gaps = 10/236 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 I ++ L+ ++N++N +T GF++ + + + A + ++ F + + Sbjct: 4 LYIAMSGAKESMNSLAVRSNNLANANTTGFKSD-FEQARSMQAFGEGLPTRV-FAMAERP 61 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASGKYPV 123 + + G ++TG +LD A++G W A++ P G TR G +++ G+L +++G V Sbjct: 62 GQNLQHGMLMTTGRDLDVAVDGQGWIAVQDPKGGEAYTRMGNLQLSATGNLQTSTG-LNV 120 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT------MGLYSVDMSQGFVRRENSGI 177 +D PI +P E + G IS + + A + V+ + V + G+ Sbjct: 121 VDDGGQPIVLPLPMEKIEINRDGTISGRPEGAAANLPENFQRIKLVNPAVDAVEKGQDGL 180 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + V + G LE SN N + EM +I L ++F + ++ E++ Sbjct: 181 FRRKDGQNEAASATVGLIAGSLEGSNVNVVDEMTNLIRLQRQFETQVKIMKTAEEN 236 >gi|119384847|ref|YP_915903.1| flagellar basal body rod protein FlgG [Paracoccus denitrificans PD1222] gi|119374614|gb|ABL70207.1| flagellar basal-body rod protein FlgG [Paracoccus denitrificans PD1222] Length = 261 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 109/264 (41%), Gaps = 31/264 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID----QKIS 57 + I + A + R+ +++N++N T G+ + +F+++ + Sbjct: 1 MRALQIAASGMSAQQMRVDVISNNLANMSTTGYNARRAEFADLQYQQATRPGTLTATNGA 60 Query: 58 FVASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V +G + + G+ + T +LD A+EG+ + + P GI TRDG Sbjct: 61 MVPAGVQLGLGVRPASVTVMLAQGTPVQTNGDLDIAIEGNGYLEVTLPSGISAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K + +G +V++ G V D I IP+ + G++ + + + + L Sbjct: 121 KRSAEGQVVTSEGYPLVPD-----ITIPEDARSIAINADGQVFAYFDDRVEPENLGQITL 175 Query: 161 YSVDMSQGFVRRENSG-ISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + +G ++ + P G T++ GFLE+S+ + + E+ ++I Sbjct: 176 ANFVNGKGLEAVGSNMFLETPASGAPQVAAPGQEGLGTIRAGFLEESSVDPVREIAELIK 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + ++ Sbjct: 236 AQRGYELNSKVITAADQMLGTTVQ 259 >gi|283780137|ref|YP_003370892.1| flagellar basal-body rod protein FlgG [Pirellula staleyi DSM 6068] gi|283438590|gb|ADB17032.1| flagellar basal-body rod protein FlgG [Pirellula staleyi DSM 6068] Length = 266 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 30/265 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKISFV 59 + +L+ +L +A+N++N +T GF+ + F ++ DQ+ + Sbjct: 4 QTLYTAATGMESLQTKLDVIANNLANVNTTGFKRGRANFEDLFYRQEKLPGSQDQQQNLT 63 Query: 60 ASGK----------EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 A+G + G+F TG +LD A+EG + ++ P G + +R G + Sbjct: 64 ATGTAIGLGSRVSSVQTNFNQGAFQETGGQLDVAIEGQGFLRVQDPSGITVYSRAGNLSI 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYS 162 G LV G + + PQ ++ G + Q + IA + L + Sbjct: 124 NAQGQLV--MGSAQTGRLIDPNVSFPQDTMAISITADGRVLVRQFGQQDLQQIAQIQLAT 181 Query: 163 VDMSQGFVRRE------NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G ++ I P GV +++G LE SN + E+ +I Sbjct: 182 FPNPEGLLKLGENLYSQTDASGQEIVDNPGNQGIGV-LRQGMLEASNVEPVQELIDLITT 240 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + F + I ++ +L+ I N+ Sbjct: 241 QRSFELNSQAIQAGDQ-ILQLISNL 264 >gi|152988763|ref|YP_001349649.1| flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PA7] gi|150963921|gb|ABR85946.1| flagellar basal-body rod protein FlgF [Pseudomonas aeruginosa PA7] Length = 249 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 21/245 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ + A+N++N T GFR + + + D F Sbjct: 1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSM--QVFGDSFPARVFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS TG ELD A++GD + A+++P G R + G L + G Sbjct: 59 SERPGTDFSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDAVGMLRTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PVL PI +P + E +G+ G IS + V+ + L + ++ Q + Sbjct: 119 -LPVLGNGG-PIAVPPE-EKVEIGQDGTISIRALGENPNVVAVVDRIKLVNPNLKQ--ME 173 Query: 172 RENSGISPNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P P E + V V GFLE SN N++ EM ++ L+++F ++ Sbjct: 174 KGTDGLLHYKP-QPGEQVPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMM 232 Query: 228 DENEK 232 E Sbjct: 233 RTAED 237 >gi|292669970|ref|ZP_06603396.1| flagellar basal-body rod protein FlgG [Selenomonas noxia ATCC 43541] gi|292648382|gb|EFF66354.1| flagellar basal-body rod protein FlgG [Selenomonas noxia ATCC 43541] Length = 275 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 98/278 (35%), Gaps = 42/278 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND------ 51 M I + + + +A+N++N T G++ + +F ++ ND Sbjct: 1 MWRGLYIAASGMITETKHTDMIANNLANAATTGYKRDDMAIREFEPMLLRRINDYSADAD 60 Query: 52 ----------------IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP 95 + + A + G+ +TG DF + G+ +F + +P Sbjct: 61 VTSFKGFRVDGLGAPRVGRLGLGSAVDEIATDHIQGALQTTGNTYDFGISGEGYFVVNTP 120 Query: 96 RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------ 149 +G TRDG +K+ D +V+ G L + I + + G +S Sbjct: 121 QGPRYTRDGTWKLDSDRRMVTTDGY---LLADGITIGENAPSDSITISGDGRVSYREAGQ 177 Query: 150 QKGKVIATMGLYSVDMSQGFVRRE------NSGISPNIPPTPLEDLSGVTVKRGFLEDSN 203 + + + L G + I P D +G T+ +G LE SN Sbjct: 178 TQQQEAGQITLARFVNPAGLTAIGKNLFVVSDASGEAIESNPGVDGAG-TLTQGTLEMSN 236 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + EM MI + + S + I SMLE + Sbjct: 237 VQIVEEMVNMIVSQRAYESNSKAI-TTSDSMLEIANTL 273 >gi|51246532|ref|YP_066416.1| flagellar basal-body rod protein (FlgF) [Desulfotalea psychrophila LSv54] gi|50877569|emb|CAG37409.1| related to flagellar basal-body rod protein (FlgF) [Desulfotalea psychrophila LSv54] Length = 248 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 9/249 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ L+ +Q +ST+++N++N +T GF+ + F ++ + + + I++ Sbjct: 1 MVSGKYSALSGALSRQQAISTISNNLANVNTTGFKKNTLSFESILNNQQQNSAEGINYSR 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 GK + G+F T +D A++G A+F ++ G + TR G F + D L + G Sbjct: 61 VGKSSTDFKQGTFKPTENPMDLAIQGKAFFKVQGVNGALYTRRGDFGLRGDNVLTTRHG- 119 Query: 121 YPVLDMASVPIQIPQKDEI-FNVGEKGEISQKGKV-----IATMGLYSVDMSQGFVRREN 174 P+L A I IP + GE G I GK + +GL+ +D + Sbjct: 120 LPILSEAGGEITIPDAETSKIAFGEDGTIYILGKQGRREEVGKIGLFEIDDPSLLKNAGD 179 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + S ++ +G LE +N N + M Q+I + F ++ I Sbjct: 180 TSFSLEQGGQETISQES-SLLQGNLEVANVNMVAAMAQLIDNQRAFETLNKAIKSYSTIS 238 Query: 235 LEAIRNIAS 243 + + S Sbjct: 239 DQQ-DKLGS 246 >gi|171059411|ref|YP_001791760.1| flagellar basal-body rod protein FlgF [Leptothrix cholodnii SP-6] gi|170776856|gb|ACB34995.1| flagellar basal-body rod protein FlgF [Leptothrix cholodnii SP-6] Length = 241 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A QR T+A+N++N TVGFR F V ++ D ++ Sbjct: 1 MDRRIYLSMGGAKATMQRQETLANNLANVSTVGFRAEMQAFRAV--PVRGDGATTRAYAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G+ +TG LD A++G+ W A++S G TR G V DG LV ++G Sbjct: 59 ETTTGYNPAQGNITATGRNLDVAMQGNGWLAVQSLDGTEAYTRAGALNVMPDGLLVGSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRREN 174 PVL PI +P E + G IS + + + L + + ++R + Sbjct: 119 -LPVLGDGG-PITLPANAE-VQIAGDGTISARAANGGITPVGKLKLVTPEAP---LKRGD 172 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ L ++ G LE SN +++ M MI ++F + E+ Sbjct: 173 DGLFRAADGD-LPADPNARLQDGALEGSNVSAIETMVAMISAARQFEQQMKSMQTTEQDE 231 Query: 235 LEAIR 239 +A + Sbjct: 232 KQAAQ 236 >gi|86750896|ref|YP_487392.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris HaA2] gi|86573924|gb|ABD08481.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris HaA2] Length = 262 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 94/264 (35%), Gaps = 31/264 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T GF+ +F +++ + + S Sbjct: 1 MRALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + G+ +TG +LD A+ G+ +F ++ P G TRDG F Sbjct: 61 ILPVGVDIGGGVKTVGTPRLMTQGTLSTTGNDLDLAIRGEGFFKIQMPDGTFSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G +V+A+G I IP V G++S V+ +GL Sbjct: 121 TTDNTGRIVTANGN-----PLQPTITIPNGATSITVATNGQVSVTVSGATAPTVLGQIGL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 G + ++ P +D + + LE +N + E+ +I Sbjct: 176 TRFINKTGLQPQGDNLFIETQASGPPQDGIATADGLGDMMQKTLEQANVEVVTEISDLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + ++ ++ + Sbjct: 236 AQRAYEMNAKVVSAADQMLQSTSN 259 >gi|1086561|gb|AAB68968.1| FlgG [Agrobacterium tumefaciens] gi|2459714|gb|AAB71790.1| FlgG [Agrobacterium tumefaciens] Length = 262 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 31/258 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T G++ + +F++++ + N +Q Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQA 60 Query: 56 IS--------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I V + G+ I TG +LD A+ G WF R L R G F Sbjct: 61 IVPEGANIGLGVQTSAVRNIHTQGNLIETGNKLDVAIIGQGWFPDRGRRWFDALQRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGL 160 DG+LV+ G Y V+ I IP + + G+++ + + + + Sbjct: 121 NKNADGNLVTVDG-YNVIPN----INIPTDAQDITITRTGQVTARIGNAADFTQLGQLTI 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ S P+ +D S VK+ +LE SN +++ E+ +I Sbjct: 176 ANFANEAGLKPLGDNLFSQTPASGAPVVGVPDDPSYGYVKQSYLEGSNVDAVKEITDLIT 235 Query: 216 LTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 AQRAYEMNSKVITTADEM 253 >gi|78358199|ref|YP_389648.1| flagellar basal-body rod protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220604|gb|ABB39953.1| flagellar basal-body rod protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 260 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 112/259 (43%), Gaps = 20/259 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFV 59 MQ S L L E RL+ +A+N++N +T G++ + F + + +D + + I V Sbjct: 1 MQDSMYSALFGALTNEHRLNNIANNLANVNTTGYKRDVLAFKDTFLSFAHDEVMEPIPNV 60 Query: 60 ASGKEY---------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 S K + GS TG LD A+ GD +F + +P G TR+G Sbjct: 61 RSKKMFPEPIHIAKPRIALAKTDFSQGSLKLTGGTLDMAVHGDGFFKVRTPDGEFYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F+ T DG LV+ G +PVL IQIP + V E G I G+ I + + ++D Sbjct: 121 NFRQTSDGQLVTQQG-WPVLGAGGD-IQIPPRA-NLTVAENGTIYADGEEIGQVQVVTLD 177 Query: 165 MSQGFVRRENSGISPNIPPTPLE-DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 ++ ++ E + V +GFLE +N + EM MI ++F + Sbjct: 178 NLDALEKQGSNLFRLREGAEAQEVPVENPVVLQGFLETANVEVVTEMVNMIEANRQFEAY 237 Query: 224 TTLIDENEKSMLEAIRNIA 242 ++ + A + Sbjct: 238 QKIMQTTDAVDKMATTQVG 256 >gi|325111113|ref|YP_004272181.1| flagellar basal-body rod protein FlgG [Planctomyces brasiliensis DSM 5305] gi|324971381|gb|ADY62159.1| flagellar basal-body rod protein FlgG [Planctomyces brasiliensis DSM 5305] Length = 267 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 34/267 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKI 56 + + + A +L +A+N++N+ T GF+ + +F ++ + Q Sbjct: 4 RTLHSAASGMEASLFQLDVIANNLANSGTTGFKRSRAEFEDLFYEHFKLPGAQPAPQQTP 63 Query: 57 SFVASG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKV 108 + +A G + GS TG LD A+ GD +F ++ P G TR G F Sbjct: 64 TGIAVGLGAAIRATQVDFTEGSLNQTGNSLDIAIMGDGFFQIQDPTGGDPYYTRAGTFTK 123 Query: 109 TDDGSLV--SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 +G++V SA P+ I IP ++ GE+ S + L Sbjct: 124 NSEGTIVMSSAQTGRPLEPS----INIPPTAVNISITSNGEVWYQEAGSSTMTQAGQIQL 179 Query: 161 YSVDMSQGFVRRENSGISPNIPPT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++G ++ + + P +D +G T+++GFLE SN + E+ ++I Sbjct: 180 ARFVNNEGLIQMGENLYRASDASGVATISIPGQDGAG-TLRQGFLETSNVEPVRELVELI 238 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ML+ + + Sbjct: 239 KTQRNVELNSEAMKAGDQ-MLQLVNGL 264 >gi|322432976|ref|YP_004210225.1| flagellar basal-body rod protein FlgF [Acidobacterium sp. MP5ACTX9] gi|321165203|gb|ADW70907.1| flagellar basal-body rod protein FlgF [Acidobacterium sp. MP5ACTX9] Length = 246 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 10/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + A +A L T+A+N++N+ T GFR FS V+ + ++ Sbjct: 1 MDSGLYAACTALMARTDALDTIANNLANSSTGGFRARHTTFSSVLAGSGRPLASQLNEAT 60 Query: 57 -SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 S+ G +L + GS TG++LD ++G + +++ G TR+G +V+ G L+ Sbjct: 61 NSYGLLGGSHLDMQQGSLARTGSDLDVGIDGPGFLTVKTASGNAYTRNGSLQVSTQGQLI 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 +A+G+ PVL PI IP ++ + G IS G + + L + +S Sbjct: 121 TATGE-PVLGENG-PITIP-RNSSVTISADGTISANGAIAGKLKLVEFSATADPQSMGSS 177 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 +P + S V++G LE SN N + + ++I+ + + + + + Sbjct: 178 YY--TVPDKDVVAASKSEVRQGMLEGSNVNPVASVIELINAQRAAEGMRHAMTMIDTEID 235 Query: 236 EAIRN 240 + Sbjct: 236 KTAAQ 240 >gi|115523556|ref|YP_780467.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisA53] gi|115517503|gb|ABJ05487.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris BisA53] Length = 262 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 102/264 (38%), Gaps = 31/264 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-------VGAIKNDIDQ 54 + +A E + +++N++N T F+ + F ++ VGA +D Sbjct: 1 MRALYTAATGMMAQELNVQVISNNIANMRTTAFKKQRAAFQDLIYDHVKRVGAQASDQGT 60 Query: 55 KI-------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + V + G+ +TG +LD A+ G+ +F ++ P G TRDG F Sbjct: 61 ILPVGVDIGGGVKTVGTPRIMTQGTLSTTGNDLDMAIRGEGFFKIQMPDGTYTYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 + G +V+++G I IPQ + +G+++ + ++ +GL Sbjct: 121 TTDNTGRIVTSNGN-----PLQPTITIPQGSSGLTINAQGQVTVIAQGSTTATLLGQIGL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 G ++ + P +D + +++ LE +N ++ E+ +I Sbjct: 176 TRFINKTGLQPIGDNLFTETPASGPPQDGTANADGYGDIQQQTLEQANVEAVTEISDLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + ++ ++ + Sbjct: 236 AQRAYEMNAKVVSAADQMLQSTSN 259 >gi|262273527|ref|ZP_06051341.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] gi|262222505|gb|EEY73816.1| flagellar basal-body rod protein FlgG [Grimontia hollisae CIP 101886] Length = 243 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 32/242 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------------QKISFVASGKEY 65 + +++N++N +TVGF+ +V F ++ K Q + V + Sbjct: 1 MQVISNNLANVNTVGFKQDRVVFEDLFYQTKKQPGAMADQQNEVPGGIQLGNGVRTVGTQ 60 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 G++ +T D A+ G +F +E P G TR+G+F +G +V+A+G V Sbjct: 61 KLMRSGAYQNTQQATDLAIMGGGFFQIEMPDGSTAYTRNGQFHRNSEGMMVTAAGLPLV- 119 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGF------VRR 172 I+IP+ F VG+ G ++ + + I + L + G + R Sbjct: 120 ----PNIEIPENALSFTVGKDGIVNITMPGEAEPQEIGQLTLVNFTNPAGLEGLGGNLFR 175 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 E I P E+ G + + LE SN + + EM MI + + ++ ++ Sbjct: 176 ETGASGAPIEGVPGEEGLGY-LSQYALEGSNVSVVEEMVNMITTQRAYEMNAKVVSSADQ 234 Query: 233 SM 234 + Sbjct: 235 ML 236 >gi|332980934|ref|YP_004462375.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] gi|332698612|gb|AEE95553.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] Length = 264 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 25/264 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------KNDID 53 M + A ++ + + T+A+N++N DT F+ ++ + D + Sbjct: 1 MIQALWTAGAGLISQQYNVDTIANNIANVDTTAFKRNTAHIEDMPYVYKLNPAIRQADNE 60 Query: 54 QKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 + + +G +S G T LD ++G A+FA+ +G + TRDG FK+ Sbjct: 61 GLLPHMGTGARVVSSPKYFAQGPMQQTERNLDLGIDGTAFFAVTDGQGNVFYTRDGNFKL 120 Query: 109 TD----DG----SLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQKGKVIATM 158 T+ DG + +A+G Y +LD I+IP + ++ G + +G IA + Sbjct: 121 TETEGEDGRIHSYITTANG-YWLLDTEGARIEIPAGTIEGDISIDPSGAVMVEGAHIADI 179 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEMGQMIHLT 217 L Q R ++ + P G V++GFLE SN + EM +MI Sbjct: 180 ALVEFTNPQALETRGDNLYAVTDNVGPNYLTDGDSKVRQGFLEASNVDIADEMARMIRAQ 239 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + + ++ ++ M+ +I Sbjct: 240 RAYQLNARVLQTADE-MIGLANSI 262 >gi|330809230|ref|YP_004353692.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377338|gb|AEA68688.1| Flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 257 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 114/262 (43%), Gaps = 28/262 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S +I + A + + ++++N++N T+G++ +V F ++V + D Sbjct: 1 MIDSLSIASSGLTANQAWIDSISNNVANMQTIGYKRSQVDFHDMVREVGTRDDGGGMTES 60 Query: 56 ---ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 + + + + G+ +G LD A++GD +F + P G TR GRF + + Sbjct: 61 LLTGAGIQASQPSQVFSPGTVRESGNALDLAIQGDGFFEVALPTGELAYTRAGRFHLDSE 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKV--IATMGLYSVDM 165 G L G+ D +++P + + G I++ G++ + + L Sbjct: 121 GQLAMPDGQTLTAD-----LRVPPDARNLVIKQNGEVQATITETGEIINVGQVQLAKFAS 175 Query: 166 SQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 ++ + + P I P D GV + +G++E SN N + EM ++ + Sbjct: 176 AEALTKLSDGLYRPTQASGEAIYAEPGRDGQGV-LLQGYVEMSNVNLIDEMSGLVLAQRA 234 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + L+ +++ +LE I N+ Sbjct: 235 YQMNARLLQASDQ-ILETINNL 255 >gi|91976161|ref|YP_568820.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB5] gi|91682617|gb|ABE38919.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB5] Length = 262 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 99/264 (37%), Gaps = 31/264 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T G++ F +++ + + S Sbjct: 1 MRALYTAATGMAAQELNVQVISNNIANMRTTGYKKQTAAFQDLIYDHVRRVGAQASDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + G+ TG +LD A+ G+ +F ++ P G +RDG F Sbjct: 61 ILPVGVDIGGGVKTVGTPRMMGQGTISPTGNDLDIAIRGEGFFKIQMPDGTFTYSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G +V+++G PV I IP + +G+++ ++ +GL Sbjct: 121 TTDNTGRIVTSNGN-PVQPT----ITIPSGASGITINAQGQVTVNVPGSTTPVLLGQIGL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 G + ++ + P +D + T +++ LE +N + E+ +I Sbjct: 176 TRFINKTGLLPIGDNLFTETPASGPPQDGTANTDGFGDMQQKALEQANVEVVNEISDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + ++ ++ + Sbjct: 236 AQRAYEMNAKVVSAADQMLQSTSN 259 >gi|160896078|ref|YP_001561660.1| flagellar basal-body rod protein FlgF [Delftia acidovorans SPH-1] gi|160361662|gb|ABX33275.1| flagellar basal-body rod protein FlgF [Delftia acidovorans SPH-1] Length = 246 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 95/237 (40%), Gaps = 11/237 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A QR S +A N++N T GFR F V ++ F Sbjct: 1 MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSV--PLQGSGAGTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G TG LD G AWFA++ G TR+G F+V+ +G LV+++G Sbjct: 59 EATSGYVDTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 + VL PI IP + +G G ++ Q + + L + VR N Sbjct: 119 Q-AVLSDGGGPIDIPPE-STITLGSDGTLTAKTGNQLPVAVGRVKLATPPEDTALVR-GN 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G+ PL + + G +E SN NS+ M MI ++F + L+ E Sbjct: 176 DGLFRTGDGDPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAE 232 >gi|116694220|ref|YP_728431.1| flagellar basal body rod protein FlgF [Ralstonia eutropha H16] gi|113528719|emb|CAJ95066.1| flagellar basal body rod protein [Ralstonia eutropha H16] Length = 247 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 14/249 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ + + + V++N++N T FR + V + +F Sbjct: 1 MDRMIYTALSGAKQILDQQAAVSNNLANVSTPAFRAQVNLYRAV--PVVGPEAGTRAFTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G TG LD AL+G+ W +++P G TR G +V DG + + SG Sbjct: 59 ASTPGADMRAGPLTYTGRTLDVALQGNGWLVVQAPDGTEAYTRAGALQVAQDGQVQTISG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV------DMSQGFVRRE 173 PV+ P+ +P + +G G I+ +G A+ GL V + + R Sbjct: 119 -LPVMGDGG-PLAVPPGSQ-VTIGTDGTITARGPGEASAGLAQVGRLRVVNPPNDAIARG 175 Query: 174 NSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + G+ P PLE V V G LE SN N M +MI ++F +I + Sbjct: 176 DDGLFRLRPGAQPLEADPTVRVISGALEGSNVNPTEAMVEMIANARRFEMQMKMIQGADG 235 Query: 233 SMLEAIRNI 241 + + + Sbjct: 236 N-EQRANQL 243 >gi|260574401|ref|ZP_05842405.1| flagellar basal-body rod protein FlgG [Rhodobacter sp. SW2] gi|259023297|gb|EEW26589.1| flagellar basal-body rod protein FlgG [Rhodobacter sp. SW2] Length = 261 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 34/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKIS 57 + I + A + R+ V++N++N T G+ + F+++ + Q + Sbjct: 1 MNALQIAASGMAAQQMRVDVVSNNLANMSTTGYNARRADFADLHYQQLARPGTVSAQDGT 60 Query: 58 FVASGKE----------YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G + + G+ TG +LD A+EG + + P G TRDG Sbjct: 61 ILPTGVQLGLGVRPAAVSMVMAQGTLAQTGGDLDLAIEGQGYLEVTLPSGASAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K T DG +V++ G I IP ++ GE+ + ++ + L Sbjct: 121 KRTGDGLIVTSEGHQVAPG-----ITIPADARSLSINADGEVYAYFVDQVQPSLLGQLNL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G ++ I TP +D G T+++G+LE+S+ +++ E+ ++I Sbjct: 176 VGFTNEKGLEAIGSNLFLESPASGAAIVGTPGQDGLG-TLRQGYLEESSVDAVREVTELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + +I ++ ML A + Sbjct: 235 KAQRGYELNAKVITAADQ-MLSATTQL 260 >gi|240144761|ref|ZP_04743362.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|257203282|gb|EEV01567.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|291534609|emb|CBL07721.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1] gi|291540626|emb|CBL13737.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4] Length = 264 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 106/265 (40%), Gaps = 26/265 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV---------GAI 48 M + + RL +++N++N DT G++ F++ + + Sbjct: 1 MVKGLYTAYTGMINEQNRLDILSNNLANADTNGYKKEGATNQTFADELAIKIKDTSSYGM 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRD 103 + V G+ Y G+F T DFAL+GD +FA+ + +RD Sbjct: 61 PQKLGTMSMGVHIGETYTDYSQGNFRVTDNATDFALDGDGFFAIAYTDKAGNTSVKYSRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMA------SVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 G F V G LV+ G Y + IQ+ V EKG I Q + + T Sbjct: 121 GAFVVNTAGYLVTKDGDYVLNQNGAMNADAGARIQVDPNV-PITVDEKGNIFQNNQQVGT 179 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 +G+ + + + ++ S V +G +E SN N + EM MI ++ Sbjct: 180 IGVVDIADYNYLAKYGENMY--DLVNGGARQASTAKVTQGCIESSNINVVSEMVNMITIS 237 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 + F + +I+ ++++ +A+ + Sbjct: 238 RAFQAGQKVINAVDETLDKAVNQVG 262 >gi|91976615|ref|YP_569274.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5] gi|91683071|gb|ABE39373.1| flagellar basal body rod protein [Rhodopseudomonas palustris BisB5] Length = 244 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 8/231 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M IGL+ +AL+Q++ +A N++N +T GF+ ++F E + K K Sbjct: 1 MSDKTVIGLSRLIALQQQVDNLARNVANQNTTGFKREGIRFLEYLTDAKEADDIPSAPKR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S VA Y GS TG D A+ GD +F + + RG TR+G F + G LV+ Sbjct: 61 SLVAV-TGYTDFSAGSLQLTGNSTDAAVLGDGFFVVRTSRGDRYTRNGAFTLDKQGRLVT 119 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 SG + A+ I++P D ++G G IS +I + + D + V Sbjct: 120 LSGDLVL--AANGTIKVPLTDVNLSIGTDGTISTARSIIGRLRVVKFDDPRSLVAEGTGL 177 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + PP L + + + LE SN NS+ EM ++ T+ + + ++ Sbjct: 178 FASGSPPIEL-NAGSIRLATNALERSNVNSIREMSDLVAATRAYEQVANVV 227 >gi|88799022|ref|ZP_01114603.1| Flagellar basal body rod protein [Reinekea sp. MED297] gi|88778249|gb|EAR09443.1| Flagellar basal body rod protein [Reinekea sp. MED297] Length = 247 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 13/240 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I + ++ ++N++N T GF+ + + + + +F Sbjct: 1 MDRAIYIAMTGAKNNMMAQTSHSNNLANARTFGFKADWAQARAI--PVWGEHHPSRAFSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ I TG ELD A+ GD +FA+ G TR G F VT G L++ +G Sbjct: 59 TERPASDFNDGALIETGNELDTAITGDGFFAVLDAEGQEAYTRRGDFSVTPLGELINGAG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGFVRRE 173 + V+ PI +P E + G IS + ++IA L V+ + + Sbjct: 119 E-SVIGEGG-PIVLPPY-EKVEIAGDGTISIRPAGAGPNEMIAVDALKIVNPNFQDFEKG 175 Query: 174 NSGISPNIPPTPL-EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ + P+ D ++V GF+E SN NS++E+ ++ L +++ + ++ + Sbjct: 176 TDGLFRPVEGAPILPDDPLLSVVSGFVEASNVNSVHELTNLLALNRQYETQVKMMKTADD 235 >gi|288940410|ref|YP_003442650.1| flagellar basal-body rod protein FlgF [Allochromatium vinosum DSM 180] gi|288895782|gb|ADC61618.1| flagellar basal-body rod protein FlgF [Allochromatium vinosum DSM 180] Length = 246 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 16/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ S N++N +T GFR ++ + +V Sbjct: 1 MDRFLYLAMSGAKETAYAQSINNHNLANANTTGFRQALAY--AYTAPVRGPVYDSRDYVQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G + L G+ ST +LD A++G+ + +++ G TR G ++ G L + G Sbjct: 59 VGNQVLDFCPGTLQSTERDLDVAIQGEGFLVVQTEDGGEAYTRAGNLQIDATGVLRNERG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSVDMSQGFVR 171 VL PI IP+ E ++G G I+ + + + L + D Sbjct: 119 -LAVLGDGG-PITIPEY-ESLSIGTDGTITIRPAGAAPNALAAVDRLRLVNPDTQNLL-- 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ P +GV V G LE SN N++ + +MI L++ F + +++ Sbjct: 174 RGEDGLIRAQDGEPAVADAGVRVISGMLETSNVNTVASLTRMIELSRAFETHIKMMETAS 233 Query: 232 KS 233 + Sbjct: 234 SN 235 >gi|304404253|ref|ZP_07385915.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] gi|304347231|gb|EFM13063.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] Length = 272 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 32/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + +L + +N++N +TVGF+ +V F +++ + Sbjct: 1 MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKAGRVMFKDILSQNVAGVTAPEEGAK 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDG 104 G GS ++T D ++GD +FA+++ LTR G Sbjct: 61 GGVNAKQVGLGVAIAAIDTLHTAGSAMTTNVPTDVRIDGDGFFAVKTSPEQEVPYLTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE-ISQKGKVIA-----TM 158 F + LV+A G + VL PI + + F++ + G IS A + Sbjct: 121 NFYLDASRQLVTADGAF-VLAEGGEPIVLDEGVTSFSIAQDGSIISINADGTAEPTDFKI 179 Query: 159 GLYSVDMSQGFVRRENSGISPN---------IPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 G+ V G + ++ + + + G LE SN + E Sbjct: 180 GVVKVVNPSGLEKVGSNMYRVTPNANLEDIEVGSANNAETGTGAIIAGQLEMSNVDLTSE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + F + + +I +++ + E + Sbjct: 240 FTEMIIAQRGFQANSRIITTSDEVLQEVVN 269 >gi|28869143|ref|NP_791762.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato str. DC3000] gi|213967580|ref|ZP_03395728.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato T1] gi|301385715|ref|ZP_07234133.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tomato Max13] gi|302060072|ref|ZP_07251613.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tomato K40] gi|302134831|ref|ZP_07260821.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852383|gb|AAO55457.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato str. DC3000] gi|213927881|gb|EEB61428.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. tomato T1] gi|331017023|gb|EGH97079.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 246 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSGGAMVETGRELDIAIKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + +G G IS Q + + L D+ + Sbjct: 119 -LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--ME 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ E Sbjct: 174 KGPDGLIHTKSGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 EDDQSMARVL 243 >gi|295688784|ref|YP_003592477.1| flagellar basal-body rod protein FlgG [Caulobacter segnis ATCC 21756] gi|295430687|gb|ADG09859.1| flagellar basal-body rod protein FlgG [Caulobacter segnis ATCC 21756] Length = 262 Score = 197 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 97/263 (36%), Gaps = 33/263 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + + A + + +++N++N +TVGF+ + +F +++ Sbjct: 1 MQALRTAASGMSAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V +G Y E G+ T LD A++G + + P G TR G F Sbjct: 61 IVPTGVQVGGGVKAGSVYRITEQGTPTLTDNPLDLAIQGKGYLQILLPSGETAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 D G +V+ G Y V I +PQ + + G + K + I + L Sbjct: 121 STNDQGQIVTEDG-YTVQPG----ITVPQNAIDIIISKTGMVQVKLDGDPQPQTIGQLQL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ P + GV + + + E SN +S+ E+ +I Sbjct: 176 ANFMNEGGLEAIGDNLFLETAASGAANLAAPGQPGFGV-LMQHYTEASNVDSVSEITALI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + +I ++ + Sbjct: 235 TAQRAYEMNSKVISTADQMLQTT 257 >gi|90021854|ref|YP_527681.1| flagellar basal body rod protein FlgF [Saccharophagus degradans 2-40] gi|89951454|gb|ABD81469.1| Flagellar basal-body rod FlgF [Saccharophagus degradans 2-40] Length = 249 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 99/238 (41%), Gaps = 14/238 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I + + A+N++N +T GF+ + + + + ++ Sbjct: 1 MDKALYIAMTGAKHNMLAQTAHANNLANVNTTGFKADFAQARSM-PIYYGEGEPTRAYAL 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ + TG ELD A+E + + A+++P G TR G + G L + +G Sbjct: 60 TENPGTNFSQGALVETGRELDIAVEREGFIAVQAPDGTEAFTRAGSLHIDSVGILRTGNG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PVL PI +P E + G I+ + + L + D++ + Sbjct: 120 -LPVLGNGG-PIALPP-AEKIEMAADGTITLIPLGEGKEATVQADRVKLVNPDVNT-LTK 175 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 E+ + ++ V + GFLE SN N++ E+ M+ L++++ ++ Sbjct: 176 SEDGLLRALENDGEVQADGTVRIVSGFLEASNVNAVNELVSMLELSRQYEMQVKVMQT 233 >gi|146341904|ref|YP_001206952.1| flagellar basal body rod protein FlgG [Bradyrhizobium sp. ORS278] gi|146194710|emb|CAL78735.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bradyrhizobium sp. ORS278] Length = 262 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 101/262 (38%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 + + A E + +++N++N T GF+ F +++ + + Sbjct: 1 MQALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYEHVRRVGAQSSDQGT 60 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + S G+ TG +LD A+ G+ +F + P G TRDG F Sbjct: 61 ILPVGIDIGGGVKTVGTPRSMTQGTLSQTGNDLDLAISGEGFFKILMPDGTYQYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ + G +V+A G PV I IPQ V +G++S +I + + Sbjct: 121 QMDNQGRIVTAQGN-PVQPT----ISIPQNASGITVNSQGQVSVTLPGSTTSNIIGQLQV 175 Query: 161 YSVDMSQGFVRRENSGIS-PNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G N+ + P + ++ ++ +G LE +N + + EM ++I Sbjct: 176 TRFINKAGLQPVGNNQFTDTPSSGAPQDGIANQDGLGSITQGSLEQANVDVVSEMSELIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + +I ++ M Sbjct: 236 AQRAYEMNAKVISAADQMMQST 257 >gi|152997581|ref|YP_001342416.1| flagellar basal-body rod protein FlgF [Marinomonas sp. MWYL1] gi|150838505|gb|ABR72481.1| flagellar basal-body rod protein FlgF [Marinomonas sp. MWYL1] Length = 247 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + + A+N++N T GFR+ + + + D + Sbjct: 1 MDKALYLAMSGGVQTMNAQTIHANNLANVSTTGFRSDFEQARSM--QVYGDYHPSRVYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G I TG LD A+ GD + A+ G TR G F++ G LV+ G Sbjct: 59 TENPATRYTQGDMIQTGRNLDVAVAGDGFIAVYDESGQEAYTRAGDFQINAAGQLVTGRG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV + PI +P D N+ G IS + V+ + L + D + +R Sbjct: 119 -LPVAGVGG-PIFLPPADS-INITADGSISIVPQGGANNEVAVLNQIKLVNPD--KQNLR 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 +E G+ L+ V + GF+E SN N++ EM +++L ++F ++D Sbjct: 174 KEEDGLIHTRDGQALDADPNVQLVSGFIEGSNVNAVEEMTHIMNLARRFEMNVKMMDTIR 233 Query: 232 KSMLEAIRNI 241 + + R + Sbjct: 234 DNADSSARIL 243 >gi|288962678|ref|YP_003452972.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288914944|dbj|BAI76428.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 261 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 106/264 (40%), Gaps = 31/264 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQKIS 57 +I +A + + +++N++N +T ++ + +F +++ + + Sbjct: 1 MRVLSIASTGMMAQQLNVEVISNNIANINTTAYKRSRAEFQDLMYQAEKRQGSQSTDSGT 60 Query: 58 FVASGKEY----------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V +G E G+ STG ELD A+EG +F + P G + TR G F Sbjct: 61 IVPTGVEVGLGVRPTSVNRINTTGNLTSTGNELDLAIEGRGYFNVTQPGGETVYTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKV----IATMGL 160 K++ +G++V+A G I +PQ + GE+ GK + + Sbjct: 121 KLSPEGTIVTADGFTVAPG-----ITVPQGTREVVINRSGEVLAYVDGKTQPVNQGQLAM 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G ++ + P E L+G T+++ +LE SN N + E+ ++I Sbjct: 176 TVFVNESGLEALGDNLFRATPASGEPQEGLAGQAGFGTIRQKYLESSNVNVVQEITELIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + +I+ ++ Sbjct: 236 AQRAYEMNAKVIEAGDQMASTMTN 259 >gi|46578927|ref|YP_009735.1| flagellar basal-body rod protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603472|ref|YP_967872.1| hypothetical protein Dvul_2429 [Desulfovibrio vulgaris DP4] gi|46448339|gb|AAS94994.1| flagellar basal-body rod protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120563701|gb|ABM29445.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] gi|311232785|gb|ADP85639.1| flagellar basal-body rod protein FlgF [Desulfovibrio vulgaris RCH1] Length = 260 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 21/260 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 MQ S GL L E RL+ +A+N++N +T G++ + F + + +D Sbjct: 1 MQDSMLSGLFGALTTEHRLNNIANNLANVNTNGYKRDVLAFKDTMALFAHDEIMEPMANV 60 Query: 53 --------DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDG 104 ++ GSF T LD A+ G+ +F + +P G TR+G Sbjct: 61 RSKKLFPEPLHVARPRIAVARTDFSQGSFHYTSDPLDLAISGNGFFKVRTPEGEFYTRNG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 F+ T DG LV+ G +PVL I +PQ + V G I+ G + + + +V Sbjct: 121 HFRQTSDGQLVTMQG-WPVLSEGGD-INLPQG-KNLQVASDGRIAVDGVDVGQLQVVTVS 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSG--VTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +G + + T E G V V +G++E SN + EM MI ++F + Sbjct: 178 DLEGLEKLGGNLYRLREGSTAGEVPVGPDVIVSQGYIETSNVEVVNEMVNMIETQRQFEA 237 Query: 223 ITTLIDENEKSMLEAIRNIA 242 ++ ++ +AI I Sbjct: 238 YQKVMQTSDTVDRDAITKIG 257 >gi|77464904|ref|YP_354408.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides 2.4.1] gi|77389322|gb|ABA80507.1| putative flagellar basal body rod protein [Rhodobacter sphaeroides 2.4.1] Length = 261 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ +++N++N T G+ + F+++ Sbjct: 1 MKALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQAVRPGTVSAEDGR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + G+ T +LD A++G + + P G TRDG Sbjct: 61 MLPTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEVTLPSGQSAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +VS+ G + I IPQ ++ GE+ + +++ + L Sbjct: 121 KRSAEGLIVSSDGH-----EVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQISL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E + P I ED G T+++G+LE+S+ +S+ E+ ++I Sbjct: 176 TGFTNEKGLEAIGSNLFLETAASGPPIAGVAGEDGFG-TLRQGYLEESSVDSVQEITELI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + +I ++ + Sbjct: 235 KAQRGYELNAKVITAADQML 254 >gi|188592118|ref|YP_001796716.1| flagellar basal body rod protein flgf [Cupriavidus taiwanensis LMG 19424] gi|170938492|emb|CAP63479.1| Flagellar basal-body rod protein flgF [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 14/249 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ + + + V++N++N T FR + V + +F Sbjct: 1 MDRMIYTALSGAKQILDQQAAVSNNLANVSTPAFRAQVNLYRAV--PVVGPEAGTRAFTL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG LD AL+G+ W +++P G TR G +V DG + + SG Sbjct: 59 ASTPGADMRAGPLTYTGRALDVALQGNGWLVVQAPDGSEAYTRAGALQVAQDGQVQTISG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV------DMSQGFVRRE 173 PV+ P+ +P + +G G I+ +G A+ GL V + + R Sbjct: 119 -LPVMGDGG-PLAVPPGSQ-VTIGTDGTITARGPGEASAGLAQVGRLRVVNPPNDAIARS 175 Query: 174 NSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + G+ P PLE V V G LE SN N M +MI ++F +I + Sbjct: 176 DDGLFRLRPGAQPLEADPTVRVISGALEGSNVNPTEAMVEMIANARRFEMQMKMIQGADG 235 Query: 233 SMLEAIRNI 241 + + + Sbjct: 236 N-EQRANQL 243 >gi|330967092|gb|EGH67352.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. actinidiae str. M302091] Length = 246 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSGGAMVETGRELDIAIKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + +G G IS Q + + L D+ + Sbjct: 119 -LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--ME 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P + V V+ GFL+ SN N++ EM ++ L+++F ++ E Sbjct: 174 KGPDGLIHTKSGQPAAADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 EDDQSMARVL 243 >gi|264676571|ref|YP_003276477.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni CNB-2] gi|262207083|gb|ACY31181.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni CNB-2] Length = 246 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 11/237 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A QR + +A N++N T GFR F V ++ F Sbjct: 1 MDKIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSV--PLQGSGAGTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G TG LD G AWFA++ G TR+G F+++ +G LV+++G Sbjct: 59 EATSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 + VL PI IP + ++G G ++ Q + + L + + + VR + Sbjct: 119 Q-AVLSDGGAPIDIPPE-STISLGSDGTLTAKMGNQLPVAVGRVKLVTPPVDEPLVR-GD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G L + + G +E SN NS+ M MI +++F L+ E Sbjct: 176 DGFFRAAQGDALPNDETARLLSGSIEGSNVNSVETMVGMIAASRQFEQQMKLLQTAE 232 >gi|148256792|ref|YP_001241377.1| flagellar basal body rod protein FlgG [Bradyrhizobium sp. BTAi1] gi|146408965|gb|ABQ37471.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Bradyrhizobium sp. BTAi1] Length = 262 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 100/262 (38%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 + + A E + +++N++N T GF+ F +++ + + Sbjct: 1 MQALHTAATGMAAQELNVQVISNNIANLRTTGFKKQTAAFQDLIYDHVRRVGAQSSDQGT 60 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + S G+ TG LD A+ G+ +F + P G TRDG F Sbjct: 61 ILPVGIDIGGGVKTVGTPRSMTQGTLSQTGNSLDLAISGEGFFKILMPDGTFQYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ + G +V+A G PV I IPQ V +G++S ++ + L Sbjct: 121 QMDNQGRIVTAQGN-PVQPT----ISIPQNASGITVNAQGQVSVTLPGSTTSNIVGQLQL 175 Query: 161 YSVDMSQGFVRRENSGIS-PNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 G N+ + P + ++ ++ +G LE +N + + EM ++I Sbjct: 176 TRFINKAGLQPVGNNQFTDTPSSGAPQDGVANQDGLGSITQGSLEQANVDVVSEMSELIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + +I ++ M Sbjct: 236 AQRAYEMNAKVISAADQMMQST 257 >gi|315649858|ref|ZP_07902941.1| fagellar hook-basal body protein [Paenibacillus vortex V453] gi|315274832|gb|EFU38213.1| fagellar hook-basal body protein [Paenibacillus vortex V453] Length = 274 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 37/275 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKIS 57 M S + + AL+QRL +ADNM+N +T G++ + F +V+ ++ D D+ Sbjct: 1 MNNSMISAMVSMNALQQRLDVIADNMANVNTAGYKKKEASFDDVLTQVQGHHKDFDRTGR 60 Query: 58 FVASG----------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 G + E G+ TG D ++G A FA++ I TR+G F Sbjct: 61 STPLGYTLGYGMRLSSVVQNMEQGAMKETGNPFDLMIDGQAMFAVQGDGAIGYTREGGFH 120 Query: 108 V-----TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIAT 157 V + L++ S YPVLD+ + PI P K + V EKG+I + ++AT Sbjct: 121 VTPDARNPNNLLLANSQGYPVLDVNNNPISFPSKGK-VAVNEKGQIILETFAGVRSIVAT 179 Query: 158 MGLYSVDMSQGFVRRENSGI-----------SPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 + + ++ +G V ++ PP P E +V GF+E SN N Sbjct: 180 LKVVELERPEGLVAVGDNLFVVGEGLTEGDVFDLTPPAPGE-PPKSSVLSGFVEQSNVNL 238 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +M+ + + + + + ++ +M+ + Sbjct: 239 TDEMTKMMEVQRAYQLMARALSSSD-TMMNLANTM 272 >gi|149194279|ref|ZP_01871376.1| flagellar basal-body rod protein [Caminibacter mediatlanticus TB-2] gi|149135454|gb|EDM23933.1| flagellar basal-body rod protein [Caminibacter mediatlanticus TB-2] Length = 262 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 117/261 (44%), Gaps = 22/261 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDID---- 53 M F A + RL+ +++N++N +T GF+ + F + ++ + Sbjct: 1 MINGFYDTTGAMVTQFNRLNQISNNLANVNTNGFKQDSLIIGTFERLFKQTRDKLPLENN 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTR 102 +EY + +G+ I T LD AL +++F L++P G +TR Sbjct: 61 TKEAAKFLNRNLNKVPQIVEEYTNFSLGNMIKTSNPLDIALKNKNSFFVLDTPSGDKITR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 DG F + ++G LV+ G + VLD+ PI++P+ + + I G+ + T+ + S Sbjct: 121 DGAFSLDENGFLVNKKG-FKVLDINDKPIKLPKNTKNITIDNDANIYINGEKLTTLKIVS 179 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +D + + N+ + +P + + T+ +GF+E SN N + EM +I + Sbjct: 180 IDNLKDIKKVGNN-MWDFVPGSEIISTKNTTI-QGFIEKSNVNVIKEMTDLIETNRLVEQ 237 Query: 223 ITTLIDENEKSMLE-AIRNIA 242 ++ + + AI +A Sbjct: 238 YQKVMTTFMDDLNKDAIEKLA 258 >gi|149911701|ref|ZP_01900309.1| flagellar basal-body rod protein FlgF [Moritella sp. PE36] gi|149805231|gb|EDM65248.1| flagellar basal-body rod protein FlgF [Moritella sp. PE36] Length = 247 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ A+N++N +T GF+ + + + A + ++ F Sbjct: 1 MDNMLYISMSGAKENMNALAVRANNLANVNTHGFKAD-FEQARSMQAFGEGLPTRV-FAI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ TG LD AL+GD W ++ + TR G ++ G L+++SG Sbjct: 59 TESPGQDFTGGALQQTGNALDVALQGDGWLSVLDDKNNEGYTRSGSLHMSATGELLTSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + PVL PI IP E + G I + + + + L + D+ + Sbjct: 119 R-PVLGENG-PIIIPTPIEQIQIHADGRIEIRPQGAPANALEQVDQLKLVNPDVRN--LV 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ TP V V G LE SN +++ E+ MI+L ++F ++ E Sbjct: 175 KGYDGLFRQADGTPAVVDPNVQVAGGVLETSNVSAVGELTGMINLQRQFEMQIKMMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|330875985|gb|EGH10134.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 246 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSGGAMVQTGRELDIAIKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + +G G IS Q + + L D+ + Sbjct: 119 -LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--ME 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P + V V+ GFL+ SN N++ EM ++ L+++F ++ E Sbjct: 174 KGPDGLIHTKSGQPAAADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 EDDQSMARVL 243 >gi|83944162|ref|ZP_00956618.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. EE-36] gi|83845029|gb|EAP82910.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. EE-36] Length = 261 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 100/263 (38%), Gaps = 33/263 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I LA + + +A+N++N +T GF++ + F ++V S Sbjct: 1 MKALGIAATGMLAQQTNVDVIANNIANANTTGFKSGRAAFQDLVYQSFASAGSLTSEEGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G I T +LD A+EG +F + P G TRDG F Sbjct: 61 ARPVGTDIGLGVQAAGVIRHNIQGGLIQTENQLDLAIEGRGYFTVNRPDGTQAFTRDGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +++ +G LV+ +G I +P+ + ++G + + + + Sbjct: 121 QLSAEGQLVTLNGY-----EVEPAIIVPELTRQVEINQEGVVMAYVENDPEPVELGQLNF 175 Query: 161 YSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ + P G+T ++G+LE SN N + ++ +I Sbjct: 176 ATFLNEAGLKPVGDNLMEQTAASGEPVQNVPGTPGVGIT-RQGYLEQSNVNIIQQITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I+ ++ M Sbjct: 235 SAQRAYEMNSKAIETADQIMTTT 257 >gi|168699693|ref|ZP_02731970.1| flagellar basal body rod protein FlgG [Gemmata obscuriglobus UQM 2246] Length = 263 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 96/264 (36%), Gaps = 33/264 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + ++N++N +T GF+ + F +++ + Sbjct: 1 MIKALFTSATGMNVQTTAIDNTSNNIANVNTNGFKKGQADFQDLLYVSQRAPGSDAAAGL 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q S G+ ++T D A+EG+ +F + P G TRDG Sbjct: 61 QVPTGLQIGSGARVAGITKVFTPGALVNTQNPFDVAVEGEGFFQVTLPSGELRYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-------VIATMG 159 ++ G+LV++ G S + IP + +VG G IS + V+ + Sbjct: 121 RLNAQGNLVTSDGFL-----ISPQVTIPTQAVSVSVGSDGTISVQNAGALNASTVLGQLT 175 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L G + + TP ++ G T ++GFLE SN + + E+ + Sbjct: 176 LVRFQNPAGLSAEGRNLFAETASSGTPLIATPGQNGVGFT-RQGFLERSNVDVVTELINL 234 Query: 214 IHLTQKFNSITTLIDENEKSMLEA 237 I + + T + + + Sbjct: 235 ILAQRAYEFNTRAVRTADNMLAST 258 >gi|307546967|ref|YP_003899446.1| flagellar basal body rod protein FlgF [Halomonas elongata DSM 2581] gi|307218991|emb|CBV44261.1| flagellar basal body rod protein FlgF [Halomonas elongata DSM 2581] Length = 253 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 20/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ ++ V+ N+SN T GFR V ++D ++S VA Sbjct: 1 MDRMLYTAMSGVRQSMEQQGVVSHNLSNVSTTGFRAQLHAMRAVPVQGDGELDTRVS-VA 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG LD A++G+AW A+++ G TR G +V DG L SA Sbjct: 60 ASTPGSDFSPGPMNRTGRTLDVAMQGNAWLAVQASDGSEAYTRRGDLQVDGDGLLRSA-- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PIQ+P + ++G G IS + + L + + QG + Sbjct: 118 GRPVIGENGGPIQVPLGSQ-LSMGSDGTISAIAPGQQADALAAVGRIKLVTPE--QGGLE 174 Query: 172 RENSGISPNIPP-----TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 R G+ P L V G LE SN +++ M MI + +++ T + Sbjct: 175 RGVDGLFRAPPGEDGAVAALPADDQAQVVSGALEGSNVSAVDAMVSMIDVARRYELQTKV 234 Query: 227 IDENEKSMLEA 237 I+ +++ A Sbjct: 235 IETADENAQRA 245 >gi|316932823|ref|YP_004107805.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris DX-1] gi|315600537|gb|ADU43072.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris DX-1] Length = 262 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 96/264 (36%), Gaps = 31/264 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T GF+ +F +++ + + S Sbjct: 1 MRALYTAATGMAAQELNVQVISNNIANMRTTGFKKQTAQFQDLIYDHVRRVGAQASDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G+ TG +LD A+ G+ +F ++ P G TRDG F Sbjct: 61 ILPVGVDIGGGVKTVGTPRLMTQGTLSPTGNDLDMAVRGEGFFKIQMPDGTFAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G +V+A G PV I IP V G++S V+ +GL Sbjct: 121 TTDNTGRIVTAGGN-PVQPT----ITIPNGATSITVATNGQVSVTISGSTTPTVLGQIGL 175 Query: 161 YSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 G + ++ TP + ++ + + LE +N + E+ +I Sbjct: 176 TRFINKAGLQPQGDNLFVETPASGTPQDGIATADGLGDIMQKTLEQANVEVVTEISDLIS 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + ++ ++ + Sbjct: 236 AQRAYEMNAKVVSAADQMLQSTAN 259 >gi|221069321|ref|ZP_03545426.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni KF-1] gi|220714344|gb|EED69712.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni KF-1] Length = 246 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 11/237 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A QR + +A N++N T GFR F V ++ F Sbjct: 1 MDRIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSV--PLQGTGAGTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G TG LD G AWFA++ G TR+G F+++ +G LV+++G Sbjct: 59 EATSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 + VL PI IP + ++G G ++ Q + + L + + + VR + Sbjct: 119 Q-AVLSDGGAPIDIPPE-STISLGSDGTLTAKMGNQLPVAVGRVKLVTPPVDEPLVR-GD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G L + + G +E SN NS+ M MI +++F L+ E Sbjct: 176 DGFFRAAQGDALPNDETARLLSGSIEGSNVNSVETMVGMIAASRQFEQQMKLLQTAE 232 >gi|83955138|ref|ZP_00963794.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. NAS-14.1] gi|83840467|gb|EAP79640.1| flagellar basal-body rod protein FlgG [Sulfitobacter sp. NAS-14.1] Length = 261 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 100/263 (38%), Gaps = 33/263 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + I LA + + +A+N++N +T GF++ + F ++V S Sbjct: 1 MKALGIAATGMLAQQTNVDVIANNIANANTTGFKSGRAAFQDLVYQSFASAGSLTSEEGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G I T +LD A+EG +F + P G TRDG F Sbjct: 61 ARPVGTDIGLGVQAAGVIRHNIQGGLIQTENQLDLAIEGRGYFTVNRPDGTQAFTRDGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +++ +G LV+ +G I +P+ + ++G + + + + Sbjct: 121 QLSAEGQLVTLNGY-----EVEPAIIVPELTRQVEINQEGVVMAYVENAPEPVELGQLNF 175 Query: 161 YSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ + P G+T ++G+LE SN N + ++ +I Sbjct: 176 ATFLNEAGLKPVGDNLMEQTAASGEPVQNVPGTPGVGIT-RQGYLEQSNVNIIQQITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + I+ ++ M Sbjct: 235 SAQRAYEMNSKAIETADQIMTTT 257 >gi|221640825|ref|YP_002527087.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides KD131] gi|332559802|ref|ZP_08414124.1| FlgG2 [Rhodobacter sphaeroides WS8N] gi|221161606|gb|ACM02586.1| Flagellar basal-body rod protein FlgG precursor [Rhodobacter sphaeroides KD131] gi|332277514|gb|EGJ22829.1| FlgG2 [Rhodobacter sphaeroides WS8N] Length = 261 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ +++N++N T G+ + F+++ Sbjct: 1 MKALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQVVRPGTVSAEDGR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + G+ T +LD A++G + + P G TRDG Sbjct: 61 MLPTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEVTLPSGQSAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +VS+ G + I IPQ ++ GE+ + +++ + L Sbjct: 121 KRSAEGLIVSSDGH-----EVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQISL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E + P I ED G T+++G+LE+S+ +S+ E+ ++I Sbjct: 176 TGFTNEKGLEAIGSNLFLETAASGPPIAGVAGEDGFG-TLRQGYLEESSVDSVQEITELI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + +I ++ + Sbjct: 235 KAQRGYELNAKVITAADQML 254 >gi|326202441|ref|ZP_08192310.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] gi|325987559|gb|EGD48386.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] Length = 265 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 34/269 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 M + LA +++L + +NM+N +T ++ V F E++ ND + Sbjct: 1 MIRGLYTSAWSMLANQKKLDVITNNMANVNTTAYKKDTVVYQSFPEILTRRINDTQSPTN 60 Query: 58 FVAS----------GKEYLSKEVGSFISTGTELDFALEGD--------AWFAL------E 93 A G+ Y G + TG D A++ D A+F + + Sbjct: 61 PSAVVGSMELSSDVGEVYTYYTPGQIVQTGDRYDLAIKDDNTGDKASPAFFTVGVTNPQD 120 Query: 94 SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 + T++G F + + LV+ G Y VL PI + Q D F V KG I Q G Sbjct: 121 NTMQEFYTKNGSFTLNSNNQLVTGDG-YAVLGKKG-PITLKQGD--FTVDSKGNIMQNGA 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 V+ T+ + S + N+ + N + + +G +V +G+ E SN N + EM M Sbjct: 177 VVDTLRIAQFADSTQLRKFGNNLVQNN--GGEVAEFTG-SVIQGYDELSNVNIIDEMVDM 233 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIA 242 I + + + + ++ + ++ +A+ + Sbjct: 234 ITVMRAYEANQKVLQAQDGTLDKAVNEVG 262 >gi|240144760|ref|ZP_04743361.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|257203281|gb|EEV01566.1| flagellar basal-body rod protein FlgG [Roseburia intestinalis L1-82] gi|291534610|emb|CBL07722.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1] Length = 272 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 33/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + +A + + +++N+SN +TVG++ K++F ++ + Sbjct: 1 MMRALYTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEE 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF- 106 V G S GS +++ DFA+ GD +FA+ G TR G F Sbjct: 61 KPISAQVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFV 120 Query: 107 -KVTDDGSLV--SASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEI---SQKGKVIA-- 156 V G+L + G YPVLD + PI +P E V E G++ + G + Sbjct: 121 WSVNAGGTLTLCTNEG-YPVLDSNNQPINLPAGISAEKVIVSENGKMGYTNAAGTYVDMN 179 Query: 157 -TMGLYSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 T+GL+ + G + + ++ + + +L+ V + +LE SN E Sbjct: 180 QTIGLFQFNNPSGLEKTGTNLLAVTPASGNAMNESTTANLTKSKVLQKYLEGSNVQVADE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M +I + + + I +++ + +A N+ Sbjct: 240 MVNLIIAQRAYQLNSKAITTSDEMLEQA-NNL 270 >gi|217976225|ref|YP_002360372.1| flagellar basal body rod protein FlgG [Methylocella silvestris BL2] gi|217501601|gb|ACK49010.1| flagellar basal-body rod protein FlgG [Methylocella silvestris BL2] Length = 262 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 103/267 (38%), Gaps = 31/267 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + +I A + ++ +A+N++N +T GF+ + +F++++ + Sbjct: 1 MKALSIAATGMAAQDLNVAVIANNIANINTTGFKRARAEFTDLLYQAERLQGVSSRGQSN 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + Q V + G+ +TG +LD+AL G WF + G + TR G F Sbjct: 61 TIPEGAQLGLGVRTASIRNLHIQGTLTNTGNKLDWALNGRGWFQVTDANGDTVYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 G +V++ G S + +P V + G +S + + + L Sbjct: 121 NTNGTGQIVTSDGYIV-----SPTMIVPTNAVDVTVSQSGMVSATLSGQPAPQQLGQISL 175 Query: 161 YSVDMSQGFVRRENSGISPN-IPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G N+ +P+ + G TV + +LE SN + + E+ +I Sbjct: 176 ANFANEAGLTPLGNNLYRQTEASGSPIVGVPGDPGFATVSQSYLESSNVDPVKEITDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + +I + +N+ Sbjct: 236 AQRAYEMNSKVIQAASEMESTVSKNMG 262 >gi|149203125|ref|ZP_01880096.1| flagellar basal-body rod protein FlgG [Roseovarius sp. TM1035] gi|149143671|gb|EDM31707.1| flagellar basal-body rod protein FlgG [Roseovarius sp. TM1035] Length = 261 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 106/264 (40%), Gaps = 34/264 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID----------- 53 I A + R+ T+++N++N T G+ + +F+++ Sbjct: 4 LKIAATGMAAQQMRVETISNNLANMSTTGYNARRAEFADLHYQQLARAGTINAADGTVLP 63 Query: 54 ---QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 Q V + GS T +LD A++G + + P G TRDG K + Sbjct: 64 TGVQLGLGVRPSAISVQLAQGSLTQTNGDLDLAIDGGGYLEVRLPSGQSGYTRDGALKRS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 DG +V++ G +P+ I IP+ + +GE+ + + + + + L Sbjct: 124 ADGVIVNSEG-FPIAPE----ITIPEDARSITINAEGEVFAFFQDTAEAQQLGQIDLVGF 178 Query: 164 DMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 +G + P T +D G T+++G+LEDS+ + + E+ ++I Sbjct: 179 TNPKGLEAIGGNLFVETEASGPANVTTAGQDGLG-TLRQGYLEDSSVDPVREITELIEAQ 237 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + + +I ++ ML A + Sbjct: 238 RGYELNAKVITAADQ-MLSATTQV 260 >gi|332531619|ref|ZP_08407516.1| flagellar basal-body rod protein FlgF [Hylemonella gracilis ATCC 19624] gi|332038982|gb|EGI75411.1| flagellar basal-body rod protein FlgF [Hylemonella gracilis ATCC 19624] Length = 246 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 11/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A + R S +++N++N T GFR + V ++ + F Sbjct: 1 MDRIIYTAMTGANAAQHRQSVLSNNLANVSTNGFRAELSTYRAV--PLRGEGATTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 G + TG +LD + +WFA++ G TR+G F+V+ G L +++G Sbjct: 59 EATAGQRDAPGPSMRTGRDLDAMPQQSSWFAVQGLDGGEAYTRNGSFEVSPQGVLQTSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 P+L PI +P+ + ++G G IS Q + + L + Q ++R + Sbjct: 119 -LPLLSDGGSPITVPENA-VVSLGSDGTISAQSAGQPPTTLGRIKLAT-PTEQDRLKRGD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + L + + G LE SN N++ M MI ++F ++ E Sbjct: 176 DGLFRPVSGGQLPSDTNARMDVGVLEGSNVNAVETMVGMIQTARQFEQQMRMLQTAESDD 235 Query: 235 LEAIR 239 A + Sbjct: 236 RSAAK 240 >gi|299531285|ref|ZP_07044695.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni S44] gi|298720692|gb|EFI61639.1| flagellar basal-body rod protein FlgF [Comamonas testosteroni S44] Length = 246 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 11/237 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A QR + +A N++N T GFR F V ++ F Sbjct: 1 MDKIIYTSMTGANAAAQRQAVLAHNLANAGTNGFRAEMSTFRSV--PLQGTGAGTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G TG LD G AWFA++ G TR+G F+++ +G LV+++G Sbjct: 59 EATSGYQDTPGPAQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEISPEGQLVNSNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 + VL PI IP + ++G G ++ Q + + L + + + VR + Sbjct: 119 Q-AVLSDGGAPIDIPPE-STISLGSDGTLTAKMGNQLPVAVGRVKLVTPPVDEPLVR-GD 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G L + + G +E SN NS+ M MI +++F L+ E Sbjct: 176 DGFFRAAQGDALPNDETARLLSGSIEGSNVNSVETMVGMIAASRQFEQQMKLLQTAE 232 >gi|291288380|ref|YP_003505196.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290885540|gb|ADD69240.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 252 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 17/254 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + ++R+ ++ N++N +TVG + FSE + D I Sbjct: 1 MINGLYTATSGMAMQQRRMDIISSNLANLNTVGHKKEVGVFSEYIANASETPDDIIRNSD 60 Query: 57 ------SFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRDGRFKVT 109 S V ++ + G TG +D AL +A+FA+++P G+ TRDG F + Sbjct: 61 YNKMINSTVRLDDIKVNFQQGYLKETGNSMDMALTNPNAFFAVDTPYGVRFTRDGSFILN 120 Query: 110 DDGSLVSASGKYPVLDMAS-VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 + G L + G V +M S P+Q+ + V E+GE+ +G ++ + + + Sbjct: 121 EQGELTTKDGFKVVSNMDSLQPVQMVEGAI---VNEEGEMLLEGALVNNIEIAQFEDLSA 177 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + + + + G + G+LE SN N + EM +MI ++ F + + +I Sbjct: 178 LQKTGRNLYVAVDALPDVAENPG--LMTGYLEGSNVNPVEEMVKMIEASRGFETYSKIIT 235 Query: 229 ENEKSMLEAIRNIA 242 ++ +A+ + Sbjct: 236 TFDEIDSKAVNEVG 249 >gi|325274798|ref|ZP_08140826.1| flagellar basal body rod protein FlgF [Pseudomonas sp. TJI-51] gi|324100066|gb|EGB97884.1| flagellar basal body rod protein FlgF [Pseudomonas sp. TJI-51] Length = 246 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 104/251 (41%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKLLYVAMTGASQNALAQKAHANNLANVSTNGFQRDLEQARSM--PVFGDSFPARAFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG +LD A+ G+ + A+++P G R G + G L + +G Sbjct: 59 TERPATDFTQGPLVETGRDLDVAVTGNGFIAVQAPDGSEAYVRTGSLNIDALGVLRAGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + VG G +S + + + L + D+ ++ Sbjct: 119 -MPVIGNGG-PIAVPPE-QKVEVGADGTLSIRSMGEDPRVIAEVDRIKLVNPDIKG--LK 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G+ P + V V GFLE SN N++ EM ++ L+++F +++ Sbjct: 174 KGLDGLIHTTSGQPADADVNVRVVSGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNTAK 233 Query: 231 --EKSMLEAIR 239 +++M ++ Sbjct: 234 EGDEAMARVLQ 244 >gi|254496889|ref|ZP_05109737.1| flagellar basal body rod protein FlgG [Legionella drancourtii LLAP12] gi|254353908|gb|EET12595.1| flagellar basal body rod protein FlgG [Legionella drancourtii LLAP12] Length = 261 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 103/266 (38%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 MQ + + + A E+ ++T+A+N++N +T G++ + +F +++ + + S Sbjct: 1 MQPALWVSKSGLEAQEKTIATIANNLANVNTTGYKKDRAQFEDLLYQNTSQAGAQSSENS 60 Query: 58 ------FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 +G +S E GS T D A++G +F + P G TR+G F Sbjct: 61 IIPTGINTGTGVHLVSTQKLFEQGSIQHTNNAYDVAIQGQGFFTILMPDGTQAYTRNGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G +V + G I +P + + + G +S + T+ L Sbjct: 121 SIDSTGQVVDSHGYLL-----QPAITLPAQTLGITISQDGVVSATVAGSTTPTNLGTIQL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E P + G T+ + LE SN N + E+ MI Sbjct: 176 TNFMNPAGLQPIGQNLYTETQSSGNPTLNNPGSNGLG-TLLQNNLEASNVNVVEELVNMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRN 240 + + + + +ML+ + Sbjct: 235 QAQRGYEITAKGMQTVD-NMLQYLNQ 259 >gi|325111114|ref|YP_004272182.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] gi|324971382|gb|ADY62160.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] Length = 256 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 95/257 (36%), Gaps = 18/257 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS------EV---VGAIKND 51 M R +++N++N +T F+ F+ E+ + + Sbjct: 1 MLYGLYQSATGADLQSLRQDVISNNIANANTSSFKRDLAIFAVRPQQAELDGDLDDVPPP 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 + + G TG D AL G +F + + +L+R G + ++ Sbjct: 61 LQGHPGAAVVAETVTDFAQGPLQETGAAFDIALLGKGFFRVSDGQEELLSRSGSLTLNEN 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDM 165 LV PVLD PI +P N GE G ++ + V+ + L + Sbjct: 121 SELVQTDTGLPVLDDKGDPIVVPPN-TDINFGEDGLVTAVDRVTGQPFVLGRIDLVHPNN 179 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 +G + +S + + V++GFLE S + EM MI ++ F + Sbjct: 180 PRGLEKVGDSLYR--AAEGVVTAGPELRVRQGFLEQSGVRPITEMLAMIESSRAFEANMN 237 Query: 226 LIDENEKSMLEAIRNIA 242 LI + ++ + ++ + Sbjct: 238 LIQNQDNTLGQLLQAVG 254 >gi|218703527|ref|YP_002411046.1| flagellar basal body rod protein FlgG [Escherichia coli UMN026] gi|218430624|emb|CAR11490.1| Flagellar basal-body rod protein (flgG-like) (Distal rod protein) [Escherichia coli UMN026] Length = 303 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 97/267 (36%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +A+N++N +T GF+ +V F ++ + Sbjct: 43 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 102 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G + ++ G I TRDG Sbjct: 103 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNL 162 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG L ++ G I +P GE G ++ + + L Sbjct: 163 QVNADGVLTNSQGL-----PLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTL 217 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ LE SN + + EM MI Sbjct: 218 VNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLG-TLQDNALEGSNVDIVNEMVAMI 276 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 277 TVQRAYEMNAKMVSAADDMLQYISQTL 303 >gi|126463746|ref|YP_001044860.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] gi|126105410|gb|ABN78088.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17029] Length = 261 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ +++N++N T G+ + F+++ Sbjct: 1 MKALQIAATGMSAQQTRVDVISNNLANMSTTGYNARRADFADLHYQQVVRPGTVSAEDGR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + G+ T +LD A++G + + P G TRDG Sbjct: 61 MLPTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYLEVTLPSGQSAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +VS+ G + I IPQ ++ GE+ + +++ + L Sbjct: 121 KRSAEGLIVSSDGH-----EVAPGITIPQDAASISIDATGEVWGYFTGQVQPQLLGQISL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E + P I ED G T+++G+LE+S+ +S+ E+ ++I Sbjct: 176 TGFTNEKGLEAIGSNLFLETAASGPPIGGVAGEDGFG-TLRQGYLEESSVDSVQEITELI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + +I ++ + Sbjct: 235 KAQRGYELNAKVITAADQML 254 >gi|146341903|ref|YP_001206951.1| flagellar basal body rod protein FlgF [Bradyrhizobium sp. ORS278] gi|146194709|emb|CAL78734.1| putative flagellar basal-body rod protein (flgF or flgG) [Bradyrhizobium sp. ORS278] Length = 254 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 119/253 (47%), Gaps = 14/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 M+ + IGL+ Q+ LE++L VA+N++N +T GF+ + F E + + + +K Sbjct: 1 MENALLIGLSRQMVLERQLDVVANNVANVNTNGFKADQQLFEEYLSSGAHEDNFPGAARK 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V Y GS TG LD A+ GD + +++ G TRDG + + G LV Sbjct: 61 VSYVQDRGTYRDFTQGSTERTGNALDVAISGDGFLTVQTAGGERYTRDGNLHMNNTGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 +A+G VL PI D N+ G ++ + + + S Q Sbjct: 121 TAAGDL-VLGTGG-PIVFQPTDHDINISPDGTVTVVEGVNRTDSIRGKLRIVSFADPQKA 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ N+ + P +D + TV++G++E SN +++ EM +M+ + + + + ++ Sbjct: 179 QKQGNNLYAAVGGAAPQQD-TKSTVQQGYIEKSNVSAVGEMSKMVEVMRAYTQVANMLQV 237 Query: 230 NEKSMLEAIRNIA 242 AI +A Sbjct: 238 QSDLRKSAIEKLA 250 >gi|118443708|ref|YP_877999.1| flagellar basal body rod protein FlgG [Clostridium novyi NT] gi|118134164|gb|ABK61208.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] Length = 266 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 108/268 (40%), Gaps = 30/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGA---------- 47 M S ++ + E + +++N++N TVG++ + F +V+ Sbjct: 1 MIRSIYTAVSGLINQEAQQDVISNNLANATTVGYKKDNLVGKSFKDVMMHNYDKVVGGKH 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP------RGIILT 101 +KNDI + Y + G ST DFAL+G +F + T Sbjct: 61 VKNDIGMLSMGSKLDQSYTNFTQGVLESTDKSTDFALQGRGFFVVSRNSRVAGGGQNFYT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDM----ASVPIQIPQ---KDEIFNVGEKGEISQKGKV 154 RDG F V G LV++SG + A PI + + ++GE+ G + Sbjct: 121 RDGHFHVERTGYLVNSSGDRVMGQNMRTGAMEPIYLGNERTGPSKISCNDRGELFLDGSL 180 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + D + ++ ++ S P +G VK+ +LE SN N M E+ M+ Sbjct: 181 KYKINVVDFDNYETLRKQGDNLYSGGNP----RAYNGAIVKQNYLEKSNVNVMEEVSDMM 236 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + F S L+ ++++ + + + Sbjct: 237 MTMRNFESNQKLVQSLDETLGKTVNEVG 264 >gi|226950050|ref|YP_002805141.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] gi|226841546|gb|ACO84212.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] Length = 263 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 114/263 (43%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M + + +A + +L ++++N++N +TVG++ V F E+V + Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 +I A+ + + G+ ++TG + D A++G +F + G R G F + Sbjct: 61 EIQTGTGVKATNWIRDTHQQGALLTTGNKTDLAIDGQGFFRVIMADGDYAYERSGNFLID 120 Query: 110 DDGSLVSASGKY---PVLDMASVPI--QIPQ-KDEIFNVGEKGEISQK-----GKVIATM 158 +G LV +G + V I +I N+ E G IS + KV+ + Sbjct: 121 RNGMLVDENGNALDIQLQQPEGVQILNRIGGFDANNINIAEDGSISVRDTDGLNKVVGKI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +Y+ + F+ + P + + V++ +GFLE+SN ++ EM +MI + Sbjct: 181 NIYNAVGADAFLSIGRNLYLPRDGVNVFVN-NDVSILQGFLENSNVDAGKEMTEMIITQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + I ++ M + N+ Sbjct: 240 AFELSSRGIKTADE-MWGIVNNM 261 >gi|294501851|ref|YP_003565551.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium QM B1551] gi|294351788|gb|ADE72117.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium QM B1551] Length = 274 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 115/275 (41%), Gaps = 37/275 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV------------ 45 M F A L+ +++ + +N++N +T GF+ + F +++ Sbjct: 1 MFKGFYTAAAGMLSQQRQTDLLTNNIANANTPGFKADQGTLKAFPDMLLQRMESEDLPTD 60 Query: 46 ----GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL--------EGDAWFALE 93 K DI + V + + G T D AL EG +F ++ Sbjct: 61 RSISVQNKKDIGAINTGVYMQETVPNFTQGDLQQTSQSTDIALMEQNMPTKEGGLFFVVQ 120 Query: 94 SPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 SP TR+ F + +G L +++G Y VL+ + PIQ+ K E F V +G +++ Sbjct: 121 SPDNTPQYTRNSNFTLDQEGFLTTSTGAY-VLNTNNQPIQL--KSENFTVDSQGNVTENN 177 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSM 207 + +A + + Q +++ +G+ + PL +K+GF+E SN ++ Sbjct: 178 QQVAQIDIAYASDLQT-IKKAGNGLYETLNNQPLPSARNNPGISYQLKQGFVERSNVDAA 236 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + ++ ++SM +A I Sbjct: 237 QNMTDLLTAYRAFEANQKIMQAYDRSMDKAANEIG 271 >gi|312882658|ref|ZP_07742395.1| flagellar basal body rod protein FlgF [Vibrio caribbenthicus ATCC BAA-2122] gi|309369619|gb|EFP97134.1| flagellar basal body rod protein FlgF [Vibrio caribbenthicus ATCC BAA-2122] Length = 248 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 15/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR ++ + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRAD-LEQARSMQAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD +EG W ++ G LTR+G K+ +G L+ SG Sbjct: 59 TERPGQNFRQGSVITTGRDLDVTIEGLGWISVLDKTGKEGLTRNGNLKIDSNGLLL--SG 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL S PI +P +G G IS + ++ + L + D + + Sbjct: 117 ENLVLGEGSDPITLPIPLSKVEIGSDGTISVVPQGAPADAIEIVDRIKLTNTDN-RSLFK 175 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P E V + +G +E SN +++ EM +I L ++F L+ E Sbjct: 176 DINGLFRSKDPNAQYEIDGNVKLLKGAIEGSNVSAIGEMTSLIDLQRQFEMQVKLMSTAE 235 Query: 232 KSMLEA 237 M +A Sbjct: 236 D-MDKA 240 >gi|121997318|ref|YP_001002105.1| flagellar basal-body rod protein FlgF [Halorhodospira halophila SL1] gi|121588723|gb|ABM61303.1| flagellar basal-body rod protein FlgF [Halorhodospira halophila SL1] Length = 246 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 15/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + N++N T GFR F + ++ Sbjct: 1 MDRQLYVAMTGAKHSLEAQHHNNQNLANASTPGFRADLDSF--YQAPVYGPGFATRAYAE 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG +LD A++ + WF +++P G TR G F+ T +G L + G Sbjct: 59 ELRAGTDFNPGPIETTGRDLDVAIQDEGWFVVQAPDGDEAYTRRGDFQTTPEGLLTTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-------VIATMGLYSVDMSQGFVRR 172 V+ A PI IP D ++ + G I+ + + + L + D +Q + + Sbjct: 119 HM-VMGEAG-PISIPP-DTKVDIADDGVITATPQGGAGAPIELDRLRLVNPDPTQ--LVK 173 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ + P D + V V+ G LE SN N + MI ++F + ++ E+ Sbjct: 174 GEDGLIRHAEGEPAADDAQVRVRGGALEGSNVNMAESLVNMIDHARQFETHIKMLTAAEE 233 Query: 233 S 233 + Sbjct: 234 N 234 >gi|90423017|ref|YP_531387.1| flagellar basal body rod protein FlgG [Rhodopseudomonas palustris BisB18] gi|90105031|gb|ABD87068.1| Flagellar basal-body rod FlgG [Rhodopseudomonas palustris BisB18] Length = 262 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 94/264 (35%), Gaps = 31/264 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T GF+ + F +++ + + S Sbjct: 1 MRALYTAATGMAAQELNVQVISNNIANMRTTGFKKQRAAFQDLIYDHVRRVGAQASDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 V + G+ +TG +LD A+ G+ +F ++ P G TRDG F Sbjct: 61 ILPVGVDIGGGVKTVGTPRLMTQGTLSTTGNDLDLAVRGEGFFKIQMPDGTYSYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + G +V+++G I IP + G++S V+ + L Sbjct: 121 TTDNTGRVVTSNGN-----PLQPTITIPTGASGITIASNGQVSVTVTGSTTPTVLGQISL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 G + ++ P +D +++ LE +N + E+ +I Sbjct: 176 TRFINKTGLQPQGDNLFIETGASGPPQDGIANADGYGDIQQQTLEQANVEVVTEISDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + ++ ++ + Sbjct: 236 AQRAYEMNAKVVSAADQMLQSTSN 259 >gi|219670131|ref|YP_002460566.1| hypothetical protein Dhaf_4121 [Desulfitobacterium hafniense DCB-2] gi|219540391|gb|ACL22130.1| protein of unknown function DUF1078 domain protein [Desulfitobacterium hafniense DCB-2] Length = 251 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 22/256 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKN-----DI 52 M G A LA + + +ADN++N T G++ + F E++ N Sbjct: 1 MIKGLYTGAAGMLAAQTQSEIIADNVANIRTPGYKGEESSNKAFPEMLMMRTNTENEIPG 60 Query: 53 DQKISFVASGKEYLSKE----VGSFISTGTELDFALEGDA-WFALESPRGIILTRDGRFK 107 + I + +G G +T D AL + + +++P G TR+G+ + Sbjct: 61 NTLIGGIGTGVVVDQITRMNVQGVLQTTDIPTDLALTAEEVFLVVDTPNGERYTRNGQLQ 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 + +G L +A G YPVL I + F V +G I+ +G + + L + + Sbjct: 121 LNSEGMLQTADG-YPVLGEEGP---IGPLSKNFQVDAQGGITDQGVTMDRLRLVQIP-AV 175 Query: 168 GFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 G +R S + N P++D +G V +G LE SN N +M +MI + + + + + Sbjct: 176 GLLREGQSLYASN---QPVQDFAGNEAVLQGTLEGSNVNLPGQMVKMITVMRAYEANQKV 232 Query: 227 IDENEKSMLEAIRNIA 242 I ++ ++ +A+ I Sbjct: 233 IQTHDATLEKAVNEIG 248 >gi|71735751|ref|YP_275560.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627765|ref|ZP_06460719.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651644|ref|ZP_06482987.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aesculi str. 2250] gi|71556304|gb|AAZ35515.1| flagellar basal-body rod protein FlgF [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325095|gb|EFW81164.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. glycinea str. B076] gi|320329354|gb|EFW85347.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. glycinea str. race 4] gi|330866424|gb|EGH01133.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880528|gb|EGH14677.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. glycinea str. race 4] gi|330889082|gb|EGH21743.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. mori str. 301020] gi|330986470|gb|EGH84573.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011044|gb|EGH91100.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 246 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSAGAMVETGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + +G G IS Q + + L D+ + Sbjct: 119 -LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--ME 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ E Sbjct: 174 KGPDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 EDDQSMARVL 243 >gi|253573527|ref|ZP_04850870.1| flagellar basal body rod protein FlgG [Paenibacillus sp. oral taxon 786 str. D14] gi|251847055|gb|EES75060.1| flagellar basal body rod protein FlgG [Paenibacillus sp. oral taxon 786 str. D14] Length = 274 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 109/273 (39%), Gaps = 36/273 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + +L + +N++N +TVGF++ +V F +++ + + + Sbjct: 1 MLRSMYSGVSGMRGFQTKLDVIGNNIANVNTVGFKSGRVMFKDIMSQTVSGVTAPVDGES 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGI--ILTRDG 104 V+ G GS ++T LD ++GD +F ++ +P LTR G Sbjct: 61 GGVNAKQIGLGVSIGSIDTLHTGGSAMTTNNPLDMRIDGDGFFLVKLTPDQEVPFLTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASV--PIQIPQKDEIFNVGEKGEISQKGKVIAT----- 157 F + G LV++ G V PI + F + G + K T Sbjct: 121 DFHLDAAGQLVTSDGLLVCNSDGDVMEPIDF-EAVTAFTIASDGTMMLKNPEGGTDPGEI 179 Query: 158 MGLYSVDMSQGFVRRENS-----------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +G+ V +G + + G P E+ +G + G LE SN + Sbjct: 180 IGVARVTNPEGLEKIGGNLYRVTLNAIADGELTYTNPNNAEEGTGALIV-GQLEMSNVDL 238 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +MI + F + + +I +++ + E + Sbjct: 239 TGEFTEMIVAQRGFQANSRIITTSDEVLQEVVN 271 >gi|302185581|ref|ZP_07262254.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. syringae 642] gi|330953725|gb|EGH53985.1| flagellar basal body rod protein FlgF [Pseudomonas syringae Cit 7] Length = 246 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSAGAMVQTGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + +G G IS Q + + L D+ + Sbjct: 119 -LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--ME 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ E Sbjct: 174 KGPDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 EDDQSMARVL 243 >gi|85706167|ref|ZP_01037262.1| flagellar basal-body rod protein FlgG [Roseovarius sp. 217] gi|85669331|gb|EAQ24197.1| flagellar basal-body rod protein FlgG [Roseovarius sp. 217] Length = 261 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 110/264 (41%), Gaps = 34/264 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDIDQKI 56 I A + R+ T+++N++N T G+ + +F+++ D Sbjct: 4 LKIAATGMAAQQMRVETISNNLANMSTTGYNARRAEFADLHYQQLARAGTINATDGTVLP 63 Query: 57 SFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 + V G + GS T +LD A+EG+ + + P G TRDG K + Sbjct: 64 TGVQLGLGVRPAAISVQLAQGSLSQTNGDLDVAIEGNGYLEVTLPSGQAAYTRDGALKRS 123 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 DG +V++ G +PV I IP+ + +GE+ + + + + + L Sbjct: 124 ADGIIVNSEG-FPVAPE----ITIPEDARSITINAEGEVFAFFQDNAEAQQLGQLDLAGF 178 Query: 164 DMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 +G + E P T +D G T+++G+LEDS+ + + E+ ++I Sbjct: 179 SNPKGLEAIGSNLFVETEASGPANVTTAGQDGLG-TLRQGYLEDSSVDPVREITELIEAQ 237 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + + +I ++ ML A + Sbjct: 238 RGYELNAKVITAADQ-MLSATTQV 260 >gi|332305616|ref|YP_004433467.1| flagellar basal-body rod protein FlgF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172945|gb|AEE22199.1| flagellar basal-body rod protein FlgF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 247 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + + A+N++NT T GFR +++ + + A + + ++ F Sbjct: 1 MDKLLYIAASGAKQDLLGTAVRANNLANTQTTGFRA-QLEQARSMPAFGDGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + E G+ I T LD A++G+ W ++ G +R+G +++ DG L +SG Sbjct: 59 TENPANNFEGGAMIQTERNLDVAIQGEGWLSVLDANGAEAYSRNGSLQISADGQLQDSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 V + P+ +P N+ G IS + + + + L + D+ V Sbjct: 119 NSIVGEFG--PVFLPIPLSNINIAGDGTISVRPQGAPETVLEEVGRLKLVNPDLDN--VE 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R N G+ + V+++ G LE SN N + EM MI L + + + E Sbjct: 175 RGNDGLFRQKDGELAQFDPTVSIRNGMLEGSNVNPVEEMVDMISLQRHYEMQVKFMKEAS 234 Query: 232 KSMLEAIRNI 241 + + Sbjct: 235 D-LDSRANQL 243 >gi|224825165|ref|ZP_03698271.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002] gi|224602836|gb|EEG09013.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002] Length = 246 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 102/251 (40%), Gaps = 16/251 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + +T + N++N T G++ +V F + + D ++V Sbjct: 1 MDRMIYLAMTGAKHVMTQQATTSQNLANVHTNGYKADQVSFRAL--PVVGDGAPTRTYVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 GS TG + DFAL +F +++ G +RDG F +G L + SG Sbjct: 59 DNTIGHDLSQGSLQQTGNDTDFALGTPGFFTVQTADGREAYSRDGGFVADPNGMLRTRSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATMGLYSVDMSQGFVR 171 P+L PI +P + +G G + + ++ + L + V Sbjct: 119 -LPILGDGG-PITVPTGSSVV-IGPDGTVVTTPTSGADRTPQIAGQLKLVNPGERA--VY 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ V V G LE SN N++ + QMI ++F+ L+ ++ Sbjct: 174 KGEDGLFRLNAGGNATASDDVKVVSGALEGSNVNAVESLVQMISHARQFDLNVKLMQTSD 233 Query: 232 KSMLEAIRNIA 242 ++ +A + +A Sbjct: 234 QNEQKASQILA 244 >gi|148926662|ref|ZP_01810343.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845181|gb|EDK22276.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 270 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 113/269 (42%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ + + +L + +N++N +T G++ V ++ I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 FV + +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDRIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNADIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|239815249|ref|YP_002944159.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] gi|239801826|gb|ACS18893.1| flagellar basal-body rod protein FlgG [Variovorax paradoxus S110] Length = 262 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 105/267 (39%), Gaps = 33/267 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + I A + + T+A+N++N +T GF+ KV FS+++ + Q Sbjct: 1 MFDALYISATGMQAQQLNVDTIANNLANVNTTGFKKSKVGFSDLMVREAGRLAQTPQEAG 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V ++G T + D A++G+ + + P G TR G F Sbjct: 61 ILGAESRLGAGVGIASVSKLFDMGDLKKTESAFDIAIQGEGFLEVTMPDGSSSFTRGGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 KV DG L ++ G +P+ + IP + + G + G+ + + L Sbjct: 121 KVNRDGLLATS-GGFPLKSN----VAIPDNAQNMQIDGDGRVRVQVGGQSTPIEVGQLDL 175 Query: 161 YSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + ++ G I ED G + +GFLE SN EM ++ Sbjct: 176 VRFTSPSALLPQGDNLYRSSTGSGEAIAAKASEDGMG-SFAQGFLEGSNVKLTEEMVNLM 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ +++ ML I + Sbjct: 235 VAQRVYEANVKVMQASDE-MLGMINGL 260 >gi|118588710|ref|ZP_01546118.1| Flagellar basal body rod protein [Stappia aggregata IAM 12614] gi|118438696|gb|EAV45329.1| Flagellar basal body rod protein [Stappia aggregata IAM 12614] Length = 226 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 12/227 (5%) Query: 22 VADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQKISFVASGKEYLSKEVGSFIST 76 +A+NM+N +T GF++ + F+E V + + D+ IS+V G T Sbjct: 2 IANNMANINTSGFKSQNLHFAEYVMPVADGSAFEPQDRAISYVDMFTTRTDFTHGPIKMT 61 Query: 77 GTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G E D +L D +FA++ P G TR G F++ G L+SA G PV+ PI Sbjct: 62 GNEFDLSLNSDGFFAVQMPDGTEAYTRSGAFRLDSTGQLISADGS-PVMTDQG-PISFNA 119 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK 195 +D + + G IS + + + + + + + N+ + P P ++ V + Sbjct: 120 EDGRVEIAQDGTISTRLGIRGRIKVVDFEDPRTLEKIGNT-MFKGEDPIPAQE---VRMV 175 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +G +E SN + E+ ++I +T+ ++S ++ + ++ +AI + Sbjct: 176 QGAVEGSNVYGITEVTRLIEVTRAYDSTAKIVKDLDELRQQAISTLG 222 >gi|27380938|ref|NP_772467.1| flagellar basal body rod protein FlgF [Bradyrhizobium japonicum USDA 110] gi|27354104|dbj|BAC51092.1| flagellar basal-body rod protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 120/253 (47%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----DIDQK 55 MQ + IGL+ Q+ LE+++ +A+N++N +T GF+ F E + + D++ Sbjct: 1 MQNALLIGLSRQMTLERQMDVIANNVANANTNGFKADHSLFEEFLNSNAREDNFVGSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 +S+V + G +T LD A+ G+A+FA+++ TRDG+F ++ G LV Sbjct: 61 VSYVQDRGTFRDVGQGPMEATNNPLDMAINGNAFFAVQANGAERYTRDGKFTLSSTGQLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF 169 ++ G VL A PI D N+ G ++ + + + + D Sbjct: 121 TSDGNL-VLGTAG-PITFQPTDHDINIAPDGTVTVLEGTAKTDSIRGKIRMVTFDDPAKL 178 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + S ++ + TV++G++E SN NS+ EM +M+ + + + +I L+ + Sbjct: 179 TKLGANLYSAGSANQQVD--TKSTVQQGYIEKSNVNSVGEMSRMVEVMRSYTAIANLLQQ 236 Query: 230 NEKSMLEAIRNIA 242 AI +A Sbjct: 237 QSDLHKSAIEKLA 249 >gi|291540627|emb|CBL13738.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4] Length = 272 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 33/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + +A + + +++N+SN +TVG++ K++F ++ + Sbjct: 1 MMRALYTAATGMIAQQSNVDNISNNLSNVNTVGYKQEKMEFKSLLYQTIQTRTTSANGEE 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF- 106 V G S GS +++ DFA+ GD +FA+ G TR G F Sbjct: 61 KPISAQVGLGTRVASNTSIYTQGSLMASENATDFAISGDGFFAVRGADGKTYYTRAGDFV 120 Query: 107 -KVTDDGSLV--SASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEI---SQKGKVIA-- 156 V G+L + G YPVLD + PI +P E V E G++ + G + Sbjct: 121 WSVNAGGTLTLCTNEG-YPVLDSNNQPINLPAGISAEKVIVSENGKMGYTNAAGTYVDMN 179 Query: 157 -TMGLYSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 T+GL+ + G + + ++ + + +L+ V + +LE SN E Sbjct: 180 QTIGLFQFNNPGGLEKTGTNLLAVTPASGNAMNESTTANLTKSKVLQKYLEGSNVQVADE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M +I + + + I +++ + +A N+ Sbjct: 240 MVNLIIAQRAYQLNSKAITTSDEMLEQA-NNL 270 >gi|308050371|ref|YP_003913937.1| flagellar basal-body rod protein FlgF [Ferrimonas balearica DSM 9799] gi|307632561|gb|ADN76863.1| flagellar basal-body rod protein FlgF [Ferrimonas balearica DSM 9799] Length = 245 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 110/242 (45%), Gaps = 15/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + +L++ A+N++N + GF+ + + + A + ++ F Sbjct: 1 MDNYLYIAASGAKQNLHQLASHANNLANAKSDGFKADMSQ-ARAMQAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + + G+ +TG LD A++ WF ++ G LTR G + + G L+++ G Sbjct: 59 TERPATNFDPGAIKTTGRTLDVAIKDQGWFVVQDDGGNEALTRAGSLRFDEAGMLMNSEG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + P++ +A PI +P E + + G I+ + + + + L + ++ + Sbjct: 119 Q-PIMGLAG-PIFLPLPIEKVEIAQDGMITVRPQGAPANAMEEVGQLRLVNPPLNS--LT 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ + P + VT+ G +E SN N + E+ MI ++F+ L+ E Sbjct: 175 KGEDGLFRRLDGQPYANAVEVTLVTGAVEGSNVNPVNELVGMIEAQRQFDMQLKLMKTAE 234 Query: 232 KS 233 ++ Sbjct: 235 EN 236 >gi|319790435|ref|YP_004152068.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] gi|317114937|gb|ADU97427.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] Length = 238 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 12/242 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI-KVKFSEVVGAIKNDIDQKISFVA 60 QT + + + ALEQ L T +N++N +T GF+ I + + S+ V +D + F Sbjct: 6 QTIYLLAAGGERALEQ-LDTTTNNLANVNTPGFKRIIEEEMSQHVPPNGSDAYNMLIFPR 64 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G T + D AL+G +FA+++P G + TR+G F + +G LV A+G Sbjct: 65 FKSTQVVLSEGPLRKTDSPFDLALKGRGFFAVKTPNGELYTRNGHFTLNANGVLVDANGN 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 PVLD++ I + + V G + + + + + + NS Sbjct: 125 -PVLDISGKEIAL-SGNGKVTVTPDGLVFEGDRQVGVLKIVDF---AKVKPVGNSYY--- 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + V +GFLE SN N + EM +I ++F L + L Sbjct: 177 -QGVGAPTATDAEVLQGFLEGSNVNPVKEMVNLIEAQRRFEIYGNLTRALAQVDLRT-NE 234 Query: 241 IA 242 I Sbjct: 235 IG 236 >gi|315497882|ref|YP_004086686.1| flagellar basal-body rod protein flgf [Asticcacaulis excentricus CB 48] gi|315415894|gb|ADU12535.1| flagellar basal-body rod protein FlgF [Asticcacaulis excentricus CB 48] Length = 249 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 10/249 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK--VKFSEVVGAIKNDIDQKISF 58 M + + L+ QL L + L A+N++N +T G++ + V+ E A I +F Sbjct: 1 MDNASYVALSRQLVLRRELDVTANNLANMNTNGYKFEQLLVEPEEGRPAYNLPIRAPANF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTRDGRFKVTDDGSLVSA 117 G+ +TG + D +EG+ +F + G + TRDG F V+ G LV+ Sbjct: 61 AYDKGVGRDFSQGALTTTGGDYDVGIEGEGAFFVINGANGPLYTRDGAFTVSPQGVLVTG 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK----VIATMGLYSVDMSQGFVRRE 173 G PV I++ + ++ G +SQ+ + + + ++ Sbjct: 121 DG-LPVQGDGGE-IRLNPEFGAPSISADGVVSQRSTDGIVRVGRISVVRFASLSDLEKQG 178 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 ++ P + +++G +E SN N++ E+ +++ + + + S+T +I++ + Sbjct: 179 DNRFRATTNVAP-DPAPDARLRQGMIETSNVNALSEVTRLVEINRAYASVTKIIEQQAEL 237 Query: 234 MLEAIRNIA 242 A+ + Sbjct: 238 NRSAVERLG 246 >gi|89895707|ref|YP_519194.1| hypothetical protein DSY2961 [Desulfitobacterium hafniense Y51] gi|89335155|dbj|BAE84750.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 251 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 116/256 (45%), Gaps = 22/256 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVG---AIKNDIDQ 54 M G A LA + + +ADN++N T G++ + F E++ + +N+I Sbjct: 1 MIKGLYTGAAGMLAAQTQSEIIADNVANIRTPGYKGEESSNKAFPEMLMMRTSTENEIPG 60 Query: 55 KISFVASGKEYLSKEV------GSFISTGTELDFALEGDA-WFALESPRGIILTRDGRFK 107 G + ++ G +T D AL + + +++P G TR+G+ + Sbjct: 61 NTLIGGIGTGVVVDQITRMNVRGVLQTTDIPTDLALTAEEVFLVVDTPNGERYTRNGQLQ 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 + +G L +A G YPVL I + F V +G I+ +G + + L V + Sbjct: 121 LNSEGMLQTADG-YPVLGEEGP---IGPLSKNFQVDAQGGITDQGVTMDRLRLVQVP-AV 175 Query: 168 GFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 G +R S + N P++D +G V +G LE SN N +M +MI + + + + + Sbjct: 176 GLLREGQSLYASN---QPVQDFAGNEAVLQGTLEGSNVNLPGQMVKMITVMRAYEANQKV 232 Query: 227 IDENEKSMLEAIRNIA 242 I ++ ++ +A+ I Sbjct: 233 IQTHDATLEKAVNEIG 248 >gi|254488392|ref|ZP_05101597.1| flagellar basal-body rod protein FlgG [Roseobacter sp. GAI101] gi|214045261|gb|EEB85899.1| flagellar basal-body rod protein FlgG [Roseobacter sp. GAI101] Length = 261 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDID 53 + I A + R+ T+++N++N T G+ + +FS++ +D Sbjct: 1 MRALKIAATGMSAQQMRVETISNNLANMSTTGYNARRAEFSDLHYQQLARAGSVSASDGT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G + GS TG +LD A+EG + + P G TRDG Sbjct: 61 VLPTGVQLGLGVRPAAVSMQLAQGSLSVTGGDLDLAIEGKGFLEVTLPSGQAAYTRDGGL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 K T +G +V++ G +PV I IP+ ++ GE+ +++ + Sbjct: 121 KRTGEGLIVTSDG-FPVAPE----IVIPEDARSISINASGEVFAYFDGNIAAQLLGQFTM 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++G + + TP + G T+++G+LEDS+ +++ E+ ++I Sbjct: 176 SGFSNAKGLEAIGGNLFVETEASGAALVATPGLNGLG-TLRQGYLEDSSVDAVREITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ M + Sbjct: 235 EAQRGYEMNAKVISAADQMMGATTQ 259 >gi|307823532|ref|ZP_07653761.1| flagellar basal-body rod protein FlgF [Methylobacter tundripaludum SV96] gi|307735517|gb|EFO06365.1| flagellar basal-body rod protein FlgF [Methylobacter tundripaludum SV96] Length = 246 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 17/243 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S I ++ + A+N++NT T GF++ +F + + Sbjct: 1 MDRSLYIAMSGAKQTLLAQTANANNLANTQTSGFKSDLEQFRS--RPVSGAGFPTRVYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K + G+ +TG +LD A+ G+ + A++ G TR G +VT +G L + +G Sbjct: 59 NEKPGVDLSTGAMQTTGGDLDVAINGEGYLAVQGADGKEAYTRAGDLRVTPEGFLQTGAG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------QKGKVIATMGLYSVDMSQGFV 170 VL PI IP E ++G G IS I + + ++ G + Sbjct: 119 -LKVLGQDG-PINIPP-SEKLSIGSDGTISIIPLGSGNATTQVEIGRIKMVKLE--AGNL 173 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + N G+ P+ + V + +G LE SN N++ M MI L + F T ++ Sbjct: 174 EKSNDGLLHAKDGKPVVANADVKLAQGVLEGSNVNAISAMVDMIELARNFELQTKVMKSF 233 Query: 231 EKS 233 +++ Sbjct: 234 DEN 236 >gi|295697723|ref|YP_003590961.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295413325|gb|ADG07817.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 265 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 103/265 (38%), Gaps = 27/265 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----------AIKN 50 G + A ++ +A++ +N +T G+++ + FS+++ Sbjct: 1 MRVLWTGASGMSAASHWVNAMANDAANMNTTGYKSEDLAFSDLLAVHYAPGVRIPAPDTP 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK--V 108 S V + G TG +LD A EG+ +F + P G+ TRDG F+ V Sbjct: 61 PGLPVGSGVRAAARVSDWSQGPLQETGRKLDVAWEGEGFFVVSGPEGMRYTRDGSFQVSV 120 Query: 109 TDDGS--LVSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS----QKGKVIATMGLY 161 G LV+A G + VLD PI + D +G G I+ IA +G Sbjct: 121 DPAGQATLVTADG-HVVLDEYGAPIDLTGVDLSTLAIGPDGRITGSVAGTPTDIAVLGRV 179 Query: 162 SVDMSQGFVRRENSGIS-----PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 D Q ++ N+ P P + L +++G+LE SN M +++ Sbjct: 180 VFDHPQRLIKAGNNLYDAGTEVPLTPADIADPLRFGRLRQGYLEASNVELTDVMTKLMEA 239 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ M N+ Sbjct: 240 ERLYALSARAVLTADQMM-SMANNL 263 >gi|66046705|ref|YP_236546.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. syringae B728a] gi|63257412|gb|AAY38508.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Pseudomonas syringae pv. syringae B728a] gi|330899405|gb|EGH30824.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. japonica str. M301072PT] gi|330972415|gb|EGH72481.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975978|gb|EGH76044.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 246 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSAGAMVQTGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + +G G IS Q + + L D+ + Sbjct: 119 -LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVRPDLKT--ME 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ E Sbjct: 174 KGPDGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 EDDQSMARVL 243 >gi|58426791|gb|AAW75828.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 280 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 30 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 88 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 89 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 147 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 148 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 203 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + G T+ G LE SN ++ + +MI L ++F +I Sbjct: 204 RRPDGLMRNTSTDPAQAFTVATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 263 Query: 229 ENEKSMLEA 237 + + A Sbjct: 264 NGDDNAQSA 272 >gi|258592561|emb|CBE68870.1| Flagellar basal body and hook proteins [NC10 bacterium 'Dutch sediment'] Length = 245 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 11/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQ 54 M + + +A ++ ++ N++NT T GF+ + + + Sbjct: 1 MVSGLYTAASGLMAQMAKMEALSQNLANTGTPGFKGDLMVIEGGARGPLQSALLIEGRPE 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 V G+ G T LD A G +F +++P+G+ TR G F + +G L Sbjct: 61 GPQPVWIGRRVTDFGRGLIRETQNPLDLANSGPGYFVVQTPQGVRYTRAGNFAIDAEGHL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 + G V +QIP F V G I +G+ + + + D S +R Sbjct: 121 ETPDGS-RVQGKKGA-VQIP--GGRFIVDNSGRILVEGQEVDRLRIVDPD-STALIRGGG 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 S + V +++GFLE SN +++ M Q++ + + I ++S+ Sbjct: 176 SLFTLKPSAPEPPVAKTVEIRQGFLEGSNVDAVTAMTQIMVSLRASEAYQKAIHALDQSL 235 Query: 235 LEAIRNIA 242 +A + Sbjct: 236 NQAASELG 243 >gi|146307868|ref|YP_001188333.1| flagellar basal body rod protein FlgF [Pseudomonas mendocina ymp] gi|145576069|gb|ABP85601.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp] Length = 246 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L A+N++N T GFR + + + + F Sbjct: 1 MDKMLYVSMTGAQNNTLALRAHANNLANVSTSGFRRDFEQARSM--PLFGESYPARVFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS TG +LD A+ G W A+++P G R + G L + +G Sbjct: 59 SERPGTDFRAGSLQETGRDLDVAIGGKGWIAVQAPDGSEAYVRTASLNIDALGVLRTGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ A PI +P + + +G+ G IS + + + L + D + Sbjct: 119 -LPVMGNAG-PIAVPPE-QKVEIGQDGTISIRALGENPNVLAEVDRIKLVNPDPKS--LE 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ +E + V V GFLE SN N++ EM ++ L+++F ++ E Sbjct: 174 KGTDGLIRVKGQPEVEADATVQVTSGFLEASNVNAVEEMTAILSLSRQFELSVKMMRTAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 DNASAMARVL 243 >gi|57237000|ref|YP_178801.1| flagellar basal-body rod protein [Campylobacter jejuni RM1221] gi|86149760|ref|ZP_01067989.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|57165804|gb|AAW34583.1| flagellar basal-body rod protein [Campylobacter jejuni RM1221] gi|85839578|gb|EAQ56838.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|315058160|gb|ADT72489.1| Flagellar basal-body rod protein flgF [Campylobacter jejuni subsp. jejuni S3] Length = 270 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 113/269 (42%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ + + +L + +N++N +T G++ V ++ I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 FV + +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDRIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|301645415|ref|ZP_07245356.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] gi|301076299|gb|EFK91105.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 146-1] Length = 261 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 97/267 (36%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +A+N++N +T GF+ +V F ++ + Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G + ++ G I TRDG Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG L ++ G I +P GE G ++ + + L Sbjct: 121 QVNADGVLTNSQGL-----PLQPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ LE SN + + EM MI Sbjct: 176 VNFANPAGLSAEADNLYLETAASGQPTEGVPGEDGLG-TLQDNALEGSNVDIVNEMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLQYISQTL 261 >gi|283784086|ref|YP_003363951.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] gi|282947540|emb|CBG87093.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] Length = 261 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 95/261 (36%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +A+N++N +T GF+ +V F ++ + Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G + ++ G I TRDG Sbjct: 61 IMPTGMQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 ++ DG L ++ G I +P GE G ++ + + L Sbjct: 121 QINADGVLTNSQGL-----PLQPEIDVPAGATSVAFGEDGTVTAILPGDSDPTELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ LE SN + + EM MI Sbjct: 176 VNFANPAGLSAEGDNLYLETAASGQPTEGIPGEDGLG-TLQGNALEGSNVDIVNEMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + ++ + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLQ 255 >gi|217076898|ref|YP_002334614.1| flagellar basal-body rod protein FlgF [Thermosipho africanus TCF52B] gi|217036751|gb|ACJ75273.1| flagellar basal-body rod protein FlgF [Thermosipho africanus TCF52B] Length = 235 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 102/256 (39%), Gaps = 38/256 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------- 50 M + LA +L T+++N+SN +T+G++ + F + + Sbjct: 1 MYKGVYLASMGMLADITKLDTLSNNISNAETIGYKADNLAFKTYLEKRLHSFKPMPQEKK 60 Query: 51 ----DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 DI + V + G+ T LDFA++G +F +E + TR G F Sbjct: 61 VEIKDIGKFEQAVILDEVKTDFSQGNIEHTENMLDFAIDGSGFFVVEKNGEKLYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 K++ DG LV++ G Y VLD I+ + K +I + + +D Sbjct: 121 KISSDGFLVTSEGYY-VLDKNDQRIK---------------VFDKSDLINNIKVVDLDNP 164 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + G + +G++E SN + + EM +MI + + ++ Sbjct: 165 RKIGYTFYKGQEIEKE--------NFRILQGYVEKSNVDIVKEMVKMIEANRHYEVLSKA 216 Query: 227 IDENEKSMLEAIRNIA 242 + +++ + ++I + Sbjct: 217 VTVHDELLNKSINSAG 232 >gi|297538897|ref|YP_003674666.1| flagellar basal-body rod protein FlgF [Methylotenera sp. 301] gi|297258244|gb|ADI30089.1| flagellar basal-body rod protein FlgF [Methylotenera sp. 301] Length = 246 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ +T A N++N + GF+ F V + ++ +FV Sbjct: 1 MDRMIYTAMTGAKHILEQQATTAHNLANVTSTGFKAQVDSFRAV--PVISEGLATRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ ST +LD A++G W +++ G TR+G KV+++G L +A+G Sbjct: 59 DSTVGADFNPGAIQSTNRDLDVAIQGKGWLSIQRADGSEGYTRNGSLKVSENGILQTATG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 VL PI IP D +VG+ G +S V+ + L V+ + + Sbjct: 119 -LTVLGDGG-PISIPP-DVAVSVGKDGTVSTVANGAKPGASNVLGRLKL--VNPPEADLV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ P E + V V G LE SN N + M MI L ++F + L+ E Sbjct: 174 RAEDGLFVTSNGNPAEVDANVHVVGGALESSNVNVIDAMVSMISLARQFETQMKLMQSAE 233 Query: 232 KSMLEA 237 + +A Sbjct: 234 NNANKA 239 >gi|148380595|ref|YP_001255136.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 3502] gi|153933262|ref|YP_001384882.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. ATCC 19397] gi|153935902|ref|YP_001388351.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. Hall] gi|168180938|ref|ZP_02615602.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] gi|148290079|emb|CAL84198.1| putative flagellar basal-body rod protein [Clostridium botulinum A str. ATCC 3502] gi|152929306|gb|ABS34806.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 19397] gi|152931816|gb|ABS37315.1| flagellar basal body rod protein [Clostridium botulinum A str. Hall] gi|182668229|gb|EDT80208.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] Length = 263 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 114/263 (43%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M + + +A + +L ++++N++N +TVG++ V F E+V + Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 +I A+ + + G+ ++TG + D A++G +F + G R G F + Sbjct: 61 EIQTGTGVKATNWIRDTHQQGALLTTGNKTDLAIDGQGFFRVIMADGDYAYERSGNFLID 120 Query: 110 DDGSLVSASGKY---PVLDMASVPI--QIPQ-KDEIFNVGEKGEISQK-----GKVIATM 158 +G LV +G + + I +I N+ E G IS + KV+ + Sbjct: 121 RNGMLVDENGNALDIQLQQPEGMQILNRIGGFDANNINIAEDGSISVRDTDGLNKVVGKI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +Y+ + F+ + P + + V++ +GFLE+SN ++ EM +MI + Sbjct: 181 NIYNAVGADAFLSIGRNLYLPRDGVNVFVN-NDVSILQGFLENSNVDAGKEMTEMIITQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + I ++ M + N+ Sbjct: 240 AFELSSRGIKTADE-MWGIVNNM 261 >gi|170021358|ref|YP_001726312.1| flagellar basal body rod protein FlgG [Escherichia coli ATCC 8739] gi|188494741|ref|ZP_03002011.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|307136860|ref|ZP_07496216.1| flagellar basal body rod protein FlgG [Escherichia coli H736] gi|331640715|ref|ZP_08341862.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331671806|ref|ZP_08372602.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] gi|169756286|gb|ACA78985.1| flagellar basal-body rod protein FlgG [Escherichia coli ATCC 8739] gi|188489940|gb|EDU65043.1| flagellar basal-body rod protein FlgG [Escherichia coli 53638] gi|315616825|gb|EFU97442.1| flagellar basal-body rod protein FlgG [Escherichia coli 3431] gi|323181549|gb|EFZ66969.1| flagellar basal-body rod protein FlgG [Escherichia coli 1357] gi|331040089|gb|EGI12297.1| flagellar basal-body rod protein FlgG [Escherichia coli H736] gi|331070795|gb|EGI42154.1| flagellar basal-body rod protein FlgG [Escherichia coli TA280] Length = 261 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 97/267 (36%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +A+N++N +T GF+ +V F ++ + Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G + ++ G I TRDG Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG L ++ G I +P GE G ++ + + L Sbjct: 121 QVNADGVLTNSQGL-----PLQPEIDVPAGATNVAFGEDGTVTAILPGDSDATELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ LE SN + + EM MI Sbjct: 176 VNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLG-TLQDNALEGSNVDIVNEMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLQYISQTL 261 >gi|283834453|ref|ZP_06354194.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] gi|291070000|gb|EFE08109.1| flagellar basal-body rod protein FlgG [Citrobacter youngae ATCC 29220] Length = 261 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 32/261 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +A+N++N +T GF+ +V F ++ + Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G ++ ++ G I TRDG Sbjct: 61 IMPTGMQFGSGVRIVGTQKTFTEGNVETTDNTMNVAIMGQGFWQVQKANGDIAYTRDGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG L +A G I +P G +S + + L Sbjct: 121 QVNADGVLTNAQGL-----PLQPEIDVPAGSTQVAFAPDGTVSAILPGDSDPTELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ G LE SN + + EM MI Sbjct: 176 VNFANPAGLSAEGDNLYLETAASGQPTEGIPGEDGLG-TLQDGALEGSNVDIVNEMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSML 235 + + + ++ + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLQ 255 >gi|149184209|ref|ZP_01862527.1| Flagellar basal-body rod FlgG [Erythrobacter sp. SD-21] gi|148831529|gb|EDL49962.1| Flagellar basal-body rod FlgG [Erythrobacter sp. SD-21] Length = 243 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 30/248 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-------------FVASGKEY 65 + +A+N++N T GF+ + F+ + Q+ S VA Sbjct: 1 MRVIANNLANVGTTGFKRDRANFATLAYQDARVAGQRSSAETAYATGLNLGTGVAVQSTS 60 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ +T D AL+GD +F +E P G I TR G F ++ +G LV+ G Y V Sbjct: 61 QVMTQGALSTTSNAFDLALDGDGYFQIEMPGGRIGYTRAGNFTLSAEGQLVTQQG-YSVQ 119 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGFVRRENSGIS 178 I +P+ V G +S + + + G ++ + Sbjct: 120 PA----ITVPEGATAIAVSPDGTVSATLPGEAGPAELGQIQIARFTNPSGLQAIGDNFLV 175 Query: 179 PNIPP-----TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P + +++G LE SN N + E+ +MI + + + +I ++ Sbjct: 176 ETAASGAPELAPGGENGRGNIRQGMLESSNVNIVEELVEMIECQRAYEISSKMISAVDEM 235 Query: 234 MLEAIRNI 241 + A + + Sbjct: 236 LRNANQTL 243 >gi|304392506|ref|ZP_07374446.1| flagellar basal-body rod protein FlgG [Ahrensia sp. R2A130] gi|303295136|gb|EFL89496.1| flagellar basal-body rod protein FlgG [Ahrensia sp. R2A130] Length = 262 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 102/266 (38%), Gaps = 31/266 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--NDIDQKIS-- 57 + +I A ++ L +A N++N +T GF+ +V+F++++ + N I + + Sbjct: 1 MRALSIAATGMQAQQKNLDVIAHNIANINTTGFKRGRVEFTDLIYDTERLNGIPNRANSA 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + G TG D AL G+ WF +E+ G + R G F Sbjct: 61 NVPEGAHFGLGVRTASVRNVHLQGQVAQTGNRFDLALTGNGWFQIENAAGETVYQRSGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 G LV+ G I +P + G + + + + I + L Sbjct: 121 NTNGAGELVTQDGLRV-----QPGITVPDNTTDIFINASGAVFARVGGAAEQQEIGQLSL 175 Query: 161 YSVDMSQGFVRRENSGISP-NIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ + + P G T+++G+LE SN S+ E+ Q+I Sbjct: 176 ATFANDVGLTPLGDNLFAQSDASGEPQVGTPGDPGYATIRQGYLESSNVESVKEITQLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I + RN+ Sbjct: 236 AQRGYEMNSKVIQAADDMASIVSRNL 261 >gi|239817164|ref|YP_002946074.1| flagellar basal body rod protein FlgF [Variovorax paradoxus S110] gi|239803741|gb|ACS20808.1| flagellar basal-body rod protein FlgF [Variovorax paradoxus S110] Length = 248 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ ++ ++VA+NM+N T GFR F V + + ++V Sbjct: 1 MDRMLYVAMSGAKQAMEQQASVANNMANASTPGFRAQINSFRAVPVTDGAEATTR-AYVV 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG LD A+ GD W A+++P G TR G +V +G L + G Sbjct: 60 ATTPGADFSHGPLTETGRALDVAIHGDGWLAVQTPDGGEAYTRVGNLQVNAEGQLTTM-G 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV------DMSQGFVRRE 173 PV A + +P + G ++ +G +G+ V + + R Sbjct: 119 SLPVAGDAGA-LTVPPG-STVAIAANGLVTARGAGDPAIGIAEVGRLKLVNPPVADLVRG 176 Query: 174 NSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P E + VTV G +E SN N + M MI + F + ++ Sbjct: 177 ADGLFRMREGLAPAEPDAAVTVTTGAVEGSNVNGVEAMVAMIANARSFEMQMKSMHSADE 236 Query: 233 SMLEA 237 + A Sbjct: 237 NAQSA 241 >gi|260568536|ref|ZP_05839005.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] gi|260155201|gb|EEW90282.1| flagellar basal body rod protein [Brucella suis bv. 4 str. 40] Length = 202 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 15/216 (6%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G LVS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDLVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +LD+ P + G I Q G + +GLY++ SG+ P Sbjct: 118 N-AILDVGGAP----------RISSDGAIYQNGVQVGVIGLYTIPADADLAYAGTSGVIP 166 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + P P+ D + V V +G +E SN ++M EM ++I Sbjct: 167 SKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLIS 202 >gi|88596898|ref|ZP_01100134.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218562336|ref|YP_002344115.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|88190587|gb|EAQ94560.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112360042|emb|CAL34834.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925953|gb|ADC28305.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315926811|gb|EFV06185.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 270 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 110/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|153940763|ref|YP_001391938.1| flagellar basal body rod protein FlgG [Clostridium botulinum F str. Langeland] gi|152936659|gb|ABS42157.1| flagellar basal body rod protein [Clostridium botulinum F str. Langeland] gi|295319958|gb|ADG00336.1| flagellar basal body rod protein [Clostridium botulinum F str. 230613] Length = 263 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 112/263 (42%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M + + +A + +L ++++N++N +TVG++ V F E+V + Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 +I A+ + + G ++TG + D A++G +F + P G R G F V Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMPDGNYAYERSGNFVVD 120 Query: 110 DDGSLVSASGKY---PVLDMASVPIQIPQKD---EIFNVGEKGEISQK-----GKVIATM 158 +G LV +G + A I N+ E G IS K K++ + Sbjct: 121 RNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGMNKMVGKI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +Y+ S FV + P + + V++ +GFLE+SN ++ EM +MI + Sbjct: 181 NIYNAVGSDAFVSIGRNLYIPQEGVNVFTN-NDVSILQGFLENSNVDAGKEMTEMIITQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + I ++ M + N+ Sbjct: 240 AFELSSRGIKTADE-MWGIVNNM 261 >gi|86151576|ref|ZP_01069790.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 260.94] gi|157414984|ref|YP_001482240.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|85841205|gb|EAQ58453.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 260.94] gi|157385948|gb|ABV52263.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747621|gb|ADN90891.1| Flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni M1] gi|315931896|gb|EFV10851.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 327] Length = 270 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 110/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|310816831|ref|YP_003964795.1| flagellar basal-body rod protein FlgG [Ketogulonicigenium vulgare Y25] gi|308755566|gb|ADO43495.1| flagellar basal-body rod protein FlgG [Ketogulonicigenium vulgare Y25] Length = 261 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 107/265 (40%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 +I LA + R+ +++N++N +T + + +F+++ Sbjct: 1 MRILDIAATGMLAQQTRVEVISNNLANMNTTAYNPRRAEFADLHYQQVQRAGTVAATDGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V + G+ TG LD A+EG +F + P G I TRDG Sbjct: 61 ILPTGIQLGMGVRTTAVSPMLGQGAVQETGGSLDVAIEGQGYFEVALPDGRIGYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGL 160 K+T DG +V+A G + I IP+ + + GE+ + + + + L Sbjct: 121 KLTGDGLIVTAGGL-----EVAPGIVIPEDAQSVAINADGEVYASFTNAVEQEFLGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E + + P ED G T+++G+LE S +++ E+ +I Sbjct: 176 AMFVNPRGLEAMGSNLYLETAASGQPMVAVPGEDGLG-TLRQGYLEQSTVDAVREVTDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ + ++ Sbjct: 235 AAQRGYELNSKVISAADQMLAAMVQ 259 >gi|289548727|ref|YP_003473715.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] gi|289182344|gb|ADC89588.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] Length = 241 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 20/244 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--------EVVGAIKNDIDQKI 56 + + + +++L + +NM+N T F+ + S V Sbjct: 8 MYVLASGMMLSQRKLEVITNNMANVSTPSFKRDVMLASVWQAPTPLSVPSVDPRLPQNNF 67 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + G Y G TG D A++GD +FA+ S ++ TR G F++ DG LV+ Sbjct: 68 LYPVVGGIYTDLRQGGLRHTGNSTDLAIDGDGFFAVSSGNEVLYTRKGNFRLDKDGYLVN 127 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G +L P+++ D + E G I G +G+Y ++ Q + + Sbjct: 128 ELG-MRILTDNGSPVRV---DGDLRITEDGSIFSGGLFYGRLGIYRLEGPQ---KIGSDL 180 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ V +GFLED+N N + E+ ++I + T LI ++ + Sbjct: 181 FRGRATPS-----ERFKVLQGFLEDANVNPIEELVKLIEAHRAHEIYTNLIRSLDQLQEK 235 Query: 237 AIRN 240 Sbjct: 236 ITNQ 239 >gi|205355539|ref|ZP_03222310.1| putative flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346773|gb|EDZ33405.1| putative flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 270 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 110/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNSAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|325982370|ref|YP_004294772.1| flagellar basal-body rod protein FlgF [Nitrosomonas sp. AL212] gi|325531889|gb|ADZ26610.1| flagellar basal-body rod protein FlgF [Nitrosomonas sp. AL212] Length = 247 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + +TVA N++N T G+R+ F V + D +FV Sbjct: 1 MDRLIYTSMTGANHTLNQQATVAHNLANASTTGYRSETNAFRAV--PLFGDGLPTRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G +TG +LD A+ G W +++ G TR+G +V +G L++ +G Sbjct: 59 DSTTGSDFTTGPLETTGRDLDVAIRGPGWISVQLDNGEEAYTRNGSLQVGPNGLLLTQNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 V V I +P + +G G +S ++ + L V+ + + Sbjct: 119 -LKVKGDTGV-ISVPPETR-ITIGVDGTVSTVPLNALPNTVAIVGRIKL--VNPPEESLV 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ + V + G LE SN N ++EM MI L ++F+ +++ E Sbjct: 174 KGADGLFRQKDGKEALVDARVRLIDGTLEGSNVNVVHEMVSMIALARQFDMQMKMLENAE 233 Query: 232 KSMLEA 237 ++ +A Sbjct: 234 RNAQQA 239 >gi|86153287|ref|ZP_01071491.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843013|gb|EAQ60224.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 270 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGICIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|301168505|emb|CBW28095.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 261 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 100/266 (37%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M + N A E +ST+++N++N +T G++ + + ++ + + Sbjct: 1 MLRALNTAATGMAAQEMNVSTISNNIANVNTTGYKKQRTEIQDLSYQTIQEAGSRSSADT 60 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S GS T D + G+ +F + P TRDG F Sbjct: 61 MNNVGVQIGSGAKVSGVRKEFTQGSQQITNNPYDLMISGEGFFGIMMPNNEVRYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 V G+LV+ G Y V P + ++ G + + ++ + + Sbjct: 121 SVDASGTLVNKQG-YRVFPSF----VFPPGTKSVHIAHDGTVEAYLSNQIEPTILGQIPV 175 Query: 161 YSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIH 215 ++ G N +++++G T+ +G LE SN + M EM +I Sbjct: 176 FTFINPVGLKSTGMNLYTITRSSGQAIQNIAGNANAGTIAQGALESSNVSIMNEMTSLIK 235 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ ++ ML+ + NI Sbjct: 236 AQRAYEMNSKVMGVADQ-MLQTVNNI 260 >gi|283956106|ref|ZP_06373593.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792426|gb|EFC31208.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 1336] Length = 270 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 110/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGVQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|209695761|ref|YP_002263691.1| flagellar basal body rod protein FlgF [Aliivibrio salmonicida LFI1238] gi|208009714|emb|CAQ80018.1| flagellar basal-body rod protein FlgF [Aliivibrio salmonicida LFI1238] Length = 241 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 14/242 (5%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++ Q + ++N++N T GFR ++ + + A + ++ F + + + Sbjct: 1 MSGAKQNMQAMQLSSNNLANVSTTGFRAD-LEQARAMQAYGEGLPSRV-FSMTERPGQNF 58 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 GS I+TG +LD +EGD W ++ G LTR G K+ + G L++ SG + V+ Sbjct: 59 AQGSVITTGRDLDLTIEGDGWISVMDNTGREGLTRAGNLKIDETGLLMNGSG-HLVMGEN 117 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVRRENSGISP 179 + PI +P + + G IS + + + L D + + N Sbjct: 118 NAPITLPLPISKIQIAKDGTISVLEQGAPAEAMAEVDRIKLVKTDN-RDLFKDTNGLFRS 176 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + + VTV +G LE SN N++ EM +I L ++F ++ E+ M +A Sbjct: 177 KNPNNAFQADASVTVLKGALEGSNVNAVGEMTNLIDLQRQFEMQVKMMSTAEE-MDKASS 235 Query: 240 NI 241 ++ Sbjct: 236 SL 237 >gi|262653|gb|AAB24739.1| flagellar basal body distal rod protein [Caulobacter vibrioides] Length = 262 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 97/271 (35%), Gaps = 38/271 (14%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + + A + + +++N++N +TVGF+ + +F +++ Sbjct: 1 MQALRTAASGMAAQQLNVEVISNNIANMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V +G Y E G+ T + LD A++G + + P G TR G F Sbjct: 61 IVPTGVQVGGGVKAGSVYRITEQGTPTLTDSPLDLAIQGKGYMPILLPSGETAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 D G +V+ G I IPQ + + G + K + + + L Sbjct: 121 STNDQGQIVTEDGYLV-----QPGITIPQNATDITISKSGLVQVKLDGQPQPQTVGQIQL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFL--------EDSNANSMYEMGQ 212 + G ++ + V L E SN +++ E+ Sbjct: 176 ANFLNEGGLEAIGDNLFLETAASGAA---TLVRRASRALACCCSTDTEASNVDAVSEITA 232 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +I + + + +I ++ ML+A + S Sbjct: 233 LITAQRAYEMNSKVISTADQ-MLQATSQLRS 262 >gi|192290682|ref|YP_001991287.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1] gi|192284431|gb|ACF00812.1| flagellar basal body rod protein [Rhodopseudomonas palustris TIE-1] Length = 244 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 8/231 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M IGL+ +AL+Q++ +A N++N +T GF+ ++F E + K K Sbjct: 1 MSDKTVIGLSRLIALQQQVDNLARNVANQNTTGFKREGIRFLEYLTDAKEADDIPSAPKR 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S VA Y GS TG D A+ D +F + + RG TR+G F + G LV+ Sbjct: 61 SLVAV-TGYTDFSAGSLQLTGNSTDAAVLEDGFFVVRTSRGDRYTRNGAFTLDKQGRLVT 119 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 SG + A+ I++P D ++G G IS +I + + D + V Sbjct: 120 LSGDLVL--AANGTIKVPLTDLNLSIGTDGTISTARSIIGRLRVVKFDDPRSLVAEGTGL 177 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + PP L + + + LE SN NS+ EM ++ T+ + + ++ Sbjct: 178 FASGSPPIEL-NAGSIRLATNALERSNVNSIREMSDLVAATRAYEQVANVV 227 >gi|78485810|ref|YP_391735.1| hypothetical protein Tcr_1469 [Thiomicrospira crunogena XCL-2] gi|78364096|gb|ABB42061.1| Flagellar basal-body rod protein FlgG [Thiomicrospira crunogena XCL-2] Length = 263 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 101/268 (37%), Gaps = 32/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + RL+T+++N++N +T ++T + +F++++ Sbjct: 1 MNRALYVAKTGLEAQDFRLATISNNLANANTYAYKTGRAEFNDLMYQNVRQPGAQATQNE 60 Query: 54 --------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDG 104 Q + V + G+ + T +LD +EG +F G I+ TRDG Sbjct: 61 ENTFPSGLQLGTGVKAIGVQKIHTQGNAMVTDNQLDVMIEGKGFFQALDQDGNIMYTRDG 120 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATM 158 F+V +G LV++SG I IP + G +S K + + Sbjct: 121 SFEVNQNGDLVTSSGYLV-----EPNINIPLNTTEVFISSDGVVSAKEPGNPQPIAVGQL 175 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L + G + + E ++ +G LE SN N++ E+ M Sbjct: 176 ELATFINPAGLEATGKNFYIETLASGAPNVKNPEIEEAGSLLQGALESSNVNTVEELIGM 235 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + I + M N+ Sbjct: 236 IEAQRTYEMNSKAISAADGMMQYLNNNV 263 >gi|292489132|ref|YP_003532019.1| flagellar basal-body rod protein FlgF [Erwinia amylovora CFBP1430] gi|292900251|ref|YP_003539620.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291200099|emb|CBJ47225.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291554566|emb|CBA22179.1| Flagellar basal-body rod protein flgF [Erwinia amylovora CFBP1430] gi|312173290|emb|CBX81545.1| Flagellar basal-body rod protein flgF [Erwinia amylovora ATCC BAA-2158] Length = 245 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 17/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++A A R + ++NM+N T GFR F V ++ + + V Sbjct: 1 MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAV--PVEGETIATRALVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 Y +G TG LD AL + W A+ P G TR+G +V DG+L S +G Sbjct: 59 DSTPYHDGTMGPLNHTGRSLDVALPQNGWLAVAMPDGTEAYTRNGAIEVDRDGAL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 YP++ P+ +P + + G ++ G + + L + + Sbjct: 118 -YPLMGD-GAPLTVPPQ-SAVTIAPDGTLTALGAGDDPTTVTPVGRLKLANASIQDLL-- 172 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ L + + + LE SN + + M +MI + F+ I + Sbjct: 173 HGDEGLFHPKAGDSLPADAALRLSPETLEGSNVSPVKAMTEMIATARSFDMNMKTIRTAD 232 Query: 232 KSMLEA 237 ++ +A Sbjct: 233 ENAKQA 238 >gi|239628977|ref|ZP_04672008.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519123|gb|EEQ58989.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 255 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 17/256 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--DIDQKISF 58 M S+ ++A A +Q L A+NM+N T G+++++ F++++ + Q Sbjct: 1 MNISYYTAVSAMNAFQQDLDVTANNMANVGTNGYKSMRSDFNDLLYTQMDMRPEAQVGHG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDD---G 112 V + + + G F TG LDFA+ G A+FA+++ TRDG F+++ Sbjct: 61 VKNNGPGTTFQQGIFRKTGRALDFAVSGKAFFAIQTSEDEEEPAYTRDGAFQISSTEDGN 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 L ++ G Y VLD PI++ K G+ + +GL+ + +G + Sbjct: 121 YLTTSDGSY-VLDWDGEPIELEYKAAEDGRGDDTGELDLDSIADRIGLFVCENPEGLIHA 179 Query: 173 ENSGISPNIPPTP-------LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 ++ ED +V LE SNA+ EM ++ + F + Sbjct: 180 GSNLFRTGEASGEWMSIEDLDEDQEKSSVMTRTLEMSNADMSTEMVNLMQTQRAFQLNSR 239 Query: 226 LIDENEKSMLEAIRNI 241 ++ ++ M E I N+ Sbjct: 240 IVSTADQ-MEEMINNL 254 >gi|332296517|ref|YP_004438440.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] gi|332179620|gb|AEE15309.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] Length = 251 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 20/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT------------IKVKFSEVVGAI 48 M + L +L +V +N++N T GF+ + F + G Sbjct: 1 MVRGIEAAAKGMITLSDKLDSVTNNLANISTPGFKRIIQNVSESENYPVNRVFLQSDGGR 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL--EGDAWFALESPRGIILTRDGRF 106 + + + + G T ++ D A+ +A+F +++P GI TRDG F Sbjct: 61 APFMGYLGNGSEISTQAVDLSAGGLEHTSSKFDVAITLNNNAFFQVQTPNGIRYTRDGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 + ++ LV+ G YPVL A+ PI I + + G I G+ T+G+ S+D Sbjct: 121 TLNNNDELVTQDG-YPVLSSANAPITI--DGQNVVISSDGSIQVDGQQTDTLGIVSLDNP 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 V + ++ + N + + S V +G+LE SN N++ EM MI L + + S Sbjct: 178 SLIVPQGSNLYNYNGQ---VVNASNFKVLQGYLESSNVNTVREMVDMIALERAYESGQKA 234 Query: 227 IDENEKSMLEAIRN 240 I + + + Sbjct: 235 IVTEDNETGQMLSQ 248 >gi|330961200|gb|EGH61460.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. maculicola str. ES4326] Length = 246 Score = 194 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSGGAMVQTGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + +G G IS Q + + L D+ + Sbjct: 119 -LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--ME 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ E Sbjct: 174 KGPDGLIHTKTGRPADVDATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 EDDQSMARVL 243 >gi|170680582|ref|YP_001742375.1| flagellar basal body rod protein FlgG [Escherichia coli SMS-3-5] gi|256020230|ref|ZP_05434095.1| flagellar basal body rod protein FlgG [Shigella sp. D9] gi|260853468|ref|YP_003227359.1| putative lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|293403357|ref|ZP_06647448.1| flgG [Escherichia coli FVEC1412] gi|293408369|ref|ZP_06652208.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|298378968|ref|ZP_06988849.1| flagellar basal-body rod protein FlgG [Escherichia coli FVEC1302] gi|300900357|ref|ZP_07118533.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300936128|ref|ZP_07151067.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|306813301|ref|ZP_07447494.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|307313517|ref|ZP_07593138.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|331645420|ref|ZP_08346524.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|332281392|ref|ZP_08393805.1| lateral flagellar rod protein [Shigella sp. D9] gi|59889782|emb|CAH19138.1| Lateral flagellar rod protein (FlgG-like) [Escherichia coli] gi|170518300|gb|ACB16478.1| lateral flagellar rod protein LfgG [Escherichia coli SMS-3-5] gi|257752117|dbj|BAI23619.1| predicted lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|284920046|emb|CBG33103.1| lateral flagellar rod protein (FlgG-like) [Escherichia coli 042] gi|291429210|gb|EFF02230.1| flgG [Escherichia coli FVEC1412] gi|291471547|gb|EFF14030.1| flagellar basal-body rod protein FlgG [Escherichia coli B354] gi|298280081|gb|EFI21585.1| flagellar basal-body rod protein FlgG [Escherichia coli FVEC1302] gi|300356125|gb|EFJ71995.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 198-1] gi|300458706|gb|EFK22199.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 21-1] gi|305854064|gb|EFM54503.1| flagellar basal body rod protein FlgG [Escherichia coli NC101] gi|306906685|gb|EFN37196.1| flagellar basal-body rod protein FlgG [Escherichia coli W] gi|315059544|gb|ADT73871.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli W] gi|323158101|gb|EFZ44200.1| flagellar basal-body rod protein FlgG [Escherichia coli EPECa14] gi|323171066|gb|EFZ56715.1| flagellar basal-body rod protein FlgG [Escherichia coli LT-68] gi|323191540|gb|EFZ76801.1| flagellar basal-body rod protein FlgG [Escherichia coli RN587/1] gi|323379897|gb|ADX52165.1| flagellar basal-body rod protein FlgG [Escherichia coli KO11] gi|323975928|gb|EGB71022.1| flagellar basal-body rod protein FlgG [Escherichia coli TW10509] gi|327254556|gb|EGE66172.1| flagellar basal-body rod protein FlgG [Escherichia coli STEC_7v] gi|331045582|gb|EGI17708.1| flagellar basal-body rod protein FlgG [Escherichia coli M605] gi|332103744|gb|EGJ07090.1| lateral flagellar rod protein [Shigella sp. D9] Length = 261 Score = 194 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 97/267 (36%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +A+N++N +T GF+ +V F ++ + Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G + ++ G I TRDG Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG L ++ G I +P GE G ++ + + L Sbjct: 121 QVNADGVLTNSQGL-----PLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ LE SN + + EM MI Sbjct: 176 VNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLG-TLQDNALEGSNVDIVNEMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLQYISQTL 261 >gi|238796905|ref|ZP_04640409.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC 43969] gi|238719165|gb|EEQ10977.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC 43969] Length = 251 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 100/257 (38%), Gaps = 23/257 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A A R V++N++N T GFR F V ++ Q + V Sbjct: 1 MDRAIYTAMGAANAALNRQGVVSNNLANASTTGFRAQLSAFRAV--PVEGPSVQTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 Y +G+ TG LD AL D W A+E P G TR G ++ +G L Sbjct: 59 ESTPYHDDSMGAINQTGRNLDVALPQDGWLAVELPDGGEGYTRAGNIEIDSEGLLKVR-- 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ PI +P + E + G I+ +G + + + + + + Sbjct: 117 GLPVIGDGG-PINVPPQSE-LTIAPDGTITARGAGEEPSALAQVGRLKMVNAKLQD--LS 172 Query: 172 RENSGIS------PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + G+ PN L + + G LE SN + + M MI + F+ Sbjct: 173 HGDDGLFHIAETSPNAGLAALPADQNLQLVPGALESSNVSPVKSMVDMIATARGFDMNMK 232 Query: 226 LIDENEKSMLEAIRNIA 242 +I + + +A + +A Sbjct: 233 VISAVDDNDKKANQLLA 249 >gi|149183418|ref|ZP_01861851.1| flagellar basal-body rod protein [Bacillus sp. SG-1] gi|148848863|gb|EDL63080.1| flagellar basal-body rod protein [Bacillus sp. SG-1] Length = 280 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 113/280 (40%), Gaps = 42/280 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M F + L+ +++ +++N+SN +T G++ + F E++ A++ Sbjct: 1 MLRGFYTVASGMLSQQRKTEMLSNNLSNANTPGYKADRSSMKAFPEMLLALQGQQQNIPT 60 Query: 52 -------IDQKISFVASGK----EYLSKEVGSFISTGTELDFALE-------------GD 87 I +++ + SG + G T D AL G Sbjct: 61 QNGLSLPISRQVGGLNSGVYMQETIPAFMQGDLQETERLTDIALVDGNIPADPETGLPGG 120 Query: 88 AWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 +F LE G TR+G F + G L SASG Y VLD IQ+P + F + E G Sbjct: 121 VFFTLEGADGAPRYTRNGNFTLDGQGYLTSASGLY-VLDTEGQRIQLPSDN--FKIAEDG 177 Query: 147 EISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED----LSGVTVKRGFLEDS 202 I +G ++ + +E G+ PL D + +++GF+E S Sbjct: 178 RILVDEVETGRLG-TGFTVNANRLAKEGDGLFRTEDNEPLADAYNSGATFNMQQGFIERS 236 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N ++ M M+ + F + ++ ++SM +A+ I Sbjct: 237 NVDTARTMTDMMTAYRAFEANQKILQAYDRSMEKAVNEIG 276 >gi|239995124|ref|ZP_04715648.1| flagellar basal-body rod protein FlgF [Alteromonas macleodii ATCC 27126] Length = 247 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 11/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + A+N++N T GFR +++ + + A + ++ F Sbjct: 1 MDKLLYISASGASQDLLGTGIRANNLANAQTTGFRA-QLEQARSMPAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + E G I T +LD A++GD WFA++ G +RDG FK+ DDG L Sbjct: 59 TESPSNNYESGPMIKTDRDLDVAIQGDGWFAVQDQNGQEAYSRDGNFKLGDDGILTDIH- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM----GLYSVDMSQGFVRRE 173 VL PI +P + N+ G +S Q G + L V + + R Sbjct: 118 DRVVLGDNG-PIFLPVPLDNLNIAADGTLSMRQLGAPANVIEEVGRLKLVSPNYADMERG 176 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 N G+ + + V V G LE SN N++ EM MI L + + ++ + E+ Sbjct: 177 NDGLFRMEDGSIAPANANVKVMSGMLEGSNVNAVDEMVDMISLQRHYELQVKMMKQAEE 235 >gi|315929130|gb|EFV08357.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 305] Length = 270 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 109/268 (40%), Gaps = 27/268 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIA 242 + ++ + + EAI +A Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLA 267 >gi|254421122|ref|ZP_05034846.1| flagellar basal-body rod protein FlgG [Brevundimonas sp. BAL3] gi|196187299|gb|EDX82275.1| flagellar basal-body rod protein FlgG [Brevundimonas sp. BAL3] Length = 262 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 104/260 (40%), Gaps = 33/260 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + + A + + +++N++N +TVGF+ + +F +++ + Sbjct: 1 MQALRTAASGMAAQQLNVEVISNNIANMNTVGFKKQRAEFQDLLYQNVERMGAQSSSQGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V +G Y E G+ TG + D A++G +F + P G I TR G Sbjct: 61 VVPTGIQIGAGVKAGAVYRVTEQGTPAQTGNDYDMAIDGKGYFQITLPSGEIGYTRAGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGK----VIATMGL 160 +V +G +V+ G + IPQ + + G +++Q G+ + + L Sbjct: 121 QVNQEGQIVTDDGY-----ALQPAVTIPQDATDVTISKSGLVQVTQAGQTAPTTVGQIEL 175 Query: 161 YSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G ++ + TP G + +G+ E SN +S+ E+ +I Sbjct: 176 ATFFNEAGLEAIGDNLLLETAASGAANIGTPGSPGFG-KILQGYTEASNVDSVAEISALI 234 Query: 215 HLTQKFNSITTLIDENEKSM 234 + + + +I + + Sbjct: 235 IAQRAYEMNSKVISTADNML 254 >gi|163744349|ref|ZP_02151709.1| flagellar basal-body rod protein FlgG [Oceanibulbus indolifex HEL-45] gi|161381167|gb|EDQ05576.1| flagellar basal-body rod protein FlgG [Oceanibulbus indolifex HEL-45] Length = 261 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 108/267 (40%), Gaps = 34/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + +I +A + + +++N++N +T GF+ + F +++ S Sbjct: 1 MKALSIAATGMMAQQTNVDVISNNIANANTTGFKASRAAFQDLIYQSMQREGALTSEAGS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 V + G ++T +L+ A++G +F++ P G TRDG F Sbjct: 61 TRPVGIDIGMGVQTAGTVRLNTQGGMVATENQLNVAIDGRGYFSVTLPDGNQAFTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +++ +G +V+ G Y V + +P+ + E+G + + + L Sbjct: 121 QLSPEGEIVTMQG-YRVEPG----LVVPENTTAVEINEQGVVMAYVENDPEPVELGQFSL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G N+ + P + +G+ +++G+LE SN N + ++ +I Sbjct: 176 TTFVNEPGMRPVGNNFLLATEASGEAQVVNPGDPGAGM-IRQGYLEASNVNVIQQITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + I+ ++ ML A I Sbjct: 235 SAQRAYEMNSKSIETADQ-MLSAANQI 260 >gi|220924578|ref|YP_002499880.1| flagellar basal-body rod protein FlgG [Methylobacterium nodulans ORS 2060] gi|219949185|gb|ACL59577.1| flagellar basal-body rod protein FlgG [Methylobacterium nodulans ORS 2060] Length = 263 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 91/263 (34%), Gaps = 33/263 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI----- 56 + A E + +++N++N T G++ + F +++ Sbjct: 1 MRALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQAHFQDLLYQNLRRAGSATSDQGN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V + G+ ST D A+ G+ +F + P G TRDG F Sbjct: 61 QLPAGLALGSGVKTTSTARVMSQGTLSSTEKTYDIAIRGEGFFQITLPDGRTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G +V+ G + I +P + G + + + + L Sbjct: 121 DLDSQGQIVTRDGYL-----INPSITVPNNATGVTISASGMVQATVPGQTAPQNLGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ P I P + G +++ +LE++N N++ E+ +I Sbjct: 176 ARFVNKVGLESIGDNLFTETLASGPAITGNPGAEGFG-NLQQSYLEEANVNAVTEISSLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + ++ ++ + Sbjct: 235 AAQRAYEMNSKVVTAADQMLSTT 257 >gi|297183135|gb|ADI19278.1| flagellar basal body rod protein [uncultured delta proteobacterium HF0200_39L23] Length = 258 Score = 194 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 21/242 (8%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------------------I 56 LE+++ TVA+N++N TVGF+ + F EV+ ++ + Q Sbjct: 14 LEKKIETVANNLANVSTVGFKEDQPSFREVLSTVQRVVPQSEEENFLSHEYLDEYVGMDK 73 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 S V + + G F TG ELD +LE + +F + +P+G TR G FK+ G +V+ Sbjct: 74 SAVMVDEIGKNFTTGRFRDTGNELDLSLENEGFFTITTPQGDRYTRAGNFKLDSQGRMVT 133 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G +P+L PIQI + + V E G++ +G ++ + + N Sbjct: 134 QDG-FPLLGKKG-PIQI-KGNGPIQVDENGQVVVEGTIMDQLKTVRFRNQDQLQKLGNHF 190 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 +P + V++G LE SN N++ EM +M++ T+ + + I + + Sbjct: 191 YAPIRSDDVPIPSREILVRQGMLEQSNVNTVMEMSRMVNATRSYEMVQKAIMNLDNIDEK 250 Query: 237 AI 238 AI Sbjct: 251 AI 252 >gi|83944163|ref|ZP_00956619.1| Flagellar basal body rod protein [Sulfitobacter sp. EE-36] gi|83845030|gb|EAP82911.1| Flagellar basal body rod protein [Sulfitobacter sp. EE-36] Length = 259 Score = 194 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 7/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ AL + + T A N++N T G++ I V D I++V Sbjct: 17 MSNISYVALSQATALTRSMDTTAHNLANATTSGYKAIHPVLESVPDGSG---DNAINYVR 73 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 YL G + TG +D A+ GD W + + P G +R GR V DG L +A G Sbjct: 74 ESGTYLELADGPLMQTGNPMDIAVAGDGWLSFQLPGGETGYSRHGRLVVDVDGQLKTA-G 132 Query: 120 KYPVLDMASVPIQIPQKDEI-FNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRENSGI 177 P+L + P+ +P + G ++ +G V+ + + +++ + + Sbjct: 133 GMPLLGVGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAINEAAQMLPMGAGMY 192 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + + VK+GF+E SN N++ EM ++I + + + + L+ ++ A Sbjct: 193 QLPPNAGQPQQMENPQVKQGFIEGSNVNAVLEMTRLIDIQRAYENSVKLMGSDDDLTRTA 252 Query: 238 IRNIA 242 I+ + Sbjct: 253 IQKLG 257 >gi|260866415|ref|YP_003232817.1| putative lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|257762771|dbj|BAI34266.1| predicted lateral flagellar component of cell-distal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|323178492|gb|EFZ64070.1| flagellar basal-body rod protein FlgG [Escherichia coli 1180] Length = 261 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 96/267 (35%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +A+N++N +T GF+ +V F ++ Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTLEAPGAMLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G + ++ G I TRDG Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG L ++ G I +P GE G ++ + + L Sbjct: 121 QVNADGVLTNSQGL-----PLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ LE SN + + EM MI Sbjct: 176 VNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLG-TLQDNALEGSNVDIVNEMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLQYISQTL 261 >gi|104782841|ref|YP_609339.1| flagellar basal body rod protein FlgF [Pseudomonas entomophila L48] gi|95111828|emb|CAK16552.1| flagellar basal-body rod protein FlgF [Pseudomonas entomophila L48] Length = 246 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKMLYVAMTGASQNALAQKAHANNLANVSTNGFQRDLEQARSM--PVFGDSFPARAFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G + TG ELD A+ GD + A+++P G R G + G L + +G Sbjct: 59 SERPATDFRAGPLVETGRELDVAVSGDGFMAVQAPDGSEAYVRTGSLNIDALGVLRAGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 V+ PI IP + + VG+ G IS + + + L + D+ + Sbjct: 119 -MAVMGNGG-PIAIPPQ-QKVEVGDDGTISIRAMGEDPRVMAEVDRIKLVNPDIKN--MT 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ P + V V GFLE SN N++ EM ++ L+++F ++ E Sbjct: 174 KGPDGLIHTKNGQPADADVNVRVVSGFLEGSNVNAVEEMTSVLALSRQFELHVKMMKAAE 233 Query: 232 KSMLEAIRNI 241 + R + Sbjct: 234 EGDQAMARVL 243 >gi|288574696|ref|ZP_06393053.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570437|gb|EFC91994.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 262 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 103/263 (39%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAI--------- 48 M G++A + + A+N++N DT GFR K F EV+ Sbjct: 1 MHKGIYAGVSAMMVQQGVTDCAANNLANVDTAGFRARKPIAKSFPEVLMERVDPAKGQGE 60 Query: 49 -------KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-II 99 + I + Y+S + G+ T + +D AL + + +F L+ G Sbjct: 61 IPPWPWRSHPIGNASMNQVLSETYMSTDEGNLQVTDSPMDVALTDEEGFFVLQDGEGNQF 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 +R G F V + G LV+ G V D PI + + + + G++ G +A + Sbjct: 121 YSRSGHFLVNEGGQLVNPDGYLLVGD--GGPIDV-GEAAAVSFTDDGQVIADGIAVAQID 177 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + + + + ++ + V G LE SN N + EM ++I + Sbjct: 178 IVGFESPTALRQMGKNLLAETEDSGAPAPVEVPQVAVGVLERSNVNVVEEMVRLIEAQRA 237 Query: 220 FNSITTLIDENEKSMLEAIRNIA 242 + + + I ++ + I ++A Sbjct: 238 YEAASKGIQTSDDMTGQLITSLA 260 >gi|148358807|ref|YP_001250014.1| flagellar basal body rod protein FlgF [Legionella pneumophila str. Corby] gi|296106852|ref|YP_003618552.1| flagellar basal-body rod protein FlgF [Legionella pneumophila 2300/99 Alcoy] gi|148280580|gb|ABQ54668.1| flagellar basal body rod protein FlgF [Legionella pneumophila str. Corby] gi|295648753|gb|ADG24600.1| flagellar basal-body rod protein FlgF [Legionella pneumophila 2300/99 Alcoy] Length = 248 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 114/250 (45%), Gaps = 17/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISF 58 M+ ++ + +R +A+N++N +T GF+ + + N +Q SF Sbjct: 1 MEPILYNSISGSRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGKNQFSAHSF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G I+TG +LD A++GD W A++ +G TR G ++ +G L++A Sbjct: 61 ITQNANGIDTSPGEIITTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNPNGQLITA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGF 169 SGK VL PI IP + +G G IS ++ + L ++D + Sbjct: 121 SGK-VVLGDGG-PISIPP-AQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNN-- 175 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + + G+ + S + ++ G LE SN N++ +M MI ++F++ L+ Sbjct: 176 IYKNDEGLIQLKSGAATAN-SNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLST 234 Query: 230 NEKSMLEAIR 239 + + + + Sbjct: 235 VDDNGQKLAQ 244 >gi|126653740|ref|ZP_01725658.1| flagellar hook protein [Bacillus sp. B14905] gi|126589704|gb|EAZ83840.1| flagellar hook protein [Bacillus sp. B14905] Length = 329 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 110/319 (34%), Gaps = 80/319 (25%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N +TVGF+ +V F +++ + + Sbjct: 8 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTVGFKKGRVLFKDLMSQTQAGASAATATRG 67 Query: 59 ------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG----------- 97 V G + + + GS STG LD A+EGD +F + G Sbjct: 68 GVNPQQVGLGTQLAAIDTIHGGGSLQSTGRGLDLAIEGDGFFMVADANGAPDPDSGFIDE 127 Query: 98 -----IILTRDGRFKVTDDGSLVSASGKYPVL---------------------------- 124 + TR+G F + +G LV+A GKY V Sbjct: 128 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGEDIVMEADDDGINPDDAPVASGDE 187 Query: 125 --------------DMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDM 165 D PI+IP + ++G G I + + K + + Sbjct: 188 GANLFDDDGVLTPDDGTVGPIRIPTTAKEISIGANGTIEYVDLNGERKWAGQLIMAKFPN 247 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGV-----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G + + V G +E SN + E +MI + F Sbjct: 248 AGGLAKSGGNYYQQTANSGAAYGQVATVAGMGKVVPGAVEMSNVDLSEEFTEMIVAQRGF 307 Query: 221 NSITTLIDENEKSMLEAIR 239 + T +I +++ + E + Sbjct: 308 QANTRIITTSDEVLQELVN 326 >gi|326792665|ref|YP_004310486.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] gi|326543429|gb|ADZ85288.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] Length = 271 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 32/273 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + + T+++NM+N +T ++ F ++ + + Sbjct: 1 MIRALYTAASGMTAQQLNVDTISNNMANVNTAAYKKETTNFKSLLYTTMGEANDPNAQTA 60 Query: 54 QKISFVASGKEYL----SKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFK- 107 + V G L G TG E D AL G+ +FA+ ++ + TRDG F+ Sbjct: 61 PTVKQVGHGVRALANSRDYTNGILQETGNESDLALVGNGFFAIGQTDGSEVYTRDGSFRF 120 Query: 108 --VTDDG--SLVSASGKYPVLDMASVPIQIPQ--KDEIFNVGEKGEISQKGKV-----IA 156 + D+G +LV+A G +PVL I + + +G+ G I + +A Sbjct: 121 AMIPDEGSYALVTADG-HPVLSTEGESIVVGTEIPMDKLEIGQDGNIYYLDETGLEMDVA 179 Query: 157 TMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + G + +E + + L+ T++ G+LE SN EM Sbjct: 180 QIRIVQFANRAGLEAVGDNLYKETPASGEPLAEVDDDGLTKTTIRTGYLEGSNVQIAQEM 239 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +I + + +T I + + +A + S Sbjct: 240 VNLIIAQRAYEINSTAIKAADDMLGQA-NQLKS 271 >gi|146278639|ref|YP_001168798.1| flagellar basal body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] gi|145556880|gb|ABP71493.1| flagellar basal-body rod protein FlgG [Rhodobacter sphaeroides ATCC 17025] Length = 261 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 104/265 (39%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + R+ +++N++N T G+ + F+++ Sbjct: 1 MKALQIAATGMSAQQTRVDVISNNLANMSTTGYNPRRADFADLHYQQMVRPGTVSAEDGR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q V + G+ T +LD A++G + + P G TRDG Sbjct: 61 MLPTGVQLGMGVRPSAVSVVLSQGALAQTRGDLDLAIDGRGYIEVTLPSGQSAYTRDGSL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGL 160 K + +G +V++ G + I IP+ + GE+ + +++ + L Sbjct: 121 KRSGEGLVVTSDGH-----EVAPGITIPEDAASVAINGSGEVWAYFSGQVQPQLMGQITL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +G + E + I TP ED G T+++G+LE+S+ +S+ E+ ++I Sbjct: 176 SGFANEKGLEAIGSNLFVETAASGAPIAGTPGEDGFG-TLRQGYLEESSVDSVQEITELI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + +I ++ + + Sbjct: 235 KAQRGYELNAKVITAADQMLAATAQ 259 >gi|170747256|ref|YP_001753516.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] gi|170653778|gb|ACB22833.1| flagellar basal-body rod protein FlgG [Methylobacterium radiotolerans JCM 2831] Length = 263 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 97/265 (36%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI----- 56 + A E + +++N++N T G++ +V F +++ Sbjct: 1 MRALYSAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQDLLYQNMRRAGASTSQQNT 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V + G+ ST + D A+ GD +F + P G +RDG F Sbjct: 61 QLPAGLSLGSGVKTTSTARVMSQGTLSSTEKDYDVAIRGDGFFRVTLPDGRTAYSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 ++ G LV+ G +LD A I +PQ + G + + + L Sbjct: 121 DLSAQGQLVTRDGY--LLDPA---ITVPQNATSVTISATGAVQANIPGQTAPQALGQFQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ I P D G +++ +LE++N N++ E+ +I Sbjct: 176 SRFVNKVGLESIGDNLFVETAASGQAISGLPGADGFG-NLQQSYLEEANVNAVTEISSLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + ++ ++ + + Sbjct: 235 AAQRAYEMNSKVVTAADQMLSTTTQ 259 >gi|332140547|ref|YP_004426285.1| flagellar basal-body rod protein FlgF [Alteromonas macleodii str. 'Deep ecotype'] gi|327550569|gb|AEA97287.1| flagellar basal-body rod protein FlgF [Alteromonas macleodii str. 'Deep ecotype'] Length = 247 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 11/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + A+N++N T GFR +++ + + A + ++ F Sbjct: 1 MDKLLYISASGASQDLLGTGIRANNLANAQTTGFRA-QLEQARSMPAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + E G I T +LD A++GD WFA++ G +RDG FK+ DDG L Sbjct: 59 TESPSNNYESGPMIKTDRDLDVAIQGDGWFAVQDQNGQEAYSRDGNFKLGDDGILTDIH- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATM----GLYSVDMSQGFVRRE 173 VL PI +P + N+ G +S Q G + L V + + R Sbjct: 118 DRVVLGDNG-PIFLPVPLDNLNIAADGTLSMRQLGAPANVIEEVGRLKLVSPNYADMERG 176 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 N G+ + + V V G LE SN N++ EM MI L + + ++ + EK Sbjct: 177 NDGLFRMEDGSIAPANANVKVMSGMLEGSNVNAVDEMVDMISLQRHYELQVKMMKQAEK 235 >gi|289666048|ref|ZP_06487629.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 251 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVLDEGGTPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 174 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + G T+ G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEA 237 + + A Sbjct: 235 NGDDNAQSA 243 >gi|168182721|ref|ZP_02617385.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|237796077|ref|YP_002863629.1| flagellar basal body rod protein FlgG [Clostridium botulinum Ba4 str. 657] gi|182674133|gb|EDT86094.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|229261217|gb|ACQ52250.1| flagellar basal body rod protein [Clostridium botulinum Ba4 str. 657] Length = 263 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 111/263 (42%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M + + +A + +L ++++N++N +TVG++ V F E+V + Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 +I A+ + + G ++TG + D A++G +F + G R G F + Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMSDGNYAYERSGNFVID 120 Query: 110 DDGSLVSASGKY---PVLDMASVPIQIPQKD---EIFNVGEKGEISQK-----GKVIATM 158 +G LV +G + A I N+ E G IS K K++ + Sbjct: 121 RNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGINKMVGKI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +Y+ S FV + P + + V++ +GFLE+SN ++ EM +MI + Sbjct: 181 NIYNAVGSDAFVSIGRNLYIPQ-EGVNVFANNDVSILQGFLENSNVDAGKEMTEMIITQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + I ++ M + N+ Sbjct: 240 AFELSSRGIKTADE-MWGIVNNM 261 >gi|54307271|ref|YP_128291.1| FlgF flagellar basal-body rod protein [Photobacterium profundum SS9] gi|46911691|emb|CAG18489.1| Hypothetical FlgF flagellar basal-body rod protein [Photobacterium profundum SS9] Length = 244 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 15/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + A+N++N +T GFR + V A+K + + + VA Sbjct: 1 MDKMLFTAMSGASRVMMAQQVHANNLANVNTAGFRADIEQAESV--AVKGNGFETRTLVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T D A+ GD +FA+E+ TR G F + +G+L+ G Sbjct: 59 ARAGGTDFSHGALQHTDNPFDMAIRGDGFFAVEAGDNDEAYTRTGNFHLDAEGTLLL--G 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRE 173 PVL PI IP+ + ++G G IS + + + L D+ + E Sbjct: 117 DRPVLSTGG-PIVIPEYQQ-LDIGADGTISIVPLGSSLVQEVGQLKLVKPDL-ANLHKSE 173 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + E VTV G++E SN N++ M + L++ F ++ E Sbjct: 174 DGLFRVAGQGGQAEADENVTVASGYIETSNVNAVESMINNMSLSRNFEFQIKMMKTAED- 232 Query: 234 MLEAIRNI 241 + A + Sbjct: 233 LASAGNRL 240 >gi|253681880|ref|ZP_04862677.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] gi|253561592|gb|EES91044.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] Length = 263 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 27/265 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV----------GA 47 M ++ + E +++N++N+ TVG++ + KF +V+ Sbjct: 1 MIRGIYTAVSGLINQEAIQDVISNNLANSTTVGYKKDDLITRKFQDVMLHNYDKVVRGKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR----GIILTRD 103 ++NDI + + + G TG DFA++G+ +F + + TRD Sbjct: 61 VRNDIGELSMGSKIDETCTNYSQGVLEDTGKSTDFAIQGNGFFVVSRNDRVNNQNLYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVL----DMASVPIQIPQKDEIFNV--GEKGEISQKGKVIAT 157 G F + +G LV+ SG + + A PI I + + + GEI GK Sbjct: 121 GHFHIDRNGYLVNGSGDKVMGKNLTNGAISPINILVNNSPARMACNDMGEIYLNGKPAFK 180 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + + + + + + +++ S P ++ + V VK+ +LE SN N M E+ M+ Sbjct: 181 IQVVNFENYKSLRKIQDNLYSGTNP----KETNDVIVKQNYLEKSNVNVMAEVSDMMMTM 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 + F S ++ ++++ + + + Sbjct: 237 RNFESNQKVVQALDETLGKTVNEVG 261 >gi|21231396|ref|NP_637313.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768551|ref|YP_243313.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. campestris str. 8004] gi|21113062|gb|AAM41237.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573883|gb|AAY49293.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 251 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFQIRGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLM 174 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + G TV G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEA 237 + + A Sbjct: 235 NGDDNAQSA 243 >gi|54294164|ref|YP_126579.1| flagellar basal body rod protein FlgF [Legionella pneumophila str. Lens] gi|53753996|emb|CAH15467.1| flagellar biosynthesis protein FlgF [Legionella pneumophila str. Lens] Length = 248 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 115/250 (46%), Gaps = 17/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISF 58 M+ ++ + +R +A+N++N +T GF+ + + N +Q SF Sbjct: 1 MEPILYNSISGGRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G I+TG +LD A++GD W A++ +G TR G ++ +G L++A Sbjct: 61 ITQNANGVDTSPGEIITTGRDLDVAIDGDGWIAVQDSQGREAYTRGGSLRLNPNGQLITA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGF 169 SGK VL PI IP + +G G IS ++ + L ++D + Sbjct: 121 SGK-VVLGDGG-PISIPP-AQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNN-- 175 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + + G+ + + S + ++ G LE SN N++ +M MI ++F++ L+ Sbjct: 176 IYKNDEGLIQLKSGAAIAN-SNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLST 234 Query: 230 NEKSMLEAIR 239 + + + + Sbjct: 235 VDDNGQKLAQ 244 >gi|15895408|ref|NP_348757.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum ATCC 824] gi|15025131|gb|AAK80097.1|AE007715_2 Flagellar basal body rod protein [Clostridium acetobutylicum ATCC 824] gi|325509554|gb|ADZ21190.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum EA 2018] Length = 256 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 110/256 (42%), Gaps = 17/256 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M G++ A +++L ++++N++N+ T G+++ V FS+++ N + Sbjct: 1 MLRIMWNGVSGMAAEQEKLDSISNNLANSSTTGYKSETVGFSDLLYETLNRKGYPVTNDD 60 Query: 57 ------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 S V + + + GS + ++ A++G +F + +P G R G F V Sbjct: 61 NNRYTGSGVKANEWIRNNAQGSLTPSDSKTALAIDGSGYFKVTTPDGTEAYERAGSFTVN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKV---IATMGLYSVDM 165 +G +V +G Y +D + P + V + G IS Q G+ + + +Y V Sbjct: 121 ANGRIVDPNGNYLNIDYSVDPSTVKFTASNVAVAQDGTISIQNGQTTTNVGKINIYDVTG 180 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + + S P + V + + +LE+SN + EM MI + + + Sbjct: 181 NDSMISVGKSLFVPKAGAQMFVNNKSV-IYQNYLENSNVDLGTEMTDMIVAQRAYQINSK 239 Query: 226 LIDENEKSMLEAIRNI 241 ++ + +M + N+ Sbjct: 240 SLETGD-NMWSIVNNM 254 >gi|218135322|ref|ZP_03464126.1| hypothetical protein BACPEC_03227 [Bacteroides pectinophilus ATCC 43243] gi|217990707|gb|EEC56718.1| hypothetical protein BACPEC_03227 [Bacteroides pectinophilus ATCC 43243] Length = 276 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 99/267 (37%), Gaps = 31/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S + A + + T+A+N++N +T G++T +F ++ + Sbjct: 5 MMRSLWTAASGMTAQQTNVDTIANNLANVNTTGYKTESAEFKTLLYQNLQTKTTTANGEN 64 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 V G S G F+ + FA+ GD +F + G TR+G F Sbjct: 65 KPVNAQVGLGTRNSSITSHYTQGQFLDSDNTFSFAINGDGFFGVMGDDGNTYYTRNGNFF 124 Query: 108 VTD--DG--SLVSASGKYPVLDMASVPIQIPQ-KDEIFNVGEKGEI-----SQKGKVIA- 156 ++ DG L ++ G VL+ PI + V G+ + I Sbjct: 125 ISPLQDGSMMLCTSDGN-AVLNSEGAPITFNNMEANKITVDADGQFMYPDDTGNPAAIGI 183 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS------GVTVKRGFLEDSNANSMYEM 210 GLY G + ++ + S +K+G+LE SN N EM Sbjct: 184 QFGLYQFTNPSGLDKTSGGLLAATDASGDALNESVDQVTKKSQLKQGYLEGSNVNVATEM 243 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEA 237 +I + + + I+ +++ + +A Sbjct: 244 VNLITAQRAYELNSKAINASDEMLQQA 270 >gi|84624089|ref|YP_451461.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898986|ref|YP_201213.2| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368029|dbj|BAE69187.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 251 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 174 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + G T+ G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFTVATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEA 237 + + A Sbjct: 235 NGDDNAQSA 243 >gi|167034942|ref|YP_001670173.1| flagellar basal body rod protein FlgF [Pseudomonas putida GB-1] gi|166861430|gb|ABY99837.1| flagellar basal-body rod protein FlgF [Pseudomonas putida GB-1] Length = 246 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 101/251 (40%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKLLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSM--PVFGDSFPARAFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG +LD A+ G + A+++P G R G + G L + +G Sbjct: 59 TERPATDFSEGPLVETGRDLDVAVTGKGFIAVQAPDGSEAYVRTGSLNIDALGVLRAGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PI IP + + VG G IS + + + L + D + Sbjct: 119 -MPVMGNGG-PIAIPPE-QKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTKG--LT 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G+ P + V V GFLE SN N++ EM ++ L+++F +++ Sbjct: 174 KGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNTAK 233 Query: 231 --EKSMLEAIR 239 +++M ++ Sbjct: 234 EGDEAMARVLQ 244 >gi|32266589|ref|NP_860621.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] gi|32262640|gb|AAP77687.1| flagellar distal rod protein FlgG [Helicobacter hepaticus ATCC 51449] Length = 277 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 106/276 (38%), Gaps = 36/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 MQ+ + + RL +++N++N +T GF+ V + + + +Q Sbjct: 1 MQSGYYNTTGGMVTQFNRLDLISNNLANLNTTGFKRDDVVIGDYLRLFETHKEQLPIEDH 60 Query: 57 -------------SFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTR 102 +EY + +GS T LDFAL+ +A+F +++P GI TR Sbjct: 61 TRKAAKFLNRTMDRVPIISEEYTDRSIGSLAQTDNTLDFALQHQNAFFVVKTPDGIRYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFN----------VGEKGEIS 149 DG F + DG +VS G + I +P + + + Sbjct: 121 DGNFHIDADGHIVSKEGHLVLSRDGLEEGEGISVPTGMHLESDNSGNLYLRNINNDAIAE 180 Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--SGVTVKRGFLEDSNANSM 207 Q I + + + + + + D+ + + +GFLE SN N++ Sbjct: 181 QIN--IGALAVVGFENPRYLKKVGKNFYEYPEERLEERDILQNNGIIAQGFLEKSNVNAV 238 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIA 242 EM +I + + + ++ + + EAI +A Sbjct: 239 QEMTSLIETNRLVDMYSKVMKSHMDELNAEAITKLA 274 >gi|311694362|gb|ADP97235.1| flagellar basal-body rod FlgF [marine bacterium HP15] Length = 250 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 103/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + IG++ A+N++N T GF+ + + + + ++ Sbjct: 1 MDKALYIGMSGAKQNMLAQQAHANNLANVSTTGFKKDFAQARSM--PVYGEHHPTRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ + TG +LD A+EG+ W A+++ +G + TR G +V +G + A+G Sbjct: 59 TERPGTDLSAGALMETGRKLDVAVEGEGWLAIQNDQGEEVFTRSGSLQVDVNGLVRLANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRE 173 + VL P+ +P D +G G +S +++ L V + + Sbjct: 119 EL-VLGNGG-PVALPPFD-NVEIGADGTVSIVPVGGPPDQLVEVDRLKLVSPPPEALEKG 175 Query: 174 NSGISPNIPPT----PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 G P P + V GFLE SN N++ EM + L++++ ++ Sbjct: 176 LDGHMRRKPDQALDGPEPPDANQRVASGFLESSNVNAVEEMISNLQLSRQYEMQVKVMTT 235 Query: 230 NEKSMLEAIR 239 ++ R Sbjct: 236 ANENSEATAR 245 >gi|295707199|ref|YP_003600274.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium DSM 319] gi|294804858|gb|ADF41924.1| flagellar hook-basal body complex protein FlhO [Bacillus megaterium DSM 319] Length = 274 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 115/275 (41%), Gaps = 37/275 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV------------ 45 M F A L+ +++ + +N++N +T GF+ + F +++ Sbjct: 1 MFKGFYTAAAGMLSQQRQTDLLTNNIANANTPGFKADQGTLKAFPDMLLQRMESEDLPTD 60 Query: 46 ----GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL--------EGDAWFALE 93 K +I + V + S G T + AL EG +F ++ Sbjct: 61 RSISVQNKKEIGAINTGVYMQETVPSFTQGDLQQTSQSTNIALMEQNMPTKEGGLFFVVQ 120 Query: 94 SPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 SP TR+ F + +G L +++G Y VL+ + PIQ+ K E F V +G +++ Sbjct: 121 SPDNTPQYTRNSNFTLDQEGFLTTSTGAY-VLNTNNQPIQL--KSENFTVDSQGNVTENN 177 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSM 207 + +A + + Q +++ +G+ + PL +K+GF+E SN ++ Sbjct: 178 QQVAQIDIAYASDLQT-IKKVGNGLYETLNNQPLPSARNNPGISYQLKQGFVERSNVDAA 236 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + ++ ++SM +A I Sbjct: 237 QSMTDLLTAYRAFEANQKIMQAYDRSMDKAANEIG 271 >gi|57167708|ref|ZP_00366848.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|305433214|ref|ZP_07402370.1| flagellar basal-body rod protein [Campylobacter coli JV20] gi|57020830|gb|EAL57494.1| flagellar basal-body rod protein (flgG) [Campylobacter coli RM2228] gi|304443915|gb|EFM36572.1| flagellar basal-body rod protein [Campylobacter coli JV20] Length = 270 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 108/268 (40%), Gaps = 25/268 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRG-IILT 101 + Y +GS +T LD A+ DA++ +++ G I L+ Sbjct: 61 TRDASRFVNTTIDGVPQVSQGYTDFSLGSLKTTNNPLDLAITREDAFYLVQTKDGEIRLS 120 Query: 102 RDGRFKVTDDGSLVSASGKYPV-----LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 +DG F++ ++G LV+ G + + + I++P NV + G I G A Sbjct: 121 KDGNFQLNEEGYLVNKQGYRILSSDYFNNPQNAGIRLPNGAVYINVDKNGSIEVDGVQNA 180 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + + VD + + ++ + + + V++GF + SN N + EM +I Sbjct: 181 RLFIAQVDDIRALQKDGDNVYRIDDLTRIRDLDNSNAVRQGFSQGSNVNPVTEMVGLIEA 240 Query: 217 TQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 241 NRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|109899401|ref|YP_662656.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas atlantica T6c] gi|109701682|gb|ABG41602.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas atlantica T6c] Length = 247 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + + A+N++NT T GFR +++ + + A + ++ F Sbjct: 1 MDKLLYIAASGAKQDLLGTAVRANNLANTQTTGFRA-QLEQARSMPAFGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + E G+ I T ELD A++G+ W ++ G +R+G +++ DG L +SG Sbjct: 59 TENPANNFEGGAMIQTERELDVAIQGEGWLSVLDANGAEAYSRNGSLQISADGQLQDSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +L P+ +P N+ G IS + + + + L + + + Sbjct: 119 N-SILGEFG-PVFLPIPLSNINIAGDGTISVRPQGAPETVLEEVGRLKLVNPALDN--ID 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R N G+ + V+++ G LE SN N + EM MI L + + + E Sbjct: 175 RGNDGLFRQKDGELAQFDPTVSIRNGMLEGSNVNPVEEMVDMISLQRHYEMQIKFMKEAS 234 Query: 232 KSMLEAIRNI 241 + + Sbjct: 235 D-LDSRANQL 243 >gi|283953937|ref|ZP_06371466.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] gi|283794542|gb|EFC33282.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 414] Length = 270 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMA------SVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSNYFNNPQNAGIRIPNGAIQISVDKNGGIEVDGVQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|218460753|ref|ZP_03500844.1| flagellar basal body rod protein FlgG [Rhizobium etli Kim 5] Length = 244 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 33/241 (13%) Query: 20 STVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQKIS--------FVASGKEY 65 +A+N++N +T G + + +F++++ + N +Q + V + Sbjct: 1 EVIANNIANINTTGSKRARAEFTDLLYQTERAKGVANRANQAVVPEGANIGLGVQTSAVR 60 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL 124 G TG +LD AL G +F ++S G + TR G F D G LV+ G Y VL Sbjct: 61 NLHLQGELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTIDG-YEVL 119 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF------VRR 172 I IPQ + GE+S V+ + L G + + Sbjct: 120 PG----ITIPQGSTELTISRSGEVSVKLPGATDATVLGQLTLADFVNEAGLQPIGDNLFQ 175 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 E + + P E+ G +K+G+LE SN + + E+ ++I + + + +I ++ Sbjct: 176 ETAASGEAVVGNPDEEGFGY-MKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADE 234 Query: 233 S 233 Sbjct: 235 M 235 >gi|224370761|ref|YP_002604925.1| FlgF [Desulfobacterium autotrophicum HRM2] gi|223693478|gb|ACN16761.1| FlgF [Desulfobacterium autotrophicum HRM2] Length = 226 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 92/232 (39%), Gaps = 19/232 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 L E++L +++++N DT GF+ V F + A N Sbjct: 11 GGLRQERKLEVTSNHLANVDTAGFKKDVVSFDSMFKAALN---------------TDLTQ 55 Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 TG LD AL + +F +E+P G+ TR+G F + D LV +G VL P Sbjct: 56 AGVKHTGNPLDLALSDEGFFKVETPSGVRYTRNGVFSLNADNVLVDQNGD-AVLGQNG-P 113 Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 I I + GEI G VI + + + D + + + Sbjct: 114 ITI--TAGTVEINGTGEIRGDGAVIDQLDIVTFDTLDLLQKEGANNFVFTGDTNLEVAPA 171 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V V +G LE S+ ++ EM MI + + + ++ ++ +AI ++ Sbjct: 172 NVGVVQGSLELSSVKAVEEMVNMIDHHRMYETFQKMMMTFDEVDDKAINSLG 223 >gi|188582486|ref|YP_001925931.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] gi|179345984|gb|ACB81396.1| flagellar basal-body rod protein FlgG [Methylobacterium populi BJ001] Length = 263 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 92/263 (34%), Gaps = 33/263 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI----- 56 + A E + +++N++N T G++ +V F +++ Sbjct: 1 MRALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQDLLYQNLRRSGSSTSDQNT 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V + + G T + D A+ G+ F + P G TRDG F Sbjct: 61 ILPAGLALGSGVKTTSTARAMSQGPLAQTDKDYDVAIRGEGLFRVRLPDGRNAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G LV+ G +LD + +P + G + + + L Sbjct: 121 DLDAQGQLVTRDGY--LLDPG---VTVPNTATSVTISATGAVQATLPGQTAPQALGQFQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ P I P + G +++ +LE++N N++ E+ +I Sbjct: 176 ARFVNKVGLESIGDNLFVETAASGPAITGLPGSEGFG-NLQQNWLEEANVNAVTEISSLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + ++ ++ + Sbjct: 235 AAQRAYEMNSKVVTAADQMLSTT 257 >gi|254470407|ref|ZP_05083811.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] gi|211960718|gb|EEA95914.1| flagellar basal-body rod protein FlgG [Pseudovibrio sp. JE062] Length = 260 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 95/264 (35%), Gaps = 32/264 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + +I A E + +++N++N T G++ + F +++ + + Sbjct: 1 MKALHIAATGMKAQELNVEVISNNVANMRTTGYKRQRADFQDLLYENQRRMGTETSDAGT 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q S V + GS TG E D + G+ +F ++ P G I TRDG F Sbjct: 61 IVPNGVQIGSGVRTAATTRIMSPGSVTQTGNEYDVTIRGEGFFQIQRPDGTIGYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKV--IATMGLY 161 + G LV+ G YPV I IP + +G + +V + + Sbjct: 121 ARSQTGQLVTKDG-YPVQPG----ITIPDNARDVTINVQGLVQAMDDNDQVLNLGQLETA 175 Query: 162 SVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 G ++ P P G + + LE SN +++ E+ +I Sbjct: 176 RFTNQAGLEAIGDNLFLETPASGPPQLNNPGTAGFG-NILQRHLESSNVDAVTELSSLIS 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + +I ++ Sbjct: 235 AQRAYEMNSKIIKAADEMYSTTTN 258 >gi|170758330|ref|YP_001787958.1| flagellar basal body rod protein FlgG [Clostridium botulinum A3 str. Loch Maree] gi|169405319|gb|ACA53730.1| flagellar basal body rod protein [Clostridium botulinum A3 str. Loch Maree] Length = 263 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 114/263 (43%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M + + +A + +L ++++N++N +TVG++ V F E+V + Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRQ 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 +I A+ + + G ++TG + D A++G +F + G R G F + Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMSDGNYAYERSGNFVID 120 Query: 110 DDGSLVSASGK-YPVLDMASVPIQIPQKDE-----IFNVGEKGEISQK-----GKVIATM 158 +G LV +G + + +QI + N+ E G IS K K++ + Sbjct: 121 RNGMLVDENGNRLEIQFQGTEGMQILNRIGGFSRNNINIAEDGSISVKDIDGINKMVGKI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +Y+ S FV + P + + V++ +GFLE+SN ++ EM +MI + Sbjct: 181 NIYNAVGSDAFVSIGRNLYIPQ-EGVNVFANNDVSILQGFLENSNVDAGKEMTEMIITQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + I ++ M + N+ Sbjct: 240 AFELSSRGIKTADE-MWGIVNNM 261 >gi|322378390|ref|ZP_08052845.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS1] gi|322380258|ref|ZP_08054478.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS5] gi|321147295|gb|EFX41975.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS5] gi|321149203|gb|EFX43648.1| flagellar basal-body rod protein (flgG) [Helicobacter suis HS1] Length = 286 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------D 51 M + + ++ +L +++N++N +T GF+ V + + +N Sbjct: 16 MTSGYYAATGGMVSEFNKLDQISNNLANLNTPGFKRDDVVVGDFLRLYQNYRDKLPLHDQ 75 Query: 52 IDQKISFVA--------SGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTR 102 Q ++ + Y +G T ELDFAL + +A+FA+++P+G+ TR Sbjct: 76 TKQAAKYLNRNLNRVPIITERYTDYSLGPMQKTDNELDFALSDSNAYFAVQTPQGVAFTR 135 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVP----IQIPQKDEIFNVGEKGEIS--QKGKVI- 155 DG F + G L + G Y VL + IQ+ +V G I Q + + Sbjct: 136 DGSFTIDSQGFLSTKEG-YHVLSRGGIENQAGIQMLPG-SSVSVNPNGAIFFRQGDEEVP 193 Query: 156 -ATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 + + + + + N+ P +L+ V++ FLE SN N++ EM ++ Sbjct: 194 GGNLAIVGFESQKLLKKIGNNLYTYPQEKMAERVELNAPIVRQHFLEKSNVNAVLEMTRL 253 Query: 214 IHLTQKFNSITTLIDENEKSM-LEAIRNIA 242 I + + + ++ + M EAI +A Sbjct: 254 IEANRLVDMYSKVLKTHMDDMHTEAINKLA 283 >gi|26991075|ref|NP_746500.1| flagellar basal body rod protein FlgF [Pseudomonas putida KT2440] gi|24986109|gb|AAN69964.1|AE016634_13 flagellar basal-body rod protein FlgF [Pseudomonas putida KT2440] Length = 246 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 23/253 (9%) Query: 1 MQTSFNIGLAA--QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 M + + Q AL Q+ A+N++N T GF+ + + + D +F Sbjct: 1 MDKLLYVAMTGASQNALAQK--AHANNLANISTNGFQRDLEQARSM--PVFGDSFPARAF 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G + TG +LD A+ G + A+++P G R G + G L + Sbjct: 57 AMTERPATDFSEGPLVETGRDLDVAVTGKGFIAVQAPDGSEAYVRTGSLNIDALGVLRAG 116 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGF 169 +G PV+ PI IP + + VG G IS + + + L + D Sbjct: 117 NG-MPVIGNGG-PIAIPPE-QKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTKG-- 171 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + G+ P + V V GFLE SN N++ EM ++ L+++F +++ Sbjct: 172 LTKGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNT 231 Query: 230 N---EKSMLEAIR 239 +++M ++ Sbjct: 232 AKEGDEAMARVLQ 244 >gi|322806967|emb|CBZ04537.1| flagellar basal-body rod protein FlgG [Clostridium botulinum H04402 065] Length = 263 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 111/263 (42%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M + + +A + +L ++++N++N +TVG++ V F E+V + Sbjct: 1 MLRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRP 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 +I A+ + + G ++TG + D A++G +F + G R G F V Sbjct: 61 EIQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMADGNYAYERSGNFVVD 120 Query: 110 DDGSLVSASGKY---PVLDMASVPIQIPQKD---EIFNVGEKGEISQK-----GKVIATM 158 +G LV +G + A I N+ E G IS K K++ + Sbjct: 121 RNGMLVDENGNRLEIQLQQPAGGQILNRIGGFSKNNINIAEDGSISVKDIDGINKMVGKI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +Y+ S FV + P + + V++ +GFLE+SN ++ EM +MI + Sbjct: 181 NIYNAVGSDAFVSIGRNLYIPQEGVNVFTN-NDVSILQGFLENSNVDAGKEMTEMIITQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + I ++ M + N+ Sbjct: 240 AFELSSRGIKTADE-MWGIVNNM 261 >gi|188991640|ref|YP_001903650.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. campestris str. B100] gi|167733400|emb|CAP51601.1| Flagellar basal-body rod protein flgF [Xanthomonas campestris pv. campestris] Length = 251 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 14/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFQIRGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT------MGLYSVDMSQGFVRRE 173 + VLD P+ IP + +G G IS + + VD + R Sbjct: 119 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPPTMAIVGKMKVVDAPADRLTRR 176 Query: 174 NSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 G+ N P + + G TV G LE SN ++ + +MI L ++F +I Sbjct: 177 PDGLMRNTSTDPAQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNG 236 Query: 231 EKSMLEA 237 + + A Sbjct: 237 DDNAQSA 243 >gi|163782129|ref|ZP_02177128.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] gi|159882661|gb|EDP76166.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] Length = 242 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 117/240 (48%), Gaps = 20/240 (8%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVK----FSEVVGAIKN----DIDQKISFVAS 61 + L E++L+ +N++N DT F+ V+ ++++ + N + + Sbjct: 13 SGMLLQERKLAVTTNNLANLDTPSFKRDFVEVSSWYTDMGAQVPNLSPENPTNNFVYPMM 72 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + + GS TG D A+EG+ +FA+ +P G++ TR G F++ +G LV+ G Y Sbjct: 73 TRIFTDLSQGSLRETGNTFDLAIEGEGFFAVRTPEGVMYTRKGNFRLDSEGFLVTEKG-Y 131 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 VLD A+ +++ +V +G + G ++T+G++++ +Q + Sbjct: 132 RVLDRANDEVKVVGN--RVDVDREGNVYVDGIRVSTLGVWALPDAQ---KVGEDLF--TG 184 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P P E G +V++GF+E SN N + EM ++I ++ + LI ++ + + I Sbjct: 185 TPQPAE---GFSVRQGFIELSNVNGIVEMVRLIETSRAHETYARLIQAVDE-VQNRVNTI 240 >gi|153952418|ref|YP_001398358.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939864|gb|ABS44605.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. doylei 269.97] Length = 270 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 108/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENR 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ D ++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDTFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRYLENSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|330502735|ref|YP_004379604.1| flagellar basal body rod protein FlgF [Pseudomonas mendocina NK-01] gi|328917021|gb|AEB57852.1| flagellar basal body rod protein FlgF [Pseudomonas mendocina NK-01] Length = 246 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 16/242 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L A+N++N T GFR + + + + F Sbjct: 1 MDKMLYVSMTGAQNNTMGLRAHANNLANVSTSGFRRDFEQARSM--PLFGESYPARVFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS TG +LD A+ G W A+++P G R + G L + +G Sbjct: 59 SERPATDFRPGSLQETGRDLDVAVGGKGWIAVQAPDGSEAYVRTASLNIDALGMLRTGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ A PI +P + + +G+ G IS + + + L + D + Sbjct: 119 -LPVMGNAG-PIAVPPE-QKVEIGQDGTISIRALGENPNVLAEVDRIKLVNPDPKS--ME 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ +E + V V GFLE SN N++ EM ++ L+++F ++ E Sbjct: 174 KGTDGLIRVKGQPEVEADATVQVTSGFLEASNVNAVEEMTAILSLSRQFELSVKMMRTAE 233 Query: 232 KS 233 + Sbjct: 234 DN 235 >gi|150020363|ref|YP_001305717.1| hypothetical protein Tmel_0465 [Thermosipho melanesiensis BI429] gi|149792884|gb|ABR30332.1| protein of unknown function DUF1078 domain protein [Thermosipho melanesiensis BI429] Length = 233 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 40/257 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + LA +L T+++N+SN DT G+++ + F + Sbjct: 1 MYRGIYLASMGMLADITKLDTLSNNISNVDTAGYKSDSLAFKAYFEKQLYSFNPMPQKEE 60 Query: 58 -----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + G+ TG LDFA++G +F +E+ + TR G F Sbjct: 61 VEVKKIGSFEQALILDQVKTNYSQGTLEYTGHSLDFAIDGKGFFVVENAGKRMYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 K ++G L++ G Y VL I++ G V+ + + ++ Sbjct: 121 KANEEGYLITPEGYY-VLGKNDQKIKL-----------------DGNVLEKLLVVALKNP 162 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + G + +G++E SN N + EM +MI T+ + +++ Sbjct: 163 RKVGYTFFKGEEVRKE--------NFRILQGYVEKSNVNIVREMVKMIEATRHYETLSKA 214 Query: 227 IDENEKSMLEAIRNIAS 243 + +++ + ++I + S Sbjct: 215 VTVHDELLNKSINSAGS 231 >gi|296103610|ref|YP_003613756.1| Flagellar basal-body rod protein FlgF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058069|gb|ADF62807.1| Flagellar basal-body rod protein FlgF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 245 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 105/246 (42%), Gaps = 17/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++A A R + ++N++N+ T GFR F V I+ + + + VA Sbjct: 1 MDRAIYTAMSAANAALNRQAVTSNNLANSSTAGFRAQLAAFRSV--PIEGETLRTRALVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + +G TG LD AL D W A+ G TR+G +V DG L S +G Sbjct: 59 ESTPFHDTTMGPITHTGRSLDVALPQDGWLAVALDDGSEGYTRNGAIEVDQDGVL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + P++ P+++P + +G G +S G + + L + DM+ + Sbjct: 118 R-PLMGDGG-PLEVPPQSH-VTIGSDGTVSALGMGDDPTMLVPVGRLKLVNADMNS--LV 172 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ L + + +E SN + + M QMI ++ F+ +I + Sbjct: 173 HGDDGLFRTAGGEMLAQDETLRLTPEAIEGSNVSPVQAMTQMIANSRGFDMNMKVIRTAD 232 Query: 232 KSMLEA 237 ++ +A Sbjct: 233 ENAQKA 238 >gi|78047585|ref|YP_363760.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036015|emb|CAJ23706.1| flagella basal body rod protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 251 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 174 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + TV G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFAVATSKTVNSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEA 237 + + A Sbjct: 235 NGDDNAQSA 243 >gi|307609978|emb|CBW99507.1| flagellar biosynthesis protein FlgF [Legionella pneumophila 130b] Length = 248 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 114/250 (45%), Gaps = 17/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISF 58 M+ ++ + +R +A+N++N +T GF+ + + N +Q SF Sbjct: 1 MEPILYNSISGSRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G I+TG +LD A++GD W A++ +G TR G ++ +G L++A Sbjct: 61 ITQNANGIDTSPGEIITTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNPNGQLITA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGF 169 SGK VL PI IP + +G G IS ++ + L ++D + Sbjct: 121 SGK-VVLGDGG-PISIPP-AQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDKNN-- 175 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + + G+ + S + ++ G LE SN N++ +M MI ++F++ L+ Sbjct: 176 IYKNDEGLIQLKSGAATAN-SNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLST 234 Query: 230 NEKSMLEAIR 239 + + + + Sbjct: 235 VDDNGQKLAQ 244 >gi|195953934|ref|YP_002122224.1| flagellar basal body rod protein [Hydrogenobaculum sp. Y04AAS1] gi|195933546|gb|ACG58246.1| flagellar basal body rod protein [Hydrogenobaculum sp. Y04AAS1] Length = 253 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 102/254 (40%), Gaps = 24/254 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKI 56 + + ++RL VA+N++N DT GF+ + G ++ Sbjct: 8 MYVLASGMSLEQRRLDVVANNIANADTPGFKKDFLSALAYYTPDATKEPGNAPDNPSNNY 67 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 + K Y + G T LD A+ G +F + + +G I R G F++ +G LV Sbjct: 68 VYPIMEKIYTNYTEGPIKKTDNPLDLAINGKGFFKVMNDKGEIFYQRRGDFQLDKNGYLV 127 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-------VIATMGLYSVDMSQG 168 + G VL + PIQIP ++ +G + + + T+GL + Sbjct: 128 NHYG-MKVLGPKNQPIQIPPIATSIHISPQGNVFITTQGTNETPSQVGTIGLVDLTNP-- 184 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + + + TP + T+ +G LE SN N + EM Q+I L++ + L+ Sbjct: 185 --EKAGNDLYTAQNATP---DTTSTLIQGALEGSNVNPVREMVQLIDLSKAYQVYGNLVK 239 Query: 229 ENEKSMLEAIRNIA 242 E + + N Sbjct: 240 GLETTQSKVSNNFG 253 >gi|83955137|ref|ZP_00963793.1| Flagellar basal body rod protein [Sulfitobacter sp. NAS-14.1] gi|83840466|gb|EAP79639.1| Flagellar basal body rod protein [Sulfitobacter sp. NAS-14.1] Length = 259 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 7/245 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ L + + T A N++N T G++ I + D I++V Sbjct: 17 MTNISYVALSQATVLTRNMDTTAHNLANATTSGYKAIHPVLESIPDGSG---DNAINYVR 73 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 YL G + TG +D A+ GD W + + P G +R GR V DG L +A G Sbjct: 74 ESGTYLELTDGPLMQTGNPMDIAVAGDGWLSFQLPGGETGYSRHGRLVVDVDGQLKTA-G 132 Query: 120 KYPVLDMASVPIQIPQKDEI-FNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRENSGI 177 P+L + P+ +P + G ++ +G V+ + + +++ + + Sbjct: 133 GMPLLGVGGGPVVLPDDVGDEVVITTSGTVTNPQGAVLGAVSVVAINEAAQMLPMGAGMY 192 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + + VK+GF+E SN N++ EM ++I + + + + L+ ++ A Sbjct: 193 QLPPNAGQPQQMENPQVKQGFIEGSNVNAVLEMTRLIDIQRAYENSVKLMGSDDDLTRTA 252 Query: 238 IRNIA 242 I+ + Sbjct: 253 IQKLG 257 >gi|331666548|ref|ZP_08367422.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] gi|331065772|gb|EGI37656.1| flagellar basal-body rod protein FlgG [Escherichia coli TA271] Length = 261 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 96/267 (35%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + I A + +S +A+N++N +T GF+ +V F ++ + Sbjct: 1 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G + ++ G I TRDG Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG L + G I +P GE G ++ + + L Sbjct: 121 QVNADGVLTISQGL-----PLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ LE SN + + EM MI Sbjct: 176 VNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLG-TLQDNALEGSNVDIVNEMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLQYISQTL 261 >gi|21242726|ref|NP_642308.1| flagellar basal body rod protein FlgF [Xanthomonas axonopodis pv. citri str. 306] gi|21108202|gb|AAM36844.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 251 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q TV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQGTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 174 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + G T+ G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEA 237 + + A Sbjct: 235 NGDDNAQSA 243 >gi|54297183|ref|YP_123552.1| flagellar basal body rod protein FlgF [Legionella pneumophila str. Paris] gi|53750968|emb|CAH12379.1| flagellar biosynthesis protein FlgF [Legionella pneumophila str. Paris] Length = 248 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 114/250 (45%), Gaps = 17/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--SF 58 M+ ++ + +R +A+N++N +T GF+ + + N +Q SF Sbjct: 1 MEPILYKAVSGGRSDFKRQEMIANNLANINTPGFKADLYQAQTMYMNNANGNNQFNMHSF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G I+TG +LD A++GD W A++ +G TR G ++ +G L++A Sbjct: 61 ITQNTNGVDTSPGEIITTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNANGQLITA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGF 169 SGK VL PI IP + +G G IS ++ + L ++D + Sbjct: 121 SGK-VVLGDGG-PISIPP-AQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNN-- 175 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + + G+ + S + ++ G LE SN N++ +M MI ++F++ L+ Sbjct: 176 IYKNDEGLIQLRSGAATTN-SNIKLQSGALEGSNVNAIDQMVAMISAGREFDAQMKLLST 234 Query: 230 NEKSMLEAIR 239 + + + + Sbjct: 235 VDDNGQKLAQ 244 >gi|38570329|gb|AAR24612.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni] Length = 270 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 110/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNSAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAIRKGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|308273543|emb|CBX30145.1| hypothetical protein N47_D29540 [uncultured Desulfobacterium sp.] Length = 226 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 18/240 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +S + L + R T+++N++N +T F+ V F + ++ Sbjct: 1 MISSNYSLVEGSLIQQLRFDTLSNNLANVNTNAFKQDIVSFDQ--------------NLS 46 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G + TG D ALEG +F +++ GI +RDG F + DG LV+ +G Sbjct: 47 LNRSSIDLSSGPIVFTGNAFDVALEGPGFFKIQTASGIKYSRDGAFSLNRDGMLVNRNGD 106 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 VL PI + + +G G+I++ G + + + S+ + + + Sbjct: 107 -KVLGKNG-PITLTGNN--IVIGSDGQITEDGNPGDKIFVADIKDSKLLKKEGMNYYVYD 162 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + V++K+ ++E SN N EM +M+ + F SI + +++ + + + Sbjct: 163 GEAKNITSAEKVSIKQSYIEKSNVNVTEEMIRMVETLRTFESIQKALQNTDETTGKMVND 222 >gi|325918878|ref|ZP_08180955.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas vesicatoria ATCC 35937] gi|325534915|gb|EGD06834.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas vesicatoria ATCC 35937] Length = 251 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 14/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM------GLYSVDMSQGFVRRE 173 + VLD P+ IP + +G G IS + + VD + R Sbjct: 119 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQAMDIVGKMKVVDAPADRLTRR 176 Query: 174 NSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 G+ N P + + G TV G LE SN ++ + +MI L ++F +I Sbjct: 177 PDGLMRNTSTDPAQAFAVATGKTVNGGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNG 236 Query: 231 EKSMLEA 237 + + A Sbjct: 237 DDNAQSA 243 >gi|120554034|ref|YP_958385.1| flagellar basal body rod protein FlgF [Marinobacter aquaeolei VT8] gi|120323883|gb|ABM18198.1| flagellar basal-body rod protein FlgF [Marinobacter aquaeolei VT8] Length = 250 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + IG++ A+N++N +T GF+ + + + + ++ Sbjct: 1 MDKALYIGMSGAKQNMLAQRAHANNLANVNTTGFKKDFAQARSM--PVFGEHHPTRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ + TG +LD A++G W A+++ G + TR G +V +G + ASG Sbjct: 59 TERPGTDLSPGALMETGRKLDVAVDGGGWLAVQNNLGEEVFTRTGSLQVDVNGLVRLASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRE 173 + VL P+ +P D VG G IS +++ L V+ + + Sbjct: 119 EL-VLGNGG-PVALPPFD-NLQVGSDGTISIVPVGGPPDQLVEVDRLKLVNPPADALEKG 175 Query: 174 NSGISPNIPPT----PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 G P P + + V GFLE SN N++ EM + L++++ ++ Sbjct: 176 LDGFIRRKPDQALDGPEPPDAAMRVATGFLESSNVNAVEEMISNLQLSRQYEMQVKVMTT 235 Query: 230 NEKSMLEAIR 239 ++ R Sbjct: 236 ANENSEATAR 245 >gi|259907635|ref|YP_002647991.1| Flagellar basal-body rod protein FlgF [Erwinia pyrifoliae Ep1/96] gi|224963257|emb|CAX54741.1| Flagellar basal-body rod protein FlgF [Erwinia pyrifoliae Ep1/96] gi|283477477|emb|CAY73393.1| Flagellar basal-body rod protein flgF [Erwinia pyrifoliae DSM 12163] Length = 245 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 17/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++A A R + ++NM+N T GFR F V ++ + + V Sbjct: 1 MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAV--PVEGETIATRALVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 Y +G TG LD AL + W A+ P G TR+G +V DG+L S +G Sbjct: 59 DSTPYHDGSMGPLNHTGRSLDVALPQNGWLAVAMPDGTEGYTRNGAIEVDRDGAL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 YP++ P+ +P + + G ++ G + + + + + Sbjct: 118 -YPLMGD-GAPLTVPPQ-SAVTIAPDGTLTALGAGDDPTTVTPVGRLKMANASIQDLL-- 172 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ L +G+ + LE SN + + M +MI + F+ I + Sbjct: 173 HGDEGLFHPKAGDSLPVDAGLRLSPETLEGSNVSPVKAMTEMIATARSFDMNMKTIRTAD 232 Query: 232 KSMLEA 237 ++ +A Sbjct: 233 ENAKQA 238 >gi|296135672|ref|YP_003642914.1| flagellar basal-body rod protein FlgF [Thiomonas intermedia K12] gi|295795794|gb|ADG30584.1| flagellar basal-body rod protein FlgF [Thiomonas intermedia K12] Length = 245 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 12/245 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + I A+ ++ + +N++N +T G+R + +F + + + ++ Sbjct: 1 MDTLWIAATGARAVLRQQAVTTNNLANVNTTGYRGEQAQFRAL--PVYGNALPTSAYTTV 58 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + + G TG LD A+ G W A+++P G TR+G +V+ G L ++ G+ Sbjct: 59 QGNSANLQEGPINHTGRNLDVAIRGSGWIAVQAPNGDTAYTRNGDLQVSASGILSTSDGR 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRREN 174 PVL + PI +P E +G G IS Q ++ + V+ ++R Sbjct: 119 -PVLGQSGAPISVPP-LESVQIGADGTISGVPVGSQPNALVVINRIQLVNPPPAQMQRGA 176 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + P V + G LE SN N + M Q++ T+ F T L+ +++ Sbjct: 177 DGLFRDTQG-PAPADGNVQLAVGALEGSNVNPVQAMIQILDNTRAFEMQTKLMQTVDQNH 235 Query: 235 LEAIR 239 A + Sbjct: 236 QAATQ 240 >gi|319787120|ref|YP_004146595.1| flagellar basal-body rod protein FlgF [Pseudoxanthomonas suwonensis 11-1] gi|317465632|gb|ADV27364.1| flagellar basal-body rod protein FlgF [Pseudoxanthomonas suwonensis 11-1] Length = 249 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 14/244 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I + A Q STV+ N++N DT GF+ +E +++ + Sbjct: 1 MDKALYIAMTGARASLQAQSTVSHNLANADTAGFKAALAN-TEAFPVRGAGYPSRVAALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ TG LD +L D W A+++P G TR G +T +G LV++ G Sbjct: 60 VDQGF-DASAGALRVTGNPLDVSLHADRWLAVQAPDGSEAYTRAGDLSLTPNGQLVTS-G 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + +L PI +P + +G+ G +S ++ + + Q R Sbjct: 118 GHALLGQDGNPIALPPH-QALEIGQDGTVSIVPLGEGADTMAMVGRLKVVDA-RPQQLTR 175 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + + P PL+ G + G LE+SN ++ + QMI L ++F +I + Sbjct: 176 GLDGLMRNTAPQQPLQQAPGTVMTTGALEESNVDAAGALVQMIQLQRQFEMQVKVIKTGD 235 Query: 232 KSML 235 ++ Sbjct: 236 ENAR 239 >gi|322382385|ref|ZP_08056292.1| FlgG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153738|gb|EFX46113.1| FlgG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 266 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 109/265 (41%), Gaps = 32/265 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------------KND 51 G++ + +L + +N++N +T+GF+ +V F +++ N Sbjct: 1 MYSGISGMRGFQTKLDVIGNNIANVNTIGFKGSRVMFQDLMSQTIRGATGPTDTQGGVNG 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKV 108 + + + L G+ +T + D +EGD +FA+++ LTR G FKV Sbjct: 61 QQIGLGSTVASIDTLHTNTGAM-NTYVKTDMRIEGDGYFAVKTSSESDTYYLTRAGNFKV 119 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSV 163 LV+A G VL+ PI+ + ++ G G I+Q + + I +G+ V Sbjct: 120 DAQRRLVTADGML-VLNSDGDPIEFSENMTDYSFGADGTITQILKGGEKETIGQIGVVKV 178 Query: 164 DMSQGFVRRENSGIS---------PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ + P I + T+ G LE SN + E +MI Sbjct: 179 TNPSGLMKVGGNLFELTPNAHDGDPGISTPKNAETGTGTLMTGSLEMSNVDLTSEFTEMI 238 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + F + + +I +++ + E + Sbjct: 239 VAQRGFQANSRIITTSDEVLQEVVN 263 >gi|121612923|ref|YP_001000393.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167005336|ref|ZP_02271094.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87249505|gb|EAQ72465.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 270 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 110/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ V F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIAGFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +G +T LD A+ DA++ +++ G LT Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGFLKATNNPLDLAMTREDAFYLVQTKDGEVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAT 268 >gi|187778772|ref|ZP_02995245.1| hypothetical protein CLOSPO_02367 [Clostridium sporogenes ATCC 15579] gi|187772397|gb|EDU36199.1| hypothetical protein CLOSPO_02367 [Clostridium sporogenes ATCC 15579] Length = 266 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 113/262 (43%), Gaps = 24/262 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KND 51 + + +A + +L ++++N++N +TVG++ V F E+V + + Sbjct: 5 LRALWNSKSGLIAQQNKLDSISNNLANVNTVGYKREDVSFQELVQETLKRKGYPTSDRPE 64 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 I A+ + + G ++TG + D A++G +F + P G R G F + Sbjct: 65 IQTGTGVKATNWIRDTHQQGILLNTGNKTDLAIDGQGFFRVIMPDGNYAYERSGNFVIDR 124 Query: 111 DGSLVSASGKY---PVLDMASVPI--QIPQ-KDEIFNVGEKGEISQK-----GKVIATMG 159 +G LV +G + A I +I N+ E G IS K K+I + Sbjct: 125 NGMLVDENGNRLEIQLQQPAGSQILNRIGGFNKNNINIAEDGSISAKDVDGINKMIGKIN 184 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 +Y+ S FV + P + + V++ +GFLE+SN ++ EM +MI + Sbjct: 185 IYNAVGSDAFVSIGRNLYIPQ-EGVNVFVNNDVSMLQGFLENSNVDAGKEMTEMIITQRA 243 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 F + I ++ M + N+ Sbjct: 244 FELSSRGIKTADE-MWGIVNNL 264 >gi|163789641|ref|ZP_02184079.1| flagellar hook protein [Carnobacterium sp. AT7] gi|159875173|gb|EDP69239.1| flagellar hook protein [Carnobacterium sp. AT7] Length = 289 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 117/287 (40%), Gaps = 49/287 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G+ ++ ++ +++N++N +T F+T +V+F +++ I+ Sbjct: 1 MLKSLYSGVTGMKNIQTKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQTGINAQQ 60 Query: 58 ---FVASGKEYLSKEVGSFISTGTELDFALE-GD-AWFALESPRGIILTRDGRFKVTDDG 112 V G GS STG LDF +E GD ++F ++ TRDG F +G Sbjct: 61 VGLGVQVGSIDTVMSGGSLQSTGRALDFGIENGDSSFFTVKEGDNTFYTRDGGFYTDPNG 120 Query: 113 SLVSASGKYPVLDMASVP--------------------IQIPQ---------KDEIFNVG 143 +LV++ G +A+ P I IPQ + ++V Sbjct: 121 NLVTSGGLKVQGFVANPPAVNDTNFNPDTFVDGKTMSAITIPQSIGEGADKADLQSYSVD 180 Query: 144 EKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNI------PPTPLEDLSGV 192 KG I GK V+ +GL S G + + + +P E G Sbjct: 181 SKGFIVGSYSGGKSMVLGRVGLTSFSNPDGLQKSGGNLYTETANSGAPEAGSPGEPGYG- 239 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V+ GFLE SN + E +MI ++ + + + I ++ + E I Sbjct: 240 SVRSGFLEMSNVDLANEFTEMIVTSRSYQANSRSITTSDTMLEELIN 286 >gi|294664592|ref|ZP_06729933.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605649|gb|EFF48959.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 249 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 19/253 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 174 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + G T+ G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEAIRNI 241 + + ++ ++ Sbjct: 235 NGDDN-GQSANSL 246 >gi|170742325|ref|YP_001770980.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] gi|168196599|gb|ACA18546.1| flagellar basal-body rod protein FlgG [Methylobacterium sp. 4-46] Length = 263 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 91/263 (34%), Gaps = 33/263 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI----- 56 + A E + +++N++N T G++ + F +++ Sbjct: 1 MRALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQAHFQDLLYQNLRRAGTATSDQGN 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V + G+ ST D A+ G+ F + P G TRDG F Sbjct: 61 QLPAGLALGSGVKTTSTARVMSQGTLSSTEKTYDVAIRGEGLFQITMPDGRTAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G +VS G + I +P + G + + + + L Sbjct: 121 DLDAQGQIVSRDGYLL-----NPAITVPNNATAVTISASGLVQATLPGQTAPQNLGQIQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ P I P + G ++++ +LE++N N++ E+ +I Sbjct: 176 ARFVNKVGLESIGDNLFIETQASGPAIQGNPGTEGFG-SLQQSYLEEANVNAVTEISSLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + ++ ++ + Sbjct: 235 AAQRAYEMNSKVVTAADQMLSTT 257 >gi|311033283|ref|ZP_07711373.1| flagellar basal-body rod protein [Bacillus sp. m3-13] Length = 273 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 102/273 (37%), Gaps = 34/273 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV------------ 45 M F A ++ ++R+ +++N+SN +T G++ + F +++ Sbjct: 1 MLRGFYTATAGMISQQRRMEMMSNNLSNANTPGYKADQGSLRSFPDMLLQRMEQASGTNT 60 Query: 46 ---GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------EGDAWFALESP 95 + ND + + V + G TG + D A+ +F +E Sbjct: 61 FSPMSNPNDPVRLSTGVYLQETKPKHTQGDLRPTGNDTDLAILNQNLPENASVYFTVEQV 120 Query: 96 RGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 G TR+G F + +G L + SG Y VLD IQI + V + G I + Sbjct: 121 DGTPRYTRNGNFSIDPEGYLTTNSGLY-VLDENDNRIQI--RSRSMFVQQDGTILEGDIR 177 Query: 155 IATMGLYSVDMSQGFVRRENSGIS-----PNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 +G+ + VR N P + ++ +G +E SN ++ Sbjct: 178 NTRLGIALANNPDELVREGNGLYRTAENVPLLQNAAGAPGVNYSISQGHIERSNVDTAQA 237 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M M + F + +I + SM +A I Sbjct: 238 MSDMTAAYRAFEANQKVIQAYDMSMQKAANEIG 270 >gi|124268253|ref|YP_001022257.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] gi|124261028|gb|ABM96022.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] Length = 242 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 10/244 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A QR T+A+N++N T GFR F V ++ D + Sbjct: 1 MDRMIYLSMSGAKATMQRQETLANNLANASTTGFRAELQAFRAV--PVRGDGASTRVYSL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G +TG LD A++G+AW A++ G TR G +V +G+L ++ G Sbjct: 59 ETTTGYDPTPGPMAATGRALDVAMQGNAWLAVQGLDGTEAYTRMGSLQVDAEGTLKTS-G 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVDMSQGFVRRENSGI 177 VL PI +P + G +S Q + ++G + + ++R + G+ Sbjct: 118 GLTVLGDGG-PIALPANSSP-QIAADGTVSVKQANGGVTSVGRLKLVTPEAALQRGDDGL 175 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 L V G LE SN N + M MI ++F S ++ E +A Sbjct: 176 FRAADGD-LPVDPNARVAEGTLEGSNVNPIENMVAMIAAARQFESQMKMLQTAEGD-EKA 233 Query: 238 IRNI 241 + Sbjct: 234 ASQL 237 >gi|310764859|gb|ADP09809.1| Flagellar basal-body rod protein FlgF [Erwinia sp. Ejp617] Length = 245 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 17/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++A A R + ++NM+N T GFR F V ++ + + V Sbjct: 1 MDRAIYTAMSAANAALNRQAVTSNNMANAATTGFRAQMAAFRAV--PVEGETIATRALVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 Y +G TG LD AL + W A+ P G TR+G +V DG+L S +G Sbjct: 59 DSTPYHDGSMGPLNHTGRSLDVALPQNGWLAVAMPDGTEGYTRNGAIEVDRDGAL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 YP++ P+ +P + + G ++ G + + + + + Sbjct: 118 -YPLMGD-GAPLTVPPQ-SAVTIAPDGTLTALGAGDDPTTVTPVGRLKMANASIQDLL-- 172 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ L +G+ + LE SN + + M +MI + F+ I + Sbjct: 173 HGDEGLFHPKTGDSLPVDAGLRLSPETLEGSNVSPVKAMTEMIATARSFDMNMKTIRTAD 232 Query: 232 KSMLEA 237 ++ +A Sbjct: 233 ENAKQA 238 >gi|114320058|ref|YP_741741.1| flagellar basal-body rod protein FlgF [Alkalilimnicola ehrlichii MLHE-1] gi|114226452|gb|ABI56251.1| flagellar basal-body rod protein FlgF [Alkalilimnicola ehrlichii MLHE-1] Length = 246 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 23/254 (9%) Query: 1 MQTSFNIGLAA----QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M + + A + N++N DT GFR + ++ Sbjct: 1 MDRLVYLAMTGAKHTLEAQQHN----NHNLANVDTPGFRADLDAL--MSAPVRGPGHDAR 54 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 ++ + G + TG LD A++GD W A+++P G TR G ++ D G L Sbjct: 55 AYSEALTVGSDFRQGGIVQTGRALDVAIDGDGWLAVQAPDGGEAYTRRGDLQIADGGLLT 114 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGF 169 + G + V+ A P+ IP DE +G G +S + + L VD + Sbjct: 115 TGDG-HLVMGEAG-PVAIPPADE-IEIGADGTLSIIPAGQNPDQWVELDRLKLVDPALQD 171 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI-- 227 +R++N G+ + E +GV + G E SN N + + +MI ++F + ++ Sbjct: 172 LRKDNDGLFRLVDGGEAEADAGVRLVSGAYEGSNVNMVDALVKMIDHARQFETYVKMMTA 231 Query: 228 -DENEKSMLEAIRN 240 +EN+++ + +RN Sbjct: 232 AEENDQTSAQLLRN 245 >gi|313497763|gb|ADR59129.1| Flagellar basal body rod protein FlgF [Pseudomonas putida BIRD-1] Length = 246 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 23/253 (9%) Query: 1 MQTSFNIGLAA--QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 M + + Q AL Q+ A+N++N T GF+ + + + D +F Sbjct: 1 MDKLLYVAMTGASQNALAQK--AHANNLANISTNGFQRDLEQARSM--PVFGDSFPARAF 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G + TG +LD A+ G + A+++P G R G + G L + Sbjct: 57 AMTERPATDFSEGPLVETGRDLDVAVTGKGFVAVQAPDGSEAYVRTGSLNIDALGVLRAG 116 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGF 169 +G PV+ PI IP + + VG G IS + + + L + D Sbjct: 117 NG-MPVIGNGG-PIAIPPE-QKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTKG-- 171 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + G+ P + V V GFLE SN N++ EM ++ L+++F +++ Sbjct: 172 LTKGLDGLIHTTSGQPADADVNVRVVAGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNT 231 Query: 230 N---EKSMLEAIR 239 +++M ++ Sbjct: 232 AKEGDEAMARVLQ 244 >gi|225849134|ref|YP_002729298.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium azorense Az-Fu1] gi|225644137|gb|ACN99187.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium azorense Az-Fu1] Length = 237 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 12/239 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV-KFSEVVGAIKNDIDQKISFVASGK 63 I + ++L T+ +N++N +T GF+ I + + S+ + + F Sbjct: 8 IYILASGGSRAVEQLDTITNNIANANTSGFKKILMREISQKIPENVGQTGDLLVFPRFRD 67 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + G+ I T LD A+EG+ +F +E+ G TR+G F + ++G LV +G Y + Sbjct: 68 TPVINNQGALIKTDNPLDVAIEGEGFFNVETNVGRFYTRNGHFSINNEGFLVDQNGGY-I 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD I++ ++ KGEI Q G+++AT+ + ++ ++ +G Sbjct: 127 LDTNRQRIKLDTNGR-VDITTKGEIYQNGRLVATLRVVNLQN----LQPVGNGYYNGQE- 180 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + T+++GFLE SN N + EM +MI+ ++F+ L ++ + + I Sbjct: 181 ---QATERYTLRQGFLEGSNVNIVKEMVEMINSHRRFDIYMNLAKSLDQ-LEGRLNEIG 235 >gi|315124199|ref|YP_004066203.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017921|gb|ADT66014.1| putative flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 270 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 109/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDID---- 53 MQ + + +L + +N++N +T G++ F + ++++ Sbjct: 1 MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADFKRIFKETQDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 +EY +GS +T LD A+ DA++ +++ G L Sbjct: 61 TRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMTREDAFYLVQTKDGEVRLA 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL + + I+IP +V + G I G Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSDYFNNPQNAGIRIPNGAVQISVDKNGSIEVDGAQN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + + +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAIRQGFSQGSNVNPVTEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +A+ Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQEAINKLAA 268 >gi|288554368|ref|YP_003426303.1| flagellar basal-body rod protein [Bacillus pseudofirmus OF4] gi|288545528|gb|ADC49411.1| flagellar basal-body rod protein [Bacillus pseudofirmus OF4] Length = 272 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 109/272 (40%), Gaps = 33/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV----------GA 47 M A +A +QR + +N++N +T G++ + F ++ GA Sbjct: 1 MLRGLYGAAAGMIAQQQRQEMLTNNLANANTPGYKADQASLRAFPNMLIKAMDTQGPKGA 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL------------EGDAWFALESP 95 I + + V + + G TG D AL G ++ ++S Sbjct: 61 SAPIIGELATGVYLQERMPNFRQGDINETGNSTDIALLQGVLPEGESGRPGALFYTIQSN 120 Query: 96 RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-SQKGKV 154 I+ +R+G F + G L + G+Y VL +Q+ DE F + G I S G V Sbjct: 121 DEILYSRNGNFTIDGAGFLTTTEGQY-VLGTNGESLQV--GDENFTLDPNGTITSSDGAV 177 Query: 155 IATMGLYSVDMSQGFVRRENSGISPN----IPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 I + + + V+ + + +P +++GF+E SN ++ M Sbjct: 178 IGQINVAYAEDPMLLVKEGDGLLRYTEEGELPTAIGNAEINYQLQQGFIERSNVDASQTM 237 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +M++ + F + ++ ++S+ +A+ + Sbjct: 238 TEMMNAYRSFEANQRILQAYDQSLDKAVNEVG 269 >gi|83747653|ref|ZP_00944689.1| FlgF [Ralstonia solanacearum UW551] gi|207728347|ref|YP_002256741.1| flagellar basal-body rod protein flgf [Ralstonia solanacearum MolK2] gi|207739736|ref|YP_002258129.1| flagellar basal-body rod protein flgf [Ralstonia solanacearum IPO1609] gi|300696914|ref|YP_003747575.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum CFBP2957] gi|83725705|gb|EAP72847.1| FlgF [Ralstonia solanacearum UW551] gi|206591593|emb|CAQ57205.1| flagellar basal-body rod protein flgf [Ralstonia solanacearum MolK2] gi|206593118|emb|CAQ60024.1| flagellar basal-body rod protein flgf [Ralstonia solanacearum IPO1609] gi|299073638|emb|CBJ53158.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum CFBP2957] Length = 245 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L + + A+N++N+ T GF+ F V ++ D SFV Sbjct: 1 MDRMIYVAMTGAKHLFDQQAASANNLANSSTTGFKAQIDAFHTV--GVQGDGSPTRSFVM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG LD A++G +FA+++ G TR G F+V+ DG++ + SG Sbjct: 59 ASAIGTDMTPGPIETTGRSLDVAIDGQGFFAVQTADGSEAYTRAGAFQVSADGTIETLSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKV----IATMGLYSVDMSQGFVRR 172 + PVL P+ +P D + G I S + + + L S+D S + R Sbjct: 119 Q-PVLGDGG-PVTLPP-DTTVQFAKDGTINAISADNRTPPVSLGRLKLVSIDPSN--LDR 173 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ V + G LE SN + + MI ++++ + + Sbjct: 174 GTDGLFRQRDGQDANVDERVRITGGALEGSNVSLTDSLVNMIEISRQLELQMKALHTGDT 233 Query: 233 SMLEA 237 + A Sbjct: 234 NAQSA 238 >gi|294625275|ref|ZP_06703914.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600449|gb|EFF44547.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 251 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + V D P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVQDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 174 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + G T+ G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEA 237 + + A Sbjct: 235 NGDDNAQSA 243 >gi|70729005|ref|YP_258739.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens Pf-5] gi|68343304|gb|AAY90910.1| flagellar basal-body rod protein FlgF [Pseudomonas fluorescens Pf-5] Length = 246 Score = 191 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 104/251 (41%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARAM--PVFGDSFPARAFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS + TG +LD A+ G+ W A++SP G R G V G L + +G Sbjct: 59 SERPATDFSAGSMVETGRDLDVAVSGNGWIAVQSPDGSESYVRTGSLNVDALGVLRAGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + VG+ G IS + + + L + D+ + Sbjct: 119 -MPVMGNGG-PIAVPPE-QKIEVGQDGTISIRAMGEGPRVMAEVDRIKLVNPDIKN--LT 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G P + V + GFLE SN N++ EM ++ L+++F +++ Sbjct: 174 KGLDGSIKTKDGQPAPADANVQLVSGFLESSNVNAVEEMTAVLALSRQFELHVKMMNSAK 233 Query: 231 --EKSMLEAIR 239 +++M ++ Sbjct: 234 EDDQAMARVLQ 244 >gi|52841452|ref|YP_095251.1| flagellar basal body rod protein FlgF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628563|gb|AAU27304.1| flagellar basal body rod protein FlgF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 248 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 113/250 (45%), Gaps = 17/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISF 58 M+ ++ + +R +A+N++N +T GF+ + + N +Q SF Sbjct: 1 MEPILYNSISGSRSDFKRQEIIANNLANINTPGFKADLYQAQTMYMNNANGNNQFSAHSF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 + + G I+TG +LD A++GD W A++ +G TR G ++ +G L++A Sbjct: 61 ITQNANGIDTSPGEIITTGRDLDVAIDGDGWMAVQDSQGREAYTRGGSLRLNPNGQLITA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGF 169 SGK VL PI IP + +G G IS ++ + L ++D + Sbjct: 121 SGK-VVLGDGG-PISIPP-AQSIEIGSDGTISIVPLEGDVKSLAILDRIKLVTLDRNN-- 175 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + + G+ + S + ++ G LE SN ++ +M MI ++F++ L+ Sbjct: 176 IYKNDEGLIQLKSGAATAN-SNIKLQSGALEGSNVKAIDQMVAMISAGREFDAQMKLLST 234 Query: 230 NEKSMLEAIR 239 + + + + Sbjct: 235 VDDNGQKLAQ 244 >gi|304321133|ref|YP_003854776.1| flagellar basal-body rod protein FlgG [Parvularcula bermudensis HTCC2503] gi|303300035|gb|ADM09634.1| flagellar basal-body rod protein FlgG [Parvularcula bermudensis HTCC2503] Length = 251 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 111/255 (43%), Gaps = 33/255 (12%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-------------- 57 A + R+ +A+N++N T + F++++ + S Sbjct: 1 MAAQQTRVDVIANNIANMSTTAYAARSAVFADLIYRQDVNPGAISSTQGTIVPTGVQLGL 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 V + + G+ T +LD A+EG+ +F + P G +RDG+F+V DG +V+ Sbjct: 61 GVQTQAVSMDMRQGALRQTTNDLDIAIEGNGFFEITLPNGEPAFSRDGKFEVDPDGLMVN 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGF- 169 + G + + D I IP++ + GE+ + +G+ I T+ L S +G Sbjct: 121 SDG-FALADG----ITIPREARQVTISADGEVFAFFDDAVEGQSIGTITLTSFVNPKGLE 175 Query: 170 -----VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + RE + I P +D G+ +++G+LE+S + + E+ +I + + + Sbjct: 176 AMGGNLYRETTASGTPINGQPGQDGLGL-LRQGYLEESGVDVVSEIADLIEAQRGYELNS 234 Query: 225 TLIDENEKSMLEAIR 239 ++ ++ A R Sbjct: 235 KVLTAADEMYASATR 249 >gi|331269338|ref|YP_004395830.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] gi|329125888|gb|AEB75833.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] Length = 263 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 112/265 (42%), Gaps = 27/265 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV----------GA 47 M ++ + E +++N++N TVG++ + KF +V+ Sbjct: 1 MIRGIYTAVSGLINQEAIQDVISNNLANATTVGYKKDDLITRKFKDVMLHNYDKVVRGKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRD 103 ++NDI + + + G TG DFA++G+ +F + + TRD Sbjct: 61 VRNDIGELSMGSKIDETCTNYSQGVLNDTGKSTDFAIQGNGFFVVSRNGRVNNQNLYTRD 120 Query: 104 GRFKVTDDGSLVSASG----KYPVLDMASVPIQIPQKDEIFNV--GEKGEISQKGKVIAT 157 G F + +G LV++SG + + A+ PI + + + ++GEI G+ Sbjct: 121 GHFHIDRNGYLVNSSGDKVIGRNLANGANSPINVLVNNSPAKMACNDRGEIYLNGRPAFK 180 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 M + + + + +++ S P + V VK+ LE SN N M E+ M+ Sbjct: 181 MQVVNFGDYKSLRKIQDNLYSGTNP----RETDNVIVKQNCLEKSNVNVMAEVSDMMMTM 236 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 + F S ++ ++++ + + + Sbjct: 237 RNFESNQKIVQALDETLGKTVNEVG 261 >gi|253574271|ref|ZP_04851613.1| flagellar basal body rod protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846748|gb|EES74754.1| flagellar basal body rod protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 300 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 60/298 (20%), Positives = 113/298 (37%), Gaps = 57/298 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M + +A ++R TV N++N +T G++++ F E++ ++ D Sbjct: 1 MLRGLYTAASGMIAEQRRHDTVTQNIANLNTPGYKSVNTVARSFPEMLISLMGDKQSGNN 60 Query: 52 --IDQKISFVASGKEYLSKEVGSFISTGTELDFAL------------------------- 84 I + ++ V + + + G TG DFAL Sbjct: 61 KQIGKLVTGVFAEESLPAFTQGDLKETGKNTDFALISELSLENPETGGPYAFDASGKFVT 120 Query: 85 -------EGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 + A+FA+E G + TRDG F V G L +++G + VLD PI + Sbjct: 121 EDGEVIYQPQAFFAVEDNEGNVRYTRDGSFTVNAAGELRTSTG-FRVLDTGGNPIILDAG 179 Query: 137 DEIFNVGEK--GEISQKGKV-----IATMGLYSVDMSQGFVRRENSGISPNIPPTPL--- 186 + + G ++ + T+G+ V+ VR N Sbjct: 180 LSVDTLTSDEAGNLTAVDNTGALVDLGTLGITVVEQPYQLVREGNGVFRVADEEAAGVRE 239 Query: 187 --EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G V++G+LE SN ++ M ++ + + S +I ++S+ +A+ I Sbjct: 240 LVPGTDGAVVRQGYLEVSNVDTAQSMVDLLAAQRAYESNQKIIQYYDRSLDKAVNEIG 297 >gi|222834411|gb|EEE72888.1| predicted protein [Populus trichocarpa] Length = 280 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 13/228 (5%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 + + V++N++N T F+ + V + Q +F + + G TG Sbjct: 51 QQAAVSNNLANASTTAFKAQVNMYRAV--PVVGQETQTRAFTLASTPGADMKAGPLSYTG 108 Query: 78 TELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 LD AL+G+ W A++ P G TR G +V+ DG L ++ G PV+ PI IP Sbjct: 109 RNLDVALQGNGWLAVQMPDGSEAYTRAGSLQVSPDGQLQTSLG-LPVMGDGG-PIGIPPG 166 Query: 137 DEIFNVGEKGEISQKGKVIATMGLYSV-------DMSQGFVRRENSGISPNIPPTPLEDL 189 ++G G ++ +G A GL V +G R ++ PL+ Sbjct: 167 ST-VSIGTDGTVTARGPGEAANGLAQVGKLRVVTPPPEGLARGDDGYFRLRPGVDPLQQD 225 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 V V G LE SN N + M +MI ++F +I + + A Sbjct: 226 PNVRVISGALEGSNVNPVESMVEMIANARRFEMQMKMITGADSNDQRA 273 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%) Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T++ G +E+SN + ++ +I + + + I + M I Sbjct: 3 TLQSGSVEESNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLI 48 >gi|33592480|ref|NP_880124.1| flagellar basal body rod protein FlgF [Bordetella pertussis Tohama I] gi|33572126|emb|CAE41668.1| flagellar basal-body rod protein FlgF [Bordetella pertussis Tohama I] gi|332381897|gb|AEE66744.1| flagellar basal body rod protein FlgF [Bordetella pertussis CS] Length = 254 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 15/249 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + + +NM+N +T GFR + V A + ++S VA Sbjct: 1 MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVSTVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S + E+G+ ++TG ELD AL G WFAL++P+G TR G +V +G L +A+G+ Sbjct: 61 S-TPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATGQ 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PVL + I++P + + G ++ G ++ L V+ + + Sbjct: 120 -PVLSDQNAVIEVPDQAS-LTIASDGTVTAIGAGDPPNNILNLGRLKMVNPPPQQLVHGD 177 Query: 175 SGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 G+ P PL + G LE SNA+ M M MI ++F +I Sbjct: 178 DGVFRMPPQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGMIQNARRFEMQMQVIR 237 Query: 229 ENEKSMLEA 237 E +K+ A Sbjct: 238 EADKNAERA 246 >gi|94500242|ref|ZP_01306775.1| flagellar basal-body rod protein FlgF [Oceanobacter sp. RED65] gi|94427541|gb|EAT12518.1| flagellar basal-body rod protein FlgF [Oceanobacter sp. RED65] Length = 249 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I ++ + A+N++N T GFR + + + D ++ Sbjct: 1 MDRALYIAMSGAKQNTLGQTAEANNLANVSTTGFRRDFEQARSM--PVFGDYYPTRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G + TG +LD A++ WFA+ G TR G F+V G LV+ G Sbjct: 59 EERPASDFNPGPLVETGNDLDLAIDNQGWFAVLDANGNEAYTRRGDFQVDGLGRLVN--G 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + L A PI +P E + G +S +G I + L + D++Q + Sbjct: 117 QNQQLIGAGGPIVLPPY-EKVQIAADGTVSIQGVGEEPAVIAGIEQIKLVNPDLTQ--ME 173 Query: 172 RENSGISPNIPPTPL---EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + G+ P V V G++E SN ++++ + Q++ L +++ ++ Sbjct: 174 KGEDGLFRLRDAEPGAIQPADPTVQVASGYVEGSNVSAVHSLTQIMSLHRQYEMQVKMMS 233 Query: 229 ENEKSMLEAI 238 +++ Sbjct: 234 TADENAQTTA 243 >gi|296447447|ref|ZP_06889372.1| flagellar basal-body rod protein FlgF [Methylosinus trichosporium OB3b] gi|296255067|gb|EFH02169.1| flagellar basal-body rod protein FlgF [Methylosinus trichosporium OB3b] Length = 240 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 136/242 (56%), Gaps = 4/242 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQ++F + L+AQL++++R+ T+A+N++N T G+R V F VV D +++ + Sbjct: 1 MQSAFYVSLSAQLSIDKRMETIANNIANAATAGYRADGVSFESVVTKTGAD---AVAYAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +G++Y+S+ G TG D A+ A+FA+ +P G+ TRDGR K+T+ G L + G Sbjct: 58 AGRDYVSRVAGDMQRTGDPFDVAVVRRAFFAIRTPDGVAYTRDGRMKMTETGDLQTV-GG 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YP+LD + + + + G I+Q G+ I +GL+ +D R + + P+ Sbjct: 117 YPILDAGNSAVVLDPTAGPPMISRDGMINQAGRQIGAIGLFMIDGDVKLSRGPGASVIPD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P T + D V++G +E +N N + EM ++I ++ F S++++ D + S +AIR Sbjct: 177 KPATAVLDFGRNGVEQGVVETANVNPVREMVKLISASRAFESVSSMNDLLDSSQRDAIRT 236 Query: 241 IA 242 I Sbjct: 237 IG 238 >gi|182412222|ref|YP_001817288.1| hypothetical protein Oter_0398 [Opitutus terrae PB90-1] gi|177839436|gb|ACB73688.1| protein of unknown function DUF1078 [Opitutus terrae PB90-1] Length = 249 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 104/251 (41%), Gaps = 11/251 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ ALE+ TVA N++++ G+R + FS ++ Sbjct: 1 MNIGLYQSASSLSALERWQETVAQNITSSQVTGYRKRTINFSTQPAGELQSDPRRPVGSE 60 Query: 61 SGKE--------YLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 +G ++ G T + D A++GD +F + P G TR+G F V D Sbjct: 61 AGVPTLFPKVNSGINFVSGETQPTRRDFDVAIQGDGFFQVRRPDGSFAYTRNGEFHVRAD 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 +LV+ +G VL+ PI + + G I Q +A M + + + Sbjct: 121 RTLVTGTGD-EVLNAGGGPITFLPNGDQVAINTDGSIFQGETPVANMSVQRFADNAQLIP 179 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 N P P E ++ + +G+LE+SN + EM ++ +++ + + +I + Sbjct: 180 MPNGYFVPAAGMAP-EAVTQPELLQGYLENSNVTPLREMVDLVIISRAYEANQRMITTLD 238 Query: 232 KSMLEAIRNIA 242 + M +A+ + Sbjct: 239 QQMQKALDMLG 249 >gi|89095665|ref|ZP_01168559.1| flagellar basal-body rod protein [Bacillus sp. NRRL B-14911] gi|89089411|gb|EAR68518.1| flagellar basal-body rod protein [Bacillus sp. NRRL B-14911] Length = 279 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 110/280 (39%), Gaps = 42/280 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKI- 56 M F + L+ ++R + +NM+N++T GF+ + F E++ ++ + Sbjct: 1 MFRGFYTVASGMLSQQRRTEMLTNNMANSNTPGFKADQSSMRAFPEMLLQSAGQLEIPVQ 60 Query: 57 ---------------SFVASGKEYLSKEVGSFISTGTELDFA-------------LEGDA 88 + V + + G TG D A + Sbjct: 61 NRLKMPLNKEIGSINTGVYMQENTPNFLQGDLRETGQNTDLALVDITMPEDEETGISASV 120 Query: 89 WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +F + G TR+G F + +G L +ASG Y VLD IQ+ + F V G+ Sbjct: 121 FFKVSGADGGTRYTRNGDFTLDGEGFLTTASGMY-VLDGQDNRIQL--GSDRFTVSNAGQ 177 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL-----SGVTVKRGFLEDS 202 I+ + A +G + + + +E G+ PL + +G +++GFLE S Sbjct: 178 ITGENGETAQLG-FGFSENPAELIKEGDGLFRTEDGAPLAEAVDNPEAGFALQQGFLESS 236 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N ++ M M+ + F + ++ ++SM + + Sbjct: 237 NVDASRTMTDMMTAYRAFEANQKVLQAYDRSMEKMANEVG 276 >gi|166712061|ref|ZP_02243268.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzicola BLS256] Length = 251 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q STV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W A++SP G TR+G +T + LV+A+G Sbjct: 60 VDQGF-DRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANSQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVLDEGGNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 174 Query: 172 RENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + + G T+ G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFAVSTGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEA 237 + + A Sbjct: 235 NGDDNAQSA 243 >gi|205375362|ref|ZP_03228152.1| flagellar basal-body rod protein [Bacillus coahuilensis m4-4] Length = 270 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 116/271 (42%), Gaps = 32/271 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV------GAIKND 51 M + +A +++ T+A+N++N +T GF+ + F E++ G + N Sbjct: 1 MLRGLYTAASGMIAQQRKTETLANNLANANTPGFKADQTSVRSFPEMLLMSVGQGTLPNQ 60 Query: 52 IDQKISFVASGKEYLSK-----------EVGSFISTGTELDFAL-------EGDAWFALE 93 I + S + +S G TG + D L G + ++ Sbjct: 61 QRSTIPQLNSLQTSISTGVYVQELTPLLSQGDLFETGMKTDIGLYDINVPQGGTVLYTVQ 120 Query: 94 SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 G+ TR+G + +GSLV+++G Y VLD I + +E F V ++GEI Q G+ Sbjct: 121 GENGVSYTRNGNLTLDGNGSLVTSNGYY-VLDTNGNTITL--GNEDFTVNDQGEIIQNGQ 177 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFLEDSNANSMYEMG 211 +A +G+ + + + ++ G+ + +GFLE+SN N M Sbjct: 178 GVAKLGVAYAADASTLRKIGTDLYESDGQLQNAYNVEGLQFQTVQGFLENSNVNESQTMT 237 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M+ + F + L+ +KS+ +A+ I Sbjct: 238 DMMTAYRSFEANQKLLQAYDKSLDKAVNEIG 268 >gi|304407726|ref|ZP_07389377.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] gi|304343209|gb|EFM09052.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] Length = 270 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 105/274 (38%), Gaps = 35/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S + + L+Q+L +ADN++N +TVG++ F +++ K Sbjct: 1 MNGSMINAMVSMNGLQQKLDILADNIANLNTVGYKRKDASFEDLLTNAKQQPSAFKEPGR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + V G TG LD A+EG+A + + +P G TR+G F+ Sbjct: 61 MSPMNYTQGWGVRLATIEPDLSQGPLQQTGNTLDIAIEGNALYEVRTPDGTAYTRNGSFQ 120 Query: 108 VT--DDG--SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATM 158 ++ +G L ++ G ++ PI +P V G + + + Sbjct: 121 LSPLANGSSVLATSDGNL-LMGENDQPIVVPAN-HTIRVDADGTVQAVAGDGSASPVGKL 178 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLED---------LSGVTVKRGFLEDSNANSMYE 209 L + + +ED S V++++G++E SN + E Sbjct: 179 KLLQATRP-SLLTTVADNLYAVAEGVNVEDVLRTVSAGADSKVSLRQGYVEQSNVDMTSE 237 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 M +I++ + + + + SM+ N+ + Sbjct: 238 MTDLINVQRAYQLSARAL-TSSDSMMGFANNLRA 270 >gi|302671949|ref|YP_003831909.1| flagellar basal-body rod protein FlgG1 [Butyrivibrio proteoclasticus B316] gi|302396422|gb|ADL35327.1| flagellar basal-body rod protein FlgG1 [Butyrivibrio proteoclasticus B316] Length = 276 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 97/272 (35%), Gaps = 36/272 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S A + + T+++N++N +T G++ +F ++ + Sbjct: 1 MVRSLWSAATGMNAQQTNVDTISNNLANVNTAGYKAQGAQFKSLLYQELQTVTTTANGAP 60 Query: 56 ---ISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 S V G S + GSF++ A+ GD +F G TR+G F Sbjct: 61 KPVTSQVGLGTRVASINQYFKQGSFLTNDNPAAMAISGDGFFGYLGSDGTSKYYTRNGNF 120 Query: 107 K--VTDDG----SLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEIS------QKG 152 +++ G L +A G V+D+ I + +G G+I Sbjct: 121 SWALSEAGGTTLVLTTAEGN-KVMDINGAEITVDGNRVASRITIGGDGKIYYPDDAGVPQ 179 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPN-------IPPTPLEDLSGVTVKRGFLEDSNAN 205 + +GL+ +G R + T + + +G+LE SN N Sbjct: 180 DLGKQIGLWQFPNREGLERIGSVAFQETPASGAAINENTAAAGIKKSEIVQGYLEGSNVN 239 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 EM +I + + +T I ++ M A Sbjct: 240 VATEMVNLIVAQRAYEMNSTAIQTTDEMMQTA 271 >gi|301631988|ref|XP_002945073.1| PREDICTED: flagellar basal-body rod protein flgF-like [Xenopus (Silurana) tropicalis] Length = 430 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 93/230 (40%), Gaps = 11/230 (4%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 R + +++N++N T GFR F V ++ D F + G Sbjct: 200 AHRQAVLSNNLANVSTNGFRAEMSTFRSV--PMQGDGATTRVFALEATSGHVQTPGQVQR 257 Query: 76 TGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 TG LD G AWFA++ G TR G F+VT G LV+++G PVL PI +P Sbjct: 258 TGRNLDAMAVGPAWFAVQGLDGTEAYTRAGSFQVTQAGQLVTSTG-LPVLSDGGTPIDVP 316 Query: 135 QKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 E +G G ++ Q + + L + + +R N G+ PL Sbjct: 317 PGAE-ITLGADGTLTAQTAGQPPAPVGRIKLATPGLDDPL-QRGNDGLFRTASGAPLAQD 374 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN N++ M MI ++F L+ E A + Sbjct: 375 PNAALLSGALEGSNVNAVESMVGMIAAARQFEQQMRLLQTAESGDKSAAQ 424 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 73/241 (30%), Gaps = 49/241 (20%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A + L + N++N+ TVGF+ + +F E+V + + + G Sbjct: 2 SFQQGLSGLTAASKNLDVIGHNIANSGTVGFKASRTEFDEMVASAIGSANGTNGGIGVGV 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + FA+ T G L Sbjct: 62 KLDDVTQFGTK---------------FAIAETTQDGYT---------AGQLT-------- 89 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG------I 177 I I I G +G V L S +QG N+ Sbjct: 90 ------GINIGPDGTILTRYSNGVTRPEGVV----ALASFRNTQGLSDIGNNLWVETFES 139 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P G ++ G LEDSN + E+ M+ + + S I ++ + Sbjct: 140 GQPTVGQPTSGSFGA-LRSGALEDSNVDLTAELVNMMTAQRAYQSNAQTIKTQDQVISTL 198 Query: 238 I 238 + Sbjct: 199 V 199 >gi|118444095|ref|YP_878000.1| flagellar basal body rod protein FlgG [Clostridium novyi NT] gi|118134551|gb|ABK61595.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] Length = 258 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 116/256 (45%), Gaps = 16/256 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + A ++L+T+++NM+N+ TVG++ + VKF++++ + + ++ Sbjct: 1 MLRSIWNSRSGMAAEMEKLNTISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVTKGK 60 Query: 58 --FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 F +G G+ + TG D A++G+ +F ++ G TR G F + + Sbjct: 61 PQFTGTGVRATEIERDNSQGNLLQTGNNTDIAIDGEGFFKVQDGEGRTFYTRGGSFNIDN 120 Query: 111 DGSLVSASGK-YPVLDMASVPIQIPQ---KDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G++V SG +L+ A V + P K+ F + E+G + KG + ++ + Sbjct: 121 LGTVVDKSGNRLIILNEAGVNVNKPGIGFKNSSFIINEEGYVVGKGNENLRIPIFEPKGN 180 Query: 167 QGFVRRENSGISPNIPPTPLE-DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 ++ N P +E D ++ +G+ E SN + EM +I + F ++ Sbjct: 181 DCMKSIGDNLYVCNEPNLIVEKDTKDFSLLQGYTEQSNVDLGKEMADLIITQRAFQLNSS 240 Query: 226 LIDENEKSMLEAIRNI 241 + ++ M N+ Sbjct: 241 ALKTADE-MWGMANNL 255 >gi|82702454|ref|YP_412020.1| flagellar basal body rod protein FlgF [Nitrosospira multiformis ATCC 25196] gi|82410519|gb|ABB74628.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 250 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 15/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + V+ N++N +T G+R V + +D +FV Sbjct: 1 MDRMIYVAMTGAKHALGQHAAVSHNLANANTPGYRAEINALRAV--PVFSDTLATRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ +T ELD A++G W A++ G TR+G V+ +G L + G Sbjct: 59 DSSVGADFRPGTVQNTARELDVAIQGAGWIAVQLADGSEAYTRNGDLHVSANGVLQTRDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT---------MGLYSVDMSQGFV 170 + D + IQ + +G G IS T + V+ + + Sbjct: 119 LNVLGDTGLISIQ---PNAKVTIGTDGTISTVPAGAGTSEPNLAVAVGRIKLVNPPEAQL 175 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R + G+ E VT+ G LE SN N + M MI L+++F + L+ Sbjct: 176 VRGSDGLFRLSGGGEAEADGNVTLSSGALEGSNVNVVEAMVDMISLSRQFETHMKLLQNA 235 Query: 231 EKSMLEA 237 E + A Sbjct: 236 EGNAQRA 242 >gi|57505520|ref|ZP_00371447.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57016067|gb|EAL52854.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 270 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ + + +L + +N++N +T G++ V ++ I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLEVITNNLANINTSGYKRDDVVIADFKRIFKETKDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 FV S ++Y GS +T LDFA+ D ++ +++ G LT Sbjct: 61 TKDAARFVNSTIDRVPQISQDYTDFSTGSLKATNNPLDFAMTREDTFYLVQTKNGELRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMA------SVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL I I N + G IS G+ Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSNYFNNPEGAGIIIGNGAVHINADKNGNISVDGEDN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ N + +VK+GF + SN N + EM +I Sbjct: 180 ARLFIAQVDDVRALEKDGDNTYKINDLTRIRDLEISNSVKQGFSQGSNVNPVSEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSMLE-AIRNIAS 243 + ++ + + + AI +AS Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQDAINKLAS 268 >gi|222100100|ref|YP_002534668.1| Flagellar basal-body rod protein FlgF [Thermotoga neapolitana DSM 4359] gi|221572490|gb|ACM23302.1| Flagellar basal-body rod protein FlgF [Thermotoga neapolitana DSM 4359] Length = 252 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 108/256 (42%), Gaps = 26/256 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----EVVGAIKNDIDQKIS 57 L +L +A++++N DT G++ + F E+ + I++++ Sbjct: 6 RGIYNASMGMLIDMAKLDRIANDLANVDTAGYKQDREAFRAYLRREIFRQEPDPIEKRVE 65 Query: 58 FVASG---------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + G T A++G+ +F +E TR+G F+V Sbjct: 66 KVPIGPLEYAVVLDEVRSDLSQGPLEETKVPYHLAIDGEGFFRIEFNGQEYFTRNGEFEV 125 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQ 167 G +V+ G Y +LD I+ F V +G + + G VI +G+Y+V+ Q Sbjct: 126 GSGGYIVTNYGGY-LLDENGERIEYFDG---FTVDGEGYVRDENGNVITRIGVYTVENPQ 181 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 F + + P+P E+ + +G++E SN N++ M MI + + + Sbjct: 182 KF----GNTLFTGENPSPTENF---RILQGYVEKSNVNALKAMVDMISAMRHYELSQRAV 234 Query: 228 DENEKSMLEAIRNIAS 243 N++ + I ++A+ Sbjct: 235 LVNDELNGKLINSLAT 250 >gi|327398889|ref|YP_004339758.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] gi|327181518|gb|AEA33699.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] Length = 264 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 23/262 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----------------E 43 M + + QR++ + +N++N +T GF+ + + Sbjct: 1 MFSGVYDAAGGMVIEMQRVNNITNNIANLNTPGFKKEGINVKSWSRIWGMANANLPIPPD 60 Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRD 103 A + K S Y+ G TG +LDFALEG +F + +P+GI TR+ Sbjct: 61 TQAAANFINETKNSTPHLDTNYIDFSQGPLRHTGNKLDFALEGKGFFLVLAPKGIQYTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQ---IPQKDEIFNVGEKGEISQKGKVIATMGL 160 G+F++ DG L+ YPV+ + I I + + GE+ G I + + Sbjct: 121 GQFEINKDGILIQRGTGYPVVGENYL-INHKLIKITGKTILIKNDGEVYSDGVRIDKLAI 179 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + NS SP +P+ +K G+LE SN + EM ++I + F Sbjct: 180 RDFANYTNLKKEPNSMFSPINGESPIPA-PNTFLKEGYLEMSNVTIVNEMVKLIESQRNF 238 Query: 221 NSITTLIDEN-EKSMLEAIRNI 241 +ID + + + RN+ Sbjct: 239 ERYQRVIDSLGNELLSDIARNL 260 >gi|33596141|ref|NP_883784.1| flagellar basal body rod protein FlgF [Bordetella parapertussis 12822] gi|33601542|ref|NP_889102.1| flagellar basal body rod protein FlgF [Bordetella bronchiseptica RB50] gi|33573144|emb|CAE36791.1| flagellar basal-body rod protein FlgF [Bordetella parapertussis] gi|33575978|emb|CAE33057.1| flagellar basal-body rod protein FlgF [Bordetella bronchiseptica RB50] Length = 254 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 15/249 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + + +NM+N +T GFR + V A + ++S VA Sbjct: 1 MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVSTVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S + E+G+ ++TG ELD AL G WFAL++P+G TR G +V +G L +A+G+ Sbjct: 61 S-TPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATGQ 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PVL + I++P + + G ++ G ++ L V+ + + Sbjct: 120 -PVLSDQNAVIEVPDQAS-LTIASDGTVTAIGAGDPPNNILNLGRLKMVNPPPQQLVHGD 177 Query: 175 SGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 G+ P PL + G LE SNA+ M M MI ++F +I Sbjct: 178 DGVFRMPQQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGMIQNARRFEMQMQVIR 237 Query: 229 ENEKSMLEA 237 E +K+ A Sbjct: 238 EADKNAERA 246 >gi|28211310|ref|NP_782254.1| flagellar basal body rod protein FlgG [Clostridium tetani E88] gi|28203750|gb|AAO36191.1| flagellar hook-basal body complex protein [Clostridium tetani E88] Length = 260 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 109/264 (41%), Gaps = 29/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV----------GA 47 M ++ + E + + V +N++N T GF++ + +F +V+ Sbjct: 1 MIRGLYTAVSGMITEEAKQNVVTNNLANVTTPGFKSDNLSVKQFDDVLLYNYDKKVGNKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRD 103 +++D+ + + G T DFA++G +F + + + TR+ Sbjct: 61 VRHDLGGLSMGSKIDEVNTYFQQGMLEKTDRATDFAIQGKGFFVVEREGQGGNERLYTRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMAS-----VPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 G F V + G LV+ SG Y V+ + PI++ E F + ++G I G T+ Sbjct: 121 GHFYVNNRGFLVNDSG-YNVIGRNNDTGAVEPIRL--NTENFTLTKEGNILVDGNTTYTL 177 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + + + + + + VK+ LE SN N++ EM +M+ + + Sbjct: 178 QVADFQNYNDLRKVGHDAYT----GNNAVNSTDYIVKQNTLEKSNVNTIREMIEMMTVMR 233 Query: 219 KFNSITTLIDENEKSMLEAIRNIA 242 F + +I + ++ +A+ I Sbjct: 234 TFETNQKIIQSIDDTLGKAVNEIG 257 >gi|152990358|ref|YP_001356080.1| flagellar basal-body rod protein FlgF [Nitratiruptor sp. SB155-2] gi|151422219|dbj|BAF69723.1| flagellar basal-body rod protein FlgF [Nitratiruptor sp. SB155-2] Length = 238 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 11/242 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV-KFSEVVGAIKNDIDQKISFVA 60 + + + ++L TV +N++N +T GF+ + V + S+ + D + F Sbjct: 5 LQATYVLASGASRAMEQLDTVTNNLANVNTTGFKEMVVKEMSQRLDENGGDSNHLFVFPR 64 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + L+ G T LDFALEG +F ++ LTR+G F + ++G LV +G Sbjct: 65 FKESILNFAQGPLKHTQNRLDFALEGKGFFIVQKGDQKFLTRNGHFLINNEGLLVDQNGH 124 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y +LD A P+++ + NV E G I Q G + + + + D Sbjct: 125 Y-LLDTADKPVRL-EGKSEINVTEDGSIYQNGAFVTKLQIKNYDNVTII-------GDTY 175 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P E V++G+LE SN N + EM +MI ++F+ +I ++ + + Sbjct: 176 YEPQGNELTVDAKVRQGYLESSNINPLMEMTEMIMAQRRFDMYGNMIKSMDQ-LNQKTNE 234 Query: 241 IA 242 I Sbjct: 235 IG 236 >gi|237751806|ref|ZP_04582286.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] gi|229373172|gb|EEO23563.1| flagellar distal rod protein FlgG [Helicobacter bilis ATCC 43879] Length = 285 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 114/283 (40%), Gaps = 40/283 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 MQT + + RL +++N++N +T GF+ V + + ++ D Sbjct: 1 MQTGYYGATGGMITQFNRLDVISNNLANLNTNGFKRDDVVIGDFLRMVQGHQDTLPIPDE 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 +EY VG+ T LDFAL+ + +FA+++P GI TR Sbjct: 61 TKAAAKFINRTMTRVPTIAEEYTDFSVGAMEQTENTLDFALKAPNTFFAVQTPNGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV--LDMASVPIQIPQKDEIFNVGEKGEIS---------QK 151 +G F ++DDG LV+ G + + + + + + NV G +S Sbjct: 121 NGSFSISDDGYLVTQEGFHVLSRDGIDNEGGILMNANMQINVDTNGNVSFKELGNEGMAD 180 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNI---PPTPLEDLSGVT-------VKRGFLED 201 ++ + + D + + S T E L+G V +GFLE Sbjct: 181 NIAGGSLAIVTFDNPKFLKKIGGSLYIEERKEPDNTDSEGLAGANLVYNSGAVTQGFLEK 240 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 SN N++ EM MI + + + ++ + + EAI +A+ Sbjct: 241 SNVNAVLEMTGMIETNRLVDMYSRVMKTHMDELNAEAINKLAA 283 >gi|315637965|ref|ZP_07893151.1| flagellar basal-body rod protein [Campylobacter upsaliensis JV21] gi|315482000|gb|EFU72618.1| flagellar basal-body rod protein [Campylobacter upsaliensis JV21] Length = 270 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 27/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ + + +L + +N++N +T G++ V ++ I+N Sbjct: 1 MQNGYYQATGGMVTQFNKLEVITNNLANINTSGYKRDDVVIADFKRIFKETKDELPIENH 60 Query: 52 IDQKISFVAS--------GKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGI-ILT 101 FV S ++Y GS +T LDFA+ D ++ +++ G LT Sbjct: 61 TKDAARFVNSTIDRVPQISQDYTDFSTGSLKATNNPLDFAMTREDTFYLVQTKNGELRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMA------SVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ D+G LV+ G Y VL I I N + G IS G+ Sbjct: 121 KDGNFQLDDEGYLVNKQG-YKVLSSNYFNNPEGAGIIIGNGAVHINADKNGNISVDGEDN 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ + + +VK+GF + SN N + EM +I Sbjct: 180 ARLFIAQVDDVRALEKDGDNTYKIDDLTRIRDLEISNSVKQGFSQGSNVNPVSEMVGLIE 239 Query: 216 LTQKFNSITTLIDENEKSMLE-AIRNIAS 243 + ++ + + + AI +AS Sbjct: 240 ANRMVEMYQKVMTAHMDDLNQDAINKLAS 268 >gi|317179250|dbj|BAJ57038.1| flagellar basal-body rod protein [Helicobacter pylori F30] Length = 269 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A A RL +++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMAAQFNRLDLISNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGIHQISDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|254496888|ref|ZP_05109736.1| flagellar basal body rod protein FlgF [Legionella drancourtii LLAP12] gi|254353907|gb|EET12594.1| flagellar basal body rod protein FlgF [Legionella drancourtii LLAP12] Length = 247 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 94/250 (37%), Gaps = 14/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M A R +A+N++N T GFRT + + SFV Sbjct: 1 MDPILYNAAGGGRANFSRQEIIANNLANAATPGFRTDLYQAQTMYAQAAGSNSSGNSFVV 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G I+TG LD A+ G+ W A+ G T+ G V +G LV+ASG Sbjct: 61 QNTNSFDLSGGDLITTGRNLDIAINGNGWLAVRDSTGKEAYTKTGSLHVDANGQLVTASG 120 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 K + PI IP + ++G G IS Q V+ + + S+ + + Sbjct: 121 KAVI--GNGGPISIPP-AQSIDIGTDGTISIVPLGDTAQSPAVVDRVKMVSL--PKDNIV 175 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ S + + G LE SN + +M MI + F + L+ Sbjct: 176 KNADGLFQLKTGGVAPFDSNIRLISGALEGSNVQPVEQMVAMITAGRDFETHMNLMSTVS 235 Query: 232 KSMLEAIRNI 241 + + + + Sbjct: 236 DNSQKLAQIL 245 >gi|299066527|emb|CBJ37717.1| Putative flagellar component of cell-proximal portion of basal-body rod (flgF) [Ralstonia solanacearum CMR15] Length = 254 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 19/256 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 MQ F + L++ RL VA N++N T G++ V FS VV A+ + Sbjct: 1 MQEIFAVTLSSMHQDMARLDGVALNLANVSTPGYKRGVVAVQPFSSVVDAVAGQAGARAE 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 + + G+ TG +D AL GD +F + +P G TR G F+ G LV+A Sbjct: 61 DMNGVQVMSDMRPGTVKLTGEPMDVALAGDGFFEVTTPSGPAYTRQGNFRTDAMGRLVTA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----------VIATMGLYSVDMS 166 G YPV+ I + V G +++ IA + + D Sbjct: 121 QG-YPVMGKNGE---IFLTTQTPVVDAAGNVTEPNATTGPSAISPRTPIAQIKVVKFDTP 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + R G+ + + D + V +++G LE+ N +SM EM Q+I + F S+ + Sbjct: 177 KTLQRLG-EGLMASGTGMTVVDDANVQIRQGALENGNVSSMQEMMQLIQTMRHFESVQKV 235 Query: 227 IDENEKSMLEAIRNIA 242 ++ + AIR + Sbjct: 236 TQGYDEMIGTAIRKLG 251 >gi|213161842|ref|ZP_03347552.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 232 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 32/238 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + E TP + +G+ + +G++E SN N E+ Sbjct: 176 TTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVN 232 >gi|325921025|ref|ZP_08182907.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas gardneri ATCC 19865] gi|325548507|gb|EGD19479.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas gardneri ATCC 19865] Length = 251 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q TV+ N++N DTVGF+ +E +I + Sbjct: 1 MDKALYVAMTGARASLQAQGTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + G TG LD +L+ D W +++SP G TR+G +T +G LV+A+G Sbjct: 60 VDQGF-DRSQGHQQVTGNPLDVSLQQDRWLSVQSPDGSEAYTRNGELALTANGQLVTANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + VLD P+ IP + +G G IS Q ++ M + VD + Sbjct: 119 -HAVLDEGGAPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLT 174 Query: 172 RENSGISPNIPPTPLEDL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R G+ N P + +G T+ G LE SN ++ + +MI L ++F +I Sbjct: 175 RRPDGLMRNTSTDPAQAFQIATGKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIK 234 Query: 229 ENEKSMLEA 237 + + A Sbjct: 235 NGDDNAQSA 243 >gi|312880336|ref|ZP_07740136.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] gi|310783627|gb|EFQ24025.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] Length = 264 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 91/254 (35%), Gaps = 25/254 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDID---- 53 M G +A L E+ L V +N++N DT GFR F EV+ Sbjct: 1 MFRGIYSGTSAMLVQEKMLDVVGNNLANVDTSGFRARIAVNKSFPEVLMDRVERYPEEGI 60 Query: 54 -----QKISFVASGK---------EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-I 98 V G + G T LD AL+ + +F ++ G Sbjct: 61 GPKRFNPRGRVPIGTLSLANVLHETAMRTAPGVMQVTNAPLDVALQEEGFFVVQDGAGNT 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 TR G F+ D G LV+ G D +V I +++ ++G++ G V + Sbjct: 121 FYTRSGHFQKNDQGQLVTHDGMLVQGDGGAVEI---GDAVRYSLNDRGQLLVNGAVAGQL 177 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + S ++ E++ V GFLE SN N + EM +MI + Sbjct: 178 QVVRFPTPTRMRHVGKSLLAETPDSGAPEEVEQPKVAVGFLERSNVNVVEEMSRMIEANR 237 Query: 219 KFNSITTLIDENEK 232 + + ++ Sbjct: 238 AYEVAAKTVTIQDE 251 >gi|300817268|ref|ZP_07097486.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] gi|300530244|gb|EFK51306.1| flagellar basal-body rod protein FlgG [Escherichia coli MS 107-1] Length = 261 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 95/267 (35%), Gaps = 32/267 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + +S +A+N++N +T GF+ +V F ++ + Sbjct: 1 MNAALWFSKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q S V + G+ +T ++ A+ G + ++ G I TRDG Sbjct: 61 IMPTGLQFGSGVRIVGTQKTFTEGNVETTDNAMNVAIMGQGFLQVQKANGDIAYTRDGNL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 +V DG L + G I +P GE G ++ + + L Sbjct: 121 QVNADGVLTISQGL-----PLQPEIDVPAGATNVAFGEDGTVTAILPGDSDVTELGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G + E + P ED G T++ LE SN + + EM MI Sbjct: 176 VNFANPAGLSAEGDNLYLETAASGQPTEGVPGEDGLG-TLQDNALEGSNVDIVNEMVAMI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ + + + + Sbjct: 235 TVQRAYEMNAKMVSAADDMLQYISQTL 261 >gi|257095358|ref|YP_003168999.1| flagellar basal-body rod protein FlgF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047882|gb|ACV37070.1| flagellar basal-body rod protein FlgF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 249 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 99/250 (39%), Gaps = 18/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + VA N++N TVG+R ++ +F V I +F Sbjct: 1 MDRLIYTAMSGAKQGLLLQAGVAQNLANATTVGYRAMENRFRAV--PILGSGLATRAFAV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ STG LD A+ G W A++ P G TR G K +G L ++SG Sbjct: 59 DASVANVFQEGALTSTGRPLDVAVRGQGWIAVQGPDGREAYTRAGNLKADANGVLQTSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----------KGKVIATMGLYSVDMSQGF 169 VL PI +P D + G +S V+ + L V+ + Sbjct: 119 -LDVLGEGG-PIALPP-DNNIAIAADGTVSAIPRLGAGAINNVNVVGRIKL--VNPPESD 173 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + R + G+ P VT+ LE SN NS+ M +MI L ++F ++ Sbjct: 174 LVRGDDGLFRTRDGVPAVADETVTLAPEALEGSNVNSVDAMVRMISLARQFEMQIKMLQT 233 Query: 230 NEKSMLEAIR 239 + + A + Sbjct: 234 ADGNARAATQ 243 >gi|163852464|ref|YP_001640507.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens PA1] gi|218531220|ref|YP_002422036.1| flagellar basal-body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240139801|ref|YP_002964278.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254562216|ref|YP_003069311.1| cell-distal portion of basal-body rod biosynthesis protein [Methylobacterium extorquens DM4] gi|163664069|gb|ABY31436.1| flagellar basal-body rod protein FlgG [Methylobacterium extorquens PA1] gi|218523523|gb|ACK84108.1| flagellar basal-body rod protein FlgG [Methylobacterium chloromethanicum CM4] gi|240009775|gb|ACS41001.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens AM1] gi|254269494|emb|CAX25460.1| flagellar biosynthesis; cell-distal portion of basal-body rod [Methylobacterium extorquens DM4] Length = 263 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 92/263 (34%), Gaps = 33/263 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI----- 56 + A E + +++N++N T G++ +V F +++ Sbjct: 1 MRALYAAATGMAAQELNVQVISNNIANLRTTGYKRQQVHFQDLLYQNLRRSGSSTSDQNT 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 S V + + G T + D A+ G+ F + P G +RDG F Sbjct: 61 MLPAGLALGSGVKTTSTARAMSQGPLAQTEKDYDVAIRGEGLFRVRLPDGRTAYSRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + G +V+ G +LD + +P + G + + + L Sbjct: 121 DLDAQGQMVTRDGY--LLDPG---VTVPNTATSVTISATGAVQATMPGQTAPQALGQFQL 175 Query: 161 YSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G ++ P I P + G +++ +LE++N N++ E+ +I Sbjct: 176 ARFVNKVGLESIGDNLFVETAASGPAITGLPGSEGFG-NLQQRYLEEANVNAVTEISSLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEA 237 + + + ++ ++ + Sbjct: 235 AAQRAYEMNSKVVTAADQMLSTT 257 >gi|77918761|ref|YP_356576.1| flagellar basal body rod protein [Pelobacter carbinolicus DSM 2380] gi|77544844|gb|ABA88406.1| flagellar basal body rod protein [Pelobacter carbinolicus DSM 2380] Length = 245 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 12/249 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFV 59 M + L+ L +Q + T++ N+SN +TVGF+ + F ++ ++ I ++++ Sbjct: 1 MNRGTYVALSGALVRQQLMDTISHNLSNNETVGFKKGQSVFKTMLERVQTGEILERVNLA 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + + G+ +G + A++G+ +F +E G I TR G ++ +G L++ Sbjct: 61 EIEEGFTDFSQGTLSPSGIQTHMAIQGEGFFKVEDEAGNIYYTRQGNLRLDYEGHLINNQ 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G +L PI + D F V + G I+ + + LY+ D R+ S Sbjct: 121 G-MALLGEDRRPITLTSPD--FTVDDDGTITLEDGQKIKIPLYTFDDYSVLTRQGGGQFS 177 Query: 179 PNIPPTPLEDLS----GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 +P DL + +G LE SN N M EM M+ T+ F + ++ Sbjct: 178 --VPKGQERDLEILVKDSHIYQGQLERSNVNLMQEMSHMVESTRVFEACQKMLKTYHSIA 235 Query: 235 LEAIRNIAS 243 EA + + Sbjct: 236 AEA-NKLGT 243 >gi|148546708|ref|YP_001266810.1| flagellar basal body rod protein FlgF [Pseudomonas putida F1] gi|148510766|gb|ABQ77626.1| flagellar basal-body rod protein FlgF [Pseudomonas putida F1] Length = 246 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 101/251 (40%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKMLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSM--PVFGDSFPARAFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG +LD + G+ + A+++P G R G + G L + +G Sbjct: 59 TERPGTDFSEGPMVETGRDLDVTVSGNGFIAVQAPDGSEAYVRTGSLNIDALGVLRTGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PVL PI IP + + VG G IS + + + L + D + Sbjct: 119 -MPVLGNGG-PIAIPPE-QKVEVGSDGTISIRSMGEDPRVMAEVDRIKLVNPDTKG--LT 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G+ P + V V GFL+ SN N++ EM ++ L+++F +++ Sbjct: 174 KGQDGLIHTSSGQPADADVNVRVVSGFLQGSNVNAVEEMTSVLALSRQFELHVKMMNAAK 233 Query: 231 --EKSMLEAIR 239 +++M ++ Sbjct: 234 EGDEAMARVLQ 244 >gi|300693339|ref|YP_003749312.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum PSI07] gi|299075376|emb|CBJ34671.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum PSI07] Length = 245 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L + + A+N++N+ T GF+ F V ++ D SFV Sbjct: 1 MDRMIYVAMTGAKHLFDQQAASANNLANSSTTGFKAQIDAFHTV--GVQGDGSPTRSFVM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG LD A++G +FA+++ G TR G F+V DG++ + SG Sbjct: 59 ASAIGTDMTPGPIETTGRSLDVAIDGQGFFAVQTADGGEAYTRAGAFQVGADGTIQTLSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKV----IATMGLYSVDMSQGFVRR 172 + PVL P+ +P D + G I S + + + L ++D S + R Sbjct: 119 Q-PVLGDGG-PVTLPP-DTTVQFAKDGTINAISADNRTPPVSLGRLKLVNIDPSN--LDR 173 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ V + G LE SN + + MI ++++ + + Sbjct: 174 GTDGLFRQRDGQDANVDERVRITGGALEGSNVSLTDSLVNMIEISRQLELQMKALHTGDT 233 Query: 233 SMLEA 237 + A Sbjct: 234 NAQSA 238 >gi|296283227|ref|ZP_06861225.1| flagellar basal-body rod protein FlgF [Citromicrobium bathyomarinum JL354] Length = 248 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 9/248 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKIS 57 M S + L+ + AL +R+ VA+N++NT TVGFR + F E V D + S Sbjct: 1 MDISSYVLLSQEQALRRRMDIVANNLANTSTVGFRREQPMFREYVERADEAIIDDAKPTS 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLV 115 FV + +G+F TG LD ++G + A+E P G TR G V + G L Sbjct: 61 FVLDLRAIHDTSLGAFQPTGNPLDVMIDGPGYLAVELPDGAGTAYTRAGFVSVLETGELA 120 Query: 116 SASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 +A G+ +LD PI +P ++ ++ G + + + + D G + Sbjct: 121 TAGGQ-RLLDEGGQPIVVPPEEVGRVSIAADGSVMGANGALGRLAVTVFDDETGLAPKG- 178 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ L ++ G +E SN + E MI + + + + + + Sbjct: 179 DGLYAGAEGRVLPAEE-TKLRSGGVEGSNVQPIVETTAMIDILRSYQNSVRMTESLNDMR 237 Query: 235 LEAIRNIA 242 A+ + Sbjct: 238 KRALDRLG 245 >gi|225377358|ref|ZP_03754579.1| hypothetical protein ROSEINA2194_03006 [Roseburia inulinivorans DSM 16841] gi|225210783|gb|EEG93137.1| hypothetical protein ROSEINA2194_03006 [Roseburia inulinivorans DSM 16841] Length = 271 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 102/270 (37%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M + + A + + +++N++N +T F++ K +F ++ + Sbjct: 1 MMRALYTAASGMRAQQTNVDNISNNIANVNTTAFKSQKTEFKSLLYQTIQTRTTSANGEE 60 Query: 59 ------VASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 V G S G+ + ++ FA+EG+ +F + G TR+G F Sbjct: 61 KPIGAQVGLGTRVASNTTSYTQGALLEDESKSAFAIEGNGFFQVRGADGTTYYTRNGNFN 120 Query: 108 --VTDDGSLVSASGKYPVLDMASVPIQIPQK--DEIFNVGEKGEISQKGKVIA------T 157 + G+ ++ + YPVLD I +P V G++ A T Sbjct: 121 WSIGPTGTTLTNTDGYPVLDSNGNTIVLPNNVNSGKAVVTTDGQVGYYNNAGAYVSMNRT 180 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMG 211 +GL + G + ++ + +L+ + +G+LE SN EM Sbjct: 181 IGLSQFNNPAGLEKAGSNLLRATNASGAALNEATNANLTRSKIHQGYLEGSNVQVADEMV 240 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + + I ++ + +A N+ Sbjct: 241 NLIVAQRAYQLNSKAITTSDDMLEQA-NNL 269 >gi|238782793|ref|ZP_04626822.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC 43970] gi|238716216|gb|EEQ08199.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC 43970] Length = 251 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 98/257 (38%), Gaps = 23/257 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A A R ++N++N T GFR F V I + + V Sbjct: 1 MDRAIYTAMGAANAALNRQGVTSNNLANASTTGFRAQLSAFRAV--PINGPSVETRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 Y +G+ TG LD AL D W A+E G TR G + +G L +G Sbjct: 59 ESTPYHDDSMGTINQTGRNLDVALPQDGWLAVELLGGGEAYTRAGNIDIDSEGLLR-VNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI +P + E + G I+ G + + L + + +R Sbjct: 118 R-AVLGDGG-PINVPPQAE-LTIAPDGTITALGAGEEPSALAQVGRLKLVNARLQD--LR 172 Query: 172 RENSGISPNIPPTP------LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + G+ +P L + + G LE SN + + M MI + F+ Sbjct: 173 HGDDGLFHIAETSPNAGLMALPADQSLQLAPGALESSNVSPVKSMVDMIATARGFDMNIK 232 Query: 226 LIDENEKSMLEAIRNIA 242 +I + + +A + +A Sbjct: 233 VISAVDDNEKKANQLLA 249 >gi|17548567|ref|NP_521907.1| flagellar basal-body rod protein FlgF [Ralstonia solanacearum GMI1000] gi|17430815|emb|CAD17497.1| probable flagellar basal-body rod protein flgf [Ralstonia solanacearum GMI1000] Length = 245 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L + + A+N++N+ T GF+ F V ++ D SFV Sbjct: 1 MDRMIYVAMTGAKHLFDQQAASANNLANSSTTGFKAQIDAFHTV--GVQGDGSPTRSFVM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG LD A++G +FA+++ G TR G F+V DG++ + SG Sbjct: 59 ASAIGTDMTPGPIETTGRSLDVAIDGQGFFAVQTADGGEAYTRAGAFQVGADGTIQTLSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKV----IATMGLYSVDMSQGFVRR 172 + PVL P+ +P D + G I S + + + L S+D S V R Sbjct: 119 Q-PVLGDGG-PVTLPP-DTTVQFAKDGTINAISADNRTPPVSLGRLKLVSIDPSN--VDR 173 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ V + G LE SN + + MI ++++ + + Sbjct: 174 GTDGLFRQRDGQDANVDERVRITGGALEGSNVSLTDSLVNMIEISRQLELQMKALHTGDT 233 Query: 233 SMLEA 237 + A Sbjct: 234 NAQSA 238 >gi|77359723|ref|YP_339298.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] gi|76874634|emb|CAI85855.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] Length = 247 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 102/249 (40%), Gaps = 14/249 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + L+ A+N++N +T GF+ + + A + ++ F Sbjct: 1 MDKMVYIAASGAKQSLMGLALKANNLANANTTGFKADFAQARSM-QAFGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G TG ELD A+ +AW +++ G T+ G +T +G LV++ G Sbjct: 59 EERPGSNMTSGGIQQTGRELDIAMSDNAWLSVQDASGNEAYTKVGTLNITAEGMLVTS-G 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM------SQGFVRRE 173 V+ PI +P E + G I + + L VD + + + Sbjct: 118 GRQVIGEGG-PIILPVPIEKIEFSKDGAIQVRPQGAPANFLEEVDRLKVVEANNSTLEKG 176 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN--- 230 N G+ P +E + V V G LE SN N ++EM MI ++F L+ Sbjct: 177 NDGLFRPKPNQTVETSANVQVISGALEMSNVNPVHEMVDMISHQRQFELQVKLMKTAEEI 236 Query: 231 EKSMLEAIR 239 ++S + +R Sbjct: 237 DQSQDQLLR 245 >gi|167645396|ref|YP_001683059.1| flagellar basal body rod protein FlgG [Caulobacter sp. K31] gi|167347826|gb|ABZ70561.1| flagellar basal-body rod protein FlgG [Caulobacter sp. K31] Length = 262 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 100/269 (37%), Gaps = 34/269 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + A + + +++N++N +TVGF+ + +F +++ Sbjct: 1 MQALRTAATGMAAQQLNVEVISNNIANMNTVGFKRGRAEFQDLLYQTIERAGAQSSGDGN 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 Q V +G Y E G+ T E D A++G + + P G TR G F Sbjct: 61 VVPTGVQVGGGVKTGSVYRIHEQGTPTMTNNEFDVAIQGKGFLQILLPSGETAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 D G +V+ G Y V I IP + + G + K + + + L Sbjct: 121 STNDQGQIVTEDG-YTVQPG----ITIPANATATIISKTGLVQVKMDGNPAPQTVGQLEL 175 Query: 161 YSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + G N+ P + G T+ + + E SN +S+ E+ +I Sbjct: 176 ANFMNEGGLEAIGNNMYMETAASGAANIAAPGQQGFG-TLLQNYTEASNVDSVSEITSLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + + +I ++ ML+ N+ S Sbjct: 235 VAQRAYEMNSKVITTADQ-MLQTTSNLRS 262 >gi|296122946|ref|YP_003630724.1| hypothetical protein Plim_2702 [Planctomyces limnophilus DSM 3776] gi|296015286|gb|ADG68525.1| protein of unknown function DUF1078 domain protein [Planctomyces limnophilus DSM 3776] Length = 256 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 16/255 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKND 51 M + + R +A+N++N T F+ F + Sbjct: 1 MLYGLYLSAQGAESQAMRQGVLANNLANVGTNAFKPDIAVFRSYFPYDVAHQEPQRAPDT 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 ID + VA GS TG D AL GD ++ L+ +LTRDG F++ D Sbjct: 61 IDLETGGVALEGTITDFSQGSLKPTGKSTDAALLGDGFYQLKMGNETLLTRDGSFELDAD 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMS 166 G LV A PVLD I IP + +G+ G+IS G I+ + + Sbjct: 121 GQLVHAGTGAPVLDPDGSEIVIPPEMIDLQIGDDGQISGVGPNGIVLPISQLAVVVPTRL 180 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +R + S +P E V++GF+E SNA+ M ++I +++ F S + Sbjct: 181 TELQKRGDGMYSTKLPV--AEAPPETRVRQGFVEASNADPMQGTLELIEVSRGFESNVNM 238 Query: 227 IDENEKSMLEAIRNI 241 + ++ + ++ I Sbjct: 239 MRMQDEMLGRLLQAI 253 >gi|299068733|emb|CBJ39972.1| flagellar component of cell-proximal portion of basal-body rod [Ralstonia solanacearum CMR15] Length = 245 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L + + A+N++N+ T GF+ F V ++ D SFV Sbjct: 1 MDRMIYVAMTGAKHLFDQQAASANNLANSSTTGFKAQIDAFHTV--GVQGDGSPTRSFVM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG LD A++G +FA+++ G TR G F+V DG++ + SG Sbjct: 59 ASAIGTDMTPGPIETTGRSLDVAIDGQGFFAVQTADGGEAYTRAGAFQVGADGTIQTLSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKV----IATMGLYSVDMSQGFVRR 172 + PVL P+ +P D + G I S + + + L S+D + V R Sbjct: 119 Q-PVLGDGG-PVTLPP-DTTVQFAKDGTINAISADNRTPPVSLGRLKLVSIDPAN--VDR 173 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ V + G LE SN + + MI ++++ + + Sbjct: 174 GTDGLFRQRDGQDANVDERVRITGGALEGSNVSLTDSLVNMIEISRQLELQMKALHTGDT 233 Query: 233 SMLEA 237 + A Sbjct: 234 NAQSA 238 >gi|15616300|ref|NP_244605.1| flagellar basal-body rod protein [Bacillus halodurans C-125] gi|10176362|dbj|BAB07457.1| flagellar basal-body rod protein [Bacillus halodurans C-125] Length = 274 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 109/274 (39%), Gaps = 35/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKND------ 51 M A + +QR + +N++N +T G++ + F ++ A N Sbjct: 1 MLRGLWGAAAGMITQQQRQEMLTNNLANVNTPGYKADQAAIRAFPNMLIAAMNTGNVPKG 60 Query: 52 ----IDQKISFVASGKEYLSKEVGSFISTGTELDFAL--------EGDA-----WFALES 94 I + + V + + G + T D AL E + ++ +++ Sbjct: 61 VAPVIGELTTGVYLQERMPNFRQGDLVETQNNTDVALLQGVMPTNEENGQPWALFYTVQN 120 Query: 95 PRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-G 152 G TR+G F V DG L + G Y VL P+Q+ +E FNV G I+ + G Sbjct: 121 ENGEVRYTRNGNFTVDGDGFLTTGDGFY-VLGTDGNPLQV--NNEWFNVDGDGMITDEAG 177 Query: 153 KVIATMGLYSVDMSQGFVRRENSGIS----PNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 I + + + V+ N + +P +++GF+E SN ++ Sbjct: 178 AAIGQINVVVAEDPMQLVKEGNGLLRFEGDGELPTGVGNAAVNYQLQQGFIERSNVDAAQ 237 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M +M+ + F + ++ ++S+ +A+ + Sbjct: 238 TMTEMMQAYRTFEANQQVLRAYDESLGKAVNEVG 271 >gi|187778771|ref|ZP_02995244.1| hypothetical protein CLOSPO_02366 [Clostridium sporogenes ATCC 15579] gi|187772396|gb|EDU36198.1| hypothetical protein CLOSPO_02366 [Clostridium sporogenes ATCC 15579] Length = 255 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---SEVVG----------A 47 M S ++ ++LE + T++ N+SN TVG+++ + F +V+ Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 IKN I + G TG DFALEG +F +E+ TRDG F Sbjct: 61 IKNVIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V G LV+ SG Y V+ M I ++ G IS G + + + Sbjct: 121 VDTRGYLVNDSG-YNVMGMNRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFN 179 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ N P ++++G+ V++ LE SN N EM M+ + F + Sbjct: 180 DYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSFETNQ 234 Query: 225 TLIDENEKSMLEAIRNIAS 243 ++ ++++ + + + + Sbjct: 235 KMVQAIDETLGKTVNEVGA 253 >gi|315127352|ref|YP_004069355.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas sp. SM9913] gi|315015866|gb|ADT69204.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas sp. SM9913] Length = 247 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 11/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + Q L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKMVYIAASGAKQSMQGLALKANNLANANTTGFKSDFAQARSM-QAFGEGLPTRV-FAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ +AW +++ G T+ G +T +G L ++ G Sbjct: 59 QERPGSNMTSGGVVETGRSLDIAMSDNAWLSVQDASGNEAYTKVGSLNITAEGMLTTSDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM------GLYSVDMSQGFVRRE 173 + V+ P+ +P E + G I + + L VD + + + Sbjct: 119 R-QVIGEGG-PVILPVPIEKIEFSKDGTIQVRPQGAPANFLEEVDRLKVVDANNATLEKG 176 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 N G+ P +E + V V G LE SN N ++EM MI ++F L+ E+ Sbjct: 177 NDGLFRAKPGQIVETSANVQVLGGTLEKSNVNPVHEMVDMISHQRQFELQVKLMKTAEE 235 >gi|15607023|ref|NP_214405.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] gi|2984276|gb|AAC07801.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5] Length = 241 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 19/242 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF---- 58 + I L E++L +NM+N +T F+ + + F Sbjct: 6 QTIYILGGGMLLQERKLDVSTNNMANVNTPAFKKDYLTAVSYYVPNGQKVQNTNPFEPSN 65 Query: 59 ----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + G+ + T LD A+EG+ +FA+ P GI+ TR G F++ ++G L Sbjct: 66 NYVYPIVNEVIPVLSQGALVKTENPLDLAIEGEGFFAVRGPNGILYTRKGIFRINEEGFL 125 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 + G Y VLD PIQI + + + + G I + +G++++ Q Sbjct: 126 TTEEG-YQVLDENLNPIQI--QGQNVKITKDGTIFVDENPVGRLGIFNLQNIQKLGED-- 180 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 PTP D V +GF E SN N++ EM ++I + LI ++ Sbjct: 181 ---FFQGNPTPATDY---RVYQGFYEASNVNAVKEMVKVIEAVSAHEIFSKLIQMTDEVQ 234 Query: 235 LE 236 + Sbjct: 235 GK 236 >gi|23100412|ref|NP_693879.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831] gi|22778645|dbj|BAC14913.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831] Length = 269 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 114/272 (41%), Gaps = 36/272 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV------------ 45 M + + +++ ++++N++N +T G++ + F E++ Sbjct: 1 MLRGLYTAASGMITQQRQQESLSNNIANANTPGYKADQTTIRAFPELLLQQTGSSSQIPT 60 Query: 46 --GAIKNDIDQKISFVASGK----EYLSKEVGSFISTGTELDFAL--------EGDAWFA 91 G + I Q I + +G + G TG D A+ G +F+ Sbjct: 61 SQGGMNFPISQTIGPINTGVYVQETVPNFAQGDVQETGLSTDVAIIQGQVPDENGFLFFS 120 Query: 92 LESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 +++ G LTR+G F V +G LV+ G Y VLD A PIQ + V +G + Q Sbjct: 121 VQNENGEERLTRNGNFTVDGEGFLVTNQGNY-VLDEAGNPIQ--TNGLDYVVTPEGFV-Q 176 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 +G+ V+ S V+ N + P + ++++G LE SN N+M M Sbjct: 177 TADGTFPLGIRYVEDSNQLVKEGNDLFAGESIDVPAA--ATFSLQQGALEQSNVNTMQTM 234 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M++ + F + ++ ++S+ + + I Sbjct: 235 TDMMNAYRLFETNQRVLRAYDESLGKTVNEIG 266 >gi|308063216|gb|ADO05103.1| flagellar basal-body rod protein [Helicobacter pylori Sat464] Length = 269 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 114/270 (42%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 MQ + A +A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMVAQFNRLDLTSNNLANLNTNGFKRDDAVTGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG ++++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSG-SLRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|260222469|emb|CBA32064.1| Flagellar basal-body rod protein flgF [Curvibacter putative symbiont of Hydra magnipapillata] Length = 246 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 97/243 (39%), Gaps = 11/243 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A R S +A+N++N T GFR + V ++ + F Sbjct: 1 MDRLIYTAMTGANAAASRQSVLANNLANVSTNGFRAQLATYRAV--PLRGEGATTRVFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G + T LD +GDAW ++ G TR+G +V DG+L + +G Sbjct: 59 EATAGHLNTPGPAMRTDRSLDVMAKGDAWLTVQGLDGTEAYTRNGHIEVATDGTLTTGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN 174 VL PI P E V G +S Q VI + L V ++ ++R Sbjct: 119 -LQVLSSDGSPITSPAGAE-LTVQPDGNVSAKVGNQPANVIGRLKLV-VPTAEDPLKRGG 175 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + PL V+ G LE SN N++ M MI ++F + T L+ E + Sbjct: 176 DGLFRTLSGDPLNSEDTARVQAGMLEGSNVNAIEAMVGMIQTARQFEAQTRLMQTAESND 235 Query: 235 LEA 237 A Sbjct: 236 RAA 238 >gi|168182722|ref|ZP_02617386.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|237796078|ref|YP_002863630.1| flagellar basal body rod protein FlgG [Clostridium botulinum Ba4 str. 657] gi|182674102|gb|EDT86063.1| flagellar basal body rod protein [Clostridium botulinum Bf] gi|229264182|gb|ACQ55215.1| flagellar basal body rod protein [Clostridium botulinum Ba4 str. 657] Length = 255 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---SEVVG----------A 47 M S ++ ++LE + T++ N+SN TVG+++ + F +V+ Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 IKN I + G TG DFALEG +F +E+ TRDG F Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V G LV+ SG Y V+ + I ++ G IS G + + + Sbjct: 121 VDTRGYLVNDSG-YNVMGINRNTGAREAIFVGNKTIGTDANGNISLNGVPSYSFQVADFN 179 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ N P ++++G+ V++ LE SN N EM M+ + F + Sbjct: 180 DYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSFETNQ 234 Query: 225 TLIDENEKSMLEAIRNIAS 243 ++ ++++ + + + + Sbjct: 235 KIVQSIDETLGKTVNEVGA 253 >gi|255523680|ref|ZP_05390646.1| flagellar basal body rod protein [Clostridium carboxidivorans P7] gi|255512549|gb|EET88823.1| flagellar basal body rod protein [Clostridium carboxidivorans P7] Length = 259 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 99/264 (37%), Gaps = 28/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGA---------- 47 M S ++ + E + + +N++N TVGF+ + F +V+ Sbjct: 1 MIRSLYTAVSGMITQEAKQDVITNNLANATTVGFKGDNLAVKKFDDVLLQNYDKIVGGKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI----ILTRD 103 ++N I G+ ST DFA++G +FA++ G+ TRD Sbjct: 61 VRNVIGSISLGSKIDAVNTDFTQGNIESTDKATDFAIQGKGFFAVQRNNGVDNGQYYTRD 120 Query: 104 GRFKVTDDGSLVSASG----KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 G F V +G LV+ SG + + + PI + G +S + Sbjct: 121 GHFHVNINGILVNDSGDTVLGRNLQNNSLGPINV--GSGELKCDTSGNVSINNVPTYKLY 178 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + + ++ P + V++ LE SN N + EM M+ + Sbjct: 179 TVDFNDYNTLKKVGDNLYQGTNPTE-----NAAVVRQKSLEKSNINVINEMVSMMTTMRT 233 Query: 220 FNSITTLIDENEKSMLEAIRNIAS 243 F + ++ ++++ +A I S Sbjct: 234 FETNQKVVQALDETLSKAANEIGS 257 >gi|310816830|ref|YP_003964794.1| flagellar basal-body rod protein FlgF, putative [Ketogulonicigenium vulgare Y25] gi|308755565|gb|ADO43494.1| flagellar basal-body rod protein FlgF, putative [Ketogulonicigenium vulgare Y25] Length = 237 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 31 TVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 T G+R V FSE V + Q +S + G +TG D A+EG+ +F Sbjct: 31 TTGYRAEGVAFSEYVVRLGPQ-SQSLSLATARVRQTDFSQGDIGATGASFDLAIEGEGFF 89 Query: 91 ALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 ++ P G +LTR G F + DG L+SA G YP+LD P+ IP + +G G IS Sbjct: 90 MIDHPEGPMLTRAGAFTLGPDGVLLSADG-YPLLDAGEAPVMIPAEAGPVLIGADGTISA 148 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 G VI +GL++ R +G + LE +++G LE SN N++ ++ Sbjct: 149 GGDVIGQIGLFTPTDPLSVTRTSGTGFFSDDNMPYLEG----QIRQGHLEGSNVNAIAQI 204 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + + + +L D ++ + ++ Sbjct: 205 ARMIEVQRAYEFGQSLADREDERIRSTVQ 233 >gi|78777302|ref|YP_393617.1| flagellar basal body rod protein [Sulfurimonas denitrificans DSM 1251] gi|78497842|gb|ABB44382.1| Flagellar basal body rod protein [Sulfurimonas denitrificans DSM 1251] Length = 276 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 111/275 (40%), Gaps = 35/275 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ+ + A + RL T+A+N++N +TVGF+ + F + ++++ Sbjct: 1 MQSGYYSSAAGMVTQFNRLDTIANNLANVNTVGFKEDNLIVGDFMRLYKEARDELPNANH 60 Query: 58 FVASGK--------------EYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTR 102 + + Y +G + LD AL + +F +++P GI LTR Sbjct: 61 TKEAAQFLNRAMNKAPQVVDAYTDFSLGVMQKSNNSLDMALSKEGLFFLVKTPEGIRLTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEI------SQKG 152 DG F D+G LV+ G Y VL PI Q D + + G+I S Sbjct: 121 DGTFTKDDEGKLVTKQG-YEVLPSDYFISKQPIIFNQGDSAIEIDKNGQILTNIPNSMTL 179 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED----LSGVTVKRGFLEDSNANSMY 208 + + + D F+++E G+ +E V +GF+E SN N++ Sbjct: 180 NQLNRLFIAQPDNID-FLKKEGDGLYRYDGAGGVEGLVSFDGSEAVLQGFIEKSNVNAVK 238 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIA 242 M Q+I + +D M +AI +A Sbjct: 239 MMTQLIETNRLVGMYQKAMDTQMNDMNRDAIEKLA 273 >gi|154175436|ref|YP_001408075.1| flagella basal body rod protein [Campylobacter curvus 525.92] gi|112802880|gb|EAU00224.1| flagella basal body rod protein [Campylobacter curvus 525.92] Length = 273 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 114/271 (42%), Gaps = 30/271 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDID---- 53 MQ + A + RL+ +++N++N +T+GF+ V F + ++++ Sbjct: 1 MQNGYYQATAGMVTQFSRLNVISNNLANVNTIGFKRNDVVIGDFERIFKETQDELPLKNH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTR 102 +EY G F + LDFA++ D +F +++P G+ LT+ Sbjct: 61 TKDAAKFLNRTLDRVPQVSEEYTDFSAGGFKYSSNTLDFAIKREDMFFLVDTPNGVRLTK 120 Query: 103 DGRFKVTDDGSLVSASG------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KG 152 +G F + +DG +V+ G Y L IQ+P D +V + G I + Sbjct: 121 NGSFNLDEDGFIVTKEGYRVLPNNYQTLAPEQRGIQVPL-DRSLSVDKNGNIYTMNEGES 179 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + I+ + + + ++ P ++ T+ +G+++ SN N + EM Sbjct: 180 EQISKFFIAQPREIRELKKIGDNLFEPKNLDDVIDIDDADTLMQGYVQMSNVNPVTEMVG 239 Query: 213 MIHLTQKFNSITTLIDENEKSMLE-AIRNIA 242 +I + + ++ + + + A++ +A Sbjct: 240 LIETQRLVDMYQKVMTSHMTDLNQDAVQKLA 270 >gi|149173758|ref|ZP_01852387.1| Flagellar biosynthesisprotein [Planctomyces maris DSM 8797] gi|148847288|gb|EDL61622.1| Flagellar biosynthesisprotein [Planctomyces maris DSM 8797] Length = 274 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 106/256 (41%), Gaps = 17/256 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---------SEVVGAIKND 51 M + A RL +++NM+N +T F+ F + + D Sbjct: 18 MIYGMYLSAQGAEANSVRLDVLSNNMANANTTSFKRDVPIFRVNPPHDQHEGALNPLPGD 77 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 ++ ++ E GS I+T +E D AL+G +F + + + LTR+G + D Sbjct: 78 LENHSGGISLESITTDFEPGSLITTNSEFDLALKGQGFFQVGNAQESFLTRNGSLSIDGD 137 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDM 165 LV+A P+L I++P + + G ++ Q + + + Sbjct: 138 RRLVTADHGMPILTTDGREIKVPIEASHVAITPDGVVTPLDADDQPMGKLGQLAVVMPGA 197 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 V+ + + PLE + + +GFLE S NS+ EM +++ ++ F S Sbjct: 198 LDELVKIGKNLYTTEGRVNPLEGPAN--IAQGFLEASGTNSVEEMMELVTSSRMFESNIN 255 Query: 226 LIDENEKSMLEAIRNI 241 +I ++S+ ++++ Sbjct: 256 MIKLQDESLGRLLQSM 271 >gi|254457917|ref|ZP_05071344.1| flagellar basal body rod protein [Campylobacterales bacterium GD 1] gi|207085310|gb|EDZ62595.1| flagellar basal body rod protein [Campylobacterales bacterium GD 1] Length = 273 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 34/273 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQK-- 55 MQ+ + A + RL T+A+N++N +TVGF+ + F + ++++ K Sbjct: 1 MQSGYYSSAAGMVTQFNRLDTIANNLANVNTVGFKEDNLVVGDFQRLYKEARDELPNKNH 60 Query: 56 ------------ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTR 102 Y VG+ T ++DFAL + +F +++P+G+ LTR Sbjct: 61 SEDGAQFLNRAMTKAPQVVDSYTDFTVGNTQQTDNDMDFALSREGLFFLVKTPQGVRLTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLD----MASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 DG F D+G LV+ +G Y VL A I + + V + G+I + + ++ Sbjct: 121 DGSFTKDDEGRLVTKNG-YEVLPNDYFEAGGNITFNDDENVIKVDKHGQIYKN--IPNSV 177 Query: 159 GLYS-------VDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSMYEM 210 L + +++E + + T L+ L V +GF+E SN N++ M Sbjct: 178 KLVQGSHLFVAQPDNVALLKKEGNNLYRYDGTTDLKSLDNTEAVMQGFVEKSNVNAVKMM 237 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLE-AIRNIA 242 QMI + + M AI IA Sbjct: 238 TQMIETNRLVGMYQKAMSVQMDDMNNDAINKIA 270 >gi|294339842|emb|CAZ88205.1| putative flagellar basal-body rod protein FlgF [Thiomonas sp. 3As] Length = 245 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + I A+ ++ + +N++N +T G+R + +F + + + ++ Sbjct: 1 MDTLWIAATGARAVLRQQAVTTNNLANVNTTGYRGEQAQFRAL--PVYGNALPTSAYTTV 58 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + + G TG LD A+ G W A+++ G TR+G +V+ G L ++ G+ Sbjct: 59 QGNSANLQEGPINHTGRNLDVAIRGSGWIAVQATNGDTAYTRNGDLQVSASGILSTSDGR 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRREN 174 PVL + PI +P E +G G IS Q ++ + V+ ++R Sbjct: 119 -PVLGQSGAPISVPP-LESVQIGADGTISGVPVGSQPNALVVVNRIQLVNPPPAQMQRGA 176 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + P V + G LE SN N + M Q++ T+ F T L+ +++ Sbjct: 177 DGLFRDTQG-PAPADGNVQLAVGALEGSNVNPVQAMIQILDNTRAFEMQTKLMQTVDQNH 235 Query: 235 LEAIR 239 A + Sbjct: 236 QAATQ 240 >gi|148380596|ref|YP_001255137.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 3502] gi|153932501|ref|YP_001384883.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. ATCC 19397] gi|153936688|ref|YP_001388352.1| flagellar basal body rod protein FlgG [Clostridium botulinum A str. Hall] gi|153938096|ref|YP_001391939.1| flagellar basal body rod protein FlgG [Clostridium botulinum F str. Langeland] gi|148290080|emb|CAL84199.1| putative flagellar basal-body rod protein [Clostridium botulinum A str. ATCC 3502] gi|152928545|gb|ABS34045.1| flagellar basal body rod protein [Clostridium botulinum A str. ATCC 19397] gi|152932602|gb|ABS38101.1| flagellar basal body rod protein [Clostridium botulinum A str. Hall] gi|152933992|gb|ABS39490.1| flagellar basal body rod protein [Clostridium botulinum F str. Langeland] gi|295319959|gb|ADG00337.1| flagellar basal body rod protein [Clostridium botulinum F str. 230613] gi|322806968|emb|CBZ04538.1| flagellar basal-body rod protein FlgF [Clostridium botulinum H04402 065] Length = 255 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---SEVVG----------A 47 M S ++ ++LE + T++ N+SN TVG+++ + F +V+ Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISSNLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 IKN I + G TG DFALEG +F +E+ TRDG F Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V G LV+ SG Y V+ + I ++ G IS G + + + Sbjct: 121 VDTRGYLVNDSG-YNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFN 179 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ N P ++++G+ V++ LE SN N EM M+ + F + Sbjct: 180 DYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSFETNQ 234 Query: 225 TLIDENEKSMLEAIRNIAS 243 ++ ++++ + + + + Sbjct: 235 KIVQSIDETLGKTVNEVGA 253 >gi|170755952|ref|YP_001782255.1| flagellar basal body rod protein FlgG [Clostridium botulinum B1 str. Okra] gi|169121164|gb|ACA45000.1| flagellar basal body rod protein [Clostridium botulinum B1 str. Okra] Length = 255 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 107/259 (41%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---SEVVG----------A 47 M S ++ ++LE + T++ N+SN TVG+++ + F +V+ Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTDLAFKKFEDVLMENYDKKLGNKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 IKN I + G TG DFALEG +F +E+ TRDG F Sbjct: 61 IKNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V G LV+ SG Y V+ + I + G IS G + + + Sbjct: 121 VDTRGYLVNDSG-YNVMGINRNTGAREAIFVGSKTIGTDASGNISLNGVPSYSFQVADFN 179 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ N P ++++G+ V++ LE SN N EM M+ + F + Sbjct: 180 DYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSFETNQ 234 Query: 225 TLIDENEKSMLEAIRNIAS 243 ++ ++++ + + + + Sbjct: 235 KIVQSIDETLGKTVNEVGA 253 >gi|95929873|ref|ZP_01312614.1| flagellar basal body rod protein [Desulfuromonas acetoxidans DSM 684] gi|95134169|gb|EAT15827.1| flagellar basal body rod protein [Desulfuromonas acetoxidans DSM 684] Length = 242 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 8/246 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFV 59 M + L+ +A Q + V +N+SN +T+G++ +V+FS V+ A +N +++ Sbjct: 1 MSSGIYATLSGAVARMQTVDVVTNNLSNANTLGYKKDRVQFSAVLDSAKQNQQAGGVNYS 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 G I T E D A+ G+ +F + +P I TR G DG+L++ Sbjct: 61 YVEVAKTDYSQGVLIDTRNEYDVAINGNGFFKVRNPDDGEIYFTRLGALDREPDGTLITR 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 +G++ VL A+ I +P+ D F + E+G I V+ + L D +++ N Sbjct: 121 TGEF-VLSPANETIVLPEGD--FVIDERGRILGNEGVVDELALVDPD-PDLLIKQGNGRY 176 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 S + + + + V +G LE SN ++ E M+ + F + + ++ Sbjct: 177 SYDGDMRVVPNSTDSQVMQGHLEQSNVKAIEETTLMMTSLRAFENYQKAMKNY-FTLESK 235 Query: 238 IRNIAS 243 + I S Sbjct: 236 VNEIGS 241 >gi|237755436|ref|ZP_04584061.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium yellowstonense SS-5] gi|237692400|gb|EEP61383.1| flagellar basal-body rod protein FlgF [Sulfurihydrogenibium yellowstonense SS-5] Length = 236 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 13/239 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV-KFSEVVGAIKNDIDQKISFVASGK 63 I + ++L T +N++N++T GF+ + + + S+ + K + + F Sbjct: 8 IYILASGGERATEQLDTTTNNIANSNTPGFKKLLLREMSQKIPENKGKVGDLLVFPRFMD 67 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + G I T LD A+ GD +F +ES G TR+G F + +G LV +G Y V Sbjct: 68 SPVLNFQGPLIKTENNLDLAIVGDGFFTVESAIGRYYTRNGHFSINQEGYLVDVNGAY-V 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD IQI +D F + KGEI Q G++ + + ++ Q + + Sbjct: 127 LDENFRRIQI--QDSKFQITPKGEIYQNGQITGRIRVVNLQNLQ--------AVGSSYYQ 176 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + +K+G+LE +N N + EM +MI+ ++F+ L + + + I Sbjct: 177 GQEQQTTNFEIKQGYLEGANLNVVKEMVEMINNHRRFDIYMNLAKSLD-MLEGKVNEIG 234 >gi|258514026|ref|YP_003190248.1| hypothetical protein Dtox_0711 [Desulfotomaculum acetoxidans DSM 771] gi|257777731|gb|ACV61625.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 262 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 112/268 (41%), Gaps = 32/268 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M + IG +A A + + + A+N++N +T ++ + +F++++ Sbjct: 1 MIKTLGIGASALNANQTYIDSAANNIANVNTDEYKAERTRFTDLLYNYYYRGTTYPAPTV 60 Query: 55 -------KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G+ E G+ T +D A++G + + SP G + +R G Sbjct: 61 DEKATESSGNGVRIGEVKKVFEPGTIKETSNSMDLAIDGAGFIKVISPDGEELFSRGGVL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLY 161 KV DG + A+G + IQ+P+ + F++ G+++ + IA + +Y Sbjct: 121 KVNSDGVIEDAAGN-----IIEPEIQLPEGLQNFSISPSGQVTVINGAGMKEEIANISIY 175 Query: 162 SVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G + ++N P D G ++++GF E SN + + EM ++I Sbjct: 176 NFINPAGLIAQDNKLYLQTEQSGEAAEGAPGTDGYG-SLRQGFTEMSNVDLIQEMVRLIE 234 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIAS 243 + + I + M +++S Sbjct: 235 AQRAYEINARSIKTADD-MWGMANSLSS 261 >gi|284041496|ref|YP_003391836.1| flagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945717|gb|ADB48461.1| flagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 245 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 14/249 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M A A +QR+ V+++++N T G++ ++V F +++ + D + Sbjct: 1 MLQGLYSAAAGMAAQQQRIDGVSNDLANISTPGYKGVRVGFRDLLYNSQGDQAGETVTAG 60 Query: 61 SGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 +G S++ G+ ++T LD ++EG +F L G I LTRDG F++ G + Sbjct: 61 AGSAASFIGRSQQQGAVLTTDQPLDVSIEGSGFFQLRRADGGIALTRDGSFRLDPLGRVT 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEI--FNVGEKGEISQK-GKVIATMGLYSVDMSQGFVRR 172 S+ G S P+ +P+ I +G G + G+ I + L +V G Sbjct: 121 SSDGLLL-----SPPVTVPRNTPIDRIAIGADGTVRVNDGQQIGRIQLVTVTSPDGLRAL 175 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ++ + +G T+++G LE SN + M M++ + F + I ++ Sbjct: 176 GDNRFAVTPESGAATATNGATLRQGTLEGSNVDMSDAMVDMMNAQRAFQLASRAIHMQDQ 235 Query: 233 SMLEAIRNI 241 MLE + Sbjct: 236 -MLEVANQV 243 >gi|149173757|ref|ZP_01852386.1| flagellar hook basal body protein flgG [Planctomyces maris DSM 8797] gi|148847287|gb|EDL61621.1| flagellar hook basal body protein flgG [Planctomyces maris DSM 8797] Length = 266 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 32/264 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQK 55 + A L +A+N++N+ T ++ + F + + G N + Sbjct: 4 RALYSSATGMAANSFNLDIIANNLANSSTTAYKQSRANFEDIFYENFKLPGVQDNQGNIT 63 Query: 56 ISFVASGKEYL------SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + +A G E GS + + D A+ GD +F + + TR G F + Sbjct: 64 PTGIALGIGTRVQSTEGDFEQGSILPSNGTYDLAIVGDGFFRVNDGTQDLYTRAGNFSLN 123 Query: 110 DDGSLV--SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKG----KVIATMGLY 161 +G+LV SA Y + I IPQ + G +S Q+G + + + Sbjct: 124 ANGNLVMASADKGYQLQPT----ISIPQDAINITISGDGVVSYQQQGSTQIQTAGNIQIA 179 Query: 162 SVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +QG VR+ ++ G P+ P + G +++GFLE SN + E+ ++I Sbjct: 180 RFINNQGLVRQGDNLYTETTGSGPSQFGDPGTEGRG-QLRQGFLEQSNVEPVRELVELIK 238 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + F + ++ ++++ Sbjct: 239 TQRNFELNSQVVQAADQTLQTVAN 262 >gi|15645706|ref|NP_207883.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori 26695] gi|2314244|gb|AAD08138.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori 26695] Length = 269 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ GI TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + L+ + +P D V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMP--DAEIEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAA 267 >gi|260437439|ref|ZP_05791255.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] gi|292810071|gb|EFF69276.1| flagellar basal-body rod protein FlgG [Butyrivibrio crossotus DSM 2876] Length = 284 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 98/279 (35%), Gaps = 42/279 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 M + + +A + + +++N++N ++ G++ +F ++ Sbjct: 1 MMRALYTAASGMIAQQTNVDVISNNLANVNSTGYKASTAEFKSLLYQTLQSRSTSANGDD 60 Query: 52 ---IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 Q + + GS I + + F LEGD F L +P G I+ TR+G F Sbjct: 61 KPIPAQVGTGARTAAITTHFSQGSLIDSTSTFAFGLEGDGLFGLMNPDGEIVYTRNGDFT 120 Query: 108 V---TDDGSLVSASGKYPVLDMASVPIQIPQ--KDEIFNVGEKGEIS---------QKGK 153 V D G ++ +S YPV+D PIQ + G + G Sbjct: 121 VGKTNDGGFMICSSDGYPVVDSDGNPIQFSGEYDVSNLVITSDGSFYYRVIEEKPDENGN 180 Query: 154 ---------VIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGF 198 + MG++ G + +E + +L V +G Sbjct: 181 MHKTERLDDLETRMGVFQFTNPSGLDSIGSSLYKETEASGIAMEEGTYTELKRTKVCQGR 240 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 LE SN EM +I + + + I + + +A Sbjct: 241 LEASNVQVADEMVNLIVAQRAYEMNSKAIQAADDMLGQA 279 >gi|169826608|ref|YP_001696766.1| flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] gi|168991096|gb|ACA38636.1| Flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] Length = 280 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 39/276 (14%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAI----------- 48 F + ++R +++N++N +T GF+ + F +++ + Sbjct: 6 KGFYTVATGMITQQRRTELLSNNLANANTPGFKADQSTIRSFPDMLMSSIGKTNAPANQQ 65 Query: 49 -----KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL------------EGDAWFA 91 + + + + + G ST D AL G +F Sbjct: 66 AGAEYMSQVGALNTGTYLQETLPNYIQGQIYSTDFTTDMALIDGNLPQNEDGVTGSIFFR 125 Query: 92 LESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 L P G TR+G F + G LV+ G Y VL+ A IQ+P D F + E G I Sbjct: 126 LAHPDGGEAYTRNGNFTLDGQGYLVNGQGLY-VLNDAGQRIQLPNDD--FRLDESGAIYV 182 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGI----SPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 + +A +G+ +++N I N+P + T+++ FLE SN +S Sbjct: 183 NNQQVARVGVSYAANPNMLQKQDNGLIRTENGANLPSAYGTNGVSFTLRQNFLEGSNVDS 242 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M ++ + F + ++ ++SM +A+ I Sbjct: 243 GRAMTDLMTAYRAFEANQKVLQAYDRSMEKAVNEIG 278 >gi|237752809|ref|ZP_04583289.1| flagellar basal-body rod protein flgG [Helicobacter winghamensis ATCC BAA-430] gi|229376298|gb|EEO26389.1| flagellar basal-body rod protein flgG [Helicobacter winghamensis ATCC BAA-430] Length = 277 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 36/277 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ + + + RL +A+N++N +T GF+ V + + I Sbjct: 1 MQGGYYNSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIDEQ 60 Query: 52 IDQKISF--------VASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTR 102 F +EY +VG + T DFAL + + +F +E+P GI TR Sbjct: 61 TKDAAQFYNRSLNRVPQIVEEYTDNKVGGMMITDNTFDFALSKENMYFMVETPDGIRYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLD----MASVPIQIPQKDEIFNVGEKGEISQKG------ 152 DG F + + G LV+ G YPVL A I+ V G I + Sbjct: 121 DGSFVLNEQGRLVTKEG-YPVLPREYLDAPQYIEF-IDGFQVEVDSNGNIYTRDLNNEGI 178 Query: 153 ---KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--SGVTVKRGFLEDSNANSM 207 ++A +G+ S + + + ++ S T + V++GFLE SN N + Sbjct: 179 SEMALMANIGVVSFENPKYLKKIGDNLYSYPQERTDEREALERSGAVRQGFLEKSNINVV 238 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 EM +I + + + ++ + + EAI +A+ Sbjct: 239 QEMTGLIETNRLVEAYSKVLKTHMDELNTEAITKLAA 275 >gi|327441046|dbj|BAK17411.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 329 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 106/326 (32%), Gaps = 87/326 (26%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N+SN +T G++ + F +++ ++ + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNISNVNTYGYKKERTIFKDLISQTQSGASGPSTTRG 60 Query: 59 ------VASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRG----------- 97 V G + G+ +TG LD A+ GD +F + Sbjct: 61 GVNAIQVGLGSQLAAIDTIHNAGAMQTTGRTLDLAISGDGFFMVADATDFVQGDPANGEP 120 Query: 98 --------IILTRDGRFKVTDDGSLVSASGKYPV-------------------------- 123 + TR G F + +G LV+ GKY V Sbjct: 121 ATAGGYTSTLYTRAGNFYMDRNGFLVNGDGKYLVGFAGDVTAYDAINPLNAPGSGFEQNK 180 Query: 124 --------------------LDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATM 158 PI+IP + ++ + G IS + T+ Sbjct: 181 PEVAGGTNLIDPATGELIAQGGTTPSPIRIPTTAQSMSISQDGSISFVDSAGDLQYAGTI 240 Query: 159 GLYSVDMSQGFVRRENSGISPN-----IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L S G + ++ I ++ GF+E SN + E +M Sbjct: 241 VLAKFANSGGLEKTGSNYFQTTPNSGAIYAQLATQDGIGSINSGFMEMSNVDLSEEFTEM 300 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + F + + +I +++ + E + Sbjct: 301 IVAQRGFQANSRIITTSDEILQELVN 326 >gi|149375033|ref|ZP_01892806.1| Flagellar basal body rod protein [Marinobacter algicola DG893] gi|149360922|gb|EDM49373.1| Flagellar basal body rod protein [Marinobacter algicola DG893] Length = 250 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 106/250 (42%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +G++ A+N++N T GF+ + + + + ++ Sbjct: 1 MDKALYLGMSGAKQNMLSQRAHANNLANVSTTGFKADFAQARSM--PVFGEHHPTRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ + TG +LD A+EGD W A+++ +G + TR G ++ +G + +SG Sbjct: 59 AERPGTDLSAGALMDTGRKLDVAVEGDGWLAVQNQQGEEVFTRSGSMQIDVNGLMRLSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRE 173 + V+ P+ +P D +G G IS +++ L V+ + + + Sbjct: 119 EM-VMGNGG-PVALPPFD-NVQIGADGTISVVPVGGPPDQLVEVDRLKLVNPPRDALEKG 175 Query: 174 NSGISPNIPPT----PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 G P + + V GFLE SN N++ EM + L++++ ++ Sbjct: 176 VDGFIRRKADQALDGPEPPDATMRVASGFLESSNVNAVEEMISNLQLSRQYEMQVKIMTT 235 Query: 230 NEKSMLEAIR 239 ++ + R Sbjct: 236 ANENAEASAR 245 >gi|331005440|ref|ZP_08328819.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] gi|330420716|gb|EGG95003.1| Flagellar basal-body rod protein flgG [gamma proteobacterium IMCC1989] Length = 258 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 103/263 (39%), Gaps = 29/263 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQK 55 M +FNI + + ++ T+A+N+SN +T G++ KV F ++V I+Q Sbjct: 1 MLDAFNISATGLQSQQTQVETIANNLSNVNTDGYKKSKVIFQDIVSKQLGINTNGLINQA 60 Query: 56 ISFVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTD 110 + G G +T LD ++G + + P G TR G V + Sbjct: 61 SNNTGIGSSANLINKIFTGGDPKATDRPLDIFIQGSGFLEVVMPDGRYGYTRVGNLNVDE 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVD 164 +G L ++ G S +QIP + + +G +S + + L + Sbjct: 121 NGVLTNSDGF-----SLSSLVQIPPDAQDIVIDSEGTVSVSVSGETDLVPVGQLELSTFL 175 Query: 165 MSQGFVRRENSGISPNI------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G P++ P E G T+++GF+E SN N + E+ ++ + Sbjct: 176 NESGLSSLGGGIYLPSLKSGDPSYGQPGEIGFG-TLQQGFIESSNVNLVEELTSLMSAQR 234 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 + ++ + ML I + Sbjct: 235 GYELNARVVQAADD-MLSIINTL 256 >gi|224437224|ref|ZP_03658201.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313143684|ref|ZP_07805877.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] gi|313128715|gb|EFR46332.1| flagellar distal rod protein FlgG [Helicobacter cinaedi CCUG 18818] Length = 277 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 108/275 (39%), Gaps = 34/275 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 MQ+ + + RL +++N++N +T GF+ V + + + +Q Sbjct: 1 MQSGYYNTTGGMVTQFNRLDLISNNLANLNTTGFKRDDVVIGDYLRLFETHKEQLPIEDH 60 Query: 57 -------------SFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTR 102 +EY + VGS T LDFAL+ +A+F +++P GI TR Sbjct: 61 TRKAAKFLNRTMNRVPIISEEYTDRSVGSLAQTDNPLDFALQRDNAFFVIKTPDGIRYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEIS---------Q 150 DG F + +DG LV+ G + I IP + + G + Sbjct: 121 DGNFNIDNDGHLVNKDGHLVLSRDGLDSQEGIIIPTGMYLES-DNNGNLYLRNINNDAIA 179 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--SGVTVKRGFLEDSNANSMY 208 + I + + + + + + D+ + + +GFLE SN N++ Sbjct: 180 EQINIGALAVVGFENPRYLKKVGKNLYEYPQDRLDERDIMQNSAMIAQGFLEKSNVNAVL 239 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIA 242 EM +I + + + ++ + + EAI +A Sbjct: 240 EMSSLIETNRLVDMYSKVMKSHMDDLNTEAITKLA 274 >gi|188527163|ref|YP_001909850.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori Shi470] gi|188143403|gb|ACD47820.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori Shi470] Length = 269 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 MQ + A A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMAAQFNRLDLTSNNLANLNTNGFKRDDAVTGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG ++++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSG-SLRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAA 267 >gi|169827129|ref|YP_001697287.1| flagellar basal-body rod protein flgG [Lysinibacillus sphaericus C3-41] gi|168991617|gb|ACA39157.1| Flagellar basal-body rod protein flgG (Distal rod protein) [Lysinibacillus sphaericus C3-41] Length = 322 Score = 187 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 107/319 (33%), Gaps = 80/319 (25%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N +TVGF+ +V F +++ + + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTVGFKKGRVLFKDLMSQTQAGASAATATRG 60 Query: 59 ------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG----------- 97 V G + + + GS TG LD +EGD +F + G Sbjct: 61 GVNPQQVGLGSQLAAIDTIHGGGSLQGTGRGLDLGIEGDGFFMVADANGAPDPDSGFIGE 120 Query: 98 -----IILTRDGRFKVTDDGSLVSASGKYPVL---------------------------- 124 + TR+G F + +G LV+A GKY V Sbjct: 121 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGEDIVMEADDDGINPDDAPIASGDE 180 Query: 125 --------------DMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDM 165 D PI+IP + ++G G I + K + + Sbjct: 181 GANLFDDDGVLDPEDGEVGPIRIPTTAKEISIGANGTIEYVDLNGNRKWAGQLIMAKFPN 240 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGV-----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G + + V G +E SN + E +MI + F Sbjct: 241 AGGLAKVGGNYYQQTANSGAAYAQVATVAGMGKVVPGTVEMSNVDLSEEFTEMIVAQRGF 300 Query: 221 NSITTLIDENEKSMLEAIR 239 + T +I +++ + E + Sbjct: 301 QANTRIITTSDEVLQELVN 319 >gi|126668559|ref|ZP_01739513.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] gi|126626964|gb|EAZ97607.1| Flagellar basal body rod protein [Marinobacter sp. ELB17] Length = 250 Score = 187 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 107/255 (41%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + IG++ A+N++N T GF+ + + + ++ Sbjct: 1 MDKALYIGMSGAKQNMLAQRAHANNLANVTTTGFKKDFAQARSM--PVFGGHHPTRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ + TG +LD A+EGD+W A+++ G + TR G ++ +G L A+G Sbjct: 59 TERPGTDLSSGALMETGRKLDVAIEGDSWLAVQNNLGEEVFTRSGSLQIDVNGLLRLANG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRE 173 + VL P+ +P D +G G +S +++ L V + + Sbjct: 119 EM-VLGNGG-PVALPPFD-NVEIGADGTVSIVPVGGPPDQLVEVDRLKLVTPPTQALEKG 175 Query: 174 NSGISPNIPPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI-- 227 G P L + V GFLE SN N++ EM + L++++ ++ Sbjct: 176 PDGFIRRKPDQALGGGEPADANARVSGGFLESSNVNAVAEMISNLQLSRQYEMQVKVMST 235 Query: 228 -DENEKSMLEAIRNI 241 EN ++ ++N+ Sbjct: 236 AKENSEAAARLLQNL 250 >gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] gi|254040055|gb|ACT56851.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 187 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 33/267 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 +F I A A + L +A+N++N +T G++ + +F++ + + Sbjct: 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK 60 Query: 56 ---------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGR 105 S V G + TG LD AL G WF +E+P + TR G Sbjct: 61 AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMG 159 F + G LV+A G V I IP++ V G+I + + + Sbjct: 121 FNIDSKGQLVTADGNTLVPG-----IVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLL 175 Query: 160 LYSVDMSQGFVRRENSGISPN-IPPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G ++ ++ + P+ +D+ VK+G+LE SN +++ E+ +MI Sbjct: 176 IANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMI 235 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + +I+ ++ M I + Sbjct: 236 SAQRAYEMNSKVIEAADE-MSSLITKM 261 >gi|326796596|ref|YP_004314416.1| flagellar basal-body rod protein FlgF [Marinomonas mediterranea MMB-1] gi|326547360|gb|ADZ92580.1| flagellar basal-body rod protein FlgF [Marinomonas mediterranea MMB-1] Length = 245 Score = 187 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 16/238 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N T GFR + + + D + Sbjct: 1 MDRALYLAMSGGTQVMNAQGIHANNLANVATTGFRADFEQARSM--QVNGDYYPSRVYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + E G I TG ++D A++GD + A G + TR G ++T G LV+ +G Sbjct: 59 TENPGTRMERGVMIETGRDMDVAIQGDGFIAAMDATGQEVYTRAGDLQLTSAGQLVTGTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PVL A P+ +P D +VG G IS + I + L + D + Sbjct: 119 -LPVLGSAG-PVFLPPLDA-LHVGSDGTISFIPQGGDATQTTSIGRIKLVNTDGEN--LT 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + N G+ PL++ + + + GFLE SN N++ EM +++ L ++F ++D Sbjct: 174 KGNDGLLRTKNGLPLDEDNNIKLISGFLEGSNVNAVEEMTEIMELARRFEMNIKVMDS 231 >gi|170722890|ref|YP_001750578.1| flagellar basal body rod protein FlgF [Pseudomonas putida W619] gi|169760893|gb|ACA74209.1| flagellar basal-body rod protein FlgF [Pseudomonas putida W619] Length = 248 Score = 187 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 19/247 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 + + A+N++N T GF+ + + + D +F + + Sbjct: 7 LYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSM--PVFGDSFPSRAFAMTERP 64 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 G + TG +LD A+ G + A+++P G R G + G L + +G PV Sbjct: 65 ATDFSEGPMVETGRDLDVAVAGQGFIAVQAPDGSEAYVRTGSLNIDALGVLRAGNG-MPV 123 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENS 175 + PI IP + + VG G IS + + + L + D + + Sbjct: 124 IGNGG-PIAIPPE-QKVEVGADGTISIRSMGEDPRVMAEVDRIKLVNPDTKG--LTKGLD 179 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN---EK 232 G+ P V V GFLE SN N++ EM ++ L+++F +++ ++ Sbjct: 180 GLIHTTSGQPAAADVNVKVVSGFLEGSNVNAVEEMTSVLALSRQFELHVKMMNAAKEGDE 239 Query: 233 SMLEAIR 239 +M ++ Sbjct: 240 AMARVLQ 246 >gi|94969949|ref|YP_591997.1| flagellar basal-body rod protein FlgG [Candidatus Koribacter versatilis Ellin345] gi|94551999|gb|ABF41923.1| flagellar basal-body rod protein FlgG [Candidatus Koribacter versatilis Ellin345] Length = 244 Score = 187 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 12/247 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M T + A +A Q+L A +++N +T G+R+ + F V+ S Sbjct: 1 MDTGSYVACAGLVARSQQLDLAAQDLANINTSGYRSQRSAFRAVLAKSAGANLTGWSAAV 60 Query: 58 --FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 F G+ LS+ G+ TG LD LEGD +F +++P G TR G F+++ G+L Sbjct: 61 NNFGTLGETRLSRTPGNLEKTGNPLDLGLEGDGFFVVQTPAGPRYTRRGNFQISSAGALE 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 ++ G YPV +++P + + G +S G + + + S + S Sbjct: 121 TSDG-YPVQGSLGT-VRVPNGE--LAISADGTLSVDGAIAGKLKVVQFAPSTQL--QAES 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE-NEKSM 234 G + P + +V++G +E SN N++ Q++ L + + + + + Sbjct: 175 GSYYSAPAGRESPAANTSVRQGMIESSNVNAIASSIQLVTLQRTAEMLQRALTTFHSEFD 234 Query: 235 LEAIRNI 241 A+ ++ Sbjct: 235 RTAVEDL 241 >gi|315453646|ref|YP_004073916.1| putative flagellar basal-body rod protein [Helicobacter felis ATCC 49179] gi|315132698|emb|CBY83326.1| putative flagellar basal-body rod protein [Helicobacter felis ATCC 49179] Length = 271 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 109/270 (40%), Gaps = 28/270 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + + RL +++N++N +T GF+ V + + +N DQ Sbjct: 1 MTNGYYDATGGMVTEFNRLDQISNNLANLNTNGFKRDDVVVGDFLHLYQNYRDQLPLQDQ 60 Query: 57 -------------SFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 + Y +G+ T +LDFAL +A+FA+++P+GI TR Sbjct: 61 TKQAAKYLNRNLNRVPIISERYTDYSLGAVQKTDGDLDFALSDPNAYFAVQTPQGIAFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEIS--QKGKVI-- 155 DG F + G L + G + + IQ+ +VG G + + + Sbjct: 121 DGSFTIDSQGFLSTKEGYHVLSREGLESGGGIQMLPGAR-VSVGNSGAVFFHDGNEEVPG 179 Query: 156 ATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + + + N+ P +L+ V +GFLE SN N++ EM ++I Sbjct: 180 GNIAVVGFQSQKLLKKIGNNLYTYPQERMAERVELNAPIVHQGFLEKSNVNAVREMTRLI 239 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + ++ + M EAI +A+ Sbjct: 240 EANRLVDMYSKVLRTHMDDMHAEAISKLAT 269 >gi|210134550|ref|YP_002300989.1| flagellar basal-body rod protein [Helicobacter pylori P12] gi|210132518|gb|ACJ07509.1| flagellar basal-body rod protein [Helicobacter pylori P12] Length = 269 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y K +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDKSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + L+ + +P D V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMP--DAEIEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|302878277|ref|YP_003846841.1| flagellar basal-body rod protein FlgF [Gallionella capsiferriformans ES-2] gi|302581066|gb|ADL55077.1| flagellar basal-body rod protein FlgF [Gallionella capsiferriformans ES-2] Length = 247 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 16/246 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + Q+ + V++N++NT+T GFR F V + + +FV Sbjct: 1 MDKLIYTAMTGASHVLQQQAAVSENLANTNTPGFRATLNTFRAV--PLVGEGLPTRAFVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 +F TG LD A+ G W A++ P G TR+G F+++ G L + +G Sbjct: 59 DSTAGFDFTPAAFQPTGRSLDVAVNGTGWLAVQGPDGKEAYTRNGSFQISSSGVLQTRNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + D PI IP + + G IS + V+ + L + D+++ + Sbjct: 119 LNVLSDSG--PITIPPGTQ-LTFAKDGTISTVPEGNQATSVVVVGRLKLVNPDVAK--LE 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ + + + G LE SN +++ M MI L +KF+ ++ + Sbjct: 174 RSGDGMFRMKDGSTAPADAKTEIAPGNLEGSNVSTVEMMVNMISLARKFDMQMKMLQTAD 233 Query: 232 KSMLEA 237 + +A Sbjct: 234 NNAKQA 239 >gi|331007438|ref|ZP_08330615.1| Flagellar basal-body rod protein flgF [gamma proteobacterium IMCC1989] gi|330418745|gb|EGG93234.1| Flagellar basal-body rod protein flgF [gamma proteobacterium IMCC1989] Length = 246 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 13/246 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I + + + ++N++N +T GFR+ + + +G + +F Sbjct: 1 MDKALYIAMTSAKNNMLGQAIRSNNLANANTTGFRSD-FEQARSMGVYYGEGLPTRAFAL 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ I TG +LD A++G + A+++ G TR G V G L + + Sbjct: 60 TETPQTNFAEGALIQTGRDLDVAVKGRGFIAVQAADGREAYTRAGSLYVDSAGVLRTGN- 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD------MSQGFVRRE 173 PV+ A P+ IP+ + +G G +S GK A L VD + +++ Sbjct: 119 NLPVMGNAG-PMAIPEF-QKLEIGLDGIVSIVGKGEAPDALAQVDQIKLVNPDEALLKKG 176 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ ++ V++ GFLE SN N + E+ ++ L +++ L+ E++ Sbjct: 177 ADGLLYAEEDVGIDVD--VSLVSGFLEGSNVNPVNELTHILTLARQYEMSIKLMKTTEEN 234 Query: 234 MLEAIR 239 + R Sbjct: 235 SQASAR 240 >gi|163733143|ref|ZP_02140587.1| flagellar basal-body rod protein FlgG [Roseobacter litoralis Och 149] gi|161393678|gb|EDQ18003.1| flagellar basal-body rod protein FlgG [Roseobacter litoralis Och 149] Length = 246 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 33/250 (13%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID--------------QKISFVASG 62 R+ T+++N+SN T G+ + +F+++ + Q V Sbjct: 1 MRVETISNNLSNMSTTGYNARRAEFADLHYQQMSRPGTVNATDGTVLPTGVQLGLGVRPS 60 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKY 121 + + GS +TG +LD A+EG + + P G TRDG K +G +V++ G Y Sbjct: 61 AVSVQLQQGSLAATGGDLDLAIEGIGFLEVTLPSGQAAYTRDGGLKRDAEGLIVTSDG-Y 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRENS 175 PV I IP ++ GE+ +++ + ++G + Sbjct: 120 PVEPE----IVIPDDARSISINTSGEVFAYFSDATDAELLGQFNMAGFTNAKGLEALGGN 175 Query: 176 GISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + I TP ED G TV++G+LE S+ +++ E+ ++I + + +I Sbjct: 176 LFAETEASGAAIVSTPGEDGLG-TVRQGYLESSSVDAVREITELIEAQRGYEMNAKVISA 234 Query: 230 NEKSMLEAIR 239 ++ M + Sbjct: 235 ADQMMGATTQ 244 >gi|150019059|ref|YP_001311313.1| flagellar basal body rod protein FlgG [Clostridium beijerinckii NCIMB 8052] gi|149905524|gb|ABR36357.1| flagellar basal body rod protein [Clostridium beijerinckii NCIMB 8052] Length = 256 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 111/261 (42%), Gaps = 26/261 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVVGA---------- 47 M F ++ +AL+ V +N++N + G++ K F +V+ + Sbjct: 1 MIRGFYTSVSGLIALQNDQEVVTNNIANVNNTGYKKRELTKSSFEDVMISNRQKLVGDKY 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 +KNDI V G+F ST + DFA++G +F ++ + TRDG FK Sbjct: 61 VKNDIGNLNMGVKVNDVETVFTQGAFKSTDSMTDFAIDGRGFFVAQNGNKEVYTRDGNFK 120 Query: 108 VTDDGSLVSASGKYPVLDMAS-----VPIQIPQKDEIFNVGEKGEISQKGK-VIATMGLY 161 + + G L++ G VL + + PI + D F++ I+ +G + + Sbjct: 121 INNQGYLITNDGS-QVLGINNSTGAREPIYV--GDSKFSIDGDNNINIEGVGAVDKLLTA 177 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 ++ + + P + V V++ FLE SN + E+ +++ + ++F Sbjct: 178 DFQNYNNLEPIGDNYSTMDNPIY----NAKVNVRQNFLESSNVDPSTELVKLMEIKRQFE 233 Query: 222 SITTLIDENEKSMLEAIRNIA 242 + + ++++ +A + Sbjct: 234 TNQKFVKMQDETVQKAASELG 254 >gi|170758901|ref|YP_001787959.1| flagellar basal body rod protein FlgG [Clostridium botulinum A3 str. Loch Maree] gi|169405890|gb|ACA54301.1| flagellar basal body rod protein [Clostridium botulinum A3 str. Loch Maree] Length = 255 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---SEVVGAIKN------D 51 M S ++ ++LE + T++ N+SN TVG+++ + F +V+ + + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I I ++ G + G TG DFALEG +F +E+ TRDG F Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V G LV+ SG Y V+ + I ++ G IS G + + + Sbjct: 121 VDTRGYLVNDSG-YNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFN 179 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ N P ++++G+ V++ LE SN N EM M+ + F + Sbjct: 180 DYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSFETNQ 234 Query: 225 TLIDENEKSMLEAIRNIAS 243 ++ ++++ + + + + Sbjct: 235 KIVQSIDETLGKTVNEVGA 253 >gi|163856436|ref|YP_001630734.1| flagellar basal body rod protein FlgF [Bordetella petrii DSM 12804] gi|163260164|emb|CAP42466.1| flagellar basal-body rod protein FlgF [Bordetella petrii] Length = 249 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 11/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + +NM+N T GFR + V + ++S V Sbjct: 1 MDRIIYTAMGGAARAAEHQAVLNNNMANVSTPGFREQLAMYRSVPVLDGTSLPTRVSTV- 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + ++G+ +TG LD AL G W A+++P+G TR G +V +G L +A G+ Sbjct: 60 TATPGSNFQLGNMETTGRALDVALAGPGWLAIQTPQGEAYTRAGDLQVGVNGLLQTAQGQ 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PVL + I +P+ + G I+ G ++ L V+ + + R + Sbjct: 120 -PVLSDQNGVIDVPELAT-LTIASDGTITALGAGDPPNNILNLGRLKMVNPPETAMVRGD 177 Query: 175 SGISP--NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ PL + + G LE SNA+ + M MI ++F +I E +K Sbjct: 178 DGVFRMAQGGGQPLPADPALRLMSGVLESSNASPIKAMVGMIDNARRFEMQMQVISEADK 237 Query: 233 SMLEA 237 + A Sbjct: 238 NAERA 242 >gi|332296626|ref|YP_004438549.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] gi|332179729|gb|AEE15418.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] Length = 255 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 13/251 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ L+ + L VA+N+SN +T GF+ F++V+ + + + + Sbjct: 1 MDNSIFTAVSGALSSQSALDVVANNISNVNTTGFKESNPTFADVLSQELSFATSRTNPLQ 60 Query: 61 SG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 G LS G ++T DFA+ G +F + TRDG F + +G+L Sbjct: 61 IGAGSKLDSTSLSFTQGPVLTTNDPTDFAISGSGFFVVSDGTNTYYTRDGSFSLDSNGNL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQG 168 V+A G Y ++ I K+ F V G + G+ + + + Sbjct: 121 VTADGLYVQGTNGNINIDTTSKNFVNFTVKPDGSVYSNFSNGQSVLDGKIMVVDFINKNA 180 Query: 169 FVRRENSGISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + + SP++ P+ +G ++ + LE SN + +M +I + + I Sbjct: 181 LINVGGNNFSPSVNSGNPVALSNGYSIIQNALEGSNTDLATQMANLIDYERTYQVNAQAI 240 Query: 228 DENEKSMLEAI 238 ++ + AI Sbjct: 241 TTSDSMLQTAI 251 >gi|226950051|ref|YP_002805142.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] gi|226842618|gb|ACO85284.1| flagellar basal body rod protein [Clostridium botulinum A2 str. Kyoto] Length = 255 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---SEVVGAIKN------D 51 M S ++ ++LE + T++ N+SN TVG+++ + F +V+ + + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I I ++ G + G TG DFALEG +F +E+ TRDG F Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V G LV+ SG Y V+ + I ++ G IS G + + + Sbjct: 121 VDTRGYLVNDSG-YNVMGINRNTGAREAIFVGNKTIGTDASGNISLNGVPSYSFQVADFN 179 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ N P ++++G+ V++ LE SN N EM M+ + F + Sbjct: 180 DYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVNMLTTMRSFETNQ 234 Query: 225 TLIDENEKSMLEAIRNIAS 243 ++ ++++ + + + + Sbjct: 235 KIVQSIDETLGKTVNEVGA 253 >gi|157371206|ref|YP_001479195.1| flagellar basal body rod protein FlgF [Serratia proteamaculans 568] gi|157322970|gb|ABV42067.1| flagellar basal-body rod protein FlgF [Serratia proteamaculans 568] Length = 251 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ S A+N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAARQTLEQQSVTANNLANASTPGFRAQLSALRAV--PVDGPSLLTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T LD AL+ D + A+ P G TR+G +++ G L + G Sbjct: 59 ASTPGADMSQGALNYTARPLDVALQQDGFLAVSLPDGGEAYTRNGNLQISSTGQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + PV+ PI++P E + G IS I + L D + V Sbjct: 118 R-PVMGDGG-PIEVPPSAE-ITIAADGTISALNAGDPPNTLAQIGRLKLVKADARE--VT 172 Query: 172 RENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ P L + V V G LE SN M M MI ++F Sbjct: 173 RGDDGLFRLTPETQQQRGNQLPNDPLVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VIHSVDENEQRA 244 >gi|261837791|gb|ACX97557.1| flagellar basal-body rod protein [Helicobacter pylori 51] Length = 269 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ GI TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSGA-LRQYMLEKSNVNAVREMSTLI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|317180747|dbj|BAJ58533.1| flagellar basal-body rod protein [Helicobacter pylori F32] Length = 269 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N+++EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSGA-LRQYMLEKSNVNAVHEMSTLI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|315586347|gb|ADU40728.1| flagellar basal-body rod protein [Helicobacter pylori 35A] Length = 269 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEKTHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N+++EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGIHQISDSGA-LRQYMLEKSNVNAVHEMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|261839205|gb|ACX98970.1| flagellar basal-body rod protein FlgG [Helicobacter pylori 52] Length = 269 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 111/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|208434303|ref|YP_002265969.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|208432232|gb|ACI27103.1| flagellar basal-body rod protein [Helicobacter pylori G27] Length = 269 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 106/270 (39%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDID---- 53 MQ + A RL ++N++N +T GF+ F + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDE 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPVLSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + L+ + +P V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMPDAA--IEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +K+ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSDSGA-LKQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|89056684|ref|YP_512135.1| flagellar basal body rod protein FlgG [Jannaschia sp. CCS1] gi|88866233|gb|ABD57110.1| flagellar basal-body rod protein FlgG [Jannaschia sp. CCS1] Length = 261 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 105/265 (39%), Gaps = 33/265 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDID 53 + +I A + R+ +++N++N T G+ + F+++ +D Sbjct: 1 MRALDIAATGMSAQQLRVDVISNNIANMSTTGYSPRRADFADLHYQQMVRAGAINASDGT 60 Query: 54 QKISFVASGKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V G ++ E G+ +TG +LD A+EG + + P G TRDG Sbjct: 61 VVPAGVQIGLGVRPAAVTVTWEQGTLGATGGQLDVAIEGRGYLEVTLPSGDNAYTRDGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 + T DG +V+ G + I IP + + GE+ + +++ + + Sbjct: 121 QRTGDGLIVTNDGF-----EVNPGITIPDDAQEITINANGEVFASFRGEIQPQLLGQLNM 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 G + E + P ED G T ++G++E S+ +++ E+ +I Sbjct: 176 VRFTNDNGLEAIGSNLFLETGASGAPLAGDPGEDGMG-TFRQGYVEQSSVDAVREITDLI 234 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + ++ ++ + + Sbjct: 235 EAQRGYELNAKVLTAADQILGATTQ 259 >gi|108562780|ref|YP_627096.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1] gi|107836553|gb|ABF84422.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1] Length = 269 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + L+ + +P D V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMP--DAEIEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGIHQVSDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|268680165|ref|YP_003304596.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] gi|268618196|gb|ACZ12561.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] Length = 267 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 117/266 (43%), Gaps = 25/266 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK-------FSEV--VGAIKND 51 MQ + A + RL+ +++N++N +T F+ V F E ++++ Sbjct: 1 MQNGYYDVTGAMVTQFNRLNVISNNLANLNTTAFKRDDVVVGDFKRIFQEYKEEMPLRDN 60 Query: 52 IDQKISFVASG--------KEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTR 102 + FV + ++Y+ E G +TG LDFAL+ DA+F +E+P GI LT+ Sbjct: 61 TKEASKFVNAAMSRVPHIVEQYIKYEQGGIKNTGNALDFALKRDDAFFMVETPNGIRLTQ 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLD----MASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 +G F + + G L + G YPVL I++P+ E V + G + I M Sbjct: 121 NGSFTLNNVGILTTKEG-YPVLPSTYFQNKQYIEVPEDGE-LRVNQSGALFVGDDEIGQM 178 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 L D + + S + + +G V +GFLE SN N + EM +I + Sbjct: 179 YLVKSDDIKSLTKEGESLYAFKSTDELTQLENGDFVAQGFLETSNINPVSEMVGLIETNR 238 Query: 219 KFNSITTLIDENEKSM-LEAIRNIAS 243 ++ + + +AI +AS Sbjct: 239 LVEMYQKVMKSHMNDLNSDAISKLAS 264 >gi|78044159|ref|YP_359861.1| flagellar hook-basal body rod protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996274|gb|ABB15173.1| flagellar hook-basal body rod protein [Carboxydothermus hydrogenoformans Z-2901] Length = 244 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 13/248 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSE-VVGAIKNDIDQKI 56 M I A ++L TVA+N++N +TVG+R F E ++ ++ + Sbjct: 1 MLRGIYISATGLKAGLKQLDTVANNIANINTVGYRADITVNSGFEEKILNYAGKEVGKLE 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 V YL G ++ TG LDFAL G+ +F +E+P G+ TR G F+V DG L Sbjct: 61 YGVNPDINYLDLSSGKYVPTGRNLDFALVGNGFFVVETPAGLRYTRAGDFQVNRDGYLCL 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVDMSQGFVRREN 174 +G VL PI+I +E V + G I ++ + I + + + Sbjct: 121 PNGS-RVLGEKG-PIKI--DNEELYVEKDGRIYNKERSRYIDRLRVVEPVDPVALEKVGG 176 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + V +G+LE SN + E ++ + S + ++ + Sbjct: 177 NFFVTAANNV---RPGNALVLQGYLEQSNVDPNREYPALLESLRYLQSNARGLKVQDELL 233 Query: 235 LEAIRNIA 242 +A+ ++ Sbjct: 234 SKAVNDLG 241 >gi|299534778|ref|ZP_07048108.1| flagellar basal-body rod protein flgG [Lysinibacillus fusiformis ZC1] gi|298729866|gb|EFI70411.1| flagellar basal-body rod protein flgG [Lysinibacillus fusiformis ZC1] Length = 322 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 107/319 (33%), Gaps = 80/319 (25%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N +T+GF+ +V F +++ + + Sbjct: 1 MLRSMYSGISGLKNFQTKLDVIGNNIANVNTIGFKKGRVNFKDLMSQTQAGASAATATRG 60 Query: 59 ------VASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG----------- 97 V G + + + GS TG LD +EGD +F + G Sbjct: 61 GVNPQQVGLGAQLAAIDTIHGGGSLQGTGRGLDLGIEGDGFFMVADANGAPDPDSGFIDE 120 Query: 98 -----IILTRDGRFKVTDDGSLVSASGKYPVLDMAS------------------------ 128 + TR+G F + +G LV+A GKY V A Sbjct: 121 EGFNNTLFTRNGVFYMDSNGYLVNADGKYLVGVSAGDEIVMEADDDGINPENAPIASGDE 180 Query: 129 ------------------VPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDM 165 PI+IP + ++G G I + K + + Sbjct: 181 GANLFDDDGVLAPDAGDVGPIRIPTTAKEISIGPNGTIEYVDLNGNRKWAGQLIMAKFPN 240 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGV-----TVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + G + + V G +E SN + E +MI + F Sbjct: 241 AGGLAKVGGNYYQQTANSGAAYAQVATVAGMGKVVPGTVEMSNVDLSEEFTEMIVAQRGF 300 Query: 221 NSITTLIDENEKSMLEAIR 239 + T +I +++ + E + Sbjct: 301 QANTRIITTSDEVLQELVN 319 >gi|217033353|ref|ZP_03438784.1| hypothetical protein HP9810_9g106 [Helicobacter pylori 98-10] gi|216944294|gb|EEC23719.1| hypothetical protein HP9810_9g106 [Helicobacter pylori 98-10] Length = 269 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + L+ + +P V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAG--IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|262396033|ref|YP_003287886.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] gi|262339627|gb|ACY53421.1| flagellar basal-body rod protein FlgG [Vibrio sp. Ex25] Length = 243 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 32/242 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-------------SFVASGKEY 65 ++ +++N++N +TVGF+ +V F ++ +I+ ++ S V Sbjct: 1 MTAISNNLANVNTVGFKRDRVVFEDLFYSIQRQPGAQVDQVNEVPSGIQLGSGVRVVGTQ 60 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 G+ +T ELD A+ G +F +E+ G I+ TR+G+F V +G +V++ G Sbjct: 61 KVFTQGNTQNTTQELDLAVMGQGFFQIENSDGQIMYTRNGQFHVNSEGLMVNSQGL---- 116 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGF------VRR 172 IQIP F+VG G ++ + + + L G + R Sbjct: 117 -PLEPQIQIPDNASSFSVGVDGTVTTTTADDPTPQQLGQITLAKFINPAGLEAVGGNLFR 175 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 E P ED +G+ +K+G LE SN + EM MI + + ++ + Sbjct: 176 ETEASGPADELIAGEDGAGL-IKQGALEGSNVQVVEEMVDMITTQRAYEMNAKVVSAADD 234 Query: 233 SM 234 + Sbjct: 235 ML 236 >gi|332673202|gb|AEE70019.1| flagellar basal-body rod protein [Helicobacter pylori 83] Length = 269 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAA 267 >gi|261420740|ref|YP_003254422.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|319768410|ref|YP_004133911.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] gi|261377197|gb|ACX79940.1| fagellar hook-basal body protein [Geobacillus sp. Y412MC61] gi|317113276|gb|ADU95768.1| flagellar hook-basal body protein [Geobacillus sp. Y412MC52] Length = 273 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 69/274 (25%), Positives = 122/274 (44%), Gaps = 33/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISF 58 M S AL++RL T++ N++N++TVGF+ + F+E++ + + D+ Sbjct: 1 MLRSMLTAANTMNALQERLDTISHNIANSNTVGFKRREASFAELLTQQIDRLPNDEAPRE 60 Query: 59 VASGKEY----------LSKEVGSFISTGTELDFALEG-DAWFALESPRG-----IILTR 102 +G Y L + G+ + TG LDFAL + WF + I TR Sbjct: 61 TPAGVRYGNGARLASTMLITKQGALVETGRRLDFALTAENQWFRVRLADQSGAETIGYTR 120 Query: 103 DGRFKV---TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIA 156 G F + + +L ++ G + VLD + PI +P V G ++ G+V+A Sbjct: 121 AGNFSLAPMNGELALTTSDGLF-VLDERNAPIVLPADAHDVQVSPTGTLTATNADGRVVA 179 Query: 157 T--MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYE 209 +G+ + Q R + + P E+L+G ++VK+G LE SN + E Sbjct: 180 RVNLGVTVIRRPQLLEARGGNVYALPNVPGAAEELNGNLRGQISVKQGALEQSNVDLGEE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 M ++ ++ + I +E+ ML I + S Sbjct: 240 MVGLMATSRAYQLNARAISISEQ-MLGLINGMRS 272 >gi|196249721|ref|ZP_03148417.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] gi|196210597|gb|EDY05360.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. G11MC16] Length = 273 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 33/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S + AL+QRL T++ N++N++T GF+ + F+E++ + + Sbjct: 1 MLRSMHTAANTMNALQQRLDTLSHNIANSNTTGFKRREASFAELLTQQVDHLPDDEAPRQ 60 Query: 54 -----QKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTR 102 + + L G TG LDFA + WF + G I TR Sbjct: 61 TPAGMRYGNGAGLASTMLVTAQGPLTETGRALDFAFAAANQWFRVRVTDGNGVATIGYTR 120 Query: 103 DGRFKVTDDG---SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIA 156 G F +T G +LV++ G+ PVLD + PI++P F + G ++ G V+A Sbjct: 121 AGNFSLTPIGGRLALVTSDGR-PVLDETNAPIELPAHATDFQLSPTGTLTATDANGVVVA 179 Query: 157 T--MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYE 209 +G+ + Q ++ + P ++L+G + +K+G LE SN + E Sbjct: 180 RVNLGVTVIRRPQLLEALGDNFFTLPTAPGATQELNGNLRSQIAMKQGALEQSNVDLGEE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + ++ T+ + I +E+ ML I N+ S Sbjct: 240 LIGLMATTRAYQLNARAISISEQ-MLGLINNLRS 272 >gi|315121847|ref|YP_004062336.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495249|gb|ADR51848.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 262 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 101/259 (38%), Gaps = 32/259 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 +F I A A + L +A+N++N +T G++ + +F++ + + Sbjct: 1 MKAFTIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKAAGSPSQSADQ 60 Query: 56 ---------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGR 105 S V G + TG LD AL G WF +E+P + TR G Sbjct: 61 SVVPEGINIGSGVQISSVRNVYTQGELVHTGNSLDLALVGRGWFQVETPDKTVMYTRAGS 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMG 159 F + G LV++ G + I IP++ V G+I + + + Sbjct: 121 FNIDSKGQLVTSDGNTLLPG-----ITIPEEARELTVSRSGQIMAVTGKNSDFQPLGQLL 175 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + G ++ ++ +D +K+G+LE SN +++ E+ +MI Sbjct: 176 IANFVNEAGLRNIGDNLVTRTSVSGEAIISSPDDAGFAHIKQGYLEASNVDAVKEISEMI 235 Query: 215 HLTQKFNSITTLIDENEKS 233 + + + +I ++ Sbjct: 236 SAQRAYEMNSKVIQAADEM 254 >gi|299538000|ref|ZP_07051286.1| flagellar basal-body rod protein [Lysinibacillus fusiformis ZC1] gi|298726582|gb|EFI67171.1| flagellar basal-body rod protein [Lysinibacillus fusiformis ZC1] Length = 277 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 39/278 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAI--------- 48 M F + ++R + +N+SN +T GF+ + F +++ + Sbjct: 1 MFKGFYTVATGMITQQRRTELLTNNLSNANTPGFKADQSTIRSFPDMLMSSIGKTNAPAH 60 Query: 49 -------KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL------------EGDAW 89 + + + + + G +T D AL G + Sbjct: 61 QQAGAEYMSQVGALNTGTYLQETLPNYIQGQIYNTDFTTDMALINGNLPQNEDGVTGSIF 120 Query: 90 FALESP-RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 F LE P G TR+G F + G LV+ G Y VL+ A IQ+P D F + E G I Sbjct: 121 FRLEHPAGGEAYTRNGNFTLDGQGYLVNGQGLY-VLNDAGQRIQLPNDD--FRLDESGAI 177 Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGI----SPNIPPTPLEDLSGVTVKRGFLEDSNA 204 + +A +G+ +++N I N+P + T+++ FLE SN Sbjct: 178 FVNNQQVARVGVSFATNPNMLQKQDNGLIRTENGENLPTAYGANGVSFTLRQNFLEGSNV 237 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +S M ++ + F + ++ ++SM +A+ I Sbjct: 238 DSGRTMTDLMTAYRAFEANQKVLQAYDRSMEKAVNEIG 275 >gi|317177169|dbj|BAJ54958.1| flagellar basal-body rod protein [Helicobacter pylori F16] Length = 269 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + + + +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYHGEGV-HQVSDSSALRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|308061706|gb|ADO03594.1| flagellar basal-body rod protein [Helicobacter pylori Cuz20] Length = 269 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTDGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG ++++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSG-SLRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +AS Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAS 267 >gi|291518270|emb|CBK73491.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 107/272 (39%), Gaps = 33/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G + + ++ T+A+N++N +T+ +++ +F ++ + + Sbjct: 1 MVRSLWSGASGMKGQQVQVDTIANNLANVNTMAYKSQSAQFKTLLYQTLEAESTNAQGET 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK- 107 + V G S G ++ ++ + G+ +FA++ TR+G F Sbjct: 61 KPTSAQVGLGTRVASLNANFTQGPQMANDSKTAMCIIGEGFFAVQDGEETHYTRNGNFTW 120 Query: 108 ---VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG---EKGEIS---QKGKVIAT- 157 T D L ++ G Y VLD A PI +P+ + G S Q G +I T Sbjct: 121 AIGPTGDKVLTTSDG-YQVLDQAGRPITLPRTAGELGFAVNIDDGSCSYKDQAGNIIRTG 179 Query: 158 --MGLYSVDMSQGFVRRENSGISP-NIPPTPL-----EDLSGVTVKRGFLEDSNANSMYE 209 + LY G + + + P+ ++ + +G+LE SN N E Sbjct: 180 QSIALYQFTNRVGLNKIGENLYDESDASGEPISEWNTAGVTRSQIAQGYLEGSNVNVADE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M +I + + + I +MLE N+ Sbjct: 240 MVNLIIAQRAYEMNSKAI-TTSDTMLEQANNL 270 >gi|328958276|ref|YP_004375662.1| flagellar basal body rod protein FlgG [Carnobacterium sp. 17-4] gi|328674600|gb|AEB30646.1| flagellar basal body rod protein FlgG [Carnobacterium sp. 17-4] Length = 289 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 110/287 (38%), Gaps = 49/287 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G+ ++ ++ +++N++N +T F+T +V+F +++ I+ Sbjct: 1 MLKSLYSGVTGMKNIQTKMDVISNNIANVNTTAFKTGRVRFEDMLSQTNASAQAGINAQQ 60 Query: 58 ---FVASGKEYLSKEVGSFISTGTELDFALE-GD-AWFALESPRGIILTRDGRFKVTDDG 112 V G GS STG LDF +E GD ++F + TRDG G Sbjct: 61 VGLGVQVGSIDTVMTGGSLQSTGRALDFGIENGDSSFFTVTDGTNTFYTRDGGLYADPSG 120 Query: 113 SLVSASGKYPV------------------LDMASVPIQIPQKD-----------EIFNVG 143 +LV++SG L PI IPQ + ++V Sbjct: 121 NLVTSSGLQVQGYSQGAPATNDAAFVPGSLGTTMEPINIPQTIPNPDGGDALELQSYSVD 180 Query: 144 EKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGV 192 G I K V+ +GL S G + + + P + G Sbjct: 181 NDGFIVGSYSGGKSMVLGRVGLTSFSNPDGLQKNGGNLYSASANSGDPVAGNPGDAGYG- 239 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V+ GFLE SN + E +MI ++ + + + I ++ + E I Sbjct: 240 SVRSGFLEMSNVDLANEFTEMIVTSRSYQANSRSITTSDTMLEELIN 286 >gi|77457728|ref|YP_347233.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens Pf0-1] gi|77381731|gb|ABA73244.1| flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1] Length = 246 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSM--PVFGDSFPARAFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS + TG +LD A+ G+ + A+++P G R G + G L + +G Sbjct: 59 SERPATDFTPGSLVQTGRDLDVAVSGNGFIAVQNPNGGESYVRTGSLNIDALGVLRAGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + VGE G IS + + + L + D+ + Sbjct: 119 -MPVMGNGG-PIAVPPEQQ-VEVGEDGTISIRAMGEGPRVMAEVDRIKLVNPDIKN--MN 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G P + V + GFLE SN N++ EM ++ L ++F +++ Sbjct: 174 KGLDGSIYTKDGQPAPADANVKLVSGFLESSNVNAVEEMTSVLALAKQFELHVKMMNTAK 233 Query: 231 --EKSMLEAIR 239 +++M ++ Sbjct: 234 DDDQAMARVLQ 244 >gi|209884526|ref|YP_002288383.1| flagellar basal-body rod protein FlgG [Oligotropha carboxidovorans OM5] gi|209872722|gb|ACI92518.1| flagellar basal-body rod protein FlgG [Oligotropha carboxidovorans OM5] Length = 262 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T G++ F +++ + + S Sbjct: 1 MRALYTAATGMAAQELSVQVISNNIANLRTTGYKKQMASFQDLLYEHVQRVGAQASDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G+ + G +L+ A+ G+ +F ++ P TRDG F Sbjct: 61 VLPVGIDIGGGVKTVGTPRLMTQGTLLPVGGDLNIAVRGEGYFKIQLPDSTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 G +V+A G + I +PQ + +G++S VI +GL Sbjct: 121 TTDGQGRIVNAQGNFL-----QPTIAVPQNASQLTINAQGQVSVMLPGSTTPSVIGQIGL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 G ++ + P +D T +++G LE +N + E+ +I Sbjct: 176 TRFINKAGLQSIGDNLFTDTPASGPPQDGIANTDGFGDIQQGNLEQANVEVVSEISDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + ++ ++ M Sbjct: 236 AQRAYEMNAKVVSAADQMMQST 257 >gi|163794151|ref|ZP_02188124.1| hypothetical protein BAL199_02019 [alpha proteobacterium BAL199] gi|159180765|gb|EDP65284.1| hypothetical protein BAL199_02019 [alpha proteobacterium BAL199] Length = 240 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 6/242 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I L+ Q AL +++S VA+N++N +T F+ + + A K Q + FV Sbjct: 1 MDNPVYIALSRQTALRRQMSVVANNVANANTTAFKREVMIYQT--YAQKAPFTQTMDFVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G+ T D + G +F ++ G TR+G F + LV+ G Sbjct: 59 DQGTATDQHQGNLKVTHNTFDMGINGPGYFQVDDGSGTKYTRNGTFTLDQQNRLVTQDGN 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 P+LD PI IP V + G I ++I +G+ ++ + +S + Sbjct: 119 -PILDTQGNPILIPSGGSDLTVSKDGVIRLGDQLIGRLGIVEFADNRILQKVRDSLFETD 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P ++ V +G +E SN N++ EM MI + + + + TL+D +K I+ Sbjct: 178 QVPEPAQESE---VMQGMIETSNVNAITEMTSMIDVHRAYEAAKTLLDREDKRQDTIIQR 234 Query: 241 IA 242 +A Sbjct: 235 LA 236 >gi|56460251|ref|YP_155532.1| flagella basal body rod protein [Idiomarina loihiensis L2TR] gi|56179261|gb|AAV81983.1| Flagella basal body rod protein [Idiomarina loihiensis L2TR] Length = 247 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 107/245 (43%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ ++ A+N++N +T F+ ++ + + A + ++ F Sbjct: 1 MDKMLWVAMSGAKENMNAVAVRANNLANANTTAFKGD-LQQARAMQAFGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ +TG +D A++ W A++ G TR+G +V DG L +++G Sbjct: 59 TESPGQNFASGAIQTTGRNMDVAIKDQGWIAVDDGSGNERYTRNGSLEVGTDGLLKNSTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + VL PI +P + +G G +S + +VI + L V+ G + Sbjct: 119 Q-TVLGNNG-PIFVPMPIDNLVIGANGNVSIRPMGAPANAMEVIDRIKL--VNPPNGNME 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + N G+ + V ++ G LE SN NS+ EM MI L +++ L+ + Sbjct: 175 KGNDGLFKLKDDQQAFADANVKLQIGALEGSNVNSVEEMTHMIALQRQYEMNVKLMKTAD 234 Query: 232 KSMLE 236 ++ Sbjct: 235 ENAQR 239 >gi|194014627|ref|ZP_03053244.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Bacillus pumilus ATCC 7061] gi|194013653|gb|EDW23218.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Bacillus pumilus ATCC 7061] Length = 263 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 25/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ + +L VA+N++N +T G++ ++ F ++V G N Sbjct: 1 MLRSLYSGISGMKNFQTKLDVVANNVANVNTHGYKKSRITFKDMVSQTISSSGGPTNNSG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+ +T + DF + GD +F +E ++ TR G F Sbjct: 61 SINSKQVGLGSSLSSIDKIMSAGASQNTDRDYDFYINGDGFFRIEKQGEVLYTRAGNFTR 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVD 164 +GSL ++ G Y VL M I IP +VG G IS + + + L S Sbjct: 121 DSEGSLTTSDGNY-VLGMNGQKITIPDGISSVSVGPDGTISVVENNVSRNVGQVSLVSFS 179 Query: 165 MSQGFVRRENSGI-------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + G + + +P+ P P E +G+ ++ G LE SN + E +MI Sbjct: 180 NAAGLDKVGENLYRQTLSSGAPSNPIVPGEQGTGI-IQTGRLEMSNVDLTDEFTEMIIAQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F S I +++ + E + Sbjct: 239 RGFQSNAKTITTSDEILQELVN 260 >gi|168186143|ref|ZP_02620778.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] gi|169295828|gb|EDS77961.1| flagellar basal-body rod protein FlgG [Clostridium botulinum C str. Eklund] Length = 257 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 106/255 (41%), Gaps = 15/255 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + A ++L+ +++NM+N TVG++ + V+F++++ + +S Sbjct: 1 MLRSIWNSRSGMSAEMEKLNAISNNMANATTVGYKKVDVQFNDLMQENLDRYGYPVSKGN 60 Query: 58 --FVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 F +G G+ + T D A++G +F ++ +G TR G F + + Sbjct: 61 PQFTGTGVRTTELERDNAQGNLLQTNKNTDIAIDGHGFFKVQDGKGRTFYTRGGSFNIDN 120 Query: 111 DGSLVSASGK-YPVLDMASVPIQIPQKD---EIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G++V G +L+ I P F + E+G +S A + +Y+ Sbjct: 121 SGTVVDKDGNKLVILNERGENINNPGAGFRTTSFKINEEGYVSGGPNTNARIPIYTSIGD 180 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++ P T + V++ +GF E SN + EM +I + F ++ Sbjct: 181 NSMKSIGDNLYVPENANTIVVQNEDVSLLQGFTEQSNVDLGKEMADLIITQRAFQLNSSA 240 Query: 227 IDENEKSMLEAIRNI 241 + ++ M N+ Sbjct: 241 LKTADE-MWGMANNL 254 >gi|254446126|ref|ZP_05059602.1| conserved domain protein [Verrucomicrobiae bacterium DG1235] gi|198260434|gb|EDY84742.1| conserved domain protein [Verrucomicrobiae bacterium DG1235] Length = 250 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 8/249 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQ 54 M AA LE +++A N++ + T G++ + F V + + Q Sbjct: 1 MLNGVYQNAAAMTGLENWNNSIAQNIAQSSTPGYKKAMLSFEGVEAGSVGIKNSFGNTLQ 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGS 113 S G + GS ++T E DFALEGD +F L + G + TRDG+FK+ D G Sbjct: 61 HASIQTKGVGAVDFSSGSIVTTNGEFDFALEGDGFFELRADDGQLVYTRDGQFKMNDQGE 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 LVS G + V+ IQ+ G + Q G+ +A M + V+ + +R Sbjct: 121 LVSKQGFH-VMSDTRNIIQLIPDGGRLQAANDGTLRQGGQKVAEMSIRGVENPEYMIRSN 179 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 I + V+ G LE SN ++ EM +I++++ F +I +++ Sbjct: 180 GGFILGPNNEEAARHIEAPFVRHGSLEQSNVSATTEMINLINVSRSFQINQRVIQQHDDV 239 Query: 234 MLEAIRNIA 242 + +AI+ + Sbjct: 240 LGKAIQTLG 248 >gi|313682109|ref|YP_004059847.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] gi|313154969|gb|ADR33647.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] Length = 270 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 26/267 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQT + +A R+ T+A N++N +T G++ ++ F+ + ++++ Sbjct: 1 MQTGYYAATGGMVAQFNRMDTIASNLANANTAGYKRDQLITGDFARLYKTAQSELPIANQ 60 Query: 58 FVASGK--------------EYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTR 102 A+ + Y + +G+ T D AL + +FA+ +P+GI LTR Sbjct: 61 TEAAAQYFNRALSRVPQITDAYTDQSLGAMQRTDNTFDLALSKEGQFFAVNTPQGIRLTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIA-- 156 DG F + D+G LV+ G + VL PI +D + + + G+ S +++A Sbjct: 121 DGSFTLNDEGKLVNKQG-HEVLAADKTPITFNPQDSVITLDKNGQFSTNVPGTTQMVANK 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + + + ++ N+ P +V +GF+E SN N++ EM ++ Sbjct: 180 RLLVVEPQNIRNIMKEGNNLYLPEAADPLTPLAESGSVMQGFIEKSNVNAVNEMIALVEA 239 Query: 217 TQKFNSITTLIDENEKSMLE-AIRNIA 242 + +D + + AI +A Sbjct: 240 NRLVGMYQKAMDSQMNDLNKDAIEKLA 266 >gi|225850286|ref|YP_002730520.1| flagellar basal-body rod protein FlgF [Persephonella marina EX-H1] gi|225645268|gb|ACO03454.1| flagellar basal-body rod protein FlgF [Persephonella marina EX-H1] Length = 238 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 11/239 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV-KFSEVVGAIKNDIDQKISFVASGK 63 I + ++L T ++N++N +T GF+ + + + S+ + K + F Sbjct: 8 IYILASGGARAIEQLDTTSNNLANVNTPGFKKLLMREMSQTIPENKGNKKHLFVFPRFQD 67 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + G+ T LD A+ G +F +E+ +G+ LTR G F + DG +V +G Y + Sbjct: 68 TPVILSQGALKKTDNPLDIAIFGSGFFTIETGQGVFLTRSGHFLLNSDGYIVDPNGNY-L 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD I++ ++ V + GEI QKGK +A + + + + + G +P Sbjct: 127 LDREGKRIKL-EESSGITVNQNGEIFQKGKKVARINIVNYENIRHIGHSYYQGEGQEVP- 184 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + ++K+GFLE SN N + M ++I+ ++F L+ + +M + I Sbjct: 185 ------ADYSLKQGFLEQSNTNGIEAMIELINAQRRFEIYGNLMRSLD-AMEQKSNEIG 236 >gi|87306342|ref|ZP_01088489.1| FlgF [Blastopirellula marina DSM 3645] gi|87290521|gb|EAQ82408.1| FlgF [Blastopirellula marina DSM 3645] Length = 255 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 100/254 (39%), Gaps = 16/254 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 M I A QR+ +A+N++N DT GF+ D Sbjct: 1 MPYGLYIAAEGAQAQAQRVEVLANNIANVDTTGFKRDLAVLQARYSQAIEDGKDYPNSGS 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 I+ V ++ G T D A+ GD +F +E LTR G F T D Sbjct: 61 INDVGGGVYVSEKVTDYSRGVLKGTNVPTDLAIAGDGFFQVEIDGETYLTRAGNFTFTAD 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVG----EKGEISQKGKVIATMGLYSVDMSQ 167 G+LV+ +G VLD P+Q+ + +VG E G + G V+ + + Sbjct: 121 GALVTPAGN-AVLDAEGEPVQVDPEALANHVGNYFDENGFCTVGGDVV-PLAMVKPKSVS 178 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + ++ P P PL T + G+LE S NS+ EM MI + + + LI Sbjct: 179 DLAKYGDNAFFPLAPVEPLALEERQT-RAGYLEGSGVNSITEMMTMIEAQRAYEANVNLI 237 Query: 228 DENEKSMLEAIRNI 241 +++ + I + Sbjct: 238 KNHDEMLGNLISRV 251 >gi|295097202|emb|CBK86292.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 245 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 13/244 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+A A R + ++NM+N+ T GFR F V ++ + + VA Sbjct: 1 MDRAIYTALSAANAALNRQAVTSNNMANSATAGFRAQLAAFRAV--PVEGQTLKTRALVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 Y +G TG LD AL + W A+ P G TR+G ++ DG+L G Sbjct: 59 ESTPYNDDTMGPITHTGRSLDVALPQNGWLAVALPDGSEGYTRNGGIEIDRDGAL--QVG 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 P++ P+ +P + + E G +S G V+ L V+ + Sbjct: 117 GKPLMGD-GAPLVVPPHSQ-ITIAEDGTVSALGAGDEPTAVVPVGRLKMVNAPMSTLIHG 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + G+ L + + LE SN + + M +MI + F +I +++ Sbjct: 175 DDGLFRPAAGNALPQDDAMRLSPESLEGSNVSPVKAMTEMIATARSFEMNMKVIRTADEN 234 Query: 234 MLEA 237 +A Sbjct: 235 AQKA 238 >gi|325288806|ref|YP_004264987.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964207|gb|ADY54986.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 257 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 100/259 (38%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAI--------- 48 M A LA Q+ T+ N+ N T G+R F ++ Sbjct: 1 MIRGLYTAAAGMLANNQQSDTIDQNIENLKTPGYRQASEKLQAFPAMLVERMEPSSTEPV 60 Query: 49 ---KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 + I + V G TG + D A+ +FA+ +P G TR G Sbjct: 61 VMERTPIGSLGTGVQIESVMYQDGPGMLRETGNQTDVAITARGYFAVSTPDGERYTRSGH 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSV 163 F + G L + SG PVL IP+ F + E G + + + + L + Sbjct: 121 FLLDSAGGLRTPSGC-PVLGQNGPVGPIPEN---FEIREDGTMINKEDNMEVDRLRLVDI 176 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 ++ R ++ + + V +K+G++E+SN N ++ +M+ + + +++ Sbjct: 177 P-TEALQREGDTLLFSSSEGVVDIPAGEVRLKQGYVEESNVNLNAQIVKMLEVVRSYSAN 235 Query: 224 TTLIDENEKSMLEAIRNIA 242 ++ N+ + +A+ I Sbjct: 236 QKVVQTNDSLLQKAVNEIG 254 >gi|297531534|ref|YP_003672809.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] gi|297254786|gb|ADI28232.1| fagellar hook-basal body protein [Geobacillus sp. C56-T3] Length = 273 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 33/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S AL++RL T++ N++N++TVGF+ + F+E++ + + Sbjct: 1 MLRSMLTAANTMNALQERLDTISHNIANSNTVGFKRREASFAELLTQQIDRLPNDEAPRQ 60 Query: 56 -------ISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-----IILTR 102 + L + G+ + TG LDFAL + WF + I TR Sbjct: 61 TPEGVRYGNGARLASTMLITKQGALVETGRRLDFALTAENQWFRVRLADQNGAETIGYTR 120 Query: 103 DGRFKV---TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIA 156 G F + + +L ++ G + VLD + PI +P V G ++ G+V+A Sbjct: 121 AGNFSLAPMNGELALTTSDGLF-VLDERNAPIVLPADAHDVQVSPTGTLTATNADGRVVA 179 Query: 157 T--MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYE 209 +G+ + Q R + + P E+L+G ++VK+G LE SN + E Sbjct: 180 RVNLGVTVIRRPQLLEARGGNVYALPNVPGAAEELNGNLRGQISVKQGALEQSNVDLGEE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 M ++ ++ + I +E+ ML I + S Sbjct: 240 MVGLMATSRAYQLNARAISISEQ-MLGLINGMRS 272 >gi|254499121|ref|ZP_05111811.1| putative flagellar basal body rod protein [Legionella drancourtii LLAP12] gi|254351660|gb|EET10505.1| putative flagellar basal body rod protein [Legionella drancourtii LLAP12] Length = 237 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 M + A + +L +++ N+SN +T GF+ ++ F + A N + Q++ Sbjct: 1 MFDAITATQLAMDYDQLKLQSISQNISNMNTPGFKRQLIENAGFDMHLQANVNQVAQQL- 59 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 ++ K G T D AL G+ +F ++ +GI TR G F+V + G L +A Sbjct: 60 -----EQSHLKAQGLINQTKNPTDLALCGEGYFQVQGEQGIFYTRRGDFQVNNQGELTTA 114 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 +G+ VL I D F V +G + + + + Q N Sbjct: 115 TGE-TVLGKGG---VIKVDDHAFTVDAQGALFIDHHKVDQLNIVQFKQPQLLRYSGNGLY 170 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + P P+ + V +GF+E SN S+ EM M+ ++ F + ++ + + A Sbjct: 171 QCDDSPIPV--GANTQVHQGFIEQSNVKSIDEMMDMVKTSRHFEANQRIMRTADNLLATA 228 Query: 238 IRNIA 242 I + Sbjct: 229 INQLG 233 >gi|209886824|ref|YP_002290681.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5] gi|209875020|gb|ACI94816.1| flagellar basal body rod protein [Oligotropha carboxidovorans OM5] Length = 243 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 6/224 (2%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--FVASGKE 64 IGLAA +AL + + +VA+N++N T F+ +V+F E + + ++ + S Sbjct: 7 IGLAALIALRRHVDSVANNVANLTTPAFKAGRVQFKEYLTEAEEADSPAMAKRSLVSTSH 66 Query: 65 YLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + VG +TG LD AL + DA+F +++P G TR G F + DG L + GK PV Sbjct: 67 FTDFSVGGMRTTGNPLDVALTDDDAFFVVDTPGGPRYTRSGAFTLNADGKLATIDGK-PV 125 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 L + + +D + G IS + IA + L + S P Sbjct: 126 LTSIGH-LVVQPRDGPVTIAGDGSISTRQGRIAGLRLVRFADRREVKPEGGGLFSAAHSP 184 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + +G + G LE SN EM ++I + + ++T ++ Sbjct: 185 LEVPSGAG-RLAIGVLETSNVREADEMSRLIAASNAYETLTKVV 227 >gi|254520946|ref|ZP_05133001.1| flagellar basal-body rod protein FlgF [Stenotrophomonas sp. SKA14] gi|219718537|gb|EED37062.1| flagellar basal-body rod protein FlgF [Stenotrophomonas sp. SKA14] Length = 249 Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 12/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q T++ N++N+DT GF+ I+ Sbjct: 1 MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAF--PIRGPGFASRVDAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ G+ TG LD AL+ W A++S G TR VT +G LV++SG Sbjct: 59 HVDAGFNRRPGAQHITGKPLDLALQTGTWLAVQSTDGSEAYTRGAALSVTPNGQLVTSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRE 173 + PVLD + PI IP + +G G IS + + +A +G + V + R Sbjct: 119 R-PVLDDNNNPIAIPPY-QAMEIGADGTISIIPQGEGPQTMAQVGRIKVVQAPDERLERG 176 Query: 174 NSGISPNIPPT-PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ N P P G V G LE SN ++ + QMI L +++ +I + Sbjct: 177 LDGLFRNTDPQQPFAPAQGTAVHSGQLEGSNVDAAGALVQMIQLQRQYEMQVQVIKHGDD 236 Query: 233 SMLEA 237 + A Sbjct: 237 NARSA 241 >gi|119469951|ref|ZP_01612756.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Alteromonadales bacterium TW-7] gi|119446661|gb|EAW27934.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Alteromonadales bacterium TW-7] Length = 247 Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 11/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + Q L+ A+N++N +T GF++ + + A + ++ F Sbjct: 1 MDKMVYIAASGAKQSLQGLALKANNLANANTTGFKSDFAQARSM-QAFGEGLPSRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG +LD A+ +AW +++ G T+ G +T +G L+++ G Sbjct: 59 QERPGSNMTSGGIVETGRDLDIAMSDNAWLSVQDASGNEAYTKVGTLNITAEGMLMTSHG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM------SQGFVRRE 173 + V+ P+ +P E E G I + + L VD + + + Sbjct: 119 R-QVIGEGG-PVILPVPIEKIEFSEDGAIQVRPQGAPATFLEEVDRLKVVEANSFQLEKG 176 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 N G+ ++ + V V G LE SN N ++EM MI ++F L+ E Sbjct: 177 NDGLFRPKAGEVVDTSANVKVLSGTLEMSNVNPVHEMVDMISHQRQFELQVKLMKTAED 235 >gi|222824020|ref|YP_002575594.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] gi|222539242|gb|ACM64343.1| flagellar distal rod protein FlgG [Campylobacter lari RM2100] Length = 269 Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 28/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ + A + RL V +N++N +T G++ V ++ I+N Sbjct: 1 MQNGYYQATGAMVTQFNRLDVVTNNLANVNTSGYKRDNVVIADFKRIFKETQDELPIQNH 60 Query: 52 IDQKISFVASGKE--------YLSKEVGSFISTGTELDFALE-GDAWFALESPRG-IILT 101 FV + + Y + VGS T LD AL D ++ +++ G I LT Sbjct: 61 TRDAARFVNTTIDRVPQVNHVYTNFSVGSMKMTHNPLDLALTREDTFYLIKTNNGEIRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 +DG F++ ++G LV+ G Y VL + + I+I NV + G +S + I Sbjct: 121 QDGNFQLDEEGYLVNRQG-YRVLSSDYFNNPENDGIRIGNSTSFINVDKNGIVSASNQNI 179 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + + VD + + ++ ++ S +++GF + SN N + EM +I Sbjct: 180 ARLFVAQVDDLRDLQKDGDNMYKVDLNKVRDLPNSNA-IRQGFTQGSNVNPVTEMVGLIE 238 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +AS Sbjct: 239 ANRMVEMYQKVMTSHMDDLNQEAINKLAS 267 >gi|270262400|ref|ZP_06190671.1| flagellar basal-body rod protein FlgF [Serratia odorifera 4Rx13] gi|270043084|gb|EFA16177.1| flagellar basal-body rod protein FlgF [Serratia odorifera 4Rx13] Length = 251 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 97/250 (38%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ S A+N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAARQTLEQQSVTANNLANASTPGFRAQLSALRAV--PVDGPSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T LD AL+ D + A+ P G TR+G +++ G L + G Sbjct: 59 ASTPGADMSQGALNYTARPLDVALQQDGFLAVSLPDGGEAYTRNGNIQISSAGQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 + P++ PI++P E + G IS IA +G L V + V R Sbjct: 118 R-PLMGDGG-PIEVPPSAE-ITIAADGTISALNAGDPPNTIAQIGRLKLVKANAREVMRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L++ V V G LE SN M M MI ++F +I Sbjct: 175 DDGLFRLTPETQQQRGNQLQNDPLVRVMPGVLEGSNVKPMETMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 +++ A Sbjct: 235 HSVDENEQRA 244 >gi|254779049|ref|YP_003057154.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Helicobacter pylori B38] gi|254000960|emb|CAX28904.1| Flagellar basal-body rod protein FlgG (Distal rod protein) [Helicobacter pylori B38] Length = 269 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + L+ + +P D V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMP--DAEIEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + SG +K+ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYIYQGEGVHQVSDSGA-LKQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|317181698|dbj|BAJ59482.1| flagellar basal-body rod protein [Helicobacter pylori F57] Length = 269 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + L+ + +P V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMPNAG--IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|157692308|ref|YP_001486770.1| flagellar basal body rod protein FlgG [Bacillus pumilus SAFR-032] gi|157681066|gb|ABV62210.1| flagellar basal body rod protein [Bacillus pumilus SAFR-032] Length = 263 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 25/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ + +L VA+N++N +T G++ ++ F ++V G N Sbjct: 1 MLRSLYSGISGMKNFQSKLDVVANNVANVNTHGYKKSRITFKDMVSQTIGSSGGPTNNSG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S GS +T DF + GD +F +ES ++ TR G F Sbjct: 61 SINSKQIGLGSSLSSIDKIMSAGSSQNTNEPYDFYINGDGFFRIESQGEVLYTRTGNFDT 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVD 164 +GSLV+ G Y +L M I IP +VG G IS + + + L S Sbjct: 121 DSEGSLVTPDGNY-LLGMNGQKITIPDGVSSVSVGPDGTISVVENNVSRTVGQISLVSFR 179 Query: 165 MSQGFVRRENSGI-------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + G + ++ +P+ P P E +GV ++ G LE SN + E +MI Sbjct: 180 NAGGLDKVGDNLYRQTLSSGAPSNPIVPGEQGTGV-IQTGKLEMSNVDLTDEFTEMIIAQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F S I +++ + E + Sbjct: 239 RGFQSNAKTITTSDEILQELVN 260 >gi|317013797|gb|ADU81233.1| flagellar basal-body rod protein [Helicobacter pylori Gambia94/24] Length = 269 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQEYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + L+ + +P D V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFKVLSRSGLNEKGGIMLMP--DAEIEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGIHQVSDSGA-LRQSMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|190574262|ref|YP_001972107.1| flagellar basal body rod protein FlgF [Stenotrophomonas maltophilia K279a] gi|190012184|emb|CAQ45807.1| putative flagellar basal-body rod protein [Stenotrophomonas maltophilia K279a] Length = 249 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 12/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q T++ N++N+DT GF+ IK Sbjct: 1 MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAF--PIKGPGFASRVDAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ GS TG LD +L+ W A++S G TR VT +G LV++SG Sbjct: 59 HVDAGFNRTPGSQHITGKPLDLSLQTGTWLAVQSSDGSEAYTRGAALSVTPNGQLVTSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRE 173 + PVLD + PI IP + +G G IS + + +A +G + V + R Sbjct: 119 R-PVLDDNNNPIAIPPY-QAMEIGADGTISIIPQGEGPQTMAQIGRIKVVQAPDERLERG 176 Query: 174 NSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ N P P G V G LE SN ++ + QMI L +++ +I ++ Sbjct: 177 LDGLFRNTDPRQPFAPAQGTAVHSGQLEGSNVDAAGALVQMIQLQRQYEMQVQVIKHGDE 236 Query: 233 SMLEA 237 + A Sbjct: 237 NARSA 241 >gi|171321214|ref|ZP_02910184.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] gi|171093524|gb|EDT38694.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] Length = 234 Score = 184 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 10/242 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L QR T A N+SN T G+R F +++ ND+ Sbjct: 1 MDDLMTLSLRLISLETQRAETAARNLSNVATPGYRREIA-FQDMLA---NDVTPAGGGPP 56 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G + TG D A++GD +F +++ G TR G F DG LV+ +G Sbjct: 57 I-HRLTDFSPGRLVRTGDPFDLAIDGDGFFQVQTDSGPAYTRTGAFLRAADGRLVTRAGG 115 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +P+ I + + V G + G + + + + D R + +P Sbjct: 116 WPLQGAHGD-IVVSLDG--WRVDADGTVLDHGVPTSVIRVATFDAPSRLQRIADGLYAPR 172 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 T + + +GF+E SN ++ +M ++I ++ + L+ + M ++ Sbjct: 173 D--TVGMRDAPTRLAQGFVETSNVSAADDMVRLIEAMRRVETGQKLVHAYDDLMGSVLQR 230 Query: 241 IA 242 + Sbjct: 231 LG 232 >gi|88811802|ref|ZP_01127056.1| hypothetical protein NB231_05335 [Nitrococcus mobilis Nb-231] gi|88791193|gb|EAR22306.1| hypothetical protein NB231_05335 [Nitrococcus mobilis Nb-231] Length = 246 Score = 184 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 15/249 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + + N++N +T GFR + + + Sbjct: 1 MDRYLYIAMTGAKHALKAQQVNNHNLANANTPGFRADLDAL--LSRPVAGPGYPSRVYSV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 S G I+TG LD AL G W A+++ G TR G ++T G L + +G Sbjct: 59 ETALGSSFAPGHLITTGRSLDVALNGAGWLAVQARDGTEAYTRRGDLRITAGGLLQTGAG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRE 173 + VL P+ IP + ++G+ G I+ L V+ +R+ Sbjct: 119 QL-VLGNGG-PVAIPP-AKQVSIGQDGTITVIPIGQPDNAPAVVDRLRLVNPPSAALRKG 175 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID---EN 230 G+ T +GV+V G LE SN N++ + MI ++F + L++ N Sbjct: 176 EDGLFRLEGGTAATADAGVSVVSGALESSNVNTVDALVNMIGNARRFEAYVKLMESAKSN 235 Query: 231 EKSMLEAIR 239 +++ +R Sbjct: 236 DETGQRLLR 244 >gi|121534935|ref|ZP_01666754.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] gi|121306534|gb|EAX47457.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] Length = 247 Score = 184 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 99/251 (39%), Gaps = 15/251 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + LA R A+N++N +T G++ + G + + I+ Sbjct: 1 MIRGIYTAASGMLAEAIRADVTANNLANANTAGYKKDVALSRDFAGILISRINDGPDAPV 60 Query: 61 SGK---------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 G G STG LD A++G +F + +P G+ TR+G F + Sbjct: 61 IGSLGLGAVVDNVATIHTAGMMRSTGNALDLAIDGRGFFVVATPAGLRYTRNGAFTRNSE 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G LV+ +G Y V+ A P+++ + + G + + + + + V+ Sbjct: 121 GELVTQAG-YRVMGQAG-PVRLNSGAK-VTIDADGRVFVDEVEVDRLQVVDFPDQRALVK 177 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 +S + V++G LE +N N + EM +I + + ++ ++ Sbjct: 178 EGDSLFAAPGAAPQAGSG---QVRQGVLELANVNVVAEMVNLIAGYRAYEINAKMVQTHD 234 Query: 232 KSMLEAIRNIA 242 + + +A+ + Sbjct: 235 QLLDKAVNEVG 245 >gi|23012978|ref|ZP_00052943.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 213 Score = 184 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 11/215 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQK 55 M + IGL+ QLALE+ + A+N++N T GF++ +F E + D++ Sbjct: 1 MNNTLLIGLSHQLALERAMEVAANNVANVTTTGFKSRSAEFREYLMPGARVEAARPSDRR 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSL 114 +S+V L VG TG+ LD AL + +A+FA+++ G TR+G F++ G L Sbjct: 61 LSYVVDAATPLDLSVGQIERTGSPLDVALRDENAFFAVQTSGGERYTRNGAFQLNAAGDL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V++ G Y VL A PI + ++G G IS + + L + V Sbjct: 121 VTSDG-YTVLGTAG-PILFAKNTREISIGTDGTISTEQGPSGKLRLVQFADPERLVSAGG 178 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 + TP ++ G LE SN N E Sbjct: 179 NLYQ---SSTPPRGAPASRLEVGSLERSNVNPFTE 210 >gi|307637047|gb|ADN79497.1| flagellar basal-body rod protein [Helicobacter pylori 908] gi|325995639|gb|ADZ51044.1| Flagellar basal-body rod protein [Helicobacter pylori 2018] gi|325997235|gb|ADZ49443.1| Flagellar basal-body rod protein [Helicobacter pylori 2017] Length = 269 Score = 184 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQEYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + VL + I + E V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FKVLSRSGLNEKGGIMLMPNAE-IEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGIHQVSDSGA-LRQSMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|194365679|ref|YP_002028289.1| flagellar basal body rod protein FlgF [Stenotrophomonas maltophilia R551-3] gi|194348483|gb|ACF51606.1| flagellar basal-body rod protein FlgF [Stenotrophomonas maltophilia R551-3] Length = 249 Score = 184 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 12/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q T++ N++N+DT GF+ I+ Sbjct: 1 MDKALYVAMTGARASLQAQGTLSHNLANSDTPGFKEALANTEAF--PIRGPGFASRVDAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ GS TG LD +L+ W A++S G TR VT +G LV++SG Sbjct: 59 HVDAGFNRTPGSQHITGKPLDLSLQTGTWLAVQSSDGSEAYTRGAALSVTPNGQLVTSSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRE 173 + PVLD + PI IP + +G G IS + + +A +G + V + R Sbjct: 119 R-PVLDDNNNPIAIPPY-QAMEIGADGTISIIPQGEGPQTMAQIGRIKVVQAPDERLERG 176 Query: 174 NSGISPNIPP-TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ N P P G V G LE SN ++ + QMI L +++ +I ++ Sbjct: 177 LDGLFRNTDPLQPFAPAQGTAVHSGQLEGSNVDAAGALVQMIQLQRQYEMQVQVIKHGDE 236 Query: 233 SMLEA 237 + A Sbjct: 237 NARSA 241 >gi|307293786|ref|ZP_07573630.1| flagellar basal-body rod protein FlgF [Sphingobium chlorophenolicum L-1] gi|306879937|gb|EFN11154.1| flagellar basal-body rod protein FlgF [Sphingobium chlorophenolicum L-1] Length = 246 Score = 184 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 16/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N L A R + +++N++N +T GFR IK D + + Sbjct: 1 MDRLVNTALTAMRGAMARQAAISNNLANVNTTGFRAEIANAET--RWIKGDNLNTRAQAS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ GDA A+++P G TR G KV+D G L + G Sbjct: 59 EQVVAADMAQGAVTETGNPLDVAMNGDAMLAVQAPDGGEAYTRRGDLKVSDSGLLTTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 VL PI +PQ D ++ G I + + + L S S + Sbjct: 119 -LVVLGEGG-PITLPQMDS-ISIARDGSIWGVPQGGDPANPQQVDKLKLVSPVGSS--IA 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ + L D +V G LE SN N+ + QMI ++ + + +ID + Sbjct: 174 KGTDGLFREVNGGALPDDPLASVTGGSLEGSNVNATSALVQMIEASRAWETQVKMIDTAK 233 Query: 232 K 232 + Sbjct: 234 Q 234 >gi|297379576|gb|ADI34463.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori v225d] Length = 269 Score = 184 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + GEI+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGEITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + + + +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGV-HQISNSSALRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAA 267 >gi|118474276|ref|YP_891712.1| flagellar basal-body rod protein [Campylobacter fetus subsp. fetus 82-40] gi|118413502|gb|ABK81922.1| flagellar basal-body rod protein [Campylobacter fetus subsp. fetus 82-40] Length = 270 Score = 184 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 108/269 (40%), Gaps = 28/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---------VGAIKND 51 MQ + A + RL + +N++N +T+G++ V ++ + ++N Sbjct: 1 MQNGYYQATGAMVTQFNRLDVITNNLANVNTIGYKRDDVVIADFERIFKETRDILPLENH 60 Query: 52 IDQKISFV--------ASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTR 102 F+ + Y VG T LD A+ + D + +++P G+ LT+ Sbjct: 61 TRDAAKFLNRTIDRVPQINEIYTDFNVGGLKMTNNPLDVAIGKSDLFLLVDTPNGVRLTK 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMA--SVP-----IQIPQKDEIFNVGEKGEISQKGKVI 155 +G + ++G +V+ G Y VL + P IQIPQ + + G I + + Sbjct: 121 NGALNLDNEGYIVTKEG-YRVLPNNYENQPEEVRGIQIPQDA-PVTIDKDGNIYSNNENV 178 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + + + ++ + + +V +G+ + SN N + EM ++ Sbjct: 179 GRFFIAQPREIRNLQKEGDNLFVLPNLNELNDVENSGSVAQGYSQISNVNPVIEMVNLVE 238 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + ++ + + EAI +AS Sbjct: 239 TNRLVDMYQRVMSTHMNDINQEAITKLAS 267 >gi|269836597|ref|YP_003318825.1| hypothetical protein Sthe_0565 [Sphaerobacter thermophilus DSM 20745] gi|269785860|gb|ACZ38003.1| protein of unknown function DUF1078 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 259 Score = 184 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKND 51 M + + G + RL VA+N++N T GF+ +V ++ G + Sbjct: 1 MTSLYATGANGLRVQQARLDAVANNVANLGTTGFKAARVDMVDMPPQPLEVARAGGAADP 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKVT 109 + + V G E G+ TG LD A+ G + +F L +P G + TRDG+F+ Sbjct: 61 VTEIGEGVTIGGISRVFEPGTPRPTGNPLDVAILGPNTFFVLTTPDGQTLYTRDGQFRPD 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 G LV+ +G D S PI +P + V +G I + + L Sbjct: 121 STGQLVTPAG-----DRLSPPITLPPGASVTEVTPEGRILATLPGEVNPVEVGRITLARF 175 Query: 164 DMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 QG + + + P + ++ G LE S + +M +I + Sbjct: 176 ANPQGLAAAGQNRFAATVASGPPQVGTPGADGFPALQSGALEASTVDLAEQMTTLIEAQR 235 Query: 219 KFNSITTLIDENEKSMLEAIR 239 + + ++ + AI+ Sbjct: 236 AYTVNARALQTLDEMVGLAIQ 256 >gi|15611401|ref|NP_223052.1| flagellar basal-body rod protein [Helicobacter pylori J99] gi|4154843|gb|AAD05896.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99] Length = 269 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQEYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTNNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + VL + I + E V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FKVLSRSGLNEKGGIMLMPNAE-IEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSDSGA-LRQSMLEKSNVNAVREMSTLI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|325509555|gb|ADZ21191.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum EA 2018] Length = 258 Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 101/262 (38%), Gaps = 26/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 M ++ + E + + +N++NT+TVGF++ + F +V+ + + + Sbjct: 1 MVRGLYTAISGMVVQEAKQDVITNNLANTNTVGFKSDSLSSQSFEDVLIQNYSKRENGVP 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDG 104 G+ +T + DFA++G +F + G TR+G Sbjct: 61 ERTLLGTLNLGSRINDTATDFTGGNIQATDIDTDFAIQGRGFFTVRKNNGSDQNYYTRNG 120 Query: 105 RFKVTDDGSLVSASGKY----PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 F V DG ++ SG Y + + PI++ + G +S G+ Sbjct: 121 HFHVNMDGYMLDDSGDYIMGTNLATNTTEPIKL--GKGSVSCDPYGNVSVDGQAKYKFNF 178 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + ++ + P+++ +V+ LE SN N M M M+ + F Sbjct: 179 VDFNDYTKLKKIGDNLFQGD---NPIQNF-NASVENKALEGSNVNVMKGMTDMMTTMRVF 234 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 S + ++++ +A+ + Sbjct: 235 ESNQKTVQSIDETVGKAVNEVG 256 >gi|84502378|ref|ZP_01000514.1| putative flagellar basal-body rod protein flgF [Oceanicola batsensis HTCC2597] gi|84389190|gb|EAQ01987.1| putative flagellar basal-body rod protein flgF [Oceanicola batsensis HTCC2597] Length = 250 Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 117/247 (47%), Gaps = 5/247 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-IDQKISFV 59 M + + L+ A+++ L A+N++N +T GF+ ++ F+ + + + + +FV Sbjct: 1 MDNTTYVALSLARAMKRDLDVTANNIANANTAGFKAERIIFASYLHQDEGQRVGEGTNFV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 YL K G+ T LD A++G+A+ + P G RDG+ + DG LV+ S Sbjct: 61 VDQGSYLDKTQGAMTRTDNPLDLAIKGEAFLSYRMPGGQTAYGRDGQLALDRDGYLVTLS 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G VLD I IP + G I S + V+ +GL+ + Q ++R NS + Sbjct: 121 GA-RVLDEGGGDIAIPPGAGKILISPDGTIASDETGVLGRVGLFDLPDVQSYIRLGNSML 179 Query: 178 SPNIP-PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P G + +G +E SN + + E+ +++ + + ++ T L+ ++ + Sbjct: 180 VPPEGREGQATAAEGSEILQGQIELSNVSPVAEVTRLMMIQKAYDRATKLMSTEDELRKD 239 Query: 237 AIRNIAS 243 +R + S Sbjct: 240 MLRRLGS 246 >gi|308182526|ref|YP_003926653.1| flagellar basal-body rod protein [Helicobacter pylori PeCan4] gi|308064711|gb|ADO06603.1| flagellar basal-body rod protein [Helicobacter pylori PeCan4] Length = 269 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + L+ + +P D V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMP--DAEIEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQISDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 GINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|317008999|gb|ADU79579.1| flagellar basal-body rod protein [Helicobacter pylori India7] Length = 269 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 30/269 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + L+ + +P D V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNGFRVLSRSGLNEKGGIMLMP--DAEIEVNQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +K+ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSDSGA-LKQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIA 242 + + + + ++ ++ M EAI +A Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLA 266 >gi|187478186|ref|YP_786210.1| flagellar basal body rod protein FlgF [Bordetella avium 197N] gi|115422772|emb|CAJ49300.1| flagellar basal-body rod protein [Bordetella avium 197N] Length = 255 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + S +++N++N T GFR + V + +++ A Sbjct: 1 MDRVIYTAMNGAARTAEHQSVLSNNLANVSTPGFREQLAMYRSVPVNDGTSLPTRVATAA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + +G STG ELD AL G WFA+++P+G TR G +V +G L +A+G Sbjct: 61 T-TPGSNFAMGVMQSTGRELDVALSSGQGWFAIQTPQGEAYTRAGSLQVGVNGLLQTAAG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRE 173 + PVL +V I IP + + G I+ G V+ L V+ Q + R Sbjct: 120 Q-PVLSDQNVLIDIPDQAA-LTIASDGTITALGAGDPPNNVLNMGRLKMVNAPQSQLLRG 177 Query: 174 NSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P PL G + G +E SN ++ M MI ++F ++ Sbjct: 178 DDGLFRMPAQANGQPAAPLPADPGQRLIAGVVEGSNVSASGAMVAMIENARRFEMQMQVV 237 Query: 228 DENEKSMLEA 237 E ++ A Sbjct: 238 SEANRNAERA 247 >gi|297585403|ref|YP_003701183.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297143860|gb|ADI00618.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 277 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 40/278 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKND------ 51 M A ++ ++ +++N++N +T GF+ + F ++ Sbjct: 1 MLRGLYTAGAGMISQQRNQEMLSNNIANVNTPGFKADQGSLRTFPNMLIQAMGTDHQFPG 60 Query: 52 -----IDQKISFVASGKEYLSKEVGSFISTGTELDFAL-EGD----------AW--FALE 93 I + + V + + G + T D AL +G+ F ++ Sbjct: 61 RRSPVIGELSTGVYMQERTPNFRQGDLMETTNSTDIALLQGETPMDEDSGLPGMLAFQIQ 120 Query: 94 SPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 + G I TR+G F V DG L +G Y VLD PI++ +E F V + GEI Sbjct: 121 NDDGDIRYTRNGDFTVDSDGFLTMGTGHY-VLDTDGAPIEV--GNEDFRVNQNGEIFTDD 177 Query: 153 K---VIATMGLYSVDMSQGFVRRENSGI-----SPNIPPTPLEDLSGVTVKRGFLEDSNA 204 + + + + G + +E SG I D +++G+LE SN Sbjct: 178 ADEVFLGQIDIMLIPDP-GLLVKEGSGFLRYDGDEAIASAIGNDDVLYQLQQGYLERSNV 236 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 ++ M QM+ + F + ++ ++S+ A+ +I Sbjct: 237 DAGQTMTQMMAALRNFEANQKVLQAYDQSLERAVNDIG 274 >gi|224417700|ref|ZP_03655706.1| flagellar basal-body rod protein FlgG [Helicobacter canadensis MIT 98-5491] gi|253827049|ref|ZP_04869934.1| flagellar distal rod protein FlgF [Helicobacter canadensis MIT 98-5491] gi|313141243|ref|ZP_07803436.1| flagellar basal-body rod protein flgg [Helicobacter canadensis MIT 98-5491] gi|253510455|gb|EES89114.1| flagellar distal rod protein FlgF [Helicobacter canadensis MIT 98-5491] gi|313130274|gb|EFR47891.1| flagellar basal-body rod protein flgg [Helicobacter canadensis MIT 98-5491] Length = 277 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 38/278 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ + + + RL +A+N++N +T GF+ V + + IK+ Sbjct: 1 MQGGYYSSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIKDQ 60 Query: 52 IDQKISF--------VASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTR 102 F +E+ + VG T DFAL +A+F +E+P GI TR Sbjct: 61 TKDAAKFYNRSLNRVPQIVEEFTDRSVGGITQTDNTFDFALSRENAYFMIETPEGIRFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI-----FNVGEKGEIS-------- 149 DG F + +G LV+ G Y VL I+ PQ EI V + G + Sbjct: 121 DGSFVLNQEGRLVNKEG-YAVLPREY--IESPQYIEIIDGFQIEVDKDGNLYNRSLNNEE 177 Query: 150 -QKGKVIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLS-GVTVKRGFLEDSNANS 206 + + A + + S + + + ++ PN +E L V++G+LE SN N Sbjct: 178 LNETILTANIAVVSFENPKFLQKIGDNLYKYPNERMNEMEVLERSGAVRQGYLEKSNINV 237 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 +YEM +I + + + ++ + + EAI IA+ Sbjct: 238 VYEMTGLIETNRLVEAYSKVLKTHMDDLNTEAITRIAA 275 >gi|317012196|gb|ADU82804.1| flagellar basal-body rod protein [Helicobacter pylori Lithuania75] Length = 269 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEGTHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + VL + I + E V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FKVLSRSGLNEKGGIMLMPDAE-IEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +K+ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSNSGA-LKQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|317010632|gb|ADU84379.1| flagellar basal-body rod protein [Helicobacter pylori SouthAfrica7] Length = 269 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAVAGAMATQFNRLDLTSNNLANLNTNGFKRDDTITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y K +G+F T LDFAL + +FA+++ GI TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDKSLGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEIS----QKGKV 154 DG F V DG LV+ +G + VL + I + E V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FKVLSRSGLNEQGGIMLMPNAE-IEVDQNGGITFRDNEAPIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYAYQGEGIHQVSDSGA-LRQYMLEKSNVNAVREMSTLI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|168180937|ref|ZP_02615601.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] gi|182668349|gb|EDT80328.1| flagellar basal body rod protein [Clostridium botulinum NCTC 2916] Length = 255 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 110/259 (42%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---SEVVGAIKN------D 51 M S ++ ++LE + T++ N+SN TVG+++ + F +V+ + + Sbjct: 1 MIRSLYTAVSGMISLEAKQDTISANLSNASTVGYKSTNLAFKKFEDVLMENYDKKLGNKN 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I I ++ G + G TG DFALEG +F +E+ TRDG F Sbjct: 61 IQNIIGGLSMGNKIDEVNNLFTQGIIQDTGKPTDFALEGRGFFTIENNGRNYYTRDGHFH 120 Query: 108 VTDDGSLVSASGKYPVLDMA---SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V G LV+ SG Y V+ + I ++ G I G + + + Sbjct: 121 VDTRGYLVNDSG-YNVMGINRNTGAREAIFVGNKTIGTDASGNIILNGVPSYSFQVADFN 179 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ N P ++++G+ V++ LE SN N EM M+ + F + Sbjct: 180 DYNSLKKIGDNLFEGNNP----QNINGI-VRQNSLEKSNVNVTNEMVTMLTTMRSFETNQ 234 Query: 225 TLIDENEKSMLEAIRNIAS 243 ++ ++++ + + + + Sbjct: 235 KIVQSIDETLGKTVNEVGA 253 >gi|294635611|ref|ZP_06714088.1| flagellar basal-body rod protein FlgF [Edwardsiella tarda ATCC 23685] gi|291091063|gb|EFE23624.1| flagellar basal-body rod protein FlgF [Edwardsiella tarda ATCC 23685] Length = 251 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+NM+N+ T GFR V + + + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAIAANNMANSTTPGFRAQLAALRAV--PVDGESLETRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + +G T LD AL+ D W A++ P G TR+G ++ G L +A G Sbjct: 59 ASTPMHDLSMGKLDYTERPLDVALQQDGWLAVQMPDGSEAYTRNGSLQINPQGML-TAQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + D PI +P + + + G I+ G I + L S V Sbjct: 118 HLVMGDNG--PIAVPDRAQ-LTIAADGTITALGAGDKPNATTQIGRLKLVKA--SAQEVV 172 Query: 172 RENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + G+ P L + V G LE SN + M MI ++F Sbjct: 173 HGDDGLFHLTPEAEQQRGAQLPLDPTLKVMPGVLEGSNVQPVEAMVNMITNARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + +A Sbjct: 233 VIRSVDDNEQKA 244 >gi|257871297|ref|ZP_05650950.1| flagellar hook protein [Enterococcus gallinarum EG2] gi|257805461|gb|EEV34283.1| flagellar hook protein [Enterococcus gallinarum EG2] Length = 312 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 113/296 (38%), Gaps = 58/296 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ L+ ++ V++N++N +TVGF++ +V F +++ ++ + Sbjct: 15 MLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLG 74 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGR 105 V +G VG+ STG +DF + G +F ++ P TRDG Sbjct: 75 GINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGA 134 Query: 106 FKVTDDGSLVSASGKYPVLD---MASVPIQIPQK-------------------------- 136 F +G+L ++ G VL P+ Sbjct: 135 FVRDSNGTLTNSDG-MQVLGRSVTGGQPVVYDDNFDENTALSGQETVSPLSIPSTLTVNG 193 Query: 137 ----DEIFNVGEKGEISQKGK----VIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLE 187 + G + K V+ +G+ + + +G + N+ + + P+ Sbjct: 194 ETLTYNSMAIDANGLVLAKYGNQTFVMGKVGVATFNNPEGLEKVGGNNYVQTSNSGNPIV 253 Query: 188 DLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T++ G LE SN + E +MI ++ + + + I +++ + E + Sbjct: 254 AGPGNNGAGTLQAGALEMSNVDLSTEFTEMIIASRAYQANSRSITTSDEMLQELLN 309 >gi|92114097|ref|YP_574025.1| flagellar basal-body rod FlgF [Chromohalobacter salexigens DSM 3043] gi|91797187|gb|ABE59326.1| Flagellar basal-body rod FlgF [Chromohalobacter salexigens DSM 3043] Length = 253 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 101/252 (40%), Gaps = 22/252 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + Q+ S V N+SN T GFR V + + S VA Sbjct: 1 MDRIIYTAGSGASQAMQQQSVVNHNLSNVSTPGFRAELDAMRAVPVQGDGRLATRTS-VA 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + G +TG LD A++GDA+ A++ P G TR G +V DG L + G Sbjct: 60 ATTSGTDFSPGYMNATGRRLDVAMQGDAFLAIQDPQGGEAYTRRGDLQVDADGML-TVKG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVR 171 + PV+ PI +P E F++G G IS + + + L + D+ + Sbjct: 119 E-PVMGEQG-PIVVPPDAE-FSIGADGSISVLEAGANPDEIAPVGRLKLVTPDLQA--LT 173 Query: 172 RENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G P P ++ G LE SN ++ M MI ++++ Sbjct: 174 RGDDGWFRLPPGDDAEIAAPQPLDEDARLQSGVLEGSNVSATDAMVAMIDGARRYDMQMK 233 Query: 226 LIDENEKSMLEA 237 +I+ +++ A Sbjct: 234 VIESADQNAQRA 245 >gi|299131785|ref|ZP_07024980.1| flagellar basal-body rod protein FlgG [Afipia sp. 1NLS2] gi|298591922|gb|EFI52122.1| flagellar basal-body rod protein FlgG [Afipia sp. 1NLS2] Length = 262 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 91/262 (34%), Gaps = 31/262 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 + A E + +++N++N T G++ F +++ + + S Sbjct: 1 MRALYTAATGMAAQELSVQVISNNIANLRTTGYKKQMASFQDLLYEHVQRVGAQASDQGT 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 V + G+ G +L+ A+ G+ +F ++ P TRDG F Sbjct: 61 VLPVGIDIGGGVKTVGTPRLMTQGTLSPVGGDLNVAVRGEGYFKIQLPDSTYAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGL 160 G +V+A G I IPQ + +G++S V+ + L Sbjct: 121 TTDGQGRIVNAQGNLV-----QPTISIPQNASQLTINAQGQVSVILPGSTTPSVLGQITL 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIH 215 G ++ + P +D +++G LE +N + E+ +I Sbjct: 176 TRFINKAGLQSIGDNLFTDTPASGPPQDGLANADGFGDIQQGNLEQANVEVVSEISDLIA 235 Query: 216 LTQKFNSITTLIDENEKSMLEA 237 + + ++ ++ M Sbjct: 236 AQRAYEMNAKVVSAADQMMQST 257 >gi|163784307|ref|ZP_02179217.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] gi|159880425|gb|EDP74019.1| flagellar hook basal-body protein FlgG [Hydrogenivirga sp. 128-5-R1-1] Length = 238 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 103/235 (43%), Gaps = 10/235 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV-KFSEVVGAIKNDIDQKISFVASGK 63 I + ++L T +N++N +T GF+ + + + S+ + + + F K Sbjct: 8 IYILASGGERALEQLDTTTNNLANVNTPGFKKLLLKEMSQKIPDNQGQSKELFVFPRFEK 67 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + GS T LD A++G+ +F + I LTR+G FK+ G LV + PV Sbjct: 68 TPVVIAQGSLKKTDRPLDLAIDGEGFFQVRFQNQIFLTRNGHFKLDSTGILVDVNSN-PV 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD I++ E + + G I Q +++A + + Q S +P+ Sbjct: 127 LDTQGKVIKLNST-ENVTITKDGSIYQNNELVAKLSIV---NYQSVKPIGESYYAPSSSQ 182 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T + + +GFLE+SN N + M ++I+ ++ L+ + ++I Sbjct: 183 T----NASYEIHQGFLENSNVNPIKAMTELINAQRRMEMYGNLMKALDSVEQKSI 233 >gi|15895409|ref|NP_348758.1| flagellar basal body rod protein FlgG [Clostridium acetobutylicum ATCC 824] gi|15025132|gb|AAK80098.1|AE007715_3 Flagellar basal body rod protein [Clostridium acetobutylicum ATCC 824] Length = 258 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 101/262 (38%), Gaps = 26/262 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKIS 57 M ++ + E + + +N++NT+TVGF++ + F +V+ + + + Sbjct: 1 MVRGLYTAISGMVVQEAKQDVITNNLANTNTVGFKSDSLSSQSFEDVLIQNYSKRENGVP 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDG 104 G+ +T + DFA++G +F + G TR+G Sbjct: 61 ERTLLGTLNLGSRINDTATDFTGGNIQATDIDTDFAIQGRGFFTVRKNNGSDQNYYTRNG 120 Query: 105 RFKVTDDGSLVSASGKY----PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 F V DG ++ SG Y + + PI++ I + G +S G Sbjct: 121 HFHVNMDGYMLDDSGDYIMGTNLATNTTEPIKL--GKGIVSCDPYGNVSVDGPAKYKFNF 178 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + ++ + P+++ +V+ LE SN N M M M+ + F Sbjct: 179 VHFNDYTKLKKIGDNLFQGD---NPIQNF-NASVENKALEGSNVNVMKGMTDMMTTMRVF 234 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 S + ++++ +A+ + Sbjct: 235 ESNQKTVQSIDETVGKAVNEVG 256 >gi|255523679|ref|ZP_05390645.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] gi|255512548|gb|EET88822.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] Length = 264 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 99/263 (37%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M +A A + +L ++++N++N T G++ V F ++V N Sbjct: 1 MLRILWGSKSAMNAQQDKLDSISNNIANESTTGYKREDVSFQDLVYETLNRKGYPNSGDN 60 Query: 56 ------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKV 108 + V + + Y G T ++ DFA++G+ +F + P G R G F + Sbjct: 61 PKEPINGTGVKATQWYRDNTQGPLRQTDSKTDFAIDGEGYFRVTLPNGTKAYERAGSFNI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN-----VGEKGEIS-----QKGKVIATM 158 ++G +V G ++ + F V E GEI + Sbjct: 121 DNNGDIVDKDGNRLDIEFTEEGSNLFNSGTGFTQDNFAVKENGEIYLNVDNSNSVYYGKI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 +Y+ + ++ + N P + V +G LE+SN N EM MI + Sbjct: 181 NVYNPVGQEALSSIGDNLYTAN-PGAQINVAQNSNVLQGKLEESNVNIGKEMTDMIIAQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F + + ++ M + ++ Sbjct: 240 AFELSSKAMKTGDE-MWGLVNSM 261 >gi|188997558|ref|YP_001931809.1| flagellar basal body rod protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932625|gb|ACD67255.1| flagellar basal body rod protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 236 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 13/239 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV-KFSEVVGAIKNDIDQKISFVASGK 63 I + ++L T +N++N++T GF+ + V + S+ + K + + F Sbjct: 8 IYILASGGERATEQLDTTTNNIANSNTPGFKKLLVREMSQKIPENKGKVGDLLVFPRFMD 67 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + G I T LD A+ D +F +ES G TR+G F + +G LV +G Y V Sbjct: 68 SSVLNFQGPLIKTENNLDLAIVRDGFFTVESAIGRYYTRNGHFSINQEGYLVDVNGAY-V 126 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 LD IQI +D F + KGEI Q G++ + + ++ Q NS Sbjct: 127 LDENFRRIQI--QDSKFQITPKGEIYQNGQITGKIRVVNL---QNLQAVGNSYYQ----- 176 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + ++ +K+G+LE +N N + EM +MI+ ++F+ L + + I Sbjct: 177 GQEQQITNFEIKQGYLEGANLNIVKEMVEMINNHRRFDIYMNLAK-YLDMLEGKVNEIG 234 >gi|257866386|ref|ZP_05646039.1| flagellar hook protein [Enterococcus casseliflavus EC30] gi|257873098|ref|ZP_05652751.1| flagellar hook protein [Enterococcus casseliflavus EC10] gi|257875999|ref|ZP_05655652.1| flagellar hook protein [Enterococcus casseliflavus EC20] gi|257800344|gb|EEV29372.1| flagellar hook protein [Enterococcus casseliflavus EC30] gi|257807262|gb|EEV36084.1| flagellar hook protein [Enterococcus casseliflavus EC10] gi|257810165|gb|EEV38985.1| flagellar hook protein [Enterococcus casseliflavus EC20] Length = 312 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 116/295 (39%), Gaps = 56/295 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ L+ ++ V++N++N +TVGF++ +V F +++ ++ + Sbjct: 15 MLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLG 74 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGR 105 V +G VG+ STG +DF + G +F ++ P TRDG Sbjct: 75 GINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGA 134 Query: 106 FKVTDDGSLVSASGKYPV-----------------------LDMASVPIQIPQKDEI--- 139 F +G+L ++ G + A P+ IP + Sbjct: 135 FVRDSNGTLTNSDGMQVLGRSVNGGQPVVYDDNFDENTALSGQDAVSPLSIPSTLTVNGE 194 Query: 140 ------FNVGEKGEISQKGK----VIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLED 188 + G + K V+ +G+ + + +G + N+ I + P+ Sbjct: 195 TLTYNSMAIDANGLVLAKYGNQTFVMGKVGVATFNNPEGLEKVGGNNYIQTSNSGNPIVA 254 Query: 189 LSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T++ G LE SN + E +MI ++ + + + I +++ + E + Sbjct: 255 GPGNNGAGTLQAGALEMSNVDLSTEFTEMIIASRAYQANSRSITTSDEMLQELLN 309 >gi|238755323|ref|ZP_04616666.1| Flagellar basal-body rod protein flgF [Yersinia ruckeri ATCC 29473] gi|238706459|gb|EEP98833.1| Flagellar basal-body rod protein flgF [Yersinia ruckeri ATCC 29473] Length = 251 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 99/255 (38%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQTLEQQAVTANNLANASTPGFRAQLSALRAV--PIDGPSMATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G +G LD AL+ D + A++ P G TR+G +V +G + + G Sbjct: 59 ASTPGADMSQGPMNFSGRPLDVALQQDGFMAVQLPDGTEAYTRNGNIQVAANGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI +P + E + G IS IA +G L V + R Sbjct: 118 -YPLMGDNG-PIDVPPQAE-VTIAADGTISALNAGDPPNTIAQIGRLKLVQAQGNELNRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + V V G LE SN + M MI ++F +I Sbjct: 175 DDGLFHLTPAALQQRGATLPNDPLVKVMPGVLEGSNVKPVETMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|269138583|ref|YP_003295283.1| flagellar basal-body rod protein [Edwardsiella tarda EIB202] gi|267984243|gb|ACY84072.1| flagellar basal-body rod protein [Edwardsiella tarda EIB202] gi|304558593|gb|ADM41257.1| Flagellar basal-body rod protein FlgF [Edwardsiella tarda FL6-60] Length = 251 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+NM+N+ T GFR V + + + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAIAANNMANSTTPGFRAQLAALRAV--PVDGESVETRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + +G T LD AL+ D W A++ P G TR+G ++ G L ++ G Sbjct: 59 ASTPMHDLSMGKLDYTERPLDVALQQDGWLAVQMPDGAEAYTRNGNLQINPQGML-TSQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + D PI IP + + + G I+ G I + L S V Sbjct: 118 HLVMGDNG--PIAIPDRAQ-LTIAADGTITALGAGDQPNATTQIGRLKLVKA--SAQEVV 172 Query: 172 RENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + G+ P L V V G LE SN + M MI ++F Sbjct: 173 HGDDGMFHLTPEAEQKRGAQLPLDPTVKVMPGVLEGSNVQPVEAMVNMITNARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + +A Sbjct: 233 VIRSVDDNEQKA 244 >gi|293395584|ref|ZP_06639867.1| flagellar basal-body rod protein FlgF [Serratia odorifera DSM 4582] gi|291421903|gb|EFE95149.1| flagellar basal-body rod protein FlgF [Serratia odorifera DSM 4582] Length = 251 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 97/250 (38%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V + Q + V Sbjct: 1 MDHAIYTAMGAARQTLDQQAITANNLANASTPGFRAQLAALRAV--PVDGPSLQTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ TG LD AL+ D + AL+ G TR+G +++ G L + G Sbjct: 59 ASTPGADMSQGALNYTGRPLDVALQQDGFLALQQADGSEAYTRNGNIQISSTGQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 P++ PI++P + E + G IS IA +G L V V R Sbjct: 118 -LPLMGDGG-PIEVPPQAE-ITIAADGTISALNPGDPPNTIAQIGRLKLVKADAREVMRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L++ V V G +E SN M M MI ++F +I Sbjct: 175 DDGLFHLTPATREQRGNQLQNDPLVQVMPGVIEGSNVKPMETMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 +++ A Sbjct: 235 HSVDENEQRA 244 >gi|226315010|ref|YP_002774906.1| flagellar hook-basal body protein [Brevibacillus brevis NBRC 100599] gi|226097960|dbj|BAH46402.1| putative flagellar hook-basal body protein [Brevibacillus brevis NBRC 100599] Length = 276 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 105/276 (38%), Gaps = 35/276 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 S NI +A ++Q L A+N+SN DT+G++ FSE++ N+ Sbjct: 1 MQSLNISTSAMRGIQQALDNTANNLSNIDTIGYKRRVASFSELLTDSMNEQPATDNQNRN 60 Query: 56 -------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES----------PRGI 98 S G L GS T D +EGD +F + Sbjct: 61 TPMGIRIGSGAHLGMTKLDLGQGSLKQTDVPTDVLIEGDGYFLVTRKIKDANNITVDEES 120 Query: 99 ILTRDGRFKV---TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 TR+G FK+ D G ++ S + + D I P+ + ++ G S G Sbjct: 121 RFTRNGSFKLSYDDDKGYVLHTSSGHILTDENGANIVFPEPVKNISISPDGTFSADGMPA 180 Query: 156 A-TMGLYSVDMSQGFVRRENSGISPNIPPTPLED-------LSGVTVKRGFLEDSNANSM 207 +G++ V+ + + + +GVT+++G LE SN + Sbjct: 181 PVKIGVWDVENPDQLKQVGENLFDAELAFGAGPQSKYTSAYDNGVTLRQGALESSNVSMT 240 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM Q++++ + + + I +++ M + S Sbjct: 241 EEMSQLVNIQRAYQLNSRAIGISDQMMG-IANQLRS 275 >gi|223040701|ref|ZP_03610970.1| flagellar basal-body rod protein [Campylobacter rectus RM3267] gi|222878065|gb|EEF13177.1| flagellar basal-body rod protein [Campylobacter rectus RM3267] Length = 270 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 28/269 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDID---- 53 M + A + RL +A+N++N +T+GF+ V F + ++++ Sbjct: 1 MNNGYYQATGAMVTQFNRLDVIANNLANINTIGFKRDDVVVGDFERIFKEYRDELPIKNH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALE-SPRGIILT 101 ++Y+ G + +LDFA++ D +F +E P + LT Sbjct: 61 TKDAAKFLNRTIDRVPQISEQYVDFSQGGLKFSNNDLDFAMKREDLFFLVEVKPGDVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLD-----MASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 ++G F + +DG LV+ G Y VL IQIP+ E F+ + G + + +A Sbjct: 121 KNGSFNLDEDGFLVTKEG-YKVLPSDYFSNNFQGIQIPEG-ERFSADKNGNLYSNEEPLA 178 Query: 157 TMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + + + + ++ + PN+ V + + SN N++ EM +I Sbjct: 179 RLYIAQPKEIRNLTKEGDNLYVLPNLKELEDVGGEIDAVAWKYTQISNVNAVTEMVGLIE 238 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + ++ + + EAI +AS Sbjct: 239 TQRFVEMYQKVMTSHMDDLNQEAISKLAS 267 >gi|157164118|ref|YP_001467097.1| flagellar basal-body rod protein [Campylobacter concisus 13826] gi|112799948|gb|EAT97292.1| flagellar basal-body rod protein [Campylobacter concisus 13826] Length = 269 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 109/267 (40%), Gaps = 26/267 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDID---- 53 MQ + A + RL+ +++N++N +T+G++ V F+ + ++++ Sbjct: 1 MQNGYYQATAGMVTQFNRLNVISNNLANVNTIGYKRNDVVIGDFARIFKETQDELPLKNH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTR 102 +EY G F + LDFA++ DA+F +++P G+ L++ Sbjct: 61 TKDGAKFLNRTLDRVPQVSEEYTDFSAGGFKYSSNTLDFAIKREDAFFLVDTPNGVKLSK 120 Query: 103 DGRFKVTDDGSLVSASGK------YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 +G F + DG +V+ G Y + IQ+PQ E+ + G + + Sbjct: 121 NGSFSLDGDGYIVTKEGYRVLPSGYEAQNPGQRGIQVPQG-EVLTGDKNGNLYSNNNQFS 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + + + ++ E +V +G+ + SN N + EM +I Sbjct: 180 KFYIAQPREIRDLKKVGDNLFETRNFDDITELDEADSVMQGYAQMSNVNPVLEMVGLIET 239 Query: 217 TQKFNSITTLIDENEKSMLE-AIRNIA 242 + + ++ + + + A++ +A Sbjct: 240 QRLVDMYQKVMTSHMTDLNQDAVQKLA 266 >gi|167463160|ref|ZP_02328249.1| flagellar basal-body rod protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383080|ref|ZP_08056907.1| flagellar basal-body rod-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152742|gb|EFX45368.1| flagellar basal-body rod-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 297 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 104/296 (35%), Gaps = 55/296 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M + +A +++ T +N++N +T G++ F E++ + D + Sbjct: 1 MLRGLYTASSGMIAQQRKHDTATNNIANMNTPGYKQSTALSRSFPEMLISRFRDDETGTQ 60 Query: 58 FVA-------SGKEYLSKEVGSFISTGTELDFAL-----------EGDA----------- 88 V + G T DFA+ G Sbjct: 61 QVGRLHTGVLMEENVAIPVQGVIEETRNPFDFAIVSDLQVPGAAFNGAGIYVNEDGETIY 120 Query: 89 ----WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI-----PQKDE 138 +F +E+ G I T +G+F V +G LV+A G VLD P+Q+ + + Sbjct: 121 KPQAYFMVENQAGEIRYTSNGKFHVDGNGFLVNAEG-LRVLDNNRRPMQLINLLTNEPIK 179 Query: 139 IFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP----L 186 V +G I + + +GL V + N N + Sbjct: 180 SVQVSNEGNILDENGYPYMNANEEPVRIGLAKVSDPHKLMHEGNGLYYLNQEDQALAEDV 239 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + V +++GF+E SN + M M+ + + + ++ +KS+ + + + Sbjct: 240 QPGDNVMIRQGFVEQSNVDPTQVMVDMMSALRAYEANQKMVQFYDKSLEKTVNEVG 295 >gi|34558103|ref|NP_907918.1| flagellar basal-body rod protein FlgG [Wolinella succinogenes DSM 1740] gi|34483821|emb|CAE10818.1| FLAGELLAR BASAL-BODY ROD PROTEIN FLGG [Wolinella succinogenes] Length = 277 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 112/276 (40%), Gaps = 36/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 MQ+ + + RL +++N++N +T GF+ V + + + + Sbjct: 1 MQSGYYSSTGGIVTQFHRLDMISNNLANANTTGFKRDDVVIGDFLRLYEQQKEPLPLEDQ 60 Query: 57 -------------SFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 + +EY + +G + DFAL+ +A+F +E+P GI TR Sbjct: 61 TREAAKFLNRAMDRVPSIVEEYTDRSIGGITPSENRFDFALQSENAYFMIETPEGIRYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLD----MASVPIQIPQKDEIFNVGEKGEIS-------QK 151 DG F + +G LV+ G + VL + I IP + G + + Sbjct: 121 DGSFTLNSEGRLVTKEG-FAVLPREFVQSRQYIDIP-DGVVIEADRNGNLYSRTLNNDEL 178 Query: 152 GKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT--VKRGFLEDSNANSM 207 G +I + + S + + + + +L+ + + +G+LE SN N++ Sbjct: 179 GDIIPLGNIAIASFENPKYLEKTGKNLYEYPQERMGERNLATNSGALVQGYLEKSNVNAV 238 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIA 242 +EM +I + + + ++ + + EAI +A Sbjct: 239 WEMTGLIETNRLVDMYSKVMKTHMDDLNTEAITKLA 274 >gi|226944493|ref|YP_002799566.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] gi|226719420|gb|ACO78591.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] Length = 251 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 22/251 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + + VA N++N T GFR ++ V + + V Sbjct: 1 MDRMLFTAMSGAKQSLDQQAVVAHNLANAVTPGFRAQLMELQAV--PVDGEGLPTRVSVR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G TG LD AL+G+AW A+++ G TR G ++ +G L++ +G Sbjct: 59 ATTSGVDFSQGPVTRTGRPLDVALDGNAWLAIQAADGSEAYTRRGDVQIDGNG-LMTVAG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVR 171 +P++ P+ +P + ++G G +S V+A + L S G + Sbjct: 118 -HPLIGDGG-PLTVPLGSQ-VSIGADGTVSVVEEGQDPDTSAVVARLKLVSAAP--GELE 172 Query: 172 RENSGISPNIP-----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 R G+ P PL + G LE SN ++ M MI +++ Sbjct: 173 RGEDGLFRAPPDDTGVSQPLAVDETARLVTGALEGSNVSATEAMVAMIDNARRYEMQMKA 232 Query: 227 IDENEKSMLEA 237 ID + + A Sbjct: 233 IDSADDNAQRA 243 >gi|261409669|ref|YP_003245910.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] gi|261286132|gb|ACX68103.1| fagellar hook-basal body protein [Paenibacillus sp. Y412MC10] Length = 293 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 51/292 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV-----GAIKNDI 52 M + + EQR +TV N++N +T G++ ++ F EV+ G +++ Sbjct: 1 MLRGLYTAASGMMTQEQRHNTVTQNIANVNTTGYKATNSVQRSFPEVLVSMIGGNESSNV 60 Query: 53 DQKISFVASGK----EYLSKEVGSFISTGTELDFAL------------------------ 84 +K+ +G G+ T DFAL Sbjct: 61 GRKLGKFNTGVYAEESISLYTEGALRETNKTTDFALVSSFTVQNPATGQAYPFDASGRYV 120 Query: 85 --EG------DAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 G + +F +++ G + TR+G F+V+ +G+L+S SG Y VLD + PI + Sbjct: 121 DENGEVIYRPEGFFTVQNENGDVRYTRNGSFRVSPEGNLLSESG-YQVLDNNNRPIVLTG 179 Query: 136 KDEIFNVGEKGEI-SQKGKVIATM-GLYSVDMSQGFVRRENSGISPNIPPTPL---EDLS 190 F V E+GEI G+ + G+ V G +R + P + Sbjct: 180 PASDFTVNEQGEIMDAAGRGTGIILGVSIVSQPHGLIREGHGVFRMADPDGEVRFMTPAD 239 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V++GF+E SN + M ++ + + + ++ ++++ +A+ I Sbjct: 240 NGVVRQGFIEGSNVDPTQSMVELTAALRAYETNQKIVQYYDRTLEKAVNEIG 291 >gi|56965598|ref|YP_177332.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] gi|56911844|dbj|BAD66371.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] Length = 265 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 101/265 (38%), Gaps = 26/265 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKN------- 50 M + LA + +A+N++N T G++ + F + ++ Sbjct: 1 MLKGLYTATSGMLAAQYHQDMLANNLANAQTPGYKAEQSVSRAFPTFLMEAQSVSKAGTV 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-------WFALESPRGIIL 100 + + V ++ + G TG D AL +FA+ + GI Sbjct: 61 QKQGLGSLATAVYLQEQQTNARQGDIQETGNTTDLALLQTGLEENNAVFFAVMTENGIRY 120 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 TR+G +V G L +A G + + PIQ+ E F+V E G + G+ T+ + Sbjct: 121 TRNGDLQVDSQGRLATA-GGHLLQSTEGGPIQV--DSEAFSVDESGAVVVAGENRGTIEI 177 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLT 217 D + R + P + ++++ +E SN ++ M M+ Sbjct: 178 VLADDTNELEREGDGLYMLENGELPSAHGNPDIDFSIRQAAIERSNVDTAASMNAMLSAY 237 Query: 218 QKFNSITTLIDENEKSMLEAIRNIA 242 + F + ++ ++SM +A+ + Sbjct: 238 RLFEANQKVVQAYDQSMDKAVNEVG 262 >gi|308184156|ref|YP_003928289.1| flagellar basal-body rod protein [Helicobacter pylori SJM180] gi|308060076|gb|ADO01972.1| flagellar basal-body rod protein [Helicobacter pylori SJM180] Length = 269 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLENQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGTFEGTHNPLDFALTSPNIYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + VL + I + E V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FKVLSRSGLNEKGGIMLMPNAE-IEVDQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +K+ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGESVHQVSDSGA-LKQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|311105936|ref|YP_003978789.1| flagellar basal-body rod protein FlgF [Achromobacter xylosoxidans A8] gi|310760625|gb|ADP16074.1| flagellar basal-body rod protein FlgF [Achromobacter xylosoxidans A8] Length = 254 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + +++NM+N +T GFR + V + ++S VA Sbjct: 1 MDRIIYTAMNGAARITEHQAALSNNMANVNTAGFREQIALYRSVPVTDGTSLPTRVSTVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 S S ++G+ +TG +LD AL + W A+++P+G TR G +V +G L ++ G Sbjct: 61 S-TPRNSFQMGNMQTTGRDLDVALSSERGWIAVQTPQGEAYTRAGGLQVGINGLLQTSLG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + PVL PI IP + + G I+ G + + L S Q + Sbjct: 120 Q-PVLSDQGGPIDIPDQAA-LTITADGTITAIGAGDAPNNILNLGRIKLASPQNDQ--LV 175 Query: 172 RENSGISP-----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + G+ P P+ + + G LE SN N M M MI ++F + Sbjct: 176 HGDDGVFRMAPVNGQPAPPVPADPSLRLLSGVLEGSNTNPMAAMVGMIANARRFEQQMQV 235 Query: 227 IDENEKSMLEA 237 I +++++ A Sbjct: 236 IQQSDRNAERA 246 >gi|294013087|ref|YP_003546547.1| flagellar basal-body rod protein FlgF [Sphingobium japonicum UT26S] gi|292676417|dbj|BAI97935.1| flagellar basal-body rod protein FlgF [Sphingobium japonicum UT26S] Length = 246 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 16/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N L A R + +++N++N +T GFR IK D + + Sbjct: 1 MDRLVNTALTAMRGAMARQAAISNNLANVNTTGFRAEIANAET--RWIKGDNLNTRAQAS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ GDA A+++P G TR G KV+D G L + G Sbjct: 59 EQVIAADMAQGAINETGNPLDVAMNGDAMLAVQAPDGGEAYTRRGDLKVSDSGLLTTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 VL PI +PQ D ++ + G I + + + L + S + Sbjct: 119 -LVVLGEGG-PITLPQMDS-VSIAKDGSIWGVPQGGDPANPQQVDKLKLVNPVGSS--IA 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ L D TV G LE SN N+ + QMI ++ + + +ID + Sbjct: 174 KGTDGLFREANGGVLPDDPIATVTGGSLEGSNVNATSALVQMIEASRAWETQIKMIDTAK 233 Query: 232 K 232 + Sbjct: 234 Q 234 >gi|90408061|ref|ZP_01216232.1| flagellar basal-body rod protein FlgF [Psychromonas sp. CNPT3] gi|90310818|gb|EAS38932.1| flagellar basal-body rod protein FlgF [Psychromonas sp. CNPT3] Length = 248 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 115/250 (46%), Gaps = 15/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I ++ L+ A+N++N + GF++ + + + A + ++ F Sbjct: 1 MDRLLYISMSGAKENMNALAIHANNLANANKTGFKSS-FEQARSMQAYGEGLPTRV-FSL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + + E G T +LD +++G+ WF ++S G +TR G + +G L+ ++G Sbjct: 59 AENPGQNFESGILQMTQRDLDISIKGEGWFMVDSKMGGQAMTRAGGLNINPEGFLIDSTG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKG------KVIATMGLYSVDMSQGFVR 171 VL PI IP E FN+ + G EI +G + IA + L + ++ Sbjct: 119 N-KVLSQKGAPIFIPLPVEKFNIRKDGMVEIRPEGAPADAMEEIAQIKLVNPNIRDIL-- 175 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 R G+ I + V+++ G LE SN N E+ +I+L ++F+ ++ + E Sbjct: 176 RGEDGLYRRIDGNDPIVDAKVSIESGSLEASNVNMSSELTGLINLQRQFDMQVKMMKKAE 235 Query: 232 KSMLEAIRNI 241 + M +A ++ Sbjct: 236 E-MDKASESL 244 >gi|330808196|ref|YP_004352658.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376304|gb|AEA67654.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 245 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 101/251 (40%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKYLYVAMTGASQNALAQRAHANNLANISTNGFQKDLEQARSM--PVFGDSFPARAFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG +LD A+ G W A+++P G R G V G L + +G Sbjct: 59 SERPATDFTPGALVETGRDLDVAVSGPGWMAVQNPDGGESYVRTGSLNVDALGVLRAGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PI +P + + +G+ G IS + + + L + D+ + Sbjct: 119 -MPVMGNGG-PIAVPPE-QKIEIGQDGTISIRAMGEGPRVMAEVDRIKLVNPDLKN--MT 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G P + V + GF E SN N++ EM ++ L ++F +++ Sbjct: 174 KGLDGSIRTKDGQPAPIDANVQLVSGFQEASNVNAVDEMTSVLALAKQFELHVKMMNTAK 233 Query: 231 --EKSMLEAIR 239 +++M ++ Sbjct: 234 EGDEAMARVLQ 244 >gi|28211309|ref|NP_782253.1| flagellar basal body rod protein FlgG [Clostridium tetani E88] gi|28203749|gb|AAO36190.1| flagellar basal-body rod protein flgG [Clostridium tetani E88] Length = 285 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 108/285 (37%), Gaps = 47/285 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M G +A A +++L +++N++N +T G++ V F +++ + + Sbjct: 1 MLRVLWSGRSAMYAQQEKLDAISNNIANVNTEGYKRQDVSFQDLMNETLDRRGYPVNEEG 60 Query: 57 -------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + V +G G+ +TG+ DFA++G+ +F + S R G F + Sbjct: 61 NRNLIHGTGVKTGPWIRDNTQGTLNNTGSSTDFAIDGNGYFKVFSNDKEYYIRAGNFNLD 120 Query: 110 DDGSLVSASGKYPVLDMASVPI-----------------------------QIPQKDEIF 140 + G+LV +G +D I + P + F Sbjct: 121 NKGNLVDKNGNILEIDRNIENIIDEDEEYDFDDDYYDDYEDYDDDFGEVQRRTPLIKDNF 180 Query: 141 NVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 V + G + +K ++I + +Y F+ ++ P P + V + Sbjct: 181 YVEKDGRVYLKDAKKPRLIGKINVYDAVGENAFISVSDNLYKPVQGVNP--EAVNSDVLQ 238 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G++E SN EM MI + F + + ++ M I N+ Sbjct: 239 GYVERSNVRMEKEMSDMIVSQRAFEFSSRAVKAADE-MWGMINNL 282 >gi|325927876|ref|ZP_08189100.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas perforans 91-118] gi|325541716|gb|EGD13234.1| flagellar basal-body rod protein FlgF, proteobacterial [Xanthomonas perforans 91-118] Length = 243 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 18/241 (7%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 + A Q STV+ N++N DTVGF+ +E +I + + + + Sbjct: 1 MTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALHVDQGF-DR 58 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD +L+ D W A++SP G TR+G +T +G LV+A+G + VLD Sbjct: 59 SQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG-HAVLDEG 117 Query: 128 SVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISP 179 P+ IP + +G G IS Q ++ M + VD + R G+ Sbjct: 118 GNPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLTRRPDGLMR 174 Query: 180 NIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 N P + + G TV G LE SN ++ + +MI L ++F +I + + Sbjct: 175 NTSTDPAQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNGDDNAQS 234 Query: 237 A 237 A Sbjct: 235 A 235 >gi|251772413|gb|EES52980.1| flagellar basal body rod protein [Leptospirillum ferrodiazotrophum] Length = 265 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 98/265 (36%), Gaps = 28/265 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------- 49 M+ + ++ EQ + ++ N++N +T GFR +V F + + Sbjct: 1 MRRAEFALVSGAQGQEQMMDVLSSNLANVNTPGFRKDRVMFRSYLPHREYLHRTPPDRPG 60 Query: 50 -------------NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 I + Y+ E G F STG LD AL G + + +P Sbjct: 61 FNLTPFGTFPTPWGMAGSDIPHSGVDRIYVRYEEGEFQSTGNPLDVALSGKGFLTVRTPG 120 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G +LTR+G V G L + G +P++ + I +P + + G++ KV+ Sbjct: 121 GTLLTRNGHLTVDSQGRLTTHEG-HPLVGVDGKEIHLPSGVDPIRIDSAGKVFSGEKVVG 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + + + + + G+ + V+ G +E SN EM +MI Sbjct: 180 QLAISAPAGPMEHLTKVGDGLFFSPDGL---VKGEAVVRNGGVEGSNVKGTSEMVRMIQG 236 Query: 217 TQKFNSITTLIDENEKSMLEAIRNI 241 + + + + + ++ Sbjct: 237 MRTYQTDLQALHTLNDLTNRTVNDM 261 >gi|34497160|ref|NP_901375.1| flagellar basal-body rod protein FlgF [Chromobacterium violaceum ATCC 12472] gi|34103017|gb|AAQ59380.1| flagellar basal-body rod protein FlgF [Chromobacterium violaceum ATCC 12472] Length = 243 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 15/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + + A+N++N +T GFR V + Sbjct: 1 MDKLIYTAMSGAGRMLRAQQIHANNLANAETGGFRADIDT--AVSQQVPGYGYDARLLSQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + LS G+ + TG +LD AL+GD +FA+ +P G TR G DG+L S +G Sbjct: 59 NAPTALSDRNGTVVETGRDLDIALQGDGFFAVSAPDGSEAYTRAGSMVAGPDGTL-SVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRE 173 +PVL PI++P+ +V G IS + + + L D + V + Sbjct: 118 -HPVLGDGG-PIRLPEGFLKVSVAADGTISVLNPDDAAMQPVDKLKLVKPDPRE--VGKR 173 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G+ PL V V+ G LE SN +++ EM + L + F L + Sbjct: 174 PDGLIAARQGGPLPVDDSVRVQSGHLERSNVSAVEEMVSTMTLNRNFEMQMKLFNAASD- 232 Query: 234 MLEAIRNI 241 M EA + Sbjct: 233 MNEAGNRL 240 >gi|258404726|ref|YP_003197468.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] gi|257796953|gb|ACV67890.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] Length = 243 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 100/236 (42%), Gaps = 8/236 (3%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIKNDIDQKISFVASGKEYLS 67 L+ RL +++N++N D GF+ ++ F ++ A + S + + Sbjct: 11 LSGAALERTRLQVLSNNLANIDNAGFKQDRLLFETQLDNAQAGRTGEGTSRLQMTSTHTD 70 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD A++G +F + + G TR G F + DG+LV+ +G+ V + Sbjct: 71 FSQGGLQHTGRPLDLAIKGGGFFKVATDDGFAYTRHGSFVLQPDGALVTPTGEQVVGETG 130 Query: 128 SVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 V + D + E+G + + G + LY+VD Q ++ + Sbjct: 131 PVNLT----DSNVRISEEGSVFGENGVEQGQLDLYTVDDLQQLEKQGANLWRRP-EGVSE 185 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 ++ T+ +G LE SN +++ ++I + F S I + ++ + + Sbjct: 186 RVVAESTLHQGQLESSNVSAIEMTTELIQAERGFQSFQKAIKAYD-TVAQKTNTVG 240 >gi|217031579|ref|ZP_03437084.1| hypothetical protein HPB128_21g137 [Helicobacter pylori B128] gi|298736702|ref|YP_003729232.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] gi|216946779|gb|EEC25375.1| hypothetical protein HPB128_21g137 [Helicobacter pylori B128] gi|298355896|emb|CBI66768.1| flagellar basal-body rod protein FlgG [Helicobacter pylori B8] Length = 269 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYATTGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPVLSEIYTDRSLGAFEGTHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F V DG LV+ +G + VL + I + E V + G I+ + Sbjct: 121 DGHFSVDKDGFLVTLNG-FRVLSRSGLNEKGGIMLMPNAE-IEVNQNGGITFRDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + SG +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGVHQVSDSGA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|310644367|ref|YP_003949126.1| flagellar basal body rod protein [Paenibacillus polymyxa SC2] gi|309249318|gb|ADO58885.1| Flagellar basal body rod protein [Paenibacillus polymyxa SC2] Length = 294 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 122/293 (41%), Gaps = 52/293 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV----GAIKNDID 53 M A + ++R TV N++N +T G++ +++ F E++ G ++ D Sbjct: 1 MLRGLYTAAAGMMTQQRRHDTVTQNIANMNTTGYKQENSVQRSFPEMLISMTGGNPDNPD 60 Query: 54 QKISFVASGK----EYLSKEVGSFISTGTELDFALEGD---------------------- 87 + + + +G G+ +G DFAL+ + Sbjct: 61 RTVGKLNTGVFAEESLSPYIQGALKDSGQTTDFALQSNINVNDPATGRPMAFDQAGKFIN 120 Query: 88 ----------AWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 A+F + G + TRDG F+V G+L+S++G VLD PIQ+ Sbjct: 121 ANGEVTYRPEAFFTVRDNNGNVRYTRDGHFQVNGTGALLSSTGS-AVLDTNGNPIQLTGS 179 Query: 137 DEIFNVGEKGEI--SQKGKVIAT-MGLYSVDMSQGFVRRENSGISPNIPPTP----LEDL 189 V E+G++ SQ +++ T +G+ +D VR N N + Sbjct: 180 VSALKVNERGQLVDSQSNQLLGTTLGISVIDRPYQLVREGNGNFRLNDTDGATARMMTAN 239 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V+V++G+LE SN ++ M M+ + + + +I +KS+ +A+ + Sbjct: 240 DTVSVRQGYLEVSNVDAAQSMVDMMAALRAYEANQKVIQFYDKSLDKAVNEVG 292 >gi|126697840|ref|YP_001086737.1| flagellar basal body rod protein FlgG [Clostridium difficile 630] gi|115249277|emb|CAJ67090.1| Flagellar hook-basal body complex protein FlgG1 [Clostridium difficile] Length = 257 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 105/260 (40%), Gaps = 22/260 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M I ++A + +Q+ + V +N++N DT G+++ ++ F E+ N+ Sbjct: 1 MIRGLYIAVSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTK 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + + G +T ++D A++G +F + G TR+G F Sbjct: 61 QKQIIGDISPGISMDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQ---IPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 + + G L+++ G Y VL + I ++ F V + IS G + + Sbjct: 121 RTDNQGDLITSEGYY-VLGTNTATGAVGHINVGNQKFEVAKDNTISLDGNAMYKFNIVDF 179 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + ++ ++ + +E SN + + E+ M+ +++++ + Sbjct: 180 NNYNNLKKEGDNLY----SGGGAMKVNNALTIQSAIESSNVDMVSEINNMMTISREYEAN 235 Query: 224 TTLIDENEKSMLEAIRNIAS 243 +I + + + I S Sbjct: 236 QKIIQAMDSKLAKIASEIGS 255 >gi|285018208|ref|YP_003375919.1| flagellar basal-body rod protein flgf [Xanthomonas albilineans GPE PC73] gi|283473426|emb|CBA15931.1| probable flagellar basal-body rod protein flgf [Xanthomonas albilineans] Length = 251 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 14/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A Q TV+ N++N +T GF+ +E + +I + Sbjct: 1 MDKALYVAMTGARASLQAQGTVSHNLANVETAGFKAQLAN-TEAFRIQGSGYPSRIDALH 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + ++VG+ TG LD +L + W A+++ G TR G +T +G LV+ASG Sbjct: 60 IDQGF-DRDVGAQQVTGNPLDVSLVANNWLAVQTSDGKEAYTRGGELALTANGQLVTASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRE 173 + VLD P+ IP + +G G +S + + ++ +G L V + R Sbjct: 119 R-AVLDTEGNPMSIPPH-QSLEIGNDGTVSIVPLGEGPQAMSAIGTLKVVTAPADQLTRR 176 Query: 174 NSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 G+ NI P + G + G LE SN ++ + QMI L ++F +I Sbjct: 177 PDGLMRNISEDPTKAFPLATGTALHTGALEGSNVDAAGALVQMIQLQRQFEMQVKVIKNG 236 Query: 231 EKSMLEA 237 +++ A Sbjct: 237 DENAQSA 243 >gi|325567523|ref|ZP_08144190.1| flagellar hook-basal body protein [Enterococcus casseliflavus ATCC 12755] gi|325158956|gb|EGC71102.1| flagellar hook-basal body protein [Enterococcus casseliflavus ATCC 12755] Length = 298 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 117/297 (39%), Gaps = 60/297 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ L+ ++ V++N++N +TVGF++ +V F +++ ++ + Sbjct: 1 MLRSLYSGVSGMKNLQTKMDVVSNNIANVNTVGFKSSRVLFQDMMSQTMSNATAPGNGLG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGR 105 V +G VG+ STG +DF + G +F ++ P TRDG Sbjct: 61 GINATQIGLGVQTGSIDTINTVGAPQSTGRSMDFYISGQGYFMVQGPGANGETYYTRDGA 120 Query: 106 FKVTDDGSLVSASGKYPVLD---MASVPIQIPQK-DEIFNVGEKGEIS---------QKG 152 F +G+L ++ G VL P+ DE + +G +S G Sbjct: 121 FVRDSNGTLTNSDG-MQVLGRSVNGGQPVVYDDNFDENTALSGQGAVSPLSIPSTLTVNG 179 Query: 153 K------------------------VIATMGLYSVDMSQGFVRRENSGI------SPNIP 182 + V+ +G+ + + +G + + I Sbjct: 180 ETLTYNSMAIDANGLVLAKYGNQTFVMGKVGVATFNNPEGLEKVGGNNYIQTSNSGNAIV 239 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + +G T++ G LE SN + E +MI ++ + + + I +++ + E + Sbjct: 240 AGPGNNGAG-TLQAGALEMSNVDLSTEFTEMIIASRAYQANSRSITTSDEMLQELLN 295 >gi|238923132|ref|YP_002936645.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] gi|238874804|gb|ACR74511.1| flagellar basal body and hook protein [Eubacterium rectale ATCC 33656] gi|291523979|emb|CBK89566.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629] Length = 266 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 26/266 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV---------GAI 48 M + +R+ +A+N++N+DT GF+ F + + Sbjct: 1 MVKGLYTAHTGMVNEMKRMDVLANNLANSDTYGFKKEGTTSHSFKNELAIKIKDTSNYGL 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGII---LTRD 103 ++ V G+ Y + GSF T D A+ G +FA+ G TRD Sbjct: 61 HKNLGSMTYGVHLGETYTDWDEGSFKVTDNPTDLAIGGKGFFAVAFTDKSGQTSVKYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPV-------LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G FKV DG LV+A G + + D +E F+V G I+Q +++ Sbjct: 121 GAFKVNADGYLVTADGDHVLNATGALSGDGGEANWVKVDPNEKFSVNSLGYITQNNQLVG 180 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 T+G+ VD + + + + + +++G LE SN N + EM MI + Sbjct: 181 TIGVVDVDNYDYIEKYGENLYNLTAGGNIIASDA--EIEQGALETSNVNVVNEMVNMITI 238 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 + + + +I ++++ +A+ N+ Sbjct: 239 QRAYEAGQKVITSIDETLDKAVNNVG 264 >gi|317492427|ref|ZP_07950856.1| flagellar basal-body rod protein FlgF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919766|gb|EFV41096.1| flagellar basal-body rod protein FlgF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 251 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + A+NM+N T GFR V ++ D + + VA Sbjct: 1 MDHAIYTAMGAASQTLEQQAITANNMANASTPGFRAQLAALRAV--PVEGDSIETRTLVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + +G T LD AL+ D W A+ + G TR+G ++ G L ++ G Sbjct: 59 ASTPMHDMSMGKLDYTERPLDVALQQDGWLAVRNADGTEAYTRNGNLQINTAGQL-TSQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + D PI IP + E + G I+ G + + L + + Sbjct: 118 NLVIGDNG--PIAIPDRAE-ITIAADGTITALGAGDQPNTTTQVGRLKLVKATSQE--MA 172 Query: 172 RENSGISPNIPPTPLEDLSGVTV------KRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + G+ P + + +T+ G LE SN + M MI ++F Sbjct: 173 HGDDGLFHLTPEAQQQRGATLTLDPEMRLMPGVLEGSNVKPVDTMVDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + +A Sbjct: 233 VIRSVDDNEQKA 244 >gi|138896904|ref|YP_001127357.1| flagellar hook-basal body protein [Geobacillus thermodenitrificans NG80-2] gi|134268417|gb|ABO68612.1| Flagellar hook-basal body protein [Geobacillus thermodenitrificans NG80-2] Length = 273 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 33/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S + AL+QRL T++ N+ N++T GF+ + F+E++ + + Sbjct: 1 MLRSMHTAANTMNALQQRLDTLSHNIVNSNTTGFKRREASFAELLTQQVDRLPDDEAPRQ 60 Query: 54 -----QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRG-----IILTR 102 + + L G TG LDFA + WF + G I TR Sbjct: 61 TPAGVRYGNGAGLASTMLVTAQGPLTETGRALDFAFTAANQWFRVRVTDGNGVATIGYTR 120 Query: 103 DGRFKVTDDGS---LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIA 156 G F +T G LV++ G+ PVLD + PI++P F + G ++ G V+A Sbjct: 121 AGNFSLTPIGDRLALVTSDGR-PVLDETNAPIELPAHATGFQLSPTGTLTATDANGAVVA 179 Query: 157 T--MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYE 209 +G+ + Q ++ + P ++L+G + +K+G LE SN + E Sbjct: 180 RVNLGVTVIRRPQLLEALGDNVFTLPTAPGATQELNGNLRSQIAMKQGALEQSNVDLGEE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + ++ T+ + I +E+ ML I N+ S Sbjct: 240 LIGLMATTRAYQLNARAISISEQ-MLGLINNLRS 272 >gi|310644366|ref|YP_003949125.1| fagellar hook-basal body protein [Paenibacillus polymyxa SC2] gi|309249317|gb|ADO58884.1| Fagellar hook-basal body protein [Paenibacillus polymyxa SC2] Length = 275 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 111/278 (39%), Gaps = 38/278 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + +++QRL +ADN++N +TVG+++ + F +V+ ++ + Sbjct: 1 MNNSMIGAMVSMASVQQRLDLIADNIANVNTVGYKSKQGSFEDVLANVQQQPSTYLQNGR 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V + + E G TG D A++G+A F ++ TRDG F Sbjct: 61 AMPLGYNLGYGVKTTAIMKNMEQGPLKETGLPTDLAIQGNALFEIQGNGQKAWTRDGGFH 120 Query: 108 V------TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA----- 156 + L +A G Y VLD +P+ P + + GE+ + Sbjct: 121 FIPDPNDNETMMLTTAEG-YSVLDNNDIPVTAPAGSK-VAINSDGELLIRANGTGAPTVG 178 Query: 157 -TMGLYSVDMSQGFVRRENSGISPN----------IPPTPLEDLSGVTVKRGFLEDSNAN 205 + L V +G +R+++ + V+V+ G+LE+SN N Sbjct: 179 QRIKLMDVQRPEGLQQRDDNLFVLANGVTEADVFGAAGVAGAVPTDVSVRSGYLEESNVN 238 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM M+ + + + + + +M+ N+ + Sbjct: 239 LAGEMTDMMQVQRMYQMAARAL-TSSDTMMNLANNLRA 275 >gi|22126388|ref|NP_669811.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM 10] gi|45441407|ref|NP_992946.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|108807175|ref|YP_651091.1| flagellar basal-body rod protein FlgG [Yersinia pestis Antiqua] gi|108812481|ref|YP_648248.1| flagellar basal-body rod protein FlgG [Yersinia pestis Nepal516] gi|145598608|ref|YP_001162684.1| flagellar basal-body rod protein FlgG [Yersinia pestis Pestoides F] gi|149366249|ref|ZP_01888284.1| flagellar basal-body rod protein FlgG [Yersinia pestis CA88-4125] gi|162420398|ref|YP_001606475.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola] gi|165925935|ref|ZP_02221767.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165938754|ref|ZP_02227309.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|166010911|ref|ZP_02231809.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166210683|ref|ZP_02236718.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|167401156|ref|ZP_02306659.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419985|ref|ZP_02311738.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425757|ref|ZP_02317510.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467493|ref|ZP_02332197.1| flagellar basal-body rod protein FlgG [Yersinia pestis FV-1] gi|218928924|ref|YP_002346799.1| flagellar basal-body rod protein FlgG [Yersinia pestis CO92] gi|229896244|ref|ZP_04511414.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|229897179|ref|ZP_04512335.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897905|ref|ZP_04513056.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229902863|ref|ZP_04517980.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|270486643|ref|ZP_06203717.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294504028|ref|YP_003568090.1| flagellar basal-body rod protein FlgG [Yersinia pestis Z176003] gi|21959374|gb|AAM86062.1|AE013853_10 cell-distal portion of basal-body rod [Yersinia pestis KIM 10] gi|45436267|gb|AAS61823.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Microtus str. 91001] gi|108776129|gb|ABG18648.1| flagellar basal-body rod protein FlgG [Yersinia pestis Nepal516] gi|108779088|gb|ABG13146.1| flagellar basal-body rod protein FlgG [Yersinia pestis Antiqua] gi|115347535|emb|CAL20444.1| flagellar basal-body rod protein FlgG [Yersinia pestis CO92] gi|145210304|gb|ABP39711.1| flagellar basal-body rod protein FlgG [Yersinia pestis Pestoides F] gi|149292662|gb|EDM42736.1| flagellar basal-body rod protein FlgG [Yersinia pestis CA88-4125] gi|162353213|gb|ABX87161.1| flagellar basal-body rod protein FlgG [Yersinia pestis Angola] gi|165913368|gb|EDR31990.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. IP275] gi|165922139|gb|EDR39316.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. F1991016] gi|165990255|gb|EDR42556.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. E1979001] gi|166207863|gb|EDR52343.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. B42003004] gi|166961680|gb|EDR57701.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049545|gb|EDR60953.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055156|gb|EDR64953.1| flagellar basal-body rod protein FlgG [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680310|gb|EEO76409.1| Flagellar basal-body rod protein flgG [Yersinia pestis Nepal516] gi|229688946|gb|EEO81011.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. India 195] gi|229693516|gb|EEO83565.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701167|gb|EEO89196.1| Flagellar basal-body rod protein flgG [Yersinia pestis Pestoides A] gi|262361786|gb|ACY58507.1| flagellar basal-body rod protein FlgG [Yersinia pestis D106004] gi|262366078|gb|ACY62635.1| flagellar basal-body rod protein FlgG [Yersinia pestis D182038] gi|270335147|gb|EFA45924.1| flagellar basal-body rod protein FlgG [Yersinia pestis KIM D27] gi|294354487|gb|ADE64828.1| flagellar basal-body rod protein FlgG [Yersinia pestis Z176003] gi|320015465|gb|ADV99036.1| Flagellar basal-body rod protein flgG [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 232 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 32/237 (13%) Query: 29 TDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVASGKEYLSKE----VGSFIS 75 T GF+ + F +++ + S + +G ++ E G+ Sbjct: 1 MSTNGFKRQRAVFEDLLYQTLRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQ 60 Query: 76 TGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP 134 T D A++G+ +F ++ P G TRDG F+V +G LV+A G + V I IP Sbjct: 61 TNNSKDIAIKGEGFFQVQMPDGTNAYTRDGSFQVDQNGQLVTA-GGFQVQPA----ITIP 115 Query: 135 QKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGF------VRRENSGISPNIP 182 VG G +S + + + L + + G + +E + Sbjct: 116 ANALSMTVGRDGIVSVTLQGQTATQQVGQLTLTTFINNSGLESVGENLYQETASSGAPNE 175 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TP + G+ + +G++E SN N E+ MI + + + + +++ + + + Sbjct: 176 TTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQTQRAYEINSKAVSTSDQMLQKLAQ 231 >gi|242309753|ref|ZP_04808908.1| flagellar basal-body rod protein flgg [Helicobacter pullorum MIT 98-5489] gi|239523754|gb|EEQ63620.1| flagellar basal-body rod protein flgg [Helicobacter pullorum MIT 98-5489] Length = 277 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 38/278 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ F + + RL +A+N++N +T GF+ V + + I++ Sbjct: 1 MQGGFYSSVGGMVTQINRLDVIANNIANANTTGFKRDDVVIGDFMRLYEQHKEFLPIEDQ 60 Query: 52 IDQKISF--------VASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTR 102 F +E+ + G + T DFAL +A+F +E+P GI +R Sbjct: 61 TKDAAKFYNRSLNRVPQIVEEFTDRSAGGVVQTENTFDFALSRENAYFMIETPEGIRFSR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ-----KDEIFNVGEKGEIS-------- 149 DG F + ++G LV+ G Y VL I+ PQ V G I Sbjct: 121 DGSFVLNEEGRLVNKEG-YAVLPREY--IESPQYIDFVDGFQVEVDSDGNIYNRSLTNEE 177 Query: 150 -QKGKVIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLS-GVTVKRGFLEDSNANS 206 + + + + S + + + ++ P +E L V++GFLE SN N Sbjct: 178 LDEALLGGNIAVVSFENPKFLQKVGDNLYKYPEERMNEMEVLERSGAVRQGFLEKSNINV 237 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 +YEM +I + + + ++ + + EAI +A+ Sbjct: 238 VYEMTGLIETNRLVEAYSKVLKTHMDDLNTEAITRLAA 275 >gi|56421866|ref|YP_149184.1| flagellar hook-basal body protein [Geobacillus kaustophilus HTA426] gi|56381708|dbj|BAD77616.1| flagellar hook-basal body protein [Geobacillus kaustophilus HTA426] Length = 273 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 33/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S AL+QRL T++ N++N++TVGF+ + F+E++ + + Sbjct: 1 MLRSMLTAANTMNALQQRLDTISHNIANSNTVGFKRREASFAELLTQQIDRLPNDEAPRQ 60 Query: 56 -------ISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTR 102 + L + G+ + TG LDFAL + + WF + I TR Sbjct: 61 TPEGVRYGNGARLASTMLITKQGALVETGRRLDFALTDENQWFRVRLADQNGAETIGYTR 120 Query: 103 DGRFKVTD-DGS--LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIA 156 G F + +G L ++ G + VLD + PI +P + G ++ G+V+A Sbjct: 121 AGNFSLAPMNGQLALTTSDGLF-VLDERNAPIVLPADAHDVQMSPTGTLTATNTDGRVVA 179 Query: 157 T--MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYE 209 +G+ + Q R + + P E+L+G ++VK+G LE +N + E Sbjct: 180 RVNLGVTMIRRPQLLEARGGNVYALPNVPGAAEELNGSLRGQISVKQGALEQANVDLGEE 239 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 M ++ ++ + + +E+ ML I + S Sbjct: 240 MVGLMATSRAYQLNARAVSISEQ-MLGLINGMRS 272 >gi|308071139|ref|YP_003872744.1| flagellar basal body rod protein [Paenibacillus polymyxa E681] gi|305860418|gb|ADM72206.1| Flagellar basal body rod protein [Paenibacillus polymyxa E681] Length = 294 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 120/293 (40%), Gaps = 52/293 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVV----GAIKNDID 53 M A + ++R TV N++N +T G++ +++ F E++ G ++ Sbjct: 1 MLRGLYTAAAGLMTQQRRHDTVTQNIANMNTTGYKQENSVQRSFPEMLISMTGGNPDNPG 60 Query: 54 QKISFVASGK----EYLSKEVGSFISTGTELDFALEGD---------------------- 87 + + + +G G+ +G DFA++ + Sbjct: 61 RTVGKLNTGVFAEESLSPYIQGALKDSGQATDFAIQSNINVNDPATGQPMAFDQAGKFIN 120 Query: 88 ----------AWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 A+F + G + TRDG F+V G+L+S++G VLD PIQ+ Sbjct: 121 ANGEVTYRPEAFFTVRDSNGNVRYTRDGHFQVNGAGALLSSTGS-AVLDTNGNPIQLTGA 179 Query: 137 DEIFNVGEKGEI--SQKGKVIAT-MGLYSVDMSQGFVRRENSGISPNIPPTP----LEDL 189 V E+GE+ SQ + + T +G+ +D +R N N + Sbjct: 180 VSELKVNERGELVDSQSNQTLGTTLGISVIDRPYQLIREGNGNFRLNDTDGATARMMTAN 239 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V+V++G+LE SN ++ M M+ + + + +I +KS+ +A+ + Sbjct: 240 DAVSVRQGYLEVSNVDASQSMVDMMAALRAYEANQKVIQFYDKSLDKAVNEVG 292 >gi|229918635|ref|YP_002887281.1| hypothetical protein EAT1b_2922 [Exiguobacterium sp. AT1b] gi|229470064|gb|ACQ71836.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sp. AT1b] Length = 303 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 104/300 (34%), Gaps = 61/300 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G++ + +L V +N++N +T G++ +V F ++V + Sbjct: 1 MLRAMYSGISGLKNFQSKLDVVGNNIANVNTFGYKKGRVTFKDLVSQQVGSASAGNATTG 60 Query: 61 S------------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 G+ +TG LD + G+ ++A I TR G F Sbjct: 61 GVNPKEVGLGGTMATVDNVYNQGAMQNTGRALDVGISGEGFYATMVNGQIQYTRAGNFYT 120 Query: 109 TDDGSLVSASGKYPVLDMAS---------------------------------------V 129 + G+LV+ G Y + + Sbjct: 121 DNQGNLVTGDGTYLIGSQTNTLPPSGVAGVAATPTAANMGANLDAPYLAADAGTQTVKYG 180 Query: 130 PIQIPQKDEIFNVGEKGEIS---QKGK--VIATMGLYSVDMSQGFVRRE-NSGISPNIPP 183 I+IP + ++G+ G++S G+ + + + + G + N+ + Sbjct: 181 RIKIPTDAKSLSIGKDGQVSFVAANGELRIAGYIVTSNFSNNAGLSKVGANNFVQSQNSG 240 Query: 184 TPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + G + G LE SN + E +MI + F + T +I +++ + E + Sbjct: 241 APQFGVPGAGGRGELVSGALEMSNVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVN 300 >gi|255099438|ref|ZP_05328415.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-63q42] gi|255305296|ref|ZP_05349468.1| flagellar basal body rod protein FlgG [Clostridium difficile ATCC 43255] Length = 257 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 104/260 (40%), Gaps = 22/260 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M ++A + +Q+ + V +N++N DT G+++ ++ F E+ N+ Sbjct: 1 MIRGLYTAVSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTK 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + + G +T ++D A++G +F + G TR+G F Sbjct: 61 QKQIIGDISPGISMDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQ---IPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 + + G L+++ G Y VL + I ++ F V + IS G + + Sbjct: 121 RTDNQGDLITSEGYY-VLGTNTATGAVGHINVGNQKFEVAKDNTISLDGNAMYKFNIVDF 179 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + ++ ++ + +E SN + + E+ M+ +++++ + Sbjct: 180 NNYNNLKKEGDNLY----SGGGAMKVNNALTIQSAIESSNVDMVSEINNMMTISREYEAN 235 Query: 224 TTLIDENEKSMLEAIRNIAS 243 +I + + + I S Sbjct: 236 QKIIQAMDSKLAKIASEIGS 255 >gi|317121026|ref|YP_004101029.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] gi|315591006|gb|ADU50302.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] Length = 289 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 103/286 (36%), Gaps = 49/286 (17%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + A A +++ A+N++N +T GF+ + F+++V A + A G Sbjct: 4 RALWTSAAGMAAAARQVDVTANNLANVNTPGFKASRADFADLVYAALAVPASPATAAAGG 63 Query: 63 KEY----------LSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTD 110 + S G STG+ D A++G +F + P ++LTR G F ++ Sbjct: 64 VQAGHGVRLAATPRSWRQGPLQSTGSPWDLAIDGAGFFQVVEPGTGEVLLTRGGAFVLSP 123 Query: 111 --------------------------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGE 144 + LV+ P+L P+ +P + V Sbjct: 124 LPGGAPGAGPGEDPGQGPGGGPGGAGEALLVTDGAGRPLLRDDGRPLVLPAGARSWVVTP 183 Query: 145 KGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPT----PLEDLSGVTVK 195 +GE+ G+ + + L R +P P + +G V+ Sbjct: 184 EGEVRAVLAGGREVPAGRLALVVPAAPDALESRGEGLYAPGPGAVAALPPGQGGAG-RVR 242 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +G LE +N + EM +++ + + + ++ M I + Sbjct: 243 QGMLEQANVDLAVEMTRLLAAQRAYQLNARAVLTGDEMMG-LINRL 287 >gi|238764393|ref|ZP_04625343.1| Flagellar basal-body rod protein flgF [Yersinia kristensenii ATCC 33638] gi|238697419|gb|EEP90186.1| Flagellar basal-body rod protein flgF [Yersinia kristensenii ATCC 33638] Length = 251 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAV--PIDGPSMATRTMVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +++ DG + + G Sbjct: 59 ASTPGVDISQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQISADGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI +P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIDVPPQAA-ITIAADGTISALNAGDSPNTIAQLGQIKRVRATAGEVMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + + V G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPETQQARGAQLANDPLIKVMPGVLEGSNVKAVEAMTDMIANARSFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|254973935|ref|ZP_05270407.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-66c26] gi|255091321|ref|ZP_05320799.1| flagellar basal body rod protein FlgG [Clostridium difficile CIP 107932] gi|255312979|ref|ZP_05354562.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-76w55] gi|255515738|ref|ZP_05383414.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-97b34] gi|255648832|ref|ZP_05395734.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-37x79] gi|260682049|ref|YP_003213334.1| flagellar basal body rod protein FlgG [Clostridium difficile CD196] gi|260685647|ref|YP_003216780.1| flagellar basal body rod protein FlgG [Clostridium difficile R20291] gi|306518946|ref|ZP_07405293.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-32g58] gi|260208212|emb|CBA60569.1| flagellar basal-body rod protein FlgG [Clostridium difficile CD196] gi|260211663|emb|CBE01931.1| flagellar basal-body rod protein FlgG [Clostridium difficile R20291] Length = 257 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 104/260 (40%), Gaps = 22/260 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M ++A + +Q+ + V +N++N DT G+++ ++ F E+ N+ Sbjct: 1 MIRGLYTAVSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSFDELKLEGYNNYANGTK 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++ + + G +T ++D A++G +F + G TR+G F Sbjct: 61 QKQIIGDISPGISMDETITNFNQGPIKTTDNKMDVAIQGKGFFLVSDAAGNQFYTRNGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQ---IPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 + + G L+++ G Y VL + I ++ F V + IS G + + Sbjct: 121 RTDNQGDLITSEGYY-VLGTNTATGAVGHINVGNQKFEVAKDNTISLDGNAMYKFNIVDF 179 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + ++ ++ + +E SN + + E+ M+ +++++ + Sbjct: 180 NDYNNLKKEGDNLY----SGGGAMKVNNALTIQSAIESSNVDMVSEINNMMTISREYEAN 235 Query: 224 TTLIDENEKSMLEAIRNIAS 243 +I + + + I S Sbjct: 236 QKIIQAMDSKLAKIASEIGS 255 >gi|290474973|ref|YP_003467857.1| flagellar basal body rod cell-proximal protein [Xenorhabdus bovienii SS-2004] gi|289174290|emb|CBJ81080.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Xenorhabdus bovienii SS-2004] Length = 251 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 99/255 (38%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A + + A+N++N T GF+ V I+ + + Sbjct: 1 MDHVIYTAMGAARQTLEHQAVTANNLANASTPGFKAQLAALRSV--PIEGETLPTRTLTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G T LD A+ + A++ G TR+G +++ +G L+ G Sbjct: 59 ASTPGMDSRQGPMNYTSRPLDVAVGQGGFLAVQLDDGTEAYTRNGGIQMSPEGQLM-VQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 + +L + PI +P + E + G IS ++ +G L V G V R Sbjct: 118 R--MLMGENGPIDVPPQAE-LTIAADGAISALIASDPPTLLGQIGKLKIVKPEAGQVVRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + V + G LE SN N + M MI ++F +I Sbjct: 175 DDGLFHLTPQAREQQGNELAASTEVKIMPGVLEGSNVNPVESMVNMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 ++++ A + +A Sbjct: 235 HSSDENAQRANQILA 249 >gi|332187894|ref|ZP_08389627.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17] gi|332012055|gb|EGI54127.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17] Length = 251 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 94/247 (38%), Gaps = 17/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + S +A+NM+N T+GFR +V F + + A Sbjct: 1 MDKLVYTAATGMRSHMAAQSAIANNMANASTIGFRADRVVFDRIDLKGGGAAFEARMPTA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + G+ TG LD A+ AW A+++P G TR G +VT G L + Sbjct: 61 EEVTDADRAPGTVQHTGNPLDVAIATSSAWLAVQAPDGSEAYTRRGDLEVTASGVLQTGD 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---------QKGKVIATMGLYSVDMSQGF 169 G YPV+ PI +P + V G +S + +VI M L +SQ Sbjct: 121 G-YPVIGQNG-PITVPPYNS-LAVSPDGTVSIIPLGAGPDTQAQVIDRMKLADARVSQTV 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + L TV+ G LE SN N + MI + + L+ E Sbjct: 178 --KGLDNLLRVKGGGALPQDMDATVQSGALEGSNVNMAQTLVDMIENQRSYEVQANLMKE 235 Query: 230 NEKSMLE 236 KSM E Sbjct: 236 A-KSMDE 241 >gi|167463161|ref|ZP_02328250.1| flagellar hook-basal body protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 275 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 112/276 (40%), Gaps = 38/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ---KIS 57 M S + L+Q+L +A+N++N +TVG++ F E++ ++KN ++ Sbjct: 1 MNHSMINASVSMNGLQQKLDILANNIANINTVGYKRKDASFQEILKSVKNQPEKFQLPGR 60 Query: 58 FVASG----------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 SG + G +T LD ++GD F + T+ G F+ Sbjct: 61 MTPSGLQLGWGARLSQISSDFTQGPVENTQNSLDLMVQGDGMFEILVDGKPYWTKSGSFQ 120 Query: 108 VT----DDGS-LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGK---VIA 156 ++ + G L + G Y V + PI +P + + E+G + S+ G + Sbjct: 121 LSVMPGNQGLALTTKDGHY-VSGLNGEPIILPPNTQP-KIDEQGNVVAYSETGARPVQVG 178 Query: 157 TMGLYSVDMSQGFVRRENSGIS-----------PNIPPTPLEDLSGVTVKRGFLEDSNAN 205 + + ++ Q + + + +++ + V +G+LE SN N Sbjct: 179 RIRVVQIERPQLLEAVGENLYTLKAGIEKGQALRDAAGLTVQEQGKLKVMQGYLEQSNVN 238 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++I++ + F + + + SM+ N+ Sbjct: 239 LSDEMTELINVQRAFQLSSRAV-TSSDSMMGLANNL 273 >gi|226225712|ref|YP_002759818.1| flagellar basal-body rod protein FlgF [Gemmatimonas aurantiaca T-27] gi|226088903|dbj|BAH37348.1| flagellar basal-body rod protein FlgF [Gemmatimonas aurantiaca T-27] Length = 234 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 16/241 (6%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +A LE++ +A+N++N T GF+ F+ ++G D I Sbjct: 7 NNGLSSAASALQMLERKQQVLANNLANASTRGFKAE-TTFARMMGNQLAKADTAI----- 60 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ T LD ALEGD +F +++P G R+G F++ + L G Sbjct: 61 -----DLTPGTLTETHNSLDLALEGDGFFVVDTPAGERFVRNGNFRLDANRHLTDEQGN- 114 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 PVL I +PQ V G I+ GK + + V + P+ Sbjct: 115 PVLGENGA-ISLPQG--TIEVDATGLITVNGKPQQRLRVERVASGTDLEHEGGTRFIPDA 171 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + TVK+GFLE+SN N M M +M+ + ++ + + + A+ ++ Sbjct: 172 SRQVIPPTER-TVKQGFLEESNVNPMSAMTEMLTVLHRYGAAQQTLSTIDAVRGIAVTDL 230 Query: 242 A 242 A Sbjct: 231 A 231 >gi|51596012|ref|YP_070203.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis IP 32953] gi|153947059|ref|YP_001401289.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis IP 31758] gi|170024646|ref|YP_001721151.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis YPIII] gi|51589294|emb|CAH20915.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis IP 32953] gi|152958554|gb|ABS46015.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis IP 31758] gi|169751180|gb|ACA68698.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis YPIII] Length = 251 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 20/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAV--PIDGPSLATRTMVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +++ +G + + G Sbjct: 59 TSTPGVDISQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI +P + + G IS IA +G + V + G + Sbjct: 118 -YPLMGDNG-PIDVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVQATAGEMMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + V + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPETQQARGAQLPNDPLVKIMPGVLEGSNVKAVEAMTDMIANARSFEMQMKVI 234 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 235 QSVDEN-EQSANQL 247 >gi|218778847|ref|YP_002430165.1| hypothetical protein Dalk_0994 [Desulfatibacillum alkenivorans AK-01] gi|218760231|gb|ACL02697.1| Putative Flagellar basal-body rod protein FlgG or FlgF [Desulfatibacillum alkenivorans AK-01] Length = 228 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 19/226 (8%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 R +++N++N T GF+ ++ KN G TG Sbjct: 18 RFEVISNNLANVSTPGFKR------DIYALDKNSNPY---------TETDMSEGPVQHTG 62 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ELDF+++G+ +F + G+ TR GRF + D +V+A+G +L PI + D Sbjct: 63 NELDFSIQGEGFFEMLGENGLRYTRQGRFLLNADKEIVNAAGD-KLLSDRGDPIVVDGGD 121 Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVTVKR 196 ++ G + GK + T+ + + + + + + +S LE G V + Sbjct: 122 --LSLAPDGTLMVDGKELETIAVVNFENPKMLSKEGATYYVSEGGAGERLERPEGTIVNQ 179 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G+LE SN EM +M+ + + + ++ + +A+ + Sbjct: 180 GYLEQSNVIVPQEMVKMMESLRTYETFQKYMNTASEMDTKAVSEVG 225 >gi|186895115|ref|YP_001872227.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis PB1/+] gi|186698141|gb|ACC88770.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis PB1/+] Length = 251 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 20/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAV--PIDGPSLATRTMVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +++ +G + + G Sbjct: 59 TSTPGVDISQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI +P + + G IS IA +G + V + G + Sbjct: 118 -YPLMGDNG-PIDVPPQAA-VTIAADGTISALNAGDSPNAIAQLGQIKRVQATAGEMMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + V + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPETQQARGAQLPNDPLVKIMPGVLEGSNVKAVEAMTDMIANARSFEMQMKVI 234 Query: 228 DENEKSMLEAIRNI 241 +++ ++ + Sbjct: 235 QSVDEN-EQSANQL 247 >gi|255099439|ref|ZP_05328416.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-63q42] Length = 253 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 13/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M T F A A + +L +++N++N+D+ G++ I +++S++V + N Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLVDEVLNRPSYPTNGKD 60 Query: 54 -QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 + + + E G+ T ++ + A++G+ +F + G TR+G F V Sbjct: 61 ISTGTGAKATAPMRNYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYAYTRNGGFNVDAL 120 Query: 112 GSLVSASGKY--PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 G +V +G D V GE+ K I + LY +Q F Sbjct: 121 GKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNF 180 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + +S + ++ + V + +G+ E SN + E +I + F + I Sbjct: 181 ISEGDS-LFVATDAAQIKQVEKVDIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKGIKT 239 Query: 230 NEKSMLEAIRNIAS 243 ++ M + N+ + Sbjct: 240 ADE-MWQIANNLRA 252 >gi|253682153|ref|ZP_04862950.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] gi|253561865|gb|EES91317.1| flagellar basal body rod protein FlgG [Clostridium botulinum D str. 1873] Length = 262 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 104/260 (40%), Gaps = 20/260 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + A +L +++NM+N+ TVG++ + VKF++++ + + +S Sbjct: 1 MLRSIWNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQ 60 Query: 58 --------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 V S + G+ + T D A++G +F + G + TR G F + Sbjct: 61 GKLQVTGGGVKSTEIERDNAQGNLLQTNNNTDLAIDGKGYFKVVDGEGRTLYTRGGSFNI 120 Query: 109 TDDGSLVSASGKYPV-LDMASVPIQIPQKD---EIFNVGEKGEISQKGKVIATMGLYSVD 164 G++V +G V L+ + + + E FNV E G + + +Y Sbjct: 121 DPSGTVVDKNGNRLVILNENGIDVNTGRAGFTKESFNVSEDGYLRSDKHRGLRIPIYDTI 180 Query: 165 MSQGFVRRENSGISPNIPPTPLEDL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + +P I D+ ++ +GF E SN + EM +I + F Sbjct: 181 GDNSMKSIGENLYTPLIQGNGRNDVIESKDFSLLQGFTEQSNVDLGKEMTDLIVTQRAFQ 240 Query: 222 SITTLIDENEKSMLEAIRNI 241 ++ + ++ M N+ Sbjct: 241 LNSSALKTADE-MWGMANNL 259 >gi|293605004|ref|ZP_06687400.1| flagellar basal-body rod protein FlgF [Achromobacter piechaudii ATCC 43553] gi|292816609|gb|EFF75694.1| flagellar basal-body rod protein FlgF [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 60/251 (23%), Positives = 109/251 (43%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + +++NM+N +T GFR + V + ++S VA Sbjct: 1 MDRIIYTAMNGAARITEQQAAISNNMANVNTTGFREQIALYRSVPVTDGVSLPTRVSTVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 S S E+G+ +TG +LD AL + W A+++P+G TR G +V +G L ++ G Sbjct: 61 S-TPGNSFEMGNMQTTGRDLDVALSSERGWIAVQTPQGEAYTRGGSLQVGINGLLQTSLG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + PVL PI +P + + G I+ G + + L + + +Q + Sbjct: 120 Q-PVLSDQGGPIDVPDQAA-LTITSDGTITAIGAGDGPNNILNLGRIKLANPNNAQ--LV 175 Query: 172 RENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + G+ P + V G LE SN N M M MI ++F + Sbjct: 176 HGDDGVFRLAPVNGQPAPPAPADPSLRVLSGVLEGSNTNPMKAMVGMIENARRFEQQMQV 235 Query: 227 IDENEKSMLEA 237 I +++++ A Sbjct: 236 IQQSDRNAERA 246 >gi|323703190|ref|ZP_08114843.1| flagellar basal-body rod protein FlgF [Desulfotomaculum nigrificans DSM 574] gi|323531849|gb|EGB21735.1| flagellar basal-body rod protein FlgF [Desulfotomaculum nigrificans DSM 574] Length = 257 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 109/259 (42%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVG---------AI 48 M I + + + +L+ +A+N++N T G++ V F+ + Sbjct: 1 MLRGLYIAMNSMDVQQAKLNNIANNLANLATPGYKKTNVVVDKFAATLQLAVEANGPKGK 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 + I + G+ TG+ D AL+G+ +FA+E P G + TRDG F Sbjct: 61 REPIGAGNLGNMVARVSTDFSPGALTETGSPTDLALDGNGFFAVEGPNGEQLYTRDGSFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSV 163 + +G+L+++ G Y VL PI I + V E G I + + + L Sbjct: 121 LDAEGNLLTSDG-YKVLGEGG-PITI-GDAKHVTVKENGTIVVGQGEEMTEVDKLQLVEF 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + E + + P + + V +G+LE +N + + EM +I T+ + S Sbjct: 178 ADPSRLQKAEGNYFA--DPQGTGQPAATTRVSQGWLEKANVDPVQEMINIIPATRIYESS 235 Query: 224 TTLIDENEKSMLEAIRNIA 242 L+ +++ + ++I + Sbjct: 236 QRLVQISDELLDKSINQVG 254 >gi|308071138|ref|YP_003872743.1| flagellar basal body rod protein [Paenibacillus polymyxa E681] gi|305860417|gb|ADM72205.1| Flagellar basal body rod protein [Paenibacillus polymyxa E681] Length = 275 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 111/278 (39%), Gaps = 38/278 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S + + +++QRL +ADN++N +TVG+++ + F +V+ ++ + Sbjct: 1 MNNSMIGAMVSMASVQQRLDLIADNIANINTVGYKSKQGSFEDVLANVQQQPSTYLQNGR 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V + + E G TG D A++G+A F ++ TRDG F Sbjct: 61 AMPLGYNLGYGVKTAAIMKNMEQGPLKETGLPTDLAIQGNAMFEVQGNGQKAWTRDGSFH 120 Query: 108 V------TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA----- 156 + L +A G Y VLD VP+ P + + GE+ + Sbjct: 121 FVPDPNDSATMMLTTAEG-YSVLDNNDVPVTAPAGSK-VAISSDGELLIRANGTGAPTVG 178 Query: 157 -TMGLYSVDMSQGFVRRENSGI----------SPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 + L V +G +R+++ + V+V+ G+LE+SN + Sbjct: 179 QRIKLMDVQRPEGLEQRDDNLFVLLNGVTEANVFGAAGVAGAVPADVSVRSGYLEESNVD 238 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM M+ + + + + + +M+ N+ + Sbjct: 239 LAGEMTDMMQVQRMYQMAARAL-TSSDTMMNLANNLRA 275 >gi|114777904|ref|ZP_01452818.1| hypothetical protein SPV1_05764 [Mariprofundus ferrooxydans PV-1] gi|114551691|gb|EAU54243.1| hypothetical protein SPV1_05764 [Mariprofundus ferrooxydans PV-1] Length = 247 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 121/248 (48%), Gaps = 11/248 (4%) Query: 1 MQTSFNI-GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID----QK 55 M + I G+A Q+A + +L +A N++N ++VG+ + FS + + Sbjct: 1 MNLGYYISGVAGQMA-QNKLDGIAHNLANVNSVGYMEDRTSFSSMFSGKMSREGVPSKTS 59 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 +++ + +Y+S + G+ T +LDF++ GD +F ++ G LTR G FK+ +G+L Sbjct: 60 AAYLTASTQYVSTQAGNIRQTNNDLDFSVHGDGYFRIQMKDGTEALTRAGNFKLDAEGNL 119 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 ++ SG VLD PIQ+P + + G + G+ +A +G+ + S+ + Sbjct: 120 LNQSG-LAVLDKNGGPIQLP--VGKISATDNGSLYVNGQPVAELGISMIKDSRQIQKVAG 176 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 I + S ++V +G LED+N NS+ M Q++ + + S+ + ++ + Sbjct: 177 VLIRTGQDNIQPANGS-ISVHQGELEDANVNSVLAMTQIVDTMRNYQSMMKVAEQYNQLS 235 Query: 235 LEAIRNIA 242 + + Sbjct: 236 SQLSDRVG 243 >gi|271500067|ref|YP_003333092.1| flagellar basal-body rod protein FlgF [Dickeya dadantii Ech586] gi|270343622|gb|ACZ76387.1| flagellar basal-body rod protein FlgF [Dickeya dadantii Ech586] Length = 251 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + + NM+N T GFR V I+ ++ + V Sbjct: 1 MDHAIYTAMGAASQTLEQQAVTSHNMANASTPGFRAQLAAMRAV--PIQGVTNETRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS TG +D AL D W A+ + G TR+G ++ +G L + G Sbjct: 59 SSTPGVDTTPGSMDYTGRSMDVALSQDGWLAVRAADGSEAYTRNGNMEINSNGQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMG-LYSVDMSQGFVRRE 173 + D PI++P + + +G G I S + +G L V + V R Sbjct: 118 NLVMGD--GGPIEVPPQTQ-LTIGPDGTINALNPSDAANTVTQIGRLKLVKATANEVVRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G P L++ + V V G LE SN N++ M +MI +++F +I Sbjct: 175 DDGFFRVSPAVQQQRGAVLQNDATVRVMPGVLEGSNVNTVESMVEMISNSRRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 + + A + +A Sbjct: 235 SSVDDNTQRANQILA 249 >gi|304310886|ref|YP_003810484.1| Flagellar basal body rod protein [gamma proteobacterium HdN1] gi|301796619|emb|CBL44831.1| Flagellar basal body rod protein [gamma proteobacterium HdN1] Length = 245 Score = 179 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M I + T A+N++N T GF+ ++ + + + Sbjct: 1 MDKGLYISMTGAREALLSQDTHANNLANASTTGFKADYQQYRSM--QVFGSYYPSRVYAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G++++TG LD A+ G W A+ G TR G + +G+LV+ SG Sbjct: 59 TERPGTDMRGGNYMTTGRNLDVAVRGKGWIAVLDAEGKEAFTRAGDLERDLNGTLVTGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 V+ PI +P+ + VG G IS + + + L + D + Sbjct: 119 -LAVMGNDG-PIVLPEY-QKIEVGMDGSISVRALGEDALGMVEVNRIRLVNPDPKA--LE 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ + E + V + G LE SN N + E+ +I ++ ++ + Sbjct: 174 KGEDGLFRMRDGSEPEASAEVALANGMLESSNVNPVSELTSVITSSRLMELNVKMLATYK 233 Query: 232 KSMLEAIRNI 241 ++ A R + Sbjct: 234 ENDQVAARIL 243 >gi|255322393|ref|ZP_05363539.1| flagellar basal-body rod protein [Campylobacter showae RM3277] gi|255300766|gb|EET80037.1| flagellar basal-body rod protein [Campylobacter showae RM3277] Length = 270 Score = 179 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 28/268 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDID---- 53 M + A + RL +A+N++N +T+GF+ V F + ++++ Sbjct: 1 MNNGYYQATGAMVTQFNRLDVIANNLANINTIGFKRDDVVVGDFERIFKEYRDELPIENH 60 Query: 54 ----------QKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALE-SPRGIILT 101 ++Y+ G + +LDFA++ D +F +E P + LT Sbjct: 61 TKDAAKFLNRTIDRVPQISEQYVDFSQGGLKFSNNDLDFAMKREDLFFLVEVKPGDVRLT 120 Query: 102 RDGRFKVTDDGSLVSASGKYPVLD-----MASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 ++G F + +DG LV+ G Y VL IQIPQ E F+ + G + + +A Sbjct: 121 KNGSFNLDEDGFLVTKEG-YKVLPSDYFTNNFQGIQIPQG-ERFSADKNGNLYSNEEPLA 178 Query: 157 TMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + + + + ++ + PN+ V + + SN N++ EM +I Sbjct: 179 RLYIAQPKEIRNLTKEGDNLYVLPNLKELEDVGGEIDAVAWKYTQISNVNAVTEMVGLIE 238 Query: 216 LTQKFNSITTLIDENEKSM-LEAIRNIA 242 + ++ + + EAI +A Sbjct: 239 TQRFVEMYQKVMTSHMDDLNQEAISKLA 266 >gi|332533174|ref|ZP_08409043.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas haloplanktis ANT/505] gi|332037456|gb|EGI73910.1| flagellar basal-body rod protein FlgF [Pseudoalteromonas haloplanktis ANT/505] Length = 244 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 11/234 (4%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 I + Q L+ A+N++N +T GF+ + + A + ++ F + Sbjct: 3 YIAASGAKQSLQGLALKANNLANANTTGFKADFAQARSM-QAFGEGLPTRV-FSMQERPG 60 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL 124 + G + TG +LD A+ +AW A++ G T+ G VT G LV++ G+ V+ Sbjct: 61 SNMVSGGIVQTGRDLDIAMSDNAWLAVQDASGNEAYTKVGTLNVTAQGMLVTSHGR-QVI 119 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD------MSQGFVRRENSGIS 178 P+ +P E + G I + + L +D + + + N G+ Sbjct: 120 GEGG-PVILPVPVEKIGFSQDGAIQVRPQGAPANFLEEIDTLRVVEANSSQLEKGNDGLF 178 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ++ + V V G LE SN N ++EM MI ++F L+ E+ Sbjct: 179 RPKANVTVDTSANVKVLSGSLEMSNVNPVHEMVDMISHQRQFELQVKLMKTAEE 232 >gi|256376465|ref|YP_003100125.1| hypothetical protein Amir_2339 [Actinosynnema mirum DSM 43827] gi|255920768|gb|ACU36279.1| protein of unknown function DUF1078 domain protein [Actinosynnema mirum DSM 43827] Length = 276 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 98/273 (35%), Gaps = 34/273 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A +Q + +N+SN +T GF++ + F + + Sbjct: 1 MLRSLFSGISGLRAHQQMMDVTGNNISNVNTTGFKSSQTVFEDTLSQTLRAAQAAGANTA 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q V + + G+ STG D ++GD +F + S + TR G Sbjct: 61 ATNPAQVGLGVRTAGINTNFNQGTTQSTGRNTDMLIQGDGFFVVNSSGQQLYTRAGALSF 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKD------------EIFNVGEKGEI-----SQK 151 G L + +G MA+ + + F+V G I + Sbjct: 121 DAAGQLTTPAGGILQGWMANGAGVVDKNQPVAGLTVDKGTYTSFSVSGDGTIVGVLANGT 180 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANS 206 + + + + + G + S + P++ D V G LE SN + Sbjct: 181 PRTVGQIAMANFANPGGLDKAGGSFYRATVNSGPVQIGGAGDNGTGAVVSGALEMSNVDL 240 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +I + F + + +I +++ + + + Sbjct: 241 SQEFTNLIIAQRGFQANSKVITSSDEILQDLMN 273 >gi|150019058|ref|YP_001311312.1| flagellar basal body rod protein FlgG [Clostridium beijerinckii NCIMB 8052] gi|149905523|gb|ABR36356.1| protein of unknown function DUF1078 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 255 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 115/256 (44%), Gaps = 17/256 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M F + A +++L +++++ N T G+++ V F +++ + + Sbjct: 1 MFNIFATAKSGMNAYQEKLDYLSNDLVNISTTGYKSTDVNFKDLLTESLDRRGTPLVEKK 60 Query: 57 ----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 + V G Y + + G+ ++TG + D A++G +FAL G I+ TRDG FK+ + Sbjct: 61 AITGTGVKLGVNYANNKQGNLLTTGGKTDLAIDGKGYFALSKEDGSIVYTRDGNFKIDSN 120 Query: 112 GSLVSASGK--YPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV--IATMGLYSVDM 165 G+LV ++G Y + + E ++ + G IS G+V I T+ +++ Sbjct: 121 GALVDSNGTKVYVQYENGASEGNPALDREKMSIDKDGGISMEVDGQVAKIGTIPIFTAIG 180 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + F+ NS P+ + S +++G LE SN ++ ++ + F + Sbjct: 181 DKSFIPIGNSYFVPSSDAQ-VTLSSNYNIEQGMLEGSNVDAGETFSDIVLTQRAFQLSSK 239 Query: 226 LIDENEKSMLEAIRNI 241 + + + I N+ Sbjct: 240 AVTTADD-LWSMINNM 254 >gi|317406200|gb|EFV86449.1| flagellar basal-body rod protein FlgF [Achromobacter xylosoxidans C54] Length = 253 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 107/249 (42%), Gaps = 15/249 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + +++NM+N +T GFR + V + ++S VA Sbjct: 1 MDRIIYTAMNGAARITEHQAALSNNMANVNTPGFREQIALYRSVPVNDGVSLPTRVSTVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 S + E+G+ +TG +LD AL + W A+++P+G TR G +V +G L ++ G Sbjct: 61 S-TPRNNFEMGNMQTTGRDLDVALASSNGWIAVQTPQGEAYTRAGSLQVGVNGLLQTSLG 119 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRE 173 + PV+ + I +P + + G I+ G ++ + + + + Sbjct: 120 Q-PVMSDQNGIIDVPDQAA-LTITSDGTITAIGAGDAPNNILNLGRIKLANPPEAQLVHG 177 Query: 174 NSGISP-----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + G+ P P+ + V G LE SN N M M MI ++F ++ Sbjct: 178 DDGVFRLAPVNGQPAPPVPADPSLRVLSGVLEGSNTNPMAAMVGMIENARRFEQQMQVVQ 237 Query: 229 ENEKSMLEA 237 + +++ A Sbjct: 238 QADRNAERA 246 >gi|329928728|ref|ZP_08282577.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] gi|328937509|gb|EGG33927.1| flagellar hook-basal body protein [Paenibacillus sp. HGF5] Length = 296 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 61/291 (20%), Positives = 116/291 (39%), Gaps = 51/291 (17%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV-----GAIKNDID 53 + + EQR +TV N++N +T G++ ++ F EV+ G ++ Sbjct: 5 LRGLYTAASGMMTQEQRHNTVTQNIANVNTTGYKATNSVQRSFPEVLVSMIGGNESSNAG 64 Query: 54 QKISFVASGK----EYLSKEVGSFISTGTELDFAL------------------------- 84 +K+ +G G+ T DFAL Sbjct: 65 RKLGKFNTGVYAEESISLYTEGALRETNKTTDFALVSSFTVQNPATGQAYPFDASGRYVD 124 Query: 85 -EG------DAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK 136 G + +F +++ G + TR+G F+V+ +G+L+S SG Y VLD + PI + Sbjct: 125 ENGEVIYRPEGFFTVQNENGDVRYTRNGSFRVSPEGNLLSESG-YQVLDNNNRPIVLTGP 183 Query: 137 DEIFNVGEKGEI-SQKGKVIATM-GLYSVDMSQGFVRRENSGISPNIPPTPL---EDLSG 191 F V E+GEI G+ + G+ V G +R + P + Sbjct: 184 ASDFTVNEQGEIMDAAGRGTGIILGVSIVSQPHGLIREGHGVFRMADPDGEVRFMTPADN 243 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V++GF+E SN + M ++ + + + ++ ++++ +A+ I Sbjct: 244 GVVRQGFIEGSNVDPTQSMVELTAALRAYETNQKIVQYYDRTLEKAVNEIG 294 >gi|126697841|ref|YP_001086738.1| flagellar basal body rod protein FlgG [Clostridium difficile 630] gi|255305297|ref|ZP_05349469.1| flagellar basal body rod protein FlgG [Clostridium difficile ATCC 43255] gi|115249278|emb|CAJ67091.1| Flagellar basal body rod protein FlgG [Clostridium difficile] Length = 253 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 13/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M T F A A + +L +++N++N+D+ G++ I +++S++V + N Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLVDEVLNRPSYPTNGND 60 Query: 54 -QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 + + + E G+ T ++ + A++G+ +F + G TR+G F V Sbjct: 61 ISTGTGAKATAPMRNYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYAYTRNGGFNVDAL 120 Query: 112 GSLVSASGKY--PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 G +V +G D V GE+ K I + LY +Q F Sbjct: 121 GKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNF 180 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + +S + ++ + V + +G+ E SN + E +I + F + I Sbjct: 181 ISEGDS-LFVATDAAQIKQVEKVDIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKGIKT 239 Query: 230 NEKSMLEAIRNIAS 243 ++ M + N+ + Sbjct: 240 ADE-MWQIANNLRA 252 >gi|238758109|ref|ZP_04619289.1| Flagellar basal-body rod protein flgF [Yersinia aldovae ATCC 35236] gi|238703647|gb|EEP96184.1| Flagellar basal-body rod protein flgF [Yersinia aldovae ATCC 35236] Length = 251 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + A+N++N T GFR + I + VA Sbjct: 1 MDHAIYTAMGAARQSLEKQAVTANNLANVATPGFRAQLTAMRAI--PIDGPSLMTRTMVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + ++ G+ +G LD AL+ D + A++ P G TR+G +++ +G + + G Sbjct: 59 ASTPGVNISQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQISSNGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI++P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIEVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVKATAGEVMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + + + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPATQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMTDMIANARSFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|229917023|ref|YP_002885669.1| flagellar basal body rod protein [Exiguobacterium sp. AT1b] gi|229468452|gb|ACQ70224.1| flagellar basal body rod protein [Exiguobacterium sp. AT1b] Length = 257 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 108/258 (41%), Gaps = 27/258 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDIDQKIS 57 M A AL+++ +++N+ N T GF+ F E++ A ++ D S Sbjct: 1 MLRGLYTAAGAMNALQRQQEILSNNLGNVRTPGFKASDGVVRSFPEMLLAQVSNPDNAKS 60 Query: 58 FVASGKEYLS-----------KEVGSFISTGTELDFALE------GDAWFALESPRGIIL 100 V LS GS +G+ D L+ G FA+E + Sbjct: 61 RVKGEVGTLSMGVYLQETMPRFSAGSITESGSPTDLYLKAPTDFTGAPMFAVEQGGETLY 120 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 T +GRF + + L SA G Y +L IQ+P F VG+ G I+ G+ +AT+G Sbjct: 121 TTNGRFSIDEALFLRSADGGY-ILSDEGERIQLP--SSEFQVGKDGVITSLGQNVATLGA 177 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 Y +D + N P P + V V +GF+E++N N M ++ ++F Sbjct: 178 YQIDDLTTLEQVGNDWRVTGDAPAPAQ----VEVLQGFIEEANVNLDQTMADLMMTYRQF 233 Query: 221 NSITTLIDENEKSMLEAI 238 + ++ +KS AI Sbjct: 234 EANQKVVQAYDKSAERAI 251 >gi|183598618|ref|ZP_02960111.1| hypothetical protein PROSTU_02018 [Providencia stuartii ATCC 25827] gi|188020797|gb|EDU58837.1| hypothetical protein PROSTU_02018 [Providencia stuartii ATCC 25827] Length = 251 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 96/255 (37%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + V++N++N T GF+ V I D +Q + V Sbjct: 1 MDHVIYTAMGGARHALENQAIVSNNIANVSTSGFKAQLAAMRAV--PIHGDSEQTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG +D AL + A+E G TR+G +++ DG LV G Sbjct: 59 ASTPGADMSQGPLNYTGRPMDVALNDKHFLAVELADGSEAYTRNGNIQISPDGELVI--G 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSV--DMSQGFVRR 172 + + PI +P E +GE G ++ ++ +G V Q +R Sbjct: 117 ERRLQGDGG-PINVPPNAE-LTIGEDGTVTALLATDPPTMLGQIGRLKVVEAQPQDLIRG 174 Query: 173 ENSGI-----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 E+ + L +V G +E SN N+ M MI + F ++ Sbjct: 175 EDGLFHLSPQAAAANGNGLAQSERASVTSGVIEGSNVNAAEAMVSMIANARYFEMQMKVV 234 Query: 228 DENEKSMLEAIRNIA 242 +++ +A + +A Sbjct: 235 RSADENAQKANQLLA 249 >gi|218689030|ref|YP_002397242.1| flagellar basal body rod protein FlgF [Escherichia coli ED1a] gi|218426594|emb|CAR07422.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli ED1a] Length = 251 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTANNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQARRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|37525842|ref|NP_929186.1| flagellar basal-body rod protein FlgF (putative proximal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785271|emb|CAE14212.1| Flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 251 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A+N++N T GF+ V ++ + V Sbjct: 1 MDHVIYTAMGGARQTLEHQAVTANNLANASTPGFKAQLAALRAV--PVEGAAFNTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD A+ + A++ G TR+G +++ +G L + G Sbjct: 59 ASTPGSDNRQGPMNYTSRPLDVAIGQGGYLAVQLEDGSEAYTRNGSIQISAEGQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 + D PI IP + E + G IS + +G L V + R Sbjct: 118 NLLMGDNG--PINIPPQAE-LTLATDGSISALIPGDPPTQLGQLGRLKMVKPESDQLVRG 174 Query: 174 NSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ + L V + G LE SN N M M MI ++F +I Sbjct: 175 DDGLFHMTEQAQGLQGDVLPASDEVKLMPGVLEGSNVNPMESMVSMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 ++++ A + +A Sbjct: 235 HSSDENAQRANQLLA 249 >gi|329849713|ref|ZP_08264559.1| flagellar basal-body rod protein FlgF [Asticcacaulis biprosthecum C19] gi|328841624|gb|EGF91194.1| flagellar basal-body rod protein FlgF [Asticcacaulis biprosthecum C19] Length = 249 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 36/262 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV--------GFRTIKVKFSEVV------- 45 M + I L+ QL L + L G++ F +++ Sbjct: 1 MDNASYIALSRQLTLRRELD--------ISANNMANMNTNGYK-----FEQLLVHQEYGA 47 Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTRDG 104 A I +F + G+F TG LDFA++GD +F +++ G TRDG Sbjct: 48 PAYNAPIRTPANFAYDNEVGRDFSQGTFQITGAPLDFAIDGDGVFFTVQTADGEAYTRDG 107 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATMGL 160 F + +G L++ G YPV+ PI + K V E G I+Q + + + L Sbjct: 108 AFTMNAEGMLMTQDG-YPVVGDGG-PITMDPKKGQPAVSEDGIITQDYQGQAERVGKLNL 165 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + N + TP+ + V++GFLE SN N M E+ ++I + + + Sbjct: 166 VRITDMSDLKKAGNGTYTLTSNATPVPA-TDARVRQGFLEASNVNPMIEVTKLIEINRAY 224 Query: 221 NSITTLIDENEKSMLEAIRNIA 242 ++ +I + A+ + Sbjct: 225 TTLAGIIQQQHDLNKSAVERLG 246 >gi|160901818|ref|YP_001567399.1| flagellar basal body rod protein [Petrotoga mobilis SJ95] gi|160359462|gb|ABX31076.1| flagellar basal body rod protein [Petrotoga mobilis SJ95] Length = 240 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 23/247 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----------GAIKND 51 A L L+++++N++N +TVG++ F V Sbjct: 1 MKGIYNATAGMLNSFAELNSISNNLANLNTVGYKKDFNLFKSVYEKEIRSYQNAQGKGEP 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 I S V + + E G + T +LDFA+EGD +F +E TR+G F ++ + Sbjct: 61 IGNIYSSVVLDEVIPNLEQGPLVETSGKLDFAIEGDGFFKIERNGNYFYTRNGEFSLSPE 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 LV+ SG Y VLD + PI + + F V E+G IS + + + + + Sbjct: 121 NYLVTKSGDY-VLDEENNPILVDLDN--FFVDEEGNISGTNTRLNILNV------ENLNK 171 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + + +++GFLE SN +++ EM +MI +KF+ + + + Sbjct: 172 YGENYFTGEELGQAG----NFNMRQGFLESSNVDALNEMIKMIEANRKFDILQKAVLTGD 227 Query: 232 KSMLEAI 238 + I Sbjct: 228 SLNAKLI 234 >gi|238793999|ref|ZP_04637617.1| Flagellar basal-body rod protein flgF [Yersinia intermedia ATCC 29909] gi|238726631|gb|EEQ18167.1| Flagellar basal-body rod protein flgF [Yersinia intermedia ATCC 29909] Length = 251 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLEQQAVTANNLANASTPGFRAQLSAMRAV--PIDGPSMATRTMVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +V +G + + G Sbjct: 59 ASTPGVDISQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI++P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIEVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVRANAGEVMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + + + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPATQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMTDMIANARSFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|225158947|ref|ZP_03725259.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] gi|224802442|gb|EEG20702.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] Length = 261 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 22/261 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV--------KFS---------E 43 M A+ ALE+ V N+S++ T F+ V +F Sbjct: 1 MNIGIYQNAASLNALERWQDVVTQNISSSQTAAFKRRTVQVTGNYSGEFQLPRPTAFAPA 60 Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTR 102 GA + D + + +S G T ELD AL GD +F + G I+ TR Sbjct: 61 HPGATGSSGDTRRAVFPLTNINISLTPGEAQPTRGELDIALPGDGFFKVRDASGVILYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV--GEKGEISQKGKVIATMGL 160 G +++ + +LV+A G VL A PIQ+ + ++ + G ISQ +I +G+ Sbjct: 121 AGSLQISPERTLVTAQG-MDVLSDADTPIQLETESTTSSLVFNDDGTISQGETIIGRLGI 179 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + G+ P + + V +G++E SN + + EM +I +++ + Sbjct: 180 VTFANPT-LLTPISGGLFTAPPAAGPQQMDEPGVIQGYIESSNVSQLREMVDLITISRAY 238 Query: 221 NSITTLIDENEKSMLEAIRNI 241 + +I + ++ + + + Sbjct: 239 EANQKMIQSRDDTIGKTLEAL 259 >gi|94495410|ref|ZP_01301990.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] gi|94424798|gb|EAT09819.1| flagellar basal-body rod protein [Sphingomonas sp. SKA58] Length = 247 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 16/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N L A R +++A+N++N +TVGFR I+ + + + Sbjct: 1 MDRLVNTALTAMRGAMARQASIANNLANANTVGFRAEIANAET--RWIQGESFDTRAQAS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ TG LD AL+GDA +++ G TR G KV+D G L + G Sbjct: 59 EQVIAADMAQGAVTETGNPLDVALDGDALLTVQATDGSEAYTRRGDLKVSDSGLLTTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 PVL P+ +PQ D ++ + G I + + + L + S + Sbjct: 119 -LPVLGEGG-PVILPQMDS-VSIAKDGSIWGVPQGGDPANPQQVDKLKLVNAAGSS--IA 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + N G+ + L TV G LE SN NS + MI ++ + + +ID + Sbjct: 174 KGNDGLFREVNGGALPSDPLATVTSGSLEGSNVNSTQALIDMIEASRAWETQVKMIDTAK 233 Query: 232 K 232 + Sbjct: 234 Q 234 >gi|331269339|ref|YP_004395831.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] gi|329125889|gb|AEB75834.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] Length = 262 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 20/260 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + A +L +++NM+N+ TVG++ + VKF++++ + + +S Sbjct: 1 MLRSIWNSRSGMAAEMDKLDAISNNMANSTTVGYKRVDVKFNDLMQENLDRLGYPVSKGQ 60 Query: 61 SGKEYL-----------SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 ++ G+ + T D A++G +F + G TR G F + Sbjct: 61 GKRQVTGSGVKSTELERDNAQGNLLQTNNNTDLAIDGKGYFKVVDGTGRTFYTRGGSFNI 120 Query: 109 TDDGSLVSASGK-YPVLDMASVPIQIPQKD---EIFNVGEKGEISQKGKVIATMGLYSVD 164 G++V +G +L+ + + F V E G I + +Y Sbjct: 121 DPSGTVVDKNGNKLVILNENGTDVNKTGAGFTKDSFKVSEDGYIWSDKHRGFRIPIYDTI 180 Query: 165 MSQGFVRRENSGISPNIPPTPLEDL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + P D+ ++ +GF E SN + EM +I + F Sbjct: 181 GDNSMKSIGENLYVPLTQGNGRNDVIESKDFSLLQGFTEQSNVDLGKEMSDLIITQRAFQ 240 Query: 222 SITTLIDENEKSMLEAIRNI 241 ++ + ++ M N+ Sbjct: 241 LNSSALKTADE-MWGMANNL 259 >gi|123442783|ref|YP_001006760.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089744|emb|CAL12597.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 251 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 102/255 (40%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR+ V I + V Sbjct: 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRSQLAAMRAV--PIDGPSMATRTMVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + GS +G LD AL+ D + A+ P G TR+G +++ DG + + G Sbjct: 59 ASTPGVDISQGSMNYSGRPLDVALQQDGYLAVRLPDGTEAYTRNGNIQISADGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI++P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIEVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVRATAGEVMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + + + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPETQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMADMIANARSFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|253990126|ref|YP_003041482.1| flagellar basal-body rod protein flgf [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781576|emb|CAQ84739.1| flagellar basal-body rod protein flgf (putative proximal rod protein) [Photorhabdus asymbiotica] Length = 251 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A+N++N T GF+ V ++ + V Sbjct: 1 MDHVIYTAMGGARQTLEHQAVTANNLANASTPGFKAQLAALRAV--PVEGAAFNTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD A+ + A++ G TR+G +++ DG L + G Sbjct: 59 ASTPGSDNRQGPMNYTARPLDVAIGQGGYLAVQLEDGSEAYTRNGSIQISADGQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 +L + PI +P + E + G IS ++ +G L V + R Sbjct: 118 N--LLMSENGPIDVPPQAE-LTLAADGSISALVAGDPPTLLGQLGKLKMVKPEDNQLVRG 174 Query: 174 NSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ + + L V + G LE SN N M M MI ++F +I Sbjct: 175 DDGLFHMTEQARELQGDVLPASDEVKLMPGTLEGSNVNPMESMVSMIDNARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 ++++ A Sbjct: 235 HSSDENAQRA 244 >gi|254973936|ref|ZP_05270408.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-66c26] gi|255091322|ref|ZP_05320800.1| flagellar basal body rod protein FlgG [Clostridium difficile CIP 107932] gi|255312980|ref|ZP_05354563.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-76w55] gi|255515739|ref|ZP_05383415.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-97b34] gi|255648833|ref|ZP_05395735.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-37x79] gi|260682050|ref|YP_003213335.1| flagellar basal body rod protein FlgG [Clostridium difficile CD196] gi|260685648|ref|YP_003216781.1| flagellar basal body rod protein FlgG [Clostridium difficile R20291] gi|260208213|emb|CBA60571.1| putative flagellar basal-body rod protein [Clostridium difficile CD196] gi|260211664|emb|CBE01933.1| putative flagellar basal-body rod protein [Clostridium difficile R20291] Length = 253 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 103/254 (40%), Gaps = 13/254 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M T F A A + +L +++N++N+D+ G++ I +++S++V + N Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLVDEVLNRPSYPTNGND 60 Query: 54 -QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 + + E G+ T ++ + A++G+ +F + G TR+G F + Sbjct: 61 ISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYAYTRNGGFNIDGL 120 Query: 112 GSLVSASGKY--PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 G +V +G D V GE+ K I + LY +Q F Sbjct: 121 GKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNKKIGKINLYQPIGTQNF 180 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + +S + ++ + V + +G+ E SN + E +I + F + I Sbjct: 181 ISEGDS-LFVATDAAQIKQVEKVDIVQGYRERSNVSLQEEFVDLIATQRAFQMNSKGIKT 239 Query: 230 NEKSMLEAIRNIAS 243 ++ M + N+ + Sbjct: 240 ADE-MWQIANNLRA 252 >gi|219670133|ref|YP_002460568.1| hypothetical protein Dhaf_4123 [Desulfitobacterium hafniense DCB-2] gi|219540393|gb|ACL22132.1| protein of unknown function DUF1078 domain protein [Desulfitobacterium hafniense DCB-2] Length = 329 Score = 177 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 105/328 (32%), Gaps = 89/328 (27%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 N A + L + +NMSN +T G++ +V F+E + A +++ + Sbjct: 1 MRILNTAATGVRAQQTALDVLGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQPV 60 Query: 62 GKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKV 108 G+ G T D A++G+ +F + + G TR G F++ Sbjct: 61 GERIDVGAGVIYPTIDTDYRQGIIRETENPFDLAIDGEGFFPVRTANGESRYTRVGNFEL 120 Query: 109 TDDGSLVSASG--------------------------------------------KYPV- 123 G LV++ G YPV Sbjct: 121 DSQGKLVNSDGYILEVKIPADAMDLYVDETGNITGFIDDEERVLGRVVVNDPEGEGYPVG 180 Query: 124 ---LDMASVPI-----------QIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDM 165 +D P+ +P+ E + +G I + + + + + Sbjct: 181 PIDMDELGRPLDWNGDILPTAFAVPEGAEDVQISTEGILSATIDGSRQTLGQINIITFAN 240 Query: 166 SQGFVRRENSGISP------------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 +G VR ++ P + +E+ + +K LE SN N M +M Sbjct: 241 PEGLVRDGDNLYFAPDAAGVTGDELVGTPGSQVEERTLGKLKTQSLEQSNVNLASAMTEM 300 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 I + + + +I N M ++ Sbjct: 301 IQVQRAYQLNARMI-TNGDQMWSMANSL 327 >gi|242238970|ref|YP_002987151.1| flagellar basal body rod protein [Dickeya dadantii Ech703] gi|242131027|gb|ACS85329.1| flagellar basal body rod protein [Dickeya dadantii Ech703] Length = 251 Score = 177 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + S + +N++N T GFR V + + Sbjct: 1 MDHAIYTAMGAASQTLDQQSVITNNLANASTPGFRAQLSAMRAV--PVDGPTLPTRTLSI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G T LD A++ D W A++ P G TR+G ++ G L + G Sbjct: 59 ASTPGADMSQGPLDYTSRPLDVAVQNDGWLAVQLPNGEEAYTRNGSIQIDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 +PV+ A P+ +P + + G ++ G +A +G L V + R Sbjct: 118 -FPVVGDAG-PLVVPTQAS-ITISANGTVASLGDGDSPNTVAQVGALKLVKGDSTQLVRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L V V G LE SN N++ + MI ++F +I Sbjct: 175 DDGLFHVSPAASQQVGNALPADPTVRVMPGVLEGSNVNTVESLVDMIGSARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 +++ A Sbjct: 235 ASVDQNAESA 244 >gi|160939651|ref|ZP_02086999.1| hypothetical protein CLOBOL_04543 [Clostridium bolteae ATCC BAA-613] gi|158437442|gb|EDP15206.1| hypothetical protein CLOBOL_04543 [Clostridium bolteae ATCC BAA-613] Length = 244 Score = 177 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 19/246 (7%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVASGKEYLSKE 69 A ++ L ++NM+N T G+++++ F++++ + Q V + + + Sbjct: 1 MNAFQKDLDVTSNNMANISTNGYKSMRSSFNDLLYTQMDMRPQAQVGHGVRNDGPGTTFQ 60 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKV---TDDGSLVSASGKYPV 123 G F T ELDFA+ G+A+FA+++ TRDG F++ D L ++ G Y V Sbjct: 61 QGIFRKTDRELDFAISGNAFFAIQTSEDEEEPAYTRDGAFQISSTDDGNYLTTSDGSY-V 119 Query: 124 LDMASVPIQIPQKDEIFNVGEK-GEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 LD PI++ K GE+ G ++ +GL+ + +G + Sbjct: 120 LDQDGEPIELEYKTSEDGGDNDAGELDLDG-LVERIGLFVCENPEGLQHVGMNLFRTGET 178 Query: 183 PTP-------LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 ++ LE SN N EM ++ + F + ++ ++ M Sbjct: 179 SGEWLSMDDLDDEQEKSKAMSHALEMSNCNMSTEMVNLMQTQRAFQLNSRIVTTADQ-ME 237 Query: 236 EAIRNI 241 E I N+ Sbjct: 238 EMINNL 243 >gi|156934439|ref|YP_001438355.1| flagellar basal body rod protein FlgF [Cronobacter sakazakii ATCC BAA-894] gi|156532693|gb|ABU77519.1| hypothetical protein ESA_02270 [Cronobacter sakazakii ATCC BAA-894] Length = 252 Score = 177 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 21/255 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + S A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQSVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 + ++ GS T LD A++G D W A+++P G TR+G + T G L + Sbjct: 59 ASTPGVNMSQGSLDYTSRPLDVAIQGSDGWLAVQAPDGTEAYTRNGNIQRTATGQL-TIQ 117 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRR 172 G PV+ P+ +P+ E + G IS IA +G L V S V R Sbjct: 118 GN-PVMGEGG-PVVVPEGAE-VTIAADGTISVLNPGDAPNTIAPVGRLKMVKASAKEVVR 174 Query: 173 ENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + G+ L+ VT+ G LE SN + M MI ++F + Sbjct: 175 GDDGLFRLNQQAQTARGATLQADPTVTLMSGVLEGSNVKPVEAMTDMIANARRFEMQMKI 234 Query: 227 IDENEKSMLEAIRNI 241 I +++ + + Sbjct: 235 ITSVDEN-EQRANQL 248 >gi|323341378|ref|ZP_08081622.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] gi|323091255|gb|EFZ33883.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] Length = 301 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 108/298 (36%), Gaps = 59/298 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + ++ +A+N+SN +T GF+ +V F ++V + Sbjct: 1 MLRSLYSGVSGMKGFQTQMDVIANNVSNVNTHGFKAGRVLFQDMVSQNTTSASAPGLGLG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFAL------ESPRGIILTR 102 +G G+ STG ++D ++G+ +F + +S TR Sbjct: 61 GVNGKQVGLGMQTGAVDTMTGRGNMESTGQDMDLYIQGEGYFVVRKEATADSDAVTYYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYP---------------------------VLDMASVPIQIPQ 135 DG FK G LV+++G + I IP+ Sbjct: 121 DGAFKRDSQGLLVNSNGYHVKGQPTKGNIPAAWDNNFKSENYFGNPNATGSNLADINIPE 180 Query: 136 KD-----EIFNVGEKGEISQKGK----VIATMGLYSVDMSQGFVRRENSGIS-PNIPPTP 185 E + G + K + + L + G + ++ S N P Sbjct: 181 TVNGQRFESVTIDNSGLVVAKYGDTRYAMGKIELAKFNNPSGLKKSGSNNFSVTNNSGDP 240 Query: 186 LEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+ T++ GFLE SN + + QMI ++ + + + I +++ + E + Sbjct: 241 NFATPGLGGTGTLESGFLEMSNVDLADQFSQMIIASRAYQANSRSITTSDEMLQELLN 298 >gi|197285509|ref|YP_002151381.1| flagellar basal-body rod protein [Proteus mirabilis HI4320] gi|194682996|emb|CAR43444.1| flagellar basal-body rod protein [Proteus mirabilis HI4320] Length = 251 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 94/250 (37%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + VA+N++N T GF+ V I + + Sbjct: 1 MDHVIYTAMGGARHSMENQAVVANNLANASTPGFKAQLSAMRAV--PINGETLPTRTLTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ TG +D AL + + A++ G TR+G + DG L+ G Sbjct: 59 ASTPGSDQRQGTMNYTGRPMDVALSDNGYLAVQLEDGTQAYTRNGNIERNADGMLM-VQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 + + D + I++P + E ++ G ++ K++ +G L V Q + R Sbjct: 118 RLLMGDNGA--IEVPPQAE-ISIANNGIVTAHVPTDPPKMLGQIGRLKMVKPEQNDLVRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L V V G LE SN N M MI ++F +I Sbjct: 175 DDGLFHLSPQGTARVGETLPADDNVKVLAGVLEGSNVNPAEAMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 + + A Sbjct: 235 HSADDNAQRA 244 >gi|330809229|ref|YP_004353691.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377337|gb|AEA68687.1| Flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 236 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 8/225 (3%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 L V+ N++N +TVG++ + F+ + + + ++S + G+ TG Sbjct: 18 NLKAVSQNVANANTVGYKAERT-FNVMASNVAGPGVAGGLDDIQAQTWISTDGGALQHTG 76 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 D AL GDAWFA+++P G++L+RDGRF+V G LVS +G YPVL P+Q+ D Sbjct: 77 RATDLALSGDAWFAIKTPGGVLLSRDGRFQVDKSGYLVSRAG-YPVLADDG-PLQV--AD 132 Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 + + GE+S + + + + VD Q + + + + TP + V +G Sbjct: 133 GVLKIDASGEVSVDDRPVGRLSIVRVDNPQQLLAVGDGLYAASTGITPAKSF---VVHQG 189 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 LE SNA +M +M+ +++ ++ + + + I I Sbjct: 190 LLERSNAAMGTDMVKMMEVSRHVETMQRALSAYDGMLNSGINQIG 234 >gi|238788316|ref|ZP_04632110.1| Flagellar basal-body rod protein flgF [Yersinia frederiksenii ATCC 33641] gi|238723562|gb|EEQ15208.1| Flagellar basal-body rod protein flgF [Yersinia frederiksenii ATCC 33641] Length = 251 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAV--PIDGPSMATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +V +G + + G Sbjct: 59 ASTPGVDISQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVGANGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI++P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIEVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVRATAGEVMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + + + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPAAQQTRGAQLANDPLIKIMPGVLEGSNVKAVEAMTDMIANARSFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|322435953|ref|YP_004218165.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] gi|321163680|gb|ADW69385.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] Length = 251 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 16/239 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + LA Q L T A+N++N T GFR + FS V+ + Q Sbjct: 1 MDSGLYAAYTGLLARTQALDTAANNLANASTNGFRAQRDSFSGVLASGLAAGQQGSQVGV 60 Query: 57 ---SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 S+ G + G ++T LD A+ G +FA+ + G+ TRDG F ++ G Sbjct: 61 GINSYGVLGGSSADQSQGPMVTTSNPLDVAINGTGFFAIRTAHGVRYTRDGAFTLSAQGQ 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK----VIATMGLYSVDMSQGF 169 L + +G+ PVL+ A PI +P + + G ++ + V+ +G++ + G Sbjct: 121 LQTGAGE-PVLNTAMAPITLPSGE--VQISGDGTVAVQTAAGSGVVGQLGIFDFASTAGL 177 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + + P S VK+G +E +N +S++ Q++ + ++ + + Sbjct: 178 TQEGANRFKAPDDAVPTA--STAMVKQGAVEGANQDSVHGTMQLVLIQRQAEMMQKALS 234 >gi|284041497|ref|YP_003391837.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945718|gb|ADB48462.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 232 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 95/249 (38%), Gaps = 31/249 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDIDQKIS 57 M+ I + +A + R +A++++N T G++ + F +++ + N Q I Sbjct: 1 MERGLYIAASGMIAEQMRQDAIANDLANASTPGYKADRITQASFGDLLLSNSN-TGQVIG 59 Query: 58 FVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + +G + + T LD A+ G+ WF +++P G+ TR+G+F + G Sbjct: 60 PLGTGAYADSKVTDLRPQATRVTEEPLDLAIVGEGWFGVQTPEGVRYTRNGQFSASPQGQ 119 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 L+ G+ PVL P+Q+ + + + + L + R+E Sbjct: 120 LIDQLGR-PVLGPGGQPVQLDARGHV-----------RPGSVGVFALANA-------RKE 160 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 V+ G LE S + M MI + + + +I + + Sbjct: 161 GDNYFTGAAGGQATG----QVEIGALEGSGIDPTRTMVDMIASFRAYEAGQKVITTIDDT 216 Query: 234 MLEAIRNIA 242 + + Sbjct: 217 LRRTSTQVG 225 >gi|227356000|ref|ZP_03840392.1| flagellar basal-body rod protein [Proteus mirabilis ATCC 29906] gi|227163988|gb|EEI48890.1| flagellar basal-body rod protein [Proteus mirabilis ATCC 29906] Length = 251 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 93/250 (37%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + VA+N++N T GF+ V I + + Sbjct: 1 MDHVIYTAMGGARHSMENQAVVANNLANASTPGFKAQLSAMRAV--PINGETLPTRTLTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G+ TG +D AL + + A++ G TR+G + DG L+ G Sbjct: 59 ESTPGSDQRQGTMNYTGRPMDVALSDNGYLAVQLEDGTQAYTRNGNIERNADGMLM-VQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 + + D + I++P + E ++ G ++ K++ +G L V Q + R Sbjct: 118 RLLMGDNGA--IEVPPQAE-ISIANNGIVTAHVPTDPPKMLGQIGRLKMVKPEQNDLVRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L V V G LE SN N M MI ++F +I Sbjct: 175 DDGLFHLSPQGTARVGETLPADDNVKVLAGVLEGSNVNPAEAMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 + + A Sbjct: 235 HSADDNAQRA 244 >gi|327441421|dbj|BAK17786.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 280 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 114/280 (40%), Gaps = 41/280 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDID---- 53 M F +A +++ + +NM+N +T GF++ + F +++ + N + Sbjct: 1 MFKGFYTVATGMVAQQRKTEILTNNMANANTPGFKSDQTTIRSFPDMLMSAVNSTNIPTE 60 Query: 54 --------QKISFVASGK----EYLSKEVGSFISTGTELDFAL-------------EGDA 88 + V +G ++ G STG D AL G Sbjct: 61 NGFAIKNLNPVGAVNAGVYLQETMPNQVQGQIYSTGLNTDIALINSSMPTDEASGNSGQI 120 Query: 89 WFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +F LE+ G TR+G F + G+LV+ G + VLD +Q + + G Sbjct: 121 FFRLENESGTESYTRNGNFTLDGQGNLVNPQGLF-VLDANGERMQFDNDN--IRISSDGA 177 Query: 148 ISQKGKV-IATMGLYSVDMSQGFVRRENSGISP----NIPPTPLEDLSGVTVKRGFLEDS 202 I + V + T+G+ + V+R+N + ++P + ++++ +LE S Sbjct: 178 IFDENDVQVGTLGVAFSENPDVLVKRDNGLFNTLDGVDLPSAYGQANVQFSMQQQYLEGS 237 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N ++ M ++ + F + ++ +KSM +A+ I Sbjct: 238 NVDASKAMTDLLTAYRAFEANQKVLQAYDKSMEKAVNEIG 277 >gi|229591870|ref|YP_002873989.1| flagellar basal body rod protein FlgF [Pseudomonas fluorescens SBW25] gi|229363736|emb|CAY51141.1| flagellar basal-body rod protein [Pseudomonas fluorescens SBW25] Length = 246 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSM--PVFGDSFPARAFAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ I TG +LD A+ G+ W A+++P G R V G L + +G Sbjct: 59 TERPGTDFSPGAMIETGRDLDVAVSGNGWMAVQTPDGSEAYVRSASMNVDALGVLRAGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 P++ PI +P + + VG G IS + + + L D+ + Sbjct: 119 -MPIMGNGG-PIAVPPQ-QKIEVGADGTISIRAMGEGPRVMAEVDRIKLVQPDLKN--MN 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G P + + VT+ GFL+ SN N++ EM ++ L+++F +++ Sbjct: 174 KGLDGTIHTKDGQPAQADATVTLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAK 233 Query: 231 --EKSMLEAIR 239 +++M ++ Sbjct: 234 EDDQAMTRVMQ 244 >gi|157373206|ref|YP_001471806.1| flagellar basal-body rod protein FlgF [Shewanella sediminis HAW-EB3] gi|157315580|gb|ABV34678.1| flagellar basal-body rod protein FlgF [Shewanella sediminis HAW-EB3] Length = 244 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 13/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M A + + + A+N++N +T GF+ + + V + Q Sbjct: 1 MDKMLYTAAAGAARVMEAQAIRANNLANAETTGFKADLERVNATVIPAMGNTLQTRVMAQ 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S + G+ TG LD A+ F++ + +G TR G +G L + G+ Sbjct: 61 TQSSGFSHQSGALNPTGRTLDLAIREQGLFSVMTEQGEAYTRSGTLVPDTNGQL-TIDGR 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PV + PI +P+ E+F VG+ G IS + + + L + ++ + + Sbjct: 120 -PVAGIDG-PIVLPEYRELF-VGDDGRISVLAAEGGITEEVGQLKLVNPELDT--MEKGL 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + PL+ V V GFLE SN ++ E+ + L+++F L+ EK + Sbjct: 175 DGLFYSRDGQPLQANEQVKVDSGFLESSNVKAVSELIASMDLSRQFEVQVKLMKSAEK-L 233 Query: 235 LEAIRNI 241 EA + Sbjct: 234 AEAGNRL 240 >gi|169831903|ref|YP_001717885.1| hypothetical protein Daud_1757 [Candidatus Desulforudis audaxviator MP104C] gi|169638747|gb|ACA60253.1| protein of unknown function DUF1078 domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 310 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 106/307 (34%), Gaps = 68/307 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV- 59 M S G++ + R+ +A+N++N +T F+ +V F E++ V Sbjct: 1 MIRSLTSGVSGLRNHQVRMDVIANNIANVNTTAFKAGRVNFQEILSQNIRGTSASTIGVD 60 Query: 60 -------ASGKEYLS----KEVGSFISTGTELDFALEGDAWFALE--SPRGI---ILTRD 103 G S G+ +T LD A++G+ +F L S GI TRD Sbjct: 61 SINPAQIGLGMSVQSIDILFGQGALTTTYRVLDMAIDGNGFFRLGKYSDEGIIEYYYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVL--------------------------DMASVPIQIPQKD 137 G F V +DG LVS+ G + + + I++ Sbjct: 121 GAFYVDNDGYLVSSGGLHVLGVGQNGASWLTEDAIKTVVNRTYSVEAGFSGERIRLFDPS 180 Query: 138 EI----------FNVGEKGEISQKGKV--IATMGLYSVDMSQGFVRRENSGI-----SPN 180 + + G I G+ A + + + + R + N Sbjct: 181 GVDPGLENNLTTLRIDPNGLIFVNGRTDRAALILIDNYGNPENLTRLGGNLYEVPLRGQN 240 Query: 181 IPPTPLEDLSGV--------TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 PTP + GV + G LE SN + E MI + F + +I +++ Sbjct: 241 AEPTPYNEGWGVPDSGGGQGRLVSGALEMSNVDLSAEFANMITTQRGFQANARVITVSDE 300 Query: 233 SMLEAIR 239 + E I Sbjct: 301 MLQELIN 307 >gi|16080693|ref|NP_391521.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. 168] gi|221311597|ref|ZP_03593444.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. 168] gi|221315924|ref|ZP_03597729.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320837|ref|ZP_03602131.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221325122|ref|ZP_03606416.1| flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. SMY] gi|6648066|sp|P39752|FLHO_BACSU RecName: Full=Flagellar hook-basal body complex protein flhO gi|1763700|emb|CAB05950.1| flhO [Bacillus subtilis subsp. subtilis str. 168] gi|2636165|emb|CAB15657.1| putative flagellar basal-body rod protein [Bacillus subtilis subsp. subtilis str. 168] Length = 270 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 34/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV----------GA 47 M +A +A ++R +++N++N +T G++ + F E++ G Sbjct: 1 MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYKADQGSMRAFPEMLLSRIESKSPAGT 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-------------WFALES 94 + +I + V + GS ST D AL + ++ +++ Sbjct: 61 SRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDIALIENQVPMSAETNEKAALFYPVQT 120 Query: 95 PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 GI ++ F + ++ L + +G+ P+L PI + +E F V E G ++ G+ Sbjct: 121 ADGIRYSKSSTFSLNENNQL-TINGR-PILSTDRQPITV--DNENFTVSENGTVTTNGRT 176 Query: 155 IATMGLYSVDMSQGFVRRENSGISP----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + + + R N S ++P + ++K+G E SN + Sbjct: 177 AGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSAAGNNQVAYSLKQGVSELSNVDVTSAY 236 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +M + F + +I +KSM +A I Sbjct: 237 TEMTEAYRSFEANQKVIQAYDKSMDKAANEIG 268 >gi|238799108|ref|ZP_04642564.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC 43969] gi|238717055|gb|EEQ08915.1| Flagellar basal-body rod protein flgF [Yersinia mollaretii ATCC 43969] Length = 251 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLDQQAVTANNLANASTPGFRAQLSAMRAV--PIDGPSMATRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +V +G + + G Sbjct: 59 ASTPGVDISQGTINFSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI++P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIEVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVRATAGEVMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + + + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPAAQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMTDMIANARSFEMQMKII 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|300854230|ref|YP_003779214.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] gi|300434345|gb|ADK14112.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] Length = 255 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 99/257 (38%), Gaps = 23/257 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M SF ++ + E + + +N++N +TVGF+ + F++++ + + S Sbjct: 1 MIRSFYSAVSGMITQEAKQDVITNNLANANTVGFKQDDLRVKSFNDMLLQNYDKTEGNRS 60 Query: 58 ----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 GS STG DFA++G +F + G TRDG F Sbjct: 61 VRNIIGSISLGSGIDSVKTGFTQGSIDSTGVSTDFAIDGRGFFTVRGQDGKEYYTRDGHF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQ---KDEIFNVGEKGEISQKGKVIATMGLYSV 163 V +G LV+ +G VL + + + + + G I+ G + Sbjct: 121 HVNTNGVLVNDAGD-SVLARNTRTGALGEMNVGNGNMTSDDHGNINIDGTPSYKLYTVDF 179 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + ++ + + V V++ LE SN N + M Q++ + F + Sbjct: 180 NDYNTLTKVGDNLYTGTNAAE-----TNVVVRQKSLEKSNVNIVNTMSQLMTTMRSFETD 234 Query: 224 TTLIDENEKSMLEAIRN 240 + ++++ + I Sbjct: 235 QKAVQSIDETLEKLINE 251 >gi|300722681|ref|YP_003711971.1| flagellar basal-body rod cell-proximal protein [Xenorhabdus nematophila ATCC 19061] gi|297629188|emb|CBJ89784.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Xenorhabdus nematophila ATCC 19061] Length = 251 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A + + A+N++N T GF+ V I+ + + Sbjct: 1 MDHVIYTAMGAARQTLEHQAVTANNLANASTSGFKAQLAALRAV--PIEGETLPTRTLTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G T LD A+ + A++ G TR+G +++ +G L+ G Sbjct: 59 ASTPGMDSRQGPMNYTSRPLDVAVGQGGFLAVQLEDGTEAYTRNGSIQISPEGQLM-VQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 + +L + PI +P + E + G IS ++ +G L V V R Sbjct: 118 R--MLMGENGPIDVPPQAE-LTMAADGAISALIASDPPTLLGQIGKLKIVKPEASQVVRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + V + G LE SN N + M MI ++F +I Sbjct: 175 DDGLFHLTPQAQEQVGNELAASTEVKIMPGVLEGSNVNPVESMVNMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 ++++ A + +A Sbjct: 235 HSSDENAQRANQILA 249 >gi|238785496|ref|ZP_04629479.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC 43970] gi|238713598|gb|EEQ05627.1| Flagellar basal-body rod protein flgF [Yersinia bercovieri ATCC 43970] Length = 251 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLDQQAVTANNLANASTPGFRAQLSAMRAV--PIDGPSMATRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +V +G + + G Sbjct: 59 ASTPGVDISQGTINFSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI++P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIEVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVRATPGEVMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + + + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPATQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMTDMIANARSFEMQMKII 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|192360677|ref|YP_001982399.1| flagellar basal-body rod protein FlgF [Cellvibrio japonicus Ueda107] gi|190686842|gb|ACE84520.1| flagellar basal-body rod protein FlgF [Cellvibrio japonicus Ueda107] Length = 295 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 15/212 (7%) Query: 31 TVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 T GFR + S +G D ++ + G I+TG ELD A++G + Sbjct: 79 TTGFRAD-FEQSRSMGVYYGDGQPTRAYALTESPSSDFTAGPMITTGNELDVAIQGTGFI 137 Query: 91 ALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 A+++P G TR G + G L +A+G PV+ A PI IP+ E VG G IS Sbjct: 138 AIQAPDGTEAYTRAGNMTIDAAGMLRTANG-LPVMGAAG-PINIPEN-ERVAVGADGTIS 194 Query: 150 QKG--------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLED 201 G +A + L + D+ + + + G+ + VT++ G LE Sbjct: 195 MVGLGQGPEAMVEVARIKLVNPDVKN--LEKGDDGLFRQRDGLNAQPAVDVTLRAGMLEA 252 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 SN N++ E Q++ L +++ ++ E++ Sbjct: 253 SNVNAVTEFTQIMSLARQYEMQVKVMKAAEEN 284 >gi|312962296|ref|ZP_07776787.1| flagellar basal-body rod protein F [Pseudomonas fluorescens WH6] gi|311283223|gb|EFQ61813.1| flagellar basal-body rod protein F [Pseudomonas fluorescens WH6] Length = 246 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 18/249 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A+N++N T GF+ + + + D +F Sbjct: 1 MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSM--PVFGDSFPARAFAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ I TG +LD A+ GD W A+++P G R V G L + +G Sbjct: 59 TERPATDFSPGAMIETGRDLDVAVNGDGWMAVQTPDGGEAYVRSASMNVDALGVLRAGNG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 P++ PI +P + + VG G IS + + + L D+ + Sbjct: 119 -MPIMGNGG-PIAVPPQ-QKIEVGADGTISIRAMGEGPRVMAEVDRIKLVQPDLKN--MN 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G P + V + GFL+ SN N++ EM ++ L+++F +++ Sbjct: 174 KGLDGTIHTKDGKPAVADASVKLTSGFLQASNVNAVEEMTAVLALSKQFELHIKMMNSAK 233 Query: 231 -EKSMLEAI 238 + + + Sbjct: 234 EDDQAMTRV 242 >gi|332161323|ref|YP_004297900.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605243|emb|CBY26741.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. palearctica Y11] gi|325665553|gb|ADZ42197.1| flagellar basal body rod protein FlgF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860605|emb|CBX70902.1| flagellar basal-body rod protein flgF [Yersinia enterocolitica W22703] Length = 251 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR+ V I + V Sbjct: 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRSQLAAMRAV--PIDGPSMATRTMVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A+ P G TR+G +++ DG + + G Sbjct: 59 ASTPGVDISQGTMNYSGRPLDVALQQDGYLAVRLPDGTEAYTRNGNIQISADGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI++P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIEVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVRATAGEVMHG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L + + + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTPETQQARGAQLANDPLIKIMPGVLEGSNVKAVEAMADMIANARGFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|300928371|ref|ZP_07143905.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 187-1] gi|300463629|gb|EFK27122.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 187-1] Length = 251 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQILNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|154687759|ref|YP_001422920.1| FlhO [Bacillus amyloliquefaciens FZB42] gi|154353610|gb|ABS75689.1| FlhO [Bacillus amyloliquefaciens FZB42] Length = 265 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 103/267 (38%), Gaps = 29/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV-GAIKNDIDQKI 56 M +A + ++R +++N++N +T G++ + F E++ I+ D KI Sbjct: 1 MLKGLYTATSAMITQQRRTEMLSNNIANANTSGYKEDQGSIRAFPEMLLSRIEGDKKTKI 60 Query: 57 SFVASGKEYLS----KEVGSFISTGTELDFAL-------------EGDAWFALESPRGII 99 V +G GS +T D AL + ++ +++ G+ Sbjct: 61 GSVNTGVYMQELKPLFTQGSLKTTDQPTDIALMENQVPKNAETNENAELFYPVQTAGGVR 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 ++ F + ++ L + +G VL PI + +E F V E G ++ G+ + Sbjct: 121 YSKSSTFSLNENNQL-TINGNL-VLSTNGQPITV--DNEKFTVSENGTVTTNGRPAGQID 176 Query: 160 LYSVDMSQGFVRRENSGI----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + + + R N +P ++K+G E SN + +M Sbjct: 177 IRMEEDVRNLKRDGNDLYSTADGSELPSAAANPQVSYSLKQGVSELSNVDVTSTYTEMTE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + F + +I +KSM +A I Sbjct: 237 AYRSFEANQKVIQAYDKSMDKAANEIG 263 >gi|251789169|ref|YP_003003890.1| flagellar basal body rod protein [Dickeya zeae Ech1591] gi|247537790|gb|ACT06411.1| flagellar basal body rod protein [Dickeya zeae Ech1591] Length = 251 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + + NM+N T GFR V I+ ++ + V Sbjct: 1 MDHAIYTAMGAASQTLEQQAVTSHNMANASTPGFRAQLAAMRAV--PIQGVTNETRTLVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS TG +D AL D W A+ + G TR+G ++ +G L G Sbjct: 59 SSTPGVDTTPGSMDYTGRSMDVALSQDGWLAVRAADGSEAYTRNGNMEINSNGQLA-VQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMG-LYSVDMSQGFVRRE 173 + + D PI++P + + +G G I S + +G L V + V R Sbjct: 118 RLVMGD--GGPIEVPPQTQ-LTIGPDGTINALNPSDAANTVTQIGRLKLVKATANEVTRG 174 Query: 174 NSGISPNIPPTP------LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G P L++ + V V G LE SN N++ M +MI +++F +I Sbjct: 175 DDGFFRVSPAAQQQRGAVLQNDATVRVMPGVLEGSNVNTVESMVEMISNSRRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 + + A + +A Sbjct: 235 SNVDDNTQRANQILA 249 >gi|307721136|ref|YP_003892276.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] gi|306979229|gb|ADN09264.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] Length = 273 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 112/271 (41%), Gaps = 30/271 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQT + A + RL T+A+N++N +T GF+ ++ F + ++++ + Sbjct: 1 MQTGYYSSAAGMVTQFNRLDTIANNLANVNTNGFKEDQLIVGDFMRLYKEARDELSNANN 60 Query: 58 FVASGK--------------EYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTR 102 A Y + VG+ + LDFAL + +FA+++P G+ LTR Sbjct: 61 SKAGAAFLNRTMTRAPQIVDSYTNYSVGNMQKSSNSLDFALSQEGLFFAVKTPEGVRLTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMA----SVPIQIPQKDEIFNVGEKGEI------SQKG 152 DG F + D+G L++ G Y VL I D I V + G+I S Sbjct: 121 DGAFTLNDEGKLITKQG-YEVLPSDYQNSQEGISFATTDSIIEVDKNGQILTNVPNSASL 179 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + + + + V+ ++ + V++GF+E SN N++ M Q Sbjct: 180 VQNKKLFIAQPESLKDLVKEGDNLYKLADINSLKSIEQSGAVRQGFVEKSNVNAVKMMTQ 239 Query: 213 MIHLTQKFNSITTLIDENEKSMLE-AIRNIA 242 +I + +D M + AI IA Sbjct: 240 LIETNRLVGMYQKAMDTQMNDMNKDAIEKIA 270 >gi|89068730|ref|ZP_01156116.1| flagellar basal-body rod protein FlgF [Oceanicola granulosus HTCC2516] gi|89045693|gb|EAR51755.1| flagellar basal-body rod protein FlgF [Oceanicola granulosus HTCC2516] Length = 248 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 8/248 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S I L+ +++ + A+NM+N +T GF+ ++ F + + +FV Sbjct: 1 MENSNYIALSLATVMQRSIDVAANNMANANTAGFKGERILFDSYLSPGDAGEENGATFVL 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ G +TG LD AL+G WF+ ++ G RDGRF V G+LV+ +G Sbjct: 61 DRGSFMDDSQGPVRNTGNVLDVALQGPGWFSYQTQDGQQAFGRDGRFAVDAQGNLVTQAG 120 Query: 120 KYPVLDMASVPIQIPQKD-EIFNVGEKGEISQKGK-VIATMGLYSVDMSQGFVRRENSGI 177 VLD PI +P + + G +S + +G++ V + + R Sbjct: 121 A-RVLDAGGQPIALPPDAVAELVIADDGTLSSPATGALGRLGVFDVPDLKSYTRIGAGMF 179 Query: 178 SPNIP---PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 PL DL+ V +G LE SN + EM +M+ + + + T L+ ++ Sbjct: 180 VAPAEADVAAPLPDLA-TKVVQGALEGSNVQPIVEMTRMMAIQKSYEQATKLMGTGDELR 238 Query: 235 LEAIRNIA 242 +A+R + Sbjct: 239 KDALRRLG 246 >gi|255021355|ref|ZP_05293403.1| Flagellar basal-body rod protein flgF [Acidithiobacillus caldus ATCC 51756] gi|254969218|gb|EET26732.1| Flagellar basal-body rod protein flgF [Acidithiobacillus caldus ATCC 51756] Length = 246 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 16/218 (7%) Query: 33 GFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL 92 GFR +F + + + A+ E G + TG LD A+ G W A+ Sbjct: 32 GFRAEMAQFRAL--PVYGQGLPTRVYTATTGESWDFRSGPIVRTGRALDVAVNGPGWMAV 89 Query: 93 ESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 ++P G TRDG +V G LV+A+G +PVL + PI +P +G G IS Sbjct: 90 QAPDGKEAYTRDGNLQVNGQGLLVTATG-HPVLGVNGTPISLPP-MSHLTIGADGVISGI 147 Query: 152 GK--------VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSN 203 I + L + +Q +R+ + G+ N+ + V ++ G LE SN Sbjct: 148 PAGNLPDGLMAINQIKLVNPPANQ--LRQSSDGLFVNVDGKAAPEDGKVVLESGALEGSN 205 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 N ++ M QM+ +++F T L+ + +A I Sbjct: 206 VNPIHAMVQMLQDSRQFEMQTKLMQTISQD-RDAANQI 242 >gi|187926953|ref|YP_001893298.1| flagellar basal-body rod protein FlgF [Ralstonia pickettii 12J] gi|241665282|ref|YP_002983641.1| flagellar basal-body rod protein FlgF [Ralstonia pickettii 12D] gi|187728707|gb|ACD29871.1| flagellar basal-body rod protein FlgF [Ralstonia pickettii 12J] gi|240867309|gb|ACS64969.1| flagellar basal-body rod protein FlgF [Ralstonia pickettii 12D] Length = 245 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + + L + + A+N++N T GF+ F V ++ D SFV Sbjct: 1 MDRSIYVSMTGVKHLFDQQAASANNLANASTTGFKAQIDAFHTV--GVQGDGSPTRSFVM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G +TG LD A++G +FA+++P G TR G F++ DG++V+ SG Sbjct: 59 ASAIGTDVTPGPIETTGRALDVAIDGQGYFAVQAPDGTEAYTRAGTFQLNPDGTIVTLSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKGKV----IATMGLYSVDMSQGFVRR 172 + PV+ PI +P + G IS + + L S+D S + R Sbjct: 119 Q-PVMGDGG-PITLPPN-TTVQFAKDGTVNAISADNVTPPVSLGRLKLVSIDPSN--LDR 173 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ + V + G LE SN N + MI ++++ + ++ Sbjct: 174 GTDGLFRQRDGQDADVNENVRITPGALEGSNVNLTDSLVNMIEISRQLEMQMKSLQTSDT 233 Query: 233 SMLEA 237 + A Sbjct: 234 NAQSA 238 >gi|320664476|gb|EFX31627.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H7 str. LSU-61] Length = 251 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADITPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKARGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|193069514|ref|ZP_03050468.1| flagellar basal-body rod protein FlgF [Escherichia coli E110019] gi|192957262|gb|EDV87711.1| flagellar basal-body rod protein FlgF [Escherichia coli E110019] Length = 251 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPILQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|307131608|ref|YP_003883624.1| flagellar basal-body rod protein flgF [Dickeya dadantii 3937] gi|306529137|gb|ADM99067.1| Flagellar basal-body rod protein flgF [Dickeya dadantii 3937] Length = 251 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + + NM+N T GFR V I+ ++ + V Sbjct: 1 MDHAIYTAMGAASQTLEQQAVTSHNMANASTPGFRAQLSAMRAV--PIQGVTNETRTLVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + GS TG +D AL D W A+ S G TR+G ++ +G L + G Sbjct: 59 SSTPGVDTTPGSMDYTGRSMDVALSQDGWLAVRSADGSEAYTRNGNMEINANGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMG-LYSVDMSQGFVRRE 173 + D PI +P + + +G G I S + +G L V + V R Sbjct: 118 NLVMGD--GGPIDVPPQTQ-LTIGPDGTINALNPSDAANTVTQIGRLKLVKATGTEVTRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L++ + V V G LE SN N++ M +MI +++F +I Sbjct: 175 DDGLFRVSPAAQQQRGAALQNDATVRVMPGVLEGSNVNTVESMVEMISNSRRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 + + A + +A Sbjct: 235 SNVDDNTQRANQILA 249 >gi|16129040|ref|NP_415595.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|89107923|ref|AP_001703.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. W3110] gi|110805094|ref|YP_688614.1| flagellar basal body rod protein FlgF [Shigella flexneri 5 str. 8401] gi|170080728|ref|YP_001730048.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|188495735|ref|ZP_03003005.1| flagellar basal-body rod protein FlgF [Escherichia coli 53638] gi|194438118|ref|ZP_03070211.1| flagellar basal-body rod protein FlgF [Escherichia coli 101-1] gi|209918331|ref|YP_002292415.1| flagellar basal body rod protein FlgF [Escherichia coli SE11] gi|218694611|ref|YP_002402278.1| flagellar basal body rod protein FlgF [Escherichia coli 55989] gi|238900331|ref|YP_002926127.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli BW2952] gi|253773899|ref|YP_003036730.1| flagellar basal body rod protein FlgF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161183|ref|YP_003044291.1| flagellar basal body rod protein FlgF [Escherichia coli B str. REL606] gi|256023225|ref|ZP_05437090.1| flagellar basal body rod protein FlgF [Escherichia sp. 4_1_40B] gi|297517865|ref|ZP_06936251.1| flagellar basal body rod protein FlgF [Escherichia coli OP50] gi|300821142|ref|ZP_07101291.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 119-7] gi|300902468|ref|ZP_07120450.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 84-1] gi|300950172|ref|ZP_07164117.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 116-1] gi|301029708|ref|ZP_07192762.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 196-1] gi|301304984|ref|ZP_07211086.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 124-1] gi|301644989|ref|ZP_07244955.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 146-1] gi|307137712|ref|ZP_07497068.1| flagellar basal body rod protein FlgF [Escherichia coli H736] gi|331641621|ref|ZP_08342756.1| flagellar basal-body rod protein FlgF [Escherichia coli H736] gi|331667477|ref|ZP_08368341.1| flagellar basal-body rod protein FlgF [Escherichia coli TA271] gi|331676868|ref|ZP_08377564.1| flagellar basal-body rod protein FlgF [Escherichia coli H591] gi|2494531|sp|P75938|FLGF_ECOLI RecName: Full=Flagellar basal-body rod protein flgF; AltName: Full=Putative proximal rod protein gi|1787317|gb|AAC74161.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|4062655|dbj|BAA35886.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K12 substr. W3110] gi|110614642|gb|ABF03309.1| flagellar basal-body rod protein FlgF [Shigella flexneri 5 str. 8401] gi|169888563|gb|ACB02270.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|188490934|gb|EDU66037.1| flagellar basal-body rod protein FlgF [Escherichia coli 53638] gi|194423054|gb|EDX39048.1| flagellar basal-body rod protein FlgF [Escherichia coli 101-1] gi|209911590|dbj|BAG76664.1| flagellar basal-body rod protein FlgF [Escherichia coli SE11] gi|218351343|emb|CAU97049.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli 55989] gi|238861103|gb|ACR63101.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli BW2952] gi|242376881|emb|CAQ31598.1| flagellar basal-body rod protein FlgF, subunit of Flagellar Motor Complex and Flagellum [Escherichia coli BL21(DE3)] gi|253324943|gb|ACT29545.1| flagellar basal-body rod protein FlgF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973084|gb|ACT38755.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli B str. REL606] gi|253977298|gb|ACT42968.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli BL21(DE3)] gi|260449783|gb|ACX40205.1| flagellar basal-body rod protein FlgF [Escherichia coli DH1] gi|299877396|gb|EFI85607.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 196-1] gi|300405500|gb|EFJ89038.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 84-1] gi|300450519|gb|EFK14139.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 116-1] gi|300526441|gb|EFK47510.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 119-7] gi|300839702|gb|EFK67462.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 124-1] gi|301076718|gb|EFK91524.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 146-1] gi|309701349|emb|CBJ00650.1| flagellar basal-body rod protein FlgF [Escherichia coli ETEC H10407] gi|315135709|dbj|BAJ42868.1| flagellar basal body rod protein FlgF [Escherichia coli DH1] gi|315253878|gb|EFU33846.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 85-1] gi|323937817|gb|EGB34081.1| flagellar basal-body rod protein FlgF [Escherichia coli E1520] gi|323942546|gb|EGB38713.1| flagellar basal-body rod protein FlgF [Escherichia coli E482] gi|323962676|gb|EGB58254.1| flagellar basal-body rod protein FlgF [Escherichia coli H489] gi|323973334|gb|EGB68523.1| flagellar basal-body rod protein FlgF [Escherichia coli TA007] gi|324017419|gb|EGB86638.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 117-3] gi|331038419|gb|EGI10639.1| flagellar basal-body rod protein FlgF [Escherichia coli H736] gi|331065062|gb|EGI36957.1| flagellar basal-body rod protein FlgF [Escherichia coli TA271] gi|331075557|gb|EGI46855.1| flagellar basal-body rod protein FlgF [Escherichia coli H591] gi|332342623|gb|AEE55957.1| flagellar basal-body rod protein FlgF [Escherichia coli UMNK88] Length = 251 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|254255088|ref|ZP_04948405.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] gi|124899733|gb|EAY71576.1| Flagellar basal body rod protein [Burkholderia dolosa AUO158] Length = 241 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 14/241 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ + ++ L A+N++N T GFR V+ + + ++ + Sbjct: 1 MEAFIYTAMTGAAYAQRALGVRANNLANAQTAGFRADLVRAESLTPDGVGYDSRHLAHLV 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S + G TG LD A+ G + +E+ G TR G + DG+L + +G+ Sbjct: 61 S--TDVDVAPGPMSETGRSLDVAIAGAGYLTVETDDGPAYTRAGHLSIDGDGAL-TVNGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PVL PI +P +G G IS + +A + L + D + + + Sbjct: 118 -PVLGDGG-PIVLPAH-RSATIGGDGTISVVPSGESEVQTVARLLLVNPDPAD--LVKNP 172 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + + VTVK G LE SN +++ EM Q + LT+ F L ++ Sbjct: 173 EGLLVSRSGAEYDADETVTVKGGHLEGSNISAIEEMMQTLSLTRSFEMQMRLYRAADEMA 232 Query: 235 L 235 Sbjct: 233 D 233 >gi|15801194|ref|NP_287211.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H7 EDL933] gi|15830709|ref|NP_309482.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H7 str. Sakai] gi|168747147|ref|ZP_02772169.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4113] gi|168758630|ref|ZP_02783637.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4401] gi|168764489|ref|ZP_02789496.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4501] gi|168767736|ref|ZP_02792743.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4486] gi|168773922|ref|ZP_02798929.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4196] gi|168790012|ref|ZP_02815019.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC869] gi|168802022|ref|ZP_02827029.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC508] gi|195935467|ref|ZP_03080849.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H7 str. EC4024] gi|208805942|ref|ZP_03248279.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4206] gi|208815658|ref|ZP_03256837.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4045] gi|208822437|ref|ZP_03262756.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4042] gi|209397223|ref|YP_002269923.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4115] gi|217328081|ref|ZP_03444163.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. TW14588] gi|254792459|ref|YP_003077296.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H7 str. TW14359] gi|261227018|ref|ZP_05941299.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK2000] gi|261256252|ref|ZP_05948785.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK966] gi|291282097|ref|YP_003498915.1| Flagellar basal-body rod protein FlgF [Escherichia coli O55:H7 str. CB9615] gi|12514615|gb|AAG55823.1|AE005317_12 flagellar biosynthesis, cell-proximal portion of basal-body rod [Escherichia coli O157:H7 str. EDL933] gi|13360919|dbj|BAB34878.1| flagellar rod protein flgF [Escherichia coli O157:H7 str. Sakai] gi|187770508|gb|EDU34352.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4196] gi|188018201|gb|EDU56323.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4113] gi|189354581|gb|EDU73000.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4401] gi|189363129|gb|EDU81548.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4486] gi|189365533|gb|EDU83949.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4501] gi|189370455|gb|EDU88871.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC869] gi|189375940|gb|EDU94356.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC508] gi|208725743|gb|EDZ75344.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4206] gi|208732306|gb|EDZ80994.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4045] gi|208737922|gb|EDZ85605.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4042] gi|209158623|gb|ACI36056.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4115] gi|209773368|gb|ACI84996.1| flagellar rod protein flgF [Escherichia coli] gi|209773370|gb|ACI84997.1| flagellar rod protein flgF [Escherichia coli] gi|209773372|gb|ACI84998.1| flagellar rod protein flgF [Escherichia coli] gi|209773374|gb|ACI84999.1| flagellar rod protein flgF [Escherichia coli] gi|209773376|gb|ACI85000.1| flagellar rod protein flgF [Escherichia coli] gi|217318508|gb|EEC26934.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. TW14588] gi|254591859|gb|ACT71220.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O157:H7 str. TW14359] gi|290761970|gb|ADD55931.1| Flagellar basal-body rod protein FlgF [Escherichia coli O55:H7 str. CB9615] gi|320189760|gb|EFW64416.1| Flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC1212] gi|320637528|gb|EFX07328.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H7 str. G5101] gi|320643089|gb|EFX12290.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H- str. 493-89] gi|320648547|gb|EFX17202.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H- str. H 2687] gi|320653861|gb|EFX21935.1| flagellar basal body rod protein FlgF [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659341|gb|EFX26910.1| flagellar basal body rod protein FlgF [Escherichia coli O55:H7 str. USDA 5905] gi|326339299|gb|EGD63113.1| Flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. 1125] gi|326344740|gb|EGD68488.1| Flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. 1044] Length = 251 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADITPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|153953797|ref|YP_001394562.1| flagellar basal body rod protein FlgG [Clostridium kluyveri DSM 555] gi|219854413|ref|YP_002471535.1| hypothetical protein CKR_1070 [Clostridium kluyveri NBRC 12016] gi|146346678|gb|EDK33214.1| FlgG1 [Clostridium kluyveri DSM 555] gi|219568137|dbj|BAH06121.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 255 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 21/258 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGA---------- 47 M SF ++ + E + + +N++N +TVGF+ +K F+EV+ Sbjct: 1 MIRSFYTAVSGMIVQEAKQDVITNNLANVNTVGFKQDDLKSTPFNEVLIQNYDKVVNGKN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 ++N I G+ ST DFA++G +F + G TRDG F Sbjct: 61 VRNVIGSMTLGSKIDSVDTGFTQGTIESTDISTDFAIDGRGFFTVRREDGNEFYTRDGHF 120 Query: 107 KVTDDGSLVSASGKYPVLDMA--SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V G LV SG + I + G IS G + + Sbjct: 121 HVNTQGILVDDSGNTVIGRDNQTGALGAINVGNGDITSDAYGNISIDGNERYKIYTVDFN 180 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ + V++ LE SN N + M +I + F + Sbjct: 181 DYNDLTKVGDNLYTGENAAE-----INTVVRQKSLEKSNINLVNTMSDLITTMRTFETDQ 235 Query: 225 TLIDENEKSMLEAIRNIA 242 ++ + ++ + I Sbjct: 236 KVVQSIDGTLDKLINEAG 253 >gi|34498339|ref|NP_902554.1| flagellar basal-body rod protein flgF [Chromobacterium violaceum ATCC 12472] gi|34104193|gb|AAQ60552.1| flagellar basal-body rod protein flgF [Chromobacterium violaceum ATCC 12472] Length = 246 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 95/248 (38%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + +T A+N++N +T F+ + + + D ++V Sbjct: 1 MDRVLFLAMTGAKHEAWQQATTANNLANVNTNAFKADLAAYRAL--PVVGDGAPTRTYVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 GS TG DFAL +FA++ G TRDG + + G + + SG Sbjct: 59 DNTIGFDASQGSLQHTGNPSDFALGTPGFFAVQGADGQEAYTRDGGYVLDATGLMRTHSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + D PI +P + +G G + + ++ + + + V Sbjct: 119 LLIMGD--GGPITVPAGSQ-VQLGSDGSVMAVPQSGANRAPQLVGQIKMVNPGPKD--VY 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + + L + V + LE SN NS+ + QMI +++ ++ ++ Sbjct: 174 KGEDKLFHVNGGGTLPASADVKLVPETLESSNVNSVEALVQMISHGRQYELNIKMMQTSQ 233 Query: 232 KSMLEAIR 239 ++ +A + Sbjct: 234 QNDQQAAQ 241 >gi|331652130|ref|ZP_08353149.1| flagellar basal-body rod protein FlgF [Escherichia coli M718] gi|331050408|gb|EGI22466.1| flagellar basal-body rod protein FlgF [Escherichia coli M718] Length = 251 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAERQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|260597446|ref|YP_003210017.1| flagellar basal body rod protein FlgF [Cronobacter turicensis z3032] gi|260216623|emb|CBA29919.1| Flagellar basal-body rod protein flgF [Cronobacter turicensis z3032] Length = 252 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 99/255 (38%), Gaps = 21/255 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + S A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQSVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 + ++ GS T LD A++G D W A+++P G TR+G + T G L + Sbjct: 59 ASTPGVNMSQGSLDYTSRPLDVAIQGSDGWLAVQAPDGTEAYTRNGNIQRTATGQL-TIQ 117 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRR 172 G PV+ P+ +P+ E + G IS IA +G L V S V R Sbjct: 118 GN-PVMGEGG-PVVVPEGAE-VTIAADGTISVLNPGDAPNTIAPVGRLKMVKASAQEVVR 174 Query: 173 ENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + G+ L+ +++ G LE SN + M MI ++F + Sbjct: 175 GDDGLFRLNQQAQTARGATLQADPTISLMSGVLEGSNVKPVEAMTDMIANARRFEMQMKI 234 Query: 227 IDENEKSMLEAIRNI 241 I +++ + + Sbjct: 235 ISSVDEN-EQRANQL 248 >gi|300918679|ref|ZP_07135260.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 115-1] gi|300414173|gb|EFJ97483.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 115-1] Length = 251 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A++S G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQSADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|324113872|gb|EGC07846.1| flagellar basal-body rod protein FlgF [Escherichia fergusonii B253] gi|325497615|gb|EGC95474.1| flagellar basal body rod protein FlgF [Escherichia fergusonii ECD227] Length = 251 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPGGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 +PV+ A PI +P+ E + G IS +A +G L V S V+R Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGKLKLVKASDNEVQRG 174 Query: 174 NSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + GI L+ + V G LE SN N++ M MI ++F +I Sbjct: 175 DDGIFRLSAESQATRGPVLQADPSLRVMSGVLEGSNVNAVSAMSDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 + + A Sbjct: 235 SSVDDNEGRA 244 >gi|331682579|ref|ZP_08383198.1| flagellar basal-body rod protein FlgF [Escherichia coli H299] gi|331080210|gb|EGI51389.1| flagellar basal-body rod protein FlgF [Escherichia coli H299] Length = 251 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTP------LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQTTRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|146281772|ref|YP_001171925.1| flagellar basal-body rod protein FlgF [Pseudomonas stutzeri A1501] gi|145569977|gb|ABP79083.1| flagellar basal-body rod protein FlgF [Pseudomonas stutzeri A1501] Length = 203 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 14/204 (6%) Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGR 105 + D + S + G+ TG +LD A+EG+ W A+++P G R G Sbjct: 2 QVFGDSYPARVYAMSERPGTDFTAGALQETGRDLDVAIEGEGWVAVQAPDGNEAYVRTGS 61 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIAT 157 + G L +A G PVL PI IP + E ++G G IS + + Sbjct: 62 LNIDALGMLRTADG-MPVLGNGG-PIAIPPE-EKLDIGHDGTISIRALGEDPNVVVTVDR 118 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + L + D Q + + G+ PLE + V V GFLE SN N++ EM M+ L+ Sbjct: 119 LKLVNPDPQQ--LEKGTDGLIRMKDGQPLEADANVRVTSGFLEASNVNAVAEMTSMLALS 176 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 ++F ++ E R + Sbjct: 177 RQFELHVKMMRTAEDDAAAMARVL 200 >gi|308175374|ref|YP_003922079.1| flagellar basal-body rod protein [Bacillus amyloliquefaciens DSM 7] gi|307608238|emb|CBI44609.1| putative flagellar basal-body rod protein [Bacillus amyloliquefaciens DSM 7] gi|328555348|gb|AEB25840.1| flagellar basal-body rod protein [Bacillus amyloliquefaciens TA208] gi|328913716|gb|AEB65312.1| putative flagellar basal-body rod protein [Bacillus amyloliquefaciens LL3] Length = 265 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 102/267 (38%), Gaps = 29/267 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV-GAIKNDIDQKI 56 M +A + ++R +++N++N +T G++ + F E++ I+ D KI Sbjct: 1 MLKGLYTATSAMITQQRRTEMLSNNIANANTSGYKEDQGSIRAFPEMLLSRIEGDKKTKI 60 Query: 57 SFVASGKEYLS----KEVGSFISTGTELDFAL-------------EGDAWFALESPRGII 99 V +G GS +T D AL + ++ +++ G+ Sbjct: 61 GSVNTGVYMQELKPLFTQGSLKTTDQPTDIALMENQVPKNAETNENAELFYPVQTAGGVR 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 ++ F + + L + +G VL PI + +E F V E G ++ G+ + Sbjct: 121 YSKSSTFSLNQNNQL-TINGNL-VLSTNGQPITV--DNEKFTVSENGTVTSNGRQAGRID 176 Query: 160 LYSVDMSQGFVRRENSGI----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + + + R N +P ++K+G E SN + +M Sbjct: 177 IRMEEDVRNLKRDGNDLYSTADGSELPSAAANPQVSYSLKQGVSELSNVDVTSTYTEMTE 236 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + F + +I +KSM +A I Sbjct: 237 AYRSFEANQKVIQAYDKSMDKAANEIG 263 >gi|170680164|ref|YP_001744103.1| flagellar basal body rod protein FlgF [Escherichia coli SMS-3-5] gi|218704485|ref|YP_002412004.1| flagellar basal body rod protein FlgF [Escherichia coli UMN026] gi|293404361|ref|ZP_06648355.1| flgF [Escherichia coli FVEC1412] gi|298380141|ref|ZP_06989746.1| flagellar basal-body rod protein flgF [Escherichia coli FVEC1302] gi|300899596|ref|ZP_07117835.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 198-1] gi|307310145|ref|ZP_07589795.1| flagellar basal-body rod protein FlgF [Escherichia coli W] gi|331662483|ref|ZP_08363406.1| flagellar basal-body rod protein FlgF [Escherichia coli TA143] gi|170517882|gb|ACB16060.1| flagellar basal-body rod protein FlgF [Escherichia coli SMS-3-5] gi|218431582|emb|CAR12461.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli UMN026] gi|291428947|gb|EFF01972.1| flgF [Escherichia coli FVEC1412] gi|298279839|gb|EFI21347.1| flagellar basal-body rod protein flgF [Escherichia coli FVEC1302] gi|300356867|gb|EFJ72737.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 198-1] gi|306909863|gb|EFN40357.1| flagellar basal-body rod protein FlgF [Escherichia coli W] gi|315060355|gb|ADT74682.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli W] gi|320200973|gb|EFW75557.1| Flagellar basal-body rod protein FlgF [Escherichia coli EC4100B] gi|323379084|gb|ADX51352.1| flagellar basal-body rod protein FlgF [Escherichia coli KO11] gi|331060905|gb|EGI32869.1| flagellar basal-body rod protein FlgF [Escherichia coli TA143] Length = 251 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|322383079|ref|ZP_08056906.1| flagellar hook-basal body-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152741|gb|EFX45367.1| flagellar hook-basal body-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 271 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 110/266 (41%), Gaps = 38/266 (14%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ---KISFVASG----- 62 + L+Q+L +A+N++N +TVG++ F E++ ++KN ++ SG Sbjct: 7 SMNGLQQKLDILANNIANINTVGYKRKDASFQEILKSVKNQPEKFQLPGRMTPSGLQLGW 66 Query: 63 -----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT----DDGS 113 + G +T LD ++GD F + T+ G F+++ + G Sbjct: 67 GARLSQISSDFTQGPVENTQNSLDLMVQGDGMFEILVDGKPYWTKSGSFQLSVMPGNQGL 126 Query: 114 -LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGK---VIATMGLYSVDMS 166 L + G Y V + PI +P + + E+G + S+ G + + + ++ Sbjct: 127 ALTTKDGHY-VSGLNGEPIILPPNTQP-KIDEQGNVVAYSETGARPVQVGRIRVVQIERP 184 Query: 167 QGFVRRENSGIS-----------PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 Q + + + +++ + V +G+LE SN N EM ++I+ Sbjct: 185 QLLEAVGENLYTLKAGIEKGQALRDAAGLTVQEQGKLKVMQGYLEQSNVNLSDEMTELIN 244 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 + + F + + + SM+ N+ Sbjct: 245 VQRAFQLSSRAV-TSSDSMMGLANNL 269 >gi|284041521|ref|YP_003391861.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] gi|283945742|gb|ADB48486.1| fagellar hook-basal body protein [Conexibacter woesei DSM 14684] Length = 293 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 99/291 (34%), Gaps = 53/291 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + L A++++N +TV +++ + F + + ++ + Sbjct: 1 MMRGMFSAISGLKVNQTMLDVTANDLANVNTVAYKSSRTTFQDSLAQLQRGAAGPGNGTG 60 Query: 61 S------------GKEYLSKEVGSFISTGTELDFALEGDAWFALES------PRGIILTR 102 G G+ +TG+ LD +EG WF + + P TR Sbjct: 61 GSNALQIGLGVKLGSVDNIMTEGAPQTTGSPLDVYIEGSGWFRVANGTPPAVPTAFQWTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVP-----------------IQIPQKDEIFNVGEK 145 G F G L++++G+Y V A+ IQIP ++ Sbjct: 121 AGNFTTNSQGHLITSTGQYVVGRGATATPDGRGGFTYAPNATDSYIQIPPGSTDVSISPD 180 Query: 146 GEISQKGK-----------VIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 G +S + + L G R S TP Sbjct: 181 GGVSYVDRNRASPTFERRVTAGYIALGKFANEAGLQRNGGSTWSESAASGAATVDTPGVG 240 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T+ G LE SN + + MI + F + + +I +++ + + + Sbjct: 241 GNGRTLA-GMLEMSNVDLATQFTTMITAQRGFQANSRVISTSDEMLQDLVN 290 >gi|91794994|ref|YP_564645.1| flagellar basal-body rod FlgF [Shewanella denitrificans OS217] gi|91716996|gb|ABE56922.1| Flagellar basal-body rod FlgF [Shewanella denitrificans OS217] Length = 244 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 13/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + S A+N++N +T GF+ + + V Sbjct: 1 MDKMLYTAASGASRIMEAQSIRANNLANAETTGFKADLERVKSMALPGVEASLSTRVLVQ 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S++ G TG LD A+ F + G TR G +G L + +G+ Sbjct: 61 TQSNGFSQQSGEMNHTGRNLDMAIRDRGLFTVMVDGGEAYTRAGAMIADAEGQL-TVNGR 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PVL + P+ +P+ ++F VGE G IS + + + + + ++++ + + Sbjct: 120 -PVLGIDG-PMVLPEHKDLF-VGEDGTISVLPAEGGVIQEVGRLKMVNPELNE--LTKGA 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ I L GV V G+LE SN ++ E+ + L+++F L+ EK + Sbjct: 175 DGLLYPIAAGVLAADDGVQVDSGYLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEK-L 233 Query: 235 LEAIRNI 241 EA + Sbjct: 234 AEAGNRL 240 >gi|28211323|ref|NP_782267.1| flagellar hook protein flgE [Clostridium tetani E88] gi|28203763|gb|AAO36204.1| flagellar hook protein flgE [Clostridium tetani E88] Length = 365 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 66/340 (19%), Positives = 117/340 (34%), Gaps = 102/340 (30%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ A + +L + +N++N +T F+ +++F +V+ GA N Sbjct: 24 MLRSMFSGISGLKANQTKLDVIGNNIANVNTTAFKNQRIRFQDVLSQNLKFGTGASANVG 83 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFAL---------------- 92 S V G E G+ TG LDFA++GD +F + Sbjct: 84 GTNPSQVGLGVEVAGIDTVVSQGNMQPTGRNLDFAVDGDGYFVVARGKQEGKIEIEKDDE 143 Query: 93 ------ESPRG--IILTRDGRFKVTDDGSLVSASGKYPVLD------------------- 125 ++ G + TRDG F + D G L+++ G Y VL Sbjct: 144 AKKGEVKASDGLEVHYTRDGSFGLDDFGQLLTSDG-YRVLGYVPKGTTIKYADGKPVLEV 202 Query: 126 -------------MASVPIQIPQKD---------------EIFNVGEKGEISQ-----KG 152 P+ IP K + F+V + G I+ + Sbjct: 203 NPKEQEGGAKVEENDLKPLAIPDKVIYNGAGKDHGKAMTIKNFSVDKNGAINAVLANNEV 262 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP---------PTPLEDLSGVT----VKRGFL 199 I +G+ S G + + S P D S + +G L Sbjct: 263 VTIGQIGMADFKNSAGLYKEGKNLYSGTASSGDAIYRLGTDPTNDKSNEKGYGDIIQGRL 322 Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E SN + + +MI ++ F + +I ++ + + + Sbjct: 323 EMSNVDLAEQFTEMIVASRAFQANGKIITTGDEILQDLVN 362 >gi|157160604|ref|YP_001457922.1| flagellar basal body rod protein FlgF [Escherichia coli HS] gi|157066284|gb|ABV05539.1| flagellar basal-body rod protein FlgF [Escherichia coli HS] Length = 251 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPVNTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPILQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|302671950|ref|YP_003831910.1| flagellar basal-body rod protein FlgG2 [Butyrivibrio proteoclasticus B316] gi|302396423|gb|ADL35328.1| flagellar basal-body rod protein FlgG2 [Butyrivibrio proteoclasticus B316] Length = 277 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 37/277 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVG----------A 47 M + ++R+ + +N++N +T G++ + FS+ + Sbjct: 1 MVKGLYTAYTGMINEQRRMDVLTNNLANANTNGYKKEGLTARAFSDQLALKIKDYTDAPN 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR----------- 96 + V G+ Y+ G T DFA+ G +FA+E Sbjct: 61 TARGLGIINPGVKIGESYVDWSEGPMKETKNTFDFAIGGRGFFAVEYTNKAVNIERDTAG 120 Query: 97 --GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 ++ TRDG F + +G + + G Y VLD + IQ+ + G + Q G V Sbjct: 121 QMDVMYTRDGCFTMNVNGEITTQDGDY-VLDDSGSHIQLDPNL-PVEIDTLGNVIQDGAV 178 Query: 155 IATMGLYSVDMS---------QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 +A +G+Y + + + + P E + V GFLE SN + Sbjct: 179 VAKIGVYDFEATTYPDGRISYDNLLHYGENFFIPAGDDAGAEVVENARVYSGFLEQSNVS 238 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI + +++ +I + ++ A I Sbjct: 239 VVDEMVNMIATQRNYDTNQRMITTIDDTLQIAANQIG 275 >gi|321313188|ref|YP_004205475.1| flagellar basal-body rod protein [Bacillus subtilis BSn5] gi|320019462|gb|ADV94448.1| flagellar basal-body rod protein [Bacillus subtilis BSn5] Length = 270 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 34/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV----------GA 47 M +A +A ++R +++N++N +T G++ + F E++ G Sbjct: 1 MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYKADQGSMRAFPEMLLSRIESKSPAGT 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-------------WFALES 94 + +I + V + GS ST D AL + ++ +++ Sbjct: 61 SRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDIALIENQVPMNAETNEKAALFYPVQT 120 Query: 95 PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 GI ++ F + ++ L + +G+ P+L PI + +E F V E G ++ G+ Sbjct: 121 AGGIRYSKSSTFSLNENNQL-TINGR-PILSTDRQPITV--DNENFTVSENGTVTTNGRT 176 Query: 155 IATMGLYSVDMSQGFVRRENSGISP----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + + + R N S ++P + ++K+G E SN + Sbjct: 177 AGQIDIRMAEDVRNLKRDGNDLYSTADGNDLPSAAGNNQVSYSLKQGVSELSNVDVTSAY 236 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +M + F + +I +KSM +A I Sbjct: 237 TEMTEAYRSFEANQKVIQAYDKSMDKAANEIG 268 >gi|170020527|ref|YP_001725481.1| flagellar basal body rod protein FlgF [Escherichia coli ATCC 8739] gi|312971214|ref|ZP_07785392.1| flagellar basal-body rod protein FlgF [Escherichia coli 1827-70] gi|169755455|gb|ACA78154.1| flagellar basal-body rod protein FlgF [Escherichia coli ATCC 8739] gi|310336416|gb|EFQ01602.1| flagellar basal-body rod protein FlgF [Escherichia coli 1827-70] Length = 251 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPILQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|238751763|ref|ZP_04613251.1| Flagellar basal-body rod protein flgF [Yersinia rohdei ATCC 43380] gi|238710034|gb|EEQ02264.1| Flagellar basal-body rod protein flgF [Yersinia rohdei ATCC 43380] Length = 251 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAV--PIDGPSMPTRTMVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +V +G +++ G Sbjct: 59 ASTPGVDISQGTMNYSGRPLDVALQQDGYLAVQLPDGTEAYTRNGNIQVAANG-IMTVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI++P + + G IS IA +G + V + G V Sbjct: 118 -YPLMGDNG-PIEVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVKATAGEVMHG 174 Query: 174 NSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L + V + G LE SN ++ M MI + F +I Sbjct: 175 DDGLFHLTAATQQARGAQLANDPLVKIMPGVLEGSNVKAVEAMSDMIANARSFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 HSVDENEQRANQLLA 249 >gi|322832565|ref|YP_004212592.1| flagellar basal-body rod protein FlgF [Rahnella sp. Y9602] gi|321167766|gb|ADW73465.1| flagellar basal-body rod protein FlgF [Rahnella sp. Y9602] Length = 251 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 20/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A + S + N++N +T GFR+ + V + + Q + V Sbjct: 1 MDHAIYTAGGAASQTLVQQSVTSSNLANANTPGFRSQLLAMRAV--PVDGESLQTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG LD AL+ D + A++ P G TR+G +V+ L + G Sbjct: 59 ASTPGADMTQGKLNYTGRPLDVALQQDGFLAVQMPDGSEAYTRNGDMQVSPTNQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 +PV+ PI++P + V G I+ + +G L V + V R Sbjct: 118 -HPVMGDNG-PIEVPPNSQ-LTVSADGTIAVLEAGADPNTMGQLGKLKLVKAANNEVTRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ P L+ + V G LE SNA+ + M MI ++F +I Sbjct: 175 DDGMFRPTPATVQARGAALQPDPTIHVMPGTLEGSNADPVSTMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNI 241 +++ ++ N+ Sbjct: 235 HSVDEN-EQSANNL 247 >gi|315618247|gb|EFU98837.1| flagellar basal-body rod protein FlgF [Escherichia coli 3431] Length = 251 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDSTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|315296708|gb|EFU56003.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 16-3] Length = 251 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQARRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|157146225|ref|YP_001453544.1| flagellar basal body rod protein FlgF [Citrobacter koseri ATCC BAA-895] gi|157083430|gb|ABV13108.1| hypothetical protein CKO_01982 [Citrobacter koseri ATCC BAA-895] Length = 251 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + VA Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQMDYTSRPLDVALQQDGWLVVQTADGNEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGSE-ITIAADGTISALNPGDPANTVAPVGRLKLVKALGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGMFRLSAATQAARGPVLQADPSIRVMSGVLEGSNVNAVSAMSDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|291486215|dbj|BAI87290.1| flagellar basal-body rod protein [Bacillus subtilis subsp. natto BEST195] Length = 270 Score = 175 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 109/272 (40%), Gaps = 34/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV----------GA 47 M +A +A ++R +++N++N +T G++ + F E++ G Sbjct: 1 MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYKADQGSMRAFPEMLLSRIESKSPAGT 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-------------WFALES 94 + +I + V + GS ST +D AL + ++ +++ Sbjct: 61 SRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPIDIALIENQVPMNAETNENAALFYPVQT 120 Query: 95 PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 GI ++ F + ++ L + +G+ PVL PI + +E F V E G ++ G+ Sbjct: 121 ADGIRYSKSSTFSLNENNQL-TINGR-PVLSTDRQPITV--DNENFTVSENGTVTTNGRT 176 Query: 155 IATMGLYSVDMSQGFVRRENSGISP----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + + + R N S ++P + ++K+G E SN + Sbjct: 177 AGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSAAGNNQVSYSLKQGVSELSNVDVTSAY 236 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +M + F + +I +KSM +A I Sbjct: 237 TEMTEAYRSFEANQKVIQAYDKSMDKAANEIG 268 >gi|331672597|ref|ZP_08373386.1| flagellar basal-body rod protein FlgF [Escherichia coli TA280] gi|331070240|gb|EGI41606.1| flagellar basal-body rod protein FlgF [Escherichia coli TA280] Length = 251 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISVLNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|170737039|ref|YP_001778299.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia MC0-3] gi|169819227|gb|ACA93809.1| flagellar basal-body rod protein FlgF [Burkholderia cenocepacia MC0-3] Length = 241 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 15/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + L+ A+N+SN T GFR + A + Sbjct: 1 MDNFLYTAMTGAEHSLRALNVRANNLSNAQTSGFRADLASVTS--QAARGYGYDSRYHAT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 +++ E G TG LD A++G + A+E+ +G+ TR G + DG+L + +G Sbjct: 59 LTSTHVNPEPGKISETGRTLDVAIDGGGYLAVETAQGVAYTRAGALTLDGDGAL-TLNGN 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRREN 174 VL PI +P+ D +G G IS + + L + D + + + Sbjct: 118 -AVLGEGG-PIVLPEHDA-LTIGADGTISVVTAGEKDIQDAGRLLLVNPDPAD--LVKNA 172 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + T VTVK G LE SN +++ EM Q + LT+ F L ++ M Sbjct: 173 QGLIVSRTGTDYAADDSVTVKGGHLEASNVSAVEEMMQTMSLTRSFEMQMKLYKVADE-M 231 Query: 235 LEAIRNI 241 +A + Sbjct: 232 ADAGNRL 238 >gi|110641253|ref|YP_668983.1| flagellar basal body rod protein FlgF [Escherichia coli 536] gi|191172387|ref|ZP_03033928.1| flagellar basal-body rod protein FlgF [Escherichia coli F11] gi|300982620|ref|ZP_07176204.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 200-1] gi|110342845|gb|ABG69082.1| flagellar basal-body rod protein FlgF [Escherichia coli 536] gi|190907271|gb|EDV66869.1| flagellar basal-body rod protein FlgF [Escherichia coli F11] gi|300307085|gb|EFJ61605.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 200-1] gi|324013351|gb|EGB82570.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 60-1] Length = 251 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLVVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQARRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|326386931|ref|ZP_08208545.1| Flagellar basal-body rod FlgF [Novosphingobium nitrogenifigens DSM 19370] gi|326208611|gb|EGD59414.1| Flagellar basal-body rod FlgF [Novosphingobium nitrogenifigens DSM 19370] Length = 247 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 16/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A + +A+NM+N+ T GFR + + ++K + + Sbjct: 1 MDRLIYTAYSGMSASMVQQRVIANNMANSQTTGFRAEML--AATPVSLKGSGLEARAMTD 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + S + G TG LD A GD A+++ G TR G +G LV+ Sbjct: 59 AEVRGASMKQGEMTQTGNPLDVAFNGDTMMAVQARDGTEAYTRRGDLTADANGMLVNGD- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATMGLYSVDMSQGFVR 171 PVL + PI +P + + G + Q + + L S SQ + Sbjct: 118 NAPVLGESG-PITVPLGSK-LTISPDGTVLANDPANPDQPPNAVGRIKLASYTGSQ--IE 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ + L + G LE SN + + +M+ + F+ T ++ Sbjct: 174 KGLDGLFRVVGGGALPADENAKLVSGALEKSNVDPTSVLVEMVEAQRLFDMRTKVVSTAR 233 Query: 232 KSMLE 236 ++ + Sbjct: 234 ENDEK 238 >gi|253574272|ref|ZP_04851614.1| flagellar hook-basal body protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846749|gb|EES74755.1| flagellar hook-basal body protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 273 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 110/274 (40%), Gaps = 36/274 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + + ++QRL +ADN++N++TVG++ + F + + ++N Sbjct: 1 MNNTVISAMVSMSGIQQRLDLLADNIANSNTVGYKRKEANFEDTLTRVQNQTSDLNLPGR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + ++ GS TG D A++G+A F++ P G I TR G F Sbjct: 61 ATPSGFTLGFGSRMSQVTVNYAQGSIQETGNMTDLAIQGNAMFSVMLPGGDIAYTRGGDF 120 Query: 107 KVTDD------GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG----KVIA 156 + D LV+ G Y VL+ I P + ++ +G I + Sbjct: 121 HIQPDPDDAESAFLVNQLG-YVVLNSEGDSITFPSDAK-LSIDAEGNILATNGEGTTEVG 178 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL---------SGVTVKRGFLEDSNANSM 207 + L + + V+++ + P E + ++++G LE SN + Sbjct: 179 RIALLTAERPDALVQKDGNLFVLAAGLDPAEAMVDNLSLPQEQRASLRQGALEASNVDLT 238 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 M +M+ + + + + + ++M+ N+ Sbjct: 239 EAMAEMLQVQRAYQLTARAL-TSGETMMGLANNL 271 >gi|157155680|ref|YP_001462311.1| flagellar basal body rod protein FlgF [Escherichia coli E24377A] gi|193064568|ref|ZP_03045648.1| flagellar basal-body rod protein FlgF [Escherichia coli E22] gi|256018666|ref|ZP_05432531.1| flagellar basal body rod protein FlgF [Shigella sp. D9] gi|260843317|ref|YP_003221095.1| flagellar component FlgF of cell-proximal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|260854560|ref|YP_003228451.1| flagellar component FlgF of cell-proximal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|260867440|ref|YP_003233842.1| flagellar component FlgF of cell-proximal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|293433367|ref|ZP_06661795.1| flagellar basal-body rod protein FlgF [Escherichia coli B088] gi|300816779|ref|ZP_07096999.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 107-1] gi|300922603|ref|ZP_07138703.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 182-1] gi|301328553|ref|ZP_07221614.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 78-1] gi|332279735|ref|ZP_08392148.1| flagellar basal-body rod protein FlgF [Shigella sp. D9] gi|157077710|gb|ABV17418.1| flagellar basal-body rod protein FlgF [Escherichia coli E24377A] gi|192927820|gb|EDV82434.1| flagellar basal-body rod protein FlgF [Escherichia coli E22] gi|257753209|dbj|BAI24711.1| flagellar component FlgF of cell-proximal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|257758464|dbj|BAI29961.1| flagellar component FlgF of cell-proximal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|257763796|dbj|BAI35291.1| flagellar component FlgF of cell-proximal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|291324186|gb|EFE63608.1| flagellar basal-body rod protein FlgF [Escherichia coli B088] gi|300421080|gb|EFK04391.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 182-1] gi|300530553|gb|EFK51615.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 107-1] gi|300844945|gb|EFK72705.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 78-1] gi|323156884|gb|EFZ43018.1| flagellar basal-body rod protein FlgF [Escherichia coli EPECa14] gi|323175692|gb|EFZ61286.1| flagellar basal-body rod protein FlgF [Escherichia coli 1180] gi|323185800|gb|EFZ71161.1| flagellar basal-body rod protein FlgF [Escherichia coli 1357] gi|324117352|gb|EGC11259.1| flagellar basal-body rod protein FlgF [Escherichia coli E1167] gi|332102087|gb|EGJ05433.1| flagellar basal-body rod protein FlgF [Shigella sp. D9] Length = 251 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A++S G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQSADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPILQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|26247217|ref|NP_753257.1| flagellar basal body rod protein FlgF [Escherichia coli CFT073] gi|91210229|ref|YP_540215.1| flagellar basal body rod protein FlgF [Escherichia coli UTI89] gi|117623263|ref|YP_852176.1| flagellar basal body rod protein FlgF [Escherichia coli APEC O1] gi|227886565|ref|ZP_04004370.1| flagellar basal body rod protein FlgF [Escherichia coli 83972] gi|237706937|ref|ZP_04537418.1| flagellar basal-body rod protein flgF [Escherichia sp. 3_2_53FAA] gi|300974381|ref|ZP_07172593.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 45-1] gi|301051139|ref|ZP_07197969.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 185-1] gi|26107618|gb|AAN79817.1|AE016759_91 Flagellar basal-body rod protein flgF [Escherichia coli CFT073] gi|91071803|gb|ABE06684.1| flagellar basal-body rod protein FlgF [Escherichia coli UTI89] gi|115512387|gb|ABJ00462.1| flagellar basal-body rod protein FlgF [Escherichia coli APEC O1] gi|226898147|gb|EEH84406.1| flagellar basal-body rod protein flgF [Escherichia sp. 3_2_53FAA] gi|227836769|gb|EEJ47235.1| flagellar basal body rod protein FlgF [Escherichia coli 83972] gi|294491134|gb|ADE89890.1| flagellar basal-body rod protein FlgF [Escherichia coli IHE3034] gi|300297160|gb|EFJ53545.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 185-1] gi|300410624|gb|EFJ94162.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 45-1] gi|307553079|gb|ADN45854.1| flagellar basal-body rod protein FlgF [Escherichia coli ABU 83972] gi|307627453|gb|ADN71757.1| flagellar basal body rod protein FlgF [Escherichia coli UM146] gi|315287368|gb|EFU46779.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 110-3] gi|315291071|gb|EFU50434.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 153-1] gi|320196441|gb|EFW71064.1| Flagellar basal-body rod protein FlgF [Escherichia coli WV_060327] gi|323953237|gb|EGB49103.1| flagellar basal-body rod protein FlgF [Escherichia coli H252] gi|323957901|gb|EGB53613.1| flagellar basal-body rod protein FlgF [Escherichia coli H263] Length = 251 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|16760054|ref|NP_455671.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142175|ref|NP_805517.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161843|ref|ZP_03347553.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424681|ref|ZP_03357446.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582038|ref|ZP_03363864.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213613180|ref|ZP_03371006.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648927|ref|ZP_03378980.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865504|ref|ZP_03387623.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828579|ref|ZP_06546404.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298925|pir||AC0640 probable flagellar basal-body rod protein FlgF (proximal rod protein) STY1217 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502348|emb|CAD08302.1| putative flagellar basal-body rod protein FlgF (proximal rod protein) [Salmonella enterica subsp. enterica serovar Typhi] gi|29137805|gb|AAO69366.1| putative flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 90/252 (35%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTQGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ E + G IS + + L + ++ V+ Sbjct: 118 -HPVIGEGG-PITVPEGSE-ITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ E + + G LE SN + M MI ++F Sbjct: 173 RSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VITSVDENEGRA 244 >gi|51894143|ref|YP_076834.1| flagellar basal body and hook proteins [Symbiobacterium thermophilum IAM 14863] gi|51857832|dbj|BAD41990.1| flagellar basal body and hook proteins [Symbiobacterium thermophilum IAM 14863] Length = 231 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 41/256 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV----GAIKNDID 53 M + + R +ADN++N +T GF+ +F ++ G + Sbjct: 1 MIRGIEASRSGMAVEQLRTDVLADNIANMNTSGFKRATATSVEFDRMLIHRMGDPTDPRS 60 Query: 54 QKISFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKV 108 Q++ + +G + + + G TG LD ALEG WF + P G + TR+G F+ Sbjct: 61 QEVGTLGNGSRVDQVVVDERQGDIYETGRALDLALEGPGWFLAQRPDGSLYRTRNGAFRQ 120 Query: 109 TDDGSLVSASGKYPVLDMAS--VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 DG++ +A G +++ VP+ +P + F G I G I + L Sbjct: 121 MADGTITTAEGYRVLMEAPGGLVPLVVPGVEPTFQ--ADGTILADGMPIGRLAL------ 172 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + + LE SN + EM +I + + Sbjct: 173 -------------------ADAAPETRLHSRRLEASNVDLAKEMTDLIVTLRAYQVNQRA 213 Query: 227 IDENEKSMLEAIRNIA 242 + ++++ A+ I Sbjct: 214 LRVQDETLARAVTEIG 229 >gi|168783607|ref|ZP_02808614.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4076] gi|188999091|gb|EDU68077.1| flagellar basal-body rod protein FlgF [Escherichia coli O157:H7 str. EC4076] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADITPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMTDMIATARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + A Sbjct: 233 VITTVNDNPGRA 244 >gi|168822621|ref|ZP_02834621.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|204930894|ref|ZP_03221767.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320353|gb|EDZ05557.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205340993|gb|EDZ27757.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086382|emb|CBY96155.1| Flagellar basal-body rod protein flgF putative proximal rod protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 90/252 (35%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ E + G IS + + L + ++ V+ Sbjct: 118 -HPVIGEGG-PITVPEGAE-ITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ E + + G LE SN + M MI ++F Sbjct: 173 RSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VITSVDENEGRA 244 >gi|191168482|ref|ZP_03030270.1| flagellar basal-body rod protein FlgF [Escherichia coli B7A] gi|190901501|gb|EDV61262.1| flagellar basal-body rod protein FlgF [Escherichia coli B7A] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPILQADPTLRVMPGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|218549195|ref|YP_002382986.1| flagellar basal body rod protein FlgF [Escherichia fergusonii ATCC 35469] gi|218356736|emb|CAQ89364.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia fergusonii ATCC 35469] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTQRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPGGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 +PV+ A PI +P+ E + G IS +A +G L V S V+R Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGKLKLVKASDNEVQRG 174 Query: 174 NSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + GI L+ + V G LE SN N++ M MI ++F +I Sbjct: 175 DDGIFRLSAESQATRGPVLQADPSLRVMSGVLEGSNVNAVSAMSDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 + + A Sbjct: 235 SSVDDNEGRA 244 >gi|218553655|ref|YP_002386568.1| flagellar basal body rod protein FlgF [Escherichia coli IAI1] gi|218360423|emb|CAQ97977.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli IAI1] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A++S G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQSADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDLANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPILQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|331646335|ref|ZP_08347438.1| flagellar basal-body rod protein FlgF [Escherichia coli M605] gi|222032830|emb|CAP75569.1| flagellar basal-body rod protein flgF [Escherichia coli LF82] gi|281178186|dbj|BAI54516.1| flagellar basal-body rod protein FlgF [Escherichia coli SE15] gi|312945639|gb|ADR26466.1| flagellar basal body rod protein FlgF [Escherichia coli O83:H1 str. NRG 857C] gi|330910891|gb|EGH39401.1| flagellar basal-body rod protein FlgF [Escherichia coli AA86] gi|331045087|gb|EGI17214.1| flagellar basal-body rod protein FlgF [Escherichia coli M605] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLVVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|238919260|ref|YP_002932775.1| flagellar basal-body rod protein FlgF, [Edwardsiella ictaluri 93-146] gi|238868829|gb|ACR68540.1| flagellar basal-body rod protein FlgF, putative [Edwardsiella ictaluri 93-146] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + A+NM+N+ T GFR V + + + V Sbjct: 1 MDHAIYTAMDAASQTLNLQAVAANNMANSTTPGFRAQLAAMRAV--PVDGESLDTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + +G F TG LD AL+ D W L+ G TRDG +++ DG L + G Sbjct: 59 ASTPMNDLSMGRFDYTGRPLDVALQQDGWLELQMSNGTEAYTRDGNLQISPDGML-TVEG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 +PV+ PI +P + + + G I+ G I + L S+ V Sbjct: 118 -HPVMGDNG-PISVPDRAQ-LTIAADGTITALGAGDNPNATTQIGRLKLVKATASE--VV 172 Query: 172 RENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + G+ L V V G LE SN + M MI ++F Sbjct: 173 HGDDGLFHLSAEAEQKRGASLPLDPTVKVMPGVLEGSNVQPVEAMISMISNARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + +A Sbjct: 233 VIRSVDDNEQKA 244 >gi|323174794|gb|EFZ60409.1| flagellar basal-body rod protein FlgF [Escherichia coli LT-68] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAMPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|323190589|gb|EFZ75861.1| flagellar basal-body rod protein FlgF [Escherichia coli RN587/1] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVGGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVLSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|323947621|gb|EGB43625.1| flagellar basal-body rod protein FlgF [Escherichia coli H120] Length = 251 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + ++V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPILQADPTLSVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|239815248|ref|YP_002944158.1| hypothetical protein Vapar_2263 [Variovorax paradoxus S110] gi|239801825|gb|ACS18892.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 259 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 110/261 (42%), Gaps = 24/261 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK--------FSEVVGAIKNDI 52 M I L + RL ++ NM+N T G++ FS+ + + Sbjct: 1 MSDVLAISLNSMQQDMARLERISMNMANATTPGYKREVASSLQVGAGAFSDALREARAST 60 Query: 53 --DQKISFVASGK--EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + A+G GS STG LD AL +F + + G+ TR G +++ Sbjct: 61 LAGRAAGSPAAGTLLVQTDARPGSLKSTGQSLDVALTAAGFFEVSTDAGLAYTRQGSWQL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-------QKGKVIATMGLY 161 G LV+A G +PV+ + I + + + + + G++ + + + + Sbjct: 121 DARGRLVTAQG-HPVMGVGGE-IVLSRPNPV--IDASGQVFESKPGGGAESTPVGQLKVV 176 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + + F R + P + + + V +++GF+E+SN +SM EM Q+I + F Sbjct: 177 RFENTDDFQRMGGGLMRTEQQPAQVAE-ADVQLRQGFVENSNVSSMQEMAQLIQSMRHFE 235 Query: 222 SITTLIDENEKSMLEAIRNIA 242 S+ + ++ + A+R + Sbjct: 236 SMQRVALGYDEMIGGAVRKLG 256 >gi|301023264|ref|ZP_07187061.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 69-1] gi|284920900|emb|CBG33963.1| flagellar basal-body rod protein FlgF [Escherichia coli 042] gi|300397109|gb|EFJ80647.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 69-1] Length = 251 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L+ Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLIIQ-- 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 117 GHPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|215486286|ref|YP_002328717.1| flagellar basal body rod protein FlgF [Escherichia coli O127:H6 str. E2348/69] gi|306814074|ref|ZP_07448247.1| flagellar basal body rod protein FlgF [Escherichia coli NC101] gi|312968849|ref|ZP_07783056.1| flagellar basal-body rod protein FlgF [Escherichia coli 2362-75] gi|331657139|ref|ZP_08358101.1| flagellar basal-body rod protein FlgF [Escherichia coli TA206] gi|215264358|emb|CAS08715.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O127:H6 str. E2348/69] gi|305852711|gb|EFM53159.1| flagellar basal body rod protein FlgF [Escherichia coli NC101] gi|312286251|gb|EFR14164.1| flagellar basal-body rod protein FlgF [Escherichia coli 2362-75] gi|331055387|gb|EGI27396.1| flagellar basal-body rod protein FlgF [Escherichia coli TA206] Length = 251 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLLADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|324007917|gb|EGB77136.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 57-2] Length = 251 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS ++ + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVALVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLLADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|293414370|ref|ZP_06657019.1| flagellar basal-body rod protein FlgF [Escherichia coli B185] gi|291434428|gb|EFF07401.1| flagellar basal-body rod protein FlgF [Escherichia coli B185] Length = 251 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGLVLQADPTLRVMSGVLEGSNVNTVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|309798071|ref|ZP_07692446.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 145-7] gi|308118354|gb|EFO55616.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 145-7] Length = 251 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A++S G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQSADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGGE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI + + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPILQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|300954383|ref|ZP_07166837.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 175-1] gi|300318619|gb|EFJ68403.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 175-1] Length = 251 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGGLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|312884833|ref|ZP_07744525.1| putative flagellar basal-body rod protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367485|gb|EFP95045.1| putative flagellar basal-body rod protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 243 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 110/248 (44%), Gaps = 12/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + A+N+SN DT GFR + S V +K + V Sbjct: 1 MDSLLFTAASGASRVLKAQHVRANNLSNADTAGFRADMERVSSV--PLKGAGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ +FA+++P G TR G KV + G+ V+ +G Sbjct: 59 TNSASTRFDAGDMVKTGRALDAAIMGEGYFAVQTPNGEEAYTRAGNLKVDEFGA-VTVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENS 175 + V+ P+ +P + + E+G IS G + GL V + +++ Sbjct: 118 -FAVIGDGG-PLVLPDY-QKIQISERGVISLTPPGGGAEVNAGGLKLVKPEPNQLEKQSD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 G+ ++ P + V V +E SN +++ E+ ++ L++ F ++ +++ Sbjct: 175 GLLHSVTGNPFDADPLVQVAPEHIEGSNVSAIDELVNVMSLSRNFEMQFRMMKTA-ETLA 233 Query: 236 EAIRNIAS 243 ++ + S Sbjct: 234 KSGNKLMS 241 >gi|16764534|ref|NP_460149.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161614599|ref|YP_001588564.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553034|ref|ZP_02346784.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994042|ref|ZP_02575134.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234104|ref|ZP_02659162.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237260|ref|ZP_02662318.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244777|ref|ZP_02669709.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264029|ref|ZP_02686002.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467130|ref|ZP_02700972.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446055|ref|YP_002040432.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449678|ref|YP_002045177.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470312|ref|ZP_03076296.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736339|ref|YP_002114177.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197265515|ref|ZP_03165589.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245943|ref|YP_002215959.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390876|ref|ZP_03217487.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353084|ref|YP_002226885.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857314|ref|YP_002243965.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584318|ref|YP_002638116.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911002|ref|ZP_04654839.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|120298|sp|P16323|FLGF_SALTY RecName: Full=Flagellar basal-body rod protein flgF; AltName: Full=Putative proximal rod protein gi|47676|emb|CAA36313.1| flgF protein product (AA 1-251) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419695|gb|AAL20108.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161363963|gb|ABX67731.1| hypothetical protein SPAB_02349 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404718|gb|ACF64940.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407982|gb|ACF68201.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456676|gb|EDX45515.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711841|gb|ACF91062.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630350|gb|EDX48976.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197243770|gb|EDY26390.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289883|gb|EDY29244.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940459|gb|ACH77792.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603321|gb|EDZ01867.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205272865|emb|CAR37794.1| putative flagellar basal-body rod protein FlgF (proximal rod protein) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322401|gb|EDZ10240.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328032|gb|EDZ14796.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331944|gb|EDZ18708.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336412|gb|EDZ23176.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347326|gb|EDZ33957.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709117|emb|CAR33450.1| putative flagellar basal-body rod protein FlgF (proximal rod protein) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468845|gb|ACN46675.1| putative flagellar basal-body rod protein FlgF (proximal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246389|emb|CBG24198.1| putative flagellar basal-body rod protein FlgF (proximal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992952|gb|ACY87837.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157719|emb|CBW17211.1| putative flagellar basal-body rod protein FlgF (proximal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912165|dbj|BAJ36139.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223796|gb|EFX48859.1| Flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616548|gb|EFY13457.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620511|gb|EFY17375.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622505|gb|EFY19350.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629656|gb|EFY26431.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632624|gb|EFY29370.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636881|gb|EFY33584.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641581|gb|EFY38219.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644071|gb|EFY40617.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650029|gb|EFY46447.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653954|gb|EFY50277.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658486|gb|EFY54748.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663344|gb|EFY59546.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670078|gb|EFY66218.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674858|gb|EFY70949.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676672|gb|EFY72739.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682594|gb|EFY78613.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686653|gb|EFY82632.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714165|gb|EFZ05736.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129448|gb|ADX16878.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195767|gb|EFZ80943.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198341|gb|EFZ83445.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323209178|gb|EFZ94115.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209682|gb|EFZ94611.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217862|gb|EGA02577.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222150|gb|EGA06534.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224922|gb|EGA09180.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229664|gb|EGA13787.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232889|gb|EGA16985.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240624|gb|EGA24666.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242938|gb|EGA26959.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250255|gb|EGA34144.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252630|gb|EGA36468.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258842|gb|EGA42495.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261031|gb|EGA44624.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266940|gb|EGA50425.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269981|gb|EGA53430.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623707|gb|EGE30052.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628164|gb|EGE34507.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988069|gb|AEF07052.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 251 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 90/252 (35%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ E + G IS + + L + ++ V+ Sbjct: 118 -HPVIGEGG-PITVPEGSE-ITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ E + + G LE SN + M MI ++F Sbjct: 173 RSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VITSVDENEGRA 244 >gi|146311247|ref|YP_001176321.1| flagellar basal body rod protein FlgF [Enterobacter sp. 638] gi|145318123|gb|ABP60270.1| flagellar basal-body rod protein FlgF [Enterobacter sp. 638] Length = 251 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 92/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNAMRAV--PVEGLTLPTRTLVI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQMDYTSRPLDVALQQDGWLAVQAADGSEGYTRNGNIQVDSTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMS----- 166 +PV+ + P+ +P+ E + G IS + + L + + Sbjct: 118 -HPVIGESG-PLTVPEGSE-ITIAADGTISALNPGDPPNTVAPVGKLKLVKAEGNEVTRG 174 Query: 167 -QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 G R S ++ L+ + + G LE SN + M MI ++F Sbjct: 175 DDGLFRTSASALAAR--GATLQPDPSIRIMSGVLEGSNVKPVAAMTDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VITSVDENAGRA 244 >gi|85859195|ref|YP_461397.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] gi|85722286|gb|ABC77229.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] Length = 255 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTG 77 +L A+N++N T GF+ V+F + + G+ T Sbjct: 36 KLDCSANNIANVSTPGFK---VEFLNYLMRDSGRSSNDKAPSYDELLTRDYSSGALQRTD 92 Query: 78 TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 L+ AL G+ +F +++ +G+ TR G F + LV+ SG PVL I Sbjct: 93 NPLEVALLGEGFFIIQTAKGVAYTRRGDFTLNMKRELVTKSGD-PVLGKTG---TIVLNG 148 Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 E + E G + + + + S + + GI + ++ V G Sbjct: 149 EDVRIDESGNVHIGENQVGQLKIVSFKNPE-VLTSSGEGIFRDEGKGIFQENFTPKVVYG 207 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTL---IDENEKSMLEAIRNIA 242 LE SN +++ EM QMI L + F + L IDE +K I + Sbjct: 208 SLELSNVSAIKEMIQMIDLQRTFETYQKLIHSIDEQDKLSAGRIGKVG 255 >gi|261339377|ref|ZP_05967235.1| flagellar basal-body rod protein FlgF [Enterobacter cancerogenus ATCC 35316] gi|288318178|gb|EFC57116.1| flagellar basal-body rod protein FlgF [Enterobacter cancerogenus ATCC 35316] Length = 251 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 98/257 (38%), Gaps = 23/257 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V+ G L + G Sbjct: 59 ASTPGADMTPGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGNIQVSATGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A P+ +P+ E + G +S + + L D + V+ Sbjct: 118 -HPVMGEAG-PLTVPEGSE-LTIAADGTVSALNPGDPANTVAPVGRLKLVKADARE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ T + + V G LE SN + M MI ++F Sbjct: 173 RGDDGMFRLTQATQATRGATLQADPSIRVMSGVLEGSNVKPVEAMTDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEAIRNIA 242 +I +++ +A + +A Sbjct: 233 IISSVDENANKANQLLA 249 >gi|56413835|ref|YP_150910.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362758|ref|YP_002142395.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128092|gb|AAV77598.1| putative flagellar basal-body rod protein FlgF (proximal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094235|emb|CAR59740.1| putative flagellar basal-body rod protein FlgF (proximal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 251 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ + + G IS + + L + ++ V+ Sbjct: 118 -HPVIGEGG-PITVPEG-SVITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ E + + G LE SN + M MI ++F Sbjct: 173 RSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VITSVDENEGRA 244 >gi|212709493|ref|ZP_03317621.1| hypothetical protein PROVALCAL_00535 [Providencia alcalifaciens DSM 30120] gi|212687831|gb|EEB47359.1| hypothetical protein PROVALCAL_00535 [Providencia alcalifaciens DSM 30120] Length = 251 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 90/250 (36%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + S V++N++N T GF+ V I D +Q + V Sbjct: 1 MDHVIYTAMGGARHALENQSIVSNNIANVSTAGFKAQLSAMRAV--PIHGDTEQTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G TG +D AL + A+ G TR+G +++ DG L+ Sbjct: 59 ASTPGADMSQGQLNYTGRPMDVALNDKHFLAVALGDGTEAYTRNGNIQISPDGELMIGE- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 VL I +P E +G G I+ ++ +G L V+ + R Sbjct: 118 --RVLQGDGGAINVPPNAE-LTIGNDGTITALLATDPPTMLGQIGRLKVVEAQAQDLVRG 174 Query: 174 NSGISPNIPPTPLEDLSG------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G+ P + +G V G +E SN N+ M MI + F +I Sbjct: 175 EDGLFHLSPQAQAANGNGLPMSERAIVTSGVIEGSNVNAAEAMVSMIANARHFEMQMKVI 234 Query: 228 DENEKSMLEA 237 +++ A Sbjct: 235 RSADENAQRA 244 >gi|323976550|gb|EGB71638.1| flagellar basal-body rod protein FlgF [Escherichia coli TW10509] Length = 251 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTDDGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E V G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITVAADGTISALNSGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|167770195|ref|ZP_02442248.1| hypothetical protein ANACOL_01538 [Anaerotruncus colihominis DSM 17241] gi|167667517|gb|EDS11647.1| hypothetical protein ANACOL_01538 [Anaerotruncus colihominis DSM 17241] Length = 273 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 108/282 (38%), Gaps = 51/282 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M +F G++ +A +Q + V++N++N +TVG++ + FS+++ Sbjct: 1 MNIAFYNGVSGLVAYQQEMDLVSNNVANVNTVGYKPSRASFSDLLYTQMWTNTDALVNAG 60 Query: 49 -------------------KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAW 89 + I + V L G+ + T LD A++GD + Sbjct: 61 GDAGAQDTADENGVGGMTDADGIHMQGHGVRLAYSDLVFRQGNLLQTEHPLDMAIKGDGF 120 Query: 90 FALESPRGII-LTRDGRFKVT---DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 FA+E G TR+G F ++ G LV++ G Y VLD + I++ + D+ Sbjct: 121 FAVERANGTTEYTRNGAFDISIEGKSGYLVTSDGSY-VLDASGKRIKLDRGDDDQ----- 174 Query: 146 GEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV------TVKRGFL 199 + +G+Y G I TP + T+ G L Sbjct: 175 ---FDLTNLQDEVGVYIFPNPYGLEPNTGGFRETPISGTPTVIKASSRASRPYTIVTGML 231 Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E S + EM +I + F ++ ++ + + + N+ Sbjct: 232 EQSAVDLSEEMANIIVSQRAFQFSAKMVQTADE-IEDTVNNL 272 >gi|62179695|ref|YP_216112.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127328|gb|AAX65031.1| flagellar biosynthesis, cell-proximal portion of basal-body rod [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 251 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 90/252 (35%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ E + G IS + + L + ++ V+ Sbjct: 118 -HPVIGEGG-PITVPEGSE-ITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ E + + G LE SN + M MI ++F Sbjct: 173 RSDDGLFRLTTEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VITSVDENEGRA 244 >gi|254519397|ref|ZP_05131453.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] gi|226913146|gb|EEH98347.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] Length = 257 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 110/258 (42%), Gaps = 17/258 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M + G A + +L +++N++N+ T+G++ I V F +++ + ++ K Sbjct: 1 MLRTLWTGKTGMNANQDKLDAISNNIANSTTMGYKKIDVGFKDLLTESLDRNGIPLNDKD 60 Query: 57 SFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 S + +G + G T D +++G +F + S G TRDG + Sbjct: 61 SVIGTGTRTSEWFRDNSQGMLQETLRSTDLSIDGLGYFKIISDNGQEAYTRDGALAIDSR 120 Query: 112 GSLVSASGKYPVLD--MASVPIQIPQKDEIFNVGEKGEISQKGK----VIATMGLYSVDM 165 G LV G L+ + + F V +KG++ K K +A + +Y+ Sbjct: 121 GRLVDNRGNKLELNYLNGYSEGNVVFNKDNFLVDKKGQVYIKDKGNFIQVAEIPVYTAVG 180 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + F+ ++ +P+ P ++ + + +G LE SN + E +MI + F + Sbjct: 181 DRAFLSIGDNLFTPS-PGVEVQRTTDFDIYQGSLEGSNVDIATEFSEMILTQRAFELSSR 239 Query: 226 LIDENEKSMLEAIRNIAS 243 + ++ M I N+ + Sbjct: 240 GVKTADE-MWGMINNMRA 256 >gi|295697724|ref|YP_003590962.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] gi|295413326|gb|ADG07818.1| fagellar hook-basal body protein [Bacillus tusciae DSM 2912] Length = 273 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 106/272 (38%), Gaps = 33/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV--------GAIK 49 M I + +A ++R VA+N+ N T G++ + F ++ Sbjct: 1 MIRGLYIAASGMIAQQRREEIVANNLVNASTPGYKQDEPSLRTFGDLFLRRLGSPASGTA 60 Query: 50 NDIDQKISFVASGKEYLS----KEVGSFISTGTELDFALEG-----------DAWFALES 94 + + + G G + T DFAL +A+FA+E Sbjct: 61 LPLAPGVGPLNLGATMEDAPPRFTPGPLVETKRNQDFALIDPPGRQSRPGGVEAFFAVEG 120 Query: 95 PRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-SQKG 152 P G I+LTRDG+F +G L + G Y VL IP + G + + G Sbjct: 121 PNGQILLTRDGQFIEGPNGQLYTGDG-YRVLAAGPNGQVIP--GSSVALDASGAVHTYDG 177 Query: 153 KVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-VTVKRGFLEDSNANSMYEM 210 G L +D ++++ +G+ P + V++GFLE SN + M Sbjct: 178 TGAEVFGGLAVLDAPVAALQKQGTGVYVLTPGAAGGLVPSLAQVRQGFLEQSNVDPGQTM 237 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 QMI + + + + +I ++SM + + + Sbjct: 238 VQMIDVVRAYEANQKVIRTVDQSMDKLVNQVG 269 >gi|149908758|ref|ZP_01897419.1| Hypothetical FlgF flagellar basal-body rod protein [Moritella sp. PE36] gi|149808300|gb|EDM68239.1| Hypothetical FlgF flagellar basal-body rod protein [Moritella sp. PE36] Length = 240 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 11/246 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 L+ + ++ A+N++N +T GF+ V I+ + S Sbjct: 1 MKLLYTALSGAEQSQTAMNIRANNLANVNTNGFKADID--RAVAYKIEGAGYETRYLSQS 58 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + G TG LD A++G+ + A+ +P G TR G + +G S +G Sbjct: 59 AASGTNFSAGKLEKTGRSLDIAIQGEGYIAVRTPGGAEAYTRAGSMTLDSEGR-ASINGN 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATMGLYSVDMSQGFVRRENSGI 177 V + P+ + +G G ++ G + + + G + + G+ Sbjct: 118 AVV--ANGAQLTFPEY-QSIEIGSDGTVTAITLGGAQVQVGQIKLIKPEAGSMVKGQDGL 174 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 V + GFLE SN N++ E+ + + ++F ++ + ++ + Sbjct: 175 LHLKAGAVGNRAEDVALVSGFLEGSNVNAVTELVSSMMVNRQFELQIKMMKTAD-TLAQK 233 Query: 238 IRNIAS 243 + S Sbjct: 234 GNQLIS 239 >gi|52787553|ref|YP_093382.1| FlhP [Bacillus licheniformis ATCC 14580] gi|163119681|ref|YP_080952.2| flagellar hook-basal body protein [Bacillus licheniformis ATCC 14580] gi|52350055|gb|AAU42689.1| FlhP [Bacillus licheniformis ATCC 14580] gi|145903191|gb|AAU25314.2| flagellar hook-basal body protein [Bacillus licheniformis ATCC 14580] Length = 275 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 117/276 (42%), Gaps = 37/276 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L++++ ++ N++NTDT G++ FSE++ +++K + VA Sbjct: 1 MLRSMITASNTMFELQKQIDNISHNLANTDTTGYKAKNTSFSELIRQQIEQVNEKNNEVA 60 Query: 61 SGK---------------EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 + + + L+ + GS TG +LD AL +F + + TRDG Sbjct: 61 ASRKTPPGLRLGVGAVMTDRLTHKQGSLKETGRDLDIALTSPYQYFQVNVGGEVQYTRDG 120 Query: 105 RFKVTD------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIA 156 F +T LV+ G + VLD I+ Q+ + V E G +S + A Sbjct: 121 AFYLTPAAGNANQMQLVTKEG-HAVLDENGNAIRFNQRYKHIKVDESGSVTVSSDNQGEA 179 Query: 157 TM----GLYSVDMSQGFVRRENSGISPNIP--PTPLEDLSG-----VTVKRGFLEDSNAN 205 + G+ Q ++ S + T L +L+G +++K+GFLE SN + Sbjct: 180 PLRFNLGIVRAVKPQALTEEGSNLFSVSDELRATALINLNGAGRQDISLKQGFLESSNVD 239 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + I ++ M I ++ Sbjct: 240 VSKEMTDLISSQRSYQMNSRAITMGDQMMG-LINSV 274 >gi|323967018|gb|EGB62444.1| flagellar basal-body rod protein FlgF [Escherichia coli M863] gi|327253476|gb|EGE65114.1| flagellar basal-body rod protein FlgF [Escherichia coli STEC_7v] Length = 251 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E V G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITVAADGTISALNSGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGMFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|296102907|ref|YP_003613053.1| flagellar basal body rod protein FlgF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057366|gb|ADF62104.1| flagellar basal body rod protein FlgF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 251 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 23/257 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V+ G L + G Sbjct: 59 ASTPGADMTPGQMDYTARPLDVALQQDGWLAVQTADGGEGYTRNGNIQVSATGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A P+ +P+ E + G IS + + L D + V+ Sbjct: 118 -HPVMGEAG-PLTVPEGSE-LTIAADGTISALNPGDPANTVAPVGRLKLVKADGKE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ L+ + V G LE SN + M MI ++F Sbjct: 173 RGDDGMFRLTQAAQATRGATLQADPTIRVMSGVLEGSNVKPVEAMTDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEAIRNIA 242 +I +++ +A + +A Sbjct: 233 IISSVDENAGKANQLLA 249 >gi|188576757|ref|YP_001913686.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576949|ref|YP_001913878.1| flagellar basal body rod protein FlgF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521209|gb|ACD59154.1| flagellar basal-body rod protein FlgF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521401|gb|ACD59346.1| flagellar basal-body rod protein FlgF [Xanthomonas oryzae pv. oryzae PXO99A] Length = 230 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 18/227 (7%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 + N++N DTVGF+ +E +I + + + + G TG LD Sbjct: 2 SHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALHVDQGF-DRSQGHQKVTGNPLDV 59 Query: 83 ALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 +L+ D W A++SP G TR+G +T +G LV+A+G + VLD P+ IP + Sbjct: 60 SLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANG-HAVLDEGGNPMTIPPH-QAME 117 Query: 142 VGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS--- 190 +G G IS Q ++ M + VD + R G+ N P + + Sbjct: 118 IGSDGSISIIPQGEGPQTMAIVGKMKV--VDAPADRLTRRPDGLMRNTSTDPAQAFAVAT 175 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 G T+ G LE SN ++ + +MI L ++F +I + + A Sbjct: 176 GKTINSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNGDDNAQSA 222 >gi|89092137|ref|ZP_01165092.1| flagellar basal-body rod protein FlgF [Oceanospirillum sp. MED92] gi|89083872|gb|EAR63089.1| flagellar basal-body rod protein FlgF [Oceanospirillum sp. MED92] Length = 247 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 19/249 (7%) Query: 1 MQTSFNIGLAA----QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M + ++ LA + + +A+ +T GF+ + + + + Sbjct: 1 MDKVLYLAMSGARENMLAQQAHANNLAN----ANTTGFKADLAQARAM--QVFGEGHASR 54 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + + G+ I TG +LD ++ GD W + P G TR G ++ LV Sbjct: 55 VYAQTERPATDVTHGTLIDTGRKLDVSVTGDGWLTVIRPDGTEGYTRAGSLQINAASQLV 114 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGF 169 + SG PV+ +PI +P E + G I+ + +++ L V+ Sbjct: 115 TGSG-LPVMGNGGIPIVLPPF-ENIEIATNGTITVRPLGENATELLVADQLKLVNPDPAS 172 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 V + G+ PLE V V+ G+LE SN N++ E+ +I +++F ++ Sbjct: 173 VFKGPDGLMITGDQVPLEPDPAVQVRSGYLEASNVNAVSELTGIITSSRQFEMQIKMMKT 232 Query: 230 NEKSMLEAI 238 E++ A Sbjct: 233 AEENSESAA 241 >gi|293409443|ref|ZP_06653019.1| flagellar basal-body rod protein FlgF [Escherichia coli B354] gi|291469911|gb|EFF12395.1| flagellar basal-body rod protein FlgF [Escherichia coli B354] Length = 251 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T +D AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPMDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|161503734|ref|YP_001570846.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865081|gb|ABX21704.1| hypothetical protein SARI_01819 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 251 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 89/252 (35%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ E + G IS + + L + + V+ Sbjct: 118 -HPVIGEGG-PITVPEGAE-ITIAADGTISALNPGDPPNTVAPVGQLKLVKAEGHE--VQ 172 Query: 172 RENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ L + + G LE SN + M MI ++F Sbjct: 173 RGDDGLFRLTADAQASRGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VITSVDENEGRA 244 >gi|296331270|ref|ZP_06873742.1| flagellar basal-body rod protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676257|ref|YP_003867929.1| putative flagellar basal-body rod protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151385|gb|EFG92262.1| flagellar basal-body rod protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414501|gb|ADM39620.1| putative flagellar basal-body rod protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 270 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 107/272 (39%), Gaps = 34/272 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV----------GA 47 M +A +A ++R +++N++N +T G++ + F E++ G Sbjct: 1 MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYKADQGSMRAFPEMLLSRIESKSPAGT 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-------------WFALES 94 + +I + V + GS ST D L + ++ +++ Sbjct: 61 SRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDITLVENQVPVNTETNENAALFYPVQT 120 Query: 95 PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 GI ++ F + ++ L + +G+ P+L PI + +E F V E G ++ G+ Sbjct: 121 ADGIRYSKSSTFSLNENNQL-TINGR-PILSTDGQPITV--DNENFTVSENGTVTMNGRT 176 Query: 155 IATMGLYSVDMSQGFVRRENSGISP----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + + + + R N S ++P + ++K+G E SN + Sbjct: 177 AGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSAAGNNQVSYSLKQGVSELSNVDVTSAY 236 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +M + F + +I +KSM +A I Sbjct: 237 TEMTEAYRSFEANQKVIQAYDKSMDKAANEIG 268 >gi|197251378|ref|YP_002146865.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215081|gb|ACH52478.1| flagellar basal-body rod protein FlgF [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 251 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 90/252 (35%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ E + G IS + + L + ++ V+ Sbjct: 118 -HPVIGEGG-PITVPEGSE-ITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ E + + G LE SN + M MI ++F Sbjct: 173 RSDDGLFRLTAEAQAERGAVLAANPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ A Sbjct: 233 VITSVDENEGRA 244 >gi|218557959|ref|YP_002390872.1| flagellar basal body rod protein FlgF [Escherichia coli S88] gi|218364728|emb|CAR02418.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli S88] Length = 251 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVVGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI + F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARCFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|82544457|ref|YP_408404.1| flagellar basal body rod protein FlgF [Shigella boydii Sb227] gi|187731130|ref|YP_001880751.1| flagellar basal body rod protein FlgF [Shigella boydii CDC 3083-94] gi|81245868|gb|ABB66576.1| cell-proximal portion of basal-body rod [Shigella boydii Sb227] gi|187428122|gb|ACD07396.1| flagellar basal-body rod protein FlgF [Shigella boydii CDC 3083-94] gi|320186976|gb|EFW61689.1| Flagellar basal-body rod protein FlgF [Shigella flexneri CDC 796-83] gi|332094101|gb|EGI99153.1| flagellar basal-body rod protein FlgF [Shigella boydii 3594-74] Length = 251 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKIDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + V+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HQVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|167626156|ref|YP_001676450.1| flagellar basal-body rod protein FlgF [Shewanella halifaxensis HAW-EB4] gi|167356178|gb|ABZ78791.1| flagellar basal-body rod protein FlgF [Shewanella halifaxensis HAW-EB4] Length = 244 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 13/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A+N++N DT GF+ + + +V + Q Sbjct: 1 MDRMIYTAAKGAARVMEAQAIRANNLANADTTGFKADLERVNAMVVTPTGNSLQTRVLAQ 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S++ G+ TG LD A+ FA+ + G TR G +G L + G+ Sbjct: 61 TQSNGFSQQTGAMNPTGRALDLAINDSGLFAVMTAEGEGYTRSGAITPDANGQL-TLDGR 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PV + PI +P+ E+F VG+ G +S + + + L + D+S + + Sbjct: 120 -PVAGLDG-PIVLPEYRELF-VGDDGRLSIIADEGGIIEEVGQLKLVNPDISA--MSKGL 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ PL V+V GFLE SN ++ E+ + L+++F L+ EK + Sbjct: 175 DGLLYPADRQPLPASEQVSVSSGFLEASNVQAVGELIAAMDLSRQFEVQVKLMKSAEK-L 233 Query: 235 LEAIRNI 241 EA + Sbjct: 234 AEAGNRL 240 >gi|74311639|ref|YP_310058.1| flagellar basal body rod protein FlgF [Shigella sonnei Ss046] gi|73855116|gb|AAZ87823.1| flagellar protein for cell-proximal portion of basal-body rod [Shigella sonnei Ss046] Length = 251 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + V+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HQVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|323341367|ref|ZP_08081611.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] gi|323091244|gb|EFZ33872.1| flagellar basal-body rod protein FlgG [Lactobacillus ruminis ATCC 25644] Length = 256 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 106/253 (41%), Gaps = 15/253 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +I + A + + V++N++N DT+G++ + F E++ N + +S Sbjct: 3 MSQILSISRSGLNAYQHEMDVVSNNLANVDTLGYKDKRTTFQELLNNGTNANEVGLSQNA 62 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVT 109 + + + G+F ST D A++G+ +F + + TRDG F+ Sbjct: 63 GNVAINAGLNVQQVNENLSQGAFKSTAGTYDLAIDGEGYFGVRDGANNLYLTRDGSFRRD 122 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG+LV++ G V ++VP KD ++ G +S + + L+ S Sbjct: 123 ADGNLVTSKG-MKVEVQSNVPSSQWPKDGEVSISTSGYVSIGNVRVGRILLFRPQNSIDM 181 Query: 170 VRRENSGIS--PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 N+ N+ + + + +G +E SN + M +MI + + + + Sbjct: 182 NDIGNNLYRCDGNLISSANNNAGFGQINQGLVELSNVDVADTMSKMIITQRAYQMNSKAL 241 Query: 228 DENEKSMLEAIRN 240 ++ ML+ I Sbjct: 242 QSTDE-MLQTINK 253 >gi|146305251|ref|YP_001185716.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp] gi|145573452|gb|ABP82984.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina ymp] Length = 243 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A L+ A+N++N +T GFR + V A++ Sbjct: 1 MDRLGYTAMTAASRTMSSLTVRANNLANVNTPGFRADLEQAQAV--AVEGYGYDSRHLAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 +S G+ ++TG +LD A++G FA+E G TR+G +V D L + +G Sbjct: 59 VKNNGVSLAPGALMATGRDLDVAIQGQGLFAVEGDDGAERYTRNGALQVDADLRL-TLNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 + VL PI +P+ D ++G G +S + + + + V + G + ++ Sbjct: 118 R-AVLGEGG-PIVLPEYDS-LHIGRDGTVSVIPRGDFLTAEVDRIRVVDV--AAGDLIKD 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 SG+ P ED+ + G+LE SN ++ ++ + L + F + ++ E Sbjct: 173 ASGLLARSDGQPAEDMEAPVLVSGYLEASNVGAIDQLVATMSLNRLFETQVKMMKAAED- 231 Query: 234 MLEAIRNI 241 + EA + Sbjct: 232 LSEAGNRM 239 >gi|326386930|ref|ZP_08208544.1| hypothetical protein Y88_1568 [Novosphingobium nitrogenifigens DSM 19370] gi|326208610|gb|EGD59413.1| hypothetical protein Y88_1568 [Novosphingobium nitrogenifigens DSM 19370] Length = 270 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 102/271 (37%), Gaps = 33/271 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ L+ + LS + +N++N DT GF+ V FS +V A + I + S Sbjct: 2 SYYTSLSGLQNAQTDLSVIGNNIANADTNGFKKSSVDFSNLVAASAFTNPKNIVGIGSTV 61 Query: 64 EYL--SKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSASG 119 + + G TG+ LD + GD +F S + TR+G F + G L SG Sbjct: 62 QSINQDFAQGGVKQTGSALDLMISGDGFFTTSSAVTGQVYYTRNGSFSMDGQGYLTDGSG 121 Query: 120 K----YPVLDMASVPIQIPQKDEIF------------NVGEKGEISQ-----KGKVIATM 158 +P +V P ++ V G IS VI + Sbjct: 122 NRLQVFPTDSSGNVTSTTPGSAQVPLTNAAGSQFSGATVAADGSISVSYADGSNSVIGKV 181 Query: 159 GLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 L S QG + +S P G ++ G LE SN + EM Sbjct: 182 ALASFVAPQGLKQVGSSNYTSTGISGTATYGQPSTGQYG-SLMSGSLEASNVDLSSEMVN 240 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +I Q F + ID N ++ +AI N+ S Sbjct: 241 LITAQQYFQANAKAIDANT-TINDAIINLKS 270 >gi|218700420|ref|YP_002408049.1| flagellar basal body rod protein FlgF [Escherichia coli IAI39] gi|300938642|ref|ZP_07153371.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 21-1] gi|218370406|emb|CAR18213.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli IAI39] gi|300456427|gb|EFK19920.1| flagellar basal-body rod protein FlgF [Escherichia coli MS 21-1] Length = 251 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADSSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI L+ + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAESQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|313903628|ref|ZP_07837018.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] gi|313466181|gb|EFR61705.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] Length = 275 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 35/276 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 +Q + A A +++ A N++N T GF+ + F+++V A + Sbjct: 2 IQRALWSSAAGMAAAARQVDLTAGNLANVSTPGFKAARADFADLVYAAAQVPVAPPAAAA 61 Query: 59 ----VASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKV 108 V G + G +TG+ D A+EG + + P ++LTR G F Sbjct: 62 GGVQVGHGVRLAATPRLWSQGPLQATGSPWDLAIEGAGFLQVADPGTGEVLLTRGGTFAA 121 Query: 109 TD------------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGK 153 + + LV+ P+L P+ +P + V GE+ G+ Sbjct: 122 SPVPAGVPGGGEAGEALLVTDGAGRPLLAAGGQPLLLPAGSRGWVVSPDGEVRALLAGGR 181 Query: 154 VI--ATMGLYSVDMSQGFVRRENS----GISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 + + + R G +P P +D +G +++G LE SN + Sbjct: 182 EVPAGRLAVMVPPAPDALESRGEGLYALGGNPVPAGAPGQDGAG-WIRQGMLEQSNVDLA 240 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM +++ + + + ++ ML I + S Sbjct: 241 LEMTRLLASQRAYQLNARAVLTGDE-MLSLINRLRS 275 >gi|254519398|ref|ZP_05131454.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] gi|226913147|gb|EEH98348.1| flagellar basal body rod protein FlgG [Clostridium sp. 7_2_43FAA] Length = 260 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 115/264 (43%), Gaps = 27/264 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIK------ND 51 M S ++ ++LE R + + +NMSN +T GF+ + F EV+ + N+ Sbjct: 1 MIRSLYTAVSGLISLENRQNNITNNMSNANTTGFKGDNLSIKSFDEVMIQNRDKVVNGNN 60 Query: 52 IDQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRD 103 + QK+ ++ G E + G +T + DFA+EG +FA++ + +I TRD Sbjct: 61 VVQKLGSISLGAEIDSVDTAFTQGLIKNTDKQTDFAIEGRGFFAIQRQTNNGNEVIYTRD 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 G FKV +DG L++ + + + PI + + F + + + + T+ Sbjct: 121 GNFKVGNDGYLINTNSDRVLGMNKNTGALEPIFV--GGDKFILDQNNNLYIGNRATHTLA 178 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + + ++ P + V V +G LE SN N EM MI + Sbjct: 179 TADFNDYGSLEKIGDNYFKGENPIYNAQ----VWVTQGALEGSNVNISNEMVNMITTMRN 234 Query: 220 FNSITTLIDENEKSMLEAIRNIAS 243 F + ++ ++++ +A I + Sbjct: 235 FETNQKIVQTIDETLGKAANEIGA 258 >gi|114570496|ref|YP_757176.1| flagellar basal body rod protein [Maricaulis maris MCS10] gi|114340958|gb|ABI66238.1| flagellar basal body rod protein [Maricaulis maris MCS10] Length = 249 Score = 172 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 7/248 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR--TIKVKFSEVVGAIKNDIDQKISF 58 M + IGL+ Q+ L + + VA+N++N +T GF+ ++ ++ A +D I F Sbjct: 1 MDNAMMIGLSRQMTLRRSMDVVANNIANANTAGFKVESLLLENRAAPTATHDDGPADIQF 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V + G TG E D A++G +FA+ES TRDGRF++ G LV++ Sbjct: 61 VNTWGMARDFRQGELAFTGREFDLAIDGGGFFAVESNGEEQFTRDGRFRLDGAGQLVASD 120 Query: 119 GKYPVLDMAS-VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G PVLD + PI I + E G I Q + I +G++ + ++ N Sbjct: 121 GA-PVLDADTRGPILIDASAGSVQIVEGGMIMQNDQQIGRIGVFEIANRSEMSKQGNGRY 179 Query: 178 SPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + P + TV +GF+E SN S+ E+ M+ + + + S++ +++ E Sbjct: 180 TIPPIEDPANEPLAMIDATVSQGFVEQSNVQSILELTDMMSVMRSYQSVSKFLEQAEDLS 239 Query: 235 LEAIRNIA 242 AI + Sbjct: 240 KRAIERLG 247 >gi|74101659|gb|AAZ99749.1| FlgFL [Aeromonas hydrophila] Length = 244 Score = 172 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 97/247 (39%), Gaps = 17/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFV 59 M+ ++ A+N++N +T GF + F V A+ D Sbjct: 1 MEKLIYTAMSGAQHTLMAQQIRANNLANVNTAGF---RTDFERVSAYALTGDGYLSRVMA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + G+ + TG +LD A+ G+ + +++ G TR G +V +G L++ + Sbjct: 58 REEMAGTDFKAGALMQTGRKLDVAVRGEGFITVQTADGKEAYTRAGNLEVDAEG-LLTLN 116 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQGFVRR 172 G+ PVL + +P + G+ G +S + + L + D + + + Sbjct: 117 GR-PVLGDGGE-MVLPAY-RDLSFGKDGSLSITPPGGGARLDVGRLKLVNPDPVE--LVK 171 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ E V + GFLE +N N++ E+ + LT+ F L+ + Sbjct: 172 GPDGLFRLRQGGDAETSEQVVLASGFLEGANVNAVDELISSMSLTRNFELQVKLMKTADD 231 Query: 233 SMLEAIR 239 + R Sbjct: 232 QARQGAR 238 >gi|254712013|ref|ZP_05173824.1| flagellar basal body rod protein FlgG [Brucella ceti M644/93/1] gi|254715082|ref|ZP_05176893.1| flagellar basal body rod protein FlgG [Brucella ceti M13/05/1] gi|261216792|ref|ZP_05931073.1| flagellar basal-body rod protein FlgG [Brucella ceti M13/05/1] gi|261319659|ref|ZP_05958856.1| flagellar basal-body rod protein FlgG [Brucella ceti M644/93/1] gi|260921881|gb|EEX88449.1| flagellar basal-body rod protein FlgG [Brucella ceti M13/05/1] gi|261292349|gb|EEX95845.1| flagellar basal-body rod protein FlgG [Brucella ceti M644/93/1] Length = 241 Score = 172 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 33/228 (14%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA------IKNDIDQK 55 + I A + L +A+N++N +T GF+ + +F++++ + N +Q Sbjct: 1 MKALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAGVPNQANQA 60 Query: 56 I----SFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 I + V G + + GSF TG D AL G WF ++SP G + TR G F Sbjct: 61 IVPEGALVGLGVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 DG LV+ G PV I IP + + G++ K + + + L Sbjct: 121 NKNADGQLVTLDGN-PVEPA----ITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTL 175 Query: 161 YSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 + G + RE + P + G ++K+G+LE S Sbjct: 176 ANFTNEAGLEPLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEAS 222 >gi|120597306|ref|YP_961880.1| flagellar basal-body rod protein FlgF [Shewanella sp. W3-18-1] gi|146294549|ref|YP_001184973.1| flagellar basal-body rod protein FlgF [Shewanella putrefaciens CN-32] gi|120557399|gb|ABM23326.1| flagellar basal-body rod protein FlgF [Shewanella sp. W3-18-1] gi|145566239|gb|ABP77174.1| flagellar basal-body rod protein FlgF [Shewanella putrefaciens CN-32] Length = 244 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 9/245 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ + + + + S A+N++N +T GF+ + + V A + + Sbjct: 1 MEKMLYTAASGAVRILEAQSIRANNLANAETAGFKADLERVNAVALAAQGNSLNTRVMAQ 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S + G TG LD A+ F + G TR G +G L + G+ Sbjct: 61 TENSGFSHQSGVINPTGRTLDLAIRDRGLFTVAVEGGEAYTRSGALIANAEGEL-TIDGR 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATMG-LYSVDMSQGFVRRENSG 176 PVL PI +P+ ++F +GE G +S +G +I +G L V+ +++ G Sbjct: 120 -PVLGNDG-PIVLPEHKDLF-IGEDGTVSVLPSEGGIIEEVGRLKLVNPDLALMQKGQDG 176 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + + GV V GFLE SN ++ E+ + L+++F L+ EK + E Sbjct: 177 LLYGRDGQLMAQDDGVLVDSGFLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEK-LAE 235 Query: 237 AIRNI 241 A + Sbjct: 236 AGNRL 240 >gi|268589981|ref|ZP_06124202.1| flagellar basal-body rod protein FlgF [Providencia rettgeri DSM 1131] gi|291314699|gb|EFE55152.1| flagellar basal-body rod protein FlgF [Providencia rettgeri DSM 1131] Length = 251 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 92/255 (36%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + V++N++N T GF+ V I D +Q + V Sbjct: 1 MDHVIYTAMGGARHALENQAIVSNNIANVSTAGFKAQLSAMRAV--PIHGDSEQTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G TG + D AL + A+E G TR+G +V+ +G LV G Sbjct: 59 ASTPGADMSQGPLNYTGKQTDVALNDKHFLAVELADGTEAYTRNGNIQVSSEGELVI--G 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSV--DMSQGFVRR 172 + + PI +P E +G G ++ ++ +G V Q +R Sbjct: 117 ERRLQGDGG-PINVPPNAE-LTIGADGTVTALLATDPPTMLGQIGRLKVVEAQPQDLIRG 174 Query: 173 ENSGI-----SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 E+ L V G +E SN N+ M MI + F ++ Sbjct: 175 EDGLFHLSPQGQAANGNALPQSERGIVTAGVIEGSNVNAAEAMVSMIANARHFEMQMKVV 234 Query: 228 DENEKSMLEAIRNIA 242 +++ A + +A Sbjct: 235 RSADENAQRANQLLA 249 >gi|255523696|ref|ZP_05390662.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] gi|296186699|ref|ZP_06855101.1| flagellar hook-basal body protein [Clostridium carboxidivorans P7] gi|255512565|gb|EET88839.1| protein of unknown function DUF1078 domain protein [Clostridium carboxidivorans P7] gi|296048736|gb|EFG88168.1| flagellar hook-basal body protein [Clostridium carboxidivorans P7] Length = 338 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 54/335 (16%), Positives = 107/335 (31%), Gaps = 96/335 (28%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ +++L + +N++N+ T ++T + +F ++V S Sbjct: 1 MLPSMFSGISGLKVNQRKLDVIGNNIANSSTTAYKTQRARFEDMVSQSMASATGASSKLG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------- 92 V S GS T LD A++GD +F + Sbjct: 61 GTNPRQVGLGVQLAGIDTSTGQGSMQPTSAPLDVAIDGDGYFIVGTGAVPEDSGTVQITV 120 Query: 93 -------ESPRG--IILTRDGRFKVTDDGSLVSASGKYP--------------------- 122 SP G TRDG F + G+L+++ G Sbjct: 121 TDDEKHTMSPDGVTTSFTRDGSFTLDTQGNLLTSDGLRVYGYANSKVSITYSKDPKVACT 180 Query: 123 --------------VLDMASVPIQIPQ---------KDEIFNVGEKGEISQK----GKVI 155 + VP+ IP+ + + +++G G I+ V+ Sbjct: 181 GTYDANAEGGADTEMNAEGLVPLVIPEYLTAGDKNHRIKSYSIGSDGTITATLDSGTAVL 240 Query: 156 ATMGLYSVDMSQGFVRRENSGIS-PNIPPTPLEDLSGVTV----------KRGFLEDSNA 204 + + S G + + P+ + + ++G LE SN Sbjct: 241 GQIAMASFKNPAGLSKLGKNLYQISPNSGDPVVRSTSTSSDDNSAAYGDARQGMLEMSNV 300 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E MI + F + +I ++ + + + Sbjct: 301 DLAEEFTNMIIANRAFQANGKIITTGDEILQDLVN 335 >gi|330501138|ref|YP_004378007.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina NK-01] gi|328915424|gb|AEB56255.1| flagellar basal-body rod protein FlgF [Pseudomonas mendocina NK-01] Length = 243 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 15/239 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A L+ A+N++N +T GFR + V A++ Sbjct: 1 MDRLGYTAMTAASRTMSSLTVRANNLANVNTPGFRADLEQAQAV--AVEGYGYDSRHLAR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ G ++TG +LD A++G FA+E G TR+G +V + L + +G Sbjct: 59 VKNNGVNLAPGELMATGRDLDVAIQGRGLFAVEGDDGAERYTRNGALQVDAELRL-TLNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 + VL PI +P+ D ++G G +S + + + + VD + + ++ Sbjct: 118 R-AVLGEGG-PIVLPEYDS-LHIGRDGTVSVIPRGDFVTAEVDRIRVVDVDAAD--LTKD 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 SG+ I P E L + G+LE SN ++ ++ + L + F + ++ E Sbjct: 173 ASGLLTRIDGQPAEGLDAPVLASGYLEASNVGAIDQLVATMSLNRLFETQVKMMKAAED 231 >gi|291562041|emb|CBL40857.1| fagellar hook-basal body proteins [butyrate-producing bacterium SS3/4] Length = 265 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 35/270 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV----GAIKNDID 53 M F + L + L+T+++NM N T G++ + F E + G + Sbjct: 1 MYQGFYNLASGMLTQSRNLNTISNNMVNIQTPGYKNETMVSSTFKEEMLYRTGQYSKENP 60 Query: 54 QKISFVA----SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 +++ V+ + + Y + + G T DFAL G+ +F +++ +GI TR+G F V Sbjct: 61 TQLATVSKIKTAKQVYTNYDQGGLEQTDGIYDFALNGNGFFCIQTSQGIRYTRNGSFSVD 120 Query: 110 DDGSLV-SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKV-------- 154 DG LV + +G+ VL+ P+QI K+E F V KG I+ G+ Sbjct: 121 KDGYLVLNQAGR--VLNKEGQPVQI--KNENFTVDSKGHITAAITNQSDGEESGSQEVTI 176 Query: 155 --IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 T+ + QG + E++G+ + TV+ LE SN + + +M Sbjct: 177 EDYGTLKVVDFPD-QGQLHAEDNGLFSTAQAETTPADT--TVQWKMLEKSNVDMVEQMTA 233 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M+ + S + ++ M +++ ++ Sbjct: 234 MMSSQRALQSAAQSLKMYDQIMSKSVSDVG 263 >gi|300716219|ref|YP_003741022.1| flagellar basal-body rod protein [Erwinia billingiae Eb661] gi|299062055|emb|CAX59171.1| Flagellar basal-body rod protein [Erwinia billingiae Eb661] Length = 251 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 24/256 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLEQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + GS T LD A+ D W ++ +P G TR+G ++ G L + G Sbjct: 59 ASTPGADTSQGSLDYTERPLDVAVREDGWLSVRAPDGTEAYTRNGNMELNPAGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + D PI +PQ E + G I+ + + L S+ V Sbjct: 118 NLVMGD--GGPIAVPQGSE-VTIAADGSITALNPGDPPNATVQLGRLKLVKAVGSE--VT 172 Query: 172 RENSGISPNIPPTPLEDLS------GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ + + + V G LE SN + M MI ++F Sbjct: 173 RGDDGLFRLTATAQAQRGAVLQTDPTIQVMPGVLEGSNVKPVETMVDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEAIRNI 241 +I +++ + + Sbjct: 233 VISSVDEN-EQRANQL 247 >gi|296282278|ref|ZP_06860276.1| flagellar basal-body rod protein FlgF [Citromicrobium bathyomarinum JL354] Length = 246 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 16/239 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A R +A NM+NTDT+GFR ++ + I+ ++ S Sbjct: 1 MDRLIYTALSGMQASMDRQRAIASNMANTDTLGFRAELIEQRAM--TIEGHPNEARSMQV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G I TG +LD A+ + A+++ G TR G ++ G LV+ G Sbjct: 59 ARVTGADMTGGEVIETGRDLDLAIATKSLMAVQADDGTEAYTRRGDLSISATGLLVTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 +PVL PI +P ++ E G ++ + + L S + S + Sbjct: 119 -HPVLGDTG-PITVPPGGR-ISISEDGTVTRSDPDAPEAPPAEVGRIKLASWEGSP--IA 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + G+ L V G LE SN + MI + F + L+ Sbjct: 174 KGLDGLFRVEGGGILPLDEEARVHSGALEQSNVKPTEVLVAMIEEQRLFAMRSKLVSTA 232 >gi|224825778|ref|ZP_03698882.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002] gi|224602002|gb|EEG08181.1| flagellar basal-body rod protein FlgF [Lutiella nitroferrum 2002] Length = 241 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 99/247 (40%), Gaps = 15/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + A+N++N T GFR S A++ Sbjct: 1 MDALIYTIMSGADRTLKAQQVHANNLANAQTNGFRADIEVASS--QAVRGYGYDARHMTR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G+ + TG +LD AL+GD + A+ G TR G F V +G+L + +G+ Sbjct: 59 AEPNAVDHRAGTVVETGRDLDVALQGDGFLAVAVGSGEAYTRAGNFSVDANGAL-TVNGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PVL PI +P V G IS + +V+ + L + + ++ Sbjct: 118 -PVLGDGG-PIVLPPYVR-VAVAGDGTISIQPPGETAMQVVDRLKLVKPAPEE--LSKDE 172 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 +G+ + L V V+ LE SN +++ EM + L + F + + M Sbjct: 173 NGLIVSRLGNTLPADETVRVQGEHLEQSNVSAVEEMIATMSLNRGFEMQMKMFNAAND-M 231 Query: 235 LEAIRNI 241 +EA + Sbjct: 232 VEAGNRL 238 >gi|256020229|ref|ZP_05434094.1| flagellar basal body rod protein FlgF [Shigella sp. D9] gi|260853467|ref|YP_003227358.1| putative lateral flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|260866414|ref|YP_003232816.1| putative lateral flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|332281391|ref|ZP_08393804.1| lateral flagellar rod protein [Shigella sp. D9] gi|257752116|dbj|BAI23618.1| predicted lateral flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|257762770|dbj|BAI34265.1| predicted lateral flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|323158102|gb|EFZ44201.1| flagellar basal-body rod protein FlgF [Escherichia coli EPECa14] gi|323178493|gb|EFZ64071.1| flagellar basal-body rod protein FlgF [Escherichia coli 1180] gi|323181548|gb|EFZ66968.1| flagellar basal-body rod protein FlgF [Escherichia coli 1357] gi|332103743|gb|EGJ07089.1| lateral flagellar rod protein [Shigella sp. D9] Length = 245 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLEKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 AEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|126176155|ref|YP_001052304.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS155] gi|125999360|gb|ABN63435.1| flagellar basal-body rod protein FlgF [Shewanella baltica OS155] Length = 244 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 13/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ + + + + S A+N++N +T GF+ + + V + + Sbjct: 1 MEKMLYTAASGAVRILEAQSIRANNLANAETAGFKADLERVNAVPLVAQGNSLNTRVMAQ 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S++ G TG LD A+ F++ TR G + +G L + G+ Sbjct: 61 TESSGFSQQSGVINPTGRSLDLAIRDRGLFSVAVDGAEAYTRSGAIETNAEGQL-TIDGR 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PVL + PI +P+ ++F VGE G +S + + + L + D +++ Sbjct: 120 -PVLGIDG-PIALPEYKDVF-VGEDGTVSVLPAEGGIIEEVGRLKLVNPDF--ALMQKGQ 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + GV V GFLE SN ++ E+ + L+++F L+ EK + Sbjct: 175 DGLLYRRDGQAVPQDEGVLVDSGFLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEK-L 233 Query: 235 LEAIRNI 241 EA + Sbjct: 234 AEAGNRL 240 >gi|32477363|ref|NP_870357.1| FlgF [Rhodopirellula baltica SH 1] gi|32447914|emb|CAD77434.1| FlgF [Rhodopirellula baltica SH 1] gi|327537336|gb|EGF24069.1| Flagellar basal-body rod FlgF [Rhodopirellula baltica WH47] Length = 273 Score = 171 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 103/251 (41%), Gaps = 14/251 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK----VKFSE-----VVGAIKND 51 M + A A RL ++ N++N DT GF+ + +FSE +V Sbjct: 24 MPYGVYLSAAGAQAQNHRLQQISHNLANVDTPGFKPSQTILQARFSELIEEGMVPPGLGG 83 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTD 110 D V E VG+ +TG E DFAL + ++F L+ +LTR G F Sbjct: 84 ADDIGGGVTIQPEQTQFGVGAIRTTGRETDFALHDKKSFFVLQRGDEQLLTRAGDFMFDS 143 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G++V++ G PVL PIQI + F VG +G I+Q G+ + L Sbjct: 144 TGTMVNSGGD-PVLGKGGRPIQIDPR-RPFTVGSEGTITQAGET-QQLMLAQPASYGDLA 200 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + P + + D S V G LE S + M +MI ++ + + +I Sbjct: 201 NVGGNLFRPLAEFSLVPD-SDRNVVAGSLEQSAVSPTGTMMEMIETSRAYEANIQMIKNQ 259 Query: 231 EKSMLEAIRNI 241 + + I + Sbjct: 260 DSVLGSLIGRV 270 >gi|126697826|ref|YP_001086723.1| flagellar hook protein [Clostridium difficile 630] gi|115249263|emb|CAJ67076.1| Flagellar hook protein FlgE (Distal rod protein) [Clostridium difficile] Length = 327 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 48/324 (14%), Positives = 97/324 (29%), Gaps = 85/324 (26%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M + G++ A + +L + +N++N T F+ + ++ Sbjct: 1 MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ Q G+ T D ++GD + + ++ TRDG F + Sbjct: 61 GTNLGQVGVGSKISSINKDMVQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120 Query: 109 T-------------DDGSLVSASGKYPVL-------------------DMASVPIQIP-- 134 G LV+ G PI IP Sbjct: 121 DTGFKAADGALKNIKGGRLVNGDGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIPLQ 180 Query: 135 ---------QKDEIFNVGEKGEIS---QKGK--------------------------VIA 156 Q +N+ + G + G+ I Sbjct: 181 SISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQ 240 Query: 157 TMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + +Y+ G + P+ P + T+ +G +E SN + E +MI Sbjct: 241 KVQIYAFQNPAGLDAAGGNLFKPSANSGDPQIAGATGTIIQGAIEASNVDIAEEFTEMII 300 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 ++ F + + +I +++ + E I Sbjct: 301 ASRSFQANSKIISTSDEILQEIIN 324 >gi|157959901|ref|YP_001499935.1| flagellar basal-body rod protein FlgF [Shewanella pealeana ATCC 700345] gi|157844901|gb|ABV85400.1| flagellar basal-body rod protein FlgF [Shewanella pealeana ATCC 700345] Length = 241 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 9/241 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 + + + + A+N++N DT GF+ + + V A D Q + Sbjct: 2 LYTAASGASRVMEAQAIRANNLANADTTGFKADLERVNAKVIAPIGDSLQTRVLAQTQGS 61 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL 124 S++ G+ TG LD A+ F++ + G TR G G L + G+ PV Sbjct: 62 GFSRQSGTLNPTGRTLDLAINNAGLFSVMTAEGEGYTRAGAMTADATGQL-TLDGR-PVA 119 Query: 125 DMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +A PI +P+ E+F +G+ G I+ G + L V+ + + G+ Sbjct: 120 GLAG-PIVLPEYRELF-IGDDGRINIIADADGVIEEVGQLKLVNPDIALMSKGLDGLLYP 177 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 PL VTV GFLE SN ++ E+ + L+++F L+ EK + EA Sbjct: 178 QDRQPLPASEEVTVSSGFLEASNVQAVGELIAAMDLSRQFEVQVKLMKSAEK-LAEAGNR 236 Query: 241 I 241 + Sbjct: 237 L 237 >gi|227328339|ref|ZP_03832363.1| flagellar basal body rod protein FlgF [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 251 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGGASQSLEKQAITANNLANASTPGFRAQLSALRAV--PVNGLTLPTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 + G TG +D AL ++W A+++ G TR+G ++ DG L + G Sbjct: 59 ASTPGADMTEGVMNYTGRAMDVALPKESWLAVQTANGGEAYTRNGNMEINADGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 + V+ PI IP + + ++ G IS IA +G L V + V R Sbjct: 118 R--VVMGDGGPIDIPPQAQ-ISISPDGTISALNAGDPPNTIAQLGRLKLVKATGQEVERS 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L++ V + G +E SN N++ M MI ++F +I Sbjct: 175 DDGLFRLTQQAQQQRGNVLQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 + + A + +A Sbjct: 235 SSVDDNAQRANQILA 249 >gi|296282279|ref|ZP_06860277.1| hypothetical protein CbatJ_01595 [Citromicrobium bathyomarinum JL354] Length = 269 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 33/267 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L + L T+A N++N++T GF+ + +F+E+V + I + S Sbjct: 2 SFYTSLNGLKNAQSSLGTIAHNIANSETYGFKRGRTEFAEIVAGSALSNPRTIQGIGSSV 61 Query: 64 EYL--SKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGK 120 E + + +G TG+ LD A+ GD +F + G + TR G F + + G +V G Sbjct: 62 EAITQNFSLGPIEQTGSALDMAITGDGFFTMRGENGGTLYTRAGSFTINESGGIVDNDGN 121 Query: 121 ----YPVLDMASVP-------IQIPQKDEI------FNVGEKGEISQ-----KGKVIATM 158 Y V D P +QIP + VG G I + + + Sbjct: 122 RLQAYAV-DANGDPTSNALQDVQIPVTNAAGAEYAGVTVGSDGVIRASYADGSNQPVGMV 180 Query: 159 GLYSVDMSQGFVRRENSG------ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 L + G +S P G + G LE SN + E+ Sbjct: 181 ALATFMAPNGLKPVGSSNWESTGFSGAASYGEPGNGQYGA-LLSGSLERSNVDIAEELVG 239 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 +I + F + ID + + Sbjct: 240 LITAQRNFQANAKAIDTATQISQTVMN 266 >gi|306813302|ref|ZP_07447495.1| flagellar basal body rod protein FlgF [Escherichia coli NC101] gi|305854065|gb|EFM54504.1| flagellar basal body rod protein FlgF [Escherichia coli NC101] Length = 245 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGVSGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|109947349|ref|YP_664577.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis str. Sheeba] gi|109714570|emb|CAJ99578.1| flagellar basal-body rod protein FlgG [Helicobacter acinonychis str. Sheeba] Length = 269 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 30/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL V++N++N +T GF+ F + + + K Sbjct: 1 MQNGYYAAAGAMATQFNRLDLVSNNLANLNTNGFKRDDTITSDFLRLYQQYQEQLPLKDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y K +G+F T LDFAL + +FA+++ GI TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDKSLGAFEETHNPLDFALTSPNLYFAIQTNEGIAYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGK----V 154 DG F + DG LV+ +G + L+ + +P + V + G I+ Sbjct: 121 DGHFSIDKDGFLVTLNGFKVLSRSGLNEQGGIMLMP--NTEIEVDQNGGITFSDNEAQIQ 178 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + L S + + + + S +++ LE SN N++ EM +I Sbjct: 179 AGALALVSFSEPKNLKKIGQNLYTYQGEGIHQVSDSNA-LRQYMLEKSNVNAVREMSALI 237 Query: 215 HLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + + + + ++ ++ M EAI +A+ Sbjct: 238 EINRFLDMYSKVLKTHQDDMNAEAINKLAT 267 >gi|239628978|ref|ZP_04672009.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519124|gb|EEQ58990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 246 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 14/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDIDQKIS 57 M + F + L ++ L A+N++N T G++ + F+E + N Q + Sbjct: 1 MFSGFYTAASGMLMNQRSLDMAANNIANVKTSGYKPKRLVKTTFNEQLVRQMNGQTQGLG 60 Query: 58 FVAS----GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 ++ +E + + TG D A+ GD +F ++ G LTR+G FK ++G+ Sbjct: 61 QGSTISIGTREMTTHGQAPVVDTGQTYDLAINGDGFFVIQGTDGQYLTRNGHFKRDEEGN 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDMSQGFVRR 172 L+ G V+ P+ + + F VG G I + + + D Sbjct: 121 LILP-GVGQVMGDGG-PVYVDESG--FRVGADGIIYDNEDGELDQIQIVEPDDYDNLTFY 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 +N T + TV +G LE S N EM + + + + F S + ++ Sbjct: 177 DNGTYGAGGGVTLTQVYP--TVYQGKLEQSGVNLNNEMTRAMEVQRAFQSCGKALTIIDQ 234 Query: 233 SMLEAIRNIA 242 + I Sbjct: 235 MNQKTANEIG 244 >gi|293408368|ref|ZP_06652207.1| conserved hypothetical protein [Escherichia coli B354] gi|291471546|gb|EFF14029.1| conserved hypothetical protein [Escherichia coli B354] Length = 245 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 GEGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|309779448|ref|ZP_07674209.1| flagellar basal-body rod protein FlgF [Ralstonia sp. 5_7_47FAA] gi|308921689|gb|EFP67325.1| flagellar basal-body rod protein FlgF [Ralstonia sp. 5_7_47FAA] Length = 245 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 15/245 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + + L + + A+N++N T GF+ F V ++ + S+V Sbjct: 1 MDRSIYVSMTGVKHLFDQQAASANNLANASTTGFKAQIDAFHTV--GVQGEGSPTRSYVM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G +TG LD A++G +FA+++P G TR G F++ DG++ + SG Sbjct: 59 ASAIGTDLAPGPIETTGRSLDVAIDGQGFFAVQTPDGGEAYTRAGTFQLGPDGTIQTLSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-------KGKVIATMGLYSVDMSQGFVRR 172 + PVL PI +P + G ++ + + L S+D + + R Sbjct: 119 Q-PVLGDGG-PITLPPN-TTVQFAKDGTVNAISADSRTPPVSLGRLKLVSIDPAN--IDR 173 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ V + G LE SN N + MI ++++ + ++ Sbjct: 174 GADGLFRQRDGQDAGVDEKVRITGGALEGSNVNLTDSLVNMIEISRQLEMQMKSLHTSDT 233 Query: 233 SMLEA 237 + A Sbjct: 234 NAQSA 238 >gi|315125985|ref|YP_004067988.1| FlgFL [Pseudoalteromonas sp. SM9913] gi|315014499|gb|ADT67837.1| FlgFL [Pseudoalteromonas sp. SM9913] Length = 243 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 10/236 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ ++ L A+N++N TVGF+ + ++ ++ + + Sbjct: 1 MEKLIYTAVSGAELNNTALRVAANNLANVSTVGFKADLEQAQSMM--VQGEGFRTRYHAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G + TG LD AL + + G TR G V DG V+ +G Sbjct: 59 LTPVTTDLSSGPIMDTGRNLDIALSNGGYLEVMDDNGEPAYTRAGNLVVDADGF-VTVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSVDMSQGFVRRENSG 176 + D IQ+P+ +G G I+ G VIA + + + + G Sbjct: 118 RRVQGDGGD--IQLPEF-GDIEIGSNGMINLTPIGGGVIAEDAQIKLASTDANLIKGADG 174 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + PLE +TV+ G LE SN N++ EM + ++++++F ++ ++ Sbjct: 175 LLRANDLQPLEADETITVRTGALEGSNVNAVAEMIKTMNISRQFEMNVKMMKSADE 230 >gi|331671805|ref|ZP_08372601.1| putative flagella basal body rod protein [Escherichia coli TA280] gi|59889781|emb|CAH19137.1| Lateral flagellar rod protein (FlgF-like) [Escherichia coli] gi|284920045|emb|CBG33102.1| lateral flagellar rod protein (FlgF-like) [Escherichia coli 042] gi|331070794|gb|EGI42153.1| putative flagella basal body rod protein [Escherichia coli TA280] Length = 245 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G LV G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLV-IDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|170021359|ref|YP_001726313.1| flagellar basal body rod protein FlgF [Escherichia coli ATCC 8739] gi|169756287|gb|ACA78986.1| flagellar basal-body rod protein FlgF [Escherichia coli ATCC 8739] Length = 245 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|188495566|ref|ZP_03002836.1| flagellar basal-body rod protein FlgF [Escherichia coli 53638] gi|188490765|gb|EDU65868.1| flagellar basal-body rod protein FlgF [Escherichia coli 53638] Length = 245 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGSGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|304397205|ref|ZP_07379084.1| flagellar basal-body rod protein FlgF [Pantoea sp. aB] gi|304355354|gb|EFM19722.1| flagellar basal-body rod protein FlgF [Pantoea sp. aB] Length = 251 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 91/251 (36%), Gaps = 21/251 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + VA Sbjct: 1 MDHAIYTAMGAASQTLDQQAVTASNLANASTPGFRAQLNALRAV--PVSGWSLPTRTLVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T LD A++ D W A+ + G TR+G +++ G+L + G Sbjct: 59 ASTPGADMSQGAMDYTERPLDVAVQQDGWLAVRTADGSEAYTRNGNMQISPTGTL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ PI IPQ E + G I+ + + L Q R Sbjct: 118 N-PVMGDGG-PIVIPQGTE-ITIAADGSITGLNAGDSPNATVQLGKLKLVRAT-GQELQR 173 Query: 172 RENSGISPNIP-----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++ P L+ + V G LE SN + M MI ++F + Sbjct: 174 SDDGMFRPTASTQATRGAALQADPTMQVMPGVLEGSNVKPVETMVDMIANARRFEMQMKV 233 Query: 227 IDENEKSMLEA 237 I +++ +A Sbjct: 234 ITNVDENEQKA 244 >gi|218703526|ref|YP_002411045.1| flagellar basal body rod protein FlgF [Escherichia coli UMN026] gi|293403356|ref|ZP_06647447.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298378967|ref|ZP_06988848.1| flagellar basal-body rod protein FlgF [Escherichia coli FVEC1302] gi|300900358|ref|ZP_07118534.1| flagellar basal body rod protein FlgF [Escherichia coli MS 198-1] gi|300936127|ref|ZP_07151066.1| flagellar basal body rod protein FlgF [Escherichia coli MS 21-1] gi|218430623|emb|CAR11489.1| Lateral flagellar rod protein (FlgF-like) [Escherichia coli UMN026] gi|291429209|gb|EFF02229.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280080|gb|EFI21584.1| flagellar basal-body rod protein FlgF [Escherichia coli FVEC1302] gi|300356126|gb|EFJ71996.1| flagellar basal body rod protein FlgF [Escherichia coli MS 198-1] gi|300458705|gb|EFK22198.1| flagellar basal body rod protein FlgF [Escherichia coli MS 21-1] gi|323171065|gb|EFZ56714.1| flagellar basal-body rod protein FlgF [Escherichia coli LT-68] gi|323191539|gb|EFZ76800.1| flagellar basal-body rod protein FlgF [Escherichia coli RN587/1] Length = 245 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|227112522|ref|ZP_03826178.1| flagellar basal body rod protein FlgF [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 251 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGGASQSLEKQAITANNLANASTPGFRAQLSALRAV--PVNGLTLPTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG +D AL ++W A+++ G TR+G ++ DG L + G Sbjct: 59 ASTPGADMTEGVMNYTGRAMDVALPKESWLAVQAADGGEAYTRNGNMEINADGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 + V+ PI +P + + ++ G IS IA +G L V + V R Sbjct: 118 R--VVMGDGGPIDVPPQAQ-ISISPDGTISALNAGDPPNTIAQLGRLKLVKATGQEVERS 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L++ V + G +E SN N++ M MI ++F +I Sbjct: 175 DDGLFRLTQQAQQQRGNVLQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKII 234 Query: 228 DENEKSMLEAIRNIA 242 + + A + +A Sbjct: 235 SSVDDNAQRANQILA 249 >gi|182418329|ref|ZP_02949624.1| flagellar hook protein FlgE [Clostridium butyricum 5521] gi|237666973|ref|ZP_04526958.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377711|gb|EDT75255.1| flagellar hook protein FlgE [Clostridium butyricum 5521] gi|237658172|gb|EEP55727.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 255 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 112/247 (45%), Gaps = 16/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M F G + A ++++ +++++ N+ T G++ + F +++ + I Sbjct: 1 MFNVFATGKSGMTAYQEKMDYLSNDLVNSTTTGYKGTDIGFKDLMTESLDRKGNPIVNKN 60 Query: 57 ----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDD 111 + V G Y + + G+ ++TG + D A++G +FAL+ P G I TRDG FK+ + Sbjct: 61 AVNGTGVRIGTNYANNKQGNLLNTGLKTDLAIDGKGYFALQDPDGTISYTRDGNFKIDSN 120 Query: 112 GSLVSASG--KYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDM 165 GSLV+ASG Y + + + +G IS ++ ++ +++ Sbjct: 121 GSLVTASGVKVYVQYEPGFSEGDPAFDSDNIAIDGQGGISMNIDGNVALVGSIPVFTAIG 180 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 +GFV + N+ P+ + +++GFLE SN ++ +I + F + Sbjct: 181 DKGFVPKGNNMFVPSDDAQ-ITLSDDYDIRQGFLEASNVDAAEVFSDVILTQRAFQLSSK 239 Query: 226 LIDENEK 232 I + Sbjct: 240 AITTADD 246 >gi|292492364|ref|YP_003527803.1| flagellar basal-body rod protein FlgF [Nitrosococcus halophilus Nc4] gi|291580959|gb|ADE15416.1| flagellar basal-body rod protein FlgF [Nitrosococcus halophilus Nc4] Length = 246 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 12/208 (5%) Query: 32 VGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFA 91 GFR +F + + + + + + + +G+ STG ELD A++G+ A Sbjct: 32 TGFRADLSQFRSM--PVFGEGYPTRVYAMAERPGVDFTLGALQSTGRELDVAVQGEGLIA 89 Query: 92 LESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 +++ G TR G K++ +G L + +G+ PVL P+ +P E +G G IS Sbjct: 90 VQAFDGTEAYTRAGNLKISSNGILTTGAGQ-PVLGEGG-PVAVPP-AETVEIGTDGTISI 146 Query: 151 K--GKVIATM----GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 + G+ T+ + V+ +++ G+ + V++ G LE SN Sbjct: 147 RPLGQEANTLAVLDRIKLVNPPLAQLKKGEDGLLRLAEGAVAPAEASVSLASGMLEASNV 206 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEK 232 N + M +MI L +++ ++ E Sbjct: 207 NGVDAMVEMIALARQYEMQVKMMQAAED 234 >gi|261821154|ref|YP_003259260.1| flagellar basal body rod protein FlgF [Pectobacterium wasabiae WPP163] gi|261605167|gb|ACX87653.1| flagellar basal-body rod protein FlgF [Pectobacterium wasabiae WPP163] Length = 251 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 101/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGGASQSLEKQAITANNLANASTPGFRAQLSALRAV--PVNGLTLPTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 + G TG +D AL ++W A+++ G TR+G +++ DG L + G Sbjct: 59 ASTPGADMTEGVMNYTGRAMDVALPKESWLAVQTANGGEAYTRNGNMEISADGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 + V+ PI IP + + ++ G IS IA +G L V + V R Sbjct: 118 R--VVMGDGGPIDIPPQAQ-ISISPDGTISALNAGDPPNTIAQLGRLKLVKATGQEVERS 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L++ V + G +E SN N++ M MI ++F +I Sbjct: 175 DDGLFRLTQQAQQQRGNVLQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 + + A + +A Sbjct: 235 SSVDDNAQRANQILA 249 >gi|254973919|ref|ZP_05270391.1| flagellar hook protein [Clostridium difficile QCD-66c26] gi|255091306|ref|ZP_05320784.1| flagellar hook protein [Clostridium difficile CIP 107932] gi|255312963|ref|ZP_05354546.1| flagellar hook protein [Clostridium difficile QCD-76w55] gi|255515722|ref|ZP_05383398.1| flagellar hook protein [Clostridium difficile QCD-97b34] gi|255648816|ref|ZP_05395718.1| flagellar hook protein [Clostridium difficile QCD-37x79] gi|260682035|ref|YP_003213320.1| flagellar hook protein [Clostridium difficile CD196] gi|260685633|ref|YP_003216766.1| flagellar hook protein [Clostridium difficile R20291] gi|306518931|ref|ZP_07405278.1| flagellar hook protein [Clostridium difficile QCD-32g58] gi|260208198|emb|CBA60542.1| flagellar hook protein [Clostridium difficile CD196] gi|260211649|emb|CBE01907.1| flagellar hook protein [Clostridium difficile R20291] Length = 327 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 47/324 (14%), Positives = 95/324 (29%), Gaps = 85/324 (26%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M + G++ A + +L + +N++N T F+ + ++ Sbjct: 1 MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ Q G+ T D ++GD + + ++ TRDG F + Sbjct: 61 GTNLGQVGVGSKISSINKDMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120 Query: 109 T-------------DDGSLVSASGKYPVL-------------------DMASVPIQIP-- 134 G LV+ G PI IP Sbjct: 121 DTGFKAADGALKNIKGGRLVNGDGYMLQGVIYDGEYKADTGEFIKKGDAKGKEPIVIPLQ 180 Query: 135 ---------QKDEIFNVGEKGEIS---QKGK--------------------------VIA 156 Q +N+ + G + G+ I Sbjct: 181 SISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQ 240 Query: 157 TMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + Y+ G + P+ P + + +G +E SN + E +MI Sbjct: 241 KVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGNIIQGAIEASNVDIAEEFTEMII 300 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 ++ F + + +I +++ + E I Sbjct: 301 ASRSFQANSKIISTSDEILQEIIN 324 >gi|50120640|ref|YP_049807.1| flagellar basal body rod protein FlgF [Pectobacterium atrosepticum SCRI1043] gi|49611166|emb|CAG74612.1| flagellar basal-body rod protein [Pectobacterium atrosepticum SCRI1043] Length = 251 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGGASQSLEKQAITANNLANASTPGFRAQLSALRAV--PVNGLTLPTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 + G TG +D AL ++W A+++ G TR+G ++ DG L + G Sbjct: 59 ASTPGADMTEGVMNYTGRAMDVALPKESWLAVQTANGGEAYTRNGNMEINADGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 + V+ PI IP + + ++ G IS IA +G L V + V R Sbjct: 118 R--VVMGDGGPIDIPPQAQ-ISISADGTISALNAGDPPNTIAQLGRLKLVKATGQEVERS 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L++ V + G +E SN N++ M MI ++F +I Sbjct: 175 DDGLFRLTQQAQQQRGNVLQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 + + A + +A Sbjct: 235 SSVDDNAQRANQILA 249 >gi|261344141|ref|ZP_05971785.1| flagellar basal-body rod protein FlgF [Providencia rustigianii DSM 4541] gi|282567733|gb|EFB73268.1| flagellar basal-body rod protein FlgF [Providencia rustigianii DSM 4541] Length = 251 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 88/250 (35%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + V++N++N T GF+ V I D +Q + V Sbjct: 1 MDHVIYTAMGGARHALENQGIVSNNIANVSTAGFKAQLSAMRAV--PIHGDSEQTRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G TG D AL + A+ G TR+G +V+ DG L+ Sbjct: 59 ASTPGADMSQGPLNYTGKATDVALNDKHFLAVALADGSEAYTRNGNIQVSPDGELMIGG- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG-LYSVDMSQGFVRRE 173 +L PI +P +G G I+ ++ +G L V+ + R Sbjct: 118 --NLLQGDGGPIDVPPNA-DLTIGADGTITALLATDPPTMLGQIGRLKVVEAQPNELIRG 174 Query: 174 NSGISPNIPPTPLEDLSGVT------VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G+ + +G+ V G +E SN N+ M MI + F +I Sbjct: 175 EDGLFHLSAQAQAANGNGLQQSGRAIVTSGVIEGSNVNAAEAMVSMIANARHFEMQMKVI 234 Query: 228 DENEKSMLEA 237 +++ A Sbjct: 235 HSADENAQRA 244 >gi|304412507|ref|ZP_07394113.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|307307166|ref|ZP_07586904.1| fagellar hook-basal body protein [Shewanella baltica BA175] gi|304349149|gb|EFM13561.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|306910405|gb|EFN40836.1| fagellar hook-basal body protein [Shewanella baltica BA175] Length = 244 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 13/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ + + + + S A+N++N +T GF+ + + V + + Sbjct: 1 MEKMLYTAASGAVRILEAQSIRANNLANAETAGFKADLERVNAVPLVAQGNSLNTRVMAQ 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S++ G TG LD A+ F++ TR G + +G L + G+ Sbjct: 61 TESSGFSQQSGVINPTGRSLDLAIRDRGLFSVAVDGAEAYTRSGAIETNVEGQL-TIDGR 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 PVL + PI +P+ ++F VGE G +S + + + L + D +++ Sbjct: 120 -PVLGIDG-PIALPEYKDVF-VGEDGTVSVLPAEGGIIEEVGRLKLVNPDF--ALMQKGQ 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + GV V GFLE SN ++ E+ + L+++F L+ EK + Sbjct: 175 DGLLYRRDGQAVPQDEGVLVDSGFLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEK-L 233 Query: 235 LEAIRNI 241 EA + Sbjct: 234 AEAGNRL 240 >gi|52082162|ref|YP_080953.1| flagellar basal-body rod protein [Bacillus licheniformis ATCC 14580] gi|52787554|ref|YP_093383.1| FlhO [Bacillus licheniformis ATCC 14580] gi|319648039|ref|ZP_08002256.1| FlhO protein [Bacillus sp. BT1B_CT2] gi|52005373|gb|AAU25315.1| flagellar basal-body rod protein [Bacillus licheniformis ATCC 14580] gi|52350056|gb|AAU42690.1| FlhO [Bacillus licheniformis ATCC 14580] gi|317389674|gb|EFV70484.1| FlhO protein [Bacillus sp. BT1B_CT2] Length = 279 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 103/280 (36%), Gaps = 42/280 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV------------ 45 M +A + ++R + +N++N +T G++ + F E++ Sbjct: 1 MLKGLYTATSAMITQQRRTEMLTNNIANANTPGYKEDQGSIRSFPEMLLSRIESDSFKAG 60 Query: 46 -----GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------EGDA----- 88 + + I + V + G ST D A+ G+ Sbjct: 61 SASRSFSTQTPIGSINTGVYMQELKPQFSQGDLQSTNEPTDIAISEAEVPVNGETNDKAA 120 Query: 89 -WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 ++A+ G + +R RF + ++ L + +G+ VL + PI + E F V E G Sbjct: 121 LFYAVRLENGDVRYSRSSRFSLNENNQL-TINGRL-VLSTENRPITV--GSENFQVAEDG 176 Query: 147 EISQKGKVIATMGLYSVDMSQGFVRRENSGI----SPNIPPTPLEDLSGVTVKRGFLEDS 202 +++ G+ + + + ++ R + +P +VK+G E S Sbjct: 177 TVTENGQNLGRIDVRIALDTRNLAREGDDLYRTENGEALPSAVGNPEVTYSVKQGMTERS 236 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + +M + F + ++ +KSM +A I Sbjct: 237 NVDVTRAYTEMTAAYRSFEANQKVLQAYDKSMEKAANEIG 276 >gi|253688971|ref|YP_003018161.1| flagellar basal-body rod protein FlgF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755549|gb|ACT13625.1| flagellar basal-body rod protein FlgF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 251 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 19/255 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + A+N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGGASQSLEKQAITANNLANASTPGFRAQLSALRAV--PVNGLTLPTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 + G TG +D AL ++W A+++ G TR+G ++ DG L + G Sbjct: 59 ASTPGADMTEGVMNYTGRAMDVALPKESWLAVQTANGGEAYTRNGNMEINADGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 + V+ PI +P + + ++ G IS IA +G L V + V R Sbjct: 118 R--VVMGDGGPIDVPPQAQ-ISISADGTISALNPGDPPNTIAQLGRLKLVKATGQEVERS 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L++ V + G +E SN N++ M MI ++F +I Sbjct: 175 DDGLFRLTQQAQQQRGNVLQNDPTVRIMPGVIEGSNVNTVDTMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEAIRNIA 242 + + A + +A Sbjct: 235 SSVDDNAQRANQILA 249 >gi|88704305|ref|ZP_01102019.1| flagellar basal-body rod protein FlgF [Congregibacter litoralis KT71] gi|88701356|gb|EAQ98461.1| flagellar basal-body rod protein FlgF [Congregibacter litoralis KT71] Length = 251 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%) Query: 30 DTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAW 89 TVGF+ V+ V ++ + ++ E G TG +LD A+ G+ W Sbjct: 30 STVGFKADLVEAETVY--LRGAGQETRAYNVIQGTGTDFEQGVIEQTGRDLDLAINGEGW 87 Query: 90 FALES-----PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGE 144 FA+++ G +TR G F++ + G LV+ +G+ + + PI +P ++G Sbjct: 88 FAVQALTGEGNGGEGVTRRGDFRIDEFGQLVNGAGQALLGNDG--PIALPPF-SSLSIGS 144 Query: 145 KGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 G +S V+ + + + + + G P V + Sbjct: 145 DGTVSIVPLGELPNAVAVLDRIKMVNPASED--LSKGEDGFFRTDSDLPTPADGNVRLVS 202 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G LE SN N + M +MI L+++F L+ E Sbjct: 203 GALESSNVNPVTAMVRMIELSRQFEHYVKLMKTAED 238 >gi|331645419|ref|ZP_08346523.1| putative flagella basal body rod protein [Escherichia coli M605] gi|323975929|gb|EGB71023.1| fagellar hook-basal body protein [Escherichia coli TW10509] gi|331045581|gb|EGI17707.1| putative flagella basal body rod protein [Escherichia coli M605] Length = 245 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLVTSDGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|255099422|ref|ZP_05328399.1| flagellar hook protein [Clostridium difficile QCD-63q42] Length = 327 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 48/324 (14%), Positives = 96/324 (29%), Gaps = 85/324 (26%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M + G++ A + +L + +N++N T F+ + ++ Sbjct: 1 MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ Q G+ T D ++GD + + ++ TRDG F + Sbjct: 61 GTNLGQVGVGSKISSINKDMVQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120 Query: 109 T-------------DDGSLVSASGKYPVL-------------------DMASVPIQIP-- 134 G LV+ G PI IP Sbjct: 121 DTGFKAADGALKNIKGGRLVNGDGYMLQGMIYDGEYKADTGEFVKKGDAKGKEPIVIPLQ 180 Query: 135 ---------QKDEIFNVGEKGEIS---QKGK--------------------------VIA 156 Q +N+ + G + G+ I Sbjct: 181 SISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYDIPDGAKVGDTPAGIDKLKGTIQ 240 Query: 157 TMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + Y+ G + P+ P + T+ +G +E SN + E +MI Sbjct: 241 KVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGTIIQGAIEASNVDIAEEFTEMII 300 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 ++ F + + +I +++ + E I Sbjct: 301 ASRSFQANSKIISTSDEILQEIIN 324 >gi|227873524|ref|ZP_03991769.1| flagellar basal-body rod protein [Oribacterium sinus F0268] gi|227840614|gb|EEJ50999.1| flagellar basal-body rod protein [Oribacterium sinus F0268] Length = 256 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 100/259 (38%), Gaps = 22/259 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVG--------AIK 49 M F + + + L+ +++NM N T G++ + F E + Sbjct: 1 MYQGFYDLASGMITQRRNLNNISNNMVNIQTSGYKKDTMVSSTFKEEMMIRTGKYNKKGP 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 D+ ++ K Y E GS+ T D A+ G +FA+ +P+G TR G F V Sbjct: 61 EDLAVASRIKSASKTYTDYEQGSYELTDGIYDTAISGKGFFAVSTPQGTRYTRGGAFSVN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSV 163 ++G L A G V I +P + F + G I V T+ + Sbjct: 121 ENGVLELA-GVGKVQSEEGHDIVLPNDN--FAIDPDGSIFDPNSTGNTRTVYGTLKVVDF 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + +N+ S N T L+ + ++ LE SN N + EM M+ + S Sbjct: 178 ADYNALHKEDNNLFSTNQ--TELKKPADSSINWKMLEKSNVNMVDEMTTMMSSQRALQSA 235 Query: 224 TTLIDENEKSMLEAIRNIA 242 ++ + M +A ++ Sbjct: 236 AQMLRMYDTVMAKASSDVG 254 >gi|160939652|ref|ZP_02087000.1| hypothetical protein CLOBOL_04544 [Clostridium bolteae ATCC BAA-613] gi|158437443|gb|EDP15207.1| hypothetical protein CLOBOL_04544 [Clostridium bolteae ATCC BAA-613] Length = 246 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 14/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKND----ID 53 M + F + L ++ L+ A+N++N T G++ + F + + N + Sbjct: 1 MFSGFYTAASGMLMNQRSLNMAANNIANVKTSGYKPKRLVKTTFDQQLVREMNGRTEGLG 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 Q + +E + G TG D A+ GD +F ++ G LTR+G F D+G+ Sbjct: 61 QGSTISVGTREMTTHGQGPIEDTGKTYDLAINGDGFFVIQGENGQYLTRNGHFTRDDEGN 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDMSQGFVRR 172 L+ G ++ P+ + ++ F VG G I + + + D Sbjct: 121 LMLP-GVGQLMGDGG-PVYVDEEG--FRVGADGIIYDNEDGALDQIQIVVPDNYDSLEFY 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 +N + TV +G LE S N EM + + + + F S + ++ Sbjct: 177 DNGTYGAGAGVELSQVYP--TVYQGKLEQSGVNLNNEMTRAMEVQRAFQSCGKALTIIDQ 234 Query: 233 SMLEAIRNIA 242 + I Sbjct: 235 MNQKTANEIG 244 >gi|212637786|ref|YP_002314311.1| flagellar basal body rod protein [Shewanella piezotolerans WP3] gi|212559270|gb|ACJ31724.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 244 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 13/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A+N++N DT GF+ + + + + Q Sbjct: 1 MDRMLYTAATGAARVMEAQAIRANNLANADTTGFKADLERVNAMSVTATGNSLQTRVLAQ 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + S++ G+ TG LD A+ F++ + G TR G +G L + G+ Sbjct: 61 TQSSGFSQQSGALNPTGRTLDLAINDAGLFSVMTDDGEGYTRSGAIVPDANGQL-TLDGR 119 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRREN 174 P+ + PI +P+ E+F VG+ G +S + + + L + DM+ + + Sbjct: 120 -PIAGVDG-PIVLPEYRELF-VGDDGRLSIVADENGIIEEVGQLKLVNPDMN--IMSKGL 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ PL VTV GFLE SN ++ E+ + L+++F L+ EK + Sbjct: 175 DGLLYTQDRQPLPANDEVTVSSGFLEASNVQAVGELIAAMDLSRQFEIQVKLMKSAEK-L 233 Query: 235 LEAIRNI 241 EA + Sbjct: 234 AEAGNRL 240 >gi|300817269|ref|ZP_07097487.1| flagellar basal body rod protein FlgF [Escherichia coli MS 107-1] gi|307313518|ref|ZP_07593139.1| fagellar hook-basal body protein [Escherichia coli W] gi|300530245|gb|EFK51307.1| flagellar basal body rod protein FlgF [Escherichia coli MS 107-1] gi|306906686|gb|EFN37197.1| fagellar hook-basal body protein [Escherichia coli W] gi|315059543|gb|ADT73870.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli W] gi|323379898|gb|ADX52166.1| fagellar hook-basal body protein [Escherichia coli KO11] Length = 245 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNNKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|170680219|ref|YP_001742374.1| flagellar basal body rod protein FlgF [Escherichia coli SMS-3-5] gi|170517937|gb|ACB16115.1| lateral flagellar rod protein LfgF [Escherichia coli SMS-3-5] Length = 245 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLVTSDGIPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|331666547|ref|ZP_08367421.1| putative flagella basal body rod protein [Escherichia coli TA271] gi|331065771|gb|EGI37655.1| putative flagella basal body rod protein [Escherichia coli TA271] Length = 245 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 AEGMLVTADGFPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|212640498|ref|YP_002317018.1| flagellar hook-basal body protein [Anoxybacillus flavithermus WK1] gi|212561978|gb|ACJ35033.1| Flagellar hook-basal body protein [Anoxybacillus flavithermus WK1] Length = 274 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 35/276 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S L+Q+L ++ N++N +T GF+ F E++ ++ Sbjct: 1 MLRSMITAANTMNQLQQQLDVISHNIANVNTTGFKKRDAVFGELLAQQFTNLPTTDEAPR 60 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRGIILTRDGRF 106 Y+ + GS + T LD AL + +F + I TRDG F Sbjct: 61 LTPAGVRLGVGAKVASTYMQMKQGSVVKTDRPLDLALTKEGQFFRIFVDGAIQYTRDGAF 120 Query: 107 KVTD------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKGKVIAT 157 ++ + +V+A G Y VL+ PI + + V + G I+ G ++ T Sbjct: 121 YLSPSANNPDELMIVTADG-YAVLNENDEPITVRDGFKDIQVTQNGTMQFIAPNGNIMQT 179 Query: 158 --MGLYSVDMSQGFVRRENS--------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 +G+ + Q ++ + + + +++++ LE SN Sbjct: 180 VNIGVSYITRPQLMQALGDNRFAFPNGLNVEDATINLAGNNRNNISLQQYALEQSNVELA 239 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM +++ + + I +++ M I I S Sbjct: 240 TEMSELMITQRSYQLNARAITLSDQMMG-LINGIRS 274 >gi|283780136|ref|YP_003370891.1| flagellar basal body rod protein [Pirellula staleyi DSM 6068] gi|283438589|gb|ADB17031.1| flagellar basal body rod protein [Pirellula staleyi DSM 6068] Length = 250 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 14/251 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQK 55 M I A A Q++ + +N++N DT GF+ F + + + Sbjct: 1 MYYGLYISAAGAYAQNQKVEMITNNLANVDTSGFKKELGIFEARQSEAIERGYEQPGTRG 60 Query: 56 ISFVASGKEY----LSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTD 110 +S + G E+ +G+ +T + DFAL D +F +E +LTR G F + Sbjct: 61 VSDIGGGVEFKETVTDFSLGTLRATSSRTDFALPATDQFFEIERDGEALLTRSGNFHFSV 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 DG L + G VL P+ + + V G ISQ G + + + V + Sbjct: 121 DGVLRTQDGD-AVLAAGGTPLTLDP-SLPWRVLPGGLISQGGDTV-PLSIKQVSNFRSLE 177 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + N T + V+ G LE S N M EM +MI ++ + + +I + Sbjct: 178 KVGLNAFRANGELTDVPAELRD-VRSGSLELSTVNPMQEMVEMIASSRAYENNIKMIQHH 236 Query: 231 EKSMLEAIRNI 241 + + + Sbjct: 237 DGMTGSLVSRL 247 >gi|221635451|ref|YP_002523327.1| flagellar basal-body rod protein FlgG [Thermomicrobium roseum DSM 5159] gi|221158111|gb|ACM07229.1| flagellar basal-body rod protein FlgG [Thermomicrobium roseum DSM 5159] Length = 259 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 93/261 (35%), Gaps = 27/261 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQK 55 M+ + ++ A + RL T+A N++N +T GF+ + F E A + Sbjct: 1 MEALYFPAVSGVRAQQVRLDTIAHNLANLETDGFKAARADFTAVPPQEYRVARAGEAPLG 60 Query: 56 ISFVASGK----EYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKVT 109 + SG +G TG D AL G D + A E P G R GR + Sbjct: 61 PVPIGSGVELSATTRQFTLGPVEVTGDPFDLALAGPDTFVATELPDGTTAFRRSGRLSID 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSV 163 G LV G P+ +P ++ + G + S + I + L Sbjct: 121 ATGRLVFEDGSLL-----QPPLVLPAGAQLDRIAPDGTVFVRAAGSGDAQPIGRLELVRF 175 Query: 164 DMSQGFVRRENSG-ISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQ 218 QG + I+ P G V G E SN + + +M Q+I + Sbjct: 176 PNPQGLLAAGQGRWIATEAAGQPETGAPGEGNWPPVLSGVREHSNVDLVDQMTQLIMAQR 235 Query: 219 KFNSITTLIDENEKSMLEAIR 239 + + + ++ + A R Sbjct: 236 AYTANLRSLQTIDELIEIATR 256 >gi|313905150|ref|ZP_07838519.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] gi|313470053|gb|EFR65386.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] Length = 253 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 19/256 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV--------GAIK 49 M F + + +++L+T+++NM+N +T G++ + F E + Sbjct: 1 MYQGFYELTSGLITQQRKLNTISNNMANVETAGYKRDTMTVSTFQEEMLIRTGQTAKKNP 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 D+ A+ + Y GSF T + DFA+ GD +F +++P GI TR+G F V Sbjct: 61 TDLAVTTPIAAADQTYTDFTQGSFDQTDGKYDFAISGDGFFTIQTPNGIQYTRNGAFSVN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVIATMGLYSVDMS 166 G L V+ I+I +E F V + G I + G V + + + + Sbjct: 121 AQGILC-LDNIGTVVGANGGTIRI--TNENFVVDDYGRIMSAAGDGTVYGQLRITGFEDT 177 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 G + +E++G+ + P + V G+LE SNA+ + +M +M+ + S + Sbjct: 178 -GTLHKEDNGMF-SAPGGGQDLTGRTRVFNGYLEASNADMIGQMTEMMSSQRALQSAAQM 235 Query: 227 IDENEKSMLEAIRNIA 242 + ++ + +A ++ Sbjct: 236 LKMYDQVLSKASSDVG 251 >gi|168699694|ref|ZP_02731971.1| flagellar basal body rod protein [Gemmata obscuriglobus UQM 2246] Length = 238 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 7/221 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--NDIDQKISFVAS 61 +A + ++ A N++++ T G+R + F + I + I+ + Sbjct: 1 GLYSAGSALVIASEQQEVTAHNLAHSTTPGYRERGLVFESLDRHIGHAEEPTGDITGART 60 Query: 62 GKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + Y G TG D A+ E D +F L P G + TR+G F+V G LVS +G Sbjct: 61 VQAYNDFRPGPIQQTGHPYDLAIGEADRFFVLNGPNGPLYTRNGCFRVDPQGRLVSQAGY 120 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 D + + IP+ + G I+ G+ + T+ L ++ + Sbjct: 121 ALQTDQGN--VTIPEGTSRVVIASDGSITADGQPLGTVRLARFADTKQLTAAGPTLY--T 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 P + V +G E SN M ++I + ++ Sbjct: 177 ASPQAGRQDAPGRVIQGSREGSNVEPAAAMVRLIIGARYYD 217 >gi|283833629|ref|ZP_06353370.1| flagellar basal-body rod protein FlgF [Citrobacter youngae ATCC 29220] gi|291071312|gb|EFE09421.1| flagellar basal-body rod protein FlgF [Citrobacter youngae ATCC 29220] Length = 251 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 92/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V+ G L + G Sbjct: 59 ASTPGADMTPGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HPVIGEAG-PIAVPEGSE-VTIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ + + V G LE SN + M MI ++F Sbjct: 173 RGDDGMFRLSAAAQATRGPTLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 IISSVDDNAGRA 244 >gi|308186394|ref|YP_003930525.1| Flagellar basal-body rod protein flgF [Pantoea vagans C9-1] gi|308056904|gb|ADO09076.1| Flagellar basal-body rod protein flgF [Pantoea vagans C9-1] Length = 251 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 21/251 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + VA Sbjct: 1 MDHAIYTAMGAASQTLDQQAVTASNLANASTPGFRAQLNALRAV--PVSGWSLPTRTLVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T LD A++ D W A+ + G TR+G +++ G+L + G Sbjct: 59 ASTPGADMSQGAMDYTERPLDVAVQQDGWLAVRTADGSEAYTRNGNMQISPTGTL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 PV+ PI IPQ E + G I+ + + L Q R Sbjct: 118 N-PVMGDGG-PIVIPQGTE-ITIAADGSITGLNAGDSPNATVQLGKLKLVRAT-GQELQR 173 Query: 172 RENSGISPNIP-----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++ P L+ + + V G LE SN + M MI ++F + Sbjct: 174 SDDGMFRPTASTQATRGAALQADATMQVMPGVLEGSNVKPVETMVDMIANARRFEMQMKV 233 Query: 227 IDENEKSMLEA 237 I +++ +A Sbjct: 234 ITNVDENEQKA 244 >gi|255305280|ref|ZP_05349452.1| flagellar hook protein [Clostridium difficile ATCC 43255] Length = 331 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 98/328 (29%), Gaps = 89/328 (27%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M + G++ A + +L + +N++N T F+ + ++ Sbjct: 1 MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDSFYQTVLYASAPTAALG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ Q G+ T D ++GD + + ++ TRDG F + Sbjct: 61 GTNLGQVGVGSKISSINKDMTQGNVQPTNRPSDLMIDGDGYLPVVRQGTVMYTRDGSFNL 120 Query: 109 T-------------DDGSLVSASGKYPVL----------------------DMASVPIQI 133 G LV+ G V + P+ I Sbjct: 121 DTGFKAAAGPLQGVKGGRLVNGDGYMLVGQIMTGKYDANKGTFTPDAKPAAGWPNEPVVI 180 Query: 134 P-----------QKDEIFNVGEKGEI-------------------SQKGKVIAT------ 157 P Q +N+ + G I S+ G V Sbjct: 181 PLQSISPKDGTVQNVLEYNISKDGTIEFLLSDGQRTQFVYDIPDNSEVGVVPNPAIATDS 240 Query: 158 -----MGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 + Y+ G + P+ P + + +G +E SN + E Sbjct: 241 GKLQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGATGNIIQGAIEASNVDIAEEFT 300 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI ++ F + + +I +++ + E I Sbjct: 301 EMIIASRSFQANSKIISTSDEILQEIIN 328 >gi|237731008|ref|ZP_04561489.1| flagellar basal body rod protein FlgF [Citrobacter sp. 30_2] gi|226906547|gb|EEH92465.1| flagellar basal body rod protein FlgF [Citrobacter sp. 30_2] Length = 251 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V+ G L + G Sbjct: 59 ASTPGADMTPGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGEL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGF-VRRE 173 +PV+ A PI +P+ E + G IS +A +G + + G V+R Sbjct: 118 -HPVIGEAG-PIAVPEGSE-VTIAADGTISALNPGDPANTVAPVGRLKLVKATGLEVQRG 174 Query: 174 NSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L+ + V G LE SN + M MI ++F +I Sbjct: 175 DDGMFRLTQAAQATRGATLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKII 234 Query: 228 DENEKSMLEA 237 + + A Sbjct: 235 SSVDDNAGRA 244 >gi|158321570|ref|YP_001514077.1| flagellar basal body rod protein [Alkaliphilus oremlandii OhILAs] gi|158141769|gb|ABW20081.1| flagellar basal body rod protein [Alkaliphilus oremlandii OhILAs] Length = 357 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 95/196 (48%), Gaps = 4/196 (2%) Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 ++ I + +++ G+ TG+ L+FA++G +F +++P G + TR+G F Sbjct: 164 PAQDVIGTINGGKRFERTHVNFLQGTLEETGSPLNFAIDGTGFFRVQTPEGPMYTRNGSF 223 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 + +G+LV+A G Y +L PI + ++ F V E G++ G+++ + + + Sbjct: 224 SLGPNGNLVTAEG-YLLLGQNG-PINV--GNQEFQVKENGQVIVAGQLVNQISMTDISNL 279 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + S E V +GFLE SN +++ EM +MI + + + + + Sbjct: 280 NSLDKFGQSYYIVREGLEVEETPFTGEVLQGFLEGSNISTIDEMVKMISTMRSYEASSKM 339 Query: 227 IDENEKSMLEAIRNIA 242 + ++ + +A+ +I Sbjct: 340 VKAYDEMLQKAVNDIG 355 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 39/215 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV-GAIKNDIDQKI 56 M +++ ++ L ++NM+N +T GF+ + F EV+ I +I + Sbjct: 1 MFRGLYTAVSSMQTNQRMLDITSNNMANVNTTGFKKDVLVAETFPEVLIKKINGEIPNQT 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + + G +ST +F +E P G +RD +F V +DG L + Sbjct: 61 IKLNGNLDIDRDGEGYILSTER---------GFFTVEGPMGKSYSRDLKFTVDEDGYLRT 111 Query: 117 -----------ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 G + VL I++ + + ++G I+ G + Sbjct: 112 YGRTSGGEIDWTEGNF-VLSGQGTRIRVDNNN--VQIDQRGRITAGGGAMD--------- 159 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLE 200 + R + I + + V +G LE Sbjct: 160 ---LIHRPAQDVIGTINGGKRFERTHVNFLQGTLE 191 >gi|323490138|ref|ZP_08095358.1| flagellar basal-body rod protein [Planococcus donghaensis MPA1U2] gi|323396186|gb|EGA89012.1| flagellar basal-body rod protein [Planococcus donghaensis MPA1U2] Length = 278 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 110/279 (39%), Gaps = 40/279 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF----SEVVGAIKN------ 50 M + +A ++ + +N+SN +T GF+ + F +++ A++N Sbjct: 1 MFRGLYTATSGMMANNRQQQILTNNLSNANTPGFKEDQTVFRAFPEQLIKAVENSKKGTI 60 Query: 51 ---DIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDAWFALES 94 +I + V + + S G TG + D AL +G FA+ + Sbjct: 61 VPHNIGTLTTGVYTQEGIPSFLQGPLKETGNQTDIALLDELLPTNPDTQQKGSMVFAVAA 120 Query: 95 PRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKG 152 G T++G F V G L ++ G + VL PIQ+ F V + GEI G Sbjct: 121 EDGEVRYTKNGSFAVDTQGFLTTSDG-FSVLGEDLQPIQV--GSADFTVQDNGEILLANG 177 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE---------DLSGVTVKRGFLEDSN 203 + + + Q FV+ + + P D + +K+GF+E SN Sbjct: 178 AQGDRLWVGYTENPQQFVKEGQNLLRWAGAPEASPQFIDNFDLLDGTPSFMKQGFVEQSN 237 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + M M+ + F S +I ++SM +A+ I Sbjct: 238 VDLTKTMTDMMTTYRGFESNQKVIQAYDRSMEKAVNEIG 276 >gi|283834454|ref|ZP_06354195.1| flagellar basal-body rod protein FlgF [Citrobacter youngae ATCC 29220] gi|291070001|gb|EFE08110.1| flagellar basal-body rod protein FlgF [Citrobacter youngae ATCC 29220] Length = 245 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR S +K Sbjct: 1 MDRLIYTALSGATQTLLEQQISANNLANVNTNGFRADMAMASN--DKVKGGGFDTRFMAK 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 ESPSGVNDSTGVAEKTERPLDVAIQGSGYIAVQDKAGNEVYTRNGNIQQDDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NVVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 SEGMLVTADGIPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|296134367|ref|YP_003641614.1| fagellar hook-basal body protein [Thermincola sp. JR] gi|296032945|gb|ADG83713.1| fagellar hook-basal body protein [Thermincola potens JR] Length = 362 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 17/196 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + L + + ++A+N++N +T G++ +V+F +++ + Sbjct: 1 MLQALWSASSGMLGQQLAMDSIANNLANVNTTGYKKSRVEFQDLLYSEMRAPGKKTLRGE 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 Q + V + G T LD A+EG+A+FA+ P G TRDG F Sbjct: 61 IIPTGFQTGNGVRPAGTPVIFGQGIIQQTDNPLDLAIEGNAFFAVRRPDGSLAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 K+ G+LV+A G VLD P+ + + G I ++ + + + + + + Sbjct: 121 KLDAKGTLVTADGS-KVLDENLNPLTFDSP-QSLKIDNAGAILEQ-QAVGRIPGFVFEAA 177 Query: 167 QGFVRRENSGISPNIP 182 + E+ P Sbjct: 178 DKLEKVEDGYFRPTRE 193 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 10/158 (6%) Query: 87 DAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 D +F + P G + T++ + V +G L++ G YP++ + + D + ++ Sbjct: 209 DLYFQVLLPDGKVAYTKETQVSVDKNGRLITEKG-YPIVPE----VYLRLADGSVTLDKE 263 Query: 146 GEISQKGKVIATMGLYSVDMSQGFVRRENSGISP--NIPPTPLEDLSGVTVKRGFLEDSN 203 G ++ + + L G + ++ + N + + T++ LE SN Sbjct: 264 GNLTA-AVQVGKLRLVKFVNPAGLNKIGSNMYAESVNSGAATVAGPADYTLRSSALEGSN 322 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM MI + + + I +++ ML + Sbjct: 323 VEVAEEMVNMIIANRAYELSSRSIRTSDE-MLGMANQL 359 >gi|119477952|ref|ZP_01618052.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] gi|119448865|gb|EAW30107.1| Flagellar basal body rod protein [marine gamma proteobacterium HTCC2143] Length = 275 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 18/220 (8%) Query: 33 GFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL 92 GF+ + + +G D ++ + G+ I TG +LD A+ GD W A+ Sbjct: 61 GFQADFAQ-ARAMGVYYGDGHPTRAYAMTESPGTDFNRGALIETGRDLDMAVVGDGWIAV 119 Query: 93 ESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 ++P G TR G KV +G L++A+ PVL PI +P D+ +G G I+ + Sbjct: 120 QAPDGSEAYTRMGSLKVDPNGQLLTAT-DLPVLGDGG-PISLPPADK-ITLGADGTITIR 176 Query: 152 GK--------VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSN 203 ++ + L D + + + G+ + E + + ++ GF+E SN Sbjct: 177 PTGQPPEVLSIVDRIKLVKPDYAD--LDKGVDGLMRRLDGGQQEPDASIRLQSGFVESSN 234 Query: 204 ANSMYEMGQMIHLTQKFNSI---TTLIDENEKSMLEAIRN 240 N + E+ ++ L ++F +++EN + + +R+ Sbjct: 235 VNPVDELTAIMALARQFEINVKMMKVMEENSDAARQVLRS 274 >gi|327254555|gb|EGE66171.1| flagellar basal-body rod protein FlgF [Escherichia coli STEC_7v] Length = 245 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L + G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQNDQGQL-TIDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLVTSDGIPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|311070151|ref|YP_003975074.1| flagellar basal-body rod protein [Bacillus atrophaeus 1942] gi|310870668|gb|ADP34143.1| flagellar basal-body rod protein [Bacillus atrophaeus 1942] Length = 271 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 106/273 (38%), Gaps = 35/273 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV----------GA 47 M +A ++ ++R +++N++N +T G++ + F +++ G Sbjct: 1 MLKGLYTATSAMISQQRRTEMLSNNIANANTSGYKEDQGSMRAFPDMLLSRIEAKSPGGV 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-------------WFALES 94 K +I + V + GS ST D AL + ++ +E+ Sbjct: 61 SKKEIGSLNTGVYMQELKPLFTQGSLQSTDQPTDIALVENQLPVNGETNENAALFYPVET 120 Query: 95 PRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 G + ++ F + ++ L + +G PVL PI + +E F V E G ++ G+ Sbjct: 121 ANGDVRYSKSSTFSLNENNQL-TINGN-PVLSTDGQPITV--DNENFTVSENGTVTTNGR 176 Query: 154 VIATMGLYSVDMSQGFVRRENSGISP----NIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + + + R N S ++P ++K+G E SN + Sbjct: 177 TAGQIDIRMEEDVRNLKRDGNDLYSTADGNDLPSAAGNPEVSYSLKQGLSELSNVDVTSA 236 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +M + F + +I +KSM +A I Sbjct: 237 YTEMTEAYRTFEANQKVIQAYDKSMDKAANEIG 269 >gi|317130723|ref|YP_004097005.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] gi|315475671|gb|ADU32274.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] Length = 274 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 101/274 (36%), Gaps = 35/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M A + ++R + +N++N +T G++ + + Sbjct: 1 MLRGLYSAGAGMITQQRRQEMLTNNLANIETPGYKADQASIRSFPNQLIQAMGTNHMQKF 60 Query: 49 -KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-------------EGDAWFALES 94 N I + + V + + G T D AL + F +E+ Sbjct: 61 GTNVIGELSTGVYMQERTPNFRQGDLQETFNSTDIALLQGVVPTNEETGQQAALMFVIEN 120 Query: 95 PRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-SQKG 152 G + +R+G F V G L ++ G Y VLD I + +E F V GEI Sbjct: 121 SEGDLRYSRNGNFTVDGAGFLTTSQGNY-VLDADGDRINV--GNEDFIVRSNGEIIDANE 177 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMY 208 + IA + + + V+ + + + +++GFLE +N ++ Sbjct: 178 QFIAQLDIALIADPDQLVKEGAGLLRYDGDNAIESAIDNAEATFQLQQGFLERANVDAAQ 237 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M +M+ + F + ++ ++S+ A+ +I Sbjct: 238 TMTEMMSALRTFEANQRVLQAYDRSLERAVNDIG 271 >gi|317130722|ref|YP_004097004.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] gi|315475670|gb|ADU32273.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] Length = 279 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 108/276 (39%), Gaps = 38/276 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 S ++++L TV +N++N +T G++ V FS+++ N+ Sbjct: 5 NQSMITSAVTMGQMQRKLDTVGNNLANLNTTGYKRRDVSFSDLLFQQVNNQRDAHHEIGR 64 Query: 56 --------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGI-ILTRDG 104 S A G+ + E G+ +T ELD AL + +P G TRDG Sbjct: 65 TTPNGIRVGSGSAVGQTAVRMEQGALRTTERELDIALTEKGYLFELAPAEDGTRRFTRDG 124 Query: 105 RFK------VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGK 153 F V + +V+ +G Y VL PI +P E + ++G I + Sbjct: 125 AFYFSPNPDVDGENFIVNQNGDY-VLGSDGNPIAVPGHYESLRITDEGAILVTLDNGESV 183 Query: 154 VIATMGLYSVDMSQGFVRRENS-GISPNIP------PTPLEDLSGVTV-KRGFLEDSNAN 205 + + L V Q ++ + PN+ L + +G V +G LE SN + Sbjct: 184 AVGELQLVQVTKPQLLTSLGDNMYVFPNLEELGLAFGDVLNEAAGAQVFSQGMLEQSNVD 243 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +M+ + + + I ++ M + I Sbjct: 244 MGREMTEMMLTQRNYQFNSRAISIADEMMG-LVNTI 278 >gi|300854231|ref|YP_003779215.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] gi|300434346|gb|ADK14113.1| flagellar basal-body rod protein [Clostridium ljungdahlii DSM 13528] Length = 262 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 107/262 (40%), Gaps = 23/262 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + ++A A + +L+++++N++N+DTVG++ V+F+++V N Sbjct: 1 MLRAIWNSVSAMNAQQDKLNSISNNLANSDTVGYKKENVEFNDLVYETLNRKGYPTNSNG 60 Query: 57 ------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 + V + + G TG + D A++GD +F + G R G F V Sbjct: 61 TNTINGTGVKATEWIRDNAQGPIQQTGLKTDMAIDGDGYFKVTLGNGTAAYERAGNFTVD 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG------EKGEISQK----GKVIATMG 159 +G+LV ++G +++ + + +F + G+I + + Sbjct: 121 RNGNLVDSNGNKLEVNLTAEGSSLFNSGTVFKDNNFKVDEKTGQIYMNVGNQSVLYGKIN 180 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 +Y+ ++ P + + + +G LE SN + EM MI + Sbjct: 181 IYNAVGQDAMKSIGDNLYQP-ANNVQMNINTKAHIIQGSLEQSNVDLGREMTDMIMAQRS 239 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 F + + +++ M I ++ Sbjct: 240 FELASKGLTTSDE-MWGLINSM 260 >gi|163784308|ref|ZP_02179218.1| hypothetical protein HG1285_04693 [Hydrogenivirga sp. 128-5-R1-1] gi|159880426|gb|EDP74020.1| hypothetical protein HG1285_04693 [Hydrogenivirga sp. 128-5-R1-1] Length = 200 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 25/203 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + A + L +++N++N +TVGF+ + F +++ D Sbjct: 1 MIRALWTSATGMEAQQTNLDVISNNIANVNTVGFKKSRANFEDLIYQNLRDPGVMSSTET 60 Query: 54 --QKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRF 106 V G + GS + T LD A++G +F +E P G TR G F Sbjct: 61 RVPTGMQVGLGVKLSDISKTFSQGSLMKTDRPLDIAIQGKGFFKVELPGGGEAYTRAGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATM 158 ++ D G +V+ G ++ I P+ N+ E G + Q + + + Sbjct: 121 QIDDQGYIVTPEGYRL---SPNIQITAPETLISINISENGNVYAVRNEGGVQTTEELGQI 177 Query: 159 GLYSVDMSQGFVRRENSGISPNI 181 LY+ G + Sbjct: 178 NLYNFINPPGLQAIGQNLFKQTD 200 >gi|91224198|ref|ZP_01259461.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269965645|ref|ZP_06179758.1| Flagellar basal-body rod protein flgF [Vibrio alginolyticus 40B] gi|91191109|gb|EAS77375.1| putative flagellar basal-body rod protein [Vibrio alginolyticus 12G01] gi|269829713|gb|EEZ83949.1| Flagellar basal-body rod protein flgF [Vibrio alginolyticus 40B] Length = 243 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 110/248 (44%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--EMQGPGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ + ++E+P G TR G +V G+L + +G Sbjct: 59 TNSASTRFDAGDIVKTGRPLDVAVMGEGYLSVETPAGNEAYTRAGNIQVDTFGAL-TING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 +PVL P+ +P + + E+G++S V T+ L +++Q +++E Sbjct: 118 -FPVLGDNG-PLVVPDY-QKIEISERGQVSVIPPGGGAEIVAGTLKLVKPEINQ--LQKE 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + ++ P V + +E SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDSLLHSVDGVPFAADETVQLSPEHIEGSNVSAIDELVSVMSLTRNFEMQVRMMKTA-ET 231 Query: 234 MLEAIRNI 241 + +A + Sbjct: 232 LAKAGNKL 239 >gi|320179223|gb|EFW54181.1| Flagellar basal-body rod protein FlgF [Shigella boydii ATCC 9905] Length = 251 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASMPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W A+++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 + V+ A PI +P+ E + G IS + + L S+ V+ Sbjct: 118 -HQVIGEAG-PIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQ 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + GI T + + V G LE SN N++ M MI ++F Sbjct: 173 RGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I + + A Sbjct: 233 VISSVDDNAGRA 244 >gi|301645414|ref|ZP_07245355.1| flagellar basal body rod protein FlgF [Escherichia coli MS 146-1] gi|307136859|ref|ZP_07496215.1| flagellar basal body rod protein FlgF [Escherichia coli H736] gi|331640714|ref|ZP_08341861.1| putative flagella basal body rod protein [Escherichia coli H736] gi|301076298|gb|EFK91104.1| flagellar basal body rod protein FlgF [Escherichia coli MS 146-1] gi|315616826|gb|EFU97443.1| flagellar basal-body rod protein FlgF [Escherichia coli 3431] gi|331040088|gb|EGI12296.1| putative flagella basal body rod protein [Escherichia coli H736] Length = 245 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 91/239 (38%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A+N++N +T GFR +K Sbjct: 1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAM--ATNDKVKGGGFDTRYMAQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G ++ G T LD A++G + A++ G + TR+G + D G L G Sbjct: 59 EGASGVNDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLA-IDG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATM---GLYSVDMSQGFVRRE 173 + D PI +P I + G G +S G V ATM L VD+ + + Sbjct: 118 NLVLGDNG--PIILPPNA-IASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKN 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G+ P + + V GFLE SN +++ EM I + ++F + ++ E Sbjct: 175 PEGMLITADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233 >gi|327393472|dbj|BAK10894.1| flagellar basal-body rod protein FlgF [Pantoea ananatis AJ13355] Length = 252 Score = 167 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLDQQAVTASNLANASTPGFRAQLNALRAV--PVNGWSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T LD A++ D W A+ + G TR+G ++ DG+L + G Sbjct: 59 ASTPGADMSQGAMDYTERPLDVAMQQDGWLAVRTADGSEAYTRNGNMQIRSDGTL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRE 173 PV+ PI IPQ E + G I+ + L V + ++R Sbjct: 118 N-PVMGEGG-PIVIPQGSE-ITIAADGSITGLNAGDSPNATVQLGRLKLVQATGKELQRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L+ + V G LE SN + M MI ++F +I Sbjct: 175 DDGMFRPTAATQATRGAALQADPNMQVMPGVLEGSNVKPVETMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 ++ +A Sbjct: 235 SNVNENEQKA 244 >gi|77165837|ref|YP_344362.1| hypothetical protein Noc_2374 [Nitrosococcus oceani ATCC 19707] gi|254434880|ref|ZP_05048388.1| flagellar basal-body rod protein FlgF [Nitrosococcus oceani AFC27] gi|76884151|gb|ABA58832.1| Protein of unknown function DUF1078 [Nitrosococcus oceani ATCC 19707] gi|207091213|gb|EDZ68484.1| flagellar basal-body rod protein FlgF [Nitrosococcus oceani AFC27] Length = 246 Score = 167 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 12/208 (5%) Query: 32 VGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFA 91 GF+ +F + + + + + + + G STG ELD ++G+ W A Sbjct: 32 TGFQADLSQFRSM--PVFGEGHPTRVYAMAERPGVDFTPGPLQSTGRELDVVVQGEGWLA 89 Query: 92 LESP-RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 ++SP G TR G K+T +G L + +G +PVL + I IP + +G G +S Sbjct: 90 VQSPTGGEAYTRAGNLKITSNGILTTGAG-HPVLGEGGI-IAIPP-AQKIEIGADGTLSI 146 Query: 151 K--GKVIATM----GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 + G+ T+ + V+ +++ G+ I + V++ G LE SN Sbjct: 147 RPLGQAANTLAVLDRIKLVNPPLDQLQKGEDGLITMINGEKAPADALVSLVSGKLESSNV 206 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEK 232 + + + +MI L +++ T ++ E Sbjct: 207 SGVDALVEMIALARQYEMQTKMMKTAED 234 >gi|167567752|ref|ZP_02360668.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis EO147] gi|167574703|ref|ZP_02367577.1| flagellar basal body rod protein FlgG [Burkholderia oklahomensis C6786] Length = 258 Score = 167 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 86/234 (36%), Gaps = 38/234 (16%) Query: 31 TVGFRTIKVKFSEVVGAIKND----------------IDQKISFVASGKEYLSKEVGSFI 74 TVGF+ ++ F ++ I+ + V + K + GS Sbjct: 27 TVGFKRDRMVFEDLFYRIERQPGAQLDQNNAAPLGVQLGTGTRLVGTQKVFTD---GSVQ 83 Query: 75 STGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 +TG LD A+ G + ++ G TR G+ +G L +A G P+ I I Sbjct: 84 TTGQALDVAIVGKGFLQMQLANGETGYTRAGQLTKNAEGLLTNAQG-LPLQPE----IAI 138 Query: 134 PQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRENSGI------SPNI 181 P+ +GE G ++ K + + L G + ++ P Sbjct: 139 PENATEIVIGENGVVAVKTPGASELTEVGQVQLADFVNPAGLLSIGDNLYMETVASGPPN 198 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P D G +K+G LE SN + EM +MI + + T ++ + + Sbjct: 199 EGDPGTDAFG-KIKQGSLEASNVKVVDEMVEMIAAQRTYEMNTKVLSAADSMLQ 251 >gi|118581835|ref|YP_903085.1| hypothetical protein Ppro_3435 [Pelobacter propionicus DSM 2379] gi|118504545|gb|ABL01028.1| protein of unknown function DUF1078 domain protein [Pelobacter propionicus DSM 2379] Length = 259 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 17/253 (6%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G+ LA + ++ + +N++N +TVGF+ + FS+++ + Q Sbjct: 5 SAMLTGVTGLLANAEDINVIGNNLANVNTVGFKGSRTLFSDLLSTNIGNDSQIGRGTQIQ 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKY 121 K SF +T D A++G ++F LES G TR G F++ +DG LV+ G Y Sbjct: 65 KVDNIISQSSFDTTEITSDLAIQGSSFFLLESTTGSRYVTRAGAFRMNEDGYLVNPDG-Y 123 Query: 122 PVLDMASVPIQI-PQKDEIFNVGEKGEISQKGKVIAT------MGLYSVDMSQGFVRREN 174 VLD A I + P I ++ +GEI+ AT +G+ ++ + Sbjct: 124 FVLDEAGARILLDPAGTTITSIDSEGEITYVDSANATQTYGTKIGVATIPNVGALQKAGG 183 Query: 175 SGISPNIPPTP--------LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + D + LE SN + + ++I Q + + + Sbjct: 184 TLYDVAASVAAGSGAITPSAADGVVNKIYSNSLEASNVDMASQFVRLIQTQQAYTANSKT 243 Query: 227 IDENEKSMLEAIR 239 I ++ + Sbjct: 244 ITTADEMTDVVLN 256 >gi|308175373|ref|YP_003922078.1| flagellar hook-basal body protein [Bacillus amyloliquefaciens DSM 7] gi|307608237|emb|CBI44608.1| putative flagellar hook-basal body protein [Bacillus amyloliquefaciens DSM 7] gi|328555347|gb|AEB25839.1| flagellar basal body rod protein FlgG [Bacillus amyloliquefaciens TA208] Length = 273 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 110/274 (40%), Gaps = 35/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S A L+Q++ TV+ N+SN+DT G++ +FSE++ + ID Sbjct: 1 MLRSMLAASTALNQLQQQMDTVSSNLSNSDTTGYKARDSRFSELIRQQYDQIDDKKENSP 60 Query: 55 ---------KISFVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 ++ A L GS T +LD A + E+ + TRDG Sbjct: 61 NMRKTPPGLRLGAGAMMTPQLDSGQGSIKKTDRDLDIAFTSPYQYLQAEAGGRRVYTRDG 120 Query: 105 RFKVTDDG------SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT- 157 + G L++A G P+LD PIQI + + G ++ + Sbjct: 121 SLTLKPAGGNDRLLQLMTAGGN-PILDENGQPIQIDSSLTKLKISKTGTLTASDQTGTRS 179 Query: 158 ----MGLYSVDMSQGFVRRENSGISPNIPPT-PLEDLSGVT-----VKRGFLEDSNANSM 207 +G+ +V+ Q ++ S N +E+L+G +++G LE+SN + Sbjct: 180 QTFNLGIVNVNNPQELHAEGDNLFSVNGTGASAIEELTGAKRQEIGMEQGALENSNVDMS 239 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + I ML I ++ Sbjct: 240 KEMTDLIVSQRSYQLNSRTI-TLGDQMLGLINSV 272 >gi|254516990|ref|ZP_05129048.1| flagellar basal-body rod protein FlgF [gamma proteobacterium NOR5-3] gi|219674495|gb|EED30863.1| flagellar basal-body rod protein FlgF [gamma proteobacterium NOR5-3] Length = 249 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 18/214 (8%) Query: 30 DTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAW 89 T GF+ V+ V ++ + ++ + + G TG +LD A+ G W Sbjct: 30 STTGFKADLVEAETVY--LRGAGTETRAYNVIRDTGVDFDEGVLNQTGRDLDLAINGQGW 87 Query: 90 FALES---PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 FA++S G +TR G F++ + G LV+ +G+ + + PI +P ++G G Sbjct: 88 FAVQSLDGNGGEGVTRRGDFRIDELGQLVNGAGEALLGNDG--PIALPPF-SSLSIGSDG 144 Query: 147 EISQKG--------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF 198 +S V+ + L V+ + + G+ P+E V + G Sbjct: 145 TVSIVPLGELPNAQAVLDRIKL--VNPPTENLTKGEYGLLTTNGGLPMEADGNVKMVSGA 202 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 LE SN N + M +MI L+++F L+ E Sbjct: 203 LESSNVNPVTAMVRMIELSRQFEHYVKLMKVAED 236 >gi|291617021|ref|YP_003519763.1| FlgF [Pantoea ananatis LMG 20103] gi|291152051|gb|ADD76635.1| FlgF [Pantoea ananatis LMG 20103] Length = 252 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLDQQAVTASNLANASTPGFRAQLNALRAV--PVNGWSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T LD A++ D W A+ + G TR+G ++ DG+L + G Sbjct: 59 ASTPGADMSQGAMDYTERPLDVAMQQDGWLAVRTADGSEAYTRNGNMQIRSDGTL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRE 173 PV+ PI IPQ E + G I+ + L V + ++R Sbjct: 118 N-PVMGEGG-PIVIPQGSE-ITIAADGSITGLNAGDSPNATVQLGRLKLVQATGKELQRG 174 Query: 174 NSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ L+ + V G LE SN + M MI ++F +I Sbjct: 175 DDGMFRPTAATQATRGAALQADPTMQVMPGVLEGSNVKPVETMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 ++ +A Sbjct: 235 SNVNENEQKA 244 >gi|187778756|ref|ZP_02995229.1| hypothetical protein CLOSPO_02351 [Clostridium sporogenes ATCC 15579] gi|187772381|gb|EDU36183.1| hypothetical protein CLOSPO_02351 [Clostridium sporogenes ATCC 15579] Length = 350 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 111/331 (33%), Gaps = 92/331 (27%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ A + RL V +N++N +T F++ ++F +++ G N Sbjct: 17 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 76 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFAL---------------- 92 V G + + G+ +TG LD A++G +F + Sbjct: 77 GTNPRQVGLGVQVAGIFTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGD 136 Query: 93 ---ESPRGII---LTRDGRFKVTDDGSLVSASG----KYPVLDMA--------------- 127 G + T+DG F + +DGSL+++ G Y + A Sbjct: 137 DEGAINGGTMEVSFTKDGSFNLDEDGSLITSDGLRIMGYAIDSAAITKDATTGKIKVGFK 196 Query: 128 ------------SVPIQIPQK---------DEIFNVGEKGEISQ-----KGKVIATMGLY 161 VP+ IP + + F + + G I + + + Sbjct: 197 NADEDPKADATKLVPLAIPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMA 256 Query: 162 SVDMSQGFVRRE--------NSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMY 208 S G + NSG + + + + G +E SN + Sbjct: 257 SFKNEGGLEKMGKNLYRNSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAE 316 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +MI + F + +I ++ + E + Sbjct: 317 EFTEMIVANRAFQACGKMITTGDEILQELVN 347 >gi|328913715|gb|AEB65311.1| putative flagellar hook-basal body protein [Bacillus amyloliquefaciens LL3] Length = 274 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 110/274 (40%), Gaps = 35/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S A L+Q++ TV+ N+SN+DT G++ +FSE++ + ID Sbjct: 2 MLRSMLAASTALNQLQQQMDTVSSNLSNSDTTGYKARDSRFSELIRQQYDQIDDKKENSP 61 Query: 55 ---------KISFVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 ++ A L GS T +LD A + E+ + TRDG Sbjct: 62 NMRKTPPGLRLGAGAMMTPQLDSGQGSIKKTDRDLDIAFTSPYQYLQAEAGGRRVYTRDG 121 Query: 105 RFKVTDDG------SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT- 157 + G L++A G P+LD PIQI + + G ++ + Sbjct: 122 SLTLKPAGGNDRLLQLMTAGGN-PILDENGQPIQIDSSLTKLKISKTGTLTASDQTGTRS 180 Query: 158 ----MGLYSVDMSQGFVRRENSGISPNIPPT-PLEDLSGVT-----VKRGFLEDSNANSM 207 +G+ +V+ Q ++ S N +E+L+G +++G LE+SN + Sbjct: 181 QTFNLGIVNVNNPQELHAEGDNLFSVNGTGASAIEELTGAKRQEIGMEQGALENSNVDMS 240 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + I ML I ++ Sbjct: 241 KEMTDLIVSQRSYQLNSRTI-TLGDQMLGLINSV 273 >gi|312962294|ref|ZP_07776785.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6] gi|311283221|gb|EFQ61811.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6] Length = 207 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 25/204 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF+ + +F +++ IK Sbjct: 1 MLPALWVAKTGLSAQDTNLTTISNNLANVSTTGFKRDRAEFQDLLYQIKKQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 Q + V + G+ TG LD A+ G +F + P G TRDG F Sbjct: 61 ELPSGLQLGTGVQIVGTQKNFSAGNLQQTGQPLDMAINGRGFFQILQPDGTTSYTRDGTF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGL 160 + +G +V+A+G + +P + F VG G +S +VI + Sbjct: 121 HLDSNGQIVTANGF-----SLEPAVIVPADAKTFTVGNDGTVSITVAGNPASQVIGNLQT 175 Query: 161 YSVDMSQGFVRRENSGISPNIPPT 184 G N+ +P Sbjct: 176 ADFINPAGLQAMGNNLFRKPLPAA 199 >gi|167567751|ref|ZP_02360667.1| flagellar basal-body rod protein FlgF [Burkholderia oklahomensis EO147] gi|167574702|ref|ZP_02367576.1| flagellar basal-body rod protein FlgF [Burkholderia oklahomensis C6786] Length = 242 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 12/246 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ L A+N++N T GFR + + Sbjct: 1 MDALIYTVMSGAGRALHALEVHANNIANAQTDGFRAELEAART--RPVAGYGYDSRHLIE 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 LS + G T ELD A++G +F ++ P G TR G F++ DG+L + +G Sbjct: 59 LQANVLSADAGVVEETDRELDAAIQGRGYFTVQGPNGGNAYTRAGNFQIDADGAL-TVNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENS 175 + PV+ P+ +P +GE G +S +V A L VD + + + Sbjct: 118 R-PVIGEGG-PVVLP-DFTSVRIGEDGTLSITVAGDTEVQAVDRLELVDADASELVKNET 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 G+ PL V V G LE SN + + EM + L + F L + M Sbjct: 175 GLLVPRNGAPLPASDDVRVLGGHLERSNVSPVDEMTSTMALNRAFEVQMRLYNAAGD-MA 233 Query: 236 EAIRNI 241 +A + Sbjct: 234 DAGNRL 239 >gi|150388209|ref|YP_001318258.1| flagellar basal body rod protein [Alkaliphilus metalliredigens QYMF] gi|149948071|gb|ABR46599.1| flagellar basal body rod protein [Alkaliphilus metalliredigens QYMF] Length = 363 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 6/203 (2%) Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRD 103 + + + + S V K + G+ T LD AL G +F + +P G + TR+ Sbjct: 161 LYRPLGHVLGTMNSGVRIQKIETNFAQGAVAETANPLDVALNGQGFFRILTPNGEMYTRN 220 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ----KDEIFNVGEKGEISQKGKVIATMG 159 G F ++++G LV+ G + V A I + E + +KGEI G V+ + Sbjct: 221 GNFTMSNEGQLVTTEG-HEVEGNAGA-ITFNEAQLMAAENIQITDKGEILLDGVVVDQIQ 278 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + +++ + + S V +G+LE+SN NS+ EM +MI + Sbjct: 279 IVNINNVKDLRKHGQSYYYGEEGFELELAPFEGEVLQGYLEESNINSIQEMVEMISTFRD 338 Query: 220 FNSITTLIDENEKSMLEAIRNIA 242 + + ++ ++ + +A+ I Sbjct: 339 YEANQKVVQAYDEILQKAVGEIG 361 Score = 94.7 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 25/172 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 M + +++L ++N++N +T GF+ V F EV+ N + Sbjct: 1 MFRGLYTATSGMQTAQRKLDVTSNNIANINTTGFKKDVVAAESFPEVLIRKINHDIRPRP 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS- 116 F + +++E + G D +F +E+ +GI R+ F +DG L + Sbjct: 61 FNLNSGVEVTREGEAL---GLSTD-----AGFFRVETDQGISHNREASFAPDEDGFLRTY 112 Query: 117 ----------ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 + G Y +LD +Q+ + V +G+++ G + Sbjct: 113 RRDLNGEIDASRGNY-LLDATGQRVQV--DNGNLEVNNQGQLTFGGGATNLL 161 >gi|319648038|ref|ZP_08002255.1| FlhP protein [Bacillus sp. BT1B_CT2] gi|317389673|gb|EFV70483.1| FlhP protein [Bacillus sp. BT1B_CT2] Length = 271 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 41/276 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T+ N L++++ ++ N++NTDT G++ FSE++ +++K + VA Sbjct: 1 MITASNT----MFELQKQIDNISHNLANTDTTGYKAKNTSFSELIRQQIEQVNEKNNEVA 56 Query: 61 SGK---------------EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 + + + L+ + GS TG +LD AL +F + + TRDG Sbjct: 57 ASRKTPPGLRLGVGAVMTDRLTHKQGSLKETGRDLDIALTSPYQYFQVNVGGEVQYTRDG 116 Query: 105 RFKVTD------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG--EISQKGKVIA 156 F +T LV+ G + VLD I+ Q+ + V E G +S + A Sbjct: 117 AFYLTPAAGNANQMQLVTKEG-HAVLDENGNAIRFNQRYKHIKVDESGSVTVSSDNQGEA 175 Query: 157 TM----GLYSVDMSQGFVRRENSGISPNIP--PTPLEDLSG-----VTVKRGFLEDSNAN 205 + G+ Q ++ S + T L +L+G +++K+GFLE SN + Sbjct: 176 PLRFNLGIVRAVKPQALTEEGSNLFSVSDELRATALINLNGAGRQDISLKQGFLESSNVD 235 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + I ++ M I ++ Sbjct: 236 VSKEMTDLISSQRSYQMNSRAITMGDQMMG-LINSV 270 >gi|154687758|ref|YP_001422919.1| FlhP [Bacillus amyloliquefaciens FZB42] gi|154353609|gb|ABS75688.1| FlhP [Bacillus amyloliquefaciens FZB42] Length = 273 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 104/274 (37%), Gaps = 35/274 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S A L+Q++ TV+ N+SN+DT G++ +FSE++ + ID Sbjct: 1 MLRSMLTASTALHQLQQQMDTVSSNLSNSDTTGYKARDSRFSELIRQQYDHIDDKKENSP 60 Query: 55 ---------KISFVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 ++ L GS T +LD A + E+ + TRDG Sbjct: 61 NMRKTPPGLRLGAGTVMTPQLDSGQGSIKKTDRDLDIAFTSPYQYLQAEADGRRVYTRDG 120 Query: 105 RFKVTDDG------SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT- 157 + G L++A G P+LD PIQI + + G ++ + Sbjct: 121 SLSLKPAGGNDRLLQLMTAGGN-PILDENGQPIQIDSSLTQLKISKTGTLTASDQAGTRS 179 Query: 158 ----MGLYSVDMSQGFVRRENSGISPNIPPT------PLEDLSGVTVKRGFLEDSNANSM 207 +G+ +V+ Q ++ S N + + +++G LE SN + Sbjct: 180 QTFNLGIVNVNNPQALHAEGDNLFSVNGAGASAIEELTGANRQAIGMEQGALEGSNVDMS 239 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + I ML I ++ Sbjct: 240 KEMTGLIVSQRSYQLNSRTI-TLGDQMLGLINSV 272 >gi|83717394|ref|YP_438390.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis E264] gi|167614838|ref|ZP_02383473.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis Bt4] gi|257141423|ref|ZP_05589685.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis E264] gi|83651219|gb|ABC35283.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis E264] Length = 241 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 10/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ ++ A+NM+N T GFR A++ ++ Sbjct: 1 MDALIYTVMSGADRTLHGIAVHANNMANAQTDGFRAELEMAES--QAVRGYGYDSRHLLS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 L+ E G TG ELD A+ G +F +++ G TR G F++ DG+L + +G+ Sbjct: 59 PRANALNGEAGVVADTGRELDAAINGSGYFTVDTQGGEAYTRAGNFEIDADGAL-TVNGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSG 176 PV+ PI +P+ +GE G IS +V A L VD + + +G Sbjct: 118 -PVIGEGG-PIVLPEF-TSLRIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAG 174 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + PL V V G LE SN + + EM + L + F + + + Sbjct: 175 LLVARDGQPLPASDEVKVLGGHLERSNVSPVEEMIATMSLNRAFEVQMRMFNAAGEMAD 233 >gi|266621944|ref|ZP_06114879.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] gi|288866378|gb|EFC98676.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] Length = 246 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 14/250 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDIDQKIS 57 M + F + L ++ L+ A+N++N T G+R+ + F E + N I Sbjct: 1 MFSGFYTAASGVLMNQRALNISANNIANVKTSGYRSKRLVKTTFDEQLVRQMNGQTTAIG 60 Query: 58 FVAS----GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 ++ +E + G+ + TG D A+ GD F ++ LTR+G F +DG Sbjct: 61 GGSTISLAEREMTTHRQGALVDTGKNFDMAISGDGLFVIQGEDRQYLTRNGHFTQDEDGY 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVDMSQGFVRR 172 LV G V+ PIQ+ + F VGE G I + + + D Sbjct: 121 LVLK-GVGQVMGDGG-PIQVEEGG--FRVGENGIIYDNENGELEQIQIVVPDNYDNLTFY 176 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 +N + V +G LE+S N EM + + + + F S + + ++ Sbjct: 177 DNGTYGAENGVALTQVYP--EVFQGKLEESGVNLNSEMTRAMEVQRAFQSCSRALTIIDQ 234 Query: 233 SMLEAIRNIA 242 ++ I Sbjct: 235 MNQKSASEIG 244 >gi|258622489|ref|ZP_05717511.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM573] gi|258585189|gb|EEW09916.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM573] Length = 243 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 109/248 (43%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISF 58 M + + + ++N+SN DT GFR + + ++ G+ + + Sbjct: 1 MDNLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERAESFQLYGSGFD----GRTM 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSA 117 V + + G I TG LD A+ G+ + +E+P G TR G KV G++ + Sbjct: 57 VVTNSATTRFDSGDVIKTGRPLDVAIIGEGYLTVEAPQGGEAYTRAGNIKVDAFGAM-TI 115 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRE 173 +G +PVL + P+ +P+ + +GE+G++S G I L +++E Sbjct: 116 NG-FPVLGESG-PMVLPEY-QKIEIGERGQVSVIPPGGGAKIEVGTLKLTKPPIDQLQKE 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + N+ P V + +E SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDSLLHNVNGEPFPVDETVQLVPEHVEGSNVSAVDELLSVMSLTRNFEMQVRMMKSA-ET 231 Query: 234 MLEAIRNI 241 + +A + Sbjct: 232 LAQAGNKL 239 >gi|254227984|ref|ZP_04921414.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|262396034|ref|YP_003287887.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|151939480|gb|EDN58308.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] gi|262339628|gb|ACY53422.1| flagellar basal-body rod protein FlgF [Vibrio sp. Ex25] Length = 243 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 110/248 (44%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--EMQGPGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ + A+E+P G TR G +V G++ + +G Sbjct: 59 TNSASTRFDSGDIMKTGRPLDVAIMGEGYLAVETPAGNEAYTRAGNIQVDTFGAM-TING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 +PVL P+ +P + + E+G++S V T+ L +M+Q +++E Sbjct: 118 -FPVLGENG-PLVVPDY-QKIEISERGQVSVIPPGGGAEIVAGTLKLVKPEMNQ--LQKE 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + ++ P V + +E SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDSLLHSVDGVPFAADETVQLSPEHIEGSNVSAIDELISVMSLTRNFEMQVRMMKTA-ET 231 Query: 234 MLEAIRNI 241 + +A + Sbjct: 232 LAQAGNKL 239 >gi|259908811|ref|YP_002649167.1| flagellar basal body rod protein FlgF [Erwinia pyrifoliae Ep1/96] gi|224964433|emb|CAX55942.1| Flagellar basal-body rod protein [Erwinia pyrifoliae Ep1/96] gi|283478793|emb|CAY74709.1| Flagellar basal-body rod protein flgF [Erwinia pyrifoliae DSM 12163] gi|310767291|gb|ADP12241.1| flagellar basal body rod protein FlgF [Erwinia sp. Ejp617] Length = 251 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 92/250 (36%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLDQQAVTASNLANASTPGFRAQLNAARAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G+ T LD A++GD W A+++ G TR+G +V+ G L + G Sbjct: 59 ASTPGADMSQGALDYTERALDVAMQGDGWLAVQNDDGTEAYTRNGNMQVSPTGQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRE 173 K V+ PI IPQ + + G I+ + L V + R Sbjct: 118 K-AVMGDGG-PIAIPQGAQ-ITIAADGSITALNPGDAPNATVQLGKLKLVKAVGNELTRG 174 Query: 174 NSGISPNIPPTPLEDLSG------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ + + V V G LE SN + M MI ++F +I Sbjct: 175 DDGMFRVSAAAQAQRGATLPLDPTVKVMPGVLEGSNVKATQTMVDMIANARRFEMQMKII 234 Query: 228 DENEKSMLEA 237 +++ +A Sbjct: 235 SSVDENEQKA 244 >gi|224170008|ref|XP_002339332.1| predicted protein [Populus trichocarpa] gi|222874887|gb|EEF12018.1| predicted protein [Populus trichocarpa] Length = 251 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 102/254 (40%), Gaps = 28/254 (11%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEY----- 65 QRL N++N T G++ V + +GA + A+ + Sbjct: 1 MQQDMQRLDRTGLNLANALTPGYQREVVSARPLRLGAPSFAAMVGTAAAAAVADNAPAAS 60 Query: 66 -----------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 G+ STG LD AL G +F + +P G TR G F++ G L Sbjct: 61 PHAPAAGLLVQTDHRPGTLRSTGQNLDVALAGAGYFEVSTPGGPAYTRQGSFRLDAQGRL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQG 168 V+A G + V+ I + + +G I + +A + + Sbjct: 121 VTAQG-HAVMGRGGE---ILLQSSQVRIDAQGNIFDGDGVGRTDRPVAQLKVVEAPQPSQ 176 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R +S + P L D + + +++GF+E+SN +SM+EM Q++ + F S+ + Sbjct: 177 LRRLGEGLMSIDGQPGQLAD-ADIRIQQGFVENSNVSSMHEMVQLMQTMRHFESMQKVAL 235 Query: 229 ENEKSMLEAIRNIA 242 ++ +AIR + Sbjct: 236 GYDEMTGQAIRKLG 249 >gi|258625233|ref|ZP_05720145.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM603] gi|258582480|gb|EEW07317.1| Flagellar basal-body rod protein flgF [Vibrio mimicus VM603] Length = 243 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 104/246 (42%), Gaps = 12/246 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + ++N+SN DT GFR + + + V Sbjct: 1 MDNLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERAESF--QLHGAGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + + G I TG LD A+ G+ + +E+P G TR G KV G++ + +G Sbjct: 59 TNSATTRFDSGDVIKTGRPLDVAIIGEGYLTVEAPQGGEAYTRAGNIKVDAFGAM-TING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENS 175 +PVL + P+ +P+ + +GE+G++S G I L +++E+ Sbjct: 118 -FPVLGESG-PMVLPEY-QKIEIGERGQVSVIPPGGGAKIEVGTLKLTKPPIDQLQKESD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + N+ P V + +E SN +++ E+ ++ LT+ F ++ +++ Sbjct: 175 SLLHNVNGEPFPVDETVQLVPEHVEGSNVSAVDELLSVMSLTRNFEMQVRMMKSA-ETLA 233 Query: 236 EAIRNI 241 +A + Sbjct: 234 QAGNKL 239 >gi|85710165|ref|ZP_01041230.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] gi|85688875|gb|EAQ28879.1| flagellar basal-body rod protein [Erythrobacter sp. NAP1] Length = 247 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 82/241 (34%), Gaps = 15/241 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L A R VA+N++N T GFR F+ +++ + S Sbjct: 1 MDRLIYTALTGMDASMNRQRMVANNLANASTPGFRKE--VFTVTPSTLRDGSIEARSLAK 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 TG LD A+EG+A A +SP G + +R G +V G L + G Sbjct: 59 GAVRSADMAPAKVNPTGQPLDIAVEGEALIAFQSPGGGEVYSRRGDLRVAPTGLLENGEG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSVDMSQGFVR 171 PVL + P+ +P V G + + I + L S S + Sbjct: 119 -LPVLGESGAPVTVPAGFR-VTVAPDGTLLASDPAAPGEEPAAIDRIKLASPQGSA--LA 174 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + L V G LE SN + + MI + F +I Sbjct: 175 KGTDSFLRVPGGGVLPTDPTARVIPGALEGSNVETAGTLIDMIDAQRAFEQRARIIQTAG 234 Query: 232 K 232 + Sbjct: 235 E 235 >gi|119714998|ref|YP_921963.1| hypothetical protein Noca_0751 [Nocardioides sp. JS614] gi|119535659|gb|ABL80276.1| protein of unknown function DUF1078 domain protein [Nocardioides sp. JS614] Length = 282 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 99/279 (35%), Gaps = 40/279 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + L +N++N +T+GF++ F + + + Sbjct: 1 MLRSLFAGISGLRVNQTMLDVTGNNIANANTIGFKSSSTVFQDTLSQMLTSGSAAGGGLG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q V + G+ +TG D + GD F + TR G F Sbjct: 61 GTNPIQVGLGVQVAATNTNLNQGANQTTGRPTDLMINGDGMFVVMRGNVATYTRAGAFSW 120 Query: 109 TDDGSLVSASGKYP----------VLDMASVPIQIPQKDE--------IFNVGEKGEISQ 150 + G+LVS G V I +P+ + + +G G+++ Sbjct: 121 DNSGTLVSPGGGRVQGYTTFDAAGVHTGGLTDIVLPEDNGATPPLALSSYELGRDGKLTA 180 Query: 151 KGK-----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLE 200 + V+A + L + + G R + + E + S + G +E Sbjct: 181 TFEDGSKLVVAQVALANFNNPMGLARAGETSFTTTANSGVAELGVSGEGSRGALSPGSVE 240 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SN + E +I + F + + +I +++ + + + Sbjct: 241 MSNVDLAAEFTNLILAQRGFQASSRVITTSDQVLEDLVN 279 >gi|148554188|ref|YP_001261770.1| flagellar basal-body rod protein FlgF [Sphingomonas wittichii RW1] gi|148499378|gb|ABQ67632.1| flagellar basal-body rod protein FlgF [Sphingomonas wittichii RW1] Length = 247 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 17/242 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+A + R + A+N++N +TVGFR + + +K D + + Sbjct: 1 MDKLIYSSLSAMRSAMARQTMTANNLANANTVGFRGEMSSSTALW--LKGDGFDSRATNS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 G+ TG +LD AL+G D A++S G TR G ++ D G L + Sbjct: 59 GEVTSADMSEGTINETGRDLDVALQGKDTLLAVQSREGDEAYTRRGDLQIGDSGLLTTGD 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFV 170 G PVL PI +P D + + G IS + ++ + L S + S V Sbjct: 119 G-MPVLGDGG-PITLPPYDRLV-IAGDGTISIVPQGGDPTQMQMVDRLKLVSTNGSA--V 173 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + G+ L V++G +E SN N + MI ++ ++ ++ Sbjct: 174 AKGLDGLFRPQSGGTLGADPQAAVRQGAIEGSNVNVSTTLIDMIEASRDWDMQVKMMSSA 233 Query: 231 EK 232 + Sbjct: 234 QD 235 >gi|317047692|ref|YP_004115340.1| flagellar basal-body rod protein FlgF [Pantoea sp. At-9b] gi|316949309|gb|ADU68784.1| flagellar basal-body rod protein FlgF [Pantoea sp. At-9b] Length = 252 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 92/251 (36%), Gaps = 21/251 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A ++ S A N++N T GFR + V + + V Sbjct: 1 MDHAIYTAMGAASQTLEQQSVTASNLANASTPGFRAQLEAYRAV--PVNGWSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ +TG LD A+ D W A+ + G TR+G +++ G L + G Sbjct: 59 ASTPGADMSAGAMDNTGRALDVAVGQDGWLAVRTADGSEAYTRNGNIQISSTGIL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 PV+ PI +PQ E + G I+ + I + L Q R Sbjct: 118 N-PVMGDGG-PIAVPQGAE-LTIAADGSITSRNPGDAPNATVQIGRLKLVKAT-GQELQR 173 Query: 172 RENSGISPNIP-----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++ P L V V G LE SN + M MI ++F + Sbjct: 174 SDDGMFRPTAQTQATRGAALAQDVNVQVSPGVLEGSNVKPVETMVDMIANARRFEMQMKV 233 Query: 227 IDENEKSMLEA 237 I +++ +A Sbjct: 234 ISNVDENEQKA 244 >gi|531461|gb|AAA67879.1| orfF [Bacillus subtilis subsp. subtilis str. 168] Length = 271 Score = 165 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 41/276 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVV----------GA 47 M +A +A ++R +++N++N +T G++ + F E++ G Sbjct: 1 MLKGLYTATSAMIAQQRRTEMLSNNIANANTSGYKADQGSMRAFPEMLLSRIESKSPAGT 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-------------WFALES 94 + +I + V + GS ST D AL + ++ +++ Sbjct: 61 SRTEIGSVNTGVYMQELKPLFTQGSLKSTDQPTDIALIENQVPMSAETNEKAALFYPVQT 120 Query: 95 PRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 GI ++ F + ++ L + +G+ P+L PI + +E F V E G ++ G+ Sbjct: 121 ADGIRYSKSSTFSLNENNQL-TINGR-PILSTDRQPITV--DNENFTVSENGTVTTNGRT 176 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--------RGFLEDSNANS 206 + + + + R N S V RGF SN + Sbjct: 177 AGQIDVRMAEDVRNLKRDGNDLYSTADGNDLPSARGNNQVAYSLKTRRLRGF---SNVDV 233 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +M + F + +I +KSM +A I Sbjct: 234 TSAYTEMTEAYRSFEANQKVIQAYDKSMDKAANEIG 269 >gi|307293787|ref|ZP_07573631.1| fagellar hook-basal body protein [Sphingobium chlorophenolicum L-1] gi|306879938|gb|EFN11155.1| fagellar hook-basal body protein [Sphingobium chlorophenolicum L-1] Length = 280 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 110/276 (39%), Gaps = 40/276 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF I L+ A + LST A+N++N ++ F+ K F ++ A +++ Sbjct: 2 SFYISLSGLKAAQTDLSTTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRT 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLVSASG 119 + +S++ G+ +T LD A+ G+ +F ++ + I TR+G F V +D +V +G Sbjct: 62 QGISQQFTQGTIETTDKTLDLAITGEGFFTVKRSADDQIGYTRNGAFSVEEDRYVVDTTG 121 Query: 120 KY----PVLDMASVP-------------IQIPQK---------DEIFNVGEKGEIS---Q 150 P+ VP ++IP V E+G+I+ Sbjct: 122 ARLQVVPLDPTTGVPTATGTLTPASLTDLKIPTNWPDGGTGNQLTSVGVSEEGKITGVYA 181 Query: 151 KGKVI--ATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSN 203 G + + + + +G + ++ + N P+ +V+ G LE SN Sbjct: 182 DGSTVYLGATAIAAFNSQEGLRQSGDAHWTATNASGAPMLGTGNSGLFGSVRSGALERSN 241 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E+ +I + F + + I+ + Sbjct: 242 VDITEELVNLISAQRNFQANSKAIEAANTLSTTIVN 277 >gi|284007174|emb|CBA72458.1| flagellar basal body rod protein FlgF [Arsenophonus nasoniae] Length = 248 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 14/251 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + S + +N++N T GF+ S V + Q + Sbjct: 1 MDHVIYTAMNGARHALETQSVITNNLANVSTNGFKAQLAA-SRFVPIEGSVGHQTRTLTI 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ T LD L + A++ G TR+G +++ +G L+ + Sbjct: 60 ASTPGTDQRAGAMNYTARSLDVTLSDGGYLAVQLADGREAYTRNGNIQISANGELMIQN- 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG-LYSVDMSQGFVRRE 173 P++ I +P + + + E G I+ + +G + V S + R Sbjct: 119 -RPLMGDGGE-IMVPPQAQ-LTIAEDGIITGYIPTAPPTQLGQVGQIKRVKPSAQQLVRG 175 Query: 174 NSGISPNIPPT--PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 G+ P PL + V + G LE SN N M MI + F +I Sbjct: 176 EEGLFHLAEPNAQPLVMDNSVKLLSGVLEGSNVNPAQAMVDMIANARTFEMQMKVIHSAN 235 Query: 232 KSMLEAIRNIA 242 + A + +A Sbjct: 236 DNAQRANQLLA 246 >gi|294013086|ref|YP_003546546.1| flagellar hook protein FlgE [Sphingobium japonicum UT26S] gi|292676416|dbj|BAI97934.1| flagellar hook protein FlgE [Sphingobium japonicum UT26S] Length = 280 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 109/276 (39%), Gaps = 40/276 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF I L+ A + LST A+N++N ++ F+ K F ++ A +++ Sbjct: 2 SFYISLSGLKAAQTDLSTTANNVANVNSTAFKKSKAVFGDIFAAAPMQTTTQVAGQGVRT 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLVSASG 119 + +S++ G+ +T LD A+ G+ +F ++ + I TR+G F V +D +V +G Sbjct: 62 QGISQQFTQGTIETTDKTLDLAITGEGFFTVKRSADDQIGYTRNGAFSVEEDRYVVDTTG 121 Query: 120 KY----PVLDMASVP-------------IQIPQK---------DEIFNVGEKGEIS---Q 150 P+ P ++IP V E+G+I+ Sbjct: 122 ARLQVIPLDPTTGAPTVTGTLTPASLTDLKIPTNWPDGGTGNQLTSVGVSEEGKITGVYA 181 Query: 151 KGKVI--ATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSN 203 G + + + + +G + ++ + N P+ +++ G LE SN Sbjct: 182 DGSTVYLGATAIAAFNSQEGLRQSGDAHWTATNASGAPMLGTGNSGLFGSIRSGALERSN 241 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E+ +I + F + + I+ + Sbjct: 242 VDITEELVNLISAQRNFQANSKAIEAANTLSTTIVN 277 >gi|221311596|ref|ZP_03593443.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] gi|221315923|ref|ZP_03597728.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320836|ref|ZP_03602130.1| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. JH642] gi|1763701|emb|CAB05941.1| flhP [Bacillus subtilis subsp. subtilis str. 168] Length = 268 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 104/269 (38%), Gaps = 30/269 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVA 60 Query: 61 SGK--------------EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGR 105 + L + GS T +LD A + + TRDG Sbjct: 61 KARKTPPLAPLVGAMMSSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDGA 120 Query: 106 FKVTD------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-KGKVIAT- 157 VT LV+ +G YPVLD + I + + + G ++ G + Sbjct: 121 LYVTPSAANANQLQLVTGNG-YPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRF 179 Query: 158 -MGLYSVDMSQGFVRRENSGISPNIPPT----PLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 +G+ V+ Q N+ S + + + +++G LE SN + +M Sbjct: 180 NLGVVQVNNPQELKSEGNNLFSIDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMTD 239 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + + I ML I ++ Sbjct: 240 LITSQRSYQLNSRTI-TMGDQMLGLINSV 267 >gi|297585402|ref|YP_003701182.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297143859|gb|ADI00617.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 276 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 105/277 (37%), Gaps = 38/277 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S L+++L TV +N++N +T+GF+ V F++++ N+++ Sbjct: 1 MNQSMINSAVTMGQLQKKLDTVGNNLANVNTIGFKRRDVSFNDLLFQQVNNLNRTEFEGG 60 Query: 54 -------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRD 103 ++ + +G+ + + G+ TG +LDFA+ +F +P TR+ Sbjct: 61 RDTPLGIRRGTGAIAGQTEIRFDQGAIRETGRDLDFAMTEKGYFFEIAPDEEGNRRFTRE 120 Query: 104 GRFKV------TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--- 154 G F + +V++ G + VL P+ +P +E V G + Sbjct: 121 GNFYYTPNPADDAENFIVNSQGDF-VLGADGEPLVVPVPNEGVTVLNNGTVRVNFAEDEE 179 Query: 155 --IATMGLYSVDMSQGFVRRENSG--------ISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 I + ++ Q + + + + V + LE SN Sbjct: 180 VDIGQFQMVNITRPQLLQNVGENNFVFGDLDELGLGFDDVLEDAVGENVVLQRALEMSNV 239 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + EM MI + + + I ++ M + N+ Sbjct: 240 DMSREMTSMIEAQRAYQFNASAIGITDQ-MKGLVTNL 275 >gi|167576663|ref|ZP_02369537.1| flagellar basal-body rod protein FlgF [Burkholderia thailandensis TXDOH] Length = 241 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 10/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ ++ A+NM+N T GFR A++ + Sbjct: 1 MDALIYTVMSGADRTLHGIAVHANNMANAQTDGFRAELEMAES--QAVRGYGYDSRHLLN 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 L+ E G TG ELD A+ G +F +++ G TR G F++ DG+L + +G+ Sbjct: 59 PRANALNGEAGVVADTGRELDAAINGSGYFTVDTQGGEAYTRAGNFEIDADGAL-TVNGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSG 176 PV+ PI +P+ +GE G IS +V A L VD + + +G Sbjct: 118 -PVIGEGG-PIVLPEF-TSLRIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAG 174 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + PL + V V G LE SN + + EM + L + F + + + Sbjct: 175 LLVARDGQPLPVSNEVKVLGGHLERSNVSPVEEMIATMSLNRAFEVQMRMFNAAGEMAD 233 >gi|302387773|ref|YP_003823595.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] gi|302198401|gb|ADL05972.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] Length = 267 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 104/272 (38%), Gaps = 37/272 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKF-SEVVGAIKN------ 50 M F + L + L+ +++NM N T G+++ K F E++ N Sbjct: 1 MFHGFYNLASGMLYQNRNLNVISNNMVNVSTPGYKSDKLVSTTFKEEMLYRNGNRNKSNP 60 Query: 51 -DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKV 108 +I A+ S + G+ TG LDFAL +F +E G TR+G F++ Sbjct: 61 VEIGTVSMIRAARNTNTSYDQGTLEETGGNLDFALTKPGFFTIEDTNGNRLYTRNGSFRL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------------------ 150 D+G L +S VL PI++P V + G I + Sbjct: 121 DDEGYLCLSS-MGRVLGEDGNPIELPSD--HITVDKSGNIYEVPLKGLGTDEDGGDSEDT 177 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + ++ +G+ V+ +N + T + ++ +E SN + + EM Sbjct: 178 EPTLLGKIGVADFADYTQLVKGDNGTFTTTAEAT----AANGGIQWKTIERSNIDPIEEM 233 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M+ + S ++ ++ M + +I Sbjct: 234 TSMMSSQRASQSAAQVLKMYDQLMSRIVSDIG 265 >gi|91791415|ref|YP_561066.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] gi|91713417|gb|ABE53343.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 253 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 107/258 (41%), Gaps = 24/258 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + I + A +++L +A N++N T G++T ++ F VV +++ Q +S Sbjct: 1 MIDALYIAESGLDAKQKQLDAIAHNIANVSTPGYKTSQMSFMTVVQEDRDNSGQIVSSQG 60 Query: 58 -FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLV 115 V + + L VG TG LD A+ G + +E G ++ +R GR G L Sbjct: 61 LGVMAQQSPLDMSVGKMEQTGRPLDVAINGAGFLEVEQGNGKLLYSRGGRLITDAQGYLS 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDM----- 165 + +G + +QIP E + G +S K I + L + Sbjct: 121 TENGLRL-----TSMLQIPPDAEDVRIATDGMLSAKLPGNEVIEIGQVQLVNFVDMSAIK 175 Query: 166 --SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + ++ + E GV +++G LE SN + EM M+ + + Sbjct: 176 AVGNNLFEVDQEALNTAYYGSVGESGMGV-LQQGMLESSNVSMNQEMMNMMMAQRSYQLN 234 Query: 224 TTLIDENEKSMLEAIRNI 241 L+ +++ +LE + N+ Sbjct: 235 ARLVQVSDQ-ILETLNNL 251 >gi|327478810|gb|AEA82120.1| flagellar basal-body rod protein FlgF [Pseudomonas stutzeri DSM 4166] Length = 234 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 14/230 (6%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 + A L ++N++N +T GFR + V A++ +S Sbjct: 1 MTAASRTMMSLQVRSNNLANVNTPGFRADLERAQAV--AVEGYGYDSRHMALIENNGVSL 58 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 G ++TG ELDFA++G+ LE G TR G +V +G L + +G+ VL Sbjct: 59 AAGPMVATGRELDFAVKGNGLIVLEDGEGEAYTRQGSMQVDAEGRL-TLNGR-AVLGEGG 116 Query: 129 VPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRENSGISPNIP 182 PI +P+ D +G G +S + + L V + + +G+ Sbjct: 117 -PIVLPEYDR-MEIGNDGTVSIMAPGDWMMAEVDRIRLVDV--PAANLMKNQAGLLVTRD 172 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 P + V + GFLE SN +++ E+ + L + F + ++ E Sbjct: 173 GEPAQPSEDVRLASGFLESSNVSAIDELASTMSLNRLFETQVKMMKAAED 222 >gi|323492337|ref|ZP_08097490.1| flagellar basal body rod protein [Vibrio brasiliensis LMG 20546] gi|323313384|gb|EGA66495.1| flagellar basal body rod protein [Vibrio brasiliensis LMG 20546] Length = 243 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 102/250 (40%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + Q ++N+SN DT GFR + S + ++ + V Sbjct: 1 MDSLLFTATSGASRVLQAQHVRSNNLSNADTAGFRADMERVSSI--PLQGSGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ GD + +++ G TR G KV G+L S +G Sbjct: 59 TNSASTRFDEGDIVKTGRPLDVAVMGDGYLTVQTADGQEAYTRAGNIKVDPFGAL-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 + VL I + + E+G IS + T+ L + +Q + + Sbjct: 118 -FAVLGDGGPLIL--PDYQKVEISERGRISVVPPGGGAELEVGTLKLVKPETNQ--LEKH 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + ++ P V + +E SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDSLLHSVDGNPFVADETVQLAPEHIEGSNVSAIDELLNVMSLTRNFEMQVRMMKTA-ET 231 Query: 234 MLEAIRNIAS 243 + +A + S Sbjct: 232 LAQAGNKLMS 241 >gi|188534169|ref|YP_001907966.1| flagellar basal body rod protein FlgF [Erwinia tasmaniensis Et1/99] gi|188029211|emb|CAO97083.1| Flagellar basal-body rod protein [Erwinia tasmaniensis Et1/99] Length = 251 Score = 164 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 92/252 (36%), Gaps = 23/252 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLDQQAVTASNLANASTPGFRAQLNAARAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G+ T LD A++GD W A+++ G TR+G +V+ G L + G Sbjct: 59 ASTPGADMTQGALDYTERPLDVAMQGDGWLAVQTANGTEAYTRNGNMQVSPTGQL-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 V+ I IPQ E + G I+ + + L ++ + Sbjct: 118 N-AVMGDGGA-IAIPQGSE-ITIAADGSITALNPGDPPNATVQLGRLKLVQARGNE--LT 172 Query: 172 RENSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 R + G+ T E + V G LE SN + M MI ++F Sbjct: 173 RGDDGMFRVSASTQAQRGATLEADPAMKVMPGVLEGSNVKATQTMVDMIANARRFEMQMK 232 Query: 226 LIDENEKSMLEA 237 +I +++ +A Sbjct: 233 VISSVDENEQKA 244 >gi|292487940|ref|YP_003530815.1| flagellar basal-body rod protein FlgF [Erwinia amylovora CFBP1430] gi|292899159|ref|YP_003538528.1| flagellar basal-body rod protein FlgF [Erwinia amylovora ATCC 49946] gi|291199007|emb|CBJ46118.1| flagellar basal-body rod protein FlgF (proximal rod protein) [Erwinia amylovora ATCC 49946] gi|291553362|emb|CBA20407.1| Flagellar basal-body rod protein flgF [Erwinia amylovora CFBP1430] gi|312172061|emb|CBX80318.1| Flagellar basal-body rod protein flgF [Erwinia amylovora ATCC BAA-2158] Length = 251 Score = 164 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLDQQAVTASNLANASTPGFRAQLNAARAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T LD A++GD W A+++ G TR+G +V+ G L S G Sbjct: 59 ASTPGADMSQGALDYTERALDVAMQGDGWLAVQTADGSEAYTRNGNMQVSPTGQL-SVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRE 173 V+ PI IPQ + + G I+ + L V + R Sbjct: 118 N-AVMGDGG-PIAIPQGAQ-ITIAADGSITALNPGDAPNATVQLGKLKLVKAVGNELTRG 174 Query: 174 NSGISPNIPPTPLEDLSG------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ + + + V G LE SN + M MI ++F +I Sbjct: 175 DDGMFRVSASAQAQRGATLPLDPTMKVMPGVLEGSNVKATQTMVDMIANARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 +++ +A Sbjct: 235 SSVDENEQKA 244 >gi|239834442|ref|ZP_04682770.1| flagellar basal body rod protein FlgG [Ochrobactrum intermedium LMG 3301] gi|239822505|gb|EEQ94074.1| flagellar basal body rod protein FlgG [Ochrobactrum intermedium LMG 3301] Length = 226 Score = 164 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 19/197 (9%) Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 V + GSF TG D AL G WF ++SP G + TR G F DG LV+ Sbjct: 35 GVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNPDGQLVT 94 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQGF- 169 G PV I IP + + G++ K + + + L + G Sbjct: 95 LDGN-PVEPA----ITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGLE 149 Query: 170 -----VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + RE + P + G ++K+G+LE SN + + E+ +I + + + Sbjct: 150 PLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITAQRAYEMNS 208 Query: 225 TLIDENEKSMLEAIRNI 241 +I ++ +N+ Sbjct: 209 KVIQAADEMAATVSKNL 225 >gi|168180921|ref|ZP_02615585.1| flagellar hook protein FlgE [Clostridium botulinum NCTC 2916] gi|182668204|gb|EDT80183.1| flagellar hook protein FlgE [Clostridium botulinum NCTC 2916] gi|322806984|emb|CBZ04554.1| flagellar hook protein FlgE [Clostridium botulinum H04402 065] Length = 334 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 112/331 (33%), Gaps = 92/331 (27%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ A + RL V +N++N +T F++ ++F +++ G N Sbjct: 1 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFAL---------------- 92 V G + + G+ +TG LD A++G +F + Sbjct: 61 GTNPRQVGLGVQVAGIFTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGD 120 Query: 93 ---ESPRGII---LTRDGRFKVTDDGSLVSASG----KYPVLDMA--------------- 127 G + T+DG F + +DGSL+++ G Y + D A Sbjct: 121 NEGAINGGTMEVSFTKDGSFNLDEDGSLITSDGLRIMGYAINDAAITKDATTGKIKVGFK 180 Query: 128 ------------SVPIQIPQK---------DEIFNVGEKGEISQ-----KGKVIATMGLY 161 VP+ IP + + F + + G I + + + Sbjct: 181 NADEDPKADATKLVPLAIPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMA 240 Query: 162 SVDMSQGFVRRE--------NSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMY 208 S G + NSG + + + + G +E SN + Sbjct: 241 SFKNEGGLEKMGKNLYRNSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAE 300 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +MI + F + +I ++ + E + Sbjct: 301 EFTEMIVANRAFQACGKMITTGDEILQELVN 331 >gi|145297455|ref|YP_001140296.1| lateral flagellar basal-body rod protein LfgF [Aeromonas salmonicida subsp. salmonicida A449] gi|142850227|gb|ABO88548.1| lateral flagellar basal-body rod protein LfgF [Aeromonas salmonicida subsp. salmonicida A449] Length = 236 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 17/239 (7%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFVASGKEYLS 67 ++ A+N++N +T GFR F V A+ D Sbjct: 1 MSGAQHTLMAQQIRANNLANVNTAGFRAD---FERVSAYALTGDGYPSRVMAREEMAGTD 57 Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDM 126 + G+ + TG +LD A+ G+ + +++ G TR G +V +G L S PVL Sbjct: 58 FKAGALMQTGRKLDVAVRGEGFITVQTADGKEAYTRAGNLEVDAEGLLTLNS--RPVLGD 115 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQGFVRRENSGISPN 180 + +P + G+ G +S + + L + D + + + G+ Sbjct: 116 GGE-MVLPAY-RDLSFGKDGSLSITPPGGGARLDVGRLKLVNPDPVE--LVKGPDGLFRL 171 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E V + GFLE +N N++ E+ + LT+ F L+ + + R Sbjct: 172 RQGGDAETSEQVVLASGFLEGANVNAVDELISSMSLTRNFELQVKLMKTADDQARQGAR 230 >gi|315649859|ref|ZP_07902942.1| fagellar hook-basal body protein [Paenibacillus vortex V453] gi|315274833|gb|EFU38214.1| fagellar hook-basal body protein [Paenibacillus vortex V453] Length = 281 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 51/280 (18%) Query: 13 LALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVVGAIKNDIDQKISFVASGKEYLS-- 67 + EQR +TV N++N +T G++ ++ F EV+ ++ D + GK Sbjct: 1 MTQEQRHNTVTQNIANVNTAGYKATNSVQRSFPEVLVSMIGGNDSSNAGRKLGKFNTGVY 60 Query: 68 -------KEVGSFISTGTELDFAL--------------------------EG------DA 88 G+ TG DFAL G + Sbjct: 61 AEESISLYTEGALRETGKNTDFALVSSFTVQNPATGQDYPFDASGRYVDENGEVIYRPEG 120 Query: 89 WFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +F ++ G TR+G F+V+ +G+L+S SG Y VLD + PI + F V E+GE Sbjct: 121 FFTVQDENGDTRYTRNGSFRVSPEGNLLSESG-YQVLDNNNRPIILTGSASDFTVNEQGE 179 Query: 148 I-SQKGKVIATM-GLYSVDMSQGFVRRENSGISPNIPPTPL---EDLSGVTVKRGFLEDS 202 I G + G+ V G +R N + P + V++GF+E S Sbjct: 180 IMDAAGNGTGIILGVSIVSQPHGLIREGNGVFRMSDPDGEVRFMTPADNGVVRQGFIEGS 239 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + M ++ + + + ++ ++++ +A+ I Sbjct: 240 NVDPTQSMVELTAALRAYETNQKIVQYYDRTLEKAVNEIG 279 >gi|255767784|ref|NP_391520.2| flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] gi|254763418|sp|P39753|FLHP_BACSU RecName: Full=Flagellar hook-basal body complex protein flhP gi|225185412|emb|CAB15656.2| putative flagellar hook-basal body protein [Bacillus subtilis subsp. subtilis str. 168] Length = 269 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVA 60 Query: 61 SGK---------------EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 + L + GS T +LD A + + TRDG Sbjct: 61 KARKTPPGLRLGVGAMMSSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDG 120 Query: 105 RFKVTD------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-KGKVIAT 157 VT LV+ +G YPVLD + I + + + G ++ G + Sbjct: 121 ALYVTPSAANANQLQLVTGNG-YPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQR 179 Query: 158 --MGLYSVDMSQGFVRRENSGISPNIPPT----PLEDLSGVTVKRGFLEDSNANSMYEMG 211 +G+ V+ Q N+ S + + + +++G LE SN + +M Sbjct: 180 FNLGVVQVNNPQELKSEGNNLFSIDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMT 239 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + + I ML I ++ Sbjct: 240 DLITSQRSYQLNSRTI-TMGDQMLGLINSV 268 >gi|163803170|ref|ZP_02197053.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] gi|159173070|gb|EDP57903.1| putative flagellar basal-body rod protein [Vibrio sp. AND4] Length = 243 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 105/246 (42%), Gaps = 12/246 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--ELQGSGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ + ++E+P G TR G KV G++ S +G Sbjct: 59 TNSAATRFDSGDIMKTGRPLDVAIMGEGYLSVETPTGNEAYTRAGNIKVDTFGAM-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENS 175 +PVL P+ +P + + E+G +S G + L V +++E+ Sbjct: 118 -FPVLGENG-PLVVP-DFQKIEISERGRVSVIPPGGGAEVEVGTLKMVKPPFDQLQKESD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + ++ P V + +E SN +++ E+ ++ LT+ F ++ +++ Sbjct: 175 SLLHSLDGAPFPADETVQLSPEHIEGSNVSAIDELLSVMSLTRNFEMQVRMMKTA-ETLA 233 Query: 236 EAIRNI 241 +A + Sbjct: 234 QAGNKL 239 >gi|103488388|ref|YP_617949.1| flagellar basal-body rod FlgF [Sphingopyxis alaskensis RB2256] gi|98978465|gb|ABF54616.1| Flagellar basal-body rod FlgF [Sphingopyxis alaskensis RB2256] Length = 247 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 17/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+A R + +A+N++N T GFR + + + + Sbjct: 1 MDRLIYTSLSAMRGSMARQTAIANNLANAQTPGFRADMASAQSLW--LDGSGLDARAMAS 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ STG +LD A++GDA +++ G TR G +V+ G L + G Sbjct: 59 EEVLGADMKAGTVTSTGRDLDIAMQGDALLVVQAKNGEEAYTRRGDLQVSPSGLLTTGDG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 +PV P+ IP D ++ ++G + + + + + L + S+ V Sbjct: 119 -HPVQGGQG-PVTIPPADA-ISIDQQGRVWIVPQGGDPENPQEVDRLRLATPAGSE--VA 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ L D + +E SN + + +MI ++ +++ +I + Sbjct: 174 KGLDGLFRVKGGGILPDDPEARLLTRSIEGSNVTATSALVEMIEASRSWDTQLKMIGDVR 233 Query: 232 KSMLEAIRNI 241 M A N+ Sbjct: 234 D-MDSATANL 242 >gi|126445461|ref|YP_001061247.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 668] gi|167725931|ref|ZP_02409167.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei DM98] gi|254182893|ref|ZP_04889486.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1655] gi|254299685|ref|ZP_04967134.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 406e] gi|126224952|gb|ABN88457.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 668] gi|157809369|gb|EDO86539.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 406e] gi|184213427|gb|EDU10470.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 1655] Length = 241 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 11/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ ++ A+NM+N T GFR ++ + Sbjct: 1 MDALIYTVMSGADRTLHGIAVHANNMANAQTDGFRAELEMAES--QPVRGYGYDSRHLLN 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 L+ E G + TG ELD A+ G +F +++ TR G F++ DG+L + +G+ Sbjct: 59 PRANALNGEAGVVVDTGRELDAAINGGGYFTVDAQGSEAYTRAGNFEIDADGAL-TVNGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSG 176 PV+ PI +P+ +GE G IS +V A L VD + + +G Sbjct: 118 -PVIGEGG-PIVLPEF-TSLRIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAG 174 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + PL + V V G LE SN + + EM + L + F + + + M + Sbjct: 175 LLVARDGQPLPASNEVKVLGGHLERSNVSPVEEMIATMSLNRAFEVQMRMFNAAGE-MAD 233 Query: 237 AIRNI 241 A + Sbjct: 234 AGNRL 238 >gi|89895709|ref|YP_519196.1| hypothetical protein DSY2963 [Desulfitobacterium hafniense Y51] gi|89335157|dbj|BAE84752.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 312 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 51/311 (16%), Positives = 102/311 (32%), Gaps = 89/311 (28%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY------------L 66 + + +NMSN +T G++ +V F+E + A +++ + G+ Sbjct: 1 MDILGNNMSNVNTPGYKAQRVNFAEALAAEMRPAEREFNGQLVGERIDVGAGVIYPTIDT 60 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG------ 119 G T D A++G+ +F + + G TR G F++ G LV++ G Sbjct: 61 DYRQGIIRETENPFDLAIDGEGFFPVRTANGESRYTRVGNFELDSQGKLVNSDGYILEVK 120 Query: 120 --------------------------------------KYPV----LDMASVPI------ 131 YPV +D P+ Sbjct: 121 IPADAMDLYVDETGNITGFIDDEERVLGRVVVNDPEGEGYPVGPIDMDELGRPLDWNGDI 180 Query: 132 -----QIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQGFVRRENSGISP--- 179 +P+ E + +G I + + + + + +G VR ++ Sbjct: 181 LPTAFAVPEGAEDVQISTEGVLSATIDGSRQTLGQINIVTFANPEGLVRDGDNLYFAPDT 240 Query: 180 ---------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 P + +E+ + ++ LE SN N M +MI + + + +I N Sbjct: 241 AGVTGDELVGTPGSQVEERTLGKLRTQSLEGSNVNLASAMTEMIQVQRAYQLNARMI-TN 299 Query: 231 EKSMLEAIRNI 241 M ++ Sbjct: 300 GDQMWSMANSL 310 >gi|167905091|ref|ZP_02492296.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei NCTC 13177] Length = 241 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 11/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ ++ A+NM+N T GFR ++ + Sbjct: 1 MDALIYTIMSGADRTLHGIAVHANNMANAQTDGFRAELEMAES--QPVRGYGYDSRHLLN 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 L+ E G + TG ELD A+ G +F +++ TR G F++ DG+L + +G+ Sbjct: 59 PRANALNGEAGVVVDTGRELDAAINGGGYFTVDAQGSEAYTRAGNFEIDADGAL-TVNGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSG 176 PV+ PI +P+ +GE G IS +V A L VD + + +G Sbjct: 118 -PVIGEGG-PIVLPEF-TSLRIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAG 174 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + PL + V V G LE SN + + EM + L + F + + + M + Sbjct: 175 LLVARDGQPLPASNEVKVLGGHLERSNVSPVEEMIATMSLNRAFEVQMRMFNAAGE-MAD 233 Query: 237 AIRNI 241 A + Sbjct: 234 AGNRL 238 >gi|262173355|ref|ZP_06041032.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451] gi|261890713|gb|EEY36700.1| flagellar basal-body rod protein FlgF [Vibrio mimicus MB-451] Length = 243 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 111/250 (44%), Gaps = 20/250 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISF 58 M + + + ++N+SN DT GFR + + ++ G+ + + Sbjct: 1 MDNLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERAESFQLYGSGFD----GRTM 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSA 117 V + + G I TG LD A+ G+ + +E+P G TR G KV G++ + Sbjct: 57 VVTNSATTRFDSGDVIKTGRPLDVAIIGEGYLTVEAPQGGEAYTRAGNIKVDAFGAM-TI 115 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVR 171 +G +PVL + + +P+ + +GE+G++S + T+ L + Q ++ Sbjct: 116 NG-FPVLGESGS-MVLPEY-QKIEIGERGQVSVIPPGGGAKIEVGTLKLAKPPIDQ--LQ 170 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 +E+ + N+ P V + +E SN +++ E+ ++ LT+ F ++ Sbjct: 171 KESDSLLHNVNGEPFPVDETVQLVPEHVEGSNVSAVDELLSVMSLTRNFEMQVRMMKSA- 229 Query: 232 KSMLEAIRNI 241 +++ +A + Sbjct: 230 ETLAQAGNKL 239 >gi|321313186|ref|YP_004205473.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] gi|291486214|dbj|BAI87289.1| flagellar hook-basal body protein [Bacillus subtilis subsp. natto BEST195] gi|320019460|gb|ADV94446.1| flagellar basal body rod protein FlgG [Bacillus subtilis BSn5] Length = 269 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVA 60 Query: 61 SGK---------------EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 + L + GS T +LD A + + TRDG Sbjct: 61 KARKTPPGLRLGVGAMMNSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDG 120 Query: 105 RFKVTD------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-KGKVIAT 157 VT LV+ +G YPVLD + I + + + G ++ G + Sbjct: 121 ALYVTPSAANANQLQLVTGNG-YPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQR 179 Query: 158 --MGLYSVDMSQGFVRRENSGISPNIPPT----PLEDLSGVTVKRGFLEDSNANSMYEMG 211 +G+ V+ Q N+ S + + + +++G LE SN + +M Sbjct: 180 FNLGVVQVNNPQELKSEGNNLFSIDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMT 239 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + + I ML I ++ Sbjct: 240 DLITSQRSYQLNSRTI-TMGDQMLGLINSV 268 >gi|295096224|emb|CBK85314.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 243 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 25/251 (9%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 +G A+Q +Q + A N++N T GFR V ++ + V + Sbjct: 1 MGAASQTLNQQ--AVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVTASTPGA 56 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVLD 125 G T LD AL+ D W A+++ G TR+G +V+ G L + G +PV+ Sbjct: 57 DMTPGQMDYTARPLDVALQQDGWLAVQTADGGEGYTRNGNIQVSATGQL-TIQG-HPVMG 114 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGI 177 A P+ +P+ E + G IS + + L + ++ V+R + G+ Sbjct: 115 EAG-PLTVPEGSE-LTIAADGTISALNPGDPANTVAPVGRLKLVKAEGNE--VQRGDDGM 170 Query: 178 SP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 L+ + V G LE SN + M MI ++F +I + Sbjct: 171 FRLTQAAQATRGATLQADPTIRVMSGVLEGSNVKPVEAMTDMIASARRFEMQMKIISSVD 230 Query: 232 KSMLEAIRNIA 242 ++ +A + +A Sbjct: 231 ENAGKANQLLA 241 >gi|225569956|ref|ZP_03778981.1| hypothetical protein CLOHYLEM_06051 [Clostridium hylemonae DSM 15053] gi|225161426|gb|EEG74045.1| hypothetical protein CLOHYLEM_06051 [Clostridium hylemonae DSM 15053] Length = 250 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 96/256 (37%), Gaps = 22/256 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKF-SEVVGAIKN------ 50 M F + L +R++ +++NMSN T G++ + F E++ N Sbjct: 1 MFQGFYNLTSGVLTQTRRMNVISNNMSNVSTPGYKRDQFVCKTFKEEMIYRSGNKDKSSP 60 Query: 51 -DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + VA+ + Y G + ST + LDFA+ +F ++S G + TR+G F + Sbjct: 61 AQLGTMNRIVAADRNYTDFAAGGYESTESPLDFAIGTSGFFRIQSGNGTVYTRNGSFSLD 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVDM-S 166 ++G L G VL PI + + G + + + + Sbjct: 121 NNGYLA-LQGVGRVLGQNG-PIYL--GTDKIRADRLGNLYSEDGNNFLGRLSVVDFQNYD 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + + + T + V LE SN + EM QM+ + S + Sbjct: 177 EELTKTTGDVYTSAGQGTAVNAD----VVHKALESSNVEPVNEMTQMMAGERALQSSAQV 232 Query: 227 IDENEKSMLEAIRNIA 242 + ++ + + + + Sbjct: 233 LKMYDQIIGKVVTQLG 248 >gi|153953798|ref|YP_001394563.1| flagellar basal body rod protein FlgG [Clostridium kluyveri DSM 555] gi|219854414|ref|YP_002471536.1| hypothetical protein CKR_1071 [Clostridium kluyveri NBRC 12016] gi|146346679|gb|EDK33215.1| FlgG2 [Clostridium kluyveri DSM 555] gi|219568138|dbj|BAH06122.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 261 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 104/261 (39%), Gaps = 22/261 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + +A A +++L+++++NM+N +TVG++ V F ++V + + Sbjct: 1 MLRAIWNSASAMNAEQEKLNSISNNMANAETVGYKREVVNFQDLVYETLDRNGYPVNDEG 60 Query: 57 ------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVT 109 + V + GS TG + + A++G+ +F + G R G F V Sbjct: 61 QNTINGTGVRTTNWLRDTLQGSLQETGLKANMAIDGEGFFRVTLQNGTQGYERAGNFNVN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQ-----KDEIFNVGEKGEISQ----KGKVIATMGL 160 G LV G +++ + + ++ F V +KG+I + + + Sbjct: 121 SMGELVDPDGNRLEVNLTEEGVNLINSGVLLNNDNFTVDKKGQIYVNVDDNSVLYGKINV 180 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 Y+ + ++ P + + + +G+LE SN + E+ MI + F Sbjct: 181 YNAVGQDSMLSIGDNLYLP-AENVQVTENQDANILQGYLEQSNVDLGREITDMILAQRAF 239 Query: 221 NSITTLIDENEKSMLEAIRNI 241 + ++ M I N+ Sbjct: 240 ALGAKGLTTADE-MWGLINNM 259 >gi|170756722|ref|YP_001782271.1| flagellar hook protein flgE [Clostridium botulinum B1 str. Okra] gi|169121934|gb|ACA45770.1| flagellar hook protein flgE [Clostridium botulinum B1 str. Okra] Length = 344 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 55/341 (16%), Positives = 111/341 (32%), Gaps = 102/341 (29%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ A + +L V +N++N +T F++ ++F +++ G N Sbjct: 1 MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 V G + Y G+ +TG LD A++G +F + Sbjct: 61 GTNPRQVGLGVQVAGIYTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEST 120 Query: 97 ---------------GIILTRDGRFKVTDDGSLVSASG----KYPVLDMAS--------- 128 I TRDG F + D+G+L+++ G Y + D Sbjct: 121 GDVQAGSIDGKNSTMDISFTRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLTYAADG 180 Query: 129 -----------------------VPIQIPQK---------DEIFNVGEKG-----EISQK 151 +P++IP + + F++ + G ++ K Sbjct: 181 KATLAFVDADSKDLKAADDSKKLIPLRIPDEIDVDGKKVRVQSFSIDKDGLLVASLVNGK 240 Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-------------EDLSGVTVKRGF 198 + + + S G + + + D + G Sbjct: 241 SAALGQVAMASFKNEGGLEKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNGM 300 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN + E +MI + F + +I ++ + E + Sbjct: 301 IEMSNVDLAEEFTEMIVANRAFQACGKMITTGDEILQELVN 341 >gi|149184207|ref|ZP_01862525.1| hypothetical protein ED21_25853 [Erythrobacter sp. SD-21] gi|148831527|gb|EDL49960.1| hypothetical protein ED21_25853 [Erythrobacter sp. SD-21] Length = 261 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 32/259 (12%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL--SKE 69 + L ++ N++N++T GF+ + +FSE+V + I + + + + + Sbjct: 1 MKNAQTSLGVISHNIANSETYGFKRSRTEFSEIVAGSALTNPRMIQGIGASVKSITQNFA 60 Query: 70 VGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSASGK----YPV 123 +G TG+ LD A+ GD +F S + TR G F ++ G++V +SG +PV Sbjct: 61 LGPIEQTGSALDLAITGDGFFTTRSAADGSTLYTRSGSFSLSGTGNIVDSSGNRLQLFPV 120 Query: 124 ----------LDMASVPIQIPQKDE--IFNVGEKGEISQKG-----KVIATMGLYSVDMS 166 L A++P Q E + E G +S + + + L + Sbjct: 121 DANGQVTGNTLGDANLPPQNLAGSEFVGVTINEVGVVSASYADGSVEPVGAIALATFIAP 180 Query: 167 QGFVR------RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 G + +P G ++ G LE SN + E+ +I + F Sbjct: 181 TGLKKVGDANWEGTGLSGAATYGSPGTGAYG-SLLSGALERSNVDIAEELVGLITAQRNF 239 Query: 221 NSITTLIDENEKSMLEAIR 239 + ID + I Sbjct: 240 QANAKAIDTATQISQTVIN 258 >gi|168705106|ref|ZP_02737383.1| flagellar basal-body rod protein FlgG [Gemmata obscuriglobus UQM 2246] Length = 261 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 32/258 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV--A 60 ++ + A L ++N++N+DT G++T ++ F + + + + + V Sbjct: 4 SAITSSASGIRAASTYLDVTSNNIANSDTPGYKTGQITFQDQLYRAADPVGAPTTGVTPP 63 Query: 61 SGKEYLS----------KEVG-SFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKV 108 SG + S G + STG D A++G+ +F + P G TR G F Sbjct: 64 SGTQIGSGVVVDAITGKFTQGAALESTGR-FDLAIQGEGFFQVILPDGSTGYTRAGNFVT 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSV 163 + G LV+ G V D + +P V G ++ +VI + L Sbjct: 123 DNTGQLVTPQGYRLVSD-----LIVPANTSSITVAPDGTVTAALDNGTAQVIGQVTLTRF 177 Query: 164 DMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 G R ++ I P + G +V+ G LE SN E+ +I Sbjct: 178 VNPGGLSRSGDNVYTATPAAGDAINGAPNTNGIG-SVESGRLEQSNVELANELVNLIVAQ 236 Query: 218 QKFNSITTLIDENEKSML 235 Q F T + + + Sbjct: 237 QAFRFNTQALQLESQVLQ 254 >gi|226950067|ref|YP_002805158.1| flagellar hook protein FlgE [Clostridium botulinum A2 str. Kyoto] gi|226841875|gb|ACO84541.1| flagellar hook protein FlgE [Clostridium botulinum A2 str. Kyoto] Length = 334 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 109/331 (32%), Gaps = 92/331 (27%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ A + RL V +N++N +T F++ ++F +++ G N Sbjct: 1 MLRSMYSGISGLKAQQTRLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFAL---------------- 92 V G + + G+ +TG LD A++G +F + Sbjct: 61 GTNPRQVGLGVQVAGIFTKFTTGNMQTTGRNLDMAIDGPGFFIVGKGKFSDTTTISTSGD 120 Query: 93 ---ESPRGII---LTRDGRFKVTDDGSLVSASGKYPVL---------------------- 124 G + T+DG F + +DGSL+++ G + Sbjct: 121 NEGAINGGTMEVSFTKDGSFNLDEDGSLITSDGLRIMGYAIESADITKDATTGKIKVGFK 180 Query: 125 ---------DMASVPIQIPQK---------DEIFNVGEKGEISQ-----KGKVIATMGLY 161 VP+ IP + + F + + G I + + + Sbjct: 181 NADEDPKAVTDKLVPLAIPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMA 240 Query: 162 SVDMSQGFVRRE--------NSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMY 208 S G + NSG + + + + G +E SN + Sbjct: 241 SFKNEGGLEKMGKNLYRNSANSGEAIIRSGRGTDADKDNSKGYGDMLNGMIEMSNVDLAE 300 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +MI + F + +I ++ + E + Sbjct: 301 EFTEMIVANRAFQACGKMITTGDEILQELVN 331 >gi|260779346|ref|ZP_05888238.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC BAA-450] gi|260605510|gb|EEX31805.1| flagellar basal-body rod protein FlgF [Vibrio coralliilyticus ATCC BAA-450] Length = 243 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 108/250 (43%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + S V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVSSV--QLQGSGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ + +++ G TR G KV G+L S +G Sbjct: 59 TNSASTRFDEGDIVKTGRALDVAVMGEGYLTVQTADGQEAYTRAGNIKVDPFGAL-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 + V+ P+ +P + + E+G IS + T+ L + +Q +++E Sbjct: 118 -FAVIGEGG-PLVLPDY-QKVEISERGRISVVPPGGGAELEVGTLKLVKPETNQ--LQKE 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + ++ P E V + +E SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDSLLHSVDGNPFEVDQTVQLAPEHIEGSNVSAIDELLNVMSLTRNFEMQVRMMKTA-ET 231 Query: 234 MLEAIRNIAS 243 + +A + S Sbjct: 232 LAQAGNKLMS 241 >gi|149184208|ref|ZP_01862526.1| Flagellar basal-body rod FlgF [Erythrobacter sp. SD-21] gi|148831528|gb|EDL49961.1| Flagellar basal-body rod FlgF [Erythrobacter sp. SD-21] Length = 246 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 98/251 (39%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ A +A NM+N +T+GFR + V I+ ++ + Sbjct: 1 MDRLIHTALSGMRASMDSQRVIASNMANANTLGFRAELLDQRPV--TIEGQPNEARAMQI 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + G I TG LD A+ A A+++ G TR G V+ G LV+ G Sbjct: 59 ARVRGADMSSGQIIETGRNLDVAVTTQALMAVQAEDGTEAYTRRGDLSVSSTGLLVNGEG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVR 171 + PVL PI IP I + G I+ Q I + + S + S + Sbjct: 119 R-PVLGETG-PITIPP-VGIPAISPDGTITIADPTTPDQPPAKIGRIKMASWEGSP--IS 173 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN- 230 + G+ L ++K G LE SN + + +MI + F T ++ Sbjct: 174 KTLDGLFRVEGGGILPTDETASLKTGALEQSNVKTTEVLVEMIEAQRLFAMRTKIVSTAK 233 Query: 231 --EKSMLEAIR 239 ++S + +R Sbjct: 234 EIDESGSQLLR 244 >gi|170758711|ref|YP_001787975.1| flagellar hook protein flgE [Clostridium botulinum A3 str. Loch Maree] gi|169405700|gb|ACA54111.1| flagellar hook protein flgE [Clostridium botulinum A3 str. Loch Maree] Length = 345 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 112/342 (32%), Gaps = 103/342 (30%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ A + +L V +N++N +T F++ ++F +++ G N Sbjct: 1 MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 V G + Y G+ +TG LD A++G +F + Sbjct: 61 GTNPRQVGLGVQVAGIYTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEAT 120 Query: 97 ---------------GIILTRDGRFKVTDDGSLVSASG----KYPVLDMAS--------- 128 I TRDG F + D+G+L+++ G Y + D + Sbjct: 121 GDVQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRIMGYAMTDGSGTSLAYDAGT 180 Query: 129 ------------------------VPIQIPQK---------DEIFNVGEKGE-----ISQ 150 +P++IP + + F++ + G ++ Sbjct: 181 GEAKMAFVDADSKALKAADDSKKLIPLRIPDEIDVDGKKVRVQSFSIDKDGLLVASLVNG 240 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-------------EDLSGVTVKRG 197 K + + + S G + + + D + G Sbjct: 241 KSAALGQVAMASFKNEGGLEKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNG 300 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN + E +MI + F + +I ++ + E + Sbjct: 301 MIEMSNVDLAEEFTEMIVANRAFQACGKMITTGDEILQELVN 342 >gi|157694040|ref|YP_001488502.1| flagellar basal-body rod protein [Bacillus pumilus SAFR-032] gi|157682798|gb|ABV63942.1| flagellar basal-body rod protein [Bacillus pumilus SAFR-032] Length = 279 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 102/280 (36%), Gaps = 42/280 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDI----- 52 M +A +A E+R +++N++N +T G++ + F E++ + Sbjct: 1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEGTMRAFPEMLLSRMESGRFQTS 60 Query: 53 ---------DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDA----------- 88 I + +G G+ +T D AL + Sbjct: 61 SGKGFSVPQQTPIGGINTGTYMQELIPQFTQGTLKTTDQTTDVALVENNVPINPETNQKS 120 Query: 89 --WFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 ++A+ +P G+ T+ + L + +G+ +L + PI + + E F V G Sbjct: 121 ALFYAVNTPEGVRYTKSSSITLNAQNQL-TINGR-ALLSVTGEPITV--QSENFKVNADG 176 Query: 147 EISQKGKVIATMGLYSVDMSQGFVRRENSGISPN----IPPTPLEDLSGVTVKRGFLEDS 202 +S+ G+ + + + ++ R N +P T+ +G E S Sbjct: 177 TVSENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNGQMSYTLSQGVSELS 236 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + +M + F + ++ +KS+ +A+ I Sbjct: 237 NVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIG 276 >gi|237796094|ref|YP_002863646.1| flagellar hook protein FlgE [Clostridium botulinum Ba4 str. 657] gi|229263494|gb|ACQ54527.1| flagellar hook protein FlgE [Clostridium botulinum Ba4 str. 657] Length = 332 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 106/329 (32%), Gaps = 90/329 (27%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ A + +L V +N++N +T F++ ++F +++ + + Sbjct: 1 MLRSMYSGISGLKAQQTKLDVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL------------ESPR 96 V Y G+ +TG LD A++G +F + ++ Sbjct: 61 GTNPRQIGLGVQVAGMYTKFTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGDTGD 120 Query: 97 G----------IILTRDGRFKVTDDGSLVSASGKYPV----------------------- 123 + TRDG F + DGSL+++ G + Sbjct: 121 NAGAITGGSMEVSFTRDGSFTLGKDGSLITSDGLRVMGYAIEGADITVDAGKMKVGFKNA 180 Query: 124 ------LDMASVPIQIPQK---------DEIFNVGEKGEISQ-----KGKVIATMGLYSV 163 + VP+ IP + + F + + G I + + + S Sbjct: 181 DEDPKAITDKLVPLAIPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASF 240 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTV-------------KRGFLEDSNANSMYEM 210 G + + + SG V G +E SN + E Sbjct: 241 KNEGGLEKMGKNLYKNSANSGEAIIRSGRGVDAANDNSKGYGDMLNGMIEMSNVDLAEEF 300 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + F + +I ++ + E + Sbjct: 301 TEMIVANRAFQACGKMITTGDEILQELVN 329 >gi|239828562|ref|YP_002951186.1| hypothetical protein GWCH70_3280 [Geobacillus sp. WCH70] gi|239808855|gb|ACS25920.1| protein of unknown function DUF1078 domain protein [Geobacillus sp. WCH70] Length = 283 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 43/284 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISF 58 M S L Q+L +++N++N++T GF+ + F E++ ++ D+ Sbjct: 1 MLRSMITAANTMAQLGQQLDVISNNIANSNTTGFKRRETNFGELLAQQFTNLPNDKATRL 60 Query: 59 VASGKEY----------LSKEVGSFISTGTELDFALEGDAWF---ALESPRG---IILTR 102 +G Y L G+ T LD AL + F ++ G I TR Sbjct: 61 TPNGVRYGVGARLAETNLVLAQGALTKTDRALDVALAKEGQFFRVLVQGENGAQEIGYTR 120 Query: 103 DGRFKVTD------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGK 153 G F +T + LV++ G +PVLD + PI +P+ + + G I+ G+ Sbjct: 121 SGAFYLTPSAENPNELMLVTSDG-HPVLDENNAPILLPEGFKNITISNNGTITAVASDGR 179 Query: 154 VI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV------------KRGFL 199 V+ A +G+ ++ Q ++ + + + V V +G L Sbjct: 180 VMRRANIGITTILRPQLLQSVGDNIFTLPDLNALNVNETDVAVNMTGNLRNQISMTQGAL 239 Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E SN + E+ M+ + + I +++ ML I I S Sbjct: 240 EQSNVDLGAELTDMMITERSYQLNARAISLSDQ-MLGLINGIRS 282 >gi|148380612|ref|YP_001255153.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC 3502] gi|153934204|ref|YP_001384898.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC 19397] gi|153936013|ref|YP_001388367.1| flagellar hook protein flgE [Clostridium botulinum A str. Hall] gi|148290096|emb|CAL84215.1| flagellar hook protein [Clostridium botulinum A str. ATCC 3502] gi|152930248|gb|ABS35748.1| flagellar hook protein flgE [Clostridium botulinum A str. ATCC 19397] gi|152931927|gb|ABS37426.1| flagellar hook protein flgE [Clostridium botulinum A str. Hall] Length = 345 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 112/342 (32%), Gaps = 103/342 (30%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ A + +L V +N++N +T F++ ++F +++ G N Sbjct: 1 MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 V G + + G+ +TG LD A++G +F + Sbjct: 61 GTNPRQVGLGVQVAGIFTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEGT 120 Query: 97 ---------------GIILTRDGRFKVTDDGSLVSASG----KYPVLDMAS--------- 128 I TRDG F + D+G+L+++ G Y + D Sbjct: 121 DDAQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYDAGT 180 Query: 129 ------------------------VPIQIPQKDEI---------FNVGEKGE-----ISQ 150 +P++IP + E+ F++ + G ++ Sbjct: 181 GEAKMAFVDADSKALKAADDSKKLIPLRIPDEIEVEGKKVRVQSFSIDKDGLLVASLVNG 240 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-------------EDLSGVTVKRG 197 K + + + S G + + + D + G Sbjct: 241 KSAALGQVAMASFKNEGGLEKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNG 300 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN + E +MI + F + +I ++ + E + Sbjct: 301 MIEMSNVDLAEEFTEMIVANRAFQACGKMITTGDEILQELVN 342 >gi|153940920|ref|YP_001391955.1| flagellar hook protein flgE [Clostridium botulinum F str. Langeland] gi|152936816|gb|ABS42314.1| flagellar hook protein flgE [Clostridium botulinum F str. Langeland] gi|295319974|gb|ADG00352.1| flagellar hook protein flgE [Clostridium botulinum F str. 230613] Length = 345 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 111/342 (32%), Gaps = 103/342 (30%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ A + +L V +N++N +T F++ ++F +++ G N Sbjct: 1 MLRSMYSGISGLKAQQTKLDIVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPR------------ 96 V G + Y G+ +TG LD A++G +F + Sbjct: 61 GTNPRQVGLGVQVAGIYTKFTTGNMQTTGRNLDMAVDGPGFFIVGKGDITSQTSIITEAT 120 Query: 97 ---------------GIILTRDGRFKVTDDGSLVSASG----KYPVLDMAS--------- 128 I TRDG F + D+G+L+++ G Y + D Sbjct: 121 GDAQAGSIDGKSSTMDISFTRDGSFTLDDEGNLLTSDGFRIMGYAMTDGTGTSLAYDAGT 180 Query: 129 ------------------------VPIQIPQK---------DEIFNVGEKGE-----ISQ 150 +P++IP + + F++ + G ++ Sbjct: 181 GEAKMAFVDADSKALKAADDSKKLIPLRIPDEIDVDGKKVRVQSFSIDKDGLLVASLVNG 240 Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-------------EDLSGVTVKRG 197 K + + + S G + + + D + G Sbjct: 241 KSAALGQVAMASFKNEGGLEKMGKNLYKNSANSGEAIIRTPRGTAEENRNDKGYGDMLNG 300 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN + E +MI + F + +I ++ + E + Sbjct: 301 MIEMSNVDLAEEFTEMIVANRAFQACGKMITTGDEILQELVN 342 >gi|269960117|ref|ZP_06174493.1| Flagellar basal-body rod protein flgF [Vibrio harveyi 1DA3] gi|269835088|gb|EEZ89171.1| Flagellar basal-body rod protein flgF [Vibrio harveyi 1DA3] Length = 243 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 104/246 (42%), Gaps = 12/246 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--ELQGAGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ + +E+P G TR G KV G++ S +G Sbjct: 59 TNSAATRFDSGDIMKTGRPLDVAIMGEGYLTVETPIGNEAYTRAGNIKVDTFGAM-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENS 175 +PV+ PI +P + + E+G +S G + L V +++E+ Sbjct: 118 -FPVVGENG-PIVVP-DFQKIEISERGRVSVIPPGGGAEVEVGTLKMVKPPINQLQKESD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + ++ P V + +E SN +++ E+ ++ LT+ F ++ +++ Sbjct: 175 SLLHSVDGVPFPADETVQLSPEHIEGSNVSAIDELLSVMSLTRNFEMQVRMMKTA-ETLA 233 Query: 236 EAIRNI 241 +A + Sbjct: 234 QAGNKL 239 >gi|225377359|ref|ZP_03754580.1| hypothetical protein ROSEINA2194_03007 [Roseburia inulinivorans DSM 16841] gi|225210784|gb|EEG93138.1| hypothetical protein ROSEINA2194_03007 [Roseburia inulinivorans DSM 16841] Length = 196 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 88/196 (44%), Gaps = 14/196 (7%) Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRDGRFKVTDDG 112 V G+ Y + + GS T E D AL G+ +FA+ + TRDG F V +G Sbjct: 2 GVHLGETYTNYDQGSIKVTDNETDVALAGNGFFAIAFTNKAGETSVKYTRDGAFTVNTEG 61 Query: 113 SLVSASGKYPVLDMA------SVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 LV+ G Y + + I++ + + E G I Q +++ +G+ D Sbjct: 62 YLVTKDGDYVLNQAGAQNTDPNARIRLNPNAK-ITIDELGNIYQNDQLVTRIGVVDFDD- 119 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 ++ + + + + S V++G +E SN N + EM +MI +++ + + + Sbjct: 120 YNYISKYGENLYDLVDGGQITA-SDAKVQQGCIEGSNVNVVDEMVKMITISRAYQAGQKV 178 Query: 227 IDENEKSMLEAIRNIA 242 I+ ++++ + + + Sbjct: 179 INTVDETLDKTVNQVG 194 >gi|218507129|ref|ZP_03505007.1| flagellar basal body rod protein FlgG [Rhizobium etli Brasil 5] Length = 217 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 19/176 (10%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G TG +LD AL G +F ++S G + TR G F D G LV+ G Y VL Sbjct: 39 GRLTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVTVDG-YEVLPG--- 94 Query: 130 PIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGF------VRRENSGI 177 I IP + GE+S V+ + L G + +E + Sbjct: 95 -ITIPTGSTELTISRSGEVSVKLPGATDTTVLGQLTLADFVNEAGLQPIGDNLFQETAAS 153 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + P E+ +K+G+LE SN + + E+ ++I + + + +I ++ Sbjct: 154 GEAVVGNPDEEGF-AYMKQGYLESSNVDPVKEITELISAQRAYEMNSKVITTADEM 208 >gi|168182737|ref|ZP_02617401.1| flagellar hook protein FlgE [Clostridium botulinum Bf] gi|182674150|gb|EDT86111.1| flagellar hook protein FlgE [Clostridium botulinum Bf] Length = 332 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 106/329 (32%), Gaps = 90/329 (27%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ A + +L V +N++N +T F++ ++F +++ + + Sbjct: 1 MLRSMYSGISGLKAQQTKLDVVGNNIANANTTAFKSQSIRFQDMLSQNMSSATGPSANLG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL------------ESPR 96 V Y G+ +TG LD A++G +F + ++ Sbjct: 61 GTNPRQIGLGVQVAGMYTKFTTGNMQTTGRNLDSAIDGPGFFVVGKGKISDTTTIGDTGD 120 Query: 97 G----------IILTRDGRFKVTDDGSLVSASG----KYPVLDMA--------------- 127 + TRDG F + DGSL+++ G Y + Sbjct: 121 NAGAITGGSMEVSFTRDGSFTLGKDGSLITSDGLRVMGYAIEGADITVDAGKMKVGFKNA 180 Query: 128 ----------SVPIQIPQK---------DEIFNVGEKGEISQ-----KGKVIATMGLYSV 163 VP+ IP + + F + + G I + + + S Sbjct: 181 DEDPKAVTDKLVPLAIPDEIEKGSEKVRVQSFTIDKDGLIVASLVDGTSAALGQIAMASF 240 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTV-------------KRGFLEDSNANSMYEM 210 G + + + SG V G +E SN + E Sbjct: 241 KNEGGLEKMGKNLYKNSANSGEAIIRSGRGVDAANDNSKGYGDMLNGMIEMSNVDLAEEF 300 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + F + +I ++ + E + Sbjct: 301 TEMIVANRAFQACGKMITTGDEILQELVN 329 >gi|328958264|ref|YP_004375650.1| putative flagellar basal-body rod protein [Carnobacterium sp. 17-4] gi|328674588|gb|AEB30634.1| putative flagellar basal-body rod protein [Carnobacterium sp. 17-4] Length = 252 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 113/258 (43%), Gaps = 24/258 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK----VKFSEVVGA--------I 48 M S L+++ ++ N++N +T G+++ + + SEV+ Sbjct: 1 MIRSLTTLNNNFNILQKKQENISANVANINTSGYKSQEIIQSTRASEVMSNHLDGPFLNQ 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 + DI + + G +T + D A++GD +F +E+P G TR+G F Sbjct: 61 QQDIGDFTFGNQIDEIAQNFSQGGLKATASPTDIAIQGDGFFTVEAPNGGNYYTRNGNFA 120 Query: 108 VTDDGSLVSASGKYPVLDMASV---PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V D G LV+ G + A PIQ+ F++ +G IS G ++ + + Sbjct: 121 VNDTGELVTQEGYRVLGTTAGGQSSPIQV--NGTEFSIDNRGNISGTGM---SLMVTEFE 175 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + G R ++ + + G +++ +LE SN ++ E+ ++ ++++F + Sbjct: 176 DTAGLTRTGDTLFTGQGGTVQI---GGTVMQQSYLEASNVQTVDEITNLMQVSREFEANQ 232 Query: 225 TLIDENEKSMLEAIRNIA 242 + ++++ +A+ + Sbjct: 233 KALSAADETLRKAVNEVG 250 >gi|312112590|ref|YP_003990906.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] gi|311217691|gb|ADP76295.1| fagellar hook-basal body protein [Geobacillus sp. Y4.1MC1] Length = 285 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 110/283 (38%), Gaps = 43/283 (15%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 S L+Q+L +++N++N++T GF+ + F E++ ++ Q Sbjct: 4 LRSMITAANTMAQLQQQLDVISNNIANSNTAGFKRRETSFGELLAQQFTNLPQDEAPRLT 63 Query: 56 ------ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-WFAL--ESPRGII---LTRD 103 + + + G+ + T LD AL + +F + + G TR Sbjct: 64 PNGLRYGVGARLAETNIVLKQGAIMQTDRPLDVALTKEGQFFRVLIQGENGTQEIGYTRA 123 Query: 104 GRFKVTDDG------SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKV 154 G F +T LV++ G PVLD + PI +P + + + G I+ G++ Sbjct: 124 GAFYLTPSAGNQNVLMLVTSDGN-PVLDENNAPIWLPNGYKDIEISDNGTITATAPDGRI 182 Query: 155 IAT--MGLYSVDMSQGFVRREN--------SGISPNIPPTPLEDLSGVT----VKRGFLE 200 + +G+ S+ Q N + ++ N + + + +G LE Sbjct: 183 MRRVNIGVTSILRPQLLQSAGNNIWTLPDFNALNVNAADVAVNMTGNLRAQIGMTQGALE 242 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 SN + E+ M+ + + I +++ ML I I S Sbjct: 243 QSNVDLGTELTDMMITERSYQLNARSISISDQ-MLGLINGIRS 284 >gi|188589304|ref|YP_001920228.1| flagellar basal body rod protein FlgG [Clostridium botulinum E3 str. Alaska E43] gi|188499585|gb|ACD52721.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E3 str. Alaska E43] Length = 256 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 105/247 (42%), Gaps = 16/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M F + A +++L +++++ NT T G+++ V+FS+++ + + Sbjct: 1 MFNIFANAQSGMNAYQEKLDYLSNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKD 60 Query: 57 ----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 + V G +Y G+ ++TG + D A++G +FA G TRDG K+ + Sbjct: 61 AINGTGVKLGMDYRKDTQGNLLTTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSN 120 Query: 112 GSLVSASGK--YPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV--IATMGLYSVDM 165 G+LV A G Y + E ++ +G IS G+ + + +++ Sbjct: 121 GTLVDARGNKIYIQYEGGMSEGNPKLSSEDISIDGEGGISTKVDGQYVKVGQIPVFTAVG 180 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + F+ N+ + + + +++G LE SN ++ +I + F + Sbjct: 181 DKAFIAIGNNYFVASDDAQ-IALSNDYNIEQGMLEGSNVDTAEIFTDIISTQRAFQLSSK 239 Query: 226 LIDENEK 232 I ++ Sbjct: 240 GITTADE 246 >gi|253682640|ref|ZP_04863437.1| flagellar basal-body rod protein FlgG [Clostridium botulinum D str. 1873] gi|253562352|gb|EES91804.1| flagellar basal-body rod protein FlgG [Clostridium botulinum D str. 1873] Length = 333 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 60/335 (17%), Positives = 108/335 (32%), Gaps = 101/335 (30%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ + +L +N++N T F+ +V+F +++ G KN Sbjct: 1 MLRSMYAGISGMKVNQTKLDVTGNNIANVSTTAFKGSRVRFQDMLSQNVQEAVGPGKNLG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFAL--------------ES 94 V G G T LD A++G + + E Sbjct: 61 GVNGRQVGLGVSVAGIDTVVSQGMLQPTSRNLDVAIDGTGYLVVAKGKLGESSADTGIEL 120 Query: 95 PRGII---------LTRDGRFKVTDDGSLVSASGKYPVLDMA------------------ 127 G I TRDG F + +G+L+++ G Y V+ A Sbjct: 121 NDGNINENSNFQINYTRDGAFALDYEGNLLTSEG-YRVMGYAIEGADIDYKKDGIVKFKN 179 Query: 128 -------------SVPIQIPQ-------------------KDEIFNVGEKGEISQKGKVI 155 VP++IP+ I V + G I+ G+ Sbjct: 180 VDGDDELKAKIDRLVPLKIPELVGEDKDNGKKMRSFSIEKNGLIKGVLDDGTITALGQ-- 237 Query: 156 ATMGLYSVDMSQGFVRRE--------NSGISPNIPPTPLEDLSGVT---VKRGFLEDSNA 204 + + S +G + NSG + + + + +G LE SN Sbjct: 238 --IAMTSFKNPEGLKKEGKNMYSNTPNSGKPVFRSGIGADKDNSESYGDMIQGMLEMSNV 295 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + MI T+ F + +I ++ + + I Sbjct: 296 DLAEQFTDMIVTTRAFQASGKMISTGDEILQDIIN 330 >gi|213421404|ref|ZP_03354470.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 197 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 25/200 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGL 160 +V +G LV+A G + V I IP +G G +S + + + L Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNL 175 Query: 161 YSVDMSQGFVRRENSGISPN 180 + G + Sbjct: 176 TTFMNDTGLESIGENLYIET 195 >gi|167770196|ref|ZP_02442249.1| hypothetical protein ANACOL_01539 [Anaerotruncus colihominis DSM 17241] gi|167667518|gb|EDS11648.1| hypothetical protein ANACOL_01539 [Anaerotruncus colihominis DSM 17241] Length = 254 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 20/258 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSE-----VVGAIKNDI 52 M F + L E+ L+ + +N+ N T GFR +V F + + I Sbjct: 1 MLRGFYTAASGVLMQERTLNVLTNNLVNARTPGFRASRVVSTTFEDEYLVRLEKGASGAI 60 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-----ESPRGIILTRDGRFK 107 + S TG D A+ G+ +F + + LTR+G F Sbjct: 61 GTGAPVRIVSDVPTLFDPSSLEETGRPYDLAINGEGFFNILTTDAQGNERQYLTRNGNFD 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-QKGKVIATMGLYSVDMS 166 V ++G LV G VL PIQ+ F V G+I +KGK++ + L +V Sbjct: 121 VDEEGMLV-LRGHGQVLGEKG-PIQL--DTANFTVDYNGDIYNEKGKLVDKV-LVTVPPQ 175 Query: 167 QGFVRRENSGISPNIPPTP-LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + + +G+ T + V + +G+ E SN + EM ++ + F + ++ Sbjct: 176 DAELEVDANGMYTAQDMTANTQVGDNVMIVQGWTERSNIDPNREMALVMEAQRTFQACSS 235 Query: 226 LIDENEKSMLEAIRNIAS 243 + +K ++ IA+ Sbjct: 236 ALQILDKINQKSATQIAA 253 >gi|295400718|ref|ZP_06810695.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977299|gb|EFG52900.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] Length = 285 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 110/283 (38%), Gaps = 43/283 (15%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK------ 55 S L+Q+L +++N++N++T GF+ + F E++ ++ Q Sbjct: 4 LRSMITAANTMAQLQQQLDVISNNIANSNTAGFKRRETSFGELLAQQFANLPQDEAPRLT 63 Query: 56 ------ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-WFAL--ESPRGII---LTRD 103 + + + G+ + T LD AL + +F + + G TR Sbjct: 64 PNGLRYGVGARLAETNIVLKQGAIMQTDRPLDVALTKEGQFFRVLIQGENGTQEIGYTRA 123 Query: 104 GRFKVTDDG------SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKV 154 G F +T LV++ G PVLD + PI +P + + + G I+ G++ Sbjct: 124 GAFYLTPSAGNQNVLMLVTSDGN-PVLDENNAPIWLPNGYKDIEISDNGTITATAPDGRI 182 Query: 155 IAT--MGLYSVDMSQGFVRREN--------SGISPNIPPTPLEDLSGVT----VKRGFLE 200 + +G+ S+ Q N + ++ N + + + +G LE Sbjct: 183 MRRVNIGVTSILRPQLLQSAGNNIWTLPDFNALNVNAADVAVNMTGNLRAQIGMTQGALE 242 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 SN + E+ M+ + + I +++ ML I I S Sbjct: 243 QSNVDLGTELTDMMITERSYQLNARSISISDQ-MLGLINGIRS 284 >gi|296331269|ref|ZP_06873741.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676256|ref|YP_003867928.1| putative flagellar hook-basal body protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151384|gb|EFG92261.1| flagellar basal body rod protein FlgG [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414500|gb|ADM39619.1| putative flagellar hook-basal body protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 269 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 103/270 (38%), Gaps = 31/270 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVA 60 Query: 61 SGK---------------EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 + L + GS T +LD A + + TRDG Sbjct: 61 KARKTPPGLRLGVGAMMNSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDG 120 Query: 105 RFKVTD------DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-KGKVIAT 157 +T LV+ +G PVLD + I + + + G ++ G + Sbjct: 121 ALYLTPSVANANQLQLVTGNGN-PVLDENGNTVNIDSSMKNITINKNGTLTASDGSAVQR 179 Query: 158 --MGLYSVDMSQGFVRRENSGISPNIPPT----PLEDLSGVTVKRGFLEDSNANSMYEMG 211 +G+ V+ Q N+ S + + + +++G LE SN + +M Sbjct: 180 FNLGVVQVNNPQELKSEGNNLFSIDNAAAFEQLNGANRQNIGIEQGSLEMSNVDISEQMT 239 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +I + + + I ML I ++ Sbjct: 240 DLITSQRSYQLNSRTI-TMGDQMLGLINSV 268 >gi|194016593|ref|ZP_03055207.1| flagellar hook-basal body complex protein FlhO [Bacillus pumilus ATCC 7061] gi|194012066|gb|EDW21634.1| flagellar hook-basal body complex protein FlhO [Bacillus pumilus ATCC 7061] Length = 279 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 102/280 (36%), Gaps = 42/280 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK---VKFSEVVGAIKNDI----- 52 M +A +A E+R +++N++N +T G++ + F E++ + Sbjct: 1 MLKGLYTATSAMIAQERRTEMLSNNIANANTPGYKADEGTMRAFPEMLLSRMESGRFQTS 60 Query: 53 ---------DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDA----------- 88 I + +G G+ +T D AL + Sbjct: 61 SGKGFSVPQQTPIGGINTGTYMQELIPQFTQGTLKTTDQTTDVALVENNVPINPETNQKS 120 Query: 89 --WFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 ++A+ +P G+ T+ + L + +G+ +L + PI + + E F V G Sbjct: 121 ALFYAVNTPEGVRYTKSSSITMNAQNQL-TINGR-ALLSVTGQPITV--QSENFKVNADG 176 Query: 147 EISQKGKVIATMGLYSVDMSQGFVRRENSGISPN----IPPTPLEDLSGVTVKRGFLEDS 202 +S+ G+ + + + ++ R N +P T+ +G E S Sbjct: 177 TVSENGQNLGQIDVRVAMDTRNLAREGNDLYRTADNQPLPSAVNNGQMSYTLSQGVSELS 236 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + +M + F + ++ +KS+ +A+ I Sbjct: 237 NVDVTKSYTEMTTAYRAFETNQKVVQAYDKSLEKAVNEIG 276 >gi|258512706|ref|YP_003186140.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479432|gb|ACV59751.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 262 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 87/252 (34%), Gaps = 19/252 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------G 46 M GL+ A + +ADN++N T G+ + F++++ Sbjct: 1 MGQMMWNGLSGIQAANAWMDQIADNLANLQTPGYAAEQGTFADLLTMQVYGNATDPSSAA 60 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + + + V E + + TG A+EG +F +++P G + TR G F Sbjct: 61 RVTPPGWRGGTGVVRTGEERDFSQAAVVRTGIPTHLAIEGPGFFVVQTPSGRMYTRAGNF 120 Query: 107 ----KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 + L + +G PVL A PI P V G + A + L Sbjct: 121 IWSRRSDGSFVLATQTGD-PVLSAAGQPIVKPADAPSMTVAPDGTVQFGRGRTAKLALVE 179 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + E +G+ +V +G + SN + M Q++ + Sbjct: 180 IGEPSSHLIPEGNGLYRLASGGVAVPARNSSVIQGAVNASNVDETAAMAQLVAAQDFYEE 239 Query: 223 ITTLIDENEKSM 234 I + + Sbjct: 240 NAQAISMANQLL 251 >gi|251778946|ref|ZP_04821866.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083261|gb|EES49151.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 256 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 105/247 (42%), Gaps = 16/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M F + A +++L +++++ NT T G+++ V+FS+++ + + Sbjct: 1 MFNIFANAQSGMSAYQEKLDYLSNDLVNTSTTGYKSTDVQFSDLLTESLDRKGTPLVNKD 60 Query: 57 ----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 + V G +Y G+ ++TG + D A++G +FA G TRDG K+ + Sbjct: 61 AINGTGVKLGMDYRKDTQGNLLTTGVKTDIAIDGKGYFASAQNDGTIAYTRDGNLKIDSN 120 Query: 112 GSLVSASGK--YPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKV--IATMGLYSVDM 165 G+LV A G Y + E ++ +G IS G+ + + +++ Sbjct: 121 GTLVDARGNKIYIQYEGGMSEGNPKLSSEDISIDGEGGISTKVDGQYVKVGQIPVFTAVG 180 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + F+ N+ + + + +++G LE SN ++ +I + F + Sbjct: 181 DKAFIAIGNNYFVASDDAQ-IALSNDYNIEQGMLEGSNVDTSEIFTDIISTQRAFQLSSK 239 Query: 226 LIDENEK 232 I ++ Sbjct: 240 GITTADE 246 >gi|323175233|gb|EFZ60846.1| flagellar basal-body rod protein flgG domain protein [Escherichia coli LT-68] Length = 202 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 19/185 (10%) Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G+ T D A++G +F + P G TRDG F+V +G LV+A G + V Sbjct: 23 HSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSFQVDQNGQLVTA-GGFQVQPA 81 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGF------VRREN 174 I IP +G G +S + + + L + G + E Sbjct: 82 ----ITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTET 137 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 TP + +G+ + +G++E SN N E+ MI + + + + + ++ + Sbjct: 138 QSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQML 196 Query: 235 LEAIR 239 + + Sbjct: 197 QKLTQ 201 >gi|294853175|ref|ZP_06793847.1| flagellar basal-body rod protein FlgG [Brucella sp. NVSL 07-0026] gi|294818830|gb|EFG35830.1| flagellar basal-body rod protein FlgG [Brucella sp. NVSL 07-0026] Length = 210 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 19/197 (9%) Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 V + GSF TG D AL G WF ++SP G + TR G F DG LV+ Sbjct: 19 GVQTAAVRNLHIQGSFNQTGNPYDVALTGRGWFQIQSPTGETLYTRAGAFNKNADGQLVT 78 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV------IATMGLYSVDMSQGF- 169 G PV I IP + + G++ K + + + L + G Sbjct: 79 LDGN-PVEPA----ITIPPDAIEVTITDTGQVFAKLQDQINQVDLGQLTLANFTNEAGLE 133 Query: 170 -----VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + RE + P + G ++K+G+LE SN + + E+ +I + + + Sbjct: 134 PLGGNLYRETEASGGPLVGVPGDPGYG-SIKQGYLEASNVDPVKEITDLITAQRAYEMNS 192 Query: 225 TLIDENEKSMLEAIRNI 241 +I ++ +N+ Sbjct: 193 KVIQAADEMAATVSKNL 209 >gi|119503645|ref|ZP_01625728.1| hypothetical protein MGP2080_03860 [marine gamma proteobacterium HTCC2080] gi|119460707|gb|EAW41799.1| hypothetical protein MGP2080_03860 [marine gamma proteobacterium HTCC2080] Length = 244 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 18/241 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--DIDQKISF 58 M N+ + ++Q + V N++N+ T GF+ ++ A + + Sbjct: 1 MSNIANLAAQSAREIQQAQAVVTHNLANSGTTGFKA------DLYQAQSSYLNAADGTGT 54 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 S L G+ TG +LD A+ GD WF + + G L+R G +V DG L A Sbjct: 55 AGSNGSALDYSAGAIAQTGRDLDVAITGDGWFQVVANDGTLALSRRGDLRVGTDGILKDA 114 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVR 171 +GK ++ A P+ +P ++G G IS ++A L V+ + Sbjct: 115 TGK-TIMGNAG-PVSLPPY-SSLSIGTDGTISIVPMGELPTNIVALDRLMLVNPPVEQLV 171 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + G+ LE + V V G LE SN + + M +MI L + F I E Sbjct: 172 KSADGMVRVEDMNRLEPDANVRVAVGALETSNVSPVGAMVEMITLARSFEQHIQTIKSAE 231 Query: 232 K 232 + Sbjct: 232 E 232 >gi|304407727|ref|ZP_07389378.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] gi|304343210|gb|EFM09053.1| fagellar hook-basal body protein [Paenibacillus curdlanolyticus YK9] Length = 288 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 108/291 (37%), Gaps = 54/291 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVV---GAIKNDIDQ 54 M A ++R TV +N+SN +T G++ + F E++ ++ D+ Sbjct: 1 MLRGLYTAAAGLTTQQRRHDTVTNNISNINTPGYKQTNEVTRSFPEMLLALTGTNDNSDK 60 Query: 55 KISFVASGK----EYLSKEVGSFISTGTELDFALEGD----------------------- 87 +I +A+G + G T DF L + Sbjct: 61 RIGKLATGVFAEESLSLQLQGDLTETKRSGDFGLSANIQVPGITFDESGKYVSDTGEVTF 120 Query: 88 ---AWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 A+F +E G TR+GRF + +G L+ A G VL P+Q + Sbjct: 121 QPQAYFTVEGQDGQPRYTRNGRFDLDQNGYLIMADGS-RVLGKNGQPVQFQAGTSM---- 175 Query: 144 EKGEISQKGKVIAT---------MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---G 191 + +++ + I T + L + VR + E ++ G Sbjct: 176 DDLQLTDDFRFINTVTGADTGQSLQLTKIADPNALVREGDGKFRLVGDANLAEAVAAEDG 235 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V VK+G+ E SN +S M ++ + + + ++ +KS+ +A+ I Sbjct: 236 VVVKQGYYERSNVDSAQSMVDLMAALRAYEANQKVVQFYDKSLDKAVNEIG 286 >gi|88858142|ref|ZP_01132784.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas tunicata D2] gi|88819759|gb|EAR29572.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas tunicata D2] Length = 255 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 21/219 (9%) Query: 31 TVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 TVGF++ + + + A + ++ F + +G+ +TG LD A+ G W Sbjct: 31 TVGFKSD-FEQARSMQAFGEGLPTRV-FAMEERPGSKMAMGALSTTGRNLDVAVSGGGWL 88 Query: 91 ALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 ++ G TR G ++T G L++A G+ V+ PI +P E + G I Sbjct: 89 VVQDQNGEEAFTRGGNLQITSTGQLLTAKGE-AVIGEGG-PIILPVPLEKVQISTDGTIQ 146 Query: 150 QKGKV--------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLED-------LSGVTV 194 + + + + + V +Q + + G+ + +D V V Sbjct: 147 VRPQGAPASFLEDVERLKVV-VPQNQNLLEKGLDGLFRPKDKSTFKDQCDFCDTNLEVQV 205 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G LE SN N + EM MI ++F ++ EK Sbjct: 206 ISGALEMSNVNPVDEMVGMIAHQRQFELQVKMMKTAEKM 244 >gi|315179627|gb|ADT86541.1| flagellar basal-body rod protein FlgF [Vibrio furnissii NCTC 11218] Length = 243 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 12/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--PLQGSGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ GD + +++P G TR G V +G+L S +G Sbjct: 59 TNSAATRFDSGDVVKTGRPLDVAVMGDGYLTVQTPEGGEAYTRAGNIAVDVNGAL-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENS 175 + V+ + + V E+G IS G I L V + +++E+ Sbjct: 118 -FAVMGENGA--LVLPDFQKVEVSERGRISVIPPGGGAEIEVGTLKLVKANDNPLQKESD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + + PL + V + +E SN +++ E+ ++ LT+ F ++ +++ Sbjct: 175 SLLHTVDGVPLAADNSVQLAPEHIEGSNVSAIDELLNVMSLTRNFEMQIRMMKTA-ETLA 233 Query: 236 EAIRNIAS 243 +A + S Sbjct: 234 QAGNKLMS 241 >gi|260767924|ref|ZP_05876858.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] gi|260615954|gb|EEX41139.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] Length = 243 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 12/248 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--PLQGSGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ GD + +++P G TR G V +G+L S +G Sbjct: 59 TNSAATRFDTGDVVKTGRPLDVAVMGDGYLTVQTPEGGEAYTRAGNIAVDVNGAL-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENS 175 + V+ + + V E+G IS G I L V + +++E+ Sbjct: 118 -FAVMGENGA--LVLPDFQKVEVSERGRISVIPPGGGAEIEVGTLKLVKANDNPLQKESD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + + PL + V + +E SN +++ E+ ++ LT+ F ++ +++ Sbjct: 175 SLLHTVDGVPLAADNSVQLAPEHIEGSNVSAIDELLNVMSLTRNFEMQIRMMKTA-ETLA 233 Query: 236 EAIRNIAS 243 +A + S Sbjct: 234 QAGNKLMS 241 >gi|311280016|ref|YP_003942247.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] gi|308749211|gb|ADO48963.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] Length = 251 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 93/250 (37%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + A N++NT T GFR V + + VA Sbjct: 1 MDHAIYTAMGGASQTLDMQAVTASNLANTSTPGFRAQLTALRAV--PVVGQSVPTRTLVA 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G T LD AL+ D W A+++ G TR+G +VT G L + G Sbjct: 59 GSTPGADMTPGQLDYTARPLDVALQQDGWLAVQTADGSEGYTRNGNIQVTPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 PV+ A PI +P+ E + G +S IA +G L V + V R Sbjct: 118 N-PVIGEAG-PIAVPEGSE-VTIASDGTVSALNPGDPANTIAPVGRLKMVKATNTEVARG 174 Query: 174 NSGISPNIPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + G+ + V ++ G LE SN ++ M MI ++F +I Sbjct: 175 DDGMFRLTAAAQATRGPVLQADQSVRLQSGVLEGSNVKAVAAMADMISSARRFEMQMKVI 234 Query: 228 DENEKSMLEA 237 + + +A Sbjct: 235 SSVDTNEQKA 244 >gi|83646789|ref|YP_435224.1| flagellar basal body rod protein [Hahella chejuensis KCTC 2396] gi|83634832|gb|ABC30799.1| Flagellar basal body rod protein [Hahella chejuensis KCTC 2396] Length = 235 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 9/231 (3%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 A +RL T++ N+SN ++ ++ + A + + F G Sbjct: 12 LNADLERLRTISQNLSNQGAPAYKRDQMIVEKFQAAYLSGAKLEPEF----SLQKDFTQG 67 Query: 72 SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPI 131 +F TG +D AL+G+ + S TR G+ ++ DG L +G+ + PI Sbjct: 68 AFKLTGNAMDIALDGEGFLMASSSDKTFFTRKGQMRLNPDGYLGLVTGERLLGRSG--PI 125 Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG 191 + D F V G + Q G V+ + + + + P E +G Sbjct: 126 AL--NDADFVVQPDGSVVQDGVVLDKLAVVTFQHPEQLSYAGAGLFENPTKQAPTEA-TG 182 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V + +LE SN N+M E+ +++ LT+ + ++ + S+ AI + Sbjct: 183 AQVMQSYLEMSNVNTMEEIVRLVELTRHYQLSHNVLKAYDGSIDSAISTLG 233 >gi|163789628|ref|ZP_02184066.1| hypothetical protein CAT7_09300 [Carnobacterium sp. AT7] gi|159875160|gb|EDP69226.1| hypothetical protein CAT7_09300 [Carnobacterium sp. AT7] Length = 251 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 24/256 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND------IDQ 54 M +I + A++ ++ V+++++N +T G+++ + F+E++ N D Sbjct: 1 MSIPLSISKSGMNAIQNQMDVVSNDIANINTTGYKSKNISFNELLLNDMNGEAAYLSADA 60 Query: 55 KISFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVT 109 + S ++ G + G+ +S + A+ G+ +F + G TRDG F V Sbjct: 61 QGSGISIGSKSAVTSTNFTQGALVSDPNDYHLAIAGEGFFGVTGENGERYLTRDGAFHVN 120 Query: 110 DDGSLVSASGKYPVLDMASVPI-QIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVD 164 D S+ + +G + A++PI Q P+ D ++ E GE++ ++ T+ L+ Sbjct: 121 GDKSITNDNGD-TLEIQATIPINQWPEGD--VSIAENGEVTIQSENNSMLVGTIPLFYPA 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + S + E ++++ +LE SN + M +MI + ++ Sbjct: 178 QPNAMQPVGENKFSYDGAFGTGEG----SIQQHYLEASNVDLASSMTEMILAQRSYSMNL 233 Query: 225 TLIDENEKSMLEAIRN 240 + ++ M I Sbjct: 234 KVAQGTDE-MASVINQ 248 >gi|330447904|ref|ZP_08311552.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492095|dbj|GAA06049.1| flagellar basal-body rod protein FlgF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 243 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 104/248 (41%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + + ++ + V Sbjct: 1 MDSFLYTATSGASRVMKAQHVRSNNLSNADTAGFRADMERVQSI--PLQGAGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 + + G I TG LD A+ GD +F +++ TR G +V ++G + +G Sbjct: 59 TNSAATRFDAGDVIKTGRALDIAINGDGFFTVQTIVGNEAYTRAGNIRVDEEGMMR-VNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 +P++ + +P+ + + +KG ++ + + L + +Q +++ Sbjct: 118 -FPLMSE-GEALVLPEH-QNVEISDKGVVTVVPPGGGAKLEVGQLKLVDPEFTQ--LQKH 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + G+ I V + G LE SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDGLFHPINDQVFAQDPTVAITAGHLEGSNVSAINELVSVMSLTRNFEMQVRMMKTA-ET 231 Query: 234 MLEAIRNI 241 + +A + Sbjct: 232 LAQAGTRL 239 >gi|147678401|ref|YP_001212616.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] gi|146274498|dbj|BAF60247.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] Length = 256 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 101/262 (38%), Gaps = 29/262 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----------AIKN 50 M + + + A R+ +A +++N G++ + +F+E+V A + Sbjct: 1 MLKALSSAVTGLNAQRTRVDAIAVDLANIAAAGYKRNRTRFAELVSQEIEKQGIPVAAEG 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT 109 + S V + G + T D +EG+ +F + P G + TR+G F Sbjct: 61 RPARAGSGVRAESADKVLLAGETVKTERPFDLLIEGEGYFRVVLPGGEEVYTRNGCFTYD 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--KGKVI--ATMGLYSVDM 165 +G+L +SG Y + + +P+ + V G +S G VI + LY Sbjct: 121 KEGNLYCSSG-YRLEG-----VSLPEGWDKVIVSPDGRVSAEKDGSVIDAGQITLYRFSS 174 Query: 166 SQGFVRRE------NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 + IP TP + GV +++G+LE SN + E+ +I Sbjct: 175 MAALKPAGSFHFYLDEEAGEAIPGTPGSEGFGV-IRQGYLETSNVDLTGEITGLIEAQTV 233 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + ++ M N+ Sbjct: 234 YGFNARSVRIVDE-MWGMANNL 254 >gi|320107041|ref|YP_004182631.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] gi|319925562|gb|ADV82637.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] Length = 249 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M + LA Q L T A+N+SNT+TVGFR + F V+ G +++ + Sbjct: 1 MDSGLYAAYNGLLARTQALDTAANNLSNTNTVGFRAQRDYFRGVLAGMPPGDLESQVGDA 60 Query: 56 I-SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + SF G L G +TG LD AL+G +FA+++ G TRDG F DG+L Sbjct: 61 VNSFGILGGNTLDLSQGEITATGNPLDLALDGSGFFAVQTTHGTRYTRDGGFLRAADGTL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFV 170 + G VLD I +P + VG G IS + +G+ + S Sbjct: 121 ETRRGD-GVLDATGKKIIVPSGE--VQVGGDGTISVLTAEGSAIAGKLGILNFKGSD-LS 176 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + TP+ S V+ G LE +N ++++ Q++ + ++ + ++ Sbjct: 177 AEGANLFVAREGATPIA--SEARVQEGSLEGANQDAVHGTMQLLLMQRQAEMMQRAVNLF 234 Query: 231 EKSMLEAIRN 240 ++ + Sbjct: 235 SNTLDKTAAE 244 >gi|153831599|ref|ZP_01984266.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01] gi|156976142|ref|YP_001447048.1| flagellar basal body rod protein [Vibrio harveyi ATCC BAA-1116] gi|148872109|gb|EDL70926.1| flagellar basal-body rod protein FlgF [Vibrio harveyi HY01] gi|156527736|gb|ABU72821.1| hypothetical protein VIBHAR_04913 [Vibrio harveyi ATCC BAA-1116] Length = 243 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 105/246 (42%), Gaps = 12/246 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--ELQGAGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ + +E+P G TR G KV G++ S +G Sbjct: 59 TNSAATRFDSGDIMKTGRPLDVAIMGEGYLTVETPIGNEAYTRAGNIKVDTFGAM-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENS 175 +PV+ PI +P + + E+G +S G + L V + +++E+ Sbjct: 118 -FPVVGENG-PIVVP-DFQKIEISERGRVSVIPPGGGAEVEVGTLKMVKPAINQLQKESD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + ++ P V + +E SN +++ E+ ++ LT+ F ++ +++ Sbjct: 175 SLLHSVDGVPFPADETVQLSPEHIEGSNVSAIDELLSVMSLTRNFEMQVRMMKTA-ETLA 233 Query: 236 EAIRNI 241 +A + Sbjct: 234 QAGNKL 239 >gi|187935622|ref|YP_001885067.1| flagellar basal body rod protein FlgG [Clostridium botulinum B str. Eklund 17B] gi|187723775|gb|ACD24996.1| flagellar hook-basal body complex protein FlhP [Clostridium botulinum B str. Eklund 17B] Length = 256 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 16/247 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M F + A +++L +++++ NT T G++ V+FS+++ + + Sbjct: 1 MFNIFANAQSGMNAYQEKLDYLSNDLVNTSTTGYKATDVQFSDLLTESLDRKGTPLVNKD 60 Query: 57 ----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFA-LESPRGIILTRDGRFKVTDD 111 + V G +Y G+ ++TG + D A++G + A ++ I TRDG K+ + Sbjct: 61 AINGTGVKLGMDYRKDTQGNLLTTGIKTDIAIDGKGYIASVQQDGTIAYTRDGNLKIDSN 120 Query: 112 GSLVSASGK--YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV----IATMGLYSVDM 165 G+LV A G Y + E ++ G IS K + + +++ Sbjct: 121 GTLVDARGNKIYIQYEDGMSEGSPKLSSEDISIDGDGGISTKVDNQYVKVGQIPVFTAIG 180 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 + FV N+ + + + +++G LE SN ++ +I + F + Sbjct: 181 DKAFVAIGNNYFVASDDAQ-IALSNDYNIEQGMLEGSNVDTSEIFTDIISTQRAFQLSSK 239 Query: 226 LIDENEK 232 I ++ Sbjct: 240 GITTADE 246 >gi|332980933|ref|YP_004462374.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] gi|332698611|gb|AEE95552.1| flagellar hook-basal body protein [Mahella australiensis 50-1 BON] Length = 262 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 100/261 (38%), Gaps = 20/261 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAIKNDIDQKI- 56 M A RL+ +A+N++N +T G++ K+ F +V+ A + + Sbjct: 1 MLRGLYNATTAMQVETARLNAIANNIANAETTGYKKDKMVSQSFPDVLVARIGNKAGAVI 60 Query: 57 ----------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGR 105 V + G T D AL G+ +F L TRDG Sbjct: 61 RPFDIIGSINHGVHVDQVKTDWFQGPLQQTDNTTDLALTGNGFFVLRVGQNDYRYTRDGA 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVP--IQIPQKDEIFNVGEKGEISQKG-KVIATMGLYS 162 F V DG LV+ +G Y V + + I +E F+V G I + T+ + Sbjct: 121 FAVDADGYLVNQNG-YRVQGYDNQNEFVDILVGNERFSVDPAGNIYTDQRQYAGTIAVED 179 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLS-GVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 D + + + P + G +K+G +E SN + E+ M+ + + + Sbjct: 180 FDNRDDALEKAGDNLYVVYDPEQYQSHPVGTGIKQGHIEVSNVDINKEITDMMEVYRHYE 239 Query: 222 SITTLIDENEKSMLEAIRNIA 242 S ++ ++++ + + + Sbjct: 240 SAQRIVSMLDQTLDKTVNEVG 260 >gi|229917022|ref|YP_002885668.1| hypothetical protein EAT1b_1296 [Exiguobacterium sp. AT1b] gi|229468451|gb|ACQ70223.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sp. AT1b] Length = 260 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 102/254 (40%), Gaps = 23/254 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 S + + L+++L N++N DTVGF+ + F+ ++ N Sbjct: 1 MQSIYNSVNSLSQLQRQLDVTGHNIANVDTVGFKRQQGHFASLLSQAYNNQPRPEFEVGR 60 Query: 51 DIDQKISFVASGKEYLSKEV---GSFISTGTELDFALE-GDAWFALESPRGIILTRDGRF 106 D I G + G +T LD L+ +F +++P G+ +TR G Sbjct: 61 DTPNGIRIGVGGHVADITQQFNIGQVRTTDRGLDVFLKASRQFFVVDTPNGVGVTRSGNM 120 Query: 107 KVT--DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKG--KVIATMGL 160 +++ D+ +LV +G P+L PI +P + + G + S G + + + Sbjct: 121 QLSVGDETTLVDVNGN-PLLGDDGNPITMPNDATNQRIRQDGVVVASVNGVEQEFGRLDI 179 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 V + ++ + ++ T ++ G + G LE SN + EM M + + Sbjct: 180 VEVRNTSELRPLGDNVFAADLE-TEVDRPLGNLLIEGTLESSNVDLTKEMTDMTITQRAY 238 Query: 221 NSITTLIDENEKSM 234 + + +++ M Sbjct: 239 QMNSRAMSMSDQMM 252 >gi|225569971|ref|ZP_03778996.1| hypothetical protein CLOHYLEM_06066 [Clostridium hylemonae DSM 15053] gi|225161441|gb|EEG74060.1| hypothetical protein CLOHYLEM_06066 [Clostridium hylemonae DSM 15053] Length = 294 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 54/292 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S +A + + ++ +++N++N +T G+++ F + + Sbjct: 1 MVKSMYAAIAGLRSHQSKMDVISNNIANVNTWGYKSRSANFQDAMYQNVINSTAGNVNAG 60 Query: 49 ---KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE------------ 93 + Q V G + GS+ TG L+ + G+ +F + Sbjct: 61 GTGGQNSSQLGYGVNVGSITTNFTTGSWGFTGDPLNCMINGNGFFIVGPMIADPTDGIAS 120 Query: 94 ---SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASV-----------PIQIPQKD-- 137 + G+ L+R G F V ++G L+ G+ V P+QIP Sbjct: 121 NNFATSGLSLSRVGIFSVDNNGYLID-DGRNYVYGFTQNADGTWDTDVLRPLQIPNDATG 179 Query: 138 -----EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 + + +G G I+ + I + L +V+ G + S + Sbjct: 180 EQYKIQTYKIGTDGTITGITFDKEQITIGKLALAAVENPNGLEQSAGYLYSAGPNAGQIT 239 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +LE SN +M MI + + + + +I ++ + + + Sbjct: 240 AVEGDYFLSNYLEMSNVELASDMASMITTQRGYQANSKIITVTDEMLEQLVN 291 >gi|163789629|ref|ZP_02184067.1| flagellar hook-basal body complex protein [Carnobacterium sp. AT7] gi|159875161|gb|EDP69227.1| flagellar hook-basal body complex protein [Carnobacterium sp. AT7] Length = 252 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 110/259 (42%), Gaps = 26/259 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK----VKFSEVVGA--------I 48 M S + L+++ ++ N++N +T G+++ + + SE++ Sbjct: 1 MIRSLTTLSNSINILQKKQENISANVANINTSGYKSQEIIQSTRASEMMSNHLGGPLLNQ 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 + DI + + G +T + D A++GD +F +E+ G TR+G F Sbjct: 61 QQDIGGFTFGSQIDEIVQNFNQGGLKATASTTDVAIQGDGFFTVEAANGETSYTRNGNFN 120 Query: 108 VTDDGSLVSASGKYPVLD----MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 V D G LV+ G Y VL + PIQ+ D F + +G I+ G ++ + + Sbjct: 121 VNDAGELVTQEG-YRVLGVTANGQAAPIQVDGAD--FTIDARGTIAGTGM---SLMITNF 174 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 D + G R ++ + +LE SN ++ E+ ++ +++ F + Sbjct: 175 DDTAGLTRVGDTLFTGQGGTVQTGGTVVQQ---SYLETSNVETVDEITNLMQVSRAFEAN 231 Query: 224 TTLIDENEKSMLEAIRNIA 242 + ++++ +A+ + Sbjct: 232 QKALSAADETLRKAVNEVG 250 >gi|205375363|ref|ZP_03228153.1| flagellar hook-basal body complex protein [Bacillus coahuilensis m4-4] Length = 279 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 56/273 (20%), Positives = 109/273 (39%), Gaps = 40/273 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M N+ L+Q L ++ N++N DT G++ +FSE++ ++ + Sbjct: 1 MNRIMNVATNTMAQLQQHLDVISHNVANVDTNGYKAQNARFSEMLVQQFDNQKNPANEIG 60 Query: 58 -----------FVASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPRG----IILT 101 G+ ++ G+ STG LDF L+ +F + + G + + Sbjct: 61 RLTPNGLRLGVGAGIGQIQMNTSQGALQSTGRSLDFILQNQTHYFKVLNQSGGQSEVNYS 120 Query: 102 RDGRFKV----TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKV 154 R G F + D L A+G P+L+ PI IP F + G + + +G+ Sbjct: 121 RSGAFYLSPLNDDTAMLTDANGN-PILNSDDQPITIPGDATSFYPDQNGVLVVETPRGQE 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-------------VTVKRGFLED 201 +G+ S+ Q + + + L+ + ++VK+GF+E Sbjct: 180 RIELGVVSIQKPQFLESKGGNLVGLPTNFNQLDVDANTILTDLNGANRAEISVKQGFIEK 239 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 SN + E+ MI++ + + I ++ M Sbjct: 240 SNVDLSKELTDMINVQRSYQFQARTISMADQMM 272 >gi|134280876|ref|ZP_01767586.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 305] gi|125657219|gb|ABN48707.1| flagellar basal body rod protein [Burkholderia pseudomallei] gi|134247898|gb|EBA47982.1| flagellar basal-body rod protein FlgF [Burkholderia pseudomallei 305] Length = 241 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 11/245 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ ++ A+NM+N T GF ++ + Sbjct: 1 MDALIYTVMSGADRTLHGIAVHANNMANAQTDGFLAELEMAES--QPVRGYGYDSRHLLN 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 L+ E G + TG ELD A+ G +F +++ TR G F++ DG+L + +G+ Sbjct: 59 PRANALNGEAGVVVDTGRELDAAINGGGYFTVDAQGSEAYTRAGNFEIDADGAL-TVNGR 117 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATMGLYSVDMSQGFVRRENSG 176 PV+ PI +P+ +GE G IS +V A L VD + + +G Sbjct: 118 -PVIGEGG-PIVLPEF-TSLRIGEDGTISITSPGDTEVQAVERLALVDAPASALVKNEAG 174 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + PL + V V G LE SN + + EM + L + F + + + M + Sbjct: 175 LLVARDGQPLPASNEVKVLGGHLERSNVSPVEEMIATMSLNRAFEVQMRMFNAAGE-MAD 233 Query: 237 AIRNI 241 A + Sbjct: 234 AGNRL 238 >gi|123442782|ref|YP_001006759.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089743|emb|CAL12596.1| flagellar basal-body rod protein FlgG [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 217 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 22/202 (10%) Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 I + VA+ + + G+ T D A++G+ +F ++ P G TRDG F+ Sbjct: 24 QIGTGVRPVATERLH---SQGNLSKTDNTKDVAIKGEGFFQVQMPDGTNAYTRDGSFQTD 80 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSV 163 +G LV++ G I IP VG G +S + + + L + Sbjct: 81 QNGQLVTSGGF-----QIQPAITIPANAMSMTVGRDGIVSVTLPGQTATQQVGQLTLATF 135 Query: 164 DMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + G + +E + TP + G+ + +G++E SN N E+ MI Sbjct: 136 INNSGLESVGENLYQETASSGAPNETTPGLNGGGL-LYQGYVETSNVNVAEELVNMIQTQ 194 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + + + + +++ + + + Sbjct: 195 RAYEINSKAVSTSDQMLQKLTQ 216 >gi|311033282|ref|ZP_07711372.1| hypothetical protein Bm3-1_22549 [Bacillus sp. m3-13] Length = 280 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 110/282 (39%), Gaps = 41/282 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M L+++L ++ N++N DTVG++ F E++ N+ Sbjct: 1 MNRIMLNATNTMNQLQKQLDLISHNVANVDTVGYKQRSASFQELLAQQSNNQPLAQYDNQ 60 Query: 54 ---------QKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALE-SPRG---II 99 + S K L G +T LDFAL + + +F ++ + G Sbjct: 61 TARQSELGIRVGSGSGLSKTQLHLTQGPMKATDRMLDFALTKENQFFTVQVTENGQTSTQ 120 Query: 100 LTRDGRFKV----TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KG 152 TR+G F + + LV++ G +PVLD PI +P+ + + E G +S G Sbjct: 121 FTRNGVFYLSPVNNAEVMLVTSEG-HPVLDSDEQPIILPENVKEVKLQESGILSAVMTDG 179 Query: 153 KVIAT-MGLYSVDMSQGFVRRENSGISPNIPPTPLEDL----------SGVTVKRGFLED 201 + IA +G+ V Q R S + ++ + +++G LE Sbjct: 180 QAIARELGVAEVIRPQMLEARPGSLYALPPENVANQESVVGFLQGGARQDIRMQQGMLEQ 239 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 SN + EM +M + + + + ++ M + + S Sbjct: 240 SNVDLASEMTEMTLMQRSYQFNAKSVQFADQMMG-LVNGLKS 280 >gi|28900123|ref|NP_799778.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837106|ref|ZP_01989773.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ3810] gi|260365773|ref|ZP_05778269.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus K5030] gi|260880695|ref|ZP_05893050.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AN-5034] gi|260897699|ref|ZP_05906195.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus Peru-466] gi|260899390|ref|ZP_05907785.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ4037] gi|28808406|dbj|BAC61611.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749694|gb|EDM60439.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ3810] gi|308086220|gb|EFO35915.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus Peru-466] gi|308092603|gb|EFO42298.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AN-5034] gi|308109250|gb|EFO46790.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus AQ4037] gi|308115048|gb|EFO52588.1| flagellar basal-body rod protein FlgF [Vibrio parahaemolyticus K5030] Length = 243 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 106/246 (43%), Gaps = 12/246 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--ELQGPGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ + A+E+P G TR G ++ G++ S +G Sbjct: 59 TNSASTRFDSGDVVKTGRALDVAVMGEGYLAVETPAGNEAYTRAGNIQIDTFGAM-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENS 175 +PV+ P+ +P + + E+G +S G IA L V +++E+ Sbjct: 118 -FPVVGENG-PLVVPDY-QKIEISERGLVSVIPPGGGAEIAVGTLKLVKPEINQLQKESD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + ++ P V + +E SN +++ E+ ++ LT+ F ++ +++ Sbjct: 175 SLLHSVDGVPFAADETVQLAPEHIEGSNVSAIDELIGVMSLTRNFEMQVRMMKTA-ETLA 233 Query: 236 EAIRNI 241 +A + Sbjct: 234 QAGNKL 239 >gi|86157778|ref|YP_464563.1| flagellar basal body rod protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774289|gb|ABC81126.1| flagellar basal body rod protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 235 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 11/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + +A ++L VADN++N T GF+ + F + + + VA Sbjct: 1 MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFESFLAPGAAQDKRYAAAVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 SG + G TG LD E + A+ + G TRDGR + D LV + G Sbjct: 61 SG---VDLRPGPTQRTGNALDVVPEAGLFLAVRTAGGATAYTRDGRLTLDADRRLV-SDG 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + P+L PI +P + V G + +AT+GL +D R S ++P Sbjct: 117 R-PLLSAQGEPIVLPPDLDA-RVDAAGRVWAGDVEVATLGLARLDGPVD--RVGPSLLAP 172 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 L S V+ G LE NA ++ Q++ + + + I + A+ Sbjct: 173 GAGGRALP--SEGAVRSGELELGNAGALEASIQLVAAQRAYEASLQAIQTYRQLDQRAV 229 >gi|318604253|emb|CBY25751.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. palearctica Y11] Length = 243 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 21/246 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISF 58 M ++ + A+N++N +T GFR + ++V G N Sbjct: 1 MDKLLYTAVSGANRSLTQQQIHANNLANVNTQGFRADLERATATQVPGGSYNS----RVA 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V S + GS TG ELD A++ A+ S + TR+G+ +V DG L + + Sbjct: 57 VLSQNAGVDMTAGSLQETGRELDVAIKDRGLIAVLSGGREVYTRNGQMEVGPDGDL-TIN 115 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFV 170 G PVL I +P +V + G I+ + + + L + +Q + Sbjct: 116 G-MPVLGDGGA-IVLPAY-SAVSVADDGTIAIIPQAGGIKTPAEVDRIKLVDIPANQ--L 170 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + N G+ N D V + LE SN +++ EM I L+++F + ++ Sbjct: 171 SKNNRGLLVNRRGAAARD-ENVQLVSKHLESSNISAISEMTASISLSRQFEAQIKMMKVA 229 Query: 231 EKSMLE 236 E+ Sbjct: 230 EELAQS 235 >gi|300114798|ref|YP_003761373.1| flagellar basal-body rod protein FlgF [Nitrosococcus watsonii C-113] gi|299540735|gb|ADJ29052.1| flagellar basal-body rod protein FlgF [Nitrosococcus watsonii C-113] Length = 247 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 13/209 (6%) Query: 32 VGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-WF 90 GFR +F + + + + + + + G STG ELD A++G+ W Sbjct: 32 TGFRADLSQFRSI--PVFGEGHPTRVYAMAERPGVDFTPGPLQSTGRELDVAVQGEGGWL 89 Query: 91 ALESP-RGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 A+ SP G TR G K+T +G L + +G +PVL I IP + +G G +S Sbjct: 90 AVRSPSGGEAYTRAGNLKITSNGILTTGAG-HPVLGEGGT-IAIPP-AQKIEIGADGTLS 146 Query: 150 QK--GKVIATM----GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSN 203 + G+ T+ + V+ ++++ G+ + V++ G LE SN Sbjct: 147 IRPLGQAANTLVVLDRIKLVNPPLDQLQKDEEGLMTMANGGQAPADASVSLVSGKLEASN 206 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEK 232 A+ + + +MI L +++ T ++ ++ Sbjct: 207 ASGVDALVEMIALARQYEMQTKMMQTAKE 235 >gi|213418946|ref|ZP_03352012.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 226 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 83/234 (35%), Gaps = 23/234 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTQGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ E + G IS + + L + ++ V+ Sbjct: 118 -HPVIGEGG-PITVPEGSE-ITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQ 172 Query: 172 RENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 R + G+ E + + G LE SN + M MI ++ Sbjct: 173 RSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARR 226 >gi|220917700|ref|YP_002493004.1| flagellar basal-body rod protein FlgF [Anaeromyxobacter dehalogenans 2CP-1] gi|219955554|gb|ACL65938.1| flagellar basal-body rod protein FlgF [Anaeromyxobacter dehalogenans 2CP-1] Length = 235 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 11/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + +A ++L VADN++N T GF+ + F + + + VA Sbjct: 1 MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFESFLAPGAAQDKRYAAAVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 +G + G TG LD E + + + G TRDGR + D LV + G Sbjct: 61 TG---IDLRPGPTQRTGNALDVVPEAGMFLTVRTAGGGTAYTRDGRLTLDPDRRLV-SDG 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + P+L PI +P E V G + +A +GL +D R S ++P Sbjct: 117 R-PLLSPRGEPIVLPPDLEA-RVDAAGRVWAGDVEVAALGLARLDGPVD--RVGPSLLAP 172 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 L V+ G LE NA ++ Q++ + + + I + A+ Sbjct: 173 GAGGRALPAEG--AVRSGELELGNAGALEASIQLVSAQRAYEASLQAIQTYRQLDQRAV 229 >gi|327441420|dbj|BAK17785.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 279 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 41/280 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M + L+ +L T++ N++N++T GF+ + F+E++ N+ +D+ + Sbjct: 1 MLRTMVSATNTLSQLQHQLDTISTNIANSNTTGFKAQQANFTEMLYQQFNNDELDRTVRD 60 Query: 59 VASGKEY----------LSKEVGSFISTGTELDFAL-EGDAWFAL--ESPRG---IILTR 102 G Y ++ GS T +LDFAL + +F + ++P G TR Sbjct: 61 TPVGIRYGVGAQIGLIQSNQSQGSLQVTNRDLDFALTTENQYFNVLMQNPEGDVRTAYTR 120 Query: 103 DGRFKVTDDG----SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI 155 +G F VT + SLV++ G Y V D PI P F + G + + G + Sbjct: 121 NGSFYVTQNEPGILSLVNSDG-YQVADANGQPITFPDNVTGFTMDSDGSLVASYENGTPL 179 Query: 156 A-TMGLYSVDMSQGFVRRENS---GISPNIPPTPLEDLS----------GVTVKRGFLED 201 +G+ + + + G+ N+ V V++G LE Sbjct: 180 KFQLGISELQKPNVMEKLQGGTYIGLPENLDALGFTQAQVLTDLQGANRQVGVQKGALEM 239 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 SN + EM +I + + T I ++ ML I I Sbjct: 240 SNVDVSKEMTNLIQAQRSYQFNTRAITIADQ-MLGLINGI 278 >gi|310659663|ref|YP_003937384.1| flagellar basal body rod protein [Clostridium sticklandii DSM 519] gi|308826441|emb|CBH22479.1| putative Flagellar basal body rod protein [Clostridium sticklandii] Length = 372 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 7/197 (3%) Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFKVT 109 I + + ++ G+ T L A+EG +F + I +R+G F + Sbjct: 175 IGTMNGGALADRSMINFNQGNLDPTENPLHVAIEGKGFFKILDMQDNQIKYSRNGGFSIN 234 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSVDM 165 +G LV SG VL + I +P+ ++ + G + + + I T+G+ ++ Sbjct: 235 PEGILVDYSGN-VVLSASDNEISVPEGASKIDIDKFGNIVATVDGEPEEIDTLGVVNIAN 293 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 ++ +++ S ++ E V +G+LE SN + + EM +MI+L + + S Sbjct: 294 TESMIKQGESYLTMADGIEADEAEFDGQVLQGYLEGSNVDIISEMAEMINLLRGYESGQK 353 Query: 226 LIDENEKSMLEAIRNIA 242 +I + M +A I Sbjct: 354 VIRSYDDIMSKAANEIG 370 Score = 79.3 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 61/170 (35%), Gaps = 16/170 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +R+ + N++N+ T F+ + + ++ + + Sbjct: 1 MFRGIYTATNGMRTDSKRIDVITSNIANSQTTAFKKDVLVTESFPEQLMVKLNGVENNLR 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFKVTDDGSLVSAS- 118 ++ ++ + + T + ++E +F +E GI + + ++G L +A Sbjct: 61 PTRQLVNVDPPADFQT-NDSIVSIEITSGYFRMEDRHGIGYHKSAKITRDEEGYLRTALR 119 Query: 119 ----------GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 G Y +LD+ PI P + G + G+ +A + Sbjct: 120 DSDSNTHAKFGAY-LLDVNGNPISAPDGA--ITLLPNGILQAGGQDVARV 166 >gi|251799752|ref|YP_003014483.1| hypothetical protein Pjdr2_5791 [Paenibacillus sp. JDR-2] gi|247547378|gb|ACT04397.1| protein of unknown function DUF1078 domain protein [Paenibacillus sp. JDR-2] Length = 275 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 108/275 (39%), Gaps = 36/275 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M +S + AL+Q+L +ADN++N +TVG++ + F +++ + D Sbjct: 1 MNSSMINASVSMNALQQKLDMLADNIANVNTVGYKRKEATFEDLLNNTRKQPDAFNQPGR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF--ALESPRGIILTRDGR 105 + + + G+ +T + D A+EGDA F A+ + TR+G Sbjct: 61 LTSLNFNQGWGSRLAMIQPNLQQGTIKTTEKDTDLAIEGDALFEVAVNANGDRAYTRNGA 120 Query: 106 FKV----TDDGSLVSASGKYPVLDM--ASVPIQIPQKDEIFNVGEKGE---ISQKGKVI- 155 ++ D L + G V + P+ +P + V G ++ G I Sbjct: 121 LQLTVAANGDTILATPEGYPVVANTPAGEGPLVVPSGYQ-LRVNADGTAEGVATDGSTIE 179 Query: 156 -ATMGLYSVDMSQGFVRRENS--------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 ++ L ++ ++ + +G+ +++G LE SN N Sbjct: 180 LGSIKLVQATRPAALTLVADNLYEIADGINVADVLQNVTPNGENGIALRQGALEQSNVNL 239 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++I++ + + + + +M+ ++ Sbjct: 240 GDEMTELINVQRAYQMAARAL-TSSDTMMGLANSL 273 >gi|172058672|ref|YP_001815132.1| hypothetical protein Exig_2667 [Exiguobacterium sibiricum 255-15] gi|171991193|gb|ACB62115.1| protein of unknown function DUF1078 domain protein [Exiguobacterium sibiricum 255-15] Length = 260 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 101/256 (39%), Gaps = 26/256 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 S + L+++L T N++N +T G++ +F+E++ N+ ++ + Sbjct: 1 MQSLYTSASTMAQLQKQLDTTGHNLANANTNGYKRRDSQFNELLVRNLNNQPAGLTPGSL 60 Query: 62 GKE--------------YLSKEVGSFISTGTELDFALEGD-AWFALESPRG-IILTRDGR 105 G+F +TG +LD AL +F + G TRDG Sbjct: 61 TTPAGLRLGVGGYVANEATRFATGTFQNTGRKLDAALSNPHHFFGVIDADGVTKFTRDGN 120 Query: 106 FKVT--DDGS-LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS----QKGKVIATM 158 F+++ +G L++ V++ A+ PI P + + G I+ + +V+A + Sbjct: 121 FELSPQANGQVLLTDDAGRSVINQANEPITFPDDATSIELNKDGNITGVLNGERRVLARI 180 Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 G+ + ++ +G + G LE SN + EM + + + Sbjct: 181 GVADIPNHGELTDVGGGLY---TTAGQYQNATGNPLTVGTLETSNVDMATEMTNLTQIQR 237 Query: 219 KFNSITTLIDENEKSM 234 + + + +++ M Sbjct: 238 AYQFNSKALTTSDQMM 253 >gi|197122908|ref|YP_002134859.1| flagellar basal body rod protein [Anaeromyxobacter sp. K] gi|196172757|gb|ACG73730.1| flagellar basal body rod protein [Anaeromyxobacter sp. K] Length = 235 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 11/239 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + +A ++L VADN++N T GF+ + F + + + VA Sbjct: 1 MADGIYVSMCGAVARAEQLDAVADNLANAQTPGFKAARPAFESFLAPGAAQDKRYAAAVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 +G + G TG LD E + + + G TRDGR + D LV + G Sbjct: 61 TG---IDLRPGPTQRTGNALDVVPEAGMFLTVRTAGGGTAYTRDGRLTLDPDRRLV-SDG 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + P+L PI +P E V G + +A +GL +D R S ++P Sbjct: 117 R-PLLSAQGEPIVLPPDLEA-RVDAAGRVWAGDVEVAALGLARLDGPVD--RVGPSLLAP 172 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 L V+ G LE NA ++ Q++ + + + I + A+ Sbjct: 173 GAGGRALPAEG--AVRSGELELGNAGALEASIQLVSAQRAYEASLQAIQTYRQLDQRAV 229 >gi|299538001|ref|ZP_07051287.1| flagellar hook-basal body complex protein [Lysinibacillus fusiformis ZC1] gi|298726583|gb|EFI67172.1| flagellar hook-basal body complex protein [Lysinibacillus fusiformis ZC1] Length = 279 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 41/280 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M + L+ +L T+++N++N++T G++T + F+E++ N+ Q Sbjct: 1 MLRTMITATNTMGQLQNKLDTISNNIANSNTTGYKTKEASFNELLYQQFNNDKQDRAERQ 60 Query: 57 --------SFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTR 102 S G+ +++ GS +T +LD A + +F + P G + TR Sbjct: 61 TPVGIRYGSGAMVGQIKSNEKQGSLQTTNRDLDLAFTKAKQYFNILMPDGENGTETVYTR 120 Query: 103 DGRFKVTD--DG--SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI 155 G F ++ +G LV+A G YPV ++A I +P + F V + G + G +I Sbjct: 121 QGDFYLSPLNNGTVMLVTAEG-YPVANVAGQAITLPDTVQKFAVRDGGVLEASYPNGDII 179 Query: 156 AT-MGLYSVDMSQGFVRRENSGISPNIPPTP-------------LEDLSGVTVKRGFLED 201 T + + Q S + + + ++ G LE Sbjct: 180 RTNLAVTEFQKPQLMEHVAGSYMGLPNNLAELGYTQAEVLTELVGANRQQIGMQSGTLEM 239 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 SN N EM ++I + + + ML I I Sbjct: 240 SNVNLSKEMTELIQTQRSYQFNARAV-TLADQMLGLINGI 278 >gi|288870659|ref|ZP_06114878.2| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] gi|288866377|gb|EFC98675.1| flagellar basal-body rod protein FlgG [Clostridium hathewayi DSM 13479] Length = 248 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 27/252 (10%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVASGKEYLSK 68 A + L A+NM+N T G++ ++ F +++ KN V + Sbjct: 1 MNAFQSELDVTANNMANVSTPGYKVLRSSFDDLLYTQMDTKNANQMVGHGVKTNGAETVF 60 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGII----LTRDGRFKV---TDDGSLVSASGKY 121 E G F T ELDFA+ G A+FA+ES TRDG F++ + L + G Y Sbjct: 61 EQGIFEKTERELDFAILGKAYFAVESENEDAEEPYYTRDGSFQISATDEGNYLTTRDGHY 120 Query: 122 PVLDMASVPI-----QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 VL I + + + + ++S +V +GLY+ + G V + Sbjct: 121 -VLSRDGDRIELEYKTVEESNGKKQFTNELDLSGLSEV---IGLYTCENPDGLVPVGKNL 176 Query: 177 ISPNIPPT---PLEDL----SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 S P+ED+ +G + G LE S+ EM ++ + F + ++ Sbjct: 177 YSTGAASGEWIPIEDMDETQAGSRLLTGTLELSSTYVPTEMINLLQAQRAFQLNSRIVSA 236 Query: 230 NEKSMLEAIRNI 241 ++ M E I N+ Sbjct: 237 ADQ-MEEMINNL 247 >gi|222053611|ref|YP_002535973.1| protein of unknown function DUF1078 domain protein [Geobacter sp. FRC-32] gi|221562900|gb|ACM18872.1| protein of unknown function DUF1078 domain protein [Geobacter sp. FRC-32] Length = 293 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 104/287 (36%), Gaps = 51/287 (17%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G++ L + ++ + +N+SN +TVGF+ ++ FS+++ + Q + Sbjct: 5 SAMFTGVSGLLNNGEAMNVIGNNISNVNTVGFKGARMLFSDMLSQNIGNNSQIGRGMQIQ 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---------LTRDGRFKVTDDGS 113 K GSF ST D ++G+++FAL+ P + L+R G F V D Sbjct: 65 KVENLFGQGSFESTENVTDLGIQGNSFFALKPPTTVAPVAAQNAAFLSRAGAFHVDKDLY 124 Query: 114 LVSASGKYPVLDMASVPIQ----------------IPQKDEIFNVGEKG----------- 146 LV+ G Y VLD A PI+ + I + + G Sbjct: 125 LVNPDG-YQVLDTAGQPIRFYTGGTADQNFSKVVKVEPNGLITYLAQDGITNLYYSTTGV 183 Query: 147 ----EISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP----------PTPLEDLSGV 192 + + + + S G + S + + Sbjct: 184 AGLPTTTANAAAVQRLAVVSATDLSGLEKAGGSLYKATATSGVSAAGFTLAGNQPNGTSE 243 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V LE SN + + +MI + +++ + I ++ E + Sbjct: 244 KVLSNSLEQSNVDLASQFVKMIITQRAYSANSKTITTADEMTQEVLN 290 >gi|162421354|ref|YP_001604846.1| flagellar basal body rod protein FlgF [Yersinia pestis Angola] gi|162354169|gb|ABX88117.1| flagellar basal-body rod protein FlgF [Yersinia pestis Angola] Length = 243 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 17/243 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + A+N++N++T GFR + V Sbjct: 1 MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLE--KATATQVMGGGYSSRVAVL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S + S TG +LD AL+ A+ S TR+G+ V+ +G+L + +G Sbjct: 59 SQNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVSAEGAL-TING- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATMGLYSVDMSQGFVRR 172 PVL PI +P ++ + G I S+ + I + L + +Q +R+ Sbjct: 117 LPVLGDGG-PIVLPPY-SALSIADDGTIAIIPQAGGSKTPEEIERIKLVDIPANQ--LRK 172 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 N G+ + P V V LE SN +++ EM I L+++F + ++ E Sbjct: 173 NNRGLLVSNRG-PAARDETVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVAED 231 Query: 233 SML 235 Sbjct: 232 LAQ 234 >gi|317133467|ref|YP_004092781.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] gi|315471446|gb|ADU28050.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] Length = 239 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 20/250 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND---IDQ 54 M + +A R++ + +N+ N D+ GF++ F E + D + Sbjct: 1 MIRGIFSAASGMIAQSDRINVMGNNLDNADSQGFKSDTATLRSFDEELALRTTDAVPVGT 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + V G TG+ + A+ G +FA+ +P G + TR+G F G Sbjct: 61 LNAGVHVSGVETDLSQGELQQTGSSYNIAVNGGGFFAVAAPGGQTLYTREGDFAPDASGY 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 L SG+ +LD PI F + G + T+ LY+ G + Sbjct: 121 LALPSGQ-RLLDSTGAPI----SAAGFRLAANGAYTNDAGQTGTVPLYT-----GTAAKR 170 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G T + +G + +G++E SN N++ +M ++ ++ F S + + Sbjct: 171 TDGFF---DLTGAQGATGSVLLQGYVEKSNVNTVTDMTGLMEASRAFQSCQQAYNTGTDT 227 Query: 234 MLEAIRNIAS 243 + + + + S Sbjct: 228 LDKLVTQVGS 237 >gi|149189837|ref|ZP_01868117.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148836323|gb|EDL53280.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 243 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 109/250 (43%), Gaps = 16/250 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + ++N+SN DT GFR + + ++ + V Sbjct: 1 MDSLLFTATTGASRVLKAQHVRSNNLSNADTAGFRADMERVKSI--PLQGSGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G + TG LD A+ G+ + ++++P G TR G KV + G++ S +G Sbjct: 59 TNSAATRFDAGDVVKTGRALDIAIMGEGYISVQTPTGNEAYTRAGNIKVDELGAM-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVRRE 173 V D P+ +P+ + + E+G +S + T+ L DM+Q +++E Sbjct: 118 FAVVGDNG--PMVLPEF-QKVEISERGRVSVIPPGGGAEVEVGTLKLVKPDMNQ--LQKE 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + + ++ P V + +E SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDSLLHSLDGQPFAADPTVNLAPEHIEGSNVSAIDELLSVMSLTRNFEMQIRMMKTA-ET 231 Query: 234 MLEAIRNIAS 243 + ++ + S Sbjct: 232 LAQSGNKLMS 241 >gi|103488387|ref|YP_617948.1| protein of unknown function DUF1078-like protein [Sphingopyxis alaskensis RB2256] gi|98978464|gb|ABF54615.1| protein of unknown function DUF1078-like protein [Sphingopyxis alaskensis RB2256] Length = 275 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 105/271 (38%), Gaps = 36/271 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L+ A + +S +++N++N VGF+ K +F ++ + + I+ + Sbjct: 2 SFYTSLSGLKASQTDMSVISNNIANAGAVGFKRSKAQFGDIFASSPTQSTKMIAGQGTRL 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSAS 118 ++++ GS+ S+ LD A+ G+ F ++ + TR+G F+ T DG ++ + Sbjct: 62 NGITQQFTQGSYESSEKTLDLAIVGEGLFIVKGEPPREQVSYTRNGSFEPTPDGYVIDTT 121 Query: 119 GK----YPVLDMASVP---------IQIPQKDEI--------FNVGEKGEISQ-----KG 152 G PV + +V Q+P +G G ++ + Sbjct: 122 GARLQLLPVDAVGNVTDNTLAGAFDFQLPTGAPSDPASALVNVTIGLDGLVTATFANGED 181 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSM 207 +++ + + + G ++ P + ++ G LE SN + Sbjct: 182 QMLGKVAMATFPTMSGLRPTGDAHWQSTGESGPPTIDAATNGPMGAIRSGALERSNVDIT 241 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E+ ++ + F + I+ + I Sbjct: 242 EELVMLMAAQRNFQANAKAIEGASQLTQTII 272 >gi|294084436|ref|YP_003551194.1| flagellar hook protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664009|gb|ADE39110.1| Flagellar hook protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 269 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 102/264 (38%), Gaps = 36/264 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVASGKEYLS 67 + A + + +++N++N T GF+ +F ++ G K Q + Sbjct: 7 SGIAAANKEIGVISNNIANASTNGFKRSSAQFQDIYGIAGEKRAAAQVGKGTVFDASRRN 66 Query: 68 KEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASGKYPVL 124 G+F ++G+ELD A+ G+ F + P + TRDG ++ ++G +V+ G + ++ Sbjct: 67 HAQGAFKTSGSELDLAVAGEGMFIVAPPNAGNELRYTRDGSMRLDENGFIVNNEGHF-LI 125 Query: 125 DMASVPIQIPQKD--------------EIFNVGEKGEISQ---------KGKVI--ATMG 159 + P+++P + ++G G+I G VI T+ Sbjct: 126 GLDGAPLRLPLRRNPAEDGDVAAEELLTSVSIGVDGQIKATYAGAMTRGNGAVINRGTIA 185 Query: 160 LYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 L + N N P + V G LE SN E+ MI Sbjct: 186 LARFQNEADLTSKGNGQFIMNAKTGLPAVGAASQGNFGDVLSGNLEVSNVKINDELTSMI 245 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 Q +++ + ++ + + + + Sbjct: 246 RAQQAYSASSRMLQADSDIVKKFL 269 >gi|134300239|ref|YP_001113735.1| hypothetical protein Dred_2400 [Desulfotomaculum reducens MI-1] gi|134052939|gb|ABO50910.1| protein of unknown function DUF1078 domain protein [Desulfotomaculum reducens MI-1] Length = 856 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 8/166 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M S G++ + R+ +N++N +T G+++ +V F + + Sbjct: 1 MLRSLYSGISGMRNHQTRMDVTGNNIANVNTNGYKSSRVNFQDTLSQTVRSAGNGTNPAQ 60 Query: 57 --SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 S ++ G + G STG LD ++G+ +F + TR+G F V G L Sbjct: 61 VGSGMSVGSVSNNFTQGPMQSTGRTLDLGIQGNGFFVVSDGTNEFYTREGIFFVDKQGFL 120 Query: 115 VSASGKYPVLDMASVPI-QIPQKDEIFNVGEKGEISQKGKVIATMG 159 V+ G V +A I + N+G G I+ + Sbjct: 121 VNGEG-LRVQSLAGQDIRVLNGPVSTINIGPDGAIAGTNTAGQPLK 165 Score = 78.9 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 12/130 (9%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V+ G + + P ++ + + + + L + +G + Sbjct: 731 VNIGGSHAADLIGDKPDKVDGEAASVTPPPQ-------DTMGVIKLVTFQNPEGLEKAGR 783 Query: 175 SGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + ++ P + + T+ G+LE SN + E MI + + + +I Sbjct: 784 NLFGTSVSSGEPKQGQANQSGFGTINSGYLEMSNVDLTEEFTNMITTQRGYQANARVITV 843 Query: 230 NEKSMLEAIR 239 ++ + E I+ Sbjct: 844 SDSLLEELIQ 853 >gi|167750705|ref|ZP_02422832.1| hypothetical protein EUBSIR_01683 [Eubacterium siraeum DSM 15702] gi|167656384|gb|EDS00514.1| hypothetical protein EUBSIR_01683 [Eubacterium siraeum DSM 15702] gi|291532044|emb|CBK97629.1| fagellar hook-basal body proteins [Eubacterium siraeum 70/3] gi|291558218|emb|CBL35335.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a] Length = 242 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 110/250 (44%), Gaps = 19/250 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---QKIS 57 M +F G +A ++ L+ ++N++N +TVGF+ + F++ + ++ + + Q Sbjct: 1 MNIAFYTGKTGLIAQQEGLNVYSNNIANVNTVGFKASRPSFADCIYTVQRNTEPDWQTGH 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGII-LTRDGRFKVTDDG--- 112 L G F T +LDFA+ + +FA+ G + TR G F+++ G Sbjct: 61 GEYVHSTQLMYSEGVFTYTDNDLDFAIPTEEGFFAVMDKYGDVNYTRAGDFQMSQIGDHW 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 LVSA+G++ VLD I +P + + + +G+Y+ D + G Sbjct: 121 ELVSANGEF-VLDYEGNHITVPFIEGTSKPDYE-------ALTKMIGVYTFDNNFGLELL 172 Query: 173 ENSGI-SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 ++ + + + D S ++ LE SN + +M ++I + + ++ + Sbjct: 173 GSNKMTATERSGEAVADRSIDKIRM-ALERSNTDIAGDMVRIIETQRSYQMSARVVQTAD 231 Query: 232 KSMLEAIRNI 241 + + N+ Sbjct: 232 E-LERITNNL 240 >gi|257876010|ref|ZP_05655663.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC20] gi|257810176|gb|EEV38996.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC20] Length = 260 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 96/253 (37%), Gaps = 19/253 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------KNDIDQK 55 I + L+ L T A+N++N +T G++ F ++ N Sbjct: 7 LGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQYG 66 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 S A S G+ T LD A++G+ +F + G +L+R G F ++++ L Sbjct: 67 ASMGAKATTTTSFAQGNLAGTTQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQL 126 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATMGLYSVDMSQGFV 170 V++ G YPV +VP + + G+++ + +V+ + LY ++ Sbjct: 127 VNSEG-YPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNTENIT 185 Query: 171 RRENSGISPNIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 N + + +V +G LE S + M ++ + + T + Sbjct: 186 PVGNQLYRAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTKAM 245 Query: 228 DENEKSMLEAIRN 240 ++ M I Sbjct: 246 QTADE-MWSVINR 257 >gi|94495411|ref|ZP_01301991.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. SKA58] gi|94424799|gb|EAT09820.1| flagellar basal-body rod protein FlgG [Sphingomonas sp. SKA58] Length = 281 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 109/277 (39%), Gaps = 41/277 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF + L+ + LS +++N++N ++ F+ K +F ++ A +++ Sbjct: 2 SFYVSLSGLKGAQADLSAISNNVANVNSTAFKKSKAQFGDIFAASPMQTTHQVAGQGVRV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 + ++++ G+ +T LD A+ G+ +F ++ G I TR+G F V +D V +G Sbjct: 62 QGITQQFTQGTIETTDKTLDLAITGEGFFTVKGEDGTISYTRNGAFSVDNDRFAVDTTGS 121 Query: 121 ----YPVLDMAS---------------VPIQIP---------QKDEIFNVGEKG---EIS 149 + V +QIP + V ++G I Sbjct: 122 RIQVFAVDPETGDLTTPPTSATGPGDLTDLQIPTTYNNEADGAQLTSVGVSKEGLVSAIY 181 Query: 150 QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG----VTVKRGFLEDS 202 G + + + S + +G ++ ++ + + P+ + +V G LE S Sbjct: 182 ADGSTVYLGQVAMASFNSLEGLRQQGDAHWTSTVESGNPILGTANQGMFGSVNSGSLERS 241 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + E+ Q+I + F + + I+ + Sbjct: 242 NVDITDELVQLIAAQRNFQANSKAIEAANTLTTTIVN 278 >gi|323490137|ref|ZP_08095357.1| flagellar hook-basal body protein [Planococcus donghaensis MPA1U2] gi|323396185|gb|EGA89011.1| flagellar hook-basal body protein [Planococcus donghaensis MPA1U2] Length = 280 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 41/280 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-VVGAIKNDIDQK---- 55 M N L+++L + +N++N +T G++ + FS+ +V +++ + QK Sbjct: 1 MNIQMNTASNTMSELQKKLDLIGNNIANVNTNGYKRQEASFSDALVLSLEKQVGQKNEVG 60 Query: 56 ---------ISFVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDGR 105 + + + + GS TG LDF ++G+ A+F + S + T+DG Sbjct: 61 RITPNGLRIGAGAILSQTAVRNDQGSIKETGRPLDFMVQGESAYFRIASDGETLYTKDGS 120 Query: 106 FKVTDDGS-----LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKV 154 F+V + LV+A+G VL + PI E + +G + S K Sbjct: 121 FQVQPILNSTQVGLVTANGD-AVLGADNQPIVFDADFENIRLNGQGTLEISYKDSDKQPT 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPL-------------EDLSGVTVKRGFLED 201 MG+ ++ + + N + + +K+ FLE Sbjct: 180 EIQMGVAQINRQDSLAKIGENRFRLNGTEAEQLANGNLQFIDLSQPNDGAIQIKQNFLEM 239 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 SN + EM ++I + F S I + M + I Sbjct: 240 SNVDLSDEMTELITTQRLFQSQGRAISYADDMMG-LVNTI 278 >gi|171321213|ref|ZP_02910183.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] gi|171093523|gb|EDT38693.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] Length = 258 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 28/256 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M F IG A + + T A N++N +T F+ V FS ++ + ++ Sbjct: 1 MNNLFYIGATGLAAQQTAVDTTAQNIANLNTPAFKRGAVTFSTLLSSGALPGARQENAAP 60 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 + G+ T D A+ + + L++P G I+L R GR +V D Sbjct: 61 AGIAGGAGVTASARPVFSPGTLRQTDDTWDLAIRSEGFVELDAPDGNIMLWRGGRLRVGD 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVD 164 DG L +++G I +P+ E + G++ + + + Sbjct: 121 DGYLRASNGV-----PLKAAISVPRDAERLEIAPDGKVLAMIPNQAAPLEVGRIEIAQAT 175 Query: 165 MSQGFVRRENSGISPNIPPT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + + P ED +G T+ +GF E SN E+ ++ + Sbjct: 176 DPRALQPLGDGTYRIADEGAAVIRSRPGEDNAG-TLAQGFSEASNVALADELAGLMLYQR 234 Query: 219 KFNSITTLIDENEKSM 234 + + L+ ++ M Sbjct: 235 AYAASAKLVQAGDELM 250 >gi|22127326|ref|NP_670749.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM 10] gi|45442797|ref|NP_994336.1| flagellar basal body rod protein FlgF [Yersinia pestis biovar Microtus str. 91001] gi|108809054|ref|YP_652970.1| flagellar basal body rod protein FlgF [Yersinia pestis Antiqua] gi|108810749|ref|YP_646516.1| flagellar basal body rod protein FlgF [Yersinia pestis Nepal516] gi|145597818|ref|YP_001161894.1| flagellar basal body rod protein FlgF [Yersinia pestis Pestoides F] gi|166212093|ref|ZP_02238128.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. B42003004] gi|167399157|ref|ZP_02304681.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167425211|ref|ZP_02316964.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229837409|ref|ZP_04457572.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A] gi|229900946|ref|ZP_04516070.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516] gi|21960407|gb|AAM87000.1|AE013948_8 putative flagellar rod protein [Yersinia pestis KIM 10] gi|45437663|gb|AAS63213.1| putative flagellar rod protein [Yersinia pestis biovar Microtus str. 91001] gi|108774397|gb|ABG16916.1| hypothetical protein YPN_0584 [Yersinia pestis Nepal516] gi|108780967|gb|ABG15025.1| hypothetical protein YPA_3063 [Yersinia pestis Antiqua] gi|145209514|gb|ABP38921.1| hypothetical protein YPDSF_0510 [Yersinia pestis Pestoides F] gi|166206839|gb|EDR51319.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. B42003004] gi|167051661|gb|EDR63069.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055974|gb|EDR65755.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682285|gb|EEO78377.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516] gi|229705532|gb|EEO91542.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A] gi|320016710|gb|ADW00282.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 243 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 17/243 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + A+N++N++T GFR + V Sbjct: 1 MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLE--KATATQVMGGGYSSRVAVL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S + S TG +LD AL+ A+ S TR+G+ V+ +G+L + +G Sbjct: 59 SQNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVSAEGAL-TING- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVRR 172 PVL PI +P ++ + G I+ + I + L + +Q +R+ Sbjct: 117 LPVLGDGG-PIVLPPY-SALSIADDGTIAIIPQAGGIKTPEEIERIKLVDIPANQ--LRK 172 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 N G+ + P V V LE SN +++ EM I L+++F + ++ E Sbjct: 173 NNRGLLVSNRG-PAARDETVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVAED 231 Query: 233 SML 235 Sbjct: 232 LAQ 234 >gi|257866397|ref|ZP_05646050.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC30] gi|257873087|ref|ZP_05652740.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC10] gi|257800355|gb|EEV29383.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC30] gi|257807251|gb|EEV36073.1| flagellar basal-body rod protein flgG [Enterococcus casseliflavus EC10] Length = 260 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 96/253 (37%), Gaps = 19/253 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------KNDIDQK 55 I + L+ L T A+N++N +T G++ F ++ N Sbjct: 7 LGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQYG 66 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 S A S G+ T LD A++G+ +F + G +L+R G F ++++ L Sbjct: 67 ASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQL 126 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATMGLYSVDMSQGFV 170 V++ G YPV +VP + + G+++ + +V+ + LY ++ Sbjct: 127 VNSEG-YPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNTENIT 185 Query: 171 RRENSGISPNIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 N + + +V +G LE S + M ++ + + T + Sbjct: 186 PVGNQLYRAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTKAM 245 Query: 228 DENEKSMLEAIRN 240 ++ M I Sbjct: 246 QTADE-MWSVINR 257 >gi|90577345|ref|ZP_01233156.1| putative flagellar basal-body rod protein [Vibrio angustum S14] gi|90440431|gb|EAS65611.1| putative flagellar basal-body rod protein [Vibrio angustum S14] Length = 243 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 105/248 (42%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + + ++ + V Sbjct: 1 MDSFLYTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVKSI--PLQGAGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 + + G I TG LD A+ GD +F +++ TR G +V + G + +G Sbjct: 59 TNSAATRFDAGDVIKTGRALDIAINGDGFFTVQTIAGNEAYTRTGNIRVDEQGMMR-VNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 +P++ + +P+ + + +KG +S + + L + D +Q ++++ Sbjct: 118 -FPLMSE-GEALVLPEY-QNVEISDKGVVSIVPLGGGAELEVGQLKLVNPDFNQ--LQKQ 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + G+ + V + G LE SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDGLLHPVNDQVFAQDPSVAMTAGHLEGSNVSAINELVSVMSLTRNFEMQVRMMKTA-ET 231 Query: 234 MLEAIRNI 241 + +A + Sbjct: 232 LAQAGTRL 239 >gi|225569955|ref|ZP_03778980.1| hypothetical protein CLOHYLEM_06050 [Clostridium hylemonae DSM 15053] gi|225161425|gb|EEG74044.1| hypothetical protein CLOHYLEM_06050 [Clostridium hylemonae DSM 15053] Length = 236 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 103/252 (40%), Gaps = 29/252 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M TSF + +L+ +++N +N +T G++ F +++ + + + Sbjct: 1 MNTSFYTASRGARTQQDKLNVISNNFANVNTYGYKAKSSVFQDLMYYNMRAGEGVATHLT 60 Query: 61 SGK-EYLSKEVGSFISTG-----TELDFALEGDAWFALESP--RGIILTRDGRFKVT--D 110 SG L +F +G D+A+ GD +F L P I TR+G F ++ Sbjct: 61 SGTGTVLDHTNTNFSQSGLGDGIGGYDYAISGDGFFMLRDPVTNEISYTRNGHFSLSRRA 120 Query: 111 DG-SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 DG LV+ S K VLD PI++ Q G + G+YS + G Sbjct: 121 DGFYLVTDSNKL-VLDEGQNPIRV----------------QGGTLQGRPGVYSFASTDGM 163 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 ++ P + G+LE SN + EM + ++ ++ + ++ Sbjct: 164 QSAGDNEFVPVAKNGAPVLNREAKLLEGYLELSNVDMAQEMANTVESSRAYSYVLKMVQS 223 Query: 230 NEKSMLEAIRNI 241 +++ + + I ++ Sbjct: 224 SDE-IEQTINSL 234 >gi|325288804|ref|YP_004264985.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964205|gb|ADY54984.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 256 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 30/251 (11%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSE------------VVGAIKNDID-QKISF 58 L+ RL V +N++N +T F+ + E + G + I + + Sbjct: 8 MNLLQSRLDMVGNNLANANTTAFKQQLLSEEEGMDTQELSKSRAMYGGVAPGIAADQTAL 67 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 G+ + + + A+ G+ +F + + G TR G F +G +V+ Sbjct: 68 PVYNGNRFDFSQGTLVQSDQPQNMAISGEGFFQVAAANGRTGYTRAGNFGPDGNGRIVNP 127 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRE 173 G L +IP+ ++G G+I+ + + + L + G + Sbjct: 128 QGLLLELGA-----EIPENASDLSIGSDGKITAVVDDELTELGQLTLARFENPHGLQQAG 182 Query: 174 NSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + P + P + G ++ G LE SN ++ M MI + + + Sbjct: 183 DDIYLETDQSGPPLTGNPGTEGFG-QIQGGMLERSNTDTAKAMSNMIEAQRAYQIEIGIT 241 Query: 228 DENEKSMLEAI 238 + ++ + EAI Sbjct: 242 KDQDQMIAEAI 252 >gi|89072314|ref|ZP_01158893.1| putative flagellar basal-body rod protein [Photobacterium sp. SKA34] gi|89051846|gb|EAR57298.1| putative flagellar basal-body rod protein [Photobacterium sp. SKA34] Length = 243 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 107/248 (43%), Gaps = 16/248 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + + ++ + V Sbjct: 1 MDSFLYTATSGASRVMKAQHVRSNNLSNADTAGFRADMERVKSI--PLQGAGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G I TG LD A+ GD +F +++ G TR G +V D G + +G Sbjct: 59 TNSAATRFDAGDVIKTGRALDIAINGDGFFTVQTVAGNEAYTRAGNIRVDDQGMMR-VNG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRRE 173 +P++ + +P+ + ++ +KG +S + + L + + +Q ++++ Sbjct: 118 -FPLMSE-GEALVLPEH-QAVDISDKGVVSIVPLGGGAELEVGQLKLVNPEFNQ--LQKQ 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + G+ + V + G LE SN +++ E+ ++ LT+ F ++ ++ Sbjct: 173 SDGLLHPVNDQFFAQDPSVAMTAGHLEGSNVSAINELVSVMSLTRNFEMQVRMMKTA-ET 231 Query: 234 MLEAIRNI 241 + +A + Sbjct: 232 LAQAGTRL 239 >gi|332162900|ref|YP_004299477.1| flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667130|gb|ADZ43774.1| Flagellar basal-body rod protein FlgF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863350|emb|CBX73473.1| hypothetical protein YEW_ES20680 [Yersinia enterocolitica W22703] Length = 243 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 21/246 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISF 58 M ++ + A+N+SN +T GFR + ++V G N Sbjct: 1 MDKLLYTAVSGANRSLTQQQIHANNLSNVNTQGFRADLERATATQVPGGGYNS----RVA 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V S + GS TG ELD A++ A+ S + TR+G+ +V DG L + + Sbjct: 57 VLSQNAGVDMTAGSLQETGRELDVAIKDRGLIAVLSGGREVYTRNGQMEVGPDGDL-TIN 115 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFV 170 G PVL I +P +V + G I+ + + + L + +Q + Sbjct: 116 G-MPVLGDGGA-IVLPAY-SAVSVADDGTIAIIPQAGGIKTPAEVDRIKLVDIPANQ--L 170 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + N G+ N D V + LE SN +++ EM I L+++F + ++ Sbjct: 171 SKNNRGLLVNRRGAAARD-ENVQLVSKHLESSNISAISEMTASISLSRQFEAQIKMMKVA 229 Query: 231 EKSMLE 236 E+ Sbjct: 230 EELAQS 235 >gi|333008281|gb|EGK27755.1| flagellar basal-body rod protein flgG [Shigella flexneri K-272] gi|333019771|gb|EGK39043.1| flagellar basal-body rod protein flgG [Shigella flexneri K-227] Length = 163 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 19/167 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 +V +G LV+A G + V I IP +G G +S + Sbjct: 121 QVDQNGQLVTA-GGFQVQPA----ITIPANALSITIGRDGVVSVTQQ 162 >gi|56551506|ref|YP_162345.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis ZM4] gi|241761150|ref|ZP_04759239.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752887|ref|YP_003225780.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543080|gb|AAV89234.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis ZM4] gi|241374769|gb|EER64230.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552250|gb|ACV75196.1| flagellar basal-body rod protein FlgF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 249 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 16/240 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A ++ A N+SNT+T GF+ + N + + Sbjct: 1 MDRLLYTSLSGMRATMRQQIATASNLSNTETPGFKKELSTQAAFWLRGGN---SSRAMAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G + TG +LD A+ GD+ A+++ G TR G +VT+ G LV+ G Sbjct: 58 QGIYSADLQKAEVQQTGRDLDLAMGGDSMIAVQAEDGSEAYTRRGDLQVTNSGVLVNGEG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSV-DMSQGFV 170 +P++ PI I D+ + + G + + + I + L S + + Sbjct: 118 -HPLVGERG-PITIGAADK-ITIDKDGTVYVILPGQNPVQPEAIDQIKLVSPSTQPRNRI 174 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + G+ + L +V+ LE+SN + MI ++ + ++ Sbjct: 175 AKGLDGLFRVVDGGTLNRDPAASVQADSLENSNVEPTQALVDMIQASRSYEQSVKMVATA 234 >gi|153946948|ref|YP_001399635.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis IP 31758] gi|152958443|gb|ABS45904.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis IP 31758] Length = 243 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 21/245 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISF 58 M ++ + A+N++NT+T GFR K ++V+G+ N Sbjct: 1 MDKLLYTAVSGANRSLSQQQIHANNLANTNTQGFRADLEKATATQVMGSGYNS----RVA 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V S + S TG +LD A++ A+ S + TR+G+ +V+ DG L + + Sbjct: 57 VLSQNAGVDMTPASLQETGRDLDIAVKNQGLIAVLSGGREVYTRNGQMEVSADGDL-TIN 115 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFV 170 G PVL PI +P ++ + G I+ + I + L + +Q + Sbjct: 116 G-LPVLGDGG-PIVLPPY-SALSIADDGTIAIIPQAGGIKTPEEIERIKLVDIPANQ--L 170 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R+ N G+ + P V V LE SN +++ EM I L+++F + ++ Sbjct: 171 RKNNRGLLVSNRG-PAARDEAVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVA 229 Query: 231 EKSML 235 E Sbjct: 230 EDLAQ 234 >gi|261341493|ref|ZP_05969351.1| flagellar basal-body rod protein FlgF [Enterobacter cancerogenus ATCC 35316] gi|288316289|gb|EFC55227.1| flagellar basal-body rod protein FlgF [Enterobacter cancerogenus ATCC 35316] Length = 243 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 14/247 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + A+N++N +T GFR + I+ + V Sbjct: 1 MDHLIYTAVSGASRSLAQQQIHANNLANVNTQGFRHDLDN--ALSQQIQGEGYASRFLVQ 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G+ TG +LD A++G AL S + TR+G+ +V +G L + G Sbjct: 59 QQQGGVDLTPGATRDTGRDLDVAIKGSGLIALVSGNREVYTRNGQIQVGPEGDL-TIDG- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATM---GLYSVDMSQGFVRREN 174 PV PI +P N+ + G IS G V A M + VD+ + ++ Sbjct: 117 LPVAGDNG-PIVLPPF-SSINIADDGVISIVPDDGNVAAPMDVDRIKLVDIPASQLSKDA 174 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 +G V + G LE SN +++ EM I L ++F + ++ E + Sbjct: 175 AGFMITNANV-NPRTEEVELVSGHLESSNVSAISEMVASIALNRQFEAQIKMMKAAED-L 232 Query: 235 LEAIRNI 241 A + Sbjct: 233 ATAGNRL 239 >gi|4378857|gb|AAD19725.1| flagellar basal-body rod protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 249 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 93/240 (38%), Gaps = 16/240 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ A ++ A N+SNT+T GF+ + N + + Sbjct: 1 MDRLLYTSLSGMRATMRQQIATASNLSNTETPGFKKELSTQAAFWLRGGN---SSRAMAS 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G + TG +LD A+ GD+ A+++ G TR G +VT+ G LV+ G Sbjct: 58 QGIYSADLQKAEVQQTGRDLDLAMGGDSMIAVQAEDGSEAYTRRGDLQVTNSGVLVNGEG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYSV-DMSQGFV 170 +P++ PI I D+ + + G + + + I + L+S + + Sbjct: 118 -HPLVGERG-PITIGAADK-ITIDKDGTVYVILPGQNPVQPEAIDQIKLFSPSTQPRNRI 174 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + G+ + L +V+ LE+SN + MI ++ + ++ Sbjct: 175 AKGLDGLFRVVDGGTLNRDPAASVQADSLENSNVEPTQALVDMIQASRSYEQSVKMVATA 234 >gi|51597636|ref|YP_071827.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis IP 32953] gi|186896770|ref|YP_001873882.1| flagellar basal body rod protein FlgF [Yersinia pseudotuberculosis PB1/+] gi|51590918|emb|CAH22574.1| putative flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis IP 32953] gi|186699796|gb|ACC90425.1| flagellar basal-body rod protein FlgF [Yersinia pseudotuberculosis PB1/+] Length = 243 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 21/245 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISF 58 M ++ + A+N++N++T GFR K ++V+G N Sbjct: 1 MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLEKATATQVMGGGYNS----RVA 56 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V S + S TG +LD AL+ A+ S + TR+G+ V+ +G+L + + Sbjct: 57 VLSQNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREVYTRNGQMDVSAEGAL-TIN 115 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFV 170 G PVL PI +P ++ + G I+ + I + L + +Q + Sbjct: 116 G-LPVLGDGG-PIVLPPY-SALSIADDGTIAIIPQAGGIKTPEEIERIKLVDIPANQ--L 170 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R+ N G+ + P V V LE SN +++ EM I L+++F + ++ Sbjct: 171 RKNNRGLLVSNRG-PAARDETVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVA 229 Query: 231 EKSML 235 E Sbjct: 230 EDLAQ 234 >gi|328470102|gb|EGF41013.1| putative flagellar basal-body rod protein [Vibrio parahaemolyticus 10329] Length = 243 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 105/246 (42%), Gaps = 12/246 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + + ++N+SN DT GFR + V ++ + V Sbjct: 1 MDSLLFTATSGASRVLKAQHVRSNNLSNADTAGFRADMERVRSV--ELQGPGFDGRTMVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + TG LD A+ G+ + A+E+P G TR G ++ G++ S +G Sbjct: 59 TNSASTRFDSADVVKTGRALDVAVMGEGYLAVETPAGNEAYTRAGNIQIDTFGAM-SING 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----KGKVIATMGLYSVDMSQGFVRRENS 175 +PV+ P+ +P + + E+G +S G IA L V +++E+ Sbjct: 118 -FPVVGENG-PLVVPDY-QKIEISERGLVSVIPPGGGAEIAVGTLKLVKPEINQLQKESD 174 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + ++ P V + +E SN +++ E+ ++ LT+ F ++ +++ Sbjct: 175 SLLHSVDGVPFAADETVQLAPEHIEGSNVSAIDELIGVMSLTRNFEMQVRMMKTA-ETLA 233 Query: 236 EAIRNI 241 +A + Sbjct: 234 QAGNKL 239 >gi|218288303|ref|ZP_03492602.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241662|gb|EED08835.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 301 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 61/298 (20%), Positives = 106/298 (35%), Gaps = 60/298 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S N ++ A + L V +N++N +TVGF+ V+F++++ + S Sbjct: 1 MLRSMNSAISGMQAFQTDLDVVGNNIANVETVGFKQSDVQFADLLSQTMSLGTAGTSPST 60 Query: 58 -------------------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI 98 V + G +TG + A++G+ +F + Sbjct: 61 GGSGATTGIGGTNPEQVGLGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTDGTST 120 Query: 99 ILTRDGRFKVTDDGSLVSASG----------------------KYPVLDMASVPIQIPQK 136 LTR G F V G+LV +G + V +A V + Sbjct: 121 YLTRAGNFSVDSAGNLVLPNGVIAEGYSSSSKPSSASTTQPTTEINVYQLAGVTLGSGNT 180 Query: 137 DEIFNVGEKGEI--------SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP----- 183 ++G G I + KVI + L V QG V ++ S + P Sbjct: 181 VSNVSIGSDGSITATITNGTTTTTKVIGYLALAQVPNPQGLVSVGDNLFSASSPAAGQPT 240 Query: 184 --TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TP + G T+ G LE SN + + +MI + + T +I + + + Sbjct: 241 YWTPGQGTYG-TLASGELEGSNVDLSQQFAEMIVAQNAYVANTHMIGTDNAILQALVN 297 >gi|172058673|ref|YP_001815133.1| flagellar basal body rod protein [Exiguobacterium sibiricum 255-15] gi|171991194|gb|ACB62116.1| flagellar basal body rod protein [Exiguobacterium sibiricum 255-15] Length = 262 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 99/266 (37%), Gaps = 31/266 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVVGAI--------- 48 M A AL+++ +++N++N T GFR + F E++ Sbjct: 1 MLRGMYTASGAMQALQRQQEMLSNNLANARTPGFRADQASLRTFPEMMIQQSGVNEQSGV 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL---EGDAWFALESPR------G 97 + + + + V + +GS TG D + EG A F + Sbjct: 61 RSRGTVGKLATGVFMQAATPNFALGSITETGNATDLQISSLEGAALFTIRHADPATGEEE 120 Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-KGKVIA 156 + T +G+F V DG L + VL A P+ + +E F V G ++ G+ I Sbjct: 121 TLYTTNGQFAVGQDGLLRTTENDL-VLGDAGQPLNV--VNEDFTVSADGAVTDGNGQAIG 177 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +GL + + R N + + V +G LE N M +M Sbjct: 178 NLGLVVTNQPETLERTGNGLFRSPD----ALNGGAIKVDQGVLELGNVEVEQTMTEMNAG 233 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 ++F + +I +++ +A+ I Sbjct: 234 LRQFEANQKVIQAYDRTAEKAVSEIG 259 >gi|325567512|ref|ZP_08144179.1| hypothetical protein HMPREF9087_0468 [Enterococcus casseliflavus ATCC 12755] gi|325158945|gb|EGC71091.1| hypothetical protein HMPREF9087_0468 [Enterococcus casseliflavus ATCC 12755] Length = 260 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 97/253 (38%), Gaps = 19/253 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------KNDIDQK 55 I + L+ L T A+N++N +T G++ F ++ N Sbjct: 7 LGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNAAQYG 66 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 S A S G+ T LD A++G+ +F + G +L+R G F ++++ L Sbjct: 67 ASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQL 126 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATMGLYSVDMSQGFV 170 V++ G YPV +VP + + G+++ + +V+ + LY ++ Sbjct: 127 VNSEG-YPVAMTTNVPTAQWPDVQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNTENIT 185 Query: 171 RRENSGISPNIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 N S + + +V +G LE S + M ++ + + T + Sbjct: 186 SVGNQLYSAGDQALLTSQTNPAAFGSVLQGQLEQSTVDLATSMTDLLTTQRAYGLNTKAM 245 Query: 228 DENEKSMLEAIRN 240 ++ M I Sbjct: 246 QTADE-MWSVINR 257 >gi|218290051|ref|ZP_03494218.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239885|gb|EED07073.1| protein of unknown function DUF1078 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 262 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 85/252 (33%), Gaps = 19/252 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M GL+ A + +ADN++N T G+ + F++++ Sbjct: 1 MGQMMWNGLSGIQAANAWIDQIADNLANLQTPGYAAEQGTFADLLTMQVYGNATDPSAAD 60 Query: 55 --------KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + V E + + TG A+EG +F +++P G + TR G F Sbjct: 61 RLTPPGWRGGTGVVRTGEERDFSQAAVVRTGIPTHLAIEGPGFFVVQTPSGRMYTRAGNF 120 Query: 107 ----KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 + L + +G PVL A I P +V G I +GL Sbjct: 121 IWSRRSDGSFVLATQAGD-PVLSAAGQLIVKPADAPSMSVARDGTIQFGRGRTVKLGLVE 179 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + E +G+ +V +G + SN + M Q++ + Sbjct: 180 IGEPSSHLIPEGNGLYRLASGGVAVPARNSSVIQGAVNASNVDETAAMAQLVAAQDFYEE 239 Query: 223 ITTLIDENEKSM 234 I + + Sbjct: 240 NAQAISMANQLL 251 >gi|260772276|ref|ZP_05881192.1| flagellar basal-body rod protein FlgG [Vibrio metschnikovii CIP 69.14] gi|260611415|gb|EEX36618.1| flagellar basal-body rod protein FlgG [Vibrio metschnikovii CIP 69.14] Length = 189 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 16/179 (8%) Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G+ +T LD +EGD +F + P G I +R+G+F + +G++V++ Y V Sbjct: 8 HTNGNVQTTNNSLDMMIEGDGFFQILMPDGNIGYSRNGQFTLNAEGAIVTSGAGYLVQPE 67 Query: 127 ASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 I +P+ VG GE+S Q+ +V+ + + G + P Sbjct: 68 ----IVVPEDAISITVGNDGEVSVRLRGQQENQVLGQITIVDFINPGGLEPVGQNLYLPT 123 Query: 181 -IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 P E + G+ +++ LE SN N E+ MI + + + +I ++ M Sbjct: 124 GASGDPQEGVPGLDGLGNIRQSMLESSNVNVTEELVNMIEAQRVYEMNSKVISSVDQMM 182 >gi|325288803|ref|YP_004264984.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964204|gb|ADY54983.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 299 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 101/294 (34%), Gaps = 56/294 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S ++ + + + +N++N +TVG++ + FS ++ + Sbjct: 1 MMRSLYSAISGLKNEQIAMDVIGNNIANVNTVGYKYSRTGFSTMLSQSMRGASAPDTADP 60 Query: 58 -------------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRD 103 A G G STG D L+G+ +F L+ G + +R+ Sbjct: 61 STYGGTDGIQIGLGSAIGSIDQIMTQGGSQSTGKNTDLMLQGEGFFMLQDSNGNVYLSRN 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMAS---------VPIQI------PQKD----EIFNVGE 144 G FK G+LV AS + V + I + P+ F + Sbjct: 121 GNFKTDGAGNLVDASTGFIVQGYENDGSDPWDTLANINLAIGRSDPEGGTNTLSSFEINS 180 Query: 145 KGEI--------SQKGK-------VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-- 187 +G I S G + + + + + G N+ + ++ Sbjct: 181 QGIIMGTFTDSDSTDGTTDPAYTVPLYQIAVATCNNPSGLTPVGNNYYQESPNSGEVKIN 240 Query: 188 ---DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + ++ G LE SN N + MI + F + + +I ++ + E + Sbjct: 241 VAGENGNRSISTGCLEMSNVNLSEQFTDMIVTQRGFQANSRVITVSDSMLQELV 294 >gi|188588515|ref|YP_001920211.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska E43] gi|188498796|gb|ACD51932.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska E43] Length = 364 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 108/357 (30%), Gaps = 122/357 (34%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ A + +L + +N++N T GF++ +F++++ + S Sbjct: 1 MLRSMYSGISGMKANQVKLDVIGNNIANVSTTGFKSSSARFTDMLYQNTSSATAPTSTKG 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESP------------- 95 V G + S G+ +STG LD ++GD + + + Sbjct: 61 GTNAKQVGLGAQLASINKVMGQGNALSTGRSLDVCIDGDGYLIVGTGPTSYGGDDGTKGG 120 Query: 96 ----RG--------IILTRDGRFKVTDDGSLVSASGKYPVL------------------- 124 G I+ TRDG + +G+L++A G + Sbjct: 121 TSIVNGSISGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGTNTSIKEGEVKDK 180 Query: 125 ------------------------------DMASVPIQIPQKDEIFNVGEKGE------- 147 P+ IP + E G Sbjct: 181 DGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQPLVIPDSVMKPKINEDGTEGDLEPV 240 Query: 148 ------ISQKGKVIATMG-----------LYSVDMSQGFVRRENSGISPNIPPTPL---- 186 I + G + A +G + S +G + + + P+ Sbjct: 241 PVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGLTSVGGNLLEASSNSGPVIVKT 300 Query: 187 ----EDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 D +G LE SN + + MI T+ F + + +I ++ + Sbjct: 301 STGTTDGDNSKGFGDFIQGALEASNVDLTEQFTDMITATRAFQASSKMISTADEILQ 357 >gi|169826609|ref|YP_001696767.1| flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] gi|168991097|gb|ACA38637.1| Flagellar hook-basal body complex protein [Lysinibacillus sphaericus C3-41] Length = 279 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 107/280 (38%), Gaps = 41/280 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 M + L+ +L T+++N++N+ T GF+ + F+E++ N+ Sbjct: 1 MLRTMMTATNTMGQLQNKLDTISNNIANSSTTGFKAKEATFNELLYQQFNNDKLDRAERQ 60 Query: 52 ---IDQKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTR 102 + S G+ +++ GS +T +LD A + +F + P G + TR Sbjct: 61 TPVGIRFGSGAMLGQIKSNQKQGSLQTTNRDLDLAFTKAKQYFNILMPNGENGTETVYTR 120 Query: 103 DGRFKVTD--DG--SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI 155 G F ++ +G LV+A G YPV + A I +P + F+V G + G +I Sbjct: 121 QGDFYLSPLNNGTVMLVTAEG-YPVANAAGQAITLPDNVQGFSVRNGGILEASYPNGDII 179 Query: 156 AT-MGLYSVDMSQGFVRRENSGISPNIPPTP-------------LEDLSGVTVKRGFLED 201 T + + Q S + + + ++ G LE Sbjct: 180 RTDLAVTEFQKPQLMEHVSGSYVGLPDNLAELGFTQAEVLTELVGANRQQIGMQGGTLEM 239 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 SN N EM ++I + + + ML I I Sbjct: 240 SNVNLSKEMTELIQTQRSYQFNARTV-TLADQMLGLINGI 278 >gi|157694039|ref|YP_001488501.1| flagellar hook-basal body protein [Bacillus pumilus SAFR-032] gi|194016453|ref|ZP_03055067.1| flagellar hook-basal body complex protein FlhP [Bacillus pumilus ATCC 7061] gi|157682797|gb|ABV63941.1| flagellar hook-basal body protein [Bacillus pumilus SAFR-032] gi|194011926|gb|EDW21494.1| flagellar hook-basal body complex protein FlhP [Bacillus pumilus ATCC 7061] Length = 272 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 111/274 (40%), Gaps = 36/274 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++++L +++N++N++T G+R +FSE++ N +D+K + VA Sbjct: 1 MLRTMINAAVSMNEVQKQLDIISNNIANSETTGYRAKNTRFSELIRQQFNQVDEKNAQVA 60 Query: 61 SGK---------------EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 + + ++ GS TG +LD A + + I TRDG Sbjct: 61 NSRLTPDGLRLGTGTMVNASINSLQGSIKETGRDLDVAFGAPSQYMQVNVGGNIRYTRDG 120 Query: 105 RFKVTDDG-----SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGK 153 + LV++ G +P+LD I + ++ + G ++ Q + Sbjct: 121 SLYLQPGNNRNQVQLVTSEG-HPILDENGNEIVLNANFRDISIDKNGRLTAISRDNQPNQ 179 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSM 207 + +G+ V+ S V ++ S + + + + +++G LE SN + Sbjct: 180 QVN-LGVVQVNNSSALVSEGDNLFSVDGTYQGALTALNGANRQAIQLQQGALETSNVDMS 238 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I ML + I Sbjct: 239 KELTDLMTTQRSYQMNSRTI-TMGDQMLGLVNTI 271 >gi|302343296|ref|YP_003807825.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301639909|gb|ADK85231.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 239 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A +RL+ A+N++N T G+ +V+ +++ G + Q Sbjct: 8 AGISGMNAAVRRLNQSANNLANISTPGYVPSRVEQADLAGGGVAVVGQ-----------T 56 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G +STG LD A++G +F L+ G + TR G F + DG LV +G+ + Sbjct: 57 ALASGPIVSTGNALDLAIDGAGYFVLQDADGNELYTRAGNFSLNADGQLVDQTGRLVQAE 116 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRRENSGISPN 180 Q PQ VG G + G + + + G + Sbjct: 117 GF----QAPQGTAQIQVGADGVVQALGADDAVLAEGQLQIATFANPGGLRAVGGNAFQAT 172 Query: 181 IPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P + + G L+ S + + EM I + F + I ++ + Sbjct: 173 DASGPAVIDAAGQPGYGAIASGALQTSGTDIVSEMVGQITAQRSFEANLKTIRTGDEMLG 232 Query: 236 EAIRNIA 242 + + Sbjct: 233 TILDIVG 239 >gi|188587648|ref|YP_001920210.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska E43] gi|188497929|gb|ACD51065.1| flagellar hook protein FlgE [Clostridium botulinum E3 str. Alaska E43] Length = 366 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 60/360 (16%), Positives = 111/360 (30%), Gaps = 126/360 (35%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N T GF++ +FS+++ ++ S Sbjct: 1 MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDMLYQNASEATAPTSTKG 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALE--------------- 93 V G + S G+ +STG LD ++GD + + Sbjct: 61 GTNAKQVGLGSQLSSINKVMGQGNALSTGRSLDVCVDGDGYIMVSKGPEVYAADKTGTGA 120 Query: 94 -----------------SPRGIILTRDGRFKVTDDGSLVSASGKYPVLD----------- 125 I+ TRDG F + +G+L++A G Y V+ Sbjct: 121 DAKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADG-YRVMGYLLKDGDDGKP 179 Query: 126 -------MASVPIQ-----------------------IPQKDEIFNVGEKG--------- 146 P+ IP K G Sbjct: 180 SVAWGEKDGDAPVANYVDADSKNLHAVGEGAQLNTLKIPDKVLAPKRDPDGKPTAEFVEV 239 Query: 147 -----EISQKGKVIATMG-----------LYSVDMSQGFVRRENSGI------SPNIPPT 184 I + G + A +G + + +G + + P I T Sbjct: 240 PVKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEGLTSIGGNLLQTSPNSGPEIIKT 299 Query: 185 PLEDLSG---------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P+ L+ +G LE SN + + MI T+ F + + +I ++ + Sbjct: 300 PVGKLATDFSDNSKGFGEFVQGALESSNVDLTEQFTDMITATRAFQASSKMITTGDEILQ 359 >gi|289804043|ref|ZP_06534672.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 179 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 17/183 (9%) Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G+ T D A++G +F + P G TRDG F+V +G LV+A G Sbjct: 1 SQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQV----- 55 Query: 128 SVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVR-RENSGISPN 180 I IP +G G +S + + + L + G EN I Sbjct: 56 QPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYIETQ 115 Query: 181 IPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P E G+ + +G++E SN N E+ MI + + + + + ++ + + Sbjct: 116 SSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQK 175 Query: 237 AIR 239 + Sbjct: 176 LTQ 178 >gi|218677554|ref|ZP_03525451.1| flagellar basal body rod protein FlgG [Rhizobium etli CIAT 894] Length = 205 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 19/197 (9%) Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 V + G TG +LD AL G +F ++S G + TR G F D G LV+ Sbjct: 14 GVQTSAVRNLHLQGELTQTGNDLDVALIGKGFFQIQSTDGTTLYTRAGAFNKNDQGQLVT 73 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGF- 169 G Y VL I IP + GE+S K + + L G Sbjct: 74 VDG-YEVLPG----ITIPTGSTELTISRSGEVSAKLPGATSATTLGQLTLADFVNEAGLQ 128 Query: 170 -----VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + +E + + P E+ +K+G+LE SN + + E+ ++I + + + Sbjct: 129 PIGDNLFQETAASGDAVVGNPDEEGF-AYMKQGYLESSNVDPVKEITELISAQRAYEMNS 187 Query: 225 TLIDENEKSMLEAIRNI 241 +I ++ +N+ Sbjct: 188 KVITTADEMASIVSKNL 204 >gi|17989452|ref|NP_542085.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 1 str. 16M] gi|256043051|ref|ZP_05445996.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1 str. Rev.1] gi|260564283|ref|ZP_05834768.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|265989489|ref|ZP_06102046.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1 str. Rev.1] gi|17985331|gb|AAL54349.1| flagellar basal-body rod protein flgf [Brucella melitensis bv. 1 str. 16M] gi|260151926|gb|EEW87019.1| flagellar basal body rod protein [Brucella melitensis bv. 1 str. 16M] gi|263000158|gb|EEZ12848.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1 str. Rev.1] Length = 173 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 5/165 (3%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 MQ S +GL++ + LE+R+ +A N++N TVGFR KF +V +D +SF Sbjct: 1 MQNNSIYVGLSSLITLERRMDAIAHNVANASTVGFRGEGTKFDTIVSDKASD---DVSFA 57 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +GK Y+ E G I T LD A++GDAW + +P+G + +RDGR K+ G VS +G Sbjct: 58 TAGKSYIRTEAGPLIKTDNPLDVAVKGDAWMSFSTPQGQVYSRDGRMKMLSTGDPVSVTG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 +LD+ PI + + G I Q G + +GLY++ Sbjct: 118 N-AILDVGGAPIVLNPGGGAPRISSDGAIYQNGVQVGAIGLYTIP 161 >gi|153953785|ref|YP_001394550.1| hypothetical protein CKL_1160 [Clostridium kluyveri DSM 555] gi|219854401|ref|YP_002471523.1| hypothetical protein CKR_1058 [Clostridium kluyveri NBRC 12016] gi|146346666|gb|EDK33202.1| FlgE [Clostridium kluyveri DSM 555] gi|219568125|dbj|BAH06109.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 348 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 116/345 (33%), Gaps = 106/345 (30%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S G++ A +Q+L+ + +N++N+ T ++T + F +++ +D Sbjct: 1 MLPSMYSGISGLRANQQKLNVIGNNIANSSTTAYKTQSMNFQDMISQNLSDPSAPSTSIG 60 Query: 54 -----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL------ESPRGII--- 99 Q V GS +T LDFA++G +F + E+ Sbjct: 61 GVNGKQSGLGVQVAGISTDFTTGSMGTTNRNLDFAIDGTGYFVVGTGKLGETSDDTGISI 120 Query: 100 ---------------------LTRDGRFKVTDDGSLVSASGK----YPVLDMAS------ 128 +RDG F + G+L++ +G Y V D + Sbjct: 121 DEDNNILGGGDNEVENTIEAHYSRDGSFYLDTQGNLINQNGYRVMGYLVTDENNTSTITY 180 Query: 129 -----------------------------VPIQIPQ---------KDEIFNVGEKGEISQ 150 VP+ IP K + F+VG+ G I+ Sbjct: 181 LQNDTEDTFQNAVQFVDANGTVTSVTDKLVPLSIPNYITKDDQLVKVKSFSVGKDGIITA 240 Query: 151 -----KGKVIATMGLYSVDMSQGFVRRENSGISPN--------IPPTPLEDLSGV---TV 194 V+ + + S G V+ + + + + E+ + + Sbjct: 241 QLTDSTTAVLGQIAMVSFQNEGGLVKEGGNLYTTSSNSGQPIVMSGKGAENDNSAGYGKI 300 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +GFLE SN + + MI T+ F + +I + + + I Sbjct: 301 TQGFLEMSNVDLAQQFTDMIVATRAFQANGKMITNGDTILEDLIN 345 >gi|78485811|ref|YP_391736.1| hypothetical protein Tcr_1470 [Thiomicrospira crunogena XCL-2] gi|78364097|gb|ABB42062.1| Flagellar basal-body rod protein FlgF [Thiomicrospira crunogena XCL-2] Length = 245 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 17/209 (8%) Query: 31 TVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 T GF+ +F ++ ++ + G+ TG +LD + + + Sbjct: 31 TDGFKQDFNQFRA--QHVQGPGWNSRTYSLDERPATDFAPGAVKVTGRDLDIMTKENGFL 88 Query: 91 ALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 A+++P G LTR + +G L+ G PVL+ PI IP + +G G IS Sbjct: 89 AIQAPDGSEALTRSASMHLNPEGDLLDVHGN-PVLNEGGAPINIPP-AKSIQIGSDGTIS 146 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLED 201 V+ + L D+ Q + + G N LE + V G LE Sbjct: 147 FIPADSTNNLAVVLDQVRLVQPDIKQ--LEKGLDGYIRN-NGAELEQAP-IRVVSGALES 202 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDEN 230 SN N++ + MI L++K+ ++ + Sbjct: 203 SNVNTVEALTNMIELSRKYEMQIKMMSTS 231 >gi|331005470|ref|ZP_08328849.1| hypothetical protein IMCC1989_1994 [gamma proteobacterium IMCC1989] gi|330420746|gb|EGG95033.1| hypothetical protein IMCC1989_1994 [gamma proteobacterium IMCC1989] Length = 245 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 103/247 (41%), Gaps = 10/247 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKND---IDQK 55 + +I + Q+L ++ N++N T ++ F+ V ++ Sbjct: 1 MDAISISAISMQNDLQKLDQLSHNVANMSTPAYKRTLSATESFTNTVSRFESPNRVASTI 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 + + + GS ST LD A+EGD +F L + G ++ G F + ++G V Sbjct: 61 QNAIPTISTSRDFTTGSLSSTSNPLDLAIEGDGFFELTNNTGTFYSKRGNFLIDNNGQ-V 119 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 SG +L+ S I++ +D + G+I + GK ++ + + + D + Sbjct: 120 KLSGTELLLNGVSGDIRL--QDAEPEINSLGQIFENGKEVSQIRVINFDNPSSLISLG-Q 176 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 GI + +++ ++++ FLE SN+ +M +I L + + +I + + Sbjct: 177 GIFKVSEASVQKEVELPSIRQSFLEASNSQPAEDMLNLIQLARHIEATQQVIRGYDGMLA 236 Query: 236 EAIRNIA 242 ++ Sbjct: 237 TVFEDLG 243 >gi|251780952|ref|ZP_04823872.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085267|gb|EES51157.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 364 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 108/357 (30%), Gaps = 122/357 (34%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ A + +L + +N++N T GF++ +F++++ + S Sbjct: 1 MLRSMYSGISGMKANQVKLDVIGNNIANVSTTGFKSSSARFTDMLYQNTSSATAPTSTKG 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESP------------- 95 V G + S G+ +STG LD ++GD + + + Sbjct: 61 GTNAKQVGLGAQLASINKVMGQGNALSTGRSLDVCVDGDGYLIVGTGPASYGGDDGTKGG 120 Query: 96 ----RG--------IILTRDGRFKVTDDGSLVSASGKYPVL------------------- 124 G I+ TRDG + +G+L++A G + Sbjct: 121 TSIVNGSISGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGTNTSIKEGEVKDK 180 Query: 125 ------------------------------DMASVPIQIPQKDEIFNVGEKGE------- 147 P+ IP + E G Sbjct: 181 DGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQPLVIPDSVMKPKINEDGTEGDLEPV 240 Query: 148 ------ISQKGKVIATMG-----------LYSVDMSQGFVRRENSGISPNIPPTPL---- 186 I + G + A +G + S +G + + + P+ Sbjct: 241 PVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGLTSVGGNLLEASSNSGPVIVKT 300 Query: 187 ----EDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 D +G LE SN + + MI T+ F + + +I ++ + Sbjct: 301 STGTTDGDNSKGFGDFIQGALEASNVDLTEQFTDMITATRAFQASSKMISTADEILQ 357 >gi|330893070|gb|EGH25731.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. mori str. 301020] Length = 202 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 26/186 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------------QKI 56 A + L+T+++N++N T GF++ + +F +++ IK Q Sbjct: 22 TGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDSELPSGLQLG 81 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 + V + GS +T LD A+ G +F + P G +RDG F + +G +V Sbjct: 82 TGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTVAYSRDGTFHLDANGQIV 141 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-------KGKVIATMGLYSVDMSQG 168 +A+G I +PQ + F VG+ G +S ++I + G Sbjct: 142 TANGY-----ALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAG 196 Query: 169 FVRREN 174 Sbjct: 197 LQAIGG 202 >gi|251780251|ref|ZP_04823171.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084566|gb|EES50456.1| flagellar hook protein FlgE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 366 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 110/360 (30%), Gaps = 126/360 (35%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N T GF++ +FS+++ ++ S Sbjct: 1 MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDMLYQNASEATAPTSTKG 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALE--------------- 93 V G + S G+ +STG LD ++GD + + Sbjct: 61 GTNAKQVGLGSQLSSINKVMGQGNALSTGRSLDVCVDGDGYIMVSKGPEVYAADKTGTGA 120 Query: 94 -----------------SPRGIILTRDGRFKVTDDGSLVSASGKYPVLD----------- 125 I+ TRDG F + +G+L++A G Y V+ Sbjct: 121 DAKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADG-YRVMGYLLKDGDDGKP 179 Query: 126 -------MASVPIQ-----------------------IPQKDEIFNVGEKG--------- 146 P+ IP K G Sbjct: 180 SVAWGEKDGDAPVANYVDADSKNLHAVGEGAQLNTLKIPDKVLAPKRDADGKPTAEFVEV 239 Query: 147 -----EISQKGKV-----------IATMGLYSVDMSQGFVRRENSGI------SPNIPPT 184 I + G + + + + + +G + + P I T Sbjct: 240 PVKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEGLTSIGGNLLQTSPNSGPEIIKT 299 Query: 185 PLEDLSG---------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P+ L+ +G LE SN + + MI T+ F + + +I ++ + Sbjct: 300 PVGKLATDFTDNSKGFGEFVQGALESSNVDLTEQFTDMITATRAFQASSKMITTGDEILQ 359 >gi|187935288|ref|YP_001885050.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund 17B] gi|187723441|gb|ACD24662.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund 17B] Length = 364 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/357 (15%), Positives = 108/357 (30%), Gaps = 122/357 (34%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + + +L + +N++N T GF++ +F++++ + S Sbjct: 1 MLRSMYSGISGMKSNQVKLDVIGNNIANVSTTGFKSSSARFTDMLYQNVSSATAPTSTKG 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALES-------------- 94 V G + S G+ +STG LD ++GD + + + Sbjct: 61 GTNAKQVGLGSQLASINKVMGQGNALSTGRSLDVCIDGDGYLIVGTGPASYGGDDGTKGG 120 Query: 95 --------PRG---IILTRDGRFKVTDDGSLVSASGKYPVL------------------- 124 G I+ TRDG + +G+L++A G + Sbjct: 121 TSIVNGSINGGDMDILYTRDGNLTLDHEGNLLTADGYRVMGYYLTDGTNTSIKEGEVKDK 180 Query: 125 ------------------------------DMASVPIQIPQKDEIFNVGEKGE------- 147 P+ IP + E G Sbjct: 181 DGNVIGTKPEANFVDADKKPTAVGAVDGKSGGTLQPLVIPDSVMKPKINEDGTEGDLEPV 240 Query: 148 ------ISQKGKVIATMG-----------LYSVDMSQGFVRRENSGISPNIPPTPL---- 186 I + G + A +G + S +G + + + P+ Sbjct: 241 PVKSFSIGKDGVITAVLGDGSRAALGQVAMGSFKNPEGLTSVGGNLLEASSNSGPVIVKT 300 Query: 187 ----EDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 D +G LE SN + + MI T+ F + + +I ++ + Sbjct: 301 STGTTDGDNSKGFGDFIQGALEASNVDLTEQFTDMITATRAFQASSKMISTADEILQ 357 >gi|302387772|ref|YP_003823594.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] gi|302198400|gb|ADL05971.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] Length = 256 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 18/257 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----IKNDIDQK 55 M+ SF IG L + +L V++N++N +TVGF+ FS++V A N+ + Sbjct: 1 MEQSFYIGALGALGQQTKLGIVSNNVANVNTVGFKAQYSVFSDLVHAEMRNTQGNNGAKS 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVT---D 110 S + + TG E D+A+ G+ +F L+ P + +RDGRF+++ D Sbjct: 61 GSGTKVDQTKTDFSAMPYKETGLEHDYAIAGEGFFMLKDPVTGEVSYSRDGRFQLSRMED 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIP------QKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 LV++ VL+M I E E+ E+ + +G+Y+ Sbjct: 121 KFYLVNSD-NKRVLNMDQEEISYDVKPATYPGSEEETEEEETELEEGEHDPRAIGVYTFA 179 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 G + ++ S L V + LE+S + EM +MI + ++ Sbjct: 180 RRDGMESQGDNVFSVTEKNGEPILLENAKVVKRALEESGVDFAQEMTRMIEAQRAYSYAL 239 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +++ + I + Sbjct: 240 KMVQTSDE-VEATINTL 255 >gi|187932866|ref|YP_001885049.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund 17B] gi|187721019|gb|ACD22240.1| flagellar hook protein FlgE [Clostridium botulinum B str. Eklund 17B] Length = 366 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 109/360 (30%), Gaps = 126/360 (35%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M S G++ + +L + +N++N T GF++ +FS+++ + S Sbjct: 1 MLRSMYSGISGMKTNQVKLDVIGNNIANVSTTGFKSSSARFSDMLYQNAGEATAPTSTKG 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALE--------------- 93 V G + S G+ +STG LD ++GD + + Sbjct: 61 GTNAKQVGLGAQLSSINKVMGQGNALSTGRSLDVCVDGDGYIMVSKGPEVYAGDKTGTGA 120 Query: 94 -----------------SPRGIILTRDGRFKVTDDGSLVSASGKYPVLD----------- 125 I+ TRDG F + +G+L++A G Y V+ Sbjct: 121 DTKNTIGISTSGKLTGGGENEILYTRDGNFTLDHEGNLLTADG-YRVMGYLLKDGDDGKP 179 Query: 126 -------MASVPIQ-----------------------IPQKDEIFNVGEKG--------- 146 P+ IP K G Sbjct: 180 SVAWGEKDGDAPVANYVDADSKNLHAVGEGAQLNTLKIPDKVLAPKRDPDGKPTAEFVEV 239 Query: 147 -----EISQKGKV-----------IATMGLYSVDMSQGFVRRENSGI------SPNIPPT 184 I + G + + + + + +G + + P I T Sbjct: 240 PVKSFSIGKDGVITAVLGDGSRTALGQVAMATFKNPEGLTSIGGNLLQTSPNSGPEIIKT 299 Query: 185 PLEDLSG---------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P+ L+ +G LE SN + + MI T+ F + + +I ++ + Sbjct: 300 PVGKLATDFSDNSKGFGEFVQGALESSNVDLTEQFTDMITATRAFQASSKMITTGDEILQ 359 >gi|319650827|ref|ZP_08004964.1| FlhP protein [Bacillus sp. 2_A_57_CT2] gi|317397425|gb|EFV78126.1| FlhP protein [Bacillus sp. 2_A_57_CT2] Length = 275 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 109/269 (40%), Gaps = 36/269 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L++++ V+ N++N DT G++ + F++++ N+ + A Sbjct: 1 MNRTMITATNTLAQLQKQMDIVSHNVANIDTAGYKRREANFTDLLFQQFNNQRNPNAETA 60 Query: 61 --------------SGKEYLSKEVGSFISTGTELDFALEGDA-WFAL--ESPRG--IILT 101 + + + G+ +T LD A + +F + ++ G + T Sbjct: 61 RLTPAGIRQGVGAKLAQSQIVMKQGALKATERPLDLAFTKEGQYFRVLEQTEEGAAVRFT 120 Query: 102 RDGRFKV----TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKV 154 R G F + ++ LV+ G PVLD + I I + + F V E G + G + Sbjct: 121 RTGAFYLTPVSDNETMLVTGDG-LPVLDENNNSIIINGQAKNFKVTETGSFLAETANGSI 179 Query: 155 IA-TMGLYSVDMSQGFVRRENS--GISPNIPPTPLEDLSGVTVK------RGFLEDSNAN 205 +G+ ++ Q ++ ++ G+ + + ++ +G LE SN + Sbjct: 180 QEFNLGVVLINKPQFLEQKGDNLLGLPDGVDGEGIYTELNGALRGQIGMAQGSLEQSNVD 239 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSM 234 EM +I+L + + + + ++ M Sbjct: 240 MSKEMTDLINLQRAYQFQSRSVSMADQMM 268 >gi|251779966|ref|ZP_04822886.1| flagellar hook-basal body complex protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084281|gb|EES50171.1| flagellar hook-basal body complex protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 257 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 106/259 (40%), Gaps = 20/259 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV----------GA 47 M F ++ + LE TV +N+ N + G++ + F +V+ Sbjct: 1 MIRGFYTAVSGLITLENEQQTVTNNIVNVNNNGYKKNTLTKQSFEDVLITNRQNKVGDRH 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I N + V G+F +T + DF ++G +FA++ + TR G FK Sbjct: 61 IPNKLGNLNFGVKVNDVSTIYTQGAFKATDSYTDFGIDGRGFFAVQRGNERLFTRSGDFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKGKVIATMGLYSVD 164 + G L++ +G+Y + + + P G S G+ T+ + Sbjct: 121 IDQQGYLITGNGEYVLGRNNATGAEEPIYVGKDEFSLDGNNKLQSATGESTYTLLTADFE 180 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + ++ S N P+ + V V++G LE SN N E+ +++ + ++F + Sbjct: 181 DYKSLEKLGDNYYSAN---NPIYNAV-VNVRQGVLETSNVNPTEELVKLMEIKRQFETNQ 236 Query: 225 TLIDENEKSMLEAIRNIAS 243 + ++++ +A I S Sbjct: 237 KFVSMQDETVQKAANEIGS 255 >gi|188590007|ref|YP_001920227.1| flagellar basal body rod protein FlgG [Clostridium botulinum E3 str. Alaska E43] gi|188500288|gb|ACD53424.1| flagellar hook-basal body complex protein [Clostridium botulinum E3 str. Alaska E43] Length = 257 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 105/259 (40%), Gaps = 20/259 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV----------GA 47 M F ++ + LE TV +N+ N + G++ + F +V+ Sbjct: 1 MIRGFYTAVSGLITLENEQQTVTNNIVNVNNNGYKKNTLTKQSFEDVLITNRQNKVGDRH 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I N + V G+F +T + DF ++G +FA++ + TR G FK Sbjct: 61 IPNKLGNLNFGVKVNDVSTIYTQGAFKATDSYTDFGIDGRGFFAVQRGNERLFTRSGDFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKGKVIATMGLYSVD 164 + G L++ +G Y + + + P G S G+ T+ + Sbjct: 121 IDQQGYLITGNGDYVLGRNNATGAEEPIYVGKDEFSLDGNNKLQSATGESTYTLLTADFE 180 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + + ++ S N P+ + V V++G LE SN N E+ +++ + ++F + Sbjct: 181 DYKSLEKLGDNYYSAN---NPIYNAV-VNVRQGVLETSNVNPTEELVKLMEIKRQFETNQ 236 Query: 225 TLIDENEKSMLEAIRNIAS 243 + ++++ +A I S Sbjct: 237 KFVSMQDETVQKAANEIGS 255 >gi|291562027|emb|CBL40843.1| fagellar hook-basal body proteins [butyrate-producing bacterium SS3/4] Length = 305 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 103/303 (33%), Gaps = 65/303 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ A + +L + +N++N +T GF++ F E + K S A Sbjct: 1 MLRAMDSAVSGLRAHQNKLDVIGNNIANVNTFGFKSQSYSFKEAMYQTST-TSTKGSENA 59 Query: 61 SGKEYLSKEVGSF---ISTGTE---------LDFALEGDAWF--------ALESPR---- 96 G GS IST L+ +++G+ +F + Sbjct: 60 GGVNAAQYGYGSMMGSISTDMSASTPTYVGGLNASVDGEGFFITFPKSTETVTVADMKKT 119 Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVL------------DMASVPIQIPQKD------- 137 TR G+F + +G L A+G + D V I++P Sbjct: 120 DFDYTRVGQFNIDGNGYLTDANGNFVYGFRPDAVDKPTKFDGDLVAIKVPSDVTGADFDD 179 Query: 138 ----EIFNVGEKGEISQ---------KGKVI--ATMGLYSVDMSQGFVRRENSGISPNIP 182 + GEIS GK + + + + +G ++ + Sbjct: 180 PLQLTNVKINSLGEISGTVKSTDPDKDGKTVSIGKVAIATFQNPEGLSKKGSFYYGAAES 239 Query: 183 PTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 S ++ G+LE SN + E MI + F + + +I +++ + + Sbjct: 240 DNSGNASATIPGGSTSSLMTGYLEASNVDLAKEFSDMITTQRGFQANSKIITVSDEILSD 299 Query: 237 AIR 239 I Sbjct: 300 LIN 302 >gi|119947176|ref|YP_944856.1| flagellar basal-body rod protein FlgF [Psychromonas ingrahamii 37] gi|119865780|gb|ABM05257.1| flagellar basal-body rod protein FlgF [Psychromonas ingrahamii 37] Length = 243 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 93/251 (37%), Gaps = 19/251 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L A+NM+ +T+GF+ + V D Sbjct: 1 MNPILFTAATSASKLMISQHVRANNMAQVNTIGFKAVLE--RTVPVFRTGDGFLSSVTSR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL-VSAS 118 S + G TG LD A+ GD +FA+ G TR G K + DG L V+ + Sbjct: 59 SNSTSIDFSHGKLSQTGRPLDVAITGDGFFAVRGNDGKESYTRAGNIKASADGELSVNNN 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVRR 172 +L + +P+ + + KG I+ + + L + D ++ + Sbjct: 119 ---ALLGTGGEQLVLPEH-QSLTISNKGIITVMSNGGGASIEVGQIKLVNPDTNKLTLNT 174 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 PLE V + +LE +N + + EM ++ T+++ ++ ++ Sbjct: 175 SG----TFSSAVPLEASPDVEMTSEYLESANVSVISEMIGVMTATRQYEMQVKMMKAADQ 230 Query: 233 SMLEAIRNIAS 243 ++ A + S Sbjct: 231 -LIAAGNKLIS 240 >gi|226315011|ref|YP_002774907.1| flagellar basal-body rod protein [Brevibacillus brevis NBRC 100599] gi|226097961|dbj|BAH46403.1| flagellar basal-body rod protein [Brevibacillus brevis NBRC 100599] Length = 329 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 64/327 (19%), Positives = 116/327 (35%), Gaps = 87/327 (26%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKND------ 51 M + LAL+ R ++A+N++N +T GF+ F E + + ND Sbjct: 1 MIRGLYTSASGMLALQNRQESLANNLANINTPGFKQDVGVMRAFPEQLLSRMNDKEGLDV 60 Query: 52 ------------IDQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDA----- 88 I + + V + + G T D AL + + Sbjct: 61 PGIPTMPGQPAIIGRLNTGVYMSEALPNFAQGDIEETRNPYDLALMDNIQPDQNGNERRL 120 Query: 89 WFALE-----------SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ++++ I TR+G + V DG LV+A G Y VLD ++ I+I Sbjct: 121 FYSVARIEQANLAQPAQQEDIRYTRNGNWSVNSDGYLVTAEGYY-VLDSSNQAIRINHDP 179 Query: 138 EIFN-VGEKGEISQKGKVI-------------------ATMGLYSVDMSQGFVRRENS-- 175 + VG+ +IS++G+++ A +GL V Q VR + Sbjct: 180 TLGTNVGQNLKISERGELMQVTIDPITKAEQYTALPTHARLGLAVVTDPQKLVREGTNVF 239 Query: 176 --------------------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 I+ TP T ++G+ E SN + M M+ Sbjct: 240 RFEGDIAVEGIDLAEANDQAAITAGTYNTPTVVGRFGT-QQGWRERSNVDPAQTMTSMMS 298 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + + +I + ++ +A I Sbjct: 299 VLRAYEANQRVITTIDGTLEKAANEIG 325 >gi|27464953|gb|AAN63050.1| flagellar component FlgF [Vibrio vulnificus] Length = 193 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 13/197 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ Q L A+N++N T GFR + + A + ++ F Sbjct: 1 MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSM-QAYGEGLPTRV-FSM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + + GS I+TG +LD +EG+ W + G LTR+G KV +G L +ASG Sbjct: 59 TERPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 + VL PI IP +G G IS + I + L + Sbjct: 119 -HLVLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEEIDRIKLVK-TNDSALFK 176 Query: 172 RENSGISPNIPPTPLED 188 N P P E Sbjct: 177 DTNGLFRHKEPNQPYEA 193 >gi|300854216|ref|YP_003779200.1| putative flagellar hook protein FlgE [Clostridium ljungdahlii DSM 13528] gi|300434331|gb|ADK14098.1| predicted flagellar hook protein FlgE [Clostridium ljungdahlii DSM 13528] Length = 323 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 109/323 (33%), Gaps = 87/323 (26%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ +Q+L+ +DN++N+ T GF++ + F +++ +D + Sbjct: 1 MLPSLYTAISGLRVNQQKLNVTSDNIANSSTTGFKSKNMIFEDMLSQNLSDPSAPVDGGL 60 Query: 61 SGKEY-------------LSKEVGSFISTGTELD-FALEGDAWFALESPRGI-------- 98 G GS +T LD A +G ++F + SP G Sbjct: 61 GGINARQSGLGVKVAGINTDFTAGSSQTTNRSLDFMANKGGSYFVV-SPDGDVSNANGGN 119 Query: 99 ---------ILTRDGRFKVTDDGSLVSASGKYPVL---------------DMASVPIQIP 134 TRDG F + + G+L++ G + + + I P Sbjct: 120 ASDTTSKSYYYTRDGAFTLDEAGNLLTQDGYHVMGYNVDDKTGAITDTASGTDTSNIVPP 179 Query: 135 ---------------------------QKDEIFNVGEK-GEISQKGKV----IATMGLYS 162 +K ++VG G I+ K + + + L S Sbjct: 180 KCLQIAQYYTKDGAVDTAPQDQTTADNEKVTSWSVGPSTGIITVKTALGSHQVGRIALAS 239 Query: 163 VDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 G V+ + TP + ++ +G LE SN + + MI Sbjct: 240 FQNEGGLVKDGGNLYESSPNSGDAAYGTPGTNYG--SLNQGALEMSNVDLAQQFTDMIVA 297 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 T+ F + +I ++ + + + Sbjct: 298 TRAFQANGKIITTDDTILEDLVN 320 >gi|253702499|ref|YP_003023688.1| hypothetical protein GM21_3913 [Geobacter sp. M21] gi|251777349|gb|ACT19930.1| protein of unknown function DUF1078 domain protein [Geobacter sp. M21] Length = 294 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 100/288 (34%), Gaps = 52/288 (18%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G++ L + ++ + +N+SN +T+G++ + FS+++ + Q V Sbjct: 5 SALYTGVSGLLQNGEAMNVIGNNISNVNTIGYKGARTLFSDMLSQNVGNNSQIGKGVQMQ 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFA---------LESPRGIILTRDGRFKVTDDGS 113 GS S+ D A++G+++FA + L+R G F+ + Sbjct: 65 VVQNVFSQGSTQSSENVTDLAIQGNSFFALKPSTAAAPVARQSDAFLSRAGAFQTDSNLY 124 Query: 114 LVSASGKYPVLDMASVPIQI--------PQKDEIFNVGEKGEIS---------------- 149 LV+ G Y VLD A PIQ ++ ++ G I+ Sbjct: 125 LVNPDG-YQVLDTAGNPIQFLDTKAAPTTDFGKVLSIDNTGLITYLATDGITQNYYSASG 183 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP----------PTPLEDLSG 191 + + + + G + S + Sbjct: 184 AVGVATTPAAATAAEKIAVVTAADTTGLKKVGGSLYQATTDAGVSTAAFSQAANKPNGVS 243 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ LE S + E +MI + +++ + I +++ E + Sbjct: 244 ETILSNTLEQSTVDLANEFVKMITTQRAYSANSKTITTSDQMTQEVLN 291 >gi|15616299|ref|NP_244604.1| flagellar hook-basal body protein [Bacillus halodurans C-125] gi|10176361|dbj|BAB07456.1| flagellar hook-basal body protein [Bacillus halodurans C-125] Length = 280 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 102/273 (37%), Gaps = 40/273 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------- 50 M S L+++L T++ N++N++T G++ + FS+++ N Sbjct: 1 MNLSMISASVTMGELQKKLDTLSHNIANSNTTGYKRREASFSDLLFQQVNTNKATQYETG 60 Query: 51 ----DIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESP-RG---IILT 101 + + S + L E G+ +T LDFA+ ++F +E+ G LT Sbjct: 61 RLTPNGIRVGSGAKVSQTALRMEQGTLTTTDRALDFAIANPSSFFEIETVVDGNPVTRLT 120 Query: 102 RDGRFKVTDDG------SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK---- 151 RDG F +T + LV+ +G Y +LD A I IP E + ++G + Sbjct: 121 RDGAFYLTANPNNDNLLQLVTQNGDY-LLDSAGNRINIPATFEEITLTDQGTLQVTMPNG 179 Query: 152 -GKVIATMGLYSVDMSQGFVRRENSGI---------SPNIPPTPLEDLSGVTVKRGFLED 201 A + L V Q + G V +G LE Sbjct: 180 ANVQAAQLQLIQVMKPQLLEAVGGNMFQLPDLAALGFAENEVYAAVGAGGGAVVQGTLEG 239 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 SN + EM +I + + + ++ M Sbjct: 240 SNVDIGREMTDLIETQRNYQFNARSVSMADQMM 272 >gi|170750088|ref|YP_001756348.1| hypothetical protein Mrad2831_3689 [Methylobacterium radiotolerans JCM 2831] gi|170656610|gb|ACB25665.1| protein of unknown function DUF1078 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 263 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 21/256 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 T+ + ++ A L+ ++ N++NT TVGF++ + +F++++ + + S Sbjct: 5 TALSNSISGASAQSLALNNISGNIANTQTVGFKSTETRFADMLAETGDSTQLAGGVLPST 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI----------ILTRDGRFKVTDDG 112 + L+ G+ STG + A+ G+ +F ++ G TR G F G Sbjct: 65 RNSLNI-QGTMQSTGVSTNLAISGNGYFIVKKNTGTPDSPAFGGDTGYTRRGDFAPDASG 123 Query: 113 SLVSASGKYPVLDM-ASVPIQIPQKDE---IFNVGEKGEISQKGK-----VIATMGLYSV 163 L + +G Y A+ P+Q+P V G ++ + T+ L Sbjct: 124 YLSNGAGYYLFAGPSATTPVQVPTGASTLASLAVSPAGTLTGTAADGSTLALGTLQLAQF 183 Query: 164 DMSQGFVRR-ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 M + ++ TP L+G TV G +E SNA + +MI Q + + Sbjct: 184 GMQDNLASLDGGTYVATGQSGTPSYGLNGATVTAGSVEQSNAGISDQFSKMIETQQAYTA 243 Query: 223 ITTLIDENEKSMLEAI 238 T ++ ++ + +AI Sbjct: 244 NTKVMSTTDQMLQDAI 259 >gi|257871308|ref|ZP_05650961.1| flagellar basal-body rod protein flgG [Enterococcus gallinarum EG2] gi|257805472|gb|EEV34294.1| flagellar basal-body rod protein flgG [Enterococcus gallinarum EG2] Length = 260 Score = 151 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 96/253 (37%), Gaps = 19/253 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------KNDIDQK 55 I + L+ L T A+N++N +T G++ F ++ N Sbjct: 7 LGISRSGLNHLQTNLDTTANNIANVNTNGYQAQTTHFQALMENAIGAEETLFNGNTAQYG 66 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 S A S G+ T LD A++G+ +F + G +L+R G F ++++ L Sbjct: 67 ASMGAKATTTTSFAQGNLAGTAQPLDLAIQGNGFFGVRDQTGQLLLSRAGNFHLSENKQL 126 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATMGLYSVDMSQGFV 170 V++ G YPV +VP + + G+++ + +V+ + LY ++ Sbjct: 127 VNSEG-YPVAMTTNVPTPQWPDAQQIAIDASGQLTTEENGQTRVLGQLTLYQPTNTENIT 185 Query: 171 RRENSGISPNIPP---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 N S + + +V +G L S + M ++ + + T + Sbjct: 186 PVGNQLYSAGDQALLTSQTNPAAFGSVLQGQLVQSTVDLATSMTDLLTTQRAYGLNTKAM 245 Query: 228 DENEKSMLEAIRN 240 ++ M I Sbjct: 246 QTADE-MWSVINR 257 >gi|157147101|ref|YP_001454420.1| flagellar basal body rod protein FlgF [Citrobacter koseri ATCC BAA-895] gi|157084306|gb|ABV13984.1| hypothetical protein CKO_02878 [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 17/240 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + A+N++N +T GFR+ + + + Sbjct: 1 MDRLIFTAMSGASRSLSQQQIHANNLANVNTQGFRSDLDN--AISQQVNGEGYASRYMAL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + + G+ TG LD A++GD AL S + TR+G+ V+ +G L + Sbjct: 59 PTQGGVDMTPGAVRETGRNLDIAIKGDGLIALASGNREVYTRNGQIDVSPEGDL--SING 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKV-----IATMGLYSVDMSQGFVRR 172 PV PI +P ++GE G I+ G + + + L ++ +S + Sbjct: 117 LPVEGDNG-PIVLPPF-SSVSIGEDGVITIVPDDGDIAAPVDVDRIKLVNIPVSD-LSKN 173 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + + N P ++ V V G LE +N +++ EM I L ++F + ++ E Sbjct: 174 VDGFLVSNTAINPRDEE--VMVASGHLETANVSAINEMVASIALNRQFEAQIKMMKAAED 231 >gi|89095666|ref|ZP_01168560.1| FlhP [Bacillus sp. NRRL B-14911] gi|89089412|gb|EAR68519.1| FlhP [Bacillus sp. NRRL B-14911] Length = 274 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 106/268 (39%), Gaps = 35/268 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M L++++ + NM+N DT G++ + F++++ + Sbjct: 1 MSRMMITATNTLAQLQKQMDITSHNMANVDTTGYKRREATFTDLLVQQFANQPNSADENR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF---ALESPRG--IILTR 102 ++ + + + GS +T +LD A + +++ G + TR Sbjct: 61 LTPNGLRQGTGAMLAQSQIVMAQGSIKTTDRQLDTAFTKENQLYKVLVQTETGSEVQYTR 120 Query: 103 DGRFKV----TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT- 157 DG F + + LV+++G VLD PI I + F + E G ++ K Sbjct: 121 DGAFYLTPVSDTESMLVTSAGN-AVLDENDNPIYINGQPGEFAITENGILTAKDSTGQEQ 179 Query: 158 ---MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT--------VKRGFLEDSNANS 206 +G+ V+ Q ++ + ++ ++ L+ +T V++ LE SN N Sbjct: 180 EFSLGIVRVNKPQFLQQQGGNLLALAAGADGIDVLTDLTGALRGEAGVQQRALEQSNVNM 239 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSM 234 EM +I + + + + I ++ M Sbjct: 240 QKEMTDLITVQRAYQFQSRAISMADQMM 267 >gi|225159023|ref|ZP_03725333.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] gi|224802402|gb|EEG20664.1| protein of unknown function DUF1078 [Opitutaceae bacterium TAV2] Length = 261 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 105/253 (41%), Gaps = 20/253 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKISF 58 ++A + L + +N++N +T G+++ +S+ + Q + Sbjct: 7 LTSSVSALSNFTEGLEVIGNNIANVNTTGYKSSSASYSDSFSNTLRAATSVDSSRQTGTG 66 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIIL-TRDGRFKVTDDGSLVS 116 V + GS +TG D A+ G+ +F ++ P G TRDG FK D+G LV+ Sbjct: 67 VQLAGISTNYTQGSISTTGVSTDLAISGEGYFIVQDPNSGAQYITRDGSFKFDDNGYLVN 126 Query: 117 ASGKYPVLDMASVPIQIPQKD-EIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFV 170 ASG VLD AS PIQIP + ++ G +S +AT+GL V + Sbjct: 127 ASG-LRVLDSASAPIQIPTTGVQSKSISSNGAVSYVDTAGVTHTVATVGLAQVADQAKLM 185 Query: 171 RRENSGISPNIP----PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + + + P + +G K LE S + E+ MI + F + + Sbjct: 186 KEGGNLYDYSATTVAIGIPGSNGTGA-FKTYSLELSKVDLTAELPNMITMQGSFQANARM 244 Query: 227 IDENEKSMLEAIR 239 + ++ + + Sbjct: 245 VTVSDTIFDDIVN 257 >gi|295707198|ref|YP_003600273.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium DSM 319] gi|294804857|gb|ADF41923.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium DSM 319] Length = 273 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + L+Q+L + N+SNT+T G++ F++++ N+ + Sbjct: 1 MNRTMITAANTMGQLQQQLDVIGHNLSNTNTTGYKARDASFNDMLYQQVNNQEDKGTEKR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRG---IILTRD 103 ++ + + L+ GSF +T LD A+ + +F + + TRD Sbjct: 61 LTPAGIRQGTGAYLDQTSLNMMQGSFQNTDKLLDVAVSNPNVYFQVAVNDSQQPVQYTRD 120 Query: 104 GRFKVTDDG----SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIA 156 G F ++ G LV+ SG+ VL I + + G I+ KG Sbjct: 121 GSFHISPQGPNNVKLVNGSGQ-DVLGENGQAIIFSNAFKDIQIDGSGTITVTTNKGVDQF 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDLSG-----VTVKRGFLEDSNANSMY 208 T+GL +V Q + + + P DL+G V++G LE SN + Sbjct: 180 TLGLTNVQKPQVLEAKGENLFAFPAEMNQPNMFTDLTGKARETAGVEQGKLEQSNVDLSK 239 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSM 234 E+ M + + + I ++ M Sbjct: 240 ELTDMSIAQRAYQFNSRSISIADQMM 265 >gi|322421726|ref|YP_004200949.1| flagellar hook-basal body protein [Geobacter sp. M18] gi|320128113|gb|ADW15673.1| flagellar hook-basal body protein [Geobacter sp. M18] Length = 294 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 99/288 (34%), Gaps = 52/288 (18%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G+ L + ++ + +N+SN +T+GF+ + FS+++ + Q V Sbjct: 5 SALFTGVTGLLQNGEAMNVIGNNISNVNTIGFKGARTLFSDMLSQNVGNDSQIGKGVQMQ 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFA---------LESPRGIILTRDGRFKVTDDGS 113 GS S+ D A++G+ +FA + + L+R G F+V + + Sbjct: 65 VVQNVFSQGSTQSSENVTDLAIQGNTFFALKPSTAASPVATQNSAFLSRAGAFQVDNTLT 124 Query: 114 LVSASGKYPVLDMASVPIQI--------PQKDEIFNVGEKGEIS---------------- 149 LV+ G Y VLD PI+ +I +V G I+ Sbjct: 125 LVNPDG-YQVLDTQGNPIKFLNSGAAPTTDFGKIISVDNSGLITYLATDGITQNYYNTSG 183 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP----------PTPLEDLSG 191 + + + + + S + Sbjct: 184 AVGVAATVANSATVQRLAVVTASDPTALTKLGGSLYQATTAAGVSGAAFSLAANKPNGVS 243 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E +MI + +++ + I ++ E ++ Sbjct: 244 EKILSNTLEQSNVDMASEFVKMIVTQRAYSANSKTITTTDQMTQEVLQ 291 >gi|308050023|ref|YP_003913589.1| flagellar basal-body rod protein FlgF [Ferrimonas balearica DSM 9799] gi|307632213|gb|ADN76515.1| flagellar basal-body rod protein FlgF [Ferrimonas balearica DSM 9799] Length = 242 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 15/215 (6%) Query: 33 GFRTI--KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 GFR +V+ + G+ N + + + G +TG LD A++GD W Sbjct: 33 GFRADLERVQAHALGGSGLN----TRVMAQTQQSGANLSAGELNATGRTLDVAIQGDGWL 88 Query: 91 ALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS- 149 +++ G TR G + DG V+ G+ VL + PIQ+P+ E N+GE G IS Sbjct: 89 TVQTADGEAYTRAGAMVLDADGF-VTIDGR-AVLGLDG-PIQLPEYRE-LNIGEDGTISL 144 Query: 150 --QKGKVIATMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +G +I +G + +G + + G+ V + GFLE SN + Sbjct: 145 LPAEGGLIEEVGQLKLVNPEGNALEKGTDGLMRLRDGEIAPQDEAVQLASGFLEGSNVTA 204 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + E+ + L+++F L+ +++ ++ + Sbjct: 205 VEELLASMSLSRQFELQVKLMKSA-ETLAQSGNRL 238 >gi|229195985|ref|ZP_04322737.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1293] gi|228587367|gb|EEK45433.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1293] Length = 257 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--IATMGLYSVDMS 166 D L ++SG Y V+ + I+IP+ + V G + +G IA + +VD Sbjct: 121 NSDRYLQTSSGAY-VMGENNERIRIPEGAK-VAVQADGTLYDEGTQNNIARLQTKTVDAE 178 Query: 167 QG--FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++REN + VK LE+SN + EM ++ + ++ Sbjct: 179 ANSRLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTNQRMISASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|206975016|ref|ZP_03235931.1| putative flagellar basal-body rod protein [Bacillus cereus H3081.97] gi|217959255|ref|YP_002337803.1| flagellar basal body rod protein FlgG [Bacillus cereus AH187] gi|229138473|ref|ZP_04267062.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST26] gi|206747035|gb|EDZ58427.1| putative flagellar basal-body rod protein [Bacillus cereus H3081.97] gi|217066007|gb|ACJ80257.1| putative flagellar basal-body rod protein [Bacillus cereus AH187] gi|228645010|gb|EEL01253.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST26] Length = 257 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--IATMGLYSVDMS 166 D L ++SG Y V+ + I+IP+ + V G + +G IA + +VD Sbjct: 121 NSDRYLQTSSGAY-VMGENNERIRIPEGAK-VAVQPDGTLYDEGTQNNIARLQTKTVDAE 178 Query: 167 QG--FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++REN + VK LE+SN + EM ++ + ++ Sbjct: 179 ANSRLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|294501850|ref|YP_003565550.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium QM B1551] gi|294351787|gb|ADE72116.1| flagellar hook-basal body complex protein FlhP [Bacillus megaterium QM B1551] Length = 273 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 103/266 (38%), Gaps = 33/266 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + L+Q+L + N+SNT+T G++ F++++ N+ + Sbjct: 1 MNRTMITAANTMGQLQQQLDVIGHNLSNTNTPGYKARDASFNDMLYQQVNNQEDKGTEKR 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRG---IILTRD 103 ++ + + L+ G+F +T LD A + +F + + TRD Sbjct: 61 LTPAGIRQGTGAYLDQTSLNMTQGAFQNTDKLLDVAASNPNVYFQVAVNDSQQPVQYTRD 120 Query: 104 GRFKVTDDG----SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIA 156 G F ++ +G LV+ SG+ VL I + + G I+ G Sbjct: 121 GSFHLSPEGPNDVKLVNGSGQ-DVLGENGQAIIFNNAFKDIQIDGSGTITVTTNTGVDQF 179 Query: 157 TMGLYSVDMSQGFVRRENSGISPNI---PPTPLEDLSG-----VTVKRGFLEDSNANSMY 208 T+GL +V Q + + + P DL+G V++G LE SN + Sbjct: 180 TLGLTNVQKPQVLEAKGENLFAFPAGMNQPNMFTDLTGKARETAGVEQGKLEQSNVDLSK 239 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSM 234 E+ M + + + I ++ M Sbjct: 240 ELTDMSIAQRAYQFNSRSISIADQMM 265 >gi|254499120|ref|ZP_05111810.1| flagellar basal body rod protein [Legionella drancourtii LLAP12] gi|254351659|gb|EET10504.1| flagellar basal body rod protein [Legionella drancourtii LLAP12] Length = 258 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 94/262 (35%), Gaps = 27/262 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDI 52 M + I + A E + +A++++N +T ++ K+ F +V+ N Sbjct: 1 MSNALAIAASGLKAEEYHIDRIANDLANLNTANYKATKLTFEDVLYQNIHGEESLFNNQP 60 Query: 53 DQKIS-FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 K+ A K G ++ D A+ G ++ + + G I TR+ V Sbjct: 61 SAKLGLGTALYKSSKDFTDGPLKASNNWNDVAINGSGFYQVINTDGSIAYTRNSALSVDA 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVD 164 D L + G + D IQIP+ + G + + +++ T+ L Sbjct: 121 DHYLATQEG-LRLADN----IQIPEDFTQLTIHTNGNVEVTLVDEPEPQLLGTIQLAKFI 175 Query: 165 MSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 + + + PL D G T+ + +E SN + + + Q+ + Sbjct: 176 NPETLNPVGSGTYTLTDESSEPLIDNPGSSGLGTLAQYQVEGSNVDMVSSLMQLTMAQRV 235 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + ++ + + I Sbjct: 236 YQLNAKAVQIADE-LEKLTNEI 256 >gi|254460299|ref|ZP_05073715.1| flagellar proximal rod protein FlgF [Rhodobacterales bacterium HTCC2083] gi|206676888|gb|EDZ41375.1| flagellar proximal rod protein FlgF [Rhodobacteraceae bacterium HTCC2083] Length = 253 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 12/242 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +I L + + L+ + NM+N + G+R V E D + F Sbjct: 1 MDRNIHIALNSMRNISSDLTVNSQNMANVNVPGYRADLVVTREAQALQSFDEFRSRVFSR 60 Query: 61 SGK-EYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 GK S E G+ +TG +D A+ G+ +F + G L+R G F + ++ Sbjct: 61 QGKGTLFSAEQGAMQNTGEPMDAAIRGEGYFMIAPATGGDPALSRRGDFGFDLERFIIDG 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------GKVIATMGLYSVDMSQGFVR 171 +G +LD PIQ+P+ V E G+I + G + + + + + Sbjct: 121 AGS-RLLDTDMNPIQLPE-ARRIVVEETGQIQVELFGAPEGTFVPGPIIATTSAADVKLS 178 Query: 172 RENSGISPNIPPTPL-EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + PL E + +GFLE SN N++ + + I +KF I Sbjct: 179 KSIDSHIRPSNGDPLPEPDQRARISQGFLESSNVNTITALVKNIESQRKFEMSVKFISLA 238 Query: 231 EK 232 ++ Sbjct: 239 QE 240 >gi|126653432|ref|ZP_01725528.1| flagellar basal-body rod protein [Bacillus sp. B14905] gi|126589788|gb|EAZ83921.1| flagellar basal-body rod protein [Bacillus sp. B14905] Length = 210 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 20/210 (9%) Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL------------EGDAWFALESPRG 97 N + + + + G ST D AL G +F L P G Sbjct: 2 NQVGALNTGTYLQETLPNYIQGQIYSTDFTTDMALIDGNLPQNEDGVSGSIFFRLAHPDG 61 Query: 98 -IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 TR+G F + G LV+ G Y VL+ A IQ+P D F + E G I + +A Sbjct: 62 GEAYTRNGNFTLDGQGYLVNGQGLY-VLNDAGQRIQLPNDD--FRLDESGAIYVNNQQVA 118 Query: 157 TMGLYSVDMSQGFVRRENSGISP----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 +G+ +++N I N+P + T+++ FLE SN +S M Sbjct: 119 RVGVSYAANPNMLQKQDNGLIRTENGVNLPSAYGANGVSFTLRQNFLEGSNVDSGRAMTD 178 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 ++ + F + ++ ++SM +A+ I Sbjct: 179 LMTAYRAFEANQKVLQAYDRSMEKAVNEIG 208 >gi|226327743|ref|ZP_03803261.1| hypothetical protein PROPEN_01616 [Proteus penneri ATCC 35198] gi|225203447|gb|EEG85801.1| hypothetical protein PROPEN_01616 [Proteus penneri ATCC 35198] Length = 153 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 19/153 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDID 53 M S I A + + +++N++N T GF+ + F +++ GA+ ++ Sbjct: 1 MIRSLWIAKTGLDAQQTNMDVISNNLANVSTNGFKRQRAVFEDLLYQTIRQPGAMTSEQT 60 Query: 54 QKISFVASGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 S + G G+ T D A++G +F ++ P G TRDG F Sbjct: 61 NAPSGLQIGTGVRPVATERLHSQGNLAQTNGTRDVAIKGQGFFHVQLPDGTDAYTRDGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 ++ +G LV+ SG V I +P+ + Sbjct: 121 QMDQNGQLVTTSGFQVV-----PAIILPETAKK 148 >gi|251799753|ref|YP_003014484.1| flagellar basal body rod protein [Paenibacillus sp. JDR-2] gi|247547379|gb|ACT04398.1| flagellar basal body rod protein [Paenibacillus sp. JDR-2] Length = 288 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 109/292 (37%), Gaps = 56/292 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR---TIKVKFSEVVGAIKN------- 50 M A A ++R T+ +N++N +T G++ + F E++ ++ Sbjct: 1 MLRGLYTAAAGMTAQQRRHDTITNNITNINTPGYKQTYAVTRSFPEMLLSLTGVDQKDEK 60 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFAL--------------------EGD--- 87 I + + V + + G + TG DFAL +GD Sbjct: 61 QIGKVSTGVFAEESLAIHLQGDLMQTGKSSDFALVSNIDVPGMAFDASGKYVSPDGDVTF 120 Query: 88 ---AWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 A+F L+ G I TR G F +T DG LV+ G VL PIQ PQ V Sbjct: 121 QPQAFFTLQDKNGEIRYTRGGSFTLTSDGFLVAGDGS-NVLGADGNPIQFPQG-----VS 174 Query: 144 EKG-EISQKGKVIA---------TMGLYSVDMSQGFVRRENSGI---SPNIPPTPLEDLS 190 G ++ + + + L +D R + P+ Sbjct: 175 LDGLTLTADQRFVDAKTGADSGRQLLLTRIDNPNELAREGDGKFRLAGDAQDARPVVAGE 234 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V V++G++E SN ++ ++ + + + +I ++S+ +A+ + Sbjct: 235 RVEVRQGYVERSNVDAAQSSVDLMAALRAYEANQKVIQFYDESLDKAVNQVG 286 >gi|291277389|ref|YP_003517161.1| putative flagellar basal-body rod protein [Helicobacter mustelae 12198] gi|290964583|emb|CBG40436.1| putative flagellar basal-body rod protein [Helicobacter mustelae 12198] Length = 289 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 116/278 (41%), Gaps = 38/278 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 MQ + + + RL +++N++N +T F+ V + + +KN+ Sbjct: 13 MQNGYYNAVGGMVTQFNRLDAISNNLANLNTNAFKRDDVVIGDYLRLYETYQQELPLKNN 72 Query: 52 IDQKISFVA--------SGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTR 102 + F+ Y + +G+ + T LDFAL + + +FA+++P+G+ TR Sbjct: 73 TKEAAKFINRALDRVPIISDSYSDQSLGAMMQTDNPLDFALSKENLYFAIQTPQGVRYTR 132 Query: 103 DGRFKVTDDGSLVSASGKYPVL-----DMASVPIQIPQKDEIFNVGEKGEIS-------- 149 DG F V +DG L + G + + + + I + + G I Sbjct: 133 DGSFVVGEDGMLSTKEGYHVLSRTGLENEEGIAINV---QSQIEADKNGNIYFRVSDNEA 189 Query: 150 -QKGKVIATMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV-TVKRGFLEDSNANS 206 + + + + S + + N P + ++L+ +V++ FLE SN N+ Sbjct: 190 VGEAEQNNAIAVVSFVNPRLLKKEGKNLYSYPEDKKSDRQNLATTESVRQSFLEKSNVNA 249 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 + EM +I + + + ++ + + EAI +A+ Sbjct: 250 VIEMTNLIETNRLVDMYSKVLKTHMDDLNTEAISKLAT 287 >gi|148266214|ref|YP_001232920.1| hypothetical protein Gura_4204 [Geobacter uraniireducens Rf4] gi|146399714|gb|ABQ28347.1| protein of unknown function DUF1078 domain protein [Geobacter uraniireducens Rf4] Length = 294 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 104/286 (36%), Gaps = 52/286 (18%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ L + ++ + +N+SN +T+GF+ + FS+++ A + Q V K Sbjct: 6 AMFTGVSGLLNNGEAMNVIGNNISNVNTIGFKYGRTLFSDMLSANIGNDSQVGRGVQMQK 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG---------IILTRDGRFKVTDDGSL 114 S+ +T D ++G+++FAL+ P +L+R G F V ++ Sbjct: 66 VENIFGSSSYENTENVTDLGIQGNSFFALKPPTTAAPVAAQNAALLSRAGAFHVDKTLTM 125 Query: 115 VSASGKYPVLDMASVPIQIPQK--------DEIFNVGEKGEIS----------------- 149 V+ G Y VLD A PIQ +I + G I+ Sbjct: 126 VNPDG-YQVLDTAGNPIQFSNTGAAPATDFAKIVKIEPNGLITYLAQDGITTNYYNASGG 184 Query: 150 -------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP----------PTPLEDLSGV 192 + + + S G + S +P + + Sbjct: 185 VGVATTPANAATVQRLAVVSAADVTGLEKAGGSLYTPTASSGVSAAAFSLAGNQPNGTSE 244 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + LE SN + + +MI + +++ + I ++ E + Sbjct: 245 KILSNSLEQSNVDMASQFVKMIITQRAYSANSKTITTADEMTQEIL 290 >gi|328958263|ref|YP_004375649.1| flagellar basal-body rod protein FlgG [Carnobacterium sp. 17-4] gi|328674587|gb|AEB30633.1| flagellar basal-body rod protein FlgG [Carnobacterium sp. 17-4] Length = 240 Score = 147 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 102/244 (41%), Gaps = 22/244 (9%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS----------FVAS 61 A++ ++ V+++++N +T G+++ + F+E++ N +S S Sbjct: 1 MNAIQNQMDAVSNDIANINTTGYKSKNISFNELLLNDLNGEADYLSDTVQDAGINRGSKS 60 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGK 120 G + GS IS + A+ G+ +F + G TRDG F V D S+ + +G Sbjct: 61 GVTSTNFTQGSLISDPNDYHLAIAGEGFFGVIGENGERYLTRDGAFHVNGDKSITNDNGD 120 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKG-KVIATMGLYSVDMSQGFVRRENSG 176 + Q P+ D ++ E GE+ S+ G ++ T+ L+ + + Sbjct: 121 TLEIQTTIPTNQWPEGD--VSIAENGEVTIHSENGSTLVGTIPLFHPAQTNALEPVGENK 178 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 S N E ++++ +LE SN + + +M+ + ++ + ++ M Sbjct: 179 YSYNGAFGTGEG----SIQQNYLEASNVDLASSITEMMLAQRSYSLNLKVAQGTDE-MAS 233 Query: 237 AIRN 240 I Sbjct: 234 VINQ 237 >gi|47565441|ref|ZP_00236482.1| flagellar basal-body rod protein flgF, putative [Bacillus cereus G9241] gi|47557431|gb|EAL15758.1| flagellar basal-body rod protein flgF, putative [Bacillus cereus G9241] Length = 257 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 100/257 (38%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--IATMGLYSVD-- 164 D L ++SG Y V+D+ + ++IP+ + V G + +G IA + +VD Sbjct: 121 NSDRYLQTSSGAY-VMDVNNERVRIPEGAK-IAVQADGTLYDEGTQNNIARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++REN + VK LE+SN + EM ++ + ++ Sbjct: 179 ANARLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|187932642|ref|YP_001885066.1| flagellar basal body rod protein FlgG [Clostridium botulinum B str. Eklund 17B] gi|187720795|gb|ACD22016.1| flagellar hook-basal body complex protein [Clostridium botulinum B str. Eklund 17B] Length = 257 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 100/259 (38%), Gaps = 20/259 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVV----------GA 47 M F ++ + LE TV +N+ N + G++ + F +V+ Sbjct: 1 MIRGFYTAVSGLITLENEQQTVTNNIVNVNNNGYKKNTLTKQSFEDVMITNRQNKVGNRH 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 I N + V G+F ST + DF ++G +F ++ + TR G FK Sbjct: 61 IPNKLGNLNLGVKVNDVSTIYTQGAFKSTDSNTDFGIDGRGFFTVQRGNERLFTRSGDFK 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKGKVIATMGLYSVD 164 + G L++ +G Y + + + P G S G+ T+ Sbjct: 121 IDQQGYLITGNGDYVLGRNNATGAEEPIYVGKDEFSLDGNNNLQSAAGESTHTLLTADFT 180 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++ + P + V V++G LE SN N E+ +++ + ++F + Sbjct: 181 EYAPLEKVGDNYYKGDNPVY----NAVVNVRQGVLETSNVNPTEELVKLMEIKRQFETNQ 236 Query: 225 TLIDENEKSMLEAIRNIAS 243 + ++++ +A I S Sbjct: 237 KFVSMQDETVQKAANEIGS 255 >gi|90415317|ref|ZP_01223251.1| hypothetical protein GB2207_08376 [marine gamma proteobacterium HTCC2207] gi|90332640|gb|EAS47810.1| hypothetical protein GB2207_08376 [marine gamma proteobacterium HTCC2207] Length = 253 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 17/244 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+A + + + + ++N TVGF+ S V ++ + Sbjct: 1 MDKLTYTALSAMQSQSVARAAITNELANVSTVGFKKSFQIASSAVKIDGPGLETRFQPGL 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + ++ G+ +STG LD ++ +++ G I TR G KV+ G L +A G Sbjct: 61 QITDVINLTPGTPMSTGRPLDISMNDQTVLGIQTESGDIAYTRRGDLKVSPSGVLENAIG 120 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--------GKVIATMGLYSVDMSQGFVR 171 ++ PI +P + + + G + + + + L +Q VR Sbjct: 121 DL-IMGEGG-PISVPVGN-LITISPDGTVFAQLPTEPEAAAVAVGQLMLRDASQTQ-LVR 176 Query: 172 RENSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 R++ P +D + V+V G LE SN N + M +M+ +++F L+ Sbjct: 177 RQDGLFEPRDEALKGQDFNSGPLAVSVLPGMLEGSNVNPVGTMIKMLDFSRQFEMQLKLV 236 Query: 228 DENE 231 E + Sbjct: 237 KETQ 240 >gi|317133480|ref|YP_004092794.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] gi|315471459|gb|ADU28063.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] Length = 326 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 46/322 (14%), Positives = 92/322 (28%), Gaps = 84/322 (26%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------KNDIDQK 55 + N + A + + + +N++N +T GF+ + FS++ + Q Sbjct: 1 MRALNSAVTGLQAQQTAMDVIGNNIANVNTDGFKASRTDFSDLFYQTLQGGTDNTNATQV 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI----------------I 99 V +T + + G+ +F + + Sbjct: 61 GYGVKVSGVSKDMSTTGETTTNVPTNLFINGEGYFIVSTDSASHTAGSTTNSSGATVADY 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMAS------------------------------- 128 TR G F+ G LV A+G Y + A+ Sbjct: 121 YTRVGNFQKNASGYLVDANGNYVMGMDATSLAAYQADPTSLPTLHAISLIGATFHPTAAG 180 Query: 129 ------VPIQIPQKDEIFNVGEKGEIS--------------QKGKVIAT------MGLYS 162 V + + G IS G A+ + L + Sbjct: 181 TSTSSDVTVTANTNISDLTINSDGTISGTIGSSTGTFEYGTSNGATTASASDPIIVALAT 240 Query: 163 VDMSQGFVRRENSGISPNIPPT-----PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 G + N+ + ++ + + T+ G LE SN + E MI Sbjct: 241 FPNDGGLSQAGNTSFTQSVSSGSPTYIQASNGNSTTLISGALEQSNVDLAREFTNMIVTQ 300 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + F + + +I + + E + Sbjct: 301 RGFQANSRVITVADSLLEEIVN 322 >gi|324325790|gb|ADY21050.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis serovar finitimus YBT-020] Length = 257 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--IATMGLYSVDMS 166 D L ++SG Y V+D+ + ++IP+ + V G + +G IA + +VD Sbjct: 121 NSDRYLQTSSGAY-VMDVNNERVRIPEGAK-IAVQADGTLYDEGTQNNIARLQTKTVDAE 178 Query: 167 QG--FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++REN + VK LE+SN + EM ++ + ++ Sbjct: 179 ANSRLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|229155343|ref|ZP_04283453.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 4342] gi|228628058|gb|EEK84775.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 4342] Length = 257 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGASGTTSFFVTSKNDETFLTRDGSFTI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG Y V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTSSGAY-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + ++ Sbjct: 179 ANNRLVQRENKSFTLAEGNITDLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|323341368|ref|ZP_08081612.1| flagellar distal rod protein [Lactobacillus ruminis ATCC 25644] gi|323091245|gb|EFZ33873.1| flagellar distal rod protein [Lactobacillus ruminis ATCC 25644] Length = 234 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 36/255 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK--------VKFSEVVGAIKNDI 52 M S + + L++R ++ N++N +T G++ K V+ +G +KN+ Sbjct: 1 MIRSIDTLKSNFEVLQKRQEAISANIANVNTNGYQEKKLFQSTLKNVQLHNFMGGLKNEQ 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 + G + YL+ + GS T + DFA+ G +F + G I TR+G F Sbjct: 61 RVNVGNFTFGNQIDGSYLNTQSGSMHETDLKTDFAINGAGYFTVRMNNGQIGYTRNGNFT 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 G LV+ G Y VL IQ + + F + S + + Sbjct: 121 ENRQGQLVTQEG-YAVLGANGQAIQANEANPNFMI------------------VSFNNAS 161 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + N+ + N T + V +G LE SN ++ M +I +++F + ++ Sbjct: 162 ALQNQGNTIYTSNTAGTQIR----SEVVQGMLEGSNTDTAQNMVDLIQTSREFEANQKVL 217 Query: 228 DENEKSMLEAIRNIA 242 +++ +A+ + Sbjct: 218 STANQTLSKAVNELG 232 >gi|126462483|ref|YP_001043597.1| hypothetical protein Rsph17029_1715 [Rhodobacter sphaeroides ATCC 17029] gi|126104147|gb|ABN76825.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 251 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 14/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTV-ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M + L + A + + A N++N GFR + D +F Sbjct: 1 MDRLIHTALNSL-ANLRDTRVIQAQNLANQTVPGFRRDLTNEGDARFLKALDAASARAFQ 59 Query: 60 AS-GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 G S G TG +D A+ + WF ++ G L+R G ++T DG L++ Sbjct: 60 TERGPHLFSSAPGLLNQTGEPMDVAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNG 119 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKG----KVIATMGLYSVDMSQGFV 170 +G+ +LD A PI++P + V E G I Q G +V + ++ Sbjct: 120 AGE-AMLDPAMQPIELPPVRALI-VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTLR 177 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + I P P D V +G LE SN N+M E+ I L + F +I Sbjct: 178 KDPDGRIRAGGEPLPPPD-QRARVLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSA 236 Query: 231 EK 232 ++ Sbjct: 237 KE 238 >gi|221639494|ref|YP_002525756.1| Flagellar proximal rod protein FlgF [Rhodobacter sphaeroides KD131] gi|221160275|gb|ACM01255.1| Flagellar proximal rod protein FlgF [Rhodobacter sphaeroides KD131] Length = 251 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 14/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTV-ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M + L + A + + A N++N GFR + D +F Sbjct: 1 MDRLIHTALNSL-ANLRDTRVIQAQNLANQTVPGFRRDLTNEGDARFLKAMDAASARAFQ 59 Query: 60 AS-GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 G S G TG +D A+ + WF ++ G L+R G ++T DG L++ Sbjct: 60 TERGPHLFSSAPGLLNQTGEPMDVAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNG 119 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKG----KVIATMGLYSVDMSQGFV 170 +G+ +LD A PI++P + V E G I Q G +V + ++ Sbjct: 120 AGE-AMLDPAMQPIELPPVRALI-VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTLR 177 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + I P P D V +G LE SN N+M E+ I L + F +I Sbjct: 178 KDPDGRIRARGEPLPPPD-QRARVLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSA 236 Query: 231 EK 232 ++ Sbjct: 237 KE 238 >gi|77463651|ref|YP_353155.1| flagellar proximal rod protein FlgF [Rhodobacter sphaeroides 2.4.1] gi|77388069|gb|ABA79254.1| flagellar proximal rod protein FlgF [Rhodobacter sphaeroides 2.4.1] Length = 251 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 14/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTV-ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M + L + A + + A N++N GFR + D +F Sbjct: 1 MDRLIHTALNSL-ANLRDTRVIQAQNLANQTVPGFRRDLTNEGDARFLKAMDAASARAFQ 59 Query: 60 AS-GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 G S G TG +D A+ + WF ++ G L+R G ++T DG L++ Sbjct: 60 TERGPHLFSSAPGLLNQTGEPMDVAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNG 119 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKG----KVIATMGLYSVDMSQGFV 170 +G+ +LD A PI++P + V E G I Q G +V + ++ Sbjct: 120 AGE-AMLDPAMQPIELPPVRALI-VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTLR 177 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + I P P D V +G LE SN N+M E+ I L + F +I Sbjct: 178 KDPDGRIRAGGEPLPPPD-QRARVLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSA 236 Query: 231 EK 232 ++ Sbjct: 237 KE 238 >gi|161485722|ref|NP_660672.3| flagellar basal body rod protein FlgF [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008455|sp|Q8K9K5|FLGF_BUCAP RecName: Full=Flagellar basal-body rod protein flgF gi|21623236|gb|AAM67883.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 249 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 103/254 (40%), Gaps = 23/254 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + L + + +A+N++N TVGF+ F+ + +N + K ++ Sbjct: 1 MNKAIYESMNAAIKLLDKQAVIANNLANISTVGFKES---FN-LFIKDRNLQNLKKTYNQ 56 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + KEY + G+ I T LD ++ + W A++ G T++G K+ +G + + Sbjct: 57 NVKEYYNFYPGTLIHTQRNLDLVIKNNGWLAIKDINGQEAYTKNGHIKINKEGKMTVQN- 115 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATMGLYSVDMSQGFVR 171 Y ++ I+IP + + G I S I ++ L + ++ Sbjct: 116 -YELIGNNGN-IKIP-NNVNLKISSNGIIKEIKKNKDSIIESTIGSLKLVRLQN-DNLIQ 171 Query: 172 RENSGISPNIPPTP----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 +EN + S V ++ LE SN N M MI ++F +I Sbjct: 172 KENGLFYLKKDNLNKYKNILHDSSVRIQSEMLEASNVNPTKNMIDMISNARQFEMNMKII 231 Query: 228 DENEKSMLEAIRNI 241 +++ E + Sbjct: 232 SMCDQN-TEYANQL 244 >gi|150019072|ref|YP_001311326.1| hypothetical protein Cbei_4260 [Clostridium beijerinckii NCIMB 8052] gi|149905537|gb|ABR36370.1| protein of unknown function DUF1078 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 363 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 103/356 (28%), Gaps = 121/356 (33%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-- 58 M G++ + +L + +N++N T F++ +F +++ ++ S Sbjct: 1 MLRCMYSGISGMKVNQTKLDVIGNNIANVGTTAFKSSSARFKDMLYQNASEATAPTSVLG 60 Query: 59 ------VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPR------------ 96 + G + S G+ +STG LD ++GD + + Sbjct: 61 GTNAKQIGLGAQVSSINKVMGQGNALSTGRSLDVCIDGDGYLVVAKGDLNSGIGANQSTG 120 Query: 97 --------------GIILTRDGRFKVTDDGSLVSASG----------------------- 119 + TRDG + G+L++A G Sbjct: 121 APDTAATDATGEISETLFTRDGNLTLDYQGNLLTADGHRVMGYYLTASKNDGGTDNAKSL 180 Query: 120 -------------------KYPVLDMASVPIQIPQKDEI----------------FNVGE 144 + V D P+ IP I F +G+ Sbjct: 181 TYDSTNNVINANYVNADSKQLTVSDSTMRPLVIPDSVTISGTPGAADAVTQPVKKFEIGK 240 Query: 145 KGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-------------- 185 G I+ K I + + S +G + + P Sbjct: 241 DGIITAVLGDGKRAAIGQIAMASFKNPEGLTDLGGNMCVNSSNSGPIVYKTGKVDTSTSS 300 Query: 186 ------LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 ++ +G LE SN + + MI T+ F + + +I ++ + Sbjct: 301 STTTATGNQGGFGSLIQGALEGSNVDLTEQFTDMITATRSFQAASKMITTGDEILQ 356 >gi|85710164|ref|ZP_01041229.1| flagellar hook protein [Erythrobacter sp. NAP1] gi|85688874|gb|EAQ28878.1| flagellar hook protein [Erythrobacter sp. NAP1] Length = 279 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 95/276 (34%), Gaps = 41/276 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L+ E L +++N++N +T GF+ +FS++V + + + + + Sbjct: 2 SFFTSLSGMRNAETDLRVISNNIANAETAGFKKSSAQFSDLVASGGSTDPRTTPGIGATV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSASG 119 +S++ +G TG LD A+ G + + I TR+G ++ G+L A G Sbjct: 62 SRISQDFGLGQLEQTGRALDIAINGGGFITSANAISGDINFTRNGNLEIVASGTLQDAFG 121 Query: 120 ----KYPVLDMASVPIQIPQKDEIFN---------------------VGEKGEISQK--- 151 +PV + +P I +G ++ Sbjct: 122 DRIQGFPVDGAGTPTSNVPADITIPTSRTVTDPGTGATQDFQLTSVGFDARGVLTATYSD 181 Query: 152 --GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSN 203 + +A + L + + G + P G + G LE SN Sbjct: 182 GFSEPVAMLSLATFPANGGLRSIGQTKWEATAESGDPEFGQPGVGNFGA-IATGTLERSN 240 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + EM ++ + F + ID + Sbjct: 241 VDLAEEMVSLLTAQRNFQANARAIDTATAITQTVLN 276 >gi|332558507|ref|ZP_08412829.1| FlgF [Rhodobacter sphaeroides WS8N] gi|332276219|gb|EGJ21534.1| FlgF [Rhodobacter sphaeroides WS8N] Length = 251 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 14/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTV-ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M + L + A + + A N++N GFR + D +F Sbjct: 1 MDRLIHTALNSL-ANLRDTRVIQAQNLANQTVPGFRRDLTNEGDARFLKAMDAASARAFQ 59 Query: 60 AS-GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 G S G TG +D A+ + WF ++ G L+R G ++T DG L++ Sbjct: 60 TERGPHLFSSAPGLLNQTGEPMDVAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNG 119 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKG----KVIATMGLYSVDMSQGFV 170 +G+ +LD A PI++P + V E G I Q G +V + ++ Sbjct: 120 AGE-AMLDPAMQPIELPPVRALI-VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTLR 177 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + I P P D V +G LE SN N+M E+ I L + F +I Sbjct: 178 KDPDGRIRAGGEPLPTPD-QRARVLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSA 236 Query: 231 EK 232 ++ Sbjct: 237 KE 238 >gi|42780864|ref|NP_978111.1| flagellar basal body rod protein FlgG [Bacillus cereus ATCC 10987] gi|42736784|gb|AAS40719.1| flagellar basal-body rod protein, putative [Bacillus cereus ATCC 10987] Length = 257 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG + V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTSSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + ++ Sbjct: 179 ANNRLVQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|149183417|ref|ZP_01861850.1| FlhP [Bacillus sp. SG-1] gi|148848862|gb|EDL63079.1| FlhP [Bacillus sp. SG-1] Length = 278 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 107/273 (39%), Gaps = 41/273 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + L++++ + N++N+DT G++ + FSE++ +++ Sbjct: 1 MNRTMIGATNTLNQLQKQMDIIGHNLANSDTNGYKRREAMFSELLFQQVSNLKGEKDANT 60 Query: 54 -------QKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFAL--ESPRG--IILT 101 ++ + ++ G+ +TG LDFAL + +F + + G + T Sbjct: 61 RLTPGGIRQGVGAKLAQSEINLAQGALKATGRSLDFALTSRNQFFKVLVQGEDGADVRYT 120 Query: 102 RDGRFKVTDDGS----LVSASGKYPVLDMASVPIQIPQ---KDEIFNVGEKGEISQKGKV 154 RDG F G+ LV+ G + VLD I + + ++G+ G+++ G Sbjct: 121 RDGAFYANPIGNGEMMLVNGQG-HAVLDENDNFITFTEAEMNSQDISLGDSGQLTIGGTP 179 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTP-------------LEDLSGVTVKRGFLED 201 +G+ SV+ Q + + + + + + LE Sbjct: 180 FN-LGIVSVEKPQFMQQVGQNLLGLPDDLQGFGVNENEILTSLEGALRDNIGLAQSTLEG 238 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 SN + EM M+++ + + + I ++ M Sbjct: 239 SNVDIGKEMTDMLNVQRAYQFQSRSISMADQMM 271 >gi|118477204|ref|YP_894355.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis str. Al Hakam] gi|225863630|ref|YP_002749008.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB102] gi|229183964|ref|ZP_04311179.1| Flagellar basal-body rod protein flgG [Bacillus cereus BGSC 6E1] gi|118416429|gb|ABK84848.1| flagellar basal-body rod protein [Bacillus thuringiensis str. Al Hakam] gi|225789416|gb|ACO29633.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB102] gi|228599489|gb|EEK57094.1| Flagellar basal-body rod protein flgG [Bacillus cereus BGSC 6E1] Length = 257 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + QR++ ++N++N T GF+ + +V A + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDAYRRGDGAVTNIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGASGTTSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L + SG + V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTTSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + ++REN + VK LE+SN + EM ++ + ++ Sbjct: 179 ANARLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|189426344|ref|YP_001953521.1| hypothetical protein Glov_3295 [Geobacter lovleyi SZ] gi|189422603|gb|ACD97001.1| protein of unknown function DUF1078 domain protein [Geobacter lovleyi SZ] Length = 296 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 99/289 (34%), Gaps = 54/289 (18%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ LA + L+ + +N+SN++T+GF+ ++ FS+++ A + Q V K Sbjct: 6 AMFTGVSGLLANAEGLNVIGNNLSNSNTIGFKGGRMLFSDLLSAPIGNNSQVGRGVQIQK 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR----------GIILTRDGRFKVTDDGS 113 GS ST D A++GD +F+ P +R G ++ + Sbjct: 66 VDNLFSQGSLESTTVVTDLAIQGDKFFSFAVPGTTAAAAIAVTDAYYSRAGALRIDSNNR 125 Query: 114 -LVSASGKYPVLDMASVPIQIPQKDEIFN-----------VGEKGE-------------- 147 L++ G Y LD P+ + V +G Sbjct: 126 SLINPDG-YVALDENRQPVVFVSTYTDTSGNVLDFQKVAGVDAQGRLQLLYADNNGNSSK 184 Query: 148 -------ISQKGKVIATMGL--YSVDMSQGFVRRENSGISPNIPPTPL--------EDLS 190 + +GL + G + ++ + + Sbjct: 185 VYYAGNGVVPVPTTTGAIGLGTARIPNPPGLEKVGSTLFKSTGNAVGGSGTPIVTRSNGT 244 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + EM +MI + +++ + I ++ E + Sbjct: 245 NEKILSNNLELSNVDMATEMVKMILTQRAYSANSKTITTADEMTQEVLN 293 >gi|306820921|ref|ZP_07454541.1| flagellar basal body and hook protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551035|gb|EFM39006.1| flagellar basal body and hook protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 372 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 82/206 (39%), Gaps = 8/206 (3%) Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILT 101 +V + I S + ++ G+ T + +LEG+ +F + +S I + Sbjct: 166 IVPEARKSIGTINSGNLIDRVMINFNQGAQERTENPMHISLEGNGFFKVRLDSTDAIKYS 225 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIA 156 R G F + + G L G VL I++P G + + IA Sbjct: 226 RSGVFTLDNSGVLKDFLGN-IVLSEDGSEIKVPTNSRSLEFKSDGSVVSLNSDGQREQIA 284 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 + L + + + +S + +E G V +G+LE SN +++ EM MI + Sbjct: 285 KLALVDIYNKEDMQKYGHSYMQMTNNAQAIEHPFGGKVLQGYLEKSNVSAIDEMVDMIQM 344 Query: 217 TQKFNSITTLIDENEKSMLEAIRNIA 242 + F S +I+ ++ M +A I Sbjct: 345 YRGFESDQKVINAYDQIMQKAANEIG 370 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 21/188 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKNDIDQKIS 57 M +A + ++ +++N+SN DT F+ FSE + + +++ + Sbjct: 1 MFRGIYTASSAMQTKQNQIEIISNNISNVDTTAFKKDVGVTEAFSEKLLMKRENVEGYLR 60 Query: 58 FVASGKEYLSKEVGS-FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 ++ + +K + + + T D + + LE G + D+G L + Sbjct: 61 ANSNNVKVSNKTLKNGLVKT----DIEIS-RGYLTLEDKNGKGYYKSASVVRDDEGYLRT 115 Query: 117 ASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 +Y +LD S I +P+ + V G I G+ +A + + S Sbjct: 116 VYNEYNSNDITKFGAYLLDENSNRINVPEGE--ITVDNNGNIVSGGRQVAKLIVPEARKS 173 Query: 167 QGFVRREN 174 G + N Sbjct: 174 IGTINSGN 181 >gi|28952051|ref|NP_240160.2| flagellar basal body rod protein FlgF [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681700|ref|YP_002468086.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682255|ref|YP_002468639.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471396|ref|ZP_05635395.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621988|gb|ACL30144.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624543|gb|ACL30698.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086650|gb|ADP66731.1| flagellar basal body rod protein FlgF [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087236|gb|ADP67316.1| flagellar basal body rod protein FlgF [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087755|gb|ADP67834.1| flagellar basal body rod protein FlgF [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 252 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 26/257 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S + A L ++ S +++N++N T GF+ K F+ N + S Sbjct: 1 MENSIYKSMIAANQLLEKQSIISNNLANISTTGFK-EKFIFA---IQNHNVKNLYNSDKK 56 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 KEY + G TG LD ++ D W ++ G T++G K+ L Sbjct: 57 ITKEYYNLSPGILRYTGRNLDLFIKDDGWLTVKDTNGQEAYTKNGHLKINSKRKLTIQDN 116 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--------GKVIATMGLYS------VDM 165 + V+ + I IP+ I + G I+ I ++ L + Sbjct: 117 E--VIG-NNCNIIIPKNI-ILKILSNGVITSVKNKHKHIVETKIGSLKLVQLPSQDLIQN 172 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 G + + ++ + V+ G LE+SN N+ M +MI ++F Sbjct: 173 ENGLFYLKKNNEINKKHTNTIKHSKKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMK 232 Query: 226 LI---DENEKSMLEAIR 239 +I D+N + + I Sbjct: 233 MISMCDQNAEYANQLIN 249 >gi|163939582|ref|YP_001644466.1| flagellar basal body rod protein FlgG [Bacillus weihenstephanensis KBAB4] gi|163861779|gb|ABY42838.1| flagellar basal body rod protein [Bacillus weihenstephanensis KBAB4] Length = 257 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + Q ++ ++N++N T GF+ + +V + + Sbjct: 1 MNGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSATNIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNVQMTNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L +ASG + V+ + I+IP+ + V G ++Q V+ Sbjct: 121 NSDRYLQTASGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDVE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + V+ LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNVADLPNGTGAVRNHMLENSNVDMTKEMADLMTNQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RIMTSFDKIYEKEANEI 255 >gi|315636316|ref|ZP_07891566.1| flagellar distal rod protein FlgG [Arcobacter butzleri JV22] gi|315479405|gb|EFU70088.1| flagellar distal rod protein FlgG [Arcobacter butzleri JV22] Length = 239 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 31/254 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKNDID---- 53 M A+ + RL +++N++N +T+GF+ + F+ + +++ Sbjct: 1 MNQGVYPLAASMINQINRLDQISNNLANVNTLGFKQEGTTETTFNYYLHKMESQQKLMLK 60 Query: 54 ---QKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKV 108 + Y + E+G + TG LDFAL D +F +++ G I+ TRDG FK Sbjct: 61 ESVVTNNIPKIDSRYTNAEMGPIVMTGNSLDFALNEPDTFFKIQNENGDIVYTRDGAFK- 119 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 DG LV ++G VL+ + I I E G SQ +G+ + Sbjct: 120 NLDGFLVDSNGN-NVLNADNEAIVI----------EDGFESQ-------IGVAKTPYTNL 161 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +N+ + NI + + + RG +E SN NS+ M ++I ++F+ I Sbjct: 162 EKMGDNTYLVKNIDEAEQIENNDGKIVRGAVEQSNVNSVTAMVELIDAHRRFDQSQRAIK 221 Query: 229 ENEKSMLEAIRNIA 242 + I I Sbjct: 222 TIDDLNAGLIEKIG 235 >gi|254437478|ref|ZP_05050972.1| hypothetical protein OA307_2348 [Octadecabacter antarcticus 307] gi|198252924|gb|EDY77238.1| hypothetical protein OA307_2348 [Octadecabacter antarcticus 307] Length = 253 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 12/237 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFV 59 M + +I L + L + A NM+N + GFR E + ++ Sbjct: 1 MDRNIHIALNSMRNLSTEMRVNAQNMANLNVPGFRADLTVTREASFLTSLDQYQSRVYSQ 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 S + S + GS STG+E+D A+ G+ +F +E G L+R G D LV Sbjct: 61 QSQEALFSDDAGSLQSTGSEMDTAIRGNGYFFVEPALGGDAALSRRGDLGFDDGRFLVDG 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVI-ATMGLYSVDMSQGFV 170 +G +LD PIQ+P I V E G+I + +G ++ + S+ + Sbjct: 121 AGN-RLLDTELAPIQMPPTRRIV-VEETGQIQMELMGTPEGTLVAGPIIATSMAEGISLI 178 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + + I P+ E + +GFLE SN N++ + + I + F I Sbjct: 179 KSPDGHIRPSNNTELPEPDQRARIAQGFLESSNVNTISALIKNIESQRHFEMSVKFI 235 >gi|229178180|ref|ZP_04305551.1| Flagellar basal-body rod protein flgG [Bacillus cereus 172560W] gi|228605310|gb|EEK62760.1| Flagellar basal-body rod protein flgG [Bacillus cereus 172560W] Length = 257 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 94/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG Y V+D+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTSSGAY-VMDVNNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|313673204|ref|YP_004051315.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939960|gb|ADR19152.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] Length = 206 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 36/242 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+A A ++ A+N++N + F+ E V Sbjct: 1 MIPGLFYALSAISAGNKKYGVTANNIANISSTAFKGKIAHLKEF----------SKGGVE 50 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 ++ +G FI+TG LD A+ GD +F + +R G + +G +V SG+ Sbjct: 51 LYSVTSNEGIGYFINTGRPLDLAINGDGYFKFTDGNKEVYSRMGILSIDKNGEMVDVSGR 110 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 +++ + P + ++ KG + G+V + +Y+ +N G+ P Sbjct: 111 RVGINVGTSP-------DNVHIDNKGNVYVDGEVKGKLQIYN----------QNGGVVP- 152 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 S + GFLE SN + EM + I + + + ++ + + Sbjct: 153 --------DSNYEILSGFLEASNVDIAKEMVESITNFRYIQANVKTVKTVDEMLGNIVNI 204 Query: 241 IA 242 + Sbjct: 205 VG 206 >gi|197120190|ref|YP_002140617.1| flagellar hook protein FlgE [Geobacter bemidjiensis Bem] gi|197089550|gb|ACH40821.1| flagellar hook protein FlgE [Geobacter bemidjiensis Bem] Length = 294 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 52/287 (18%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G++ L + ++ + +N+SN +TVG++ + FS+++ + Q V Sbjct: 5 SALYTGVSGLLQNGEAMNVIGNNISNVNTVGYKGARTLFSDMLSQNVGNNSQIGKGVQMQ 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFA---------LESPRGIILTRDGRFKVTDDGS 113 GS ++ D A++G+++FA + + L+R G F + Sbjct: 65 AVQNVFSQGSTQTSENVTDLAIQGNSFFALKPSTAAAPVAAQSSAFLSRAGAFHTDSNLY 124 Query: 114 LVSASGKYPVLDMASVPIQI--------PQKDEIFNVGEKGEIS---------------- 149 LV+ G Y VLD A PI+ ++ ++ G I+ Sbjct: 125 LVNPDG-YQVLDTAGNPIKFLNSGAAPATDFGKVLSIDNTGLITYLATDGITQNYYSTSG 183 Query: 150 --------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIP----------PTPLEDLSG 191 + + + + S + Sbjct: 184 VAGVATTPAAAAAAQKVAVVTAPDPTALKKVGGSLYQATTTSGVSAAGFSLAANKANGVS 243 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + LE S + E +MI + +++ + I +++ E + Sbjct: 244 EQILSNTLEQSTVDLANEFVKMITTQRAYSANSKTITTSDQMTQEVL 290 >gi|23010476|ref|ZP_00051152.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 160 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 4/153 (2%) Query: 90 FALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS 149 A+++P+G TR+G F++ G+LV++ G Y V PI I Q++ ++ G +S Sbjct: 9 LAVQTPQGPRYTRNGAFELDPQGNLVTSDG-YAVQGDGG-PITIGQQETGLSIAPDGTVS 66 Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + + + Q + S P P G ++ G LE SN + E Sbjct: 67 TNLGIRGRLRIVTFANPQALQSEGANLFSSQAPARPA--GPGQHLEPGALERSNVKPVVE 124 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 M +++ + + + ++++I + AIR +A Sbjct: 125 MTRLMDVNRTYAMVSSVISRLDDLRGTAIRRLA 157 >gi|229011065|ref|ZP_04168259.1| Flagellar basal-body rod protein flgG [Bacillus mycoides DSM 2048] gi|228750237|gb|EEM00069.1| Flagellar basal-body rod protein flgG [Bacillus mycoides DSM 2048] Length = 257 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + Q ++ ++N++N T GF+ + +V + + Sbjct: 1 MNGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSATNIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNVQMTNSATDFFLDDGAAGTSSFFVTSKNDERFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L +ASG + V+ + I+IP+ + V G ++Q V+ Sbjct: 121 NSDRYLQTASGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDVE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + V+ LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNVADLPNGTGAVRNHMLENSNVDMTKEMADLMTNQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RIMTSFDKIYEKEANEI 255 >gi|68164563|gb|AAY87292.1| predicted flagellar basal-body rod protein [uncultured bacterium BAC17H8] Length = 259 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 33/248 (13%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK-----EY 65 A +S +++N++N+ + GF+ F + + +I V G Sbjct: 8 ALKMATTDISIISNNIANSGSTGFKRSDGNF---LHSYAEEIPIPGLNVGFGVVHEEPRR 64 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGKYPV 123 + GS T LD A+ G F P + +RDG F + G+LV+ V Sbjct: 65 QDHKQGSLRVTNNSLDLAINGGGMFVALKPDDGEVTFSRDGSFLIDFVGNLVTTD-NRRV 123 Query: 124 LDMASVPIQIPQKD----------EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQG 168 + I IP ++ + G+I G+++ T+ L S G Sbjct: 124 VGANGEQIVIPPSKLDAAGNETLLDVIKISNTGKIQLTYGDGEMVDAGTLALAHFANSGG 183 Query: 169 FVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 S P I +P + G + +G LE SN N E+ +++ Q F++ Sbjct: 184 LKPVGGSYFKATEKSGPAILGSPTQQNFG-EIVQGHLEMSNTNVANELTKLMVSQQAFSA 242 Query: 223 ITTLIDEN 230 + L+ Sbjct: 243 SSRLMQSA 250 >gi|12057219|gb|AAF14371.2|AF133240_5 flagellar proximal rod protein FlgF [Rhodobacter sphaeroides] Length = 251 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 14/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTV-ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M + L + A + + A N++N GFR + D +F Sbjct: 1 MDRLIHTALNSL-ANLRDTRVIQAQNLANQTVPGFRRDLTNEGDARFLKAMDAASARAFQ 59 Query: 60 AS-GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 G S G TG +D A+ + WF ++ G L+R G ++T DG L++ Sbjct: 60 TERGPHLFSSAPGLLNQTGEPMDVAIAEEGWFFVQPEGGEPALSRRGDLRLTADGRLLNG 119 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKG----KVIATMGLYSVDMSQGFV 170 +G+ +LD A PI++P + V E G I Q G +V + ++ Sbjct: 120 AGE-AMLDPAMQPIELPPVRALI-VDETGRILYEPQDGPPGQQVEGPLIATTIPDGVTVR 177 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + I P P D V +G LE SN N+M E+ I L + F +I Sbjct: 178 KDPDGRIRAGGEPLPTPD-QRARVLQGVLEGSNVNTMEELVSSIELQRTFELNLRMISSA 236 Query: 231 EK 232 ++ Sbjct: 237 KE 238 >gi|148980301|ref|ZP_01815988.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] gi|145961320|gb|EDK26630.1| putative flagellar basal-body rod protein [Vibrionales bacterium SWAT-3] Length = 244 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 17/244 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M A+N+S+ DTVGF+ + ++ Sbjct: 1 MNPILFSAAKGAERTMLAQHVRANNLSHADTVGFKALME--HSTPMRLEGSGFLTSVTSR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFA---LESPRGIILTRDGRFKVTDDGSLVSA 117 + + G I T LD A+ GD + +E + TR G F++ +G L Sbjct: 59 TNSSINNFAQGEDIRTERPLDVAINGDGFITLEGVEDEPAELYTRAGNFRLDGNGQL--Y 116 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGFVR 171 G+ V+ P+ +P E +V G +S + + L + Q + Sbjct: 117 LGERRVMSTDG-PMVLP-DFEFVSVSSNGLVSITPIGGEASLEVGALKLVKPENEQ--MT 172 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 SG L + V V+ G+LE SN +S+ E+ ++ LT+++ ++ + Sbjct: 173 MHASGHFVPKDGQVLAEDFSVQVRSGYLEASNVSSLEELVSIMSLTRQYEMQIEVMASAD 232 Query: 232 KSML 235 + Sbjct: 233 EIAQ 236 >gi|326939385|gb|AEA15281.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis serovar chinensis CT-43] Length = 257 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVV---GAIKNDID 53 IG + QR++ ++N++N T GF+ + + + +I Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGVVTNIG 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG + V+ + I+IP+ + V G I+Q + Sbjct: 121 NSDRYLQTSSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEITQNNIARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|315180484|gb|ADT87398.1| hypothetical flagellar basal-body rod protein [Vibrio furnissii NCTC 11218] Length = 244 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 13/239 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + A+N+++ +TVGF+ ++ S+ + + ++ Sbjct: 1 MNPILFTAAKGAERVMLAQEVRANNLAHANTVGFK-SLMEHSDAMAVAGSGFQSSVT-TR 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSA 117 + + G+ + TG +LD + G +F++ G + +R G F+++ DG Sbjct: 59 TNSASTNFTPGAEVRTGRDLDVQIPGRGFFSVAGQAGEPEELYSRAGNFRLSSDGL--LL 116 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIATMGLYSVDMSQ-GFVRRE 173 G VL PI++P+ + N+ G IS G +GL + + + Sbjct: 117 LGDRQVLGEDG-PIEVPEF-QAINIASDGAISITPPGGGAEMQIGLLKLVNPEYADMTLH 174 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 SG+ L V V+ G+LE SN +S+ E+ M+ LT+++ + + Sbjct: 175 TSGLFVPKQGETLAFDPEVAVRSGYLEGSNVSSLDELVSMMALTRQYEMQVKAMASASE 233 >gi|146277707|ref|YP_001167866.1| hypothetical protein Rsph17025_1668 [Rhodobacter sphaeroides ATCC 17025] gi|145555948|gb|ABP70561.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 251 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 12/241 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTV-ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M + L + A + + A N++N GFR + + +F Sbjct: 1 MDRLIHTALNSL-ANLRDTRVIQAQNLANQTVPGFRRDLTNEGDPRFLKAMETASARAFQ 59 Query: 60 AS-GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA 117 G S G TG +D A+ + WF ++ G L+R G ++T +G LV+ Sbjct: 60 TERGPHLFSSAPGLLNQTGEPMDVAIAEEGWFFVQPEGGEPALSRRGDLRLTAEGQLVNG 119 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVR 171 +G+ +LD A PI++P + E G I G+ + + +V +R Sbjct: 120 AGE-AMLDQAMQPIELPA-VRSLVIDEVGRILYEPMDGAPGEEVEGPVIATVIPEGVALR 177 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 ++ G + +G LE SN N+M E+ I L + F +I + Sbjct: 178 KDADGQIRAGDEPLPAPDQRARILQGVLEGSNVNTMEELVSSIELQRTFELNLRMISAAK 237 Query: 232 K 232 + Sbjct: 238 E 238 >gi|206970637|ref|ZP_03231589.1| putative flagellar basal-body rod protein [Bacillus cereus AH1134] gi|206734273|gb|EDZ51443.1| putative flagellar basal-body rod protein [Bacillus cereus AH1134] Length = 257 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--IATMGLYSVDM- 165 D L ++SG + V+ + I+IP+ + V G + + I + +VD Sbjct: 121 NSDRYLQTSSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEATQNNIGRLQTKTVDAE 178 Query: 166 -SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|229160734|ref|ZP_04288726.1| Flagellar basal-body rod protein flgG [Bacillus cereus R309803] gi|228622749|gb|EEK79583.1| Flagellar basal-body rod protein flgG [Bacillus cereus R309803] Length = 257 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F V Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTV 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG + V+ + I+IP+ + V G I+Q + Sbjct: 121 NSDRYLQTSSGAF-VMGENNERIRIPEGVK-VAVQADGTLYDEITQNNIARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNNRLVQRENKSFTLAEGNIADLPNGTGIVKNHMLENSNVDMTKEMADLMASQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RIMTSFDKIYEKEANEI 255 >gi|30019815|ref|NP_831446.1| flagellar basal body rod protein FlgG [Bacillus cereus ATCC 14579] gi|218235496|ref|YP_002366457.1| flagellar basal body rod protein FlgG [Bacillus cereus B4264] gi|218896706|ref|YP_002445117.1| putative flagellar basal-body rod protein [Bacillus cereus G9842] gi|228907405|ref|ZP_04071263.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL 200] gi|228952155|ref|ZP_04114247.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958053|ref|ZP_04119788.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pakistani str. T13001] gi|229043528|ref|ZP_04191237.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH676] gi|229109228|ref|ZP_04238827.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-15] gi|229127099|ref|ZP_04256096.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-Cer4] gi|229149977|ref|ZP_04278203.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1550] gi|29895360|gb|AAP08647.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 14579] gi|218163453|gb|ACK63445.1| putative flagellar basal-body rod protein [Bacillus cereus B4264] gi|218540813|gb|ACK93207.1| putative flagellar basal-body rod protein [Bacillus cereus G9842] gi|228633499|gb|EEK90102.1| Flagellar basal-body rod protein flgG [Bacillus cereus m1550] gi|228656215|gb|EEL12056.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-Cer4] gi|228674238|gb|EEL29483.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-15] gi|228725750|gb|EEL76998.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH676] gi|228801570|gb|EEM48452.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807509|gb|EEM54036.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228852266|gb|EEM97062.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL 200] Length = 257 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG + V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTSSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|85058012|ref|YP_453714.1| flagellar basal-body rod protein FlgF [Sodalis glossinidius str. 'morsitans'] gi|84778532|dbj|BAE73309.1| flagellar basal-body rod protein FlgF [Sodalis glossinidius str. 'morsitans'] Length = 252 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A A + S A+N++N T GFR F + + V Sbjct: 1 MDRAIYTAMGAASAALTQQSVAANNLANAATTGFRAQLAAFRA--APVNGPTLATRTLVV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG 119 G +G LD AL+ W A+ P G TR+GR ++ G L + Sbjct: 59 PSVPGNDFSPGPINISGNNLDVALDQHGWLAVRLPDGGEAYTRNGRIEIDSAGGLRVQN- 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLYSVDMSQGFVR 171 Y +L S P+ + G G +S G I + L ++ +R Sbjct: 118 -YLLLGADSQPLTVLPGAA-VTFGPDGTLSVLGDGDEPKTLVQIGQLKLVRLEPDS--LR 173 Query: 172 RENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITT 225 ++SG+ + L + + G E SN + + M +MI + F Sbjct: 174 HDDSGLFNLTDTARAQRGAVLPADPTLRLTPGAFEGSNVSPVQTMVEMIGNARSFEMQMK 233 Query: 226 LIDENEKSMLEAIRNI 241 +I + A + Sbjct: 234 VISNVNDNA-RAGNQL 248 >gi|229069323|ref|ZP_04202613.1| Flagellar basal-body rod protein flgG [Bacillus cereus F65185] gi|229078954|ref|ZP_04211506.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock4-2] gi|228704368|gb|EEL56802.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock4-2] gi|228713810|gb|EEL65695.1| Flagellar basal-body rod protein flgG [Bacillus cereus F65185] Length = 257 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG + V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTSSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIGRLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNVANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|288554367|ref|YP_003426302.1| flagellar hook-basal body protein [Bacillus pseudofirmus OF4] gi|288545527|gb|ADC49410.1| flagellar hook-basal body protein [Bacillus pseudofirmus OF4] Length = 281 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 108/282 (38%), Gaps = 44/282 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M S L++++ T++ NM+N++T GF+ + FS+++ N+ Sbjct: 1 MNLSMISASVTMGQLQRKMDTLSHNMANSNTTGFKRREATFSDLLFQQVNNNTDTRYETG 60 Query: 57 ----------SFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALES-PRGII---LT 101 + + L E G+ +T LDFA+ + + +F ++S G LT Sbjct: 61 RLTPNGIRVGAGAKIAQTALRMEQGAIQNTDRRLDFAITQPNHFFEVQSVENGQAVNRLT 120 Query: 102 RDGRFKVTDD----GSL--VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI------S 149 R+G F + +D G L V+A+G+Y +LD +P + GE+ + Sbjct: 121 REGAFYLNEDPDNPGQLTIVNANGEY-LLDGGGNRFTLPMNFSDIQLSPTGELRVTLNDN 179 Query: 150 QKGKVIATMGLYSVDMSQGFV----------RRENSGISPNIPPTPLEDLSGVTVKRGFL 199 + + + L V EN G+ + G + + L Sbjct: 180 VTTEELGQVQLIHVLKPHLLEAVGDTHFTIPNLENLGLMDADMFEQVPGDEG-RLMQNAL 238 Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E SN N EM +++ + + + ++ M I I Sbjct: 239 EQSNVNIAQEMNELLQTQRHYQFNARALSMADE-MNGLINGI 279 >gi|257871307|ref|ZP_05650960.1| flagellar hook-basal body complex protein [Enterococcus gallinarum EG2] gi|257805471|gb|EEV34293.1| flagellar hook-basal body complex protein [Enterococcus gallinarum EG2] Length = 233 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 39/256 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M ++ L++R T + N++N +T G++ K F + + Sbjct: 1 MIRGLDVLSRNISLLQKRQETTSGNIANVNTTGYQA-KALFQSALDEVALHNYQSGPNAD 59 Query: 49 -KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + DI +S++ G+ TG DFAL + +F +++ G TR+G F Sbjct: 60 TRRDIGGLSLGTQLAGSTISQDQGAVKQTGQASDFALLSEGYFVVQNNAGQRLYTRNGDF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 V V+ G Y VL +S G A + S Sbjct: 120 TVNQQNQYVTQEG-YLVLGANGQ-----------------AVSALGP--ANFQIQSFP-P 158 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + + ++ N T +++ +++G LE +N + EM MI +++F + + Sbjct: 159 EALTTDGQNYVTSNAAGT---NVNAPVIQQGALEQANVSVADEMVAMIQTSREFEANQKV 215 Query: 227 IDENEKSMLEAIRNIA 242 + +++ +A+ + Sbjct: 216 LSSTNQTLQKAVNELG 231 >gi|229166627|ref|ZP_04294379.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH621] gi|228616881|gb|EEK73954.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH621] Length = 259 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 91/257 (35%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + Q ++ ++N++N T GF+ + +V + + Sbjct: 3 MNGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIG 62 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 63 SVDYAVVPAATHVNLVQGNIQMTNSPTDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTL 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L +ASG + V+ + I+IP+ + V G ++Q + Sbjct: 123 NSDRYLQTASGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDTE 180 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN VK LE+SN + EM ++ + + Sbjct: 181 TNARLVQRENKSFILAEGNIADLPNGTGIVKNHMLENSNVDMTKEMADLMTNQKMIQASQ 240 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 241 RIMTSFDKIYEKEANEI 257 >gi|229144385|ref|ZP_04272790.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST24] gi|228639016|gb|EEK95441.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST24] Length = 257 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG + V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTSSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIGRLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RVMTSFDKIYEKEANEI 255 >gi|317133466|ref|YP_004092780.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] gi|315471445|gb|ADU28049.1| flagellar hook-basal body protein [Ethanoligenens harbinense YUAN-3] Length = 234 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 30/252 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M +F G A+ + + + +A++++N +T G+ FS+++ + Sbjct: 1 MIQAFFGGAASLRSRQTAMDVIANDIANVNTAGYVQRDTDFSDLLYDSMVRPENPSYANE 60 Query: 56 --ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDG 112 S GSF+ TG+ L+FA G+ +FA+ +G++ TRDG F + Sbjct: 61 LEGSGAGVDAVVADASAGSFVQTGSLLNFAPRGEGFFAVRDAQGVVSYTRDGTFTAQPEN 120 Query: 113 ---SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 LV A G+ VLD I + Q G G+++ Q Sbjct: 121 GAAVLVDAQGR-TVLDAQGNAIAV----------------QNGVPQTQPGVFAFAFPQNL 163 Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 S + + +S V +G E SN + EMG MI + F ++ Sbjct: 164 TALGGSLFAASASSG-AAQVSDEGVLQGAYETSNVDLSSEMGNMIVTQRGFQMNARVVST 222 Query: 230 NEKSMLEAIRNI 241 ++ + + ++ Sbjct: 223 ADQ-IESYVNDL 233 >gi|222095395|ref|YP_002529455.1| flagellar basal body rod protein flgg [Bacillus cereus Q1] gi|221239453|gb|ACM12163.1| flagellar basal-body rod protein [Bacillus cereus Q1] Length = 267 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 102/267 (38%), Gaps = 29/267 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KF--SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + F + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGANGTTSFFVTSKNDETFLTRDGSFTI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------------VIA 156 D L ++SG Y V+D+ + I+IP+ F V GEI ++ VIA Sbjct: 121 NSDRYLQTSSGAY-VMDVNNERIKIPENVNFF-VSNNGEIYREVNDGTLQKPDIKRIVIA 178 Query: 157 TMGLYSVDMSQG--FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + +VD ++REN + VK LE+SN + EM ++ Sbjct: 179 QLQTKTVDAEANSRLMQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLM 238 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + ++ ++ +K + I Sbjct: 239 TDQRMISASQRVMTSFDKIYEKEANEI 265 >gi|157738173|ref|YP_001490857.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] gi|157700027|gb|ABV68187.1| flagellar distal rod protein FlgG [Arcobacter butzleri RM4018] Length = 239 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 106/254 (41%), Gaps = 31/254 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI---KVKFSEVVGAIKNDID---- 53 M A+ + RL +++N++N +T+GF+ + F+ + +++ Sbjct: 1 MNQGVYPLAASMINQINRLDQISNNLANVNTLGFKQEGTTETTFNYYLDKMESQQKLMLK 60 Query: 54 ---QKISFVASGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKV 108 + Y + E+G + TG LDFAL D +F +++ G I+ TRDG FK Sbjct: 61 ESVVTNNIPKIDSRYTNAEMGPIVMTGNSLDFALNEPDTFFKIQNENGDIVYTRDGAFK- 119 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 DG LV ++G VL+ + I + E G SQ +G+ + Sbjct: 120 NLDGFLVDSNGN-NVLNADNEAIVV----------EDGFESQ-------IGVAKTPYTNL 161 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +N+ + N+ + + + RG +E SN NS+ M ++I ++F+ I Sbjct: 162 EKMGDNTYLVKNVDEAEQIENNDGRIVRGAVEQSNVNSVTAMVELIDAHRRFDQSQRAIK 221 Query: 229 ENEKSMLEAIRNIA 242 + I + Sbjct: 222 TIDDLNAGLIEKVG 235 >gi|229017058|ref|ZP_04173977.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1273] gi|229023239|ref|ZP_04179749.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1272] gi|228738033|gb|EEL88519.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1272] gi|228744231|gb|EEL94314.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1273] Length = 267 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 103/268 (38%), Gaps = 31/268 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + QR++ ++N++N T GF+ + +V + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGSTTNIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 V +++ G+ T + DF L+ D +F LTRDG F Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLD-DGTAGTTSFFVTSKNDETFLTRDGSFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------------VI 155 + D L ++SG Y V+D+ + I+IP+ + F V GEI ++ VI Sbjct: 120 INSDRYLQTSSGAY-VMDVNNERIRIPENVDFF-VSNNGEIYREVNDGTLQKPDIKRIVI 177 Query: 156 ATMGLYSVD--MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 A + +VD + ++REN + VK LE+SN + EM + Sbjct: 178 AQLQTKTVDAEANARLMQRENKSFTLAEGNIADLPNGTGAVKNHMLENSNVDMTKEMADL 237 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 + + + ++ +K + I Sbjct: 238 MTSQKMIQASQRVMTSFDKIYEKEANEI 265 >gi|291528559|emb|CBK94145.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1] Length = 247 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 14/209 (6%) Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGII---L 100 + ++ V G+ Y + GSF T D A+ G +FA+ G Sbjct: 39 YGLHKNLGSMTYGVHLGETYTDWDEGSFKVTDNPTDLAIGGKGFFAVAFTDKSGQTSVKY 98 Query: 101 TRDGRFKVTDDGSLVSASGKYPV-------LDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 TRDG FKV DG LV+A G + + D +E F+V G I+Q + Sbjct: 99 TRDGAFKVNADGYLVTADGDHVLNATGALSGDGGEANWVKVDPNEKFSVNSLGYITQNNQ 158 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 ++ T+G+ VD + + + + + +++G LE SN N + EM M Sbjct: 159 LVGTIGVVDVDNYDYIEKYGENLYNLTAGGNIIASDA--EIEQGALETSNVNVVNEMVNM 216 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIRNIA 242 I + + + + +I ++++ +A+ N+ Sbjct: 217 ITIQRAYEAGQKVITSIDETLDKAVNNVG 245 >gi|75762829|ref|ZP_00742649.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900355|ref|ZP_04064584.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL 4222] gi|74489683|gb|EAO53079.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859242|gb|EEN03673.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis IBL 4222] Length = 259 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 3 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 62 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 63 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTL 122 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG + V+ + I+IP+ + V G ++Q + Sbjct: 123 NSDRYLQTSSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDAE 180 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 181 TNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQ 240 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 241 RVMTSFDKIYEKEANEI 257 >gi|296274029|ref|YP_003656660.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] gi|296098203|gb|ADG94153.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] Length = 241 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 101/255 (39%), Gaps = 29/255 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK---FSEVV------GAIKND 51 M AA + R+ TV++N++N+ T+GF+ + F+ + G Sbjct: 1 MNQGMYPLAAAMVNQINRVDTVSNNLANSRTIGFKQENLAEGTFNNYLLKANLEGKKPEY 60 Query: 52 IDQKISFVA-SGKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGII-LTRDGRFKV 108 I++ + V ++++ G + TG LDFAL+ +FA+ G + T+DG FK Sbjct: 61 INELTNKVPKIDQKFIDSSQGPIVQTGNNLDFALKEPQTFFAVLDQNGNVQYTKDGSFK- 119 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-IATMGLYSVDMSQ 167 DG LV ++G VL PI I E G G I L + Sbjct: 120 NSDGFLVDSNGN-NVLSGDGEPIAI----------EDGFKQAIGVFNIDYKNLEKFGDNN 168 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 ++ E E+ + + +G LE SN NS+ M Q+I + + I Sbjct: 169 YKLKDE----QQVAVQVQAEENNENFILQGSLEQSNVNSVMAMVQLIEAQRSYEQAQKGI 224 Query: 228 DENEKSMLEAIRNIA 242 + I+ + Sbjct: 225 TGIDSMNKTIIQKLG 239 >gi|167750706|ref|ZP_02422833.1| hypothetical protein EUBSIR_01684 [Eubacterium siraeum DSM 15702] gi|167656385|gb|EDS00515.1| hypothetical protein EUBSIR_01684 [Eubacterium siraeum DSM 15702] Length = 235 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 107/238 (44%), Gaps = 14/238 (5%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKISFVAS--GKEYL 66 L ++ L +++N++N +T G++ ++ F E + + N FV + Sbjct: 1 MLNHQRSLDAISNNLTNINTAGYKKDEIRMNTFQEELILVSNRRKTSGKFVQTYVDTSKS 60 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSL-VSASGKYPVL 124 + E SF T + D ++G+ +F ++ G + TR G+F++ +G L ++ SG+ VL Sbjct: 61 NLEQSSFEFTESPFDIGIQGNVYFNIQGTNGNVYQTRCGQFELDGEGYLCLNDSGR--VL 118 Query: 125 DMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 I I D F V +G I ++ G+VI + L + + + N+ S + Sbjct: 119 GQNGE-IYIGNDD--FIVDNEGNILNENGEVIERLRLSYIPENADVTKVGNNLFSYDGNM 175 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T + + + +G E SN ++ E+ ++ + F + + ++ + A I Sbjct: 176 T-IPEGEKYDIIQGCFEKSNVDANKEITSLMETQRLFEASSAVLKYMDTINGRAASEI 232 >gi|229029452|ref|ZP_04185535.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1271] gi|228731911|gb|EEL82810.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH1271] Length = 257 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIK------NDID 53 IG + QR++ ++N++N T GF+ + +V + +I Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 STDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGISSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L ++SG + V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTSSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDTE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + ++ Sbjct: 179 TNARLVQRENKSFALAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQKMISASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RIMTSFDKIYEKEANEI 255 >gi|291558217|emb|CBL35334.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a] Length = 235 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 108/238 (45%), Gaps = 14/238 (5%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKISFVAS--GKEYL 66 L ++ L +++N++N +T G++ ++ F E + + N FV + Sbjct: 1 MLNHQRSLDAISNNLTNINTAGYKKDEIRMNTFQEELILVSNRRKTSGKFVQTYVDTSKS 60 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSL-VSASGKYPVL 124 + E SF T + D ++G+ +F ++ G + TR G+F++ +G L ++ SG+ VL Sbjct: 61 NLEQSSFEFTESPFDIGIQGNVYFNIQGTNGNVYQTRCGQFELDGEGYLCLNDSGR--VL 118 Query: 125 DMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 + I I D F V +G I ++ G+VI + L + + + N+ S + Sbjct: 119 GQSGE-IYIGNDD--FIVDNEGNILNENGEVIEKLRLSYIPENADVTKVGNNLFSYDGDM 175 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T + + + +G E SN ++ E+ ++ + F + + ++ + A I Sbjct: 176 T-IPEDEKYDIIQGCFEKSNVDANKEITSLMETQRLFEASSAVLKYMDTINGRAASEI 232 >gi|297584044|ref|YP_003699824.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] gi|297142501|gb|ADH99258.1| fagellar hook-basal body protein [Bacillus selenitireducens MLS10] Length = 424 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 17/146 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------KND 51 M S G+ + +L + +N+SN +T GF+ +V F+++V Sbjct: 1 MIRSLYSGIGGMNNFQTKLDVIGNNISNVNTFGFKKGRVTFNDLVSQQLAGASSPQEGER 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 V G S GS STG +LD A+ GD +F + TR G F Sbjct: 61 GGTNPRQVGLGGSTASIDTINTQGSLQSTGRDLDMAISGDGFFQVADGGQNFYTRAGNFY 120 Query: 108 VTDDGSLVSASG----KYPVLDMASV 129 + ++G LV+A G Y V D ++ Sbjct: 121 LDENGMLVNADGLRLQGYGVGDDGAI 146 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENSGIS-PNIPPTPLEDLSG 191 E + V E GEI+ G+V + + L + + G + ++ N P L+G Sbjct: 310 ESYTVSETGEINGIFSNGEVRLLGQVALVNFNNPSGLSKAGSNLFEVSNNSGEPQVGLAG 369 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ LE SN + E +MI + F + T +I +++ + E I Sbjct: 370 IGGRGSLVGATLEMSNVDLSEEFAEMIVSQRGFQANTRMITTSDEILQELIN 421 >gi|229189870|ref|ZP_04316880.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 10876] gi|228593544|gb|EEK51353.1| Flagellar basal-body rod protein flgG [Bacillus cereus ATCC 10876] Length = 267 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 60/267 (22%), Positives = 103/267 (38%), Gaps = 29/267 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KF--SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + F + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 S V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------------VIA 156 D L ++SG Y V+D+ + I+IP+ E F V GEI ++ VIA Sbjct: 121 NSDRYLQTSSGAY-VMDVNNERIRIPENVEFF-VSNNGEIYREVNDGTLQKPDIKRIVIA 178 Query: 157 TMGLYSVDM--SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + +VD + V+REN + VK LE+SN + EM ++ Sbjct: 179 QLQTKTVDAETNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLM 238 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + ++ +K + I Sbjct: 239 TDQKMIQASQRVMTSFDKIYEKEANEI 265 >gi|56965597|ref|YP_177331.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] gi|56911843|dbj|BAD66370.1| flagellar basal-body rod protein [Bacillus clausii KSM-K16] Length = 262 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 26/259 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQKISFVAS 61 + A L+ ++ T+++NM+N +T GF+ F++V+ + N+ Q + Sbjct: 5 HTAAATLSQLQAKIDTISNNMANAETTGFKRRSASFADVLTSEYLNQPNENRQTPHGLRV 64 Query: 62 G------KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTD---- 110 G + + E G+ TG ELDFAL E D ++ +E+ G LTRDG F + Sbjct: 65 GTGAKLAQTQIQLEQGTLRETGRELDFALTEADLFYNIETVAGTRLTRDGTFYFSPQAVG 124 Query: 111 DG-SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVD 164 +G LV++ G VLD I +P G + + + + + L V Sbjct: 125 NGLELVTSDGN-RVLDSDGEAIVMPGDTVSLE-WRDGNLFAQLRNGGEQQVGSFALTRVL 182 Query: 165 MSQGFVRRENS-GISPNIPPTPLE-DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 Q N+ + P +P E + +K+ LE +N + EM +++ + Sbjct: 183 RPQTLESGGNNLYVLPELPGVSEEVVAADEHMKQNMLEQANVDLGLEMAELMETQRLLQF 242 Query: 223 ITTLIDENEKSMLEAIRNI 241 + M NI Sbjct: 243 QARAYSFADD-MAGLANNI 260 >gi|291562042|emb|CBL40858.1| fagellar hook-basal body proteins [butyrate-producing bacterium SS3/4] Length = 263 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 106/264 (40%), Gaps = 26/264 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------Q 54 M SF G A ++LS V++N++N + GF+ FSE++ ND + Q Sbjct: 1 MNMSFYTGAAGAGQFTKKLSVVSNNLANINNTGFKPKTAAFSELIHYNLNDSENAQTELQ 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESP--RGIILTRDGRFKVT-- 109 S + + TG E D+A+ E +A+F ++ P I TR+G F Sbjct: 61 TGSGARVERTWTDFSTAGATQTGKEYDYAIMEPNAFFMIQDPASGEITYTRNGHFHRGER 120 Query: 110 DDG-SLVSASGKYPVLDMASVPIQIPQKD-----------EIFNVGEKGEISQKGKVIAT 157 +DG L + GK VLD P+++ D + + + ++ + Sbjct: 121 EDGFYLTTEDGKL-VLDQNRQPLKLEVTDVEKLQEESESEDDDYDTDDTDSTEDDTDLPK 179 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 + +Y+ + ++ S +++G LE+S + EM +I Sbjct: 180 VSVYTFSNPSRLLSVGDN-EYKAQDGMEASLKSDAVLQKGALENSGTDMAKEMVHVIECQ 238 Query: 218 QKFNSITTLIDENEKSMLEAIRNI 241 + F+ +I ++ + I ++ Sbjct: 239 RAFSYAVKMITTSDD-IEGTINSL 261 >gi|182412238|ref|YP_001817304.1| hypothetical protein Oter_0414 [Opitutus terrae PB90-1] gi|177839452|gb|ACB73704.1| protein of unknown function DUF1078 [Opitutus terrae PB90-1] Length = 312 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 98/303 (32%), Gaps = 69/303 (22%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 G++A + L + N++N +T +++ + + S V G Sbjct: 7 LTSGVSAVRTFSKGLEVIGSNIANVNTTAYKSSSATYGDTFSNTLRAATATDSAVQIGTG 66 Query: 65 Y------LSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSA 117 + G ++TG D + G +F ++ G TRDG F G L + Sbjct: 67 VQVAGISTNFTQGPLVATGNNNDLGISGRGYFVVQDATGNQFATRDGSFHFDTGGYLKNV 126 Query: 118 SGKYPVLDMASVPIQIP--------------------QKDEIFNVGEKGEISQKG----- 152 G Y VL+ P+Q+ + ++G G I+ Sbjct: 127 QG-YNVLNDMGQPVQVSGLKKTYDATGVHDGYEPAPYSELASVSIGSDGTITAYATDGTS 185 Query: 153 -----------------------------KVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 ++G+ SV +R+ N+ + + Sbjct: 186 VLYGRTYDLADTSVPPAPDPVLDPANPAVNPTRSIGVMSVSDESRLMRQANNLYNFSATG 245 Query: 184 TPLEDLSGV-------TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + + D V ++ G LE SN + + +I + F + + LI ++ + + Sbjct: 246 STVADNMEVPGVNGTGKIQTGVLEQSNVDLTDQFSNLITTQRSFQAGSRLITVSDSVLED 305 Query: 237 AIR 239 + Sbjct: 306 IVN 308 >gi|229132600|ref|ZP_04261448.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST196] gi|228650832|gb|EEL06819.1| Flagellar basal-body rod protein flgG [Bacillus cereus BDRD-ST196] Length = 257 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + Q ++ ++N++N T GF+ + +V + + Sbjct: 1 MNGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGATTNIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNVQMTNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L +ASG + V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTASGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIGRLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNLADLPNGTGIVKNHMLENSNVDMTKEMADLMSSQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RIMTSFDKIYEKEANEI 255 >gi|229058421|ref|ZP_04196805.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH603] gi|228719930|gb|EEL71520.1| Flagellar basal-body rod protein flgG [Bacillus cereus AH603] Length = 257 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 19/257 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + Q ++ ++N++N T GF+ + +V + + Sbjct: 1 MNGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVD 164 D L +ASG + V+ + I+IP+ + V G ++Q + Sbjct: 121 NSDRYLQTASGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIGRLQTKTVDAE 178 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + V+REN + VK LE+SN + EM ++ + + Sbjct: 179 TNARLVQRENKSFTLAEGNLADLPNGTGIVKNHMLENSNVDMTKEMADLMSSQKMIQASQ 238 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 239 RIMTSFDKIYEKEANEI 255 >gi|227873523|ref|ZP_03991768.1| possible flagellar basal body rod protein [Oribacterium sinus F0268] gi|227840613|gb|EEJ50998.1| possible flagellar basal body rod protein [Oribacterium sinus F0268] Length = 263 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 106/263 (40%), Gaps = 24/263 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------Q 54 M SF +G A ++++ +++N++N + F+ FS+++ ND Q Sbjct: 1 MNMSFYVGALGADASQKKMGVISNNLANINNTAFKPKNAIFSDLINYNLNDSPEAKTDLQ 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESP--RGIILTRDGRFK---- 107 + A + +F +TG D+A+ +A+F L+ P I TR+G F Sbjct: 61 AEAGTAVVRTNTEYSPAAFHTTGQPNDYAIGNANAFFKLQDPSSGEITYTRNGHFHAGEM 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKD--EIFNVGEKGEISQKG-----KVIATMGL 160 L + SGK+ VLD + I G+ G + +V +G+ Sbjct: 121 PDGKFYLFTESGKH-VLDENGKKMLADDTALKAIEAAGQTGGNTANANNATEEVKQKIGV 179 Query: 161 YSVDMSQGFVRRENS--GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 Y+++ V + ++ I P + ++ G LE S + EM ++I + Sbjct: 180 YTINYPSRLVNKGDNELAIRPGDQNNKDSVIQNPILESGTLESSGTDMAKEMTRLIESQR 239 Query: 219 KFNSITTLIDENEKSMLEAIRNI 241 F ++ +++ + I + Sbjct: 240 AFTYALKMVQTSDE-VEGTINQL 261 >gi|30261777|ref|NP_844154.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Ames] gi|47527010|ref|YP_018359.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. 'Ames Ancestor'] gi|49184611|ref|YP_027863.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Sterne] gi|65319054|ref|ZP_00392013.1| COG4786: Flagellar basal body rod protein [Bacillus anthracis str. A2012] gi|167633188|ref|ZP_02391513.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0442] gi|167638782|ref|ZP_02397057.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0193] gi|170686326|ref|ZP_02877548.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0465] gi|170706443|ref|ZP_02896903.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0389] gi|177650448|ref|ZP_02933415.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0174] gi|228914350|ref|ZP_04077965.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229121324|ref|ZP_04250555.1| Flagellar basal-body rod protein flgG [Bacillus cereus 95/8201] gi|229600237|ref|YP_002866164.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0248] gi|254683274|ref|ZP_05147135.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. CNEVA-9066] gi|254723857|ref|ZP_05185643.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. A1055] gi|254734627|ref|ZP_05192339.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Western North America USA6153] gi|254741036|ref|ZP_05198724.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Kruger B] gi|254755279|ref|ZP_05207313.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Vollum] gi|254759816|ref|ZP_05211840.1| flagellar basal body rod protein FlgG [Bacillus anthracis str. Australia 94] gi|30256005|gb|AAP25640.1| putative flagellar basal-body rod protein [Bacillus anthracis str. Ames] gi|47502158|gb|AAT30834.1| putative flagellar basal-body rod protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178538|gb|AAT53914.1| flagellar basal-body rod protein, putative [Bacillus anthracis str. Sterne] gi|167513246|gb|EDR88617.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0193] gi|167531226|gb|EDR93904.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0442] gi|170128541|gb|EDS97408.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0389] gi|170670023|gb|EDT20764.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0465] gi|172083592|gb|EDT68652.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0174] gi|228662169|gb|EEL17778.1| Flagellar basal-body rod protein flgG [Bacillus cereus 95/8201] gi|228845344|gb|EEM90380.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264645|gb|ACQ46282.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0248] Length = 257 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 94/258 (36%), Gaps = 21/258 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 S V +++ G+ T ++ DF L+ D +F LTRDG F Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSDTDFLLD-DGTAGTASFFVTSKNNETFLTRDGSFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSV 163 + D L + SG + V+ + I+IP+ + V G ++Q Sbjct: 120 LNSDRYLQTTSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGA 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + ++REN + TVK LE+SN + EM ++ + ++ Sbjct: 178 EANNRLIQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQRMISAS 237 Query: 224 TTLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 238 QRVMTSFDKIYEKEANEI 255 >gi|254473478|ref|ZP_05086875.1| flagellar hook protein FlgE [Pseudovibrio sp. JE062] gi|211957594|gb|EEA92797.1| flagellar hook protein FlgE [Pseudovibrio sp. JE062] Length = 397 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 4/202 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N ++ A +LSTVADN+SN +TVG++ K FS +VG+ + V + Sbjct: 7 MNTSVSGMNAQSNKLSTVADNISNANTVGYKRYKTAFSSLVGSGGTS-GHESGIVNTTVV 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 ++ G+F T D A+ G +F ++ +G TR G F + +G +V++ G Y + Sbjct: 66 QTVRQQGAFNFTSRGTDLAINGKGFFQVQDSQGSTYYTRAGDFVLDKNGQMVNS-GGYKL 124 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP 183 L P+ + ++ +GE+ + + F + + Sbjct: 125 LSAGGAPVTVDLNTPVWQASSEGELGVNLASSTPVRTGAPSYPGNFDYKTSVSAYDQNGN 184 Query: 184 TPLEDLSGVTVKRGFLEDSNAN 205 DL + + S + Sbjct: 185 VVKIDLVYSKIGQNMT-GSTVD 205 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 66/175 (37%), Gaps = 19/175 (10%) Query: 81 DFALEGDAWFALESPRGIILT-RDG-RFKVTDDGSLVSASGKYPV--LDMASVPIQIPQK 136 D +GD SP + T +G + + V+A K+ V +D+ P Sbjct: 227 DLVFDGDGTLQTGSPDELAFTVPNGETLTLDLSKT-VTAGDKFSVNKVDVDGYG---PST 282 Query: 137 DEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLS 190 + + G + K++ + + + G + N + + P Sbjct: 283 IKTIRIEADGRVFGVYEGSAEKLLDQIQIVNFSNPDGLQAKSGNVYAATDASGDPAVGFP 342 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G ++ G +E SN + E+ +M+ + +++ T + + + + + E + N+ Sbjct: 343 GDNGFGSLYSGAVEGSNVDLAAELTEMVQAQRTYSANTKVFNASSELLQE-LNNL 396 >gi|49480334|ref|YP_035891.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331890|gb|AAT62536.1| flagellar basal-body rod protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 257 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 21/258 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 S V +++ G+ T ++ DF L+ D +F LTRDG F Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSDTDFLLD-DGTAGTASFFVTSKNNETFLTRDGSFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSV 163 + D L + SG + V+ I+IP+ + V G ++Q Sbjct: 120 LNSDRYLQTTSGAF-VMGENHERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGA 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + ++REN + TVK LE+SN + EM ++ + ++ Sbjct: 178 EANNRLIQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQRMISAS 237 Query: 224 TTLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 238 QRVMTSFDKIYEKEANEI 255 >gi|160896079|ref|YP_001561661.1| flagellar basal body FlaE domain-containing protein [Delftia acidovorans SPH-1] gi|160361663|gb|ABX33276.1| flagellar basal body FlaE domain protein [Delftia acidovorans SPH-1] Length = 423 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 15/197 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A + L + N++N +T GF++ + +F+E V + + S + Sbjct: 2 GFQQGLSGLNAASKNLDVIGHNIANANTTGFKSSRAEFAEAVASAVGSASGQNSGIGVNV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 ++++ G +TG LD A+ G+ +F + P G TR G F + G+L + G Sbjct: 62 AAVTQQFRQGPITTTGNNLDVAINGNGFFVVRQPDGSTAYTRAGNFGLDKQGNLKTVQGD 121 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRRENSG 176 + P V G+ + G+ IA +D+S R Sbjct: 122 NVMG--------YPVDATTGKVLAGGQPVPMVFPSGQPIAAKTTTKIDVSLNLDARATPA 173 Query: 177 ISPNIPPTPLEDLSGVT 193 + P+ T Sbjct: 174 AGNSTATPPVPATPRAT 190 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----EDL 189 NVG G I + + L + +QG ++ P E Sbjct: 312 INVGNDGSIVATYSNGVTRTEGQLALAAFTNTQGLGAVGDNKWVETSDSGPALNGTAESG 371 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +++ G LEDSN + E+ M+ + + + I ++ + Sbjct: 372 TFGSLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVFSTLVN 421 >gi|152975186|ref|YP_001374703.1| flagellar basal body rod protein FlgG [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023938|gb|ABS21708.1| flagellar basal body rod protein [Bacillus cytotoxicus NVH 391-98] Length = 257 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 94/258 (36%), Gaps = 21/258 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 IG + Q ++ A+N++N T GF+ + + S Sbjct: 1 MNGIYIGSMGMMNYIQHINVHANNVANAQTPGFKAENLTSKVFDSQNTYRLGDGPSTSVG 60 Query: 62 GKEY--------LSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 +Y ++ GS T DF L+ D +F LTRDG+F Sbjct: 61 TTDYAVVPAATHVNLIQGSVQITNRPTDFYLD-DGTSGTASFFVTSKGGETFLTRDGQFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG----EISQKGKVIATMGLYSV 163 + +D L ++SG Y VL I+IP+ + V E G +SQ + + Sbjct: 120 INEDRYLQTSSGAY-VLGENHERIRIPEGTK-VKVQEDGMLYDAVSQNHIARLQTKMVNT 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 +++ V+REN + V+ LE+SN + EM ++ + + Sbjct: 178 EVNARLVQRENKSFTLAEGDIADLPNGTGAVRNYMLENSNVDMTKEMADIMTNQKMVQAS 237 Query: 224 TTLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 238 QRIMTSFDKIYEKEANEI 255 >gi|205373385|ref|ZP_03226189.1| flagellar hook protein FlgE [Bacillus coahuilensis m4-4] Length = 426 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 21/183 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDI 52 M S G++ + +L + +N++N +T GF+ +V F +++ +N Sbjct: 1 MLRSMYSGISGMKNAQTKLDVIGNNIANVNTYGFKKGRVTFQDLMNQTMSGATTPTENRG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 Q + G S GS +TG LD A+ GD +F + + + + TR G F + Sbjct: 61 GQNAKQIGLGGTIASIDIISTQGSLQTTGRSLDVAISGDGYFVVRNGQNEMYTRAGNFYL 120 Query: 109 TDDGSLVSASGKYP---------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 +GSLV +G V+D + + D E++ G + A+ Sbjct: 121 DSNGSLVDGNGNLIQGYQADANGVIDYGGMTDIVIDSDSTMAPRSTSEVTFNGNLKASAP 180 Query: 160 LYS 162 +Y Sbjct: 181 IYD 183 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISP----NIPPTPLED 188 E F + GEI G+V I+ + + + + G + + + + +P + + Sbjct: 313 ESFTISSSGEINGIYSNGEVQAISQLVMATFSNAGGLLSQGGNTFTASNNSGLPNYGIAN 372 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E +MI + F + T +I +++ + E + Sbjct: 373 EGRGAIQSGSLEMSNVDLSEEFTEMITAQRSFQANTRIITTSDEILQELVN 423 >gi|182418416|ref|ZP_02949710.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521] gi|237666817|ref|ZP_04526802.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377798|gb|EDT75342.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521] gi|237658016|gb|EEP55571.1| flagellar basal body rod protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 259 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 116/261 (44%), Gaps = 23/261 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT---IKVKFSEVVGA---------- 47 M F ++ + L+ T+ +N++N + G++ K F EV+ + Sbjct: 1 MIRGFYNSVSGLITLQNEEETITNNITNVNNNGYKKRLLTKQSFDEVMISNRQKLSGDKY 60 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 ++N+I V + GSF ST + DFA++G +F + G + TRDG F Sbjct: 61 VRNNIGTMNLGVKTSDVETIFTQGSFKSTDKQTDFAIDGRGFFVARNANGQQVYTRDGNF 120 Query: 107 KVTDDGSLVSASGKYPVLDMAS----VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 KV G L++ G + + + PI + + F++ I G V AT L + Sbjct: 121 KVNQQGYLITNDGCEVMGNNNTTGATEPIYV--GNMNFSLDSNNNIDLAG-VGATHKLVT 177 Query: 163 VD-MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 VD ++ + E G + P+ + + V V + LE SN +S EM +++ + ++F Sbjct: 178 VDFDNEDYKNLEPLGDNYVTTANPIYN-ARVNVVQNALESSNVDSTDEMIKLMQVKRQFE 236 Query: 222 SITTLIDENEKSMLEAIRNIA 242 + I ++++ +A + Sbjct: 237 TNQKFIKMQDETVQKATTELG 257 >gi|323165587|gb|EFZ51374.1| flagellar basal-body rod protein flgG [Shigella sonnei 53G] Length = 143 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 14/129 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 58 ------FVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + +G ++ E G+ T D A++G +F + P G TRDG F Sbjct: 61 TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120 Query: 107 KVTDDGSLV 115 +V +G LV Sbjct: 121 QVDQNGQLV 129 >gi|52143687|ref|YP_083142.1| flagellar basal body rod protein FlgG [Bacillus cereus E33L] gi|51977156|gb|AAU18706.1| flagellar basal-body rod protein [Bacillus cereus E33L] Length = 257 Score = 141 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 92/258 (35%), Gaps = 21/258 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 S V +++ G+ T + DF L+ D +F LTRDG F Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSV 163 + D L + SG + V+ + I+IP+ + V G ++Q Sbjct: 120 LNSDRYLQTTSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGA 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + V+REN + VK LE+SN + EM ++ + ++ Sbjct: 178 EANNRLVQRENKSFTLAEGNIDDLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISAS 237 Query: 224 TTLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 238 QRVMTSFDKIYEKEANEI 255 >gi|298487854|ref|ZP_07005894.1| Flagellar basal-body rod protein flgF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157579|gb|EFH98659.1| Flagellar basal-body rod protein flgF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 258 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 14/173 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSAGAMVETGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVD 164 PV+ PI +P + + +G G IS Q + + L D Sbjct: 119 -LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVKPD 168 >gi|88858143|ref|ZP_01132785.1| flagellar hook protein [Pseudoalteromonas tunicata D2] gi|88819760|gb|EAR29573.1| flagellar hook protein [Pseudoalteromonas tunicata D2] Length = 492 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 18/156 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L A+N++N +T GF+ + +F++V N Q V + Sbjct: 2 SFNIALSGLKAAQKDLDVTANNIANVNTYGFKESRAEFADVFSTSLFSNAKTQNGEGVLT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVSAS 118 GS + T LD A+ G+ +F R TR G FK+ D LV+A Sbjct: 62 QVVAQQFHQGSLLFTSNALDMAINGNGFFVTTDSPLSRDFTYTRSGAFKLDADNRLVTAG 121 Query: 119 GKY----PVLDMA---------SVPIQIPQKDEIFN 141 G + PV + + PIQIP + Sbjct: 122 GDFLQGLPVNEDGSVKSVSLSTTAPIQIPDSAGSPS 157 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----EDL 189 ++G G I + I+ + L QG + N+ +P+ + Sbjct: 381 ISIGGDGLIEAKYSNGDAQAISKVALARFPNEQGLTQIGNTSWTPSRESGEALAGEPDSG 440 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +++ G LE +N N E+ +I + F + + ++ N + ++ Sbjct: 441 TFGSIRSGTLEQANVNLTGELVDLIAAQRNFQANSRALEVNNQISQNILQ 490 >gi|161511182|ref|NP_777929.2| flagellar basal body rod protein FlgF [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395817|sp|Q89AH8|FLGF_BUCBP RecName: Full=Flagellar basal-body rod protein flgF Length = 248 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 118/251 (47%), Gaps = 17/251 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M++ N + + + + + +A+N++N T GF++ ++ ++ + K+ Q+ +F+ Sbjct: 1 MESIVNAIITSTNKIFENQARIANNITNISTPGFKSE-LELKILLPSQKDQNSQEDNFLY 59 Query: 61 SGKEYLSKEVGSFISTGTELDFAL-EGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSAS 118 K+Y +K G+ T LD A+ + + WF ++ P+ I T++G FK+ + L + Sbjct: 60 --KQYKNKNQGTLRRTNQPLDCAIIDKNDWFVIKIDPKTIAYTKNGHFKINSNRQLTVQN 117 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRE 173 +PVL I IP+ + I + G I+ +A L + D++ + Sbjct: 118 --HPVLGEDGE-IFIPKNENIV-ISSDGYINIIKNNVLQHKVAQFKLKNFDINDLTYKTN 173 Query: 174 NSGI---SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + + T +++S + + G LEDSN N M +MI +KF+ ++ Sbjct: 174 GLYLLNKNNKLNHTNHKNVSNIKLVSGILEDSNVNLEENMVEMISNARKFDMQIKILSMY 233 Query: 231 EKSMLEAIRNI 241 ++ A R + Sbjct: 234 NENTQAASRFL 244 >gi|229096257|ref|ZP_04227230.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-29] gi|229115212|ref|ZP_04244622.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-3] gi|228668352|gb|EEL23784.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock1-3] gi|228687217|gb|EEL41122.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-29] Length = 267 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 102/267 (38%), Gaps = 29/267 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + QR++ ++N++N T GF+ + +V + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNVQITNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------------VIA 156 D L ++SG Y V+D+ + I+IP+ F V GEI ++ VIA Sbjct: 121 NSDRYLQTSSGAY-VMDVNNERIRIPENVNFF-VSNNGEIYREINEGTLQKPDIKRIVIA 178 Query: 157 TMGLYSVDM--SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + +VD + V+REN + VK LE+SN + EM ++ Sbjct: 179 QLQTKTVDAETNARLVQRENKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLM 238 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + ++ +K + I Sbjct: 239 SSQKMIQASQRIMTSFDKIYEKEANEI 265 >gi|229102371|ref|ZP_04233079.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-28] gi|228681018|gb|EEL35187.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-28] Length = 267 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 58/267 (21%), Positives = 102/267 (38%), Gaps = 29/267 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + QR++ ++N++N T GF+ + +V + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAMTNIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKV 108 V +++ G+ T + DF L+ A +F LTRDG F + Sbjct: 61 SVDYAVVPAATHVNLVQGNVQITNSATDFFLDDGAAGTSSFFVTSKNDETFLTRDGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK------------VIA 156 D L ++SG Y V+D+ + I+IP+ F V GEI ++ VIA Sbjct: 121 NSDRYLQTSSGAY-VMDVNNERIRIPENVNFF-VSNNGEIYREINEGTLQKPDIKRIVIA 178 Query: 157 TMGLYSVDM--SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + +VD + V+REN + VK LE+SN + EM ++ Sbjct: 179 QLQTKTVDAETNARLVQRENKSFTLAEGNIANLPNGTGIVKDHMLENSNVDMTKEMADLM 238 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 + + ++ +K + I Sbjct: 239 SSQKMIQASQRIMTSFDKIYEKEANEI 265 >gi|241766920|ref|ZP_04764726.1| flagellar basal body FlaE domain protein [Acidovorax delafieldii 2AN] gi|241362624|gb|EER58472.1| flagellar basal body FlaE domain protein [Acidovorax delafieldii 2AN] Length = 425 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A + L + N++N +T GF+ + +F+E+V + + + Sbjct: 2 SFQQGLSGLNASSKNLDVIGHNIANANTTGFKASRAEFAEMVASAIGSAGGNNAGIGVET 61 Query: 64 EYL--SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 + G+ TG LD A+ G+ +F L+ P G TR G FK+ G++V+ Sbjct: 62 ANVAQQFTQGNLTITGNSLDVAINGNGFFTLQQPDGSPAYTRAGNFKLDKTGNMVTND-N 120 Query: 121 YPVLDMASVPIQ 132 V+ P+ Sbjct: 121 AKVMGYPVDPLT 132 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTP---- 185 I + I G +G+ + L S +QG + + P Sbjct: 314 INVENNGMIMTRYSNGVTRAEGQ----LALASFRNTQGLAAVGGNNWVETFESGQPVLGT 369 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 D + ++ G LEDSN + E+ M+ + + + I ++ M + Sbjct: 370 ATDGNFGALRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVN 423 >gi|15022422|dbj|BAB62243.1| flagellar protein [Treponema medium] Length = 280 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S G++ + R+ + +N++N +T GF+ +V F +++ + + Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNIANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVG 60 Query: 56 -------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G+ STG D A++G+ +F L+S TR G F V Sbjct: 61 GVNPKEVGLGVMVASIDTVHTQGALQSTGINTDIAVQGNGFFVLKSGEKSFYTRAGAFGV 120 Query: 109 TDDGSLVSASGKYPVLD 125 DG++V+ + V Sbjct: 121 DKDGTMVNPANGMRVQG 137 >gi|149191154|ref|ZP_01869412.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] gi|148834992|gb|EDL51971.1| putative flagellar basal-body rod protein [Vibrio shilonii AK1] Length = 244 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 17/244 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M A+N+S+ DT+GF+ + S + + S Sbjct: 1 MNPILFSAAKGAERTMLAQHVRANNLSHADTIGFKALMEHSSPMRLEGSGFLTSVTSRTN 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSA 117 S + G I T LD ++ GD + LE G + TR G F++ +G L Sbjct: 61 SSIN--NFAQGEDIRTERPLDVSINGDGFITLEGLDGEPNELYTRAGNFRLDGNGQL--Y 116 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------KVIATMGLYSVDMSQGFVR 171 G+ V+ + I E V G IS + + L + + + Sbjct: 117 LGERRVMSIEGPMIL--PDFEFITVSANGLISVTPIGGEASVEVGALKLVKPEYDE--MT 172 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 SG L + V V+ G+LE SN +S+ E+ ++ LT+++ ++ + Sbjct: 173 MHASGHFVPKGGGVLAEDFTVQVRSGYLEASNVSSLEELVSIMSLTRQYEMQIEVMASAD 232 Query: 232 KSML 235 + Sbjct: 233 EIAQ 236 >gi|311070150|ref|YP_003975073.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] gi|310870667|gb|ADP34142.1| flagellar basal body rod protein FlgG [Bacillus atrophaeus 1942] Length = 274 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 102/275 (37%), Gaps = 36/275 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L+Q++ T++ N+SN+ T G++ FSE+V + +D+K VA Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSSTTGYKAKNTNFSELVRQQFDQVDEKNDNVA 60 Query: 61 SGKE---------------YLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 ++ L + GS T +LD A + + TRDG Sbjct: 61 KARKTPPGLRLGVGAAMNARLVSDQGSIEKTERDLDIAFTSPYQYLQVNVNGNRQYTRDG 120 Query: 105 RFKV------TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA-- 156 + + LV+ G YPVLD PI I + + E G ++ Sbjct: 121 ALYLTPAAGNDNQLQLVTGDG-YPVLDENGNPINIDDSMKQITISENGTLTASTGNAGDA 179 Query: 157 ----TMGLYSVDMSQGFVRRENSGISPNIPPTP------LEDLSGVTVKRGFLEDSNANS 206 +G+ V+ Q N+ S N + + +++G LE SN + Sbjct: 180 SQQFNLGVVQVNNPQELKSEGNNLFSLNGNAAAALEELNGANRQSIGIQQGALEMSNVDI 239 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +M +I + + + I ML + ++ Sbjct: 240 SKQMTDLISSQRSYQLNSRTI-TMGDQMLGLVNSV 273 >gi|228945375|ref|ZP_04107730.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814347|gb|EEM60613.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 257 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 92/258 (35%), Gaps = 21/258 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTAGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 S V +++ G+ T + DF L+ D +F LTRDG F Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSV 163 + D L + SG + V+ + I+IP+ + V G ++Q Sbjct: 120 LNSDRYLQTTSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGA 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + ++REN + VK LE+SN + EM ++ + ++ Sbjct: 178 EANNRLIQRENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISAS 237 Query: 224 TTLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 238 QRVMTSFDKIYEKEANEI 255 >gi|225849153|ref|YP_002729317.1| flagellar hook protein FlgE [Sulfurihydrogenibium azorense Az-Fu1] gi|225643172|gb|ACN98222.1| flagellar hook protein FlgE [Sulfurihydrogenibium azorense Az-Fu1] Length = 409 Score = 140 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 12/192 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISF 58 M SF ++ ++ + ++DN++N +T+GF++ +V F ++V + + Sbjct: 1 MLQSFYTAVSGLNGNQKWIDVISDNIANVNTIGFKSERVTFEDLVAKSLTTFANNTPKNM 60 Query: 59 VASGKEYL-----SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDG 112 G ++ GSF +T LD AL+G+ +F ++ +G TR G+F++ +G Sbjct: 61 EIGGGSFIALTTKDFSQGSFQNTVNPLDLALDGEGFFMVKDNQGTVYYTRAGQFRLDANG 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 +V+ G I + N+ S + + L V Sbjct: 121 DIVNVDGMKLQGWKLDTAGNISAALDKINIPY----SILPSITTKINLVEPTNLDSRVNT 176 Query: 173 ENSGISPNIPPT 184 + I P P T Sbjct: 177 ISGTIDPTNPAT 188 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDLSGV- 192 +V E G + GKV IA + + + + VR+ N+ PN TP+ G+ Sbjct: 299 VSVSEDGVVRGMYSNGKVELIARLAVATFKDKEMLVRKGNNLYLPNTQSFTPIITPGGIL 358 Query: 193 -TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V+ GFLE SN + E +I + + + +I +++ + EA+ Sbjct: 359 SKVRSGFLELSNVDISKEFINLITAQRAYQANARVITTDDQILQEAMN 406 >gi|27904201|gb|AAO27034.1| flagellar basal-body rod protein FlgF [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 262 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 118/251 (47%), Gaps = 17/251 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M++ N + + + + + +A+N++N T GF++ ++ ++ + K+ Q+ +F+ Sbjct: 15 MESIVNAIITSTNKIFENQARIANNITNISTPGFKSE-LELKILLPSQKDQNSQEDNFLY 73 Query: 61 SGKEYLSKEVGSFISTGTELDFAL-EGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSAS 118 K+Y +K G+ T LD A+ + + WF ++ P+ I T++G FK+ + L + Sbjct: 74 --KQYKNKNQGTLRRTNQPLDCAIIDKNDWFVIKIDPKTIAYTKNGHFKINSNRQLTVQN 131 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRE 173 +PVL I IP+ + I + G I+ +A L + D++ + Sbjct: 132 --HPVLGEDGE-IFIPKNENIV-ISSDGYINIIKNNVLQHKVAQFKLKNFDINDLTYKTN 187 Query: 174 NSGI---SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + + T +++S + + G LEDSN N M +MI +KF+ ++ Sbjct: 188 GLYLLNKNNKLNHTNHKNVSNIKLVSGILEDSNVNLEENMVEMISNARKFDMQIKILSMY 247 Query: 231 EKSMLEAIRNI 241 ++ A R + Sbjct: 248 NENTQAASRFL 258 >gi|325567513|ref|ZP_08144180.1| flagellar basal-body rod protein [Enterococcus casseliflavus ATCC 12755] gi|325158946|gb|EGC71092.1| flagellar basal-body rod protein [Enterococcus casseliflavus ATCC 12755] Length = 233 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT--------IKVKFSEVVGAIKNDI 52 M ++ L++R T + N++N +T G++ +V D Sbjct: 1 MIRGLDVLSRNISLLQKRQETTSCNIANVNTTGYQAKTLFQSALDEVALHNYQSGPNADT 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 + I ++ G + +S++ G+ TG DFAL + +F +++ G TR+G F Sbjct: 61 RRDIGGLSLGTQLAGSTISQDQGAVKQTGQASDFALLSEGYFVVQNNAGQRLYTRNGDFT 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 V V+ G Y VL +S G A + + + Sbjct: 121 VNQQNQYVTQEG-YLVLGANGQ-----------------AVSALGP--ANFQIQTFP-PE 159 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + ++ N T + + +++G LE +N EM MI +++F + + Sbjct: 160 ALTTAGQNYVTSNAAGTTV---NAPVIQQGALEQANVAVADEMVAMIQTSREFEANQKAL 216 Query: 228 DENEKSMLEAIRNIA 242 +++ +A+ + Sbjct: 217 SSTNQTLQKAVNELG 231 >gi|313901443|ref|ZP_07834901.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] gi|313468293|gb|EFR63749.1| fagellar hook-basal body protein [Thermaerobacter subterraneus DSM 13965] Length = 406 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 15/151 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +TVG+++ +V F E+ Sbjct: 1 MMRSLYAGISGLQNHQLRMDVIGNNIANVNTVGYKSSRVTFKELFNQTLRGASAPAGPAR 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRF 106 G + + G+ TG D A++GD +F L+ G TR G F Sbjct: 61 GGTNPIQIGLGTALGGIDVIHQAGNPQVTGVVTDMAIQGDGFFVLQDATGGYAYTRAGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 ++ +G LV+A G VL + +P +D Sbjct: 121 RLDAEGYLVNADG-LRVLGWQAQGGVLPARD 150 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 F+V G I+ + IA + L + G +R N N +G Sbjct: 293 TSFSVDASGTITGTFSNGMTQPIAQVALAAFANPAGLLRDGNLYWESNNSGVARIGEAGT 352 Query: 193 ----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V G LE SN + E MI + F + + +I +++ + E + Sbjct: 353 GGRGSVTPGALEMSNVDLSREFVDMIVTQRGFQANSRVITTSDEMLQELVN 403 >gi|291334315|gb|ADD93976.1| hypothetical protein Rsph17025_1668 [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 251 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 98/240 (40%), Gaps = 10/240 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV-KFSEVVGAIKNDIDQKISFV 59 M L+A ++ +A+N++N + GFR + + + + K+ + Sbjct: 1 MDRLAQTALSAIRQMQDNKFDLANNLANVNVPGFRKDLPNEGNAGFLKELDKVSAKVLPL 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 S + S E GS +TG E D A+ + +F ++ G + L+R G V LV+ Sbjct: 61 ESDRRLFSNESGSLQNTGLETDVAVLNEGFFYIQPENGQVALSRRGDLGVNAQNQLVNGV 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRR 172 G VL PI +P ++ + GE+ G++ + + S + + Sbjct: 121 GDL-VLSDGLEPILLP-NFTAMSITDIGEVLVQQPGLPDGELTSVGFIGSTTSQLEQLIK 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G I T + +G+LE SN N++ E+ + I + ++F LI + Sbjct: 179 SLDGNIRKIDGTVPDPDQTGKFGQGYLESSNVNAIEELIRNIDMQRQFEINVKLIKKASD 238 >gi|257866396|ref|ZP_05646049.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC30] gi|257873088|ref|ZP_05652741.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC10] gi|257800354|gb|EEV29382.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC30] gi|257807252|gb|EEV36074.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC10] Length = 233 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 94/255 (36%), Gaps = 37/255 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT--------IKVKFSEVVGAIKNDI 52 M ++ L++R T + N++N +T G++ +V G D Sbjct: 1 MIRGLDVLSRNISLLQKRQETTSGNIANVNTTGYQAKTLFQSALDEVALHNYQGGPNADT 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 + I ++ G + +S++ G+ TG DFAL + +F +++ G TR+G F Sbjct: 61 RRDIGGLSLGTQLAGSTISQDQGAVKQTGQASDFALLSEGYFVVQNNAGQRLYTRNGDFT 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 V V+ G Y VL + L + Sbjct: 121 VNQQNQYVTQEG-YLVLGANGQAVSALGPANF--------------------LIQTFPPE 159 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + ++ N T + + +++G LE +N EM MI +++F + + Sbjct: 160 ALTTAGQNYVTSNAAGTTV---NAPVIQQGALEQANVAVADEMVAMIQTSREFEANQKAL 216 Query: 228 DENEKSMLEAIRNIA 242 +++ +A+ + Sbjct: 217 SSTNQTLQKAVNELG 231 >gi|317121822|ref|YP_004101825.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] gi|315591802|gb|ADU51098.1| flagellar hook-basal body protein [Thermaerobacter marianensis DSM 12885] Length = 406 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 15/153 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +TVGF++ +V F E+ Sbjct: 1 MMRSLYAGISGLQNHQLRMDVIGNNIANVNTVGFKSSRVTFKELFNQTLRGAAAPAGPTR 60 Query: 61 SGKEYLS-------------KEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRF 106 G + + G+ TG D A++GD +F L+ G TR G F Sbjct: 61 GGTNPIQIGLGTALAGIDVIHQPGNPQVTGVATDLAIQGDGFFVLQDAAGGYAYTRAGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 ++ G LV+A G VL + +P +D + Sbjct: 121 RLDAAGYLVNADG-LRVLGWQAQGGVLPARDAV 152 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 F + G I+ + IA + L S G +R N N ++G Sbjct: 293 TSFAIDTSGTITGTFSNGTTQPIAQVALASFANPAGLLRDGNLYWESNNSGVARIGVAGT 352 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E MI + F + + +I +++ + E + Sbjct: 353 GGRGALTPGALEMSNVDLSREFVDMIVTQRGFQANSRVITTSDEMLQELVN 403 >gi|257876009|ref|ZP_05655662.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC20] gi|257810175|gb|EEV38995.1| flagellar hook-basal body complex protein [Enterococcus casseliflavus EC20] Length = 233 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 98/255 (38%), Gaps = 37/255 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT--------IKVKFSEVVGAIKNDI 52 M ++ L++R T + N++N +T G++ +V D Sbjct: 1 MIRGLDVLSRNISLLQKRQETTSGNIANVNTTGYQAKTLFQSALDEVALHNYQSGPNADT 60 Query: 53 DQKISFVASGKE----YLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFK 107 + I ++ G + +S++ G+ TG DFAL + +F +++ G TR+G F Sbjct: 61 RRDIGGLSLGTQLAGSTISQDQGAVKQTGQASDFALLSEGYFVVQNNAGQRLYTRNGDFT 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 V V+ G Y VL +S G A + + + Sbjct: 121 VNQQNQYVTQEG-YLVLGANGQ-----------------AVSALGS--ANFQIQTFP-PE 159 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + ++ N+ T + + +++G LE +N EM MI +++F + + Sbjct: 160 ALTTAGQNYVTSNVAGTTV---NAPVIQQGALEQANVAVADEMVAMIQTSREFEANQKAL 216 Query: 228 DENEKSMLEAIRNIA 242 +++ +A+ + Sbjct: 217 SSTNQTLQKAVNELG 231 >gi|330830303|ref|YP_004393255.1| flagellar hook protein FlgE [Aeromonas veronii B565] gi|328805439|gb|AEB50638.1| Flagellar hook protein FlgE [Aeromonas veronii B565] Length = 450 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 18/153 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +T+GF+ + +F++V N Q + VA+ Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTMGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 G G+ T LD A++G+ +F + TR G FK+ ++ +V+ Sbjct: 62 GAVAQQFHQGALQFTNNALDLAIQGNGFFVTSDGLTNLDRTYTRAGAFKLNENSYMVNNQ 121 Query: 119 GKY-------------PVLDMASVPIQIPQKDE 138 G Y V A+ PIQIP + Sbjct: 122 GHYLQGYEINTDGTPKAVSINATKPIQIPDRAG 154 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 13/115 (11%) Query: 138 EIFNVGEKGEISQKGKVIATMGLY-----SVDMSQGFVRRENSG------ISPNIPPTPL 186 + G +S T+ + SQG + ++ +P TP Sbjct: 337 TKVEITPDGIVSATYSNATTIKVAMVAMAKFANSQGLTQVGDTSWRQSLLSGDALPGTPN 396 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G T+K LE SN + E+ +I + F + + ++ N S+ + I I Sbjct: 397 SGTFG-TIKSSALEQSNVDLTSELVDLITAQRNFQANSRSLEVNS-SLQQTILQI 449 >gi|188997539|ref|YP_001931790.1| protein of unknown function DUF1078 domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932606|gb|ACD67236.1| protein of unknown function DUF1078 domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 413 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 18/174 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 M SF + +Q L+ ++DN++N +T+GF++ +V F ++V KN Sbjct: 1 MLQSFYTAITGLNGNQQWLNVISDNIANVNTIGFKSERVTFEDLVAHSLTTFANNTPKNT 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 SFVA + GSF++T + D AL+G+ +F ++ +G TR G+F++ Sbjct: 61 EIGGGSFVALTTK--DFSQGSFMNTNSPTDLALDGEGFFMVKDNQGTVYYTRAGQFRLDA 118 Query: 111 DGSLVSASG----KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 +G LV+ G + + + ++ + + + + + I+ K ++ L Sbjct: 119 NGDLVNVDGMKLQGWTLDNNGNIAGALDKINVPYAINP--TITTKINLVEPTNL 170 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDLSGV- 192 V E G + G V IA + + + + VR+ N+ PN TP+ G+ Sbjct: 303 VAVTEDGIVKGMYSNGNVKNIARLAVATFKDKEMLVRKGNNLYLPNTQTFTPIITPGGIL 362 Query: 193 -TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V+ GFLE SN + E +I + + + +I +++ + EA+ Sbjct: 363 SKVRSGFLELSNVDISREFINLITAQRAYQANARVITTDDQILQEAMN 410 >gi|32490791|ref|NP_871045.1| hypothetical protein WGLp042 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165997|dbj|BAC24188.1| flgF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 246 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 99/245 (40%), Gaps = 22/245 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF---SEVVGAIKNDIDQKIS 57 M + + A ++ R S A+N+SN T GF+ F S ++ D Sbjct: 1 MDKAIYTAMNAAISYADRHSINANNLSNISTSGFK-----FHIPSSKYITVRGDSFITRV 55 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 F + +K G+ +G LD A+ G+ W A++ G T++G K+ ++G L Sbjct: 56 FPTATTSTHNKNPGNVNYSGNNLDVAILGEGWLAIQLEDGSEGYTKNGHIKINEEGKLTI 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQG 168 + +PV+ + +++ + G IS G + + L D++ Sbjct: 116 KN--FPVIGSENGALEVTPG-SDLTISSDGTISAIGPGESSKSITSVGKLKLAKSDLND- 171 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + +GI + L+ + + E+SN +++ + ++I ++ F LI Sbjct: 172 -LELNENGIFISKNNKILQSDESIRLIPNAFEESNVSAVDSIIKIIDDSRNFEMQMKLIS 230 Query: 229 ENEKS 233 ++ Sbjct: 231 NISEN 235 >gi|228984857|ref|ZP_04145027.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774807|gb|EEM23203.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 257 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 21/258 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISF- 58 IG + QR++ ++N++N T GF+ + +V + I+ Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVINIG 60 Query: 59 -----VASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 V +++ G+ T + DF L+ D +F LTRDG F Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSV 163 + D L + SG + V+ + I+IP+ + V G ++Q Sbjct: 120 LNSDRYLQTTSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGA 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + V+REN + TVK LE+SN + EM ++ + ++ Sbjct: 178 EANNRLVQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQKMISAS 237 Query: 224 TTLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 238 QRVMTSFDKIYEKEANEI 255 >gi|229172418|ref|ZP_04299977.1| Flagellar basal-body rod protein flgG [Bacillus cereus MM3] gi|228610889|gb|EEK68152.1| Flagellar basal-body rod protein flgG [Bacillus cereus MM3] Length = 257 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 93/258 (36%), Gaps = 21/258 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 S V +++ G+ T + DF L+ D +F LTRDG F Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSV 163 + D L + SG + V+ + I+IP+ + V G ++Q Sbjct: 120 LNSDRYLQTTSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGA 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + V+REN + TVK LE+SN + EM ++ + ++ Sbjct: 178 EANNRLVQRENKSFTLAEGNIADLPNGVGTVKNHMLENSNVDMTKEMADLMTDQKMISAS 237 Query: 224 TTLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 238 QRVMTSFDKIYEKEANEI 255 >gi|326319097|ref|YP_004236769.1| fagellar hook-basal body protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375933|gb|ADX48202.1| fagellar hook-basal body protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 425 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 SF GL+ A + L + N++N+ TVGF+ + +F+E+V + + Sbjct: 2 SFQQGLSGLNAASKNLDVIGHNVANSGTVGFKASRAEFAEMVANAIGSAGGTNAGIGVEL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 G+ TG LD A+ GD +F L+ P G TR G FK+ +G LV+ + K Sbjct: 62 SAVAQQFNQGNISVTGNSLDVAINGDGFFTLQQPDGSRAYTRAGNFKLDSNGQLVTNT-K 120 Query: 121 YPVLDMASVPIQ 132 V+ A PI Sbjct: 121 AQVMGYALDPIT 132 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPT 184 I I + G +G+V L S +QG ++ + T Sbjct: 314 ISIENNGTVMTRYSNGVTRAEGQV----ALASFRNTQGLASVGSNNWVETFESGQPVLGT 369 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P E G ++ G LEDSN + E+ M+ + + + I ++ M + Sbjct: 370 PTEGKFG-GLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVN 423 >gi|260768781|ref|ZP_05877715.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] gi|260616811|gb|EEX41996.1| flagellar basal-body rod protein FlgF [Vibrio furnissii CIP 102972] Length = 229 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 13/221 (5%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 A+N+++ +TVGF+ ++ S+ + + ++ + + G+ + TG Sbjct: 4 QEVRANNLAHANTVGFK-SLMEHSDAMAVAGSGFQSSVT-TRTNSASTNFTPGAEVRTGR 61 Query: 79 ELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 +LD + G +F++ G + +R G F+++ DG G VL PI++P+ Sbjct: 62 DLDVQIPGRGFFSVAGQAGEPEELYSRAGNFRLSSDGL--LLLGDRQVLGEDG-PIEVPE 118 Query: 136 KDEIFNVGEKGEIS---QKGKVIATMGLYSVDMSQ-GFVRRENSGISPNIPPTPLEDLSG 191 + N+ G IS G +GL + + + SG+ L Sbjct: 119 F-QAINIASDGAISITPPGGGAEMQIGLLKLVNPEYAEMTLHTSGLFVPKQGETLAFDPE 177 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 V V+ G+LE SN +S+ E+ M+ LT+++ + + Sbjct: 178 VAVRSGYLEGSNVSSLDELVSMMALTRQYEMQVKAMASASE 218 >gi|4580018|gb|AAD24206.1|AF049342_4 flagellar hook protein FlgE [Treponema denticola ATCC 33520] Length = 237 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G+ + R+ + +N++N +T GF+ +V F +++ + + Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G+ +TG D A++G+ +F L+ TR G F + Sbjct: 61 GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G+LV+ + V Sbjct: 121 DKEGTLVNPANGMRVQG 137 >gi|332298237|ref|YP_004440159.1| flagellar hook-basal body protein [Treponema brennaborense DSM 12168] gi|332181340|gb|AEE17028.1| flagellar hook-basal body protein [Treponema brennaborense DSM 12168] Length = 463 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + RL + +N++N +T GF+ +V F +++ + + + Sbjct: 1 MMRSLYSGVSGMQNHQTRLDVIGNNVANVNTTGFKRGRVNFQDMISQQLSGAAKPTTEVG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G+ STG D A++G+ +F L++ TR G F + Sbjct: 61 GVNPKEVGLGVMVASIDTVFTQGNLQSTGVATDVAIQGNGFFVLKNGEETFYTRAGAFGL 120 Query: 109 TDDGSLVSASGKYPVLD 125 DG+LV+ + V Sbjct: 121 DSDGTLVNPANGLRVQG 137 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 + F + G I+ +V+ + L + G + ++ + N SG Sbjct: 349 DNFKIDSSGIITGVYSNGTNRVLGQIALATFSNQGGLEKAGDNTYVQSNNSGLANIGTSG 408 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ G LE SN + + MI + F + + I + + + Sbjct: 409 IAGKGSMLAGSLEMSNVDLTEQFTDMIVTQRGFQASSKTIQTADTLLDTVMN 460 >gi|121596117|ref|YP_988013.1| hypothetical protein Ajs_3830 [Acidovorax sp. JS42] gi|120608197|gb|ABM43937.1| protein of unknown function DUF1078 domain protein [Acidovorax sp. JS42] Length = 538 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A + L + N++N++T GF+ + +F+ ++ + S + Sbjct: 2 GFQQGLSGLNASAKNLDVIGHNIANSNTTGFKASRTEFAAMIASAIGAASGTNSGIGVEV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 ++++ G+ TG LD A+ G+ +F L+ P G TR G FK+ + G++V+ G Sbjct: 62 SAIAQQFNQGNLTVTGNSLDVAINGNGFFTLQMPDGSRAYTRAGNFKLDNVGNVVTNDGA 121 Query: 121 YPVLDMASVPIQ 132 V+ P+ Sbjct: 122 -QVMGYPIDPVT 132 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPL--- 186 I + I G +G+V L S +QG + + P+ Sbjct: 427 INVENNGMIMTRYSNGVTRAEGQV----ALASFRNTQGLAAVGGNNWVETYESGQPVMGA 482 Query: 187 -EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 D + ++ G LEDSN + E+ M+ + + + I ++ M + Sbjct: 483 PTDGNFGALRAGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVN 536 >gi|229542505|ref|ZP_04431565.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] gi|229326925|gb|EEN92600.1| protein of unknown function DUF1078 domain protein [Bacillus coagulans 36D1] Length = 276 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 108/278 (38%), Gaps = 37/278 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S L+ ++ T++ N++N DT G+++ + F++++ N+ Sbjct: 1 MNQSMLTATNTLRQLQDKIDTISHNVANVDTNGYKSKQASFTDLLVQQINNQPDTSKETG 60 Query: 54 -------QKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFAL----ESPRGIILT 101 + + + +S G+ TG LD A + + + + + T Sbjct: 61 RKTPYGIRTGTGAKLAQAVISPSQGALEHTGRALDMAFTKENQYLKVLARANGSDEVAFT 120 Query: 102 RDGRFKVTDDGS----LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI----SQKGK 153 R+G +V+ G+ L A+G PVLD + I + + G + S + Sbjct: 121 RNGALEVSPLGNNRSVLTDANGN-PVLDEHNAMITFRGNVADYAIRPNGTLQVAYSDGTR 179 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTPL---EDLSGVT-----VKRGFLEDSNAN 205 +G+ + Q + N+ + DL+G T +++G LE SN + Sbjct: 180 ESFNLGVVQMRNPQVLEQVGNNLLRLPQNVNAANVYTDLTGATRSQISMQQGVLEKSNVD 239 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 E+ ++ + + + I +++ M + NI S Sbjct: 240 LSTEITELTKTERLYQFQSKTITLSDQMMG-LVNNIRS 276 >gi|120613059|ref|YP_972737.1| hypothetical protein Aave_4423 [Acidovorax citrulli AAC00-1] gi|120591523|gb|ABM34963.1| protein of unknown function DUF1078 domain protein [Acidovorax citrulli AAC00-1] Length = 425 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 SF GL+ A + L + N++N+ TVGF+ + +F+E+V + + Sbjct: 2 SFQQGLSGLNAASKNLDVIGHNVANSGTVGFKASRAEFAEMVANAIGSAGGTNAGIGVEL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 G+ TG LD A+ GD +F L+ P G TR G FK+ +G LV+ + K Sbjct: 62 SAVAQQFNQGNISVTGNSLDVAINGDGFFTLQQPDGSHAYTRAGNFKLDSNGQLVTNT-K 120 Query: 121 YPVLDMASVPIQ 132 V+ A PI Sbjct: 121 AQVMGYALDPIT 132 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPT 184 I I + G +G+V L S +QG N+ + T Sbjct: 314 ISIENNGTVMTRYSNGVTRAEGQV----ALASFRNTQGLASVGNNNWVETFQSGQPVLGT 369 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P E G ++ G LEDSN + E+ M+ + + + I ++ M + Sbjct: 370 PTEGKFG-GLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVN 423 >gi|145298491|ref|YP_001141332.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] gi|142851263|gb|ABO89584.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] Length = 446 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 18/159 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +T+GF+ + +F++V N Q + VA+ Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTMGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 G G+ T LD A++G+ +F + TR G FK+ ++ +V+ Sbjct: 62 GAVAHQFHQGALQFTNNALDLAIQGNGFFVTSDGLTNLDRTYTRAGAFKLNENSYMVNNQ 121 Query: 119 GKY-------------PVLDMASVPIQIPQKDEIFNVGE 144 G Y V A+ PIQ+P + + E Sbjct: 122 GHYLQGYEINTDGTPKAVSINATKPIQVPDRAGEPKMTE 160 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 13/118 (11%) Query: 135 QKDEIFNVGEKGEISQKGKV-----IATMGLYSVDMSQGFVRRENSG------ISPNIPP 183 + G +S +A + L SQG + ++ +P Sbjct: 330 GNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGDTSWRQSLLSGDALPG 389 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 TP G ++K +E SN + ++ +I + F + + ++ N S+ + I I Sbjct: 390 TPNSGTLG-SIKSSAVEQSNVDLTSQLVNLITAQRNFQANSRSLEVNS-SLQQTILQI 445 >gi|300117306|ref|ZP_07055096.1| flagellar basal body rod protein FlgG [Bacillus cereus SJ1] gi|298725141|gb|EFI65793.1| flagellar basal body rod protein FlgG [Bacillus cereus SJ1] Length = 257 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 21/258 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKI 56 IG + QR++ ++N++N T GF+ + + + Sbjct: 1 MNGLYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIG 60 Query: 57 SF---VASGKEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFK 107 S V +++ G+ T + DF L+ D +F LTRDG F Sbjct: 61 SVDYAVVPAATHVNLVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFT 119 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSV 163 + D L + SG + V+ + I+IP+ + V G ++Q Sbjct: 120 LNSDRYLQTTSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGA 177 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + + ++REN + TVK LE+SN + EM ++ + ++ Sbjct: 178 EANNRLMQRENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQKMISAS 237 Query: 224 TTLIDENEKSMLEAIRNI 241 ++ +K + I Sbjct: 238 QRVMTSFDKIYEKEANEI 255 >gi|295399817|ref|ZP_06809798.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978220|gb|EFG53817.1| fagellar hook-basal body protein [Geobacillus thermoglucosidasius C56-YS93] Length = 334 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 73/223 (32%), Gaps = 32/223 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G+ A + +L + +N++N +T GF+ + F +++ + Sbjct: 1 MLRSMYSGINAMKNFQVKLDVIGNNIANVNTYGFKKGRTIFQDLISQTISGASAPSQGRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPR------GIILTR 102 V G + GS TG LD A+ GD +F + + TR Sbjct: 61 GTNPRQVGLGSQLAAIDTIHTTGSTQPTGRVLDLAISGDGFFQVAESADNTNFTNVRYTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G F + DG LV++ G Y V A G G + Sbjct: 121 AGNFYLDKDGYLVTSDGYYVVGFAAYA---------TGTYDPDG---AAGATPPVNNVTL 168 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 + + + +P ++ TV G E +N Sbjct: 169 SPLPSAIDPKFDFSSNPPKYTGVAPTINNFTVNTG--ETTNVQ 209 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 130 PIQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSVDMSQGFVRRENSGIS-PNIPP 183 PI+IP + ++G+ G I+ + + L + G + + Sbjct: 212 PIKIPTDAQSVSIGQDGSITYVDRFGTLRWAGQLVLAKFPNNGGLEKAGANLYRDTPNSG 271 Query: 184 TPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TP+ + +G ++ G LE SN + E +MI + F + T +I +++ + E + Sbjct: 272 TPILNFAGAAGIGAIQSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEILQELVN 331 >gi|299822258|ref|ZP_07054144.1| flagellar basal body rod protein FlgG [Listeria grayi DSM 20601] gi|299815787|gb|EFI83025.1| flagellar basal body rod protein FlgG [Listeria grayi DSM 20601] Length = 259 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 22/249 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 IG A + + L ++N++N++T GF+ ++ S+ + + +Q S Sbjct: 1 MKGLYIGAAGMMNYMKHLDVHSNNIANSETAGFKFDQLT-SQAMSRKQVQFNQADSAKTI 59 Query: 62 G---------KEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 G + +++ + GS TG +LDF L G ++F LTR G F Sbjct: 60 GSVDYAVHPNQTFVNLKQGSMQVTGRDLDFFLHDADSEAGSSFFVAGKDGETFLTRGGSF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKVIATMGLYSVD 164 +G L ++ G +L IQ+ V G I + +++ + + Sbjct: 120 YSDQNGFLKTSDGA-NLLAENGTAIQV-GAQTKITVDTAGNIRRADTNELLGKLQTKFIA 177 Query: 165 MSQ-GFVRRENSGISPNIPPTPLEDLSGVTVKR-GFLEDSNANSMYEMGQMIHLTQKFNS 222 Q G + + G T +G + + G LE SN + EM +++ + + Sbjct: 178 ADQRGNLEKNGLGQLTLKTGTIQGLPAGRALIQNGVLESSNVDMSTEMVELMDNQRMVQA 237 Query: 223 ITTLIDENE 231 + +I + Sbjct: 238 SSNIIKMFD 246 >gi|120598232|ref|YP_962806.1| flagellar hook protein FlgE [Shewanella sp. W3-18-1] gi|120558325|gb|ABM24252.1| flagellar basal body FlaE domain protein [Shewanella sp. W3-18-1] Length = 453 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +TVGF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTVGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV +V +S Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTSSELGTLDFSYTRAGAFKVDASNYMVDSS 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEI 139 G Y PV + P+QIP Sbjct: 122 GNYLQTFPVDKEGNSTSVSLTTAKPVQIPDTAGS 155 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 +G G I+ G + A + L QG + N+ ++ P Sbjct: 340 TNVEIGADGLITASYSNGSTVPLARVALVRFANEQGLTQVGNTSWKASLNSGPALAGEAN 399 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|127512279|ref|YP_001093476.1| flagellar hook protein FlgE [Shewanella loihica PV-4] gi|126637574|gb|ABO23217.1| flagellar basal body FlaE domain protein [Shewanella loihica PV-4] Length = 453 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 19/183 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T GF+ + +F++V + N V + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVTT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 + + GS T LD A+ G +F S G TR G FKV D LV+++ Sbjct: 62 AQVAQQFQQGSLQFTSNALDMAINGGGFFVTSSEVGSQDLSYTRAGAFKVDADSYLVNSA 121 Query: 119 GKY----PVLDMAS---------VPIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVD 164 G Y PV + P++IP + I T+ + + Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTTQPVKIPDTAGSPQKTDNIGIQMNLNAGEGTLDPANFN 181 Query: 165 MSQ 167 + Sbjct: 182 PND 184 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 VG G I G + A + L QG + N+ ++ P Sbjct: 340 TNVEVGADGLINASYSNGSTVPLARVALARFSNEQGLTQVGNTSWKESLDSGPALAGEAN 399 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|222112272|ref|YP_002554536.1| flagellar basal body flae domain-containing protein [Acidovorax ebreus TPSY] gi|221731716|gb|ACM34536.1| flagellar basal body FlaE domain protein [Acidovorax ebreus TPSY] Length = 531 Score = 137 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A + L + N++N++T GF+ + +F+ ++ + S + Sbjct: 2 GFQQGLSGLNASAKNLDVIGHNIANSNTTGFKASRTEFAAMIASAIGAASGTNSGIGVEV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 ++++ G+ TG LD A+ G+ +F L+ P G TR G FK+ + G++V+ G Sbjct: 62 SAIAQQFNQGNLTVTGNSLDVAINGNGFFTLQMPDGSRAYTRAGNFKLDNVGNVVTNDGA 121 Query: 121 YPVLDMASVPIQ 132 V+ P+ Sbjct: 122 -QVMGYPIDPVT 132 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPL--- 186 I + I G +G+ + L S +QG + + P+ Sbjct: 420 INVENNGMIMTRYSNGVTRAEGQ----IALASFRNTQGLAAVGGNNWVETYESGQPVLGA 475 Query: 187 -EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 D + ++ G LEDSN + E+ M+ + + + I ++ M + Sbjct: 476 PTDGNFGALRAGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTLVN 529 >gi|237755390|ref|ZP_04584017.1| flagellar basal body and hook protein FlgE [Sulfurihydrogenibium yellowstonense SS-5] gi|237692431|gb|EEP61412.1| flagellar basal body and hook protein FlgE [Sulfurihydrogenibium yellowstonense SS-5] Length = 413 Score = 137 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 18/174 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---------AIKND 51 M SF + +Q L+ ++DN++N +T+GF++ +V F +++ KN Sbjct: 1 MLQSFYTAITGLNGNQQWLNVISDNIANVNTIGFKSERVTFEDLIAHSLTTFANNTPKNT 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTD 110 SF+A + GSF++T + D AL+G+ +F ++ +G TR G+F++ Sbjct: 61 EIGGGSFIALTTK--DFSQGSFMNTNSPTDLALDGEGFFMVKDNQGTVYYTRAGQFRLNA 118 Query: 111 DGSLVSASG----KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 DG LV+ G + + D ++ + + + + + I+ K ++ L Sbjct: 119 DGDLVNVDGMKLQGWTLDDKGNIIGALDKINVPYAINP--TITTKISLVEPTNL 170 Score = 81.2 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDLSGV- 192 V E G I G V IA + + + + VR+ N+ PN TP+ G+ Sbjct: 303 VAVAEDGIIKGMYSNGNVKNIARLAVATFKDKEMLVRKGNNLYLPNTQTFTPIITPGGIL 362 Query: 193 -TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V+ GFLE SN + E +I + + + +I +++ + EA+ Sbjct: 363 SKVRSGFLELSNVDISREFINLITAQRAYQANARVITTDDQILQEAMN 410 >gi|84514832|ref|ZP_01002195.1| flagellar proximal rod protein FlgF [Loktanella vestfoldensis SKA53] gi|84510991|gb|EAQ07445.1| flagellar proximal rod protein FlgF [Loktanella vestfoldensis SKA53] Length = 253 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 96/242 (39%), Gaps = 12/242 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFV 59 M + +I L + L A NM+N + GFR E + ++ Sbjct: 1 MDRNIHIALNNLRNISSELRVNAQNMANANVPGFRADLSVTREASFLTPFDQFRSRVYSQ 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSA 117 + + S + G +T E+D A++G +F + G L+R G D +V Sbjct: 61 EASQSLFSTDEGGLQNTEAEMDLAIQGQGYFYIAPSSGGDTALSRRGDLSFDLDRFVVDG 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQGFVR 171 +G +LD+A PIQ+P I V E G+I +G +A + + + Sbjct: 121 AGN-KLLDVALNPIQLPPTRRIV-VEETGQIQMELLDAPEGTFVAGPIIATSQADDVVLS 178 Query: 172 RENSG-ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + G I P E + +GFLE+SN +++ + Q I ++F I Sbjct: 179 KSPDGHIRPVGQADLPEPDQRARLTQGFLENSNVDTIGSLIQNIESQRQFEMSVKFIALA 238 Query: 231 EK 232 ++ Sbjct: 239 QE 240 >gi|23100411|ref|NP_693878.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831] gi|22778644|dbj|BAC14912.1| flagellar hook-basal body protein [Oceanobacillus iheyensis HTE831] Length = 276 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 100/279 (35%), Gaps = 39/279 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M L+ +L + +NM+N+ T G+++ + +FS ++ N++ Sbjct: 1 MSQMMIQAAVTMNQLQNKLDLIGNNMANSQTTGYKSRQAEFSSLLTQQVNNLTDPANAQG 60 Query: 56 ---------ISFVASGKEYLSKEVGSFISTGTELDFALEGDA-WFALESPR----GIILT 101 S G ++ G+ T +LD AL + F +E G T Sbjct: 61 RLTPDGIRVGSGSRLGSTNMNLNQGAIQETNRDLDVALTSENLLFQVEVTENGQVGTRYT 120 Query: 102 RDGRFKVTD--DGS--LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE--ISQKGKVI 155 RDG F ++ +G L ++ G PV+ PI I + + E G+ + + G+ Sbjct: 121 RDGSFYLSPMENGQMMLSTSDGN-PVIGNNG-PILIQDGFDSIEINEYGQLLVERNGQQA 178 Query: 156 --ATMGLYSVDMSQGFVRRENSGIS-PNIPP--------TPLEDLSGVTVKRGFLEDSNA 204 + + + + PN+ + ++ LE SN Sbjct: 179 IEDQLSVVEAIRPRLLESTGQNLFQLPNLEALGFNAEEIIQETNPQTAILQSKALEQSNV 238 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + EM ++ + + + I ++ M + I S Sbjct: 239 DISKEMSDLLMTQRLYQFNSRTITMGDQMMG-LVNQIRS 276 >gi|319764539|ref|YP_004128476.1| flagellar hook-basal body protein [Alicycliphilus denitrificans BC] gi|330826755|ref|YP_004390058.1| flagellar hook-basal body protein [Alicycliphilus denitrificans K601] gi|317119100|gb|ADV01589.1| flagellar hook-basal body protein [Alicycliphilus denitrificans BC] gi|329312127|gb|AEB86542.1| flagellar hook-basal body protein [Alicycliphilus denitrificans K601] Length = 426 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 8/193 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISFVAS 61 F GL+ A + L + N++N++TVGF+ + +F+ +V V Sbjct: 2 GFQQGLSGLNASSKNLDVIGHNIANSNTVGFKASRTEFASMVATAIGTASTGNAGIGVQV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 G G+ TG LD A+ G+ +F ++ P G TR G FK+ D G++++ +G Sbjct: 62 GAVAQQFTQGNITVTGNNLDVAINGNGFFKIQQPDGSFAYTRAGNFKLDDKGNVITNNGG 121 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 V+ PI + + + G I S+ + R Sbjct: 122 -KVMGYPMDPITQTRTAST----PQPLVFPTGAPIPAKQTTSIKATFNLDARAPDAAGNP 176 Query: 181 IPPTPLEDLSGVT 193 P+ T Sbjct: 177 SATPPIAATPRST 189 Score = 75.8 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLY 161 +V DG V+ G + + + N+G+ G I + + L Sbjct: 284 QVNLDG--VTQFGAKFAVSDLTQDGYTAGQLTGINIGDDGTIMTSYSNGVTRAEGQIALA 341 Query: 162 SVDMSQGFVRRENSG-ISPNIPPTP----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 S +QG N+ + P + + ++ G LEDSN + E+ M+ Sbjct: 342 SFRNAQGLADIGNNLWVETFESGQPVMGVATEGAFGALRSGALEDSNVDLTAELVNMMTA 401 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + + + I ++ M + Sbjct: 402 QRAYQANAQTIKTQDQVMSTLVN 424 >gi|146293690|ref|YP_001184114.1| flagellar hook protein FlgE [Shewanella putrefaciens CN-32] gi|145565380|gb|ABP76315.1| flagellar basal body FlaE domain protein [Shewanella putrefaciens CN-32] gi|319427089|gb|ADV55163.1| flagellar hook-basal body protein [Shewanella putrefaciens 200] Length = 453 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV +V +S Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTSSELGTLDFSYTRAGAFKVDASNYMVDSS 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEI 139 G Y PV + P+QIP Sbjct: 122 GNYLQTFPVDKEGNSTSVSLTTAKPVQIPDTAGS 155 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 +G G I+ G + A + L QG + N+ ++ P Sbjct: 340 TNVEIGADGLITASYSNGSTVPLARVALVRFANEQGLTQVGNTSWKASLNSGPALAGEAN 399 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|23092315|gb|AAN08640.1| FlgE [Aeromonas hydrophila] Length = 453 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 18/156 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +++GF+ + +F++V N Q + VA+ Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNSIGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 G G+ T LD A++G+ +F + TR G FK+ ++ +V+ Sbjct: 62 GAVAQQFHQGALQFTNNSLDLAIQGNGFFVTSDGLTNLDRTYTRAGAFKLDENSYMVNNQ 121 Query: 119 GKY-------------PVLDMASVPIQIPQKDEIFN 141 G Y V A+ PIQIP K + Sbjct: 122 GHYLQGYEVNVDGTPKAVSINATKPIQIPDKAGVPT 157 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 13/115 (11%) Query: 138 EIFNVGEKGEISQKGKVIATMGLY-----SVDMSQGFVRRENSG------ISPNIPPTPL 186 + G +S T+ + SQG + ++ +P TP Sbjct: 340 TKVEITADGIVSATYSNATTLKVAMVAMAKFANSQGLTQVGDTSWRQSLLSGDALPGTPN 399 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G ++K LE SN + ++ +I + F + + ++ N S+ + I I Sbjct: 400 SGTFG-SIKSSSLEQSNVDLTSQLVNLITAQRNFQANSRSLEVNS-SLQQTILQI 452 >gi|206889889|ref|YP_002248123.1| flagellar hook protein FlgE [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741827|gb|ACI20884.1| flagellar hook protein FlgE [Thermodesulfovibrio yellowstonii DSM 11347] Length = 434 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID--QKISF 58 M TS G++ A LS + DN++N +TVGF+ + F++++ Q Sbjct: 1 MLTSLFTGISGLNANGLALSVIGDNIANANTVGFKASRANFADILSQTLGGASAMQVGRG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 G+ +T LD A+EGD +F ++ P G TR G+F+V DG +V Sbjct: 61 TMIIDIQKLFTQGTLETTSNPLDLAIEGDGFFVVQQPNGPTYYTRAGQFRVNKDGYIVDP 120 Query: 118 SGKY 121 +G Sbjct: 121 NGYL 124 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 V + G IS G+V +A + L + + N+ + P G Sbjct: 322 VTVDQDGVISGVFTNGQVKKVAQVVLAKFVAAHNLTKVGNNLYLESYASGGPTYGAPGTV 381 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V LE SN + E +MI + + + +I + + E + Sbjct: 382 GVGKVYANSLEASNVDLAEEFIRMIAAQRAYQANVRVITTTDNMLNELMN 431 >gi|254460576|ref|ZP_05073992.1| flagellar basal body FlaE domain protein [Rhodobacterales bacterium HTCC2083] gi|206677165|gb|EDZ41652.1| flagellar basal body FlaE domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 267 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 97/267 (36%), Gaps = 33/267 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---DQKISFVAS 61 F L+ +S V++N++N T FR F+++ + + Sbjct: 2 FGTILSGMSTSMFEISVVSNNVANAGTTAFRKSNASFADLYNGTSPETVSRTATGTGSIV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGI-----ILTRDGRFKVTDDGSL 114 + S + G + L+ AL G+ F +P G TRDG F + ++G L Sbjct: 62 EQTRQSAKQGGMMERDGVLNMALAGNGMFVTTTPNSDGTPSEVLSFTRDGEFSLDENGVL 121 Query: 115 VSAS-----GKYPVLDMASVPIQIPQKDEI------FNVGEKGEI-----SQKGKVIATM 158 S+ G + + +P ++E VG GE+ S+ +++ + Sbjct: 122 RSSKNDIVYGYDGLGGRGMQQLVVPFQNEDGAKLTALEVGSDGEMLATYGSEDPRLVGQI 181 Query: 159 GLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + + + + + + G +++ G LE SN + EM Sbjct: 182 AIALFPNTTAMRQMGMNRFKESRESGELVLGVAGSEGFG-SIQTGALESSNVDLTTEMTS 240 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 MI Q+F+ + ++ + + R Sbjct: 241 MIRAQQQFSGSSRILQTYTDMIEKLTR 267 >gi|84514825|ref|ZP_01002188.1| flagellar basal-body rod protein FlgG [Loktanella vestfoldensis SKA53] gi|84510984|gb|EAQ07438.1| flagellar basal-body rod protein FlgG [Loktanella vestfoldensis SKA53] Length = 273 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 99/269 (36%), Gaps = 41/269 (15%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND----IDQKISFVASGKEY 65 + ++ V++N++N+ T FR FS++ D + + + + G + Sbjct: 7 SGMATSMFEIAVVSNNVANSGTTAFRKSNTSFSDLYSGGSADSVARLSKGVGSIVDGTKQ 66 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGII-------LTRDGRFKVTDDGSLVSAS 118 S E G ++ L+ AL G F +P TRDG F + DG L +++ Sbjct: 67 -STEQGGLLTRDGVLNLALIGKGMFVSAAPSATAGAIGTISYTRDGEFSLDKDGQLRTST 125 Query: 119 GKYP------VLDMASVPIQ---IP--------QKDEIFNVGEKGEI-----SQKGKVIA 156 + V + P+ +P + +G G++ S +++ Sbjct: 126 NDFVMGYGPGVTPAEATPLVNLKVPVKKDGDGGAQLTALEIGTDGKLMATYGSAPAELLG 185 Query: 157 TMGLYSVDMSQGFVRRE------NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 T+ + S + G +D G+ ++ G LE SN + E+ Sbjct: 186 TIAIASFPNEIALRQIGMNRFLATDGAGTPKIGVGGQDGFGM-IQSGTLETSNVDLTIEL 244 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 MI Q+F+ + ++ + + R Sbjct: 245 TDMIRAQQQFSGSSRILQTYSDMIEKLTR 273 >gi|117620743|ref|YP_857343.1| flagellar hook protein FlgE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562150|gb|ABK39098.1| flagellar hook protein FlgE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 444 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 18/159 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +T GF+ + +F++V N Q + VA+ Sbjct: 2 SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 G G+ T LD +++G+ +F + TR G FK+ ++ +V+ Sbjct: 62 GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSDGLTNLDRTFTRAGAFKLNENSYMVNNQ 121 Query: 119 GKY-------------PVLDMASVPIQIPQKDEIFNVGE 144 G Y V A+ PIQIP + + E Sbjct: 122 GNYLQGYEINTDGTPKAVSINATKPIQIPDRAGEPKMTE 160 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 13/118 (11%) Query: 135 QKDEIFNVGEKGEISQKGKV-----IATMGLYSVDMSQGFVRRENSG------ISPNIPP 183 + G +S +A + L SQG + ++ +P Sbjct: 328 GNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGDTSWRQSLLSGDALPG 387 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 TP G ++K LE SN + ++ +I + F + + ++ N S+ + I I Sbjct: 388 TPNSGTLG-SIKSSALEQSNVDLTSQLVNLITAQRNFQANSRSLEVNS-SLQQTILQI 443 >gi|68164545|gb|AAY87274.1| predicted flagellar proximal rod protein [uncultured bacterium BAC17H8] Length = 251 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 14/242 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISF 58 M + S A N++N G+R + + + Sbjct: 1 MDKLIYTAFNTVNNIYDNRSVRAQNLANIAVPGYRRDLGAKSVGTAFLENFDTLQSRAMA 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 V Y S ++G+ TG + D A+ GD +F ++ L+R G +V +G L + + Sbjct: 61 VQDDTNYFSTQLGTLSETGADTDIAIRGDGYFIVQGLGEPSLSRRGDLRVNAEGILENGT 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKG--KVIATMGLYSVDMSQGFV 170 +LD A PIQ+P + V E G+I S G +++A + + + + + Sbjct: 121 -SQKMLDAALQPIQVPAH-RVIKVSEDGDIIIEPLGSDPGTEQLVARLAMTLAEGRE--L 176 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + G T + + V LE SN N E+ I + + +I Sbjct: 177 NKFADGEIRLEDGTVPPVSADMRVVAKHLELSNVNVTEELINSIEDQRAYEINVKMIASA 236 Query: 231 EK 232 + Sbjct: 237 SE 238 >gi|311992301|gb|ADQ26724.1| flagellar hook protein [Aeromonas hydrophila] Length = 443 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 18/159 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFN L+ A ++ L+ A+N++N +T GF+ + +F++V N Q + VA+ Sbjct: 1 SFNNALSGVNAAQKDLNVTANNIANVNTTGFKESRAEFADVYANSIFVNAKTQVGNGVAT 60 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 G G+ T LD +++G+ +F + TR G FK+ ++ +V+ Sbjct: 61 GAVAQQFHQGALQFTNNALDLSIQGNGFFVTSDGLTNLDRTFTRAGAFKLNENSYMVNNQ 120 Query: 119 GKY-------------PVLDMASVPIQIPQKDEIFNVGE 144 G Y V A+ PIQIP + + E Sbjct: 121 GNYLQGYEINTDGTPKAVSINATKPIQIPDRAGEPKMTE 159 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 13/118 (11%) Query: 135 QKDEIFNVGEKGEISQKGKV-----IATMGLYSVDMSQGFVRRENSG------ISPNIPP 183 + G +S +A + L SQG + ++ +P Sbjct: 327 GNLTKVEITPDGIVSATYSNATTLKVAMVALAKFANSQGLTQVGDTSWRQSLLSGDALPG 386 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 TP G ++K LE SN + ++ +I + F + + ++ N S+ + I I Sbjct: 387 TPNSGTLG-SIKSSALEQSNVDLTSQLVNLITAQRNFQANSRSLEVNS-SLQQTILQI 442 >gi|221636048|ref|YP_002523924.1| flagellar hook protein FlgE [Thermomicrobium roseum DSM 5159] gi|221157294|gb|ACM06412.1| flagellar hook protein FlgE [Thermomicrobium roseum DSM 5159] Length = 423 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 25/181 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S ++ A + + + +N++N +T GF+ +V+F++++ + Sbjct: 1 MMRSMFSAISGLRAHQTWMDVIGNNIANVNTTGFKVGRVRFTDILSQLVRGASGPTETRG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 G G+ TG D A++GD +F + + TRDG F + Sbjct: 61 GINPLQIGLGAVVGAVDTIHTQGALQLTGKPSDLAIQGDGFFVVSDGSQTLYTRDGAFDI 120 Query: 109 TDDGSLVSASGKYPVLD------------MASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 D LV+ S + VL PI IP ++ V +I+ +G + A Sbjct: 121 GSDLRLVNPSNGFYVLGWQADANGNVDTAGPVGPITIPIGQQLDAV-PTTQITVQGNLNA 179 Query: 157 T 157 Sbjct: 180 N 180 Score = 88.6 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGE---ISQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPT-----PLE 187 F V + G+ I G KV+ + L G ++ + P + P + Sbjct: 309 TTFTVSQSGQVLGIYSNGVTKVVGQIALALFTNPGGLMKVGGNAYLPTVNSGEPIVGPAD 368 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G+LE SN + E MI + F + + +I +++ + E + Sbjct: 369 SGGRGKIASGYLEMSNVDLAQEFTSMIMAQRGFQANSRVITTSDEVLQELVN 420 >gi|254455211|ref|ZP_05068645.1| flagellar basal body FlaE domain protein [Octadecabacter antarcticus 238] gi|198263495|gb|EDY87768.1| flagellar basal body FlaE domain protein [Octadecabacter antarcticus 238] Length = 267 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 101/266 (37%), Gaps = 31/266 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFVAS-- 61 F L+ +S V++N++N T FR FS++ GA + + + V S Sbjct: 2 FGTILSGMSTSMFEISVVSNNVANASTTAFRKSSASFSDLYSGASAETVSRTSTGVGSIV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGII-----LTRDGRFKVTDDGSL 114 + + + G+ + L+ AL G F +P G + TRDG F + + G L Sbjct: 62 EQTRQNTKQGALMERDGVLNMALAGSGMFVTTTPNSDGTLSEALNFTRDGEFALDESGVL 121 Query: 115 VSAS-----GKYPVLDMASVPIQIP------QKDEIFNVGEKGEI-----SQKGKVIATM 158 S++ G + I IP K VG G I Q KV + Sbjct: 122 RSSTNDIVYGFDGIGGTTLQKIVIPFVNETDTKLTSIEVGSDGLIEATYGEQGPKVAGQL 181 Query: 159 GLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQM 213 + + + + S + P ++G +V+ G LE SN N E+ + Sbjct: 182 AVATFANASSLQQLGLGSFQASQASGAPSFGIAGSEGFGSVQVGKLEASNVNLTTELTSL 241 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I Q+F+ + ++ + + R Sbjct: 242 IRAQQQFSGSSRILQAYSDMIEKLTR 267 >gi|149202207|ref|ZP_01879180.1| flagellar proximal rod protein FlgF [Roseovarius sp. TM1035] gi|149144305|gb|EDM32336.1| flagellar proximal rod protein FlgF [Roseovarius sp. TM1035] Length = 253 Score = 136 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 91/254 (35%), Gaps = 19/254 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI-----KVKFSEVVGAIKNDIDQK 55 M L A A N++N G+R V+F +++ + + Sbjct: 1 MDRMIYTALNALGVNRDSQVAQAQNLANQTVPGYRRDLPNEGGVRFLDMM----EGLTTR 56 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 V +G S+E G T ELD A+ +F + G L+R G + DG+L Sbjct: 57 AFQVETGPAGFSQETGRLTRTDEELDVAIADRGFFYVMPESGDPALSRRGDLRRDTDGTL 116 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDMSQG 168 + +G +L P+Q+P + + GEI +G + L +V + Sbjct: 117 RNGAGD-AMLGADMAPLQVPAY-RNIRITDIGEIYIQPLDDPEGDPVLAGVLATVIPPED 174 Query: 169 F-VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + + G + V +G LE SN N + E+ + + + F ++ Sbjct: 175 VALTKGADGQIRTVEGVLPPPNQQAEVLQGTLESSNVNPVEELLSTMQMQRNFELGMRMV 234 Query: 228 DENEKSMLEAIRNI 241 + R + Sbjct: 235 LTARELDESGARTM 248 >gi|11386808|sp|P57423|FLGF_BUCAI RecName: Full=Flagellar basal-body rod protein flgF gi|25403600|pir||F84969 flagellar basal-body rod protein flgF [imported] - Buchnera sp. (strain APS) gi|10039012|dbj|BAB13046.1| flagellar basal-body rod protein flgF [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 244 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 29/249 (11%) Query: 12 QLALEQ---RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 +A Q + S +++N++N T GF+ K F+ N + S KEY + Sbjct: 1 MIAANQLLEKQSIISNNLANISTTGFK-EKFIFA---IQNHNVKNLYNSDKKITKEYYNL 56 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G TG LD ++ D W ++ G T++G K+ L + V+ Sbjct: 57 SPGILRYTGRNLDLFIKDDGWLTVKDTNGQEAYTKNGHLKINSKRKLTIQDNE--VIG-N 113 Query: 128 SVPIQIPQKDEIFNVGEKGEISQ--------KGKVIATMGLYS------VDMSQGFVRRE 173 + I IP+ I + G I+ I ++ L + G + Sbjct: 114 NCNIIIPKNI-ILKILSNGVITSVKNKHKHIVETKIGSLKLVQLPSQDLIQNENGLFYLK 172 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI---DEN 230 + ++ + V+ G LE+SN N+ M +MI ++F +I D+N Sbjct: 173 KNNEINKKHTNTIKHSKKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKMISMCDQN 232 Query: 231 EKSMLEAIR 239 + + I Sbjct: 233 AEYANQLIN 241 >gi|89902477|ref|YP_524948.1| hypothetical protein Rfer_3717 [Rhodoferax ferrireducens T118] gi|89347214|gb|ABD71417.1| protein of unknown function DUF1078-like [Rhodoferax ferrireducens T118] Length = 404 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVAS 61 SF GL+ A + L + +N++N +T G ++ + +F ++V VA Sbjct: 2 SFQTGLSGLNASSRSLDVIGNNIANANTTGMKSSRAEFGDLVASSLGAGGSSGAGIGVAV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 G G+ TG +LD A+ G +F L P G TRDG FK+ +G + + SG Sbjct: 62 GSISQQFSQGNINITGNDLDVAINGGGFFQLALPDGSAAYTRDGSFKLDANGYIKTNSGA 121 Query: 121 YPVL 124 + Sbjct: 122 NVLG 125 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 10/135 (7%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGF 169 V+ G + + P + +GE G+I+ + ++ + L QG Sbjct: 268 VTQFGAAFAVSNLTQDGYAPGELTGLKIGENGQITARYSNGQTQIAGQLSLADFRNVQGL 327 Query: 170 VR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 NS ++ P+ GV ++ G LE+SN + E+ M+ + + + Sbjct: 328 SPIGGNSWVASYTSGDPVLGSPGVGKFGALRSGALEESNVDLTAELVNMMTAQRAYQANA 387 Query: 225 TLIDENEKSMLEAIR 239 I ++ M + Sbjct: 388 QTIKTQDQVMSTLVN 402 >gi|195940721|ref|ZP_03086103.1| flagellar basal body rod protein FlgF [Escherichia coli O157:H7 str. EC4024] Length = 186 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 21/190 (11%) Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G T LD AL+ D W A+++ G TR+G +V+ G L + G +PV+ Sbjct: 1 MTPGQMDYTARPLDVALQQDGWLAVQTADGGEGYTRNGNIQVSATGQL-TIQG-HPVMGE 58 Query: 127 ASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGIS 178 A P+ +P+ E + G IS + + L + ++ V+R + G+ Sbjct: 59 AG-PLTVPEGSE-LTIAADGTISALNPGDPANTVAPVGRLKLVKAEGNE--VQRGDDGMF 114 Query: 179 P------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 L+ + V G LE SN + M MI ++F +I ++ Sbjct: 115 RLTQAAQATRGATLQADPTIRVMSGVLEGSNVKPVEAMTDMIASARRFEMQMKIISSVDE 174 Query: 233 SMLEAIRNIA 242 + +A + +A Sbjct: 175 NASKANQLLA 184 >gi|325295417|ref|YP_004281931.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065865|gb|ADY73872.1| fagellar hook-basal body protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 568 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 17/151 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M SF A + LS ++DN++N +TVGF+ F +++ Sbjct: 1 MLQSFYTAFTGLNADKTWLSVISDNIANVNTVGFKKENAVFEDLLARSLTTFKNGAPVNQ 60 Query: 56 --ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 G+F++T LD AL+G+ +F ++ G TR+G F++ +G Sbjct: 61 EIGGGTFISTTVKDFSQGTFMNTNNPLDLALDGEGFFMVKDETGVTYYTRNGEFRLDANG 120 Query: 113 SLVSASGKYP---VLDMAS------VPIQIP 134 L++ G +LD I IP Sbjct: 121 DLINMLGMKVQGWMLDEQGNLAGAVGAINIP 151 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 139 IFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDLSGV 192 V E G I GKV IA + + + + VR+ N PN+ TP+ GV Sbjct: 457 SVAVSEDGTIRATYTNGKVKDIARLAVATFKDKEMLVRKGNWLYVPNVQTFTPVIMPGGV 516 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V+ G LE SN + E +I + + + +I +++ + E + Sbjct: 517 ISKVRSGMLEMSNVDIASEFINLITAQRAYQANARVITTDDQILQETMN 565 >gi|114046838|ref|YP_737388.1| flagellar hook protein FlgE [Shewanella sp. MR-7] gi|113888280|gb|ABI42331.1| flagellar basal body FlaE domain protein [Shewanella sp. MR-7] Length = 453 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDSA 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEIFNVGEKGEISQK 151 G Y PV + P+QIP E + Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVTLQMN 167 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 +GE G I+ G + + L QG + N+ ++ P Sbjct: 340 TNVEIGEDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGNTSWKASLESGPALAGEPN 399 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + ++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|42524754|ref|NP_970134.1| hypothetical protein Bd3395 [Bdellovibrio bacteriovorus HD100] gi|39576964|emb|CAE78193.1| flgE [Bdellovibrio bacteriovorus HD100] Length = 427 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---DQKIS 57 + +S G++ A + L + DN++N +T+GF+ + +F +++ I +Q Sbjct: 3 ILSSLYTGVSGMTAQGEALGVIGDNIANANTIGFKASRAEFQDIISKNLKGIVGGNQIGR 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 V G G+ +T D A+ GD +F ++ G TRDG F +G LV+ Sbjct: 63 GVKIGAVNPILSQGNIDATEKVTDLAISGDGYFKVKGSDGESYTRDGSFHFDREGYLVTN 122 Query: 118 S 118 Sbjct: 123 D 123 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGE---ISQKGKV--IATMGLYSVDMSQGFVRRENSGI------SPNIPPTPLED 188 + ++G + G+ +A + L + + + N+ + P Sbjct: 315 LSFNDEGTLTAVYSNGQANDLAQIALAKFENPEALFKVGNNRLKESRDSGTASVGAPGAA 374 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE S + E MI + F + I ++ + E I+ Sbjct: 375 GRG-KLFAKSLERSTVDLATEFVNMIQNQRGFQANAKTITTTDELLNEVIQ 424 >gi|307718606|ref|YP_003874138.1| flagellar hook protein [Spirochaeta thermophila DSM 6192] gi|306532331|gb|ADN01865.1| flagellar hook protein [Spirochaeta thermophila DSM 6192] Length = 462 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N+SN +T GF+ +V F +++ + + V Sbjct: 1 MMRSLYAGVSGLQNHQIRMDVIGNNISNVNTTGFKKGRVNFHDMISQTLSGAARPTEEVG 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 GS +TG D A++G+ +F L TR G F + Sbjct: 61 GVNPKQVGLGMTIASIDTIHTQGSLQTTGVMTDVAIQGEGFFILRKGDRSFYTRAGVFGL 120 Query: 109 TDDGSLVSASGKYPVLD 125 ++G LV+ + V Sbjct: 121 DEEGYLVNPANGLRVQG 137 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS----GISPNIPPTPLED 188 E F + + G I+ + + + L + G + + ++ P + Sbjct: 348 EGFKIDQNGVITGVYSNGNNRPLGQIALATFVNPGGLEKEGETMFRVSLNSGDPNVGPPN 407 Query: 189 LSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + MI + F + + I +++ + E + Sbjct: 408 FAGKGKLIAGALEMSNVDLAEAFTDMIVTQRGFQANSRTITTSDQMLQELLT 459 >gi|113969606|ref|YP_733399.1| flagellar hook protein FlgE [Shewanella sp. MR-4] gi|113884290|gb|ABI38342.1| flagellar basal body FlaE domain protein [Shewanella sp. MR-4] Length = 453 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDSA 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEIFNVGEKGEISQK 151 G Y PV + P+QIP E + Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVTLQMN 167 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 +GE G I+ G + + L QG + N+ ++ P Sbjct: 340 TNVEIGEDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGNTSWKASLESGPALAGEPN 399 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + ++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|163783988|ref|ZP_02178953.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] gi|159880748|gb|EDP74287.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] Length = 327 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 8/150 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M SF G A A ++ LS ++DN++N +T+GF+ + F +++ + Sbjct: 1 MIQSFYTGNAGLNANQKWLSVISDNIANVNTIGFKAERANFEDLIASSITSFANNAPKNM 60 Query: 56 --ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 G G+ +T D AL+G+ +F ++ +G TR G+F+ +G Sbjct: 61 EIGGGSFIGSTTKDFSQGALKNTNIATDLALDGEGFFMVQDKQGVTYYTRAGQFRTDANG 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 L++ +G Y I N+ Sbjct: 121 DLINLNGMYLQGWSLDANGNISGSIGKINI 150 >gi|42528268|ref|NP_973366.1| flagellar hook protein FlgE [Treponema denticola ATCC 35405] gi|4426943|gb|AAD20617.1| flagellar hook protein FlgE [Treponema denticola] gi|41819538|gb|AAS13285.1| flagellar hook protein FlgE [Treponema denticola ATCC 35405] Length = 463 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G+ + R+ + +N++N +T GF+ +V F +++ + + Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G+ +TG D A++G+ +F L+ TR G F + Sbjct: 61 GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G+LV+ + V Sbjct: 121 DKEGTLVNPANGMRVQG 137 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 E F + + G I+ G + I + + G + + + + Sbjct: 349 ENFRIDQSGIITGVYSNGVRQEIGQIAMAGFANQGGLEKAGQNTYVQSNNSGIANVSTSG 408 Query: 193 TVKRGF-----LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 TV +G+ LE SN + + MI + F + I ++ +MLE + N+ Sbjct: 409 TVGKGYFIGGTLEMSNVDLTDQFVDMIVTQKGFQAGAKTIQTSD-TMLETVLNL 461 >gi|306820122|ref|ZP_07453770.1| flagellar hook protein FlgE [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551900|gb|EFM39843.1| flagellar hook protein FlgE [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 474 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 12/154 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S N +++ + R+ + +N++N +TV F+ + F + G+ + Sbjct: 1 MMRSMNSAVSSLKNHQARMDVIGNNIANVNTVAFKAARTTFKDTYSQLTRAASGSSGDRG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S + G+ +T D ++G+ +F ++ P G TRDG F V Sbjct: 61 GINPGQIGLGMNLSSIDNAMDKGTVETTNINTDLYIDGEGFFMVDGPDGRFYTRDGNFGV 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 ++G LV+ +G Y + A I +K + V Sbjct: 121 DEEGYLVNKNGNYVMGYQADKDGNIIEKIDKIQV 154 Score = 78.5 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT------PL 186 ++G G++ + K + + + G ++ ++ SP P Sbjct: 360 TKMSIGSDGKVIGQFNNGDTKALGQIVTATFSNVNGLQKQGDNLWSPTENSGEANINKPG 419 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E MI + F + + +I ++ + E + Sbjct: 420 SGGNGA-LLSGALEMSNVDLAKEFTNMIVTQRGFQANSRVITTTDQMLEELVN 471 >gi|328948413|ref|YP_004365750.1| flagellar hook-basal body protein [Treponema succinifaciens DSM 2489] gi|328448737|gb|AEB14453.1| flagellar hook-basal body protein [Treponema succinifaciens DSM 2489] Length = 463 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N+SN +T GF+ + F +++ N + V Sbjct: 1 MMRSLYAGVSGLQNHQTRMDVIGNNISNVNTYGFKKGRATFQDMISQQINGAARPTEEVG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 G+ +TG D A++G+ +F L++ +R G F Sbjct: 61 GVNPKEVGLGMSVATIDTIFTQGNLQTTGNTTDLAIQGNGFFVLKNGDETFYSRAGVFGT 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G+LV+ + V Sbjct: 121 DSNGTLVNPANGLRVQG 137 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 11/111 (9%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + F + + G I+ G V I + + S G ++ ++ + +I Sbjct: 349 DNFKIDQSGIITGVYSNGSVRTIGQVAMASFTNQGGLEKKGDNTYAESINSGMANIGESG 408 Query: 193 T-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T + G LE SN + ++ MI + F S I + SMLE + Sbjct: 409 TQGKGSMLSGTLEMSNVDLTEQLTDMIVTQRGFESNAKTIQTGD-SMLETV 458 >gi|228938885|ref|ZP_04101485.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971766|ref|ZP_04132387.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978375|ref|ZP_04138752.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis Bt407] gi|228781392|gb|EEM29593.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis Bt407] gi|228787856|gb|EEM35814.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820734|gb|EEM66759.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 249 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 19/248 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVV---GAIKNDIDQKISFVASG 62 + QR++ ++N++N T GF+ + + + +I V Sbjct: 2 GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGVVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDGSLVSA 117 +++ G+ T + DF L+ A +F LTRDG F + D L ++ Sbjct: 62 ATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQTS 121 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRRE 173 SG + V+ + I+IP+ + V G I+Q + + V+RE Sbjct: 122 SGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEITQNNIARLQTKTVDAETNARLVQRE 179 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + VK LE+SN + EM ++ + + ++ +K Sbjct: 180 NKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKI 239 Query: 234 MLEAIRNI 241 + I Sbjct: 240 YEKEANEI 247 >gi|325474542|gb|EGC77728.1| flagellar hook protein FlgE [Treponema denticola F0402] Length = 463 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G+ + R+ + +N++N +T GF+ +V F +++ + + Sbjct: 1 MMRSLFSGVTGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G+ +TG D A++G+ +F L+ TR G F + Sbjct: 61 GVNPKEVGLGMMVASIDTIFTQGALQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGI 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G+LV+ + V Sbjct: 121 DKEGTLVNPANGMRVQG 137 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 E F + + G I+ G + I + + G + + + + Sbjct: 349 ENFRIDQSGIITGVYSNGVRQEIGQIAMAGFANQGGLEKAGQNTYVQSNNSGIANVSTSG 408 Query: 193 TVKRGF-----LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 TV +G+ LE SN + + MI + F + I ++ +MLE + N+ Sbjct: 409 TVGKGYFIGGTLEMSNVDLTDQFVDMIVTQKGFQAGAKTIQTSD-TMLETVLNL 461 >gi|182418417|ref|ZP_02949711.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521] gi|237666503|ref|ZP_04526488.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377799|gb|EDT75343.1| flagellar basal-body rod protein FlgG [Clostridium butyricum 5521] gi|237657702|gb|EEP55257.1| flagellar basal-body rod protein FlgG [Clostridium butyricum E4 str. BoNT E BL5262] Length = 379 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 60/372 (16%), Positives = 109/372 (29%), Gaps = 137/372 (36%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDI 52 M G++ +Q+L + +N++N T F++ + +FS+++ N Sbjct: 1 MLRCMYSGISGMKVNQQKLDVIGNNIANVGTTAFKSSRAEFSDMLYQNAGVATSPTSNKG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESP------------- 95 V G + S G+ +STG LD ++G+ +F + + Sbjct: 61 GTNAKQVGLGAKLASIDRVMSQGNALSTGRTLDACVDGEGYFIVGNGLVDYTGAGTTVTK 120 Query: 96 -------RGII--LTRDGRFK-------VTDDGS-------------------------- 113 G+ TRDG F+ VT DG Sbjct: 121 DGKLIGGNGMAINYTRDGNFQLDYEGNLVTSDGYRIMGYPLTATQPKTGTDTVPASGAAA 180 Query: 114 ------------------------LVSASGKYPVLDMASVPIQIP--------------- 134 V A G P++IP Sbjct: 181 DGGSISNKEVTKTGIDSVEPGSAVYVDADGVLKAASDTLQPLRIPDSVFVPGDTTATPAT 240 Query: 135 ----QKDEIFNVGEKGEISQ---KGK--VIATMGLYSVDMSQGFVRRENSGIS------- 178 QK + F +G+ G I+ GK + + + S G + Sbjct: 241 EDSWQKVQSFTIGKDGVITAVLANGKRTALGQVAMASFKNPAGLTAIGGNLYEVSANSGE 300 Query: 179 --------------PNIPPTPLEDLSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 T ++ G + +G LE SN + + MI T+ F + Sbjct: 301 VLIKTSVNIDKKADGTADTTTFDNSKGFGDIIQGCLEASNVDLTEQFTDMITATRSFQAS 360 Query: 224 TTLIDENEKSML 235 + +I ++ + Sbjct: 361 SKMITTGDEILQ 372 >gi|119469950|ref|ZP_01612755.1| flagellar hook protein E [Alteromonadales bacterium TW-7] gi|119446660|gb|EAW27933.1| flagellar hook protein E [Alteromonadales bacterium TW-7] Length = 454 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L A ++ L A+N++N +T GF+ + +F++V + + + V + Sbjct: 2 SFNIALTGIAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSSGRTKNGDGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 GS T LD A+ G+ +FA+ G TR G FK+ D +V A Sbjct: 62 TMVAQQFHQGSLQFTNNSLDLAITGEGYFAMSQDLGAQDFTYTRAGAFKLDKDNFVVDAK 121 Query: 119 GKY 121 G Y Sbjct: 122 GNY 124 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG---ISPNIPPTPLEDLSG 191 ++G G++ + + + SQG + ++ + P E SG Sbjct: 343 IDIGTDGKVVASYSNGDSTFLGQVAMVRFSNSQGLQQVGDTAWKKSLTSGEPIAGEPGSG 402 Query: 192 V--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ LE SN N E+ +I + F + + ++ N ++ +AI I Sbjct: 403 TLGSINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNS-TLQQAILQI 453 >gi|253998488|ref|YP_003050551.1| flagellar hook protein FlgE [Methylovorus sp. SIP3-4] gi|253985167|gb|ACT50024.1| flagellar basal body FlaE domain protein [Methylovorus sp. SIP3-4] Length = 402 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 SF GL+ A + L + +N++N +TVGF+ + +F++V N + + Sbjct: 2 SFQQGLSGLNAASKSLDVIGNNVANANTVGFKQSRAEFADVYANALNGSGTGSAGIGVKV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T LD A+ G+ +F L + I +R+G+F++ G +V++SG++ Sbjct: 62 ADIQRQFTQGNITNTENPLDIAINGNGFFRLSNSGAITYSRNGQFQLDKAGYIVTSSGEH 121 Query: 122 P---VLDMASV 129 V D Sbjct: 122 LTGYVADSNGA 132 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG 191 F+ G I G+ +A + L G N+ + P+ +G Sbjct: 289 SSFSTAADGTIIGRYTNGQAKALAQVVLAKFANPNGLAALGNNQFAETSDAGVPVIGKAG 348 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ EDSN + E+ MI + + + I ++ + + Sbjct: 349 TGGLGVLQSSATEDSNVDLTAELVNMITAQRYYQANAQTIKTQDQVLQTLVN 400 >gi|222834410|gb|EEE72887.1| predicted protein [Populus trichocarpa] Length = 170 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 19/132 (14%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---------QKISFVASGKEYLSKE 69 + +++N++N T GF+ + F E++ + +G ++ E Sbjct: 1 MDVISNNLANVSTTGFKRSRAVFEEMMYQTIRQPGAMSSDQTVLPSGMQIGTGVRPVATE 60 Query: 70 ----VGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVL 124 G+ TG D A+ G+ +F + P G TRDG F+V +G LV++SG Sbjct: 61 RIHTQGNPQQTGNAKDVAIIGNGFFQVTMPDGTTSYTRDGSFQVDQNGQLVTSSGF---- 116 Query: 125 DMASVPIQIPQK 136 + + I +P Sbjct: 117 -VINPAITLPAN 127 >gi|117919772|ref|YP_868964.1| flagellar hook protein FlgE [Shewanella sp. ANA-3] gi|117612104|gb|ABK47558.1| GCN5-related N-acetyltransferase [Shewanella sp. ANA-3] Length = 453 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDSA 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEIFNVGEKGEISQK 151 G Y PV + P+QIP E + Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVTLQMN 167 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 13/115 (11%) Query: 138 EIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENSG------ISPNIPPTPL 186 +GE G I+ G + A + L QG + N+ P + P Sbjct: 340 TNVEIGEDGLITASYSNGSTVPLARVALVRFANEQGLTQVGNTSWKASLSSGPALAGEPN 399 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G ++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFG-SLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|85859175|ref|YP_461377.1| flagellar hook protein [Syntrophus aciditrophicus SB] gi|85722266|gb|ABC77209.1| flagellar hook protein [Syntrophus aciditrophicus SB] Length = 518 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKIS 57 M + IG A ++++ + +N++N+ T+G+++ +F+ ++ + Q Sbjct: 12 MSNALWIGTTGLNASQRQMDIIGNNLANSSTLGYKSADTQFANMLSQSLTSGSGSFQVGQ 71 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 VA + GSF STG+ D A++G+ +F ++ G I TR G F + DG LV Sbjct: 72 GVAISSVNTKFDQGSFESTGSVTDMAIDGEGFFPVKDKEGAIYYTRAGAFVIDKDGYLVD 131 Query: 117 ASGKYPVLDMA 127 +G Y V + Sbjct: 132 VNG-YRVQGIN 141 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + +V + G IS G+ + + L + + + N + + G Sbjct: 405 KSLSVEKDGIISGIFTNGQTSDLGQVVLANFPNVGALRKIGSYFAETNFSGAAIINSPGT 464 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E MI+ + + + +I +++ + E + Sbjct: 465 GGLGEIMSNSLEQSNTDVSMEFVNMINAQRAYQASARIITTSDEMLTELMN 515 >gi|220932517|ref|YP_002509425.1| flagellar hook protein FlgE, epsilon proteobacterial [Halothermothrix orenii H 168] gi|219993827|gb|ACL70430.1| flagellar hook protein FlgE, epsilon proteobacterial [Halothermothrix orenii H 168] Length = 519 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 25/184 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ A + R+ + +N++N +TVG+++ V F E++ Sbjct: 1 MMRSMYAGVSGLKAHQTRMDVIGNNIANVNTVGYKSSSVTFKEMLSQTLRGAKAPQGGRG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + G+ TG D A++G+ +F + + + + TR GR + Sbjct: 61 GVNPMQVGLGVGVGSITVDHTQGNLQPTGVTTDLAIQGNGYFVVNNGQKNLFTRAGRLNL 120 Query: 109 TDDGSLVSASGKYPVL-------------DMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 D+G LV+ S + + I I + I N G + G + Sbjct: 121 DDNGYLVNVSNGFVIQGWMADISTGTINSGQDPENIHITDEYSIMNARATGNATISGNLD 180 Query: 156 ATMG 159 + G Sbjct: 181 SQFG 184 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPN---IPPTPLEDL 189 E F + + G I+ + I + + G ++ + SP+ P E Sbjct: 405 EGFTIDDGGVITGSYSNGLVRPIGQIAIAYFVNPSGLMKEGETLFSPSENSGDPQIGEAG 464 Query: 190 SGVT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG + G LE SN + + MI + F + + +I ++ + + + Sbjct: 465 SGGRGKISVGNLEMSNVDLAEQFTDMITTQRGFQANSKIITTTDQMLQDLVN 516 >gi|228964756|ref|ZP_04125863.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar sotto str. T04001] gi|228795006|gb|EEM42505.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar sotto str. T04001] Length = 249 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 90/248 (36%), Gaps = 19/248 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASG 62 + QR++ ++N++N T GF+ + + + S V Sbjct: 2 GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDGSLVSA 117 +++ G+ T + DF L+ A +F LTRDG F + D L ++ Sbjct: 62 ATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQTS 121 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRRE 173 SG + V+ + I+IP+ + V G ++Q + + V+RE Sbjct: 122 SGAF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDAETNARLVQRE 179 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + VK LE+SN + EM ++ + + ++ +K Sbjct: 180 NKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKI 239 Query: 234 MLEAIRNI 241 + I Sbjct: 240 YEKEANEI 247 >gi|149174025|ref|ZP_01852653.1| flagellar basal-body rod protein FlgG [Planctomyces maris DSM 8797] gi|148847005|gb|EDL61340.1| flagellar basal-body rod protein FlgG [Planctomyces maris DSM 8797] Length = 542 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 40/231 (17%) Query: 15 LEQRL-----------STVADNMSNTDTVGFRTIKVKFSEVVG------AIKNDIDQKIS 57 L+QRL + +N++N T+GF+ + V+F + A + + Sbjct: 264 LQQRLRPTVDALRLSRDVIVNNIANAGTIGFKRLYVEFESLPYEYVKTPASEEAETEPPI 323 Query: 58 FVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 V G + +S+ G + TG ELD A+EG + + TR GR +D Sbjct: 324 AVGMGSQVLQTRISQTSGELLKTGRELDIAIEGQGFLQVRLGETTAFTRTGRLIFDEDRR 383 Query: 114 L--VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------QKGKVIATMGLYSVDM 165 L + Y ++ I++P + + E G ++ + + + + Sbjct: 384 LCIRGSQHNYLIVPE----IKLPAEAHSIQISESGIVTALLADVAEEVTVGELQIACFTD 439 Query: 166 SQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEM 210 RE+ + TP +G+ V+ G LE SN + E+ Sbjct: 440 PSELFPRESCLFTTTPRAGAARVLTPGAKGAGL-VRSGVLEASNVSITEEL 489 >gi|167623361|ref|YP_001673655.1| flagellar hook protein FlgE [Shewanella halifaxensis HAW-EB4] gi|167353383|gb|ABZ75996.1| flagellar basal body FlaE domain protein [Shewanella halifaxensis HAW-EB4] Length = 453 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ + ++ L+T A+N++N +T GF+ + +F++V + N VA+ Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S G TR G FK + +V ++ Sbjct: 62 SQVAQQFHQGSMAFTNNSLDMAINGGGFFVTSSEVGSQDHSYTRAGAFKFDSNNYIVDSA 121 Query: 119 GK----YPVLDMASV---------PIQIPQKDEI 139 G +PV + P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTTKPVQIPDTAGS 155 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 VG G I G + A + L S QG + N+ ++ P Sbjct: 340 TNVEVGADGLINASYSNGSTVPLARVALVSFANEQGLSQAGNTSWKASLDSGPALAGEAN 399 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ LE SN + E+ +I + F + + ++ N ++ + I I Sbjct: 400 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTILQI 452 >gi|332533175|ref|ZP_08409044.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis ANT/505] gi|332037457|gb|EGI73911.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis ANT/505] Length = 455 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 19/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L A ++ L A+N++N +T GF+ + +F++V + + + V + Sbjct: 2 SFNIALTGLAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSSGKTKNGDGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVSAS 118 GS T LD A+ G+ +FA+ + + TR G FK+ D +V A Sbjct: 62 TMVAQQFHQGSLQFTNNSLDLAITGEGYFAMTDDLSSQDLTYTRAGAFKLNQDNFMVDAK 121 Query: 119 GK----YPVLDMAS----------VPIQIPQKDEIFNVGEK 145 G +PV PIQIP E Sbjct: 122 GNFLQAFPVDSSTGDTTSVSLSTTDPIQIPDSSGSPRATEN 162 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDLSG 191 ++G G+I + + + SQG + ++ +I P E SG Sbjct: 344 IDIGTDGKIVASYSNGDSTFLGQVAMVRFPNSQGLSQVGDTSWKQSIDSGEPVAGEAGSG 403 Query: 192 V--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN N E+ +I + + + + ++ N ++ Sbjct: 404 TFGGINSSALEQSNTNLTNELVDLITAQRNYQANSRALEVNSTIQQSILQ 453 >gi|257457611|ref|ZP_05622778.1| flagellar hook protein FlgE [Treponema vincentii ATCC 35580] gi|257444997|gb|EEV20073.1| flagellar hook protein FlgE [Treponema vincentii ATCC 35580] Length = 463 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T GF+ +V F +++ + + V Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNIANVNTTGFKRGRVNFQDLISQQLSGASRPTEEVG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 G+ STG D A++G+ +F L+S TR G F V Sbjct: 61 GVNPKEVGLGMMVASIDTVHTQGALQSTGINTDIAVQGNGFFVLKSGEKSFYTRAGAFGV 120 Query: 109 TDDGSLVSASGKYPVLD 125 DG++V+ + V Sbjct: 121 DRDGTMVNPANGMRVQG 137 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSG 191 E F + + G I+ I + + G + EN+ + N SG Sbjct: 349 ENFKIDQSGIITGVYSNGVSHEIGQLAMAGFANQGGLEKAGENTYVQSNNSGIANITTSG 408 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V + G LE SN + + MI + F + I ++ +MLE + N+ Sbjct: 409 VMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSD-TMLETVLNL 461 >gi|119503644|ref|ZP_01625727.1| flagellar hook protein [marine gamma proteobacterium HTCC2080] gi|119460706|gb|EAW41798.1| flagellar hook protein [marine gamma proteobacterium HTCC2080] Length = 410 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 61/141 (43%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A + L +++N++N TVGF+ + +F+E+ + + V + Sbjct: 2 AFSTAISGIKAAQANLDVISNNIANASTVGFKASRAQFAEIYASSVSGGSNAGQGVELTE 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 GS TG+ LD A+ G+ +F + + TR G F+V DG L + SG Sbjct: 62 IRAEFSQGSLDFTGSGLDLAISGNGFFIVSNAGASEYTRAGSFQVDRDGFLTNESGNRLQ 121 Query: 124 LDMASVPIQIPQKDEIFNVGE 144 + I + + Sbjct: 122 GYQGNTDGVITGELGDLFIDT 142 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 + I + L S + G S G P G ++ +E +N + Sbjct: 317 RAIGQVALASFRNNNGLQPVGGSNYVESFGSGGPNIGVPGNSGRG-NIQSSAVEQANVDI 375 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + F + +I +++ I Sbjct: 376 TQELVNLIVAQRNFQANAQVISTEDQATQAVIN 408 >gi|126175146|ref|YP_001051295.1| flagellar hook protein FlgE [Shewanella baltica OS155] gi|125998351|gb|ABN62426.1| flagellar basal body FlaE domain protein [Shewanella baltica OS155] Length = 460 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNAKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDMAIKGGGFFVTSSELGTLDHAFTRAGAFKVDSNNYMVDSA 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEI 139 G Y PV + P+QIP Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGS 155 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 +G G I+ G +A + L QG + N+ ++ P Sbjct: 347 TNVEIGADGLITASYSNGSTVALARVALVRFANEQGLTQVGNTSWKASLASGPALAGEAN 406 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 407 SGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 459 >gi|71280733|ref|YP_268222.1| flagellar hook protein FlgE [Colwellia psychrerythraea 34H] gi|71146473|gb|AAZ26946.1| flagellar hook protein FlgE [Colwellia psychrerythraea 34H] Length = 554 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 13/191 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L ++N++N +TVGF+ + +F +V + + + V + Sbjct: 2 SFNIALSGLNAAQKDLDVSSNNIANVNTVGFKESRAEFVDVYASSLLAAGKTKVGDGVLT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 GS T LD A+ G+ +FA G TR G+FK+ D +V++ Sbjct: 62 ADVAQQFSQGSIQFTNNALDLAITGNGFFATVPELGSLETSYTRAGQFKLNSDNFVVNSQ 121 Query: 119 GKY----PVLDMASVPIQIPQKDEIFNV-GEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 G + PV S E + E G ++ +V M L G++ Sbjct: 122 GGHLLGFPVNPDGSSASVSLSTAEPIRIPTESGTPTKTSEVDVRMNL---PAGAGYITSA 178 Query: 174 NSGISPNIPPT 184 + P P T Sbjct: 179 PANFDPEDPLT 189 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 11/112 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPT---PLEDLSG 191 +G G + + ++ + + + QG + S ++ E SG Sbjct: 443 IEIGVDGLVRATYSNGTSQPLSRIAMVNFANEQGLSQTGGSNWKESLVSGKALAGEAGSG 502 Query: 192 V--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T+ LE SN N E+ +I + F + + + E + + + I I Sbjct: 503 TFGTINSSALEQSNVNLTTELIDLISAQRNFQANSRAL-EVDNQLNQTILQI 553 >gi|228920482|ref|ZP_04083827.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839112|gb|EEM84408.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 249 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 90/248 (36%), Gaps = 19/248 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASG 62 + QR++ ++N++N T GF+ + + + S V Sbjct: 2 GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDGSLVSA 117 +++ G+ T + DF L+ A +F LTRDG F + D L ++ Sbjct: 62 ATHVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQTS 121 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRRE 173 SG + V+ + I+IP+ + V G ++Q + + V+RE Sbjct: 122 SGAF-VIGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIGRLQTKTVDAETNARLVQRE 179 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + VK LE+SN + EM ++ + + ++ +K Sbjct: 180 NKSFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKI 239 Query: 234 MLEAIRNI 241 + I Sbjct: 240 YEKEANEI 247 >gi|58582195|ref|YP_201211.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624088|ref|YP_451460.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426789|gb|AAW75826.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368028|dbj|BAE69186.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 407 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 +FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNMWAESYTSGAARTSAPGTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|289666047|ref|ZP_06487628.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 407 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNMWAESYTSGAARTGAPNTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QVESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|288573021|ref|ZP_06391378.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568762|gb|EFC90319.1| protein of unknown function DUF1078 domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 875 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 24/166 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ A ++RL V +N++N +TVGF+ V F +++ + Sbjct: 1 MLRSLLTGVSGAKAHQKRLDVVGNNIANVNTVGFKKSTVVFQDLLSQTERGAMAPDGNVG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + G+ TG D A++G+ ++ + + + TR G+F + Sbjct: 61 GVNAKQVGLGVQVAGIETIHTQGTVSQTGNRTDMAIQGEGYYVVRNGAENLYTRAGQFVL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + L + Y V V E G IS ++ Sbjct: 121 DSNSDLAMSGTGYRVQGNE------------MTVDEDGVISTGSEL 154 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 14/114 (12%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRREN-------SGISPNIPPTP 185 E F+V G I G+ M L QG V+ N + P+I Sbjct: 761 EDFSVSNDGTIVGIYDNGQNRGLYKMALAMFANPQGLVKTGNTCFSKSINSGDPSIVNAM 820 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E T+ LE SN + E +I + F + +I ++ + E + Sbjct: 821 VEGAG--TIAGSSLEYSNVDITEEFTDLITTQRGFQASARVITTSDSVLEELLN 872 >gi|315186381|gb|EFU20141.1| fagellar hook-basal body protein [Spirochaeta thermophila DSM 6578] Length = 462 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N+SN +T GF+ +V F +++ + + V Sbjct: 1 MMRSLYAGVSGLQNHQIRMDVIGNNISNVNTTGFKKGRVNFHDMISQTLSGAARPTEEVG 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 GS +TG D A++G+ +F L TR G F + Sbjct: 61 GVNPKQVGLGMTIASIDTIHTQGSLQTTGVMTDVAVQGEGFFILRKGDRSFYTRAGVFGL 120 Query: 109 TDDGSLVSASGKYPVLD 125 ++G LV+ + V Sbjct: 121 DEEGYLVNPANGLRVQG 137 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS----GISPNIPPTPLED 188 E F + + G I+ + + + L + G + + ++ P + Sbjct: 348 EGFKIDQNGVITGVYSNGNNRPLGQIALATFVNPGGLEKEGETMFRVSLNSGDPNVGPPN 407 Query: 189 LSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + MI + F + + I +++ + E + Sbjct: 408 FAGKGKLIAGALEMSNVDLAEAFTDMIVTQRGFQANSRTITTSDQMLQELLT 459 >gi|294084417|ref|YP_003551175.1| flagellar proximal rod protein FlgF [Candidatus Puniceispirillum marinum IMCC1322] gi|292663990|gb|ADE39091.1| flagellar proximal rod protein FlgF [Candidatus Puniceispirillum marinum IMCC1322] Length = 251 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 80/240 (33%), Gaps = 10/240 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI--KVKFSEVVGAIKNDIDQKISF 58 M + + S A NMSN G+R + N + Sbjct: 1 MDKFIFTAMNTVNNIYDNRSVRAQNMSNISVPGYRRDLGTKSAGSAFLNVMNGFQSRAFA 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + G T +D A+ G+ +F ++ + LTR G V DG LV+ S Sbjct: 61 LKDNNNIFESAPGQLSQTNEAMDIAIRGEGYFVVKGQGDVSLTRRGDLSVGADGFLVNGS 120 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVRR 172 K +LD PIQ+P E GEI ++ G + L +++ Sbjct: 121 -KAKLLDAELNPIQVPAN-RSITFSENGEIIIEPVGAEAGTRVNIGQLAMTSAVDVQLKK 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G E V + +E SN N E+ I +++ LI ++ Sbjct: 179 FPDGEIRAANGEVPEIDQKPRVIQHNVELSNVNITEELVNSIEDQRQYEINIKLISTAQE 238 >gi|188586026|ref|YP_001917571.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350713|gb|ACB84983.1| protein of unknown function DUF1078 domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 508 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 11/138 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------K 49 M S G++ + RL T+ +N++N +T GF+ +V F + Sbjct: 1 MLRSMYSGVSGLRNHQTRLDTIGNNVANVNTAGFKGDRVTFQDAFNQTLEAASAPNERGG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + Q + G GS +TG + D A+EGD +F + + + TR G F V Sbjct: 61 TNPQQVGLGMNIGSMDTIHTQGSLENTGRDTDLAIEGDGFFVVNDGQSDMFTRVGNFGVD 120 Query: 110 DDGSLVSASGKYPVLDMA 127 +G+LVS Y V A Sbjct: 121 SEGNLVSQGTGYKVQGYA 138 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG 191 E + V G I+ + + + + L G + + P P ++G Sbjct: 394 ETYEVDSAGIITGTYTNGETRQLGQVVLSDFTNPGGLEKLGSGLYQPTRNSGEPSYGIAG 453 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + + MI + F + + I ++ + E + Sbjct: 454 TGGRGEIAPGALEMSNVDMGEQFTDMIVTQRGFQANSRSITTGDEVLQELVN 505 >gi|166712062|ref|ZP_02243269.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzicola BLS256] Length = 407 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 +FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNMWAESYTSGAARTGAPNTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|21231397|ref|NP_637314.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768550|ref|YP_243312.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. 8004] gi|188991641|ref|YP_001903651.1| flagellar hook protein FlgE [Xanthomonas campestris pv. campestris str. B100] gi|21113063|gb|AAM41238.1| flagellar biosynthesis, hook protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573882|gb|AAY49292.1| flagellar biosynthesis, hook protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733401|emb|CAP51602.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 407 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 +FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +FA+ S + TR G F+ +G +++ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQG 119 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKALGQVALNSFVNPQGLQSQGNNMWAESYTSGAARVGAPDTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|326389474|ref|ZP_08211041.1| fagellar hook-basal body protein [Thermoanaerobacter ethanolicus JW 200] gi|325994479|gb|EGD52904.1| fagellar hook-basal body protein [Thermoanaerobacter ethanolicus JW 200] Length = 417 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ A + R+ + +N++N +TVG++ ++ F E+ N Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S G T D +++G+ +F + + + TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G LV+ G Y VL Sbjct: 121 DSNGDLVTPDG-YKVLG 136 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + ++I + + G + N+ + P+ +G Sbjct: 303 ESINIDKYGVVSGIYSNGRRQIIGQIAIADFQNPMGLEKIGNTMFINTVNSGEPMIGAAG 362 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + +I +++ + + + Sbjct: 363 TGTRGSINPGTLEMSNVDLSNEFADMIVTQRGFQANAKVITVSDEILQDLVN 414 >gi|90408060|ref|ZP_01216231.1| flagellar hook protein [Psychromonas sp. CNPT3] gi|90310817|gb|EAS38931.1| flagellar hook protein [Psychromonas sp. CNPT3] Length = 473 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A + L + A+N++N +TVGF+ + +F V N + V++ Sbjct: 2 SFNIALSGISAAQTDLDSTANNIANVNTVGFKESRAEFESVYANSLFTNSKTKVGDGVST 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSAS 118 GS T LD A+ G +FA R + TR G FK+ + +V S Sbjct: 62 AAVAQQFHQGSLKFTQNPLDLAITGSGFFATAGNLEDRDLSYTRSGTFKLNSENFVVDNS 121 Query: 119 GKY----PVLDMA---------SVPIQIPQKDEI 139 G Y PV + + PIQIP+ Sbjct: 122 GNYLQAFPVNEDGTSSSVSLSTTQPIQIPETAGT 155 Score = 68.1 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT- 193 +G+ G + + ++ + + QG + +S I+ PL + Sbjct: 363 VEIGKDGLVKATYSNGTSQPLSRVSIVRFRNEQGLTQTGSSWIATQNSGEPLAGEANSGS 422 Query: 194 ---VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V LE SN N E+ +I + F + + ++ N ++ + I I Sbjct: 423 FGAVNSAALEQSNVNLTTELVDLITAQRNFQANSRALEINN-TLQQTILQI 472 >gi|22126389|ref|NP_669812.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM 10] gi|45441408|ref|NP_992947.1| flagellar basal body rod protein FlgF [Yersinia pestis biovar Microtus str. 91001] gi|108807174|ref|YP_651090.1| flagellar basal body rod protein FlgF [Yersinia pestis Antiqua] gi|108812482|ref|YP_648249.1| flagellar basal body rod protein FlgF [Yersinia pestis Nepal516] gi|145598609|ref|YP_001162685.1| flagellar basal body rod protein FlgF [Yersinia pestis Pestoides F] gi|149366250|ref|ZP_01888285.1| flagellar basal-body rod protein FlgF [Yersinia pestis CA88-4125] gi|162420290|ref|YP_001606474.1| flagellar basal body rod protein FlgF [Yersinia pestis Angola] gi|165926032|ref|ZP_02221864.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. F1991016] gi|165938686|ref|ZP_02227241.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. IP275] gi|166010809|ref|ZP_02231707.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. E1979001] gi|166211025|ref|ZP_02237060.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. B42003004] gi|167401087|ref|ZP_02306590.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420459|ref|ZP_02312212.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425815|ref|ZP_02317568.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467492|ref|ZP_02332196.1| flagellar basal-body rod protein FlgF [Yersinia pestis FV-1] gi|218928923|ref|YP_002346798.1| flagellar basal body rod protein FlgF [Yersinia pestis CO92] gi|229896243|ref|ZP_04511413.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A] gi|229897178|ref|ZP_04512334.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897904|ref|ZP_04513055.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. India 195] gi|229902864|ref|ZP_04517981.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516] gi|270486644|ref|ZP_06203718.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM D27] gi|294504029|ref|YP_003568091.1| flagellar basal-body rod protein FlgF [Yersinia pestis Z176003] gi|21959375|gb|AAM86063.1|AE013853_11 cell-proximal portion of basal-body rod protein [Yersinia pestis KIM 10] gi|45436268|gb|AAS61824.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Microtus str. 91001] gi|108776130|gb|ABG18649.1| flagellar basal-body rod protein FlgF [Yersinia pestis Nepal516] gi|108779087|gb|ABG13145.1| flagellar basal-body rod protein FlgF [Yersinia pestis Antiqua] gi|115347534|emb|CAL20443.1| flagellar basal-body rod protein FlgF [Yersinia pestis CO92] gi|145210305|gb|ABP39712.1| flagellar basal-body rod protein FlgF [Yersinia pestis Pestoides F] gi|149292663|gb|EDM42737.1| flagellar basal-body rod protein FlgF [Yersinia pestis CA88-4125] gi|162353105|gb|ABX87053.1| flagellar basal-body rod protein FlgF [Yersinia pestis Angola] gi|165913300|gb|EDR31922.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. IP275] gi|165922236|gb|EDR39413.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. F1991016] gi|165990153|gb|EDR42454.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. E1979001] gi|166208205|gb|EDR52685.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. B42003004] gi|166962154|gb|EDR58175.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049476|gb|EDR60884.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055214|gb|EDR65011.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680311|gb|EEO76410.1| Flagellar basal-body rod protein flgF [Yersinia pestis Nepal516] gi|229688945|gb|EEO81010.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. India 195] gi|229693515|gb|EEO83564.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701166|gb|EEO89195.1| Flagellar basal-body rod protein flgF [Yersinia pestis Pestoides A] gi|262361785|gb|ACY58506.1| flagellar basal-body rod protein FlgF [Yersinia pestis D106004] gi|262366079|gb|ACY62636.1| flagellar basal-body rod protein FlgF [Yersinia pestis D182038] gi|270335148|gb|EFA45925.1| flagellar basal body rod protein FlgF [Yersinia pestis KIM D27] gi|294354488|gb|ADE64829.1| flagellar basal-body rod protein FlgF [Yersinia pestis Z176003] gi|320015466|gb|ADV99037.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 209 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 13/197 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A+N++N T GFR V I + V Sbjct: 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAV--PIDGPSLATRTMVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ +G LD AL+ D + A++ P G TR+G +++ +G + + G Sbjct: 59 TSTPGVDISQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRE 173 YP++ PI +P + + G IS IA +G + V + G + Sbjct: 118 -YPLMGDNG-PIDVPPQAA-VTIAADGTISALNAGDSPNTIAQLGQIKRVQATAGEMMHG 174 Query: 174 NSGISPNIPPTPLEDLS 190 + G+ P T + Sbjct: 175 DDGLFHLTPETQQARGA 191 >gi|313200563|ref|YP_004039221.1| flagellar basal body flae domain-containing protein [Methylovorus sp. MP688] gi|312439879|gb|ADQ83985.1| flagellar basal body FlaE domain protein [Methylovorus sp. MP688] Length = 402 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 SF GL+ A + L + +N++N +TVGF+ + +F++V N + + Sbjct: 2 SFQQGLSGLNAASKSLDVIGNNVANANTVGFKQSRAEFADVYANALNGSGTGSAGIGVKV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T LD A+ G+ +F L + I +R+G+F++ G +V++SG+ Sbjct: 62 ADIQRQFTQGNITNTENPLDIAINGNGFFRLSNSGAITYSRNGQFQLDKAGYIVTSSGER 121 Query: 122 P---VLDMASV 129 V D Sbjct: 122 LTGYVADTNGA 132 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 F+ G I G+ +A + L G N+ + P+ +G Sbjct: 289 SSFSTAADGTIIGRYTNGQAKALAQVVLAKFANPNGLSALGNNQFAETADAGVPVIGKAG 348 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ EDSN + E+ MI + + + I ++ + + Sbjct: 349 TGGLGTLQSSATEDSNVDLTAELVNMITAQRYYQANAQTIKTQDQVLQTLVN 400 >gi|319790416|ref|YP_004152049.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] gi|317114918|gb|ADU97408.1| flagellar hook-basal body protein [Thermovibrio ammonificans HB-1] Length = 522 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 17/151 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M SF A ++ LS ++DN++N +TVGF+ + F +++ Sbjct: 1 MLQSFYTAFTGLTADKRWLSIISDNIANVNTVGFKAERAVFEDLLARSLTTFKNGAPVNT 60 Query: 56 --ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 V G+F++T LD AL+G+ +F + +G TR+G F++ +G Sbjct: 61 EIGGGVFVSATVKDFSQGTFMNTNNPLDLALDGEGFFMVRDNQGLTYYTRNGEFRLDANG 120 Query: 113 SLVSASGKYP---VLDMASV------PIQIP 134 L++ G +LD I +P Sbjct: 121 DLINMLGMKVQGWMLDDNGNMAGAISNITVP 151 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDLSGV- 192 V E G I GKV IA + + + + VR+ + PN+ TP+ GV Sbjct: 412 VAVSEDGVIKATYSNGKVKDIARLAIATFKDKEMLVRKGSWLYVPNVQTFTPVIMPGGVI 471 Query: 193 -TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V+ G LE SN + E +I + + + +I +++ + E + Sbjct: 472 SKVRSGMLEMSNVDIANEFINLITAQRSYQANARVITTDDQILQETMN 519 >gi|119775450|ref|YP_928190.1| flagellar hook protein FlgE [Shewanella amazonensis SB2B] gi|119767950|gb|ABM00521.1| flagellar hook protein FlgE [Shewanella amazonensis SB2B] Length = 453 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T GF+ + +F++V A N Q V + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTTGFKESRAEFADVYAASIFSNSKTQVGGGVTT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S R TR G FKV + LV ++ Sbjct: 62 TQVAQQFHQGSLQFTSNALDLAISGGGFFVTSADPSARDYSFTRAGAFKVDSNNYLVDSA 121 Query: 119 GKYP-------------VLDMASVPIQIPQKDEIFNVGEK 145 G + V + P+QIP + E Sbjct: 122 GNFLQTFPVDKFGNSTSVSLTTTRPVQIPDTAGSPVMTEN 161 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN-----SGISPNIPPTPLE 187 VGE G I G + + L QG + N S S Sbjct: 340 TNVEVGEDGLIKAAYSNGSTVPLGRVALVRFANEQGLTQVGNTSWKESLASGTALAGEAN 399 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + ++ LE SN + E+ +I + F + + ++ N ++ + I I Sbjct: 400 SGTFGAIRSAALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTILQI 452 >gi|157961171|ref|YP_001501205.1| flagellar hook protein FlgE [Shewanella pealeana ATCC 700345] gi|157846171|gb|ABV86670.1| flagellar basal body FlaE domain protein [Shewanella pealeana ATCC 700345] Length = 453 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ + ++ L+T A+N++N +T GF+ + +F++V + N VA+ Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S G TR G FK + +V ++ Sbjct: 62 SQVAQQFHQGSMQFTNNSLDMAINGGGFFVTSSEVGSQDHSFTRAGAFKFDSNNYIVDSA 121 Query: 119 GK----YPVLDMASV---------PIQIPQKDEI 139 G +PV + P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTTKPVQIPDTAGS 155 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 VG G I G + A + L S QG + N+ ++ P Sbjct: 340 TNVEVGADGLINASYSNGSTVPLARVALVSFANEQGLSQAGNTSWKASLDSGPALAGEAN 399 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|307264876|ref|ZP_07546438.1| fagellar hook-basal body protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920134|gb|EFN50346.1| fagellar hook-basal body protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 417 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ A + R+ + +N++N +TVG++ ++ F E+ N Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S G T D +++G+ +F + + + TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G LV+ G Y VL Sbjct: 121 DSNGDLVTPDG-YKVLG 136 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + ++I + + G + N+ + P+ +G Sbjct: 303 ENINIDKYGVVSGIYSNGRRQIIGQIAIADFQNPMGLEKIGNTMFINTVNSGEPMIGAAG 362 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + +I +++ + + + Sbjct: 363 TGTRGSINPGTLEMSNVDLSNEFADMIVTQRGFQANAKVITVSDEILQDLVN 414 >gi|325921024|ref|ZP_08182906.1| flagellar hook protein FlgE [Xanthomonas gardneri ATCC 19865] gi|325548506|gb|EGD19478.1| flagellar hook protein FlgE [Xanthomonas gardneri ATCC 19865] Length = 407 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 +FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +FA+ S + TR G F+ +G +++ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQG 119 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKALGQVALSSFVNPQGLQSQGNNMWAESYTSGAARIGAPDTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|121607561|ref|YP_995368.1| flagellar basal body FlaE domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552201|gb|ABM56350.1| flagellar basal body FlaE domain protein [Verminephrobacter eiseniae EF01-2] Length = 426 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 11/189 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A + L + N++N +TVGF++ + +F+E+V + D + + Sbjct: 2 GFQQGLSGLNAASKSLDVIGHNVANANTVGFKSGRAEFAEMVASAIGSADGLNAGIGVDV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG- 119 +S++ GS TG LD A+ G +F L P G TR G FK+ DG++++ Sbjct: 62 AAVSQQFGQGSLTITGNNLDVAINGAGFFTLTLPDGTPAYTRSGNFKLDKDGNMITNDAA 121 Query: 120 ---KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 YPV + +F Q G + A L + N Sbjct: 122 RVMGYPVDPATGLRTGAEPVGMVFPTSAPIPAKQTGTITAAFNLDARAPDAA----GNPA 177 Query: 177 ISPNIPPTP 185 P +P TP Sbjct: 178 AQPPVPATP 186 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 11/128 (8%) Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 + Y V ++A I I + G +G+ + L + +QG ++ Sbjct: 303 SQDGYTVGELAG--IDIESNGMLMTRYSNGVTRSEGQ----LALSRIRNAQGLAAVGSNN 356 Query: 177 ISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 P D + ++ G LEDSN + E+ M+ + + + + + Sbjct: 357 WVATHASGPAVVGTASDGNFGALRSGALEDSNVDLTAELVNMMTAQRTYQANAQTVKTQD 416 Query: 232 KSMLEAIR 239 + M + Sbjct: 417 QVMSTLVN 424 >gi|312876506|ref|ZP_07736489.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796717|gb|EFR13063.1| fagellar hook-basal body protein [Caldicellulosiruptor lactoaceticus 6A] Length = 494 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 20/161 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++A A + R+ + DN++N +TVGF++ +V F+ V ++ Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 ++ Q V+ ++ GS T D A+EGD +F + G TR G Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVV-GGDGKAPRFTRAG 119 Query: 105 RFKVTDDGSLVSASGKYPVL---DMASVPIQIPQKDEIFNV 142 F + G+LV+A+G + D + I + N+ Sbjct: 120 NFSLDKMGNLVTATGLNVLGWMYDPENKQIDTTKSPSKINI 160 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 9/113 (7%) Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLS 190 + +I V G ++I + + + G R ++ I+ P + Sbjct: 383 NVDATGKIIGVYSNG----LNQIIGQIAVATFANPAGLQRIGDNLYINTPNSGDPEIGIP 438 Query: 191 GV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ +G LE SN + E MI + + + +I +++ + + + Sbjct: 439 GTGSRGTIFQGTLEMSNVDLAKEFTDMIVTQRGYQANARVITASDELLQDLVN 491 >gi|24215548|ref|NP_713029.1| flagellar hook protein FlgE [Leptospira interrogans serovar Lai str. 56601] gi|45657072|ref|YP_001158.1| flagellar hook protein FlgE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196693|gb|AAN50047.1| flagellar hook protein FlgE [Leptospira interrogans serovar Lai str. 56601] gi|45600309|gb|AAS69795.1| FlgE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 464 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 12/140 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N+SN +T GF+T +V F +++ + + Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELRGASEPKENIG 60 Query: 61 SGKEYL------------SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 GS +TG D A+ G+ +F ++ TR G F + Sbjct: 61 GVNPQQVGLGSLIAAIDKIMTQGSLQTTGKNTDVAISGEGFFIVKDGDKQFYTRAGAFNL 120 Query: 109 TDDGSLVSASGKYPVLDMAS 128 +G V+ + V S Sbjct: 121 DKNGYYVNPANGLKVQGWNS 140 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E F++ G I+ G + +A + + G + ++ S ++ P +G Sbjct: 350 ESFSIDNSGTITGVFSNGVRQPLARVATAVFNNPAGLDKAGDTMFSYSMNSGEPNIGEAG 409 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V + G LE SN + + MI + F + + I +++ + E + Sbjct: 410 VQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTITTSDQMIQEVL 460 >gi|39995527|ref|NP_951478.1| flagellar hook protein FlgE [Geobacter sulfurreducens PCA] gi|39982290|gb|AAR33751.1| flagellar hook protein FlgE [Geobacter sulfurreducens PCA] gi|298504527|gb|ADI83250.1| flagellar hook protein FlgE [Geobacter sulfurreducens KN400] Length = 419 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 1/128 (0%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G++ A + +S + +N+SN +T+GF+ ++ FS+V+ + + Q V Sbjct: 5 SALYTGISGLNANGEAMSVIGNNISNVNTIGFKQGRMLFSDVLSSTISGGSQIGRGVQIQ 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 GSF ST + D A++GD++F +++ G TR G F D +LV+ G Y Sbjct: 65 TVENQFTQGSFESTESGTDLAIQGDSFFVVQNTSGRYYTRAGAFSFNKDKTLVNPEG-YQ 123 Query: 123 VLDMASVP 130 V+ +P Sbjct: 124 VMGYGIIP 131 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 12/128 (9%) Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G Y + I K + V G++ + + + L + G + + Sbjct: 295 TQDGYYQ---GTLTKVTIDDKGYVNGVYSNGQL----QKLYQVALAKFSSTAGLSKAGGT 347 Query: 176 GISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + PL + + LE SN + + +MI + +++ + I Sbjct: 348 LFEETLESGQPLFSDASTPGVGKILANSLEQSNVDMAAQFVKMITTQRGYSANSKTITTA 407 Query: 231 EKSMLEAI 238 ++ + E + Sbjct: 408 DEMLQEVL 415 >gi|312792656|ref|YP_004025579.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179796|gb|ADQ39966.1| fagellar hook-basal body protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 494 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 18/148 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++A A + R+ + DN++N +TVGF++ +V F+ V ++ Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 ++ Q V+ ++ GS T D A+EGD +F + G TR G Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVV-GGDGKAPRFTRAG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQ 132 F + G+LV+A+G VL P+ Sbjct: 120 NFSLDKMGNLVTATG-LNVLGWMYDPVN 146 Score = 82.4 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 9/113 (7%) Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLS 190 + +I V G ++I + + + G R ++ I+ P + Sbjct: 383 NVDATGKIIGVYSNG----LNQIIGQIAVATFANPAGLQRIGDNLYINTPNSGDPEIGIP 438 Query: 191 GV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ +G LE SN + E MI + + + +I +++ + + + Sbjct: 439 GTGSRGTIFQGTLEMSNVDLAKEFTDMIVTQRGYQANARVITASDELLQDLVN 491 >gi|228926808|ref|ZP_04089876.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229090737|ref|ZP_04221970.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-42] gi|228692679|gb|EEL46405.1| Flagellar basal-body rod protein flgG [Bacillus cereus Rock3-42] gi|228832921|gb|EEM78490.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 249 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 21/249 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASG 62 + QR++ ++N++N T GF+ + + + S V Sbjct: 2 GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFKVTDDGSLVS 116 +++ G+ T + DF L+ D +F LTRDG F + D L + Sbjct: 62 ATHVNLVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRR 172 SG + V+ + I+IP+ + V G ++Q + + V+R Sbjct: 121 TSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLVQR 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 EN + VK LE+SN + EM ++ + ++ ++ +K Sbjct: 179 ENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDK 238 Query: 233 SMLEAIRNI 241 + I Sbjct: 239 IYEKEANEI 247 >gi|24374758|ref|NP_718801.1| flagellar hook protein FlgE [Shewanella oneidensis MR-1] gi|24349424|gb|AAN56245.1|AE015762_2 flagellar hook protein FlgE [Shewanella oneidensis MR-1] Length = 453 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDSA 121 Query: 119 GK----YPVLDMASV---------PIQIPQKDEIFNVGEKGEISQK 151 G +PV + P+QIP E + Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQTENVTLQMN 167 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 13/115 (11%) Query: 138 EIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENSG------ISPNIPPTPL 186 +GE G I+ G + A + L QG + N+ P + P Sbjct: 340 TNVEIGEDGLITASYSNGSTVPLARVALVRFANEQGLTQVGNTSWKASLSSGPALAGEPN 399 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G ++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFG-SLSSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|149911702|ref|ZP_01900310.1| flagellar hook protein FlgE [Moritella sp. PE36] gi|149805232|gb|EDM65249.1| flagellar hook protein FlgE [Moritella sp. PE36] Length = 435 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 20/178 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T GF+ + +F +V N + VA+ Sbjct: 2 SFNIALSGINAAQKDLNTTANNIANVNTTGFKESRAEFGDVYATSIFSNAKTSVGNGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G+ +F + + TR G FK+ + + +++ Sbjct: 62 SHIAQQFQQGSLNFTENSLDLAINGNGFFVMADGLESMDRNYTRAGAFKLDANSFVTNSA 121 Query: 119 GKYP----VLDMASV---------PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G Y V D S P+QIP + G + + AT L Sbjct: 122 GNYLQVYDVNDDGSPKAVSMASTKPLQIPDTAGVPE--STGNVDMTMNLPATSPLLDP 177 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG-----ISPNIPPTPLEDL 189 ++G G + + + + + QG + ++G +S Sbjct: 324 IDIGPDGMVLASYSNGRNDKLGMIAMAKFANEQGLSQTGDTGWRASQLSGAAIAGEANSG 383 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + LE SN N E+ +I + + + + ++ N K ++ Sbjct: 384 TFGKINSSALEQSNVNLTSELVNLITAQRNYQANSRTLEVNSKLQDTVLQ 433 >gi|165869539|ref|ZP_02214198.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0488] gi|190566290|ref|ZP_03019208.1| putative flagellar basal-body rod protein [Bacillus anthracis Tsiankovskii-I] gi|218902886|ref|YP_002450720.1| putative flagellar basal-body rod protein [Bacillus cereus AH820] gi|227815455|ref|YP_002815464.1| putative flagellar basal-body rod protein [Bacillus anthracis str. CDC 684] gi|164714979|gb|EDR20497.1| putative flagellar basal-body rod protein [Bacillus anthracis str. A0488] gi|190562425|gb|EDV16392.1| putative flagellar basal-body rod protein [Bacillus anthracis Tsiankovskii-I] gi|218539299|gb|ACK91697.1| putative flagellar basal-body rod protein [Bacillus cereus AH820] gi|227003269|gb|ACP13012.1| putative flagellar basal-body rod protein [Bacillus anthracis str. CDC 684] Length = 249 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 92/249 (36%), Gaps = 21/249 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASG 62 + QR++ ++N++N T GF+ + + + S V Sbjct: 2 GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFKVTDDGSLVS 116 +++ G+ T ++ DF L+ D +F LTRDG F + D L + Sbjct: 62 ATHVNLVQGNIQMTNSDTDFLLD-DGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRR 172 SG + V+ + I+IP+ + V G ++Q + + ++R Sbjct: 121 TSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLIQR 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 EN + TVK LE+SN + EM ++ + ++ ++ +K Sbjct: 179 ENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDK 238 Query: 233 SMLEAIRNI 241 + I Sbjct: 239 IYEKEANEI 247 >gi|152975165|ref|YP_001374682.1| flagellar hook protein FlgE [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023917|gb|ABS21687.1| protein of unknown function DUF1078 domain protein [Bacillus cytotoxicus NVH 391-98] Length = 467 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 29/182 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M S ++ A++ LS ++N++N TVG++ K F +++ Sbjct: 1 MIKSLYTSISGMSAMQNALSVTSNNIANAQTVGYKKQKAVFDDLLYNNTVGAKGDDTKAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFK 107 + + V GS TG A+EG+ +F + G+ TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDYNGGSITMTGINGQVAIEGNGFFVVGDSQGNGVQYTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV---LDMAS--------VPIQIPQKDEIFNVGEKGEISQKGKVIA 156 +++ +V+ G+Y + LD PI IP I GE+S KG +I Sbjct: 121 KSENNYIVNGEGQYVLAYKLDEDGKPDTSHPAGPISIPLGSAI-----DGEVSSKGSLIG 175 Query: 157 TM 158 + Sbjct: 176 NL 177 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 13/114 (11%), Positives = 38/114 (33%), Gaps = 12/114 (10%) Query: 137 DEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTP 185 + + + G + + ++ + + + G ++ N P Sbjct: 352 AMDYKISDNGYVMVTYSDNSTRAVSQLAVATFKNQDGLMKVGNGNYVPTASAGDPFIGVA 411 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ +G + G E SN + E ++ + F +I ++ + E + Sbjct: 412 EQNGAG-KIIGGAQEGSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDDVLNEVVN 464 >gi|226939374|ref|YP_002794447.1| Flagellar hook protein FlgE [Laribacter hongkongensis HLHK9] gi|226714300|gb|ACO73438.1| Flagellar hook protein FlgE [Laribacter hongkongensis HLHK9] Length = 526 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 74/147 (50%), Gaps = 7/147 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F GL+ A ++L + +N++N+ TVGF+ + +F+++ A + + + Sbjct: 2 AFQHGLSGINAASKQLDAIGNNVANSSTVGFKGSRAEFADMFAANFYGVAATQNGIGVNT 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG-- 119 ++++ G+ +TG +LD A+ G+ +F +++ GI TR+G+F++ +G + + +G Sbjct: 62 TLIAQQFGQGNITTTGNQLDLAISGNGFFVMQNANGISYTRNGQFQIDREGYI-NNNGDK 120 Query: 120 --KYPVLDMASVPIQIPQKDEIFNVGE 144 + V D + P + Sbjct: 121 LMGWQVDDRTTPPSVQNGNLGPLKIDN 147 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 17/155 (10%) Query: 100 LTRDG-----RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--- 151 T G K GS + G ++ P + + G +S + Sbjct: 372 YTPAGGGAPLALKFDFSGS--TQFGTSFAVNELVQPGYASAVVSNLQIDKTGIVSARYSN 429 Query: 152 --GKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVT----VKRGFLEDSNA 204 KVI + L + QG N+ + P + G T ++ LEDSN Sbjct: 430 GQTKVIGQVVLANFANQQGLQPIGNNRWMETYNSGNPTLNDPGSTNVGLIQSQALEDSNV 489 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E+ MI + + + I +++ + ++ Sbjct: 490 DLTGELVNMITAQRYYQANAQTIKVHDQVLQSLMQ 524 >gi|299531286|ref|ZP_07044696.1| flagellar hook protein FlgE [Comamonas testosteroni S44] gi|298720693|gb|EFI61640.1| flagellar hook protein FlgE [Comamonas testosteroni S44] Length = 422 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A + L + N++N++T GF+ + F+E+V + + S + Sbjct: 2 GFQQGLSGLNAASKNLDVIGHNIANSNTTGFKASRADFAEMVASAIGSASGQSSGIGVNV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 +S++ GS STG LD A+ G+ +F ++ G I TR G F + +G+L + Sbjct: 62 ASVSQQFRQGSITSTGNNLDIAINGNGFFVVKQSDGSIAYTRAGNFGLDKEGNLKTVDND 121 Query: 121 YP---VLDMASVPIQ 132 V+D ++ IQ Sbjct: 122 NVMGYVVDPSTGKIQ 136 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT- 193 NVG G I + + L + +QG N+ P + S T Sbjct: 311 INVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNKWVATSDSGPALNGSAQTG 370 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE+SN + E+ M+ + + + I ++ + Sbjct: 371 TFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTLVN 420 >gi|78224295|ref|YP_386042.1| hypothetical protein Gmet_3103 [Geobacter metallireducens GS-15] gi|78195550|gb|ABB33317.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 419 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 1/128 (0%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G++ A + +S + +N+SN +T+GF+ ++ FS+V+ + + Q V Sbjct: 5 SALYTGISGLNANGEAMSVIGNNISNVNTIGFKQGRMLFSDVLSSTISGGSQIGRGVQIQ 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 GSF ST + D A++GD++F +++ G TR G F D +LV+ G Y Sbjct: 65 TVENQFTQGSFESTESGTDLAVQGDSFFVVQNDNGRYYTRAGAFTFDKDKTLVNPEG-YQ 123 Query: 123 VLDMASVP 130 V +P Sbjct: 124 VQGYGIIP 131 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 12/129 (9%) Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G Y + I K + V GE+ K + + L + G + + Sbjct: 295 TQDGYYQ---GTLTKVTIDDKGYVNGVYSNGEL----KKLYQVALAKFASTTGLSKAGGT 347 Query: 176 GISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + PL + V LE SN + + +MI + +++ + I Sbjct: 348 LFEETLDSGQPLFSNASTPGVGKVLANSLEQSNVDMAAQFVKMITTQRGYSANSKTITTA 407 Query: 231 EKSMLEAIR 239 ++ + E + Sbjct: 408 DEMLQEVLN 416 >gi|196039147|ref|ZP_03106454.1| putative flagellar basal-body rod protein [Bacillus cereus NVH0597-99] gi|196030292|gb|EDX68892.1| putative flagellar basal-body rod protein [Bacillus cereus NVH0597-99] Length = 249 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 21/249 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASG 62 + QR++ ++N++N T GF+ + + + S V Sbjct: 2 GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFKVTDDGSLVS 116 +++ G+ T ++ DF L+ D +F LTRDG F + D L + Sbjct: 62 ATHVNLVQGNIQMTNSDTDFLLD-DGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRR 172 SG + V+ + I+IP+ + V G ++Q +++ ++R Sbjct: 121 TSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGAEVNNRLIQR 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 EN + TVK LE+SN + EM ++ + ++ ++ +K Sbjct: 179 ENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDK 238 Query: 233 SMLEAIRNI 241 + I Sbjct: 239 IYEKEANEI 247 >gi|302338085|ref|YP_003803291.1| fagellar hook-basal body protein [Spirochaeta smaragdinae DSM 11293] gi|301635270|gb|ADK80697.1| fagellar hook-basal body protein [Spirochaeta smaragdinae DSM 11293] Length = 460 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 12/136 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA- 60 S G++ + R+ + +N+SN +TVGF+ +V F +++ + + V Sbjct: 1 MRSLYAGVSGLQNHQTRMDVIGNNISNVNTVGFKKGRVNFQDLLSQTMSGAARPTDEVGG 60 Query: 61 -----------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 GS +TG D A++GD +F S TR G F + Sbjct: 61 VNPKQVGLGMNVASIDTVHTQGSLQTTGIMTDIAIQGDGFFIERSGDKEFYTRAGAFGLD 120 Query: 110 DDGSLVSASGKYPVLD 125 ++G+LV+ S V Sbjct: 121 ENGTLVNPSNGLRVQG 136 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGIS-PNIPPTPLEDLSG 191 E F + + G I+ + + + L S G + S N SG Sbjct: 346 ESFKIDQSGVITGVYSNGANRTLGQVALASFTNPGGLEKAGESTFVVSNNSGEARIGESG 405 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + G LE SN + + MI + F + + I +++ + E + Sbjct: 406 VAGKGKLIAGALEMSNVDLAEQFTDMIVTQRGFQANSRTITTSDQMLQELLT 457 >gi|228933056|ref|ZP_04095919.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826657|gb|EEM72428.1| Flagellar basal-body rod protein flgG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 249 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 21/249 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASG 62 + QR++ ++N++N T GF+ + + + S V Sbjct: 2 GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFKVTDDGSLVS 116 +++ G+ T ++ DF L+ D +F LTRDG F + D L + Sbjct: 62 ATHVNLVQGNIQMTNSDTDFLLD-DGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRR 172 SG + V+ I+IP+ + V G ++Q + + ++R Sbjct: 121 TSGAF-VMGENHERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLIQR 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 EN + TVK LE+SN + EM ++ + ++ ++ +K Sbjct: 179 ENKSFTLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDK 238 Query: 233 SMLEAIRNI 241 + I Sbjct: 239 IYEKEANEI 247 >gi|264676570|ref|YP_003276476.1| FlgE [Comamonas testosteroni CNB-2] gi|262207082|gb|ACY31180.1| FlgE [Comamonas testosteroni CNB-2] Length = 422 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A + L + N++N++T GF+ + F+E+V + + S + Sbjct: 2 GFQQGLSGLNAASKNLDVIGHNIANSNTTGFKASRADFAEMVASAIGSASGQSSGIGVNV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 +S++ GS STG LD A+ G+ +F ++ G I TR G F + +G+L + Sbjct: 62 ASVSQQFRQGSITSTGNNLDIAINGNGFFVVKQSDGSIAYTRAGNFGLDKEGNLKTVDND 121 Query: 121 YP---VLDMASVPIQ 132 V+D ++ IQ Sbjct: 122 NVMGYVVDPSTGKIQ 136 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT- 193 NVG G I + + L + +QG N+ P + S T Sbjct: 311 INVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNKWVATSDSGPALNGSAQTG 370 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE+SN + E+ M+ + + + I ++ + Sbjct: 371 TFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTLVN 420 >gi|77359722|ref|YP_339297.1| flagellar hook protein FlgE [Pseudoalteromonas haloplanktis TAC125] gi|76874633|emb|CAI85854.1| flagellar biosynthesis; hook protein [Pseudoalteromonas haloplanktis TAC125] Length = 454 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+ A+N++N +T GF+ + +F++V + + + V + Sbjct: 2 SFNIALSGLAAAQKDLNVTANNIANVNTTGFKESRAEFADVYASSVFSSGKTKNGDGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 GS T LD A+ G+ +FA G TR G FK+ D +V A+ Sbjct: 62 TMVAQQFHQGSLQFTNNSLDLAITGEGYFATSQDLGAQDFTYTRAGAFKLNKDNFVVDAN 121 Query: 119 GKY 121 G + Sbjct: 122 GSF 124 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV- 192 ++G G++ + + + SQG + ++G +I P+ G Sbjct: 343 IDIGADGKVVASYSNGDSTFLGQVAMVRFSNSQGLQQVGSTGWKASIASGEPIAGEPGSG 402 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN N E+ +I + F + + ++ N ++ Sbjct: 403 TLGNINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNSTIQQSILQ 452 >gi|188576756|ref|YP_001913685.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576947|ref|YP_001913876.1| flagellar hook protein FlgE [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521208|gb|ACD59153.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521399|gb|ACD59344.1| flagellar biosynthesis hook protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 407 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 +FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 AFNTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNVWAESYTSGAARTSAPNTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QIESGSLESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|302389667|ref|YP_003825488.1| fagellar hook-basal body protein [Thermosediminibacter oceani DSM 16646] gi|302200295|gb|ADL07865.1| fagellar hook-basal body protein [Thermosediminibacter oceani DSM 16646] Length = 404 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 12/154 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ + ++ + +N++N +TVG++ +V F + + Sbjct: 1 MMRSMFSGVTGLRNHQIKMDVIGNNIANVNTVGYKKSRVTFQDTLSQTMRGASSAQGNRG 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 S +TG D A+EGD +F L +G TR G F Sbjct: 61 GTNPMQIGLGMTIAAIDTIHTPTSLEATGNMTDLAIEGDGFFILSDGQGYYYTRAGNFGF 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 + G+LV+ + + V+ + PQ + N+ Sbjct: 121 DEQGNLVNTANGFKVMGWQDSSSKTPQDIKPINI 154 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGV- 192 +V G I+ G+ +A + L + G ++ N N P L+G Sbjct: 292 ISVDSTGTITGVFDNGQTMELAQVALAVFNNPAGLMKAGRNMYTYSNNSGEPQIGLAGTG 351 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E QMI + F + + +I +++ + E + Sbjct: 352 GRGTISPGSLEMSNVDLAEEFTQMIITQRGFQANSRVITASDEMLQELVN 401 >gi|167770210|ref|ZP_02442263.1| hypothetical protein ANACOL_01553 [Anaerotruncus colihominis DSM 17241] gi|167667532|gb|EDS11662.1| hypothetical protein ANACOL_01553 [Anaerotruncus colihominis DSM 17241] Length = 556 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 14/205 (6%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDIDQKI 56 G+A + +QR+ + +N++N +T GF++ +V F ++ Sbjct: 1 MYSGVAGMKSHQQRMDVIGNNIANVNTYGFKSSRVTFRDMFYQNIRNASAGTSTRGGVSP 60 Query: 57 SFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT-D 110 S V G + S S STG LD A+ GD +F ++ G TR G + Sbjct: 61 SGVGYGSQIASIDKLMTQSSMTSTGQPLDCAITGDGFFQVQDSDGNKFYTRAGMLDIDQA 120 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G LV +G + + I + V G + T+ +S Sbjct: 121 TGYLVDLNGYFVLGTQGPDVIGKAPGNSKIKVELDPLEPAAGSKVQTIQNVEYTLSATNY 180 Query: 171 RRENSGISPNIPPTPLEDLSGVTVK 195 + + + V Sbjct: 181 TTAGNVNFNFSLDNEMPTGQNIRVV 205 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 11/110 (10%) Query: 140 FNVGEKGEISQKGK----VIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDL 189 +G G I + ++ + L + D QG + NS + P ED Sbjct: 445 IAIGADGIIRAQNAGKDIIVGRIDLANFDNPQGLDQAGNSYFTATDNSGKAKYAVPGEDG 504 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G +K LE SN + E MI + F + + LI ++ + E I Sbjct: 505 TGA-LKNSALEMSNVDLSQEFSDMIVTQRGFQANSRLITVSDTMLEELIN 553 >gi|268316347|ref|YP_003290066.1| hypothetical protein Rmar_0780 [Rhodothermus marinus DSM 4252] gi|262333881|gb|ACY47678.1| protein of unknown function DUF1078 domain protein [Rhodothermus marinus DSM 4252] Length = 415 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + + R+ +++N++N +T F+ + F+E++G + + Sbjct: 1 MIRSLRTGVSGLKSHQVRMDVISNNIANVNTTAFKRGRAAFNELLGQTLLGVGRTAGGRG 60 Query: 58 --------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 V+ G ++ G+ +TG D + GD +F + I LTR G F + Sbjct: 61 INPSYVGLGVSVGSIDVNFAQGALENTGVATDLGINGDGFFVVRGGDRIYLTRAGNFTIN 120 Query: 110 DDGSLVSASG 119 G LV+ SG Sbjct: 121 RFGELVTNSG 130 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 34/209 (16%) Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTG--TELDFALEGDAWFALESPRGIILTRDGRF 106 ++ ++ + G+ T D+ ++ D F Sbjct: 220 EDGNPLGVTITSGDNLITFDTQGNLDPTEALQTFDWDIDNDGTLE-------------SF 266 Query: 107 KVT---DDGSLVSASGK--YPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIA 156 + D +L +G V D P P F++ ++G + + I Sbjct: 267 TLNLAGADDALTQYAGSTTATVRDQDGQP---PGSLIGFSINQEGIVELNFSNGYQQKIY 323 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + L SV+ G + ++ S +L+ + G LE SN + E Sbjct: 324 QLALGSVNNVNGLQQVGDNLWSLTSSSGDLALGRAGVELNRTVIVAGTLEMSNVDLATEF 383 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 MI + + + +I +++ + E ++ Sbjct: 384 TDMIVTQRGYQASARIITTSDEMLQELVQ 412 >gi|21242727|ref|NP_642309.1| flagellar hook protein FlgE [Xanthomonas axonopodis pv. citri str. 306] gi|294625274|ref|ZP_06703913.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664591|ref|ZP_06729932.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325927875|ref|ZP_08189099.1| flagellar hook protein FlgE [Xanthomonas perforans 91-118] gi|21108203|gb|AAM36845.1| flagellar biosynthesis hook protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600448|gb|EFF44546.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605648|gb|EFF48958.1| flagellar biosynthesis hook protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541715|gb|EGD13233.1| flagellar hook protein FlgE [Xanthomonas perforans 91-118] Length = 407 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNMWAESYTSGAARTGAPDTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|221069322|ref|ZP_03545427.1| flagellar basal body FlaE domain protein [Comamonas testosteroni KF-1] gi|220714345|gb|EED69713.1| flagellar basal body FlaE domain protein [Comamonas testosteroni KF-1] Length = 422 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 13/196 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A + L + N++N+ T GF+ + F+E++ + + S + Sbjct: 2 GFQQGLSGLNAASKNLDVIGHNIANSSTTGFKASRADFAEMIASAIGSASGQSSGIGVNV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 +S++ GS STG LD A+ G+ +F ++ G I TR G F + +G+L + Sbjct: 62 AAVSQQFRQGSITSTGNNLDLAINGNGFFVVKQSDGSIAYTRAGNFGLDKEGNLKTVDND 121 Query: 121 YP---VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 V+D + IQ + G+ I +V++ R Sbjct: 122 NVMGYVVDPTTGKIQSGATPVPMS-------FPTGQPIPAKQTSTVNVELNLDARATDAA 174 Query: 178 SPNIPPTPLEDLSGVT 193 P+ T Sbjct: 175 GDATATPPVAATPRAT 190 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT- 193 NVG G I + + L + +QG N+ P + S T Sbjct: 311 INVGRDGSIVASYSNGVTRTEGQIALAAFTNTQGLGSIGNNKWVATSDSGPALNGSAQTG 370 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE+SN + E+ M+ + + + I ++ + Sbjct: 371 TFGSLQSGALEESNVDLTAELVNMMTAQRSYQANAQTIKTQDQVFSTLVN 420 >gi|296126058|ref|YP_003633310.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] gi|296017874|gb|ADG71111.1| fagellar hook-basal body protein [Brachyspira murdochii DSM 12563] Length = 441 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 12/141 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T GF+ +V F +++ + Sbjct: 1 MMRSLFAGVSGLQNHQTRMDVVGNNIANVNTYGFKRGRVTFKDMISQSLSGAAKPQEDRG 60 Query: 53 ----DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 Q + G+ TG D A++G+ +F + TR+G F + Sbjct: 61 GINPQQVGLGMMVATIDTIHTQGALQVTGVNTDLAIQGEGFFIEKRGNNSYYTRNGAFSL 120 Query: 109 TDDGSLVSASGKYPVLDMASV 129 DG LV+ S Y V +V Sbjct: 121 DRDGYLVNPSIGYKVQGWNAV 141 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN------SGISPNIPPTPL 186 E F+ + G+I+ K + + L + + G + + + T Sbjct: 327 EGFSFDDSGQITGVFTNGNRKTLGQVALAKFNNAGGLEKAGDTLFVASNNSGAANIGTAA 386 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G ++K G LE SN + + MI + F S I ++ + E I Sbjct: 387 AEGRG-SLKAGALEMSNVDLSEQFTDMIVTQRGFQSNARTITTADQMLQEVI 437 >gi|291280096|ref|YP_003496931.1| flagellar hook protein FlgE [Deferribacter desulfuricans SSM1] gi|290754798|dbj|BAI81175.1| flagellar hook protein FlgE [Deferribacter desulfuricans SSM1] Length = 817 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------- 50 M S G+ ++ + + +N++N +TVG++T ++ F +++ + Sbjct: 1 MLRSLYAGITGLNEHQKSMDVIGNNIANVNTVGYKTSRIVFQDLLFQTISGGKAPAGNLG 60 Query: 51 --DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRF 106 + Q + ++ G+ +TG D A++G+ +F + E+ TR G F Sbjct: 61 GINPKQIGTGTSTASVDTIFTQGTLQNTGVTTDMAIQGNGFFVVRSENENENYYTRAGNF 120 Query: 107 KVTDDGSLVSASG 119 DG LV+ G Sbjct: 121 TFDKDGYLVTPDG 133 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 11/129 (8%) Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + YP+ + I + EI GEI K IA +G+ +G ++ ++ Sbjct: 692 TDQNGYPMGSL--ERISVNDTGEIVGAYTNGEI----KKIAQVGIAIFTNQEGLLKVGDT 745 Query: 176 GISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + T + LE+SN + E MI + F + + +I + Sbjct: 746 LFAETPNSGQAAVGQATTGGRGSIAASALENSNVDLAREFVNMITTQRGFQANSRVITTS 805 Query: 231 EKSMLEAIR 239 ++ + E + Sbjct: 806 DELLQELMN 814 >gi|148546706|ref|YP_001266808.1| flagellar basal body FlaE domain-containing protein [Pseudomonas putida F1] gi|148510764|gb|ABQ77624.1| flagellar basal body FlaE domain protein [Pseudomonas putida F1] Length = 584 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKIS 57 SFNIGL+ A ++L +N++N +T GF+ + +F++V +G KN + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKASRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 A +++ G +TG LD ++G +F L + TR G F+ + D + ++ Sbjct: 62 LAAISQQFT---QGDVNTTGNALDMGIQGQGFFVLSDNGSKVYTRAGSFQPSKDNFVETS 118 Query: 118 SG 119 G Sbjct: 119 DG 120 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSG 191 ++ G + + + I + L S QG + ++ P D Sbjct: 471 SNLSIDATGVLFASFSNGQSRAIGQVALASFANEQGLQQIGSTRWTETYNSGIPGIDSPK 530 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE SN N E+ +I + + I M I+ Sbjct: 531 TGTLGAIESNSLEGSNVNLTQELVDLIKAQSYYQANAKTISTESTVMQTIIQ 582 >gi|312135845|ref|YP_004003183.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] gi|311775896|gb|ADQ05383.1| fagellar hook-basal body protein [Caldicellulosiruptor owensensis OL] Length = 489 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 18/148 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++A A + R+ + DN++N +TVGF++ +V F+ V ++ Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVVKSASAPDTASG 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 ++ Q V+ ++ GS T D A+EGD +F + G TR G Sbjct: 61 RGGSNPMQIGLGVSVASADMNMTRGSLQRTDNPTDLAIEGDGFFVV-GGDGKAPRYTRAG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQ 132 F + G+LV+A+G VL P+ Sbjct: 120 NFSLDRMGNLVTATG-LNVLGWMYDPVN 146 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 12/116 (10%) Query: 135 QKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------P 183 + FNV G+I+ ++I + + + G R ++ + Sbjct: 372 GNLQGFNVDASGKITGVYSNGLNQLIGQIAVATFANPAGLQRIGDNLYINTVNSGDPEIG 431 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TP G T+ +G LE SN + E MI + + + +I +++ + E + Sbjct: 432 TPGSGSRG-TISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVITSSDEILQELVN 486 >gi|153001472|ref|YP_001367153.1| flagellar hook protein FlgE [Shewanella baltica OS185] gi|160876203|ref|YP_001555519.1| flagellar hook protein FlgE [Shewanella baltica OS195] gi|217972598|ref|YP_002357349.1| flagellar hook protein FlgE [Shewanella baltica OS223] gi|151366090|gb|ABS09090.1| flagellar basal body FlaE domain protein [Shewanella baltica OS185] gi|160861725|gb|ABX50259.1| flagellar basal body FlaE domain protein [Shewanella baltica OS195] gi|217497733|gb|ACK45926.1| flagellar basal body FlaE domain protein [Shewanella baltica OS223] gi|315268393|gb|ADT95246.1| fagellar hook-basal body protein [Shewanella baltica OS678] Length = 453 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTSNSLDMAIKGGGFFVTASEIGSLDHSFTRAGAFKVDSNNYMVDSA 121 Query: 119 GK----YPVLDMASV---------PIQIPQKDEI 139 G +PV + P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTAKPVQIPDTAGS 155 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 +G G I+ +A + L QG + N+ ++ P Sbjct: 340 TNVEIGADGLITASYSNGSSVPLARVALVRFANEQGLTQVGNTSWKASLNSGPALAGEAN 399 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|212634348|ref|YP_002310873.1| flagellar hook protein FlgE [Shewanella piezotolerans WP3] gi|212555832|gb|ACJ28286.1| Flagellar basal body rod protein FlaE [Shewanella piezotolerans WP3] Length = 453 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ + ++ L+T A+N++N +T GF+ + +F++V + N VA+ Sbjct: 2 SFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S G TR G FK + +V ++ Sbjct: 62 SQVAQQFHQGSLQFTNNSLDMAINGGGFFVTSSEIGSQDHSFTRAGAFKFDSNNYMVDSA 121 Query: 119 GK----YPVLDMAS---------VPIQIPQKDEI 139 G +PV + P+QIP Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTTEPVQIPDTAGS 155 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 VG G I G + A + L QG + N+ ++ P Sbjct: 340 TNVEVGADGLINASYSNGSTVPLARVALVRFANEQGLSQAGNTSWKASLDSGPALAGEAN 399 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|20807880|ref|NP_623051.1| flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|254478868|ref|ZP_05092232.1| Flagellar basal body protein FlgE [Carboxydibrachium pacificum DSM 12653] gi|20516445|gb|AAM24655.1| Flagellar basal body and hook proteins [Thermoanaerobacter tengcongensis MB4] gi|214035181|gb|EEB75891.1| Flagellar basal body protein FlgE [Carboxydibrachium pacificum DSM 12653] Length = 415 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ A + RL + +N++N +TVG++ ++ F E+ N Sbjct: 1 MLRSMYSAISGLQAHQARLDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S G T D +++G+ +F + + I+ TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGESILYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G LV+ G Y VL Sbjct: 121 DSNGDLVTPDG-YKVLG 136 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 + N+ + G +S + +VI + L G + N+ + P+ +G Sbjct: 301 QSINIDKYGVVSGIYSNGRRQVIGQIALADFQNPMGLEKVGNTMFINTVNSGEPMIGAAG 360 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN N E MI + F + +I +++ + + + Sbjct: 361 SGTRGSINPGTLEMSNVNLANEFVDMITTQRGFQANAKVITVSDEMLQDLVN 412 >gi|196045154|ref|ZP_03112387.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB108] gi|196024156|gb|EDX62830.1| putative flagellar basal-body rod protein [Bacillus cereus 03BB108] Length = 249 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 91/249 (36%), Gaps = 21/249 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASG 62 + QR++ ++N++N T+GF+ + + + S V Sbjct: 2 GMMNYMQRINVHSNNVANAQTIGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFKVTDDGSLVS 116 +++ G+ T + DF L+ D +F LTRDG F + D L + Sbjct: 62 ATHVNLVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRR 172 SG + V+ + I+IP+ + V G ++Q + + ++R Sbjct: 121 TSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLIQR 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 EN + VK LE+SN + EM ++ + ++ ++ +K Sbjct: 179 ENKSFTLAEGNIADLPNGTGLVKNHMLENSNVDMTKEMADLMTDQRMISASQRVMTSFDK 238 Query: 233 SMLEAIRNI 241 + I Sbjct: 239 IYEKEANEI 247 >gi|262273529|ref|ZP_06051343.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] gi|262222507|gb|EEY73818.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] Length = 401 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S NIGL+ A +++T++ N+SN TVG+++ + +F +V + V++ + Sbjct: 2 SINIGLSGLRATSDQINTISHNISNVGTVGYKSSRTEFQDVYAPQFGGGEFGGVEVSNVR 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + S G+ STG D A+ G+ +F ++ + TR+G F + DG LV+A G Sbjct: 62 Q--SFTSGAATSTGRNSDLAINGEGFFMVQQNGQRMYTRNGIFNLDSDGYLVTADG 115 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 12/119 (10%) Query: 134 PQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P K + G + + ++ + L +G + + + Sbjct: 284 PGKLAGWYFDADGSVYARYSNGKTQLQGQLVLARFPNQEGLQQAGGTRWTESFSSGTALF 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P G ++ G E SN + EM ++ + + I +++ + +N+ Sbjct: 344 GQPGTGQFGA-LRVGAYESSNVDLTEEMVSLMSAQSNYQANAKTIQASQEMVQILFQNM 401 >gi|170722892|ref|YP_001750580.1| flagellar hook protein FlgE [Pseudomonas putida W619] gi|169760895|gb|ACA74211.1| flagellar basal body FlaE domain protein [Pseudomonas putida W619] Length = 451 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV------VGAIKNDIDQKIS 57 SFNIGL+ A ++L +N++N +T GF++ + +F++V +G KN + + Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 A +++ G +TG LD ++G +F L + TR G F+ + +V++ Sbjct: 62 LAAISQQF---SQGDVNNTGNVLDMGIQGQGFFVLSDNGSRVYTRAGAFQADKNNFVVTS 118 Query: 118 SG 119 G Sbjct: 119 DG 120 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG 191 ++ G + +Q+ + I + L S QG + + + P D Sbjct: 338 SSLSIDSTGVLFASFSNQQSRAIGQVALASFANEQGLQQIGGTRWTETFSSGLPGIDEPK 397 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V+ LE SN N E+ ++I + + I M I+ Sbjct: 398 TGTLGSVESNALEASNVNLTQELVELIKAQSNYQANAKTISTESTIMQTIIQ 449 >gi|46579854|ref|YP_010662.1| flagellar hook protein FlgE [Desulfovibrio vulgaris str. Hildenborough] gi|120602680|ref|YP_967080.1| hypothetical protein Dvul_1636 [Desulfovibrio vulgaris DP4] gi|46449270|gb|AAS95921.1| flagellar hook protein FlgE [Desulfovibrio vulgaris str. Hildenborough] gi|120562909|gb|ABM28653.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] gi|311234145|gb|ADP86999.1| flagellar hook-basal body protein [Desulfovibrio vulgaris RCH1] Length = 564 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVA 60 S G++ LA +R++ + +N++N +TVGF+ ++ F + + + Q V+ Sbjct: 6 SMWTGVSGLLAHGERMNVLGNNIANVNTVGFKGSRMDFEDFLNQDTYSAAGVTQVGRGVS 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSAS 118 G + G+F +T D A++G +F++ + TR G F+ DG LV Sbjct: 66 IGAIFGDYSQGAFQTTNESTDLAIQGRGFFSVKPKGTEDTYYTRAGNFRFDADGYLVDPH 125 Query: 119 GK 120 G Sbjct: 126 GY 127 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG 191 + V G + G + + L Q R + PL + Sbjct: 450 QNITVDRDGIMQGKYSNGVTLDLYQVTLVDFTSKQNLRREGGNLFSGTRDSGDPLPGPAN 509 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + LE SN + E +MI + F S + +I + +MLE + N+ Sbjct: 510 SNGLGAISSNSLEQSNVDLAREFVEMITTQRGFQSNSKVITTTD-TMLEVVVNM 562 >gi|148269402|ref|YP_001243862.1| hypothetical protein Tpet_0257 [Thermotoga petrophila RKU-1] gi|147734946|gb|ABQ46286.1| protein of unknown function DUF1078 domain protein [Thermotoga petrophila RKU-1] Length = 623 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 18/195 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G+ + + V +N+SN +TVGF+ +V F ++ +N Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRSPQENVG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G + S GSF +TG + D A++GD +F + TR G F + Sbjct: 61 GTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGSSYYYTRAGAFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 +G+L+ S Y V + +Q P+ E + + I G ++ + G+ Sbjct: 121 DSNGNLIQTSTGYKVQGWTA--VQDPETGERY-IDTNKPI---GDLVISAGMTMPAKKTS 174 Query: 169 FVRRENSGISPNIPP 183 VR E + S P Sbjct: 175 NVRFEGNLNSKLGPG 189 Score = 78.5 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 E F + E+GEI V+ + L + G NS + P Sbjct: 509 ESFAINEQGEIIGTFSNGLTDVLGQIALAVFNNPSGLSEVGNSLYVVSANSGVPKIGAPG 568 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+ + G LE SN + E +MI + F + +I ++ + E + Sbjct: 569 SGGRGI-LIPGALEMSNVDLAEEFTKMIVAQRGFQANARVITTADQILNELVN 620 >gi|70731823|ref|YP_261565.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf-5] gi|68346122|gb|AAY93728.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf-5] Length = 447 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--SFVAS 61 SFNIGL+ A ++L +N++N T GF++ + +F++V A K ++ + V Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADVYSATKLGSGTQVIGNGVRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G +TG LD ++G +F L + + TR G FK +G + ++ G Sbjct: 62 ANVSQQFTNGDINNTGNVLDMGIQGQGFFVLSTNGSLTYTRAGTFKTDKEGYITNSDGTA 121 Query: 122 PVLDMA 127 + A Sbjct: 122 RLQGYA 127 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 10/115 (8%) Query: 135 QKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLED 188 + + G + K I + L S QG + P D Sbjct: 331 GQISSLTIDGTGVMLANFSNEQTKPIGQISLASFTNEQGLQPVGGTQWKETYSSGIPGYD 390 Query: 189 LSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE+SN N E+ +I + + I M I+ Sbjct: 391 APKTGTLGAIQSNSLEESNVNLTNELVNLIKAQSNYQANAKTISTQSTIMQTIIQ 445 >gi|289578425|ref|YP_003477052.1| fagellar hook-basal body protein [Thermoanaerobacter italicus Ab9] gi|289528138|gb|ADD02490.1| fagellar hook-basal body protein [Thermoanaerobacter italicus Ab9] Length = 413 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ A + R+ + +N++N +TVG++ ++ F E+ N Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S G T D +++G+ +F + + + TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSNGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 G LV+ G Y VL Sbjct: 121 DSQGDLVTPDG-YKVLG 136 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + ++I + + G + N+ + P+ +G Sbjct: 299 ESINIDKYGVVSGIYSNGRKQIIGQIAIADFQNPMGLEKVGNTMFINTVNSGEPMIGAAG 358 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + +I +++ + + + Sbjct: 359 TGTRGSINPGTLEMSNVDLANEFADMIVTQRGFQANAKIITASDEMLQDLVN 410 >gi|183220587|ref|YP_001838583.1| flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910695|ref|YP_001962250.1| flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775371|gb|ABZ93672.1| Endoflagellar hook protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779009|gb|ABZ97307.1| Flagellar hook protein FlgE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 464 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 12/140 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ + +N+SN +T GF+T +V F +++ Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELQGASEPNERIG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G + G+ +TG D A+ G+ +F ++ TR G F V Sbjct: 61 GTNPKQVGLGSLIAAIDKIMTQGALQTTGKNTDLAVSGEGFFVVKDGDKQFYTRAGAFNV 120 Query: 109 TDDGSLVSASGKYPVLDMAS 128 +G V+ + V S Sbjct: 121 DKNGFYVNPANGLKVQGWNS 140 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 E F++ G ++ G + +A + L + G + ++ S ++ Sbjct: 350 ESFSIDNTGTVTGVFSNGVRQPLARVALANFTNPAGLNKEGDTMYSFSLNSGEANIGEAG 409 Query: 193 T-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + + G LE SN + + MI + F + + I +++ + E + Sbjct: 410 SQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTIVTSDQMIQEVL 460 >gi|116328901|ref|YP_798621.1| flagellar hook protein FlgE [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330492|ref|YP_800210.1| flagellar hook protein FlgE [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121645|gb|ABJ79688.1| Endoflagellar hook protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124181|gb|ABJ75452.1| Endoflagellar hook protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 464 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 12/139 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N+SN +T GF+T +V F +++ + + Sbjct: 1 MMRSLYSGVSGLKNHQVRMDVIGNNISNVNTHGFKTERVTFQDMISQELRGASEPKENIG 60 Query: 61 SGKEYL------------SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 GS +TG D A+ G+ +F ++ TR G F + Sbjct: 61 GVNPQQVGLGSLIAAIDKIMTQGSLQTTGKNTDVAMSGEGFFIVKDGDKQFYTRAGAFNL 120 Query: 109 TDDGSLVSASGKYPVLDMA 127 +G V+ + V Sbjct: 121 DKNGYYVNPANGLKVQGWN 139 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E F++ G I+ G + +A + + G + ++ + ++ P +G Sbjct: 350 ESFSIDNSGTITGVFSNGVRQPLARIATAVFNNPAGLDKAGDTMFAYSMNSGEPNIGEAG 409 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V + G LE SN + + MI + F + + I +++ + E + Sbjct: 410 VQGRGKINAGLLEMSNVDLSDQFTDMIVTQRGFQANSRTITTSDQMIQEVL 460 >gi|167040321|ref|YP_001663306.1| hypothetical protein Teth514_1684 [Thermoanaerobacter sp. X514] gi|300914405|ref|ZP_07131721.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307724359|ref|YP_003904110.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] gi|166854561|gb|ABY92970.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter sp. X514] gi|300889340|gb|EFK84486.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X561] gi|307581420|gb|ADN54819.1| fagellar hook-basal body protein [Thermoanaerobacter sp. X513] Length = 417 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ A + R+ + +N++N +TVG++ ++ F E+ N Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S G T D +++G+ +F + + TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSKGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 G LV+ G Y VL Sbjct: 121 DSQGDLVTPDG-YKVLG 136 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + +VI + + G + N+ + P+ +G Sbjct: 303 ESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTMFINTVNSGEPMIGAAG 362 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + +I +++ + + + Sbjct: 363 TDTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVN 414 >gi|317129200|ref|YP_004095482.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] gi|315474148|gb|ADU30751.1| flagellar hook-basal body protein [Bacillus cellulosilyticus DSM 2522] Length = 397 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 16/142 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + G+ + + +L V +N++N +T GF+ +V F ++V + Sbjct: 1 MIRAMYAGIGGMKSFQTKLDVVGNNIANVNTSGFKKGRVTFQDLVSQQMSGAATPTDNRG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G GS +TG +LD + GD +F + +R G F + Sbjct: 61 GINPMQVGLGTSMGSIDTIHTQGSLQTTGRDLDIGITGDGFFIVNDGGQSYYSRAGNFYL 120 Query: 109 TDDGSLVSASG----KYPVLDM 126 ++G LV+A+G Y V+D Sbjct: 121 DENGDLVNANGLRVQGYSVVDG 142 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 10/118 (8%) Query: 132 QIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGI----SPNIP 182 + E +++ + GEI + + +++ + L + + G + N+ + P Sbjct: 277 NVDGTLESYSISQAGEIMGVFSNGEVRLLGQIALATFNNPGGLSKSGNNLYMVSNNSGNP 336 Query: 183 PTPLEDLSGVTVKRGF-LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L G + G LE SN + E +MI + F + T +I +++ + E + Sbjct: 337 QVGLAGDGGRGMLTGASLEMSNVDLSEEFTEMIVAQRGFQANTRMITTSDEILQELVN 394 >gi|296502373|ref|YP_003664073.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis BMB171] gi|296323425|gb|ADH06353.1| flagellar basal body rod protein FlgG [Bacillus thuringiensis BMB171] Length = 246 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 19/246 (7%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASGKE 64 + QR++ ++N++N T GF+ + + + S V Sbjct: 1 MNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAAT 60 Query: 65 YLSKEVGSFISTGTELDFALEGDA-----WFALESPRGIILTRDGRFKVTDDGSLVSASG 119 +++ G+ T + DF L+ A +F LTRDG F + D L ++SG Sbjct: 61 HVNLVQGNIQMTNSATDFFLDDGAAGTTSFFVTSKNDETFLTRDGSFTLNSDRYLQTSSG 120 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRRENS 175 + V+ + I+IP+ + V G ++Q + + V+REN Sbjct: 121 AF-VMGENNERIRIPEGAK-VAVQADGTLYDEVTQNNIARLQTKTVDAETNARLVQRENK 178 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + VK LE+SN + EM ++ + + ++ +K Sbjct: 179 SFTLAEGNIANLPNGTGIVKNHMLENSNVDMTKEMADLMTDQKMIQASQRVMTSFDKIYE 238 Query: 236 EAIRNI 241 + I Sbjct: 239 KEANEI 244 >gi|171059412|ref|YP_001791761.1| hypothetical protein Lcho_2731 [Leptothrix cholodnii SP-6] gi|170776857|gb|ACB34996.1| protein of unknown function DUF1078 domain protein [Leptothrix cholodnii SP-6] Length = 501 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 10/172 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F GL+ A + L + +N++N +T G + + +F+++ + N+I + Sbjct: 3 FQQGLSGLNATSKNLEVIGNNVANANTYGTKASRAEFADMYASTINNIGTGNVGIGVQVA 62 Query: 65 YLSKE--VGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 +S++ GS +T LD A+ G +F ++ G + TR+G+FK+ +G +V+ SG+ Sbjct: 63 AVSQQFTQGSLSATDNPLDMAINGAGFFQVKDTAGNQLYTRNGQFKLDKEGFIVNNSGQK 122 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 + A+ D + G G + IA M V M R Sbjct: 123 LLGYPANA-------DGVVVPGAAGALQLPTAGIAPMATDEVKMEMNLDSRG 167 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIP 182 P + NV G I+ + K + + + QG + Sbjct: 384 PGEMSSLNVESNGIITARYSNGLTKSAGQIEVANFRNPQGLQAVGGNAWASTFASGSATV 443 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TP G ++ G LEDSN + E+ MI + + + I + + + Sbjct: 444 GTPDSGNFG-QLQSGSLEDSNVDLTAELVNMITAQRVYQANAQTIKTQDSVLQTLVN 499 >gi|304409978|ref|ZP_07391597.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|307302309|ref|ZP_07582067.1| fagellar hook-basal body protein [Shewanella baltica BA175] gi|304351387|gb|EFM15786.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|306914347|gb|EFN44768.1| fagellar hook-basal body protein [Shewanella baltica BA175] Length = 453 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N VA+ Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNAKTAVGGGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + GS T LD A++G +F S G + TR G FKV + +V ++ Sbjct: 62 SQVAQQFHQGSLQLTSNSLDMAIKGGGFFVTSSELGTLDHSFTRAGAFKVDSNNYMVDSA 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEI 139 G Y PV + P+QIP Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTAKPVQIPDFAGS 155 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRREN-----SGISPNIPPTPLE 187 +G G I+ G +A + L QG + N S S Sbjct: 340 TNVEIGADGLITASYSNGSSVALARVALVRFANEQGLTQVGNTSWKASLASGQALAGEAN 399 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + ++ LE SN + E+ +I + F + + ++ N ++ + I I Sbjct: 400 SGTFGSISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTILQI 452 >gi|312126828|ref|YP_003991702.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] gi|311776847|gb|ADQ06333.1| fagellar hook-basal body protein [Caldicellulosiruptor hydrothermalis 108] Length = 486 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 41/208 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++A A + R+ + DN++N +TVGF++ +V F+ V ++ Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGR 105 ++ Q V+ ++ GS T D A+EGD +F + R TR G Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGRAPRFTRAGN 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPI-------------------QIPQKDEIFNVGEKG 146 F + G+LV+A+G VL P+ +P K + G Sbjct: 121 FSLDKMGNLVTATG-LNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATD-KISFDG 178 Query: 147 EISQK-----GKVIATMGLYSVDMSQGF 169 +S G++ L +V + Sbjct: 179 NLSADTKIYSGQITNYEDLLNVPADSKY 206 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + FNV G+I+ ++I + + + G R ++ + TP Sbjct: 372 QGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRIGDNLYINTVNSGDPEIGTPG 431 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ +G LE SN + E MI + + + +I +++ + + + Sbjct: 432 SGSRG-TISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVITASDELLQDLVN 483 >gi|308050372|ref|YP_003913938.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] gi|307632562|gb|ADN76864.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] Length = 468 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 18/166 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T ++N++N +T+GF+ + +F++V N + VA+ Sbjct: 2 SFNISLSGLNAAQKDLNTTSNNIANVNTIGFKESRAEFADVYNNSLFTNSKTNVGAGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 + G+ T LD A+ G+ +F S G TR G FK+ D +V + Sbjct: 62 AQIAQQFHQGALSFTNNALDLAINGNGFFVTNSELGGQDFSYTRAGAFKLNDSNFMVDSQ 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEIFNVGEKGEISQK 151 G Y PV SV P+QIPQ +S Sbjct: 122 GNYLMALPVNADGSVQSVSLSTTKPVQIPQTAGQPAATSDINMSMN 167 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG 191 V +G I+ + + + L QG + N+ N PL Sbjct: 355 TNVEVTAEGLINATYSNGTQQALGKVALARFSNEQGLTQIGNTSWKQSNDSGEPLVGEPN 414 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V +++ LE SN + E+ +I + F + + +D + + ++ Sbjct: 415 VGAFGSIRSAALEQSNVDLTTELVDLISAQRNFQANSRALDVSNQLSQNILQ 466 >gi|167037660|ref|YP_001665238.1| hypothetical protein Teth39_1248 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116075|ref|YP_004186234.1| flagellar hook-basal body protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856494|gb|ABY94902.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929166|gb|ADV79851.1| flagellar hook-basal body protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 417 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ A + R+ + +N++N +TVG++ ++ F E+ N Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S G T D +++G+ +F + + TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSKGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 G LV+ G Y VL Sbjct: 121 DSQGDLVTPDG-YKVLG 136 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + +VI + + G + N+ + P+ +G Sbjct: 303 ESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTMFINTVNSGEPMIGAAG 362 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + +I +++ + + + Sbjct: 363 TDTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVN 414 >gi|300870390|ref|YP_003785261.1| flagellar hook protein FlgE [Brachyspira pilosicoli 95/1000] gi|300688089|gb|ADK30760.1| flagellar hook protein, FlgE [Brachyspira pilosicoli 95/1000] Length = 441 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 12/141 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N+SN +T GF+ +V F +++ + Sbjct: 1 MMRSLFAGVSGLQNHQTRMDVVGNNISNVNTYGFKKGRVTFKDMISQSLSGAAKPQEDRG 60 Query: 53 ----DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 Q + G+ TG D A++G+ +F + TR+G F + Sbjct: 61 GINPQQVGLGMQVATIDTIHTQGALQVTGVNTDLAIQGEGFFIEKKGNSSYYTRNGAFSI 120 Query: 109 TDDGSLVSASGKYPVLDMASV 129 +G LV+ S Y V +V Sbjct: 121 DKNGYLVNPSNGYKVQGWNAV 141 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 E F+ + G+I+ K + + L + G + ++ + Sbjct: 327 EGFSFDDSGQITGVFTNGNRKTLGQVALAKFANAGGLEKAGDTLFVESNNSGAANIGVAA 386 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++K G LE SN + + MI + F + I ++ + E I Sbjct: 387 AEGRGSIKAGTLEMSNVDLSEQFTDMIVTQRGFQANARTITTADQLLQEVI 437 >gi|332284019|ref|YP_004415930.1| hypothetical protein PT7_0766 [Pusillimonas sp. T7-7] gi|330427972|gb|AEC19306.1| hypothetical protein PT7_0766 [Pusillimonas sp. T7-7] Length = 412 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 13/187 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A Q L + +N++N+ TVGF+ F++V + + + +++ + Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKAGTASFADVYASSRVGLGTQVASINQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKVTDDGSLVSASG-- 119 +GS +TG + D A++G F + P G ++ TR+G+F DG LV+A G Sbjct: 60 ---RFTIGSVSNTGNQFDMAIDGASGLFRVTDPSGSVLYTRNGQFSPDKDGYLVNAQGHR 116 Query: 120 --KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 Y VPI++P + G ++ K V A L + Sbjct: 117 LTGYEEGGTNLVPIRVPTGN--IAPAATGVVTSKVNVDANAPLAGGADPSATPPVPAATF 174 Query: 178 SPNIPPT 184 P +P T Sbjct: 175 DPAVPST 181 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSG- 191 + G I + + + ++ L QG + + + P+ G Sbjct: 300 SMAIAADGSIVASYTNGETQTMGSLVLVDFANVQGLQPVGGNAWVETSTSGQPILGRPGS 359 Query: 192 ---VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +K +E+SN + E+ MI + + + I ++ M I Sbjct: 360 NGMARIKGQAVEESNVDMSQELVNMIIAQRTYQANAQTIKTQDQIMQTLI 409 >gi|297617147|ref|YP_003702306.1| fagellar hook-basal body protein [Syntrophothermus lipocalidus DSM 12680] gi|297144984|gb|ADI01741.1| fagellar hook-basal body protein [Syntrophothermus lipocalidus DSM 12680] Length = 487 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + R+ + +N++N +TVG++ + F + Sbjct: 1 MMRSMYAGVSGLRTHQLRMDVIGNNIANVNTVGYKKSRAIFKDAFYQAIRGGSAPTGARG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V + GS +TG D A++G+ +F LES TR G F Sbjct: 61 GTNPQAIGLGVQLSSVDVIATPGSAQTTGKNTDLAIDGNGYFILESGGERYYTRAGAFDF 120 Query: 109 TDDGSLVSASGKYPVLD 125 G+ V ASG V+ Sbjct: 121 DVLGNYV-ASGGLHVMG 136 Score = 85.9 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 11/115 (9%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI------SPNIPPT 184 I I Q I V G I+ +A + L G + + + Sbjct: 375 ITIDQNGVILGVYSNG-ITDN---LARVALAVFQNPAGLLAKGGNLFQVSNNSGDPKVGA 430 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P E+ G + G LE SN + E MI + F + + +I +++ + E + Sbjct: 431 PGEEAMGA-ILPGSLEMSNVDLSEEFTDMIVTQRGFQANSRIITTSDEMLQELVN 484 >gi|302872562|ref|YP_003841198.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] gi|302575421|gb|ADL43212.1| fagellar hook-basal body protein [Caldicellulosiruptor obsidiansis OB47] Length = 489 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 18/148 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++A A + R+ + DN++N +TVGF++ +V F+ V ++ Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 ++ Q V+ ++ GS T D A+EGD +F + G TR G Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVV-GGDGKAPRFTRAG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQ 132 F + G+LV+A+G VL P+ Sbjct: 120 NFSLDKMGNLVTATG-LNVLGWMYDPVN 146 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 12/116 (10%) Query: 135 QKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------P 183 + FNV G+I+ ++I + + + G R ++ + Sbjct: 372 GNLQGFNVDASGKITGVYSNGLNQLIGQIAVATFANPAGLQRIGDNLYINTVNSGDPEIG 431 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TP G T+ +G LE SN + E MI + + + +I +++ + + + Sbjct: 432 TPGSGSRG-TISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVITASDELLQDLVN 486 >gi|78047586|ref|YP_363761.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036016|emb|CAJ23707.1| flagellar hook protein FlgE [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 407 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVWSNGAKMYTRAGNFQTDANGYVVNPQG 119 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNMWAESYTSGAARTGAPDTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|256750749|ref|ZP_05491634.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750332|gb|EEU63351.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 417 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ A + R+ + +N++N +TVG++ ++ F E+ N Sbjct: 1 MLRSMYSAVSGLKAHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S G T D +++G+ +F + + TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFTRGGAQRTDNPTDLSIDGNGFFIVSKGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 G LV+ G Y VL Sbjct: 121 DSQGDLVTPDG-YKVLG 136 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + +VI + + G + N+ + P+ +G Sbjct: 303 ESINIDKYGVVSGIYSNGRRQVIGQIAIADFQNPMGLEKVGNTMFINTVNSGEPMIGAAG 362 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + +I +++ + + + Sbjct: 363 TNTRGSINPGTLEMSNVDLANEFTDMIVTQRGFQANARVITASDEILQDLVN 414 >gi|325918877|ref|ZP_08180954.1| flagellar hook protein FlgE [Xanthomonas vesicatoria ATCC 35937] gi|325534914|gb|EGD06833.1| flagellar hook protein FlgE [Xanthomonas vesicatoria ATCC 35937] Length = 407 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 +FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 AFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +F + S + TR G F+ +G +++ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAVSGEGFFTVSSNGAKMYTRAGNFQTDSNGYVINPQG 119 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 296 ISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNMWAESYTSGAARTGAPDTS 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + + +I ++ I Sbjct: 356 DLG-QIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 405 >gi|315127353|ref|YP_004069356.1| flagellar hook protein E [Pseudoalteromonas sp. SM9913] gi|315015867|gb|ADT69205.1| flagellar hook protein E [Pseudoalteromonas sp. SM9913] Length = 440 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L A ++ L A+N++N +T GF+ + +F++V + + V + Sbjct: 2 SFNIALTGLAAAQKDLDVTANNIANVNTTGFKESRAEFADVYASSVFSAGKTKNGDGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 GS T LD A+ G+ +FA G TR G FK+ D +V A Sbjct: 62 TMVAQQFHQGSLQFTNNSLDLAITGEGYFATSQDLGAQDFTYTRAGAFKLNKDNFVVDAK 121 Query: 119 GKY 121 G + Sbjct: 122 GNF 124 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG---ISPNIPPTPLEDLSG 191 ++G G++ + + + SQG + ++ + P E SG Sbjct: 329 IDIGTDGKVVASYSNGDSTYLGQVAMVRFSNSQGLQQVGDTSWKKSLTSGEPIAGEPGSG 388 Query: 192 V--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN N E+ +I + F + + ++ N ++ Sbjct: 389 TLGNINSSALEQSNVNLTNELVDLISAQRNFQANSRALEVNSTIQQNILQ 438 >gi|312621577|ref|YP_004023190.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202044|gb|ADQ45371.1| fagellar hook-basal body protein [Caldicellulosiruptor kronotskyensis 2002] Length = 488 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 38/189 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++A A + R+ + DN++N +TVGF++ +V F+ V ++ Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 ++ Q V+ ++ GS T D A+EGD +F + G TR G Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVV-GGDGKAPRFTRAG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPI-------------------QIPQKDEIFNVGEK 145 F + G+LV+A+G VL P+ +P K + Sbjct: 120 NFSLDKMGNLVTATG-LNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATD-KISFD 177 Query: 146 GEISQKGKV 154 G +S K+ Sbjct: 178 GNLSADTKI 186 Score = 82.4 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + FNV G+I+ ++I + + + G R ++ + TP Sbjct: 374 QGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRIGDNLYINTVNSGDPEIGTPG 433 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ +G LE SN + E MI + + + +I +++ + + + Sbjct: 434 SGSRG-TISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVITASDELLQDLVN 485 >gi|170288059|ref|YP_001738297.1| hypothetical protein TRQ2_0255 [Thermotoga sp. RQ2] gi|170175562|gb|ACB08614.1| protein of unknown function DUF1078 domain protein [Thermotoga sp. RQ2] Length = 750 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 21/207 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G+ + + V +N+SN +TVGF+ +V F ++ +N Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRSSQENVG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G + S GSF +TG + D A++GD +F + TR G F + Sbjct: 61 GTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGNAYYYTRAGAFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 +G+L+ S Y V + +Q P+ E + + I G ++ + G+ Sbjct: 121 DSNGNLIQTSTGYKVQGWTA--VQDPETGERY-IDTNRPI---GDLVISAGMTMPAKKTS 174 Query: 169 FVRRE---NSGISPNIPPTPLEDLSGV 192 VR E NS + P L D SGV Sbjct: 175 NVRFEGNLNSNVGPGSFTITLTDDSGV 201 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 E F + E+GEI V+ + L + G NS + P Sbjct: 636 ESFAINEQGEIIGTFSNGLTDVLGQIALAVFNNPSGLSEVGNSLYVVSANSGVPKIGAPG 695 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+ + G LE SN + E +MI + F + +I ++ + E + Sbjct: 696 SGGRGI-LIPGALEMSNVDLAEEFTKMIVAQRGFQANARVITTADQILNELVN 747 >gi|302392387|ref|YP_003828207.1| flagellar hook-basal body protein [Acetohalobium arabaticum DSM 5501] gi|302204464|gb|ADL13142.1| flagellar hook-basal body protein [Acetohalobium arabaticum DSM 5501] Length = 557 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 26/165 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------------GAI 48 M S G++ A + ++ + +N+SN +T G++ +V F E++ G Sbjct: 1 MMRSMYAGVSGLKAHQTKMDVIGNNISNVNTTGYKGSRVTFKEMLNQTMEGASAPQDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q V+ G + E G+ STG D AL+G+ +F + + TR G Sbjct: 61 GTNPQQIGLGVSLGSIDNNMETGNLQSTGKMTDVALQGEGFFIVNDGTKNLYTRAGNLSF 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 ++G L ++S V + E G I + Sbjct: 121 DEEGYLTNSSNGNRVQG--------------WTADEDGTIDKTNA 151 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISP-NIPPTPLEDLSG 191 E F + G I+ K +A +G+ + G + ++ N P +G Sbjct: 443 ESFTIDGSGTITGSYDNGYNKALAKIGVATFSNPAGLSKEGDTLFDTSNNSGDPQVGQAG 502 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + G LE SN + + +MI + F S + I +++ + + Sbjct: 503 IGGRGMIAPGSLEMSNVDLARQFTEMITAQRGFQSNSKAISTSDQMLQTLVN 554 >gi|146281771|ref|YP_001171924.1| flagellar hook protein FlgE [Pseudomonas stutzeri A1501] gi|145569976|gb|ABP79082.1| flagellar hook protein FlgE [Pseudomonas stutzeri A1501] Length = 438 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASG 62 FN+ L+ A L+ +N++N T GF+ + +F+++ + + + S V + Sbjct: 3 FNVALSGLNAASTDLNVTGNNIANVGTTGFKASRAEFADLYATSMLGSGGNAVGSGVTTA 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ +TG LD A+ G+ +F + + ++ TR G FK D+G ++++ G Sbjct: 63 DIAQQFTQGNITNTGNSLDLAISGNGYFMVSNNGSMLYTRAGAFKTDDEGYVINSEGY 120 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNANSM 207 KVI + L + SQG + + P G +++ G LEDSN + Sbjct: 345 KVIGQVVLANFTNSQGLASVGGTAWAQTLASGEPAIGTPGSGTLGSLQSGALEDSNVDLT 404 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ +I + + + ++ I Sbjct: 405 AQLVNLIVAQRNYQANAKTVETESAIAQTIIN 436 >gi|158320521|ref|YP_001513028.1| hypothetical protein Clos_1488 [Alkaliphilus oremlandii OhILAs] gi|158140720|gb|ABW19032.1| protein of unknown function DUF1078 domain protein [Alkaliphilus oremlandii OhILAs] Length = 448 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 16/140 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S +++ A + ++ + +N++N +TVGF+ +V F EV + Sbjct: 1 MMRSMYSAVSSLKAHQLKMDVIGNNIANVNTVGFKGTRVTFQEVFSQTLRGAGRAQEGGR 60 Query: 61 SGKEY-------------LSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDG 104 G GS STG D + G+ +F + +G TR G Sbjct: 61 GGTNPQQVGLGINVNSMDTFHTRGSVESTGYNTDLMINGEGFFVVSDTQGGLQKSYTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVL 124 F + +G+L++ G Y + Sbjct: 121 AFGLDANGNLITPDGYYVLG 140 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + F + GEI +++ +GL + G ++ + Sbjct: 334 DDFTISTTGEIEANFTNGSRQILGRVGLANFKNPAGLLKTGGNMYRETSNSGEVMFGYAG 393 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + G +E SN + E MI + F + + +I +++ + E + Sbjct: 394 TGGFGA-LNPGAIEMSNVDISREFTDMITTQRGFQANSRIITTSDEMLQEIVN 445 >gi|222824502|ref|YP_002576076.1| flagellar hook protein FlgE [Campylobacter lari RM2100] gi|222539723|gb|ACM64824.1| flagellar hook protein FlgE [Campylobacter lari RM2100] Length = 541 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 10/193 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----DIDQKI 56 M T+F G+ + + A N+SN +TVGF+ V F +V + + Q Sbjct: 1 MFTAFYNGVNGVKSQSYGIDNTAHNISNVNTVGFKYSDVAFKDVFYSTVTTQSYNKGQTG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +G E G ++T E D A+ G +F + + GI TR+G F+ +G+LV Sbjct: 61 YGSVAGATNDVFEQGPLVATDHEFDVAIAGKGFFGVSNGNGIYYTRNGAFRPDANGNLVD 120 Query: 117 ASGKYPV--LDMASVPIQIPQKDEIF---NVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 A+G Y + ++ + IQ+ + +G+K + GK + V +QG + Sbjct: 121 ANGNYVLGTMNPSLQEIQLSDRVSNIFGQQLGQKVTTAITGKPNENFQIGGV-NTQGPIS 179 Query: 172 RENSGISPNIPPT 184 + P P Sbjct: 180 VPKNLYLPPQPTQ 192 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPP-------TP 185 + + G I G+ I A + L++ QG + + Sbjct: 425 NNYAINTDGTIIATFTNGEQIPMAKLALFNFTNEQGLEKLGENLYGQTGNSGNPTFLLDA 484 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + S T K +LE SN + +I L + ++S + I ++ + +AI Sbjct: 485 NGNFSTATFKGSYLEQSNVDLSVAFTNLITLQKAYDSSSKSITTADQMIQKAIN 538 >gi|303240279|ref|ZP_07326798.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] gi|302592189|gb|EFL61918.1| fagellar hook-basal body protein [Acetivibrio cellulolyticus CD2] Length = 439 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 16/135 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ A + ++ + +N++N +TV +++ +V F EV + Sbjct: 1 MMRSMFSGVSGLRAHQTKMDVIGNNVANVNTVAYKSGRVTFQEVFSQTIKGAGAPDTATG 60 Query: 61 SGKEY--------------LSKEVGSFISTGTELDFALEGDAWFALE--SPRGIILTRDG 104 G GS T D A+EGD +F ++ S TR G Sbjct: 61 RGGTNPMQVGLGIGVSSVDTITTRGSLQRTDNPTDLAIEGDGFFIVKGGSADTYRFTRAG 120 Query: 105 RFKVTDDGSLVSASG 119 F + G+LV+ SG Sbjct: 121 NFGIDKTGNLVTGSG 135 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 11/112 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV- 192 F++G G I+ + + + + L S + G + N+ P + Sbjct: 325 SFSIGSDGIITGIYSNGQQQPLGLIALASFENPAGLQKSGNNMFIPTTNSGDFKKGVKAG 384 Query: 193 -----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E MI + F + + +I +++ + E + Sbjct: 385 SEGVGTLNPGTLEMSNVDLSTEFTDMIVTQRGFQANSRIITTSDEMLQELVN 436 >gi|241203124|ref|YP_002974220.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857014|gb|ACS54681.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 432 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 16/188 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTVADN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLP-SSGGNYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F ++ P G +LTR G F D+G+LV+A+G Sbjct: 65 RQAVSDQGDISYTTSSTDLAISGDGFFIVQGPDGTPVLTRAGDFTKDDEGNLVNAAGFML 124 Query: 123 VL---DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + D S + + D + V + GL ++ + G + + Sbjct: 125 MGYSYDSGSPAVVVNGFDGLVPVN-----------VNQDGLTAIASTSGIFKGNLDSNAK 173 Query: 180 NIPPTPLE 187 P P Sbjct: 174 IAPVAPAT 181 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 34/170 (20%) Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIP----------------------QKDEIF 140 G +G L + V + I + + Sbjct: 261 TGTLSFDANGKLTAGGAVNIVDPVTGQTIAMDFSAFTQLGADFSGTGTPNGQAATPVKDV 320 Query: 141 NVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRENSGISPNIPPTPLEDL 189 V G + K K + + L +V G V N + P + Sbjct: 321 TVDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSANGQSGVTVTGFPQTNG 380 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+K G LE SN + E+ +MI + + + + + M + Sbjct: 381 LG-TIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVN 429 >gi|284989548|ref|YP_003408102.1| flagellar hook-basal body protein [Geodermatophilus obscurus DSM 43160] gi|284062793|gb|ADB73731.1| flagellar hook-basal body protein [Geodermatophilus obscurus DSM 43160] Length = 408 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 12/133 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S N ++ A + +L +N++N +TVG++ + F + + + + + Sbjct: 1 MLRSMNSAISGLRAHQTKLDVTGNNIANVNTVGYKASQTVFEDTLSQVVRNGSAPTAQAG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V + E GS +TG DF + GD +F ++ + TR G F Sbjct: 61 GTNPAQVGLGVKVAGITTNFEQGSAQNTGRSTDFMISGDGFFITQAGNEQLYTRAGSFSY 120 Query: 109 TDDGSLVSASGKY 121 G+LV+ G Sbjct: 121 DGAGNLVTPDGAL 133 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGIS-PNIPPTPL----E 187 + ++ G + + I + L + G + NS + P Sbjct: 294 QSISLSGDGTVMGVYSNNLREPIGKLALATFANPGGLAKAGNSSFRVGDNSGQPAIGEPG 353 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E +I + F + + +I +++ + + + Sbjct: 354 GGGRGSLVAGALEMSNVDLAEEFTGLIVAQRGFQANSRVISSSDEVLQDLVN 405 >gi|222530130|ref|YP_002574012.1| hypothetical protein Athe_2164 [Caldicellulosiruptor bescii DSM 6725] gi|222456977|gb|ACM61239.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 488 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 38/189 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++A A + R+ + DN++N +TVGF++ +V F+ V ++ Sbjct: 1 MMRSMFSSISALRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVLKSASAPDTASG 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 ++ Q V+ ++ GS T D A+EGD +F + G TR G Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVV-GGDGKAPRFTRAG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPI-------------------QIPQKDEIFNVGEK 145 F + G+LV+A+G VL P+ +P K + Sbjct: 120 NFSLDKMGNLVTATG-LNVLGWMYDPVNNQIDTTKSPSKINILAFPTLPPKATD-KISFD 177 Query: 146 GEISQKGKV 154 G +S K+ Sbjct: 178 GNLSADTKI 186 Score = 82.0 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + FNV G+I+ ++I + + + G R ++ + TP Sbjct: 374 QGFNVDASGKITGVYSNGLNQLIGQIAIATFANPAGLQRIGDNLYINTVNSGDPEIGTPG 433 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ +G LE SN + E MI + + + +I +++ + + + Sbjct: 434 SGSRG-TISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVITASDELLQDLVN 485 >gi|225850267|ref|YP_002730501.1| flagellar basal body and hook protein FlgE [Persephonella marina EX-H1] gi|225644919|gb|ACO03105.1| flagellar basal body and hook protein FlgE [Persephonella marina EX-H1] Length = 540 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 8/153 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M SF G A A + LS ++DN++N +T+GF+ +V F +++ + Sbjct: 1 MIQSFYTGNAGLNANKNWLSVISDNIANVNTIGFKAERVNFEDLISSSLTTFANNSPKNM 60 Query: 56 --ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDG 112 G G+ ++T T D AL+G+ +F + + TR G+F+ +G Sbjct: 61 EIGGGSFVGSTTKDFSQGALMNTNTPTDLALDGEGFFMVRDAQDVTYYTRAGQFRTDANG 120 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 L++ +G + I N+ Sbjct: 121 DLINLNGMKLLGWQLDDAGNIAGAIGAINIPND 153 Score = 78.2 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 8/109 (7%) Query: 139 IFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDLSGV 192 +V E G + G+V A + + + + + +R+ N+ PN TP+ GV Sbjct: 429 SVSVSEDGLVRGVYSNGQVKDWARIAIATFNDKEILIRKGNNLFLPNSQTYTPIIVPGGV 488 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ GFLE SN + E +I + + + I +++ + E + Sbjct: 489 ISKIRGGFLELSNVDISREFINLITAQRAYQANARTITTSDQVLQETMN 537 >gi|86356330|ref|YP_468222.1| flagellar hook protein FlgE [Rhizobium etli CFN 42] gi|86280432|gb|ABC89495.1| flagellar hook protein [Rhizobium etli CFN 42] Length = 434 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLP-SSGGNYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F ++ P G +LTR G F+ D+G+LV+A+G Sbjct: 65 RQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAAGFQL 124 Query: 123 VL---DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + D + + + D + V + GL ++ + G + + Sbjct: 125 MGYSYDSGAPAVVVNGFDGLVPVN-----------VNQEGLTAIASTSGVFKGNLDSGAN 173 Query: 180 NIPPTPLE 187 P P Sbjct: 174 IAPVAPAT 181 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 36/171 (21%) Query: 103 DGRFKVTDDGSLVSASGKYPVLDM-----------------------ASVPIQIPQKDEI 139 G +G +++ G P+ D + Q + Sbjct: 263 SGNLTFDRNGKMLTG-GALPIADTKNALSINMDLSGFTQLGAAFAGTGTPNGQAASPVKD 321 Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRENSGISPNIPPTPLED 188 + G + K K + + L +V G V N + P + Sbjct: 322 VTIDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSANGQSGVTVTGFPQTN 381 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+K G LE SN + E+ +MI + + + + + M + Sbjct: 382 GLG-TIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 431 >gi|160939658|ref|ZP_02087006.1| hypothetical protein CLOBOL_04550 [Clostridium bolteae ATCC BAA-613] gi|158437449|gb|EDP15213.1| hypothetical protein CLOBOL_04550 [Clostridium bolteae ATCC BAA-613] Length = 550 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 21/208 (10%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDIDQKISFVASGK 63 A + +L + +N++N +T GF++ + +F +V N S V G Sbjct: 1 MQAHQTKLDVIGNNIANVNTYGFKSSRARFQDVYYQTLQSATGGDNNKGGTNASQVGYGA 60 Query: 64 E--YLSKEVG--SFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD-GSLVSA 117 + + +G + STG +D A+ G+ +F + G I TR G ++ ++ G+LV A Sbjct: 61 QLAGVDLNMGRSALQSTGRPMDVAITGEGFFQVMDSDGNIFYTRAGNLQLDNNSGNLVDA 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNV---GEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 +G Y VL + P+ + ++ G+ S + I G+ SQ N Sbjct: 121 NG-YTVLGVTGDPLGKAAGADKIHLSIPGKNNAQSANSQTIN--GIEYTITSQNTTSAAN 177 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDS 202 IS + T L D + + VK G L+DS Sbjct: 178 VTISFRLDDT-LPDGADIVVKSGELKDS 204 Score = 68.5 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK----GKV-IATMGLYSVDMSQGFVRRENSGISPNIPP------TPLED 188 + G I GK+ I + L + D G NS E+ Sbjct: 438 VTILSNGIIEATHPDLGKIQIGRIDLVTFDNPYGLEGVGNSYFKTTANSGDPKLCQAGEN 497 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G +K LE SN + E MI + F + + +I ++ + E + Sbjct: 498 GTGA-LKTSSLEMSNVDISTEFADMIVTQRGFQANSRIITVSDSILEELVN 547 >gi|2494530|sp|Q56326|FLGE_TREPH RecName: Full=Flagellar hook protein flgE gi|439981|gb|AAA73467.1| flagellar hook polypeptide [Treponema phagedenis] Length = 463 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 12/144 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M S G++ + R+ + +N++N +T GF+ +V F +++ + + Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVG 60 Query: 56 -------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G+ +TG D A++G+ +F L+ T G F V Sbjct: 61 GVNPKEVGLGVMVASIDTVHTQGALQTTGINTDIAIQGNGFFILKDGEKSFYTTAGAFGV 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQ 132 DG+LV+ + V + I+ Sbjct: 121 DRDGTLVNPANGMRVQGWMAEDIE 144 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSG 191 E F + + G I+ + I + L G + EN+ I N +SG Sbjct: 349 ENFKIDQSGIITGVYSNGASREIGQLALAGFANQGGLEKAGENTYIQSNNSGIANITVSG 408 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V + G LE SN + + MI + F + I ++ +MLE + N+ Sbjct: 409 VMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSD-TMLETVLNL 461 >gi|239995125|ref|ZP_04715649.1| flagellar hook protein FlgE [Alteromonas macleodii ATCC 27126] Length = 461 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 10/167 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L A+N++N +TVGF+ + +F +V A + + V + Sbjct: 2 SFNIALSGVSAAQKDLDVTANNIANVNTVGFKESRAEFGDVYAASLLSGGKTKVGDGVLT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 + GS T T LD A+ G+ +FA + R TR G+FK+ D +V+++ Sbjct: 62 QEVAQQFSQGSLQFTNTSLDLAITGNGFFATVPEITSRDFSFTRAGQFKLDSDNFVVNSN 121 Query: 119 G----KYPVLDMASVPIQIPQKDEIFNV-GEKGEISQKGKVIATMGL 160 G +PV + E + G +Q +V M L Sbjct: 122 GDNLLGFPVNSDGTSASVALSTTEPVRIPDSSGSPAQTTEVDIRMNL 168 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 16/129 (12%) Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVR------R 172 L+ +P+ + ++G G + + I + L QG + + Sbjct: 337 LEQDGLPV---GRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFSNEQGLTQESSTQWK 393 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 E+ + G + LE +N N E+ MI + F + + ++ N Sbjct: 394 ESILSGEALAGEATTGTFG-EINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNN- 451 Query: 233 SMLEAIRNI 241 S+ + I NI Sbjct: 452 SLNQTILNI 460 >gi|237653583|ref|YP_002889897.1| flagellar basal body FlaE domain protein [Thauera sp. MZ1T] gi|237624830|gb|ACR01520.1| flagellar basal body FlaE domain protein [Thauera sp. MZ1T] Length = 450 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKISFVA 60 SF GL+ + L +++N++NT+T+GF+T FS+V A Q Sbjct: 2 SFQQGLSGLSVSSKALDIISNNVANTNTIGFKTGSAIFSDVFAASLTGSISGKQVGVGAT 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G + G+ +T LD A+ GD +F + G + TR+G+F++ +G + + +G Sbjct: 62 LGAVRQTFTQGNLTTTNNPLDLAINGDGFFVVSRENGPDVYTRNGQFELDKEGFIRTPTG 121 Query: 120 K 120 + Sbjct: 122 E 122 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 +VG G ++ + + +A + L + + N+ P E Sbjct: 339 VSVGRDGIVTGRYTNGETRELAQLALQTFRNPNALLSIGNNFWEATTESGLTAPSKAGEG 398 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++GV V G +ED+N E+ QMI + + + I ++ + + Sbjct: 399 VAGV-VSAGMIEDANVELTNELVQMIVQQRNYQANAQSIKAQDQVLQTLVN 448 >gi|297544701|ref|YP_003677003.1| fagellar hook-basal body protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842476|gb|ADH60992.1| fagellar hook-basal body protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 413 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ + + R+ + +N++N +TVG++ ++ F E+ N Sbjct: 1 MLRSMYSAVSGLKSHQARMDVIGNNIANVNTVGYKASRMTFKEIFSQTIKGASAPQGNGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S G T D +++G+ +F + + + TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFTSGGAQRTDNPTDLSIDGNGFFIVSNGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 G LV+ G Y VL Sbjct: 121 DSQGDLVTPDG-YKVLG 136 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + ++I + + G + N+ + P+ +G Sbjct: 299 ESINIDKYGVVSGIYSNGREQIIGQIAIADFQNPMGLEKVGNTMFINTVNSGEPMIGAAG 358 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + +I +++ + + + Sbjct: 359 TGTRGSINPGTLEMSNVDLANEFADMIVTQRGFQANAKIITASDEMLQDLVN 410 >gi|313624712|gb|EFR94667.1| flagellar hook protein FlgE [Listeria innocua FSL J1-023] Length = 411 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS STG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|284801027|ref|YP_003412892.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5578] gi|284994169|ref|YP_003415937.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5923] gi|284056589|gb|ADB67530.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5578] gi|284059636|gb|ADB70575.1| flagellar hook protein FlgE [Listeria monocytogenes 08-5923] Length = 411 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS STG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|315281358|ref|ZP_07869998.1| flagellar hook protein FlgE [Listeria marthii FSL S4-120] gi|313614997|gb|EFR88501.1| flagellar hook protein FlgE [Listeria marthii FSL S4-120] Length = 411 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS STG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYLPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|325274800|ref|ZP_08140828.1| flagellar hook protein FlgE [Pseudomonas sp. TJI-51] gi|324100068|gb|EGB97886.1| flagellar hook protein FlgE [Pseudomonas sp. TJI-51] Length = 440 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A + L+ +N++N T GF++ + +F++ S + +G Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKSVIGTGV 61 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + G+ +TG LD A++G+ +FAL I TR G F +G +V+A G Sbjct: 62 KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDNGSKIYTRAGAFYSDKEGYVVNAGG 121 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 + + VGE G+I Q Sbjct: 122 ---------------ANLQGYAVGEDGKIIQ 137 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN----SGISPNIPPTPLEDLS 190 ++ + G + K KVI + + + QG + +P D Sbjct: 329 LSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGGTNWKESYASGVPVIGAPDTG 388 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + G LEDSN + E+ +I + + I M I+ Sbjct: 389 TLGQITGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQTIIQ 438 >gi|225181603|ref|ZP_03735044.1| protein of unknown function DUF1078 domain protein [Dethiobacter alkaliphilus AHT 1] gi|225167711|gb|EEG76521.1| protein of unknown function DUF1078 domain protein [Dethiobacter alkaliphilus AHT 1] Length = 408 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 MQ S G++ + ++ + +N++N +T F+ +V+F +++ Sbjct: 1 MQRSLFTGVSGLRNHQTKMDVIGNNIANVNTTAFKAGRVRFQDILSQNIRGASAPQDGRG 60 Query: 56 ---ISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + V G S GS STG D A++G +F + +RDG F + Sbjct: 61 GINPAQVGLGMSVASIDTIHTPGSLQSTGRPTDLAIQGSGFFVMSDGANEFYSRDGAFSL 120 Query: 109 TDDGSLVSASGKYPVLD 125 DG LV+ + + L Sbjct: 121 GSDGDLVNGANGFKPLG 137 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRREN------SGISPNIPPTPL 186 F +G+ G IS G V+ + L S D +G ++ S Sbjct: 294 TEFTIGKTGVISGIYTNGLVVELGQIALASFDNPEGLMKAAGNMYQVSSNSGQARVGGAG 353 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + GV ++ G LE SN + YE +MI ++ F + + +I ++ + E + Sbjct: 354 LEGRGV-IETGTLEMSNVDLSYEFTEMITTSRGFQANSRVITTSDDLLQEVVN 405 >gi|114562342|ref|YP_749855.1| flagellar hook protein FlgE [Shewanella frigidimarina NCIMB 400] gi|114333635|gb|ABI71017.1| flagellar basal body FlaE domain protein [Shewanella frigidimarina NCIMB 400] Length = 459 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYANSIFSNSKTAVGGGATT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S G TR G FKV +V ++ Sbjct: 62 TQVAQQFHQGSLQFTSNSLDMAISGGGFFVTSSELGSQDQSYTRAGAFKVDSSNYMVDSA 121 Query: 119 GK----YPVLDMAS---------VPIQIPQKDEI 139 G +PV + + PI+IP Sbjct: 122 GNFLQGFPVDEDGNSTSVSLTTTQPIKIPDTAGS 155 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRREN-----SGISPNIPPTPLE 187 +G G I+ G + + L QG + N S S Sbjct: 346 TNVGIGSDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGNTSWKASLDSGAALAGEAN 405 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + +++ LE SN + E+ +I + F + + ++ N ++ + I I Sbjct: 406 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLNQTILQI 458 >gi|16799780|ref|NP_470048.1| flagellar hook protein FlgE [Listeria innocua Clip11262] gi|16802739|ref|NP_464224.1| flagellar hook protein FlgE [Listeria monocytogenes EGD-e] gi|47095263|ref|ZP_00232874.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 1/2a F6854] gi|116872086|ref|YP_848867.1| flagellar hook protein FlgE [Listeria welshimeri serovar 6b str. SLCC5334] gi|224498779|ref|ZP_03667128.1| flagellar hook protein FlgE [Listeria monocytogenes Finland 1988] gi|224501998|ref|ZP_03670305.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-561] gi|254829354|ref|ZP_05234041.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N3-165] gi|254900067|ref|ZP_05259991.1| flagellar hook protein FlgE [Listeria monocytogenes J0161] gi|254911380|ref|ZP_05261392.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935707|ref|ZP_05267404.1| flagellar hook protein FlgE [Listeria monocytogenes F6900] gi|255027496|ref|ZP_05299482.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-003] gi|16410086|emb|CAC98775.1| lmo0697 [Listeria monocytogenes EGD-e] gi|16413157|emb|CAC95937.1| lin0705 [Listeria innocua Clip11262] gi|47016334|gb|EAL07256.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 1/2a F6854] gi|116740964|emb|CAK20084.1| flagellar hook protein FlgE, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|258601767|gb|EEW15092.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N3-165] gi|258608290|gb|EEW20898.1| flagellar hook protein FlgE [Listeria monocytogenes F6900] gi|293589317|gb|EFF97651.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|313620066|gb|EFR91579.1| flagellar hook protein FlgE [Listeria innocua FSL S4-378] Length = 411 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS STG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|254830312|ref|ZP_05234967.1| flagellar hook protein FlgE [Listeria monocytogenes 10403S] Length = 411 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS STG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|152997582|ref|YP_001342417.1| hypothetical protein Mmwyl1_3580 [Marinomonas sp. MWYL1] gi|150838506|gb|ABR72482.1| protein of unknown function DUF1078 domain protein [Marinomonas sp. MWYL1] Length = 565 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 4/145 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---ISFVA 60 FN L+ A LS +N++N DT GF+ +++F ++ S V+ Sbjct: 2 GFNTALSGIKASADYLSVTGNNIANADTTGFKKSRIEFDDLYNTSVLGAGSGNNIGSGVS 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 K G+ T LD A++G +F +++ TR G FK+ ++G LV+ SG Sbjct: 62 VSKVSQEFSSGNLSYTDNNLDLAIDGSGFFVIDAGIANAYTRAGNFKLDENGFLVTNSGN 121 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEK 145 V +V + + Sbjct: 122 -NVQGFNAVDGVVGGNLADLKIPTD 145 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 45/114 (39%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----- 187 + + G + +Q+ + + L + D + G + ++ P + Sbjct: 452 QGVSFDSDGLLIANYTNQQTATLGQIALATFDSTDGLMPSGHTMWVATKTSGPADIGRPN 511 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + + G LE+SN + E+ +I + + + + + E E ++ + I N+ Sbjct: 512 SATLGKIAGGALEESNVDLTAELVALIEAQRNYQANSKTL-ETENTVTQTIINL 564 >gi|196033292|ref|ZP_03100704.1| putative flagellar basal-body rod protein [Bacillus cereus W] gi|195993726|gb|EDX57682.1| putative flagellar basal-body rod protein [Bacillus cereus W] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 92/249 (36%), Gaps = 21/249 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASG 62 + QR++ ++N++N T GF+ + + + S V Sbjct: 2 GMMNYMQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFKVTDDGSLVS 116 +++ G+ T + DF L+ D +F LTRDG F + D L + Sbjct: 62 ATHVNLVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRR 172 SG + V+ + I+IP+ + V G ++Q + + ++R Sbjct: 121 TSGAF-VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLMQR 178 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 EN + + TVK LE+SN + EM ++ + ++ ++ +K Sbjct: 179 ENKSFTLAEGNSADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQKMISASQRVMTSFDK 238 Query: 233 SMLEAIRNI 241 + I Sbjct: 239 IYEKEANEI 247 >gi|237751739|ref|ZP_04582219.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] gi|229373105|gb|EEO23496.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] Length = 718 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 16/146 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G++ A + L ++N++N +TVGF+ + F +++ + KN + Sbjct: 1 MLRSLWSGVSGLQAHQVALDVESNNIANVNTVGFKYSRASFVDMLSQVKQIATSPYKNGL 60 Query: 53 DQK-----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGR 105 + V G+ +T + D A+EGD +F + RG TRDG Sbjct: 61 GGQNDFSVGMGVGINATTKVFSQGNTQNTDVKTDLAIEGDGFFIISRDRGETKNYTRDGE 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPI 131 F G+LV+ +G Y V PI Sbjct: 121 FLFDAKGNLVT-NGGYVVQGWNRPPI 145 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVTVKRGF----LEDSNANSMYE 209 +A +GL + S G N+ S P+ + + G LE SN + Sbjct: 626 LAQVGLANFANSAGLQAEGNNIFSETGNSGEPIIGAANTGRRGGVSGSKLEMSNVDLSRA 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + Q+I + + F + + I +++ + + Sbjct: 686 LTQLIVVQRGFQANSKAITTSDQILNTLL 714 >gi|289670506|ref|ZP_06491581.1| flagellar hook protein FlgE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 142 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 FN L+ A L+ ++N++N +T GF+ + +F+++ + + + S V Sbjct: 2 GFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G+ +F + S + TR G F+ +G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDLAISGEGFFTVSSNGAKMYTRAGNFQTDANGYVVNPQG 119 >gi|281411901|ref|YP_003345980.1| fagellar hook-basal body protein [Thermotoga naphthophila RKU-10] gi|281373004|gb|ADA66566.1| fagellar hook-basal body protein [Thermotoga naphthophila RKU-10] Length = 755 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G+ + + V +N+SN +TVGF+ +V F ++ +N Sbjct: 1 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRSSQENVG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G + S GSF +TG + D A++GD +F + TR G F + Sbjct: 61 GTNPMQIGLGSQVSSIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGSSYYYTRAGAFTL 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G+L+ S Y V Sbjct: 121 DSNGNLIQTSTGYKVQG 137 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 E F + E+GEI V+ + L + G NS + P Sbjct: 641 ESFAINEQGEIIGTFSNGLTDVLGQIALAVFNNPSGLSEVGNSLYVVSANSGVPKIGAPG 700 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+ + G LE SN + E +MI + F + +I ++ + E + Sbjct: 701 SGGRGI-LIPGALEMSNVDLAEEFTKMIVAQRGFQANARVITTADQILNELVN 752 >gi|149195335|ref|ZP_01872422.1| flagellar hook protein E [Caminibacter mediatlanticus TB-2] gi|149134527|gb|EDM23016.1| flagellar hook protein E [Caminibacter mediatlanticus TB-2] Length = 869 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 28/163 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------KNDID 53 M S G++ A + + A+N++N +TVGF+ + F ++ + D+ Sbjct: 1 MMRSLWSGVSGLNAHQIAMDVEANNIANVNTVGFKYSRTNFQNLLSQTIKSATAPQGDLG 60 Query: 54 QKISF-VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 K S V G S + GS +T D A+ GD +F + S G TR G F Sbjct: 61 GKNSLQVGLGATVSSVETMFKQGSIQNTDKNTDMAINGDGFFVVSSDGGKTYRYTRAGDF 120 Query: 107 KVTDDGSLVSASGKYPVLD-------------MASVPIQIPQK 136 G+ V +G Y V PI IP Sbjct: 121 TFDAQGNFVDPNG-YIVQGWLADPDTHNIDTATGLKPISIPPG 162 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 12/129 (9%) Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G YP + + Q I V G +A + + ++G + + Sbjct: 745 TQDG-YP--GGDLQQLVVDQTGTIIGVFTNGRSYS----LAQVAIAKFVNNEGLMNEGGT 797 Query: 176 GI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + P+ +G +++ LE SN + + Q+I + + F + + I + Sbjct: 798 LFSASPNSGDPIVGTAGTGGRGSIQPSALEMSNVDLSRSLTQLIVIQRGFQANSKTITTS 857 Query: 231 EKSMLEAIR 239 ++ + ++ Sbjct: 858 DQMLNTLLQ 866 >gi|304570583|ref|YP_388203.2| flagellar hook protein FlgE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 547 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 13/159 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVA 60 S G++ LA +R++ + +N++N +TVGF+ ++ F + + + Q V Sbjct: 6 SMWTGISGLLAHGERMNVLGNNIANVNTVGFKGARMDFEDFISQDVNTASGTRQVGRGVG 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSA 117 G Y GSF +T D A+ G +FA+ SP+G TR G F+ +G LV Sbjct: 66 IGTIYGDFSQGSFETTTEATDLAIGGRGFFAV-SPKGEETAYYTRAGNFRFDKEGYLVDP 124 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G Y + QI G +S K+ Sbjct: 125 HG-YVLQGW-----QIETPRPSLATSTAGSVSSTSKIKG 157 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPN-----IPPTPLE 187 + V G + G V+ + LY R + S + P P Sbjct: 433 QNVTVTRDGILQGRYSNGAVLDLYQITLYDFQSKDNLRREGGNLFSESNASGLAAPGPAN 492 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 TV LE SN + E MI + F S + +I + +MLE + + Sbjct: 493 ANGYGTVNSNSLEQSNVDLAKEFVNMITTQRGFQSNSKVITTTD-TMLEVVIQM 545 >gi|158423059|ref|YP_001524351.1| putative flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] gi|158329948|dbj|BAF87433.1| putative flagellar basal body rod protein [Azorhizobium caulinodans ORS 571] Length = 257 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 25/249 (10%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 IG + A +++TVADN +N T G R + + + VA+G + Sbjct: 15 IGASGLRAQVVKVATVADNTANARTPGHRKVAAE---------TTSAPAGAGVATGLRHY 65 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD-GSLVSASGKY--- 121 G+ +TG+ D + GD +F + +G +LTR G F G L +A+G Sbjct: 66 ISSAGTASATGSPTDMMVSGDGFFMVSDGKGNTLLTRSGNFAFDAQSGQLKNAAGYALMA 125 Query: 122 -PVLDMASVPIQIP-QKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRREN 174 P A P+Q+ ++ VG G ++ + + + L + G Sbjct: 126 TPNGGGAPTPVQLTAEQASSLKVGADGTLASTDADGRSQALYRIPLATTANPDGMTPVAG 185 Query: 175 SGISPNIPPTPLE----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 P P T++ G+LEDSN + EM ++ F + + Sbjct: 186 DAFQPGSASGPARTFVSGQGPGTIRAGYLEDSNVDMATEMTDLVTSQASFMANFRTVRMG 245 Query: 231 EKSMLEAIR 239 + + + Sbjct: 246 IEMLDVVLN 254 >gi|323700469|ref|ZP_08112381.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323460401|gb|EGB16266.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 516 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 7/170 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKISFVA 60 S G++ A Q S V++N++N+ T G++++ + F +V + + Q + V Sbjct: 6 SMYTGISGLQAQSQATSVVSNNLANSTTTGYKSVSIAFEDVFYSTVYAGGSLGQVGNGVT 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSAS 118 + G++ +T + D A+ GD ++ + P TRDG F + DG LV + Sbjct: 66 TSSLTTDYSQGAYETTNSVTDVAINGDGFYIVVDPDTGNTYYTRDGGFTLDTDGYLVDSH 125 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVG-EKGEISQKGKVIATMGLYSVDMSQ 167 G + V + I + + G+V + L S + Sbjct: 126 GNH-VQGWETEDGSITGGLVDIQIDNSQSPPQATGEVAIQVNLDSTETDN 174 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP------ 182 P + + E G I + + + + T L +QG + S Sbjct: 398 PGELTDITINENGVIEGSYTNGQSQELYTFALADFTNTQGLYSEGGNLYSATTESGQALV 457 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 TP G T+ LE SN ++ ++ +I + + + + +I + + AI Sbjct: 458 GTPGSAGFG-TIASNSLEQSNVDTATQLTNLIIIQAAYQANSKIITTADTLLSTAI 512 >gi|269138582|ref|YP_003295282.1| flagellar hook protein [Edwardsiella tarda EIB202] gi|267984242|gb|ACY84071.1| flagellar hook protein [Edwardsiella tarda EIB202] gi|304558592|gb|ADM41256.1| Flagellar hook protein FlgE [Edwardsiella tarda FL6-60] Length = 410 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 18/157 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A +L + +N++N+ TVGF++ V F+++ K + ++ V Sbjct: 2 GFSQAISGMNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + G+ +T LD A+ G +F ++ P G + TR+G+F G L +A G Y Sbjct: 60 ---DFKDGTTTTTNRGLDVAISGQGFFRMQDPNGSVYYTRNGQFSKDAKGFLTNAQGMYL 116 Query: 123 VL------------DMASVPIQIPQKDEIFNVGEKGE 147 VPIQIP +G Sbjct: 117 TGYPAAGTPPTIQQGADPVPIQIPTGLMPAKASTQGT 153 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVT 193 + + + G I+ Q+ +++ + + + +G V N+ P+ SG + Sbjct: 299 YQINDDGTITGSYTNQQKQLLGQIVMANFAAPEGLVSEGNNVWSESAKSGQPIVGTSGTS 358 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +E SN + ++ MI + + S I ++ + + Sbjct: 359 GLGSLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVN 408 >gi|222100886|ref|YP_002535454.1| hypothetical protein CTN_1912 [Thermotoga neapolitana DSM 4359] gi|221573276|gb|ACM24088.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359] Length = 759 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 21/207 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G+ + + V +N+SN +TVGF+ +V F ++ ++ Sbjct: 2 MMRSLYSGITGLKNFQVAMDVVGNNISNVNTVGFKASRVNFETMLAQTIKAGRAPQESVG 61 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G + S GSF +TG + D A++GD +F + TR G F + Sbjct: 62 GTNPMQIGLGSQVASIDKIMTQGSFQNTGVKTDLAIQGDGFFIVSDGNAYYYTRAGAFTL 121 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 +G+L+ S Y V + +Q P+ E + + I G ++ + G+ Sbjct: 122 DSNGNLIQTSTGYKVQGWTA--VQDPETGERY-IDTNRPI---GDLVISAGMTMPAKKTS 175 Query: 169 FVRRE---NSGISPNIPPTPLEDLSGV 192 VR E NS + P L D SGV Sbjct: 176 NVRFEGNLNSNVGPGSFTITLTDDSGV 202 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGIS-PNIPPTPLEDLSG 191 E F + E+GEI V+ + L + G + NS + + P G Sbjct: 645 ESFAINEQGEIIGTFSNGLTDVLGQIALAVFNNPAGLMEVGNSLYAVSSNSGVPKIGAPG 704 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E +MI + F + +I ++ + E + Sbjct: 705 SGGRGTLIPGALEMSNVDLAEEFTKMIVAQRGFQANARVITTADQILNELVN 756 >gi|224373466|ref|YP_002607838.1| flagellar basal body and hook protein [Nautilia profundicola AmH] gi|223589855|gb|ACM93591.1| flagellar basal body and hook protein [Nautilia profundicola AmH] Length = 642 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---QKIS 57 M TSF G+ + + + DN++N +T G++ +FS + N Sbjct: 1 MTTSFYNGITGLKSFQYGIDIWGDNIANINTTGYKEQIPEFSTLFSETLNSDPVYSDIGM 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 ++ + GS I+T D ++ G+ W A++ TR G F G LV Sbjct: 61 GSKLSSTAINLDQGSLINTDNPFDVSINGEGWLAVKRYNDTYYTRTGSFTRDAQGYLVDD 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIF--NVGEKGEISQKGK 153 +G Y ++ A+ IQ ++ ISQ + Sbjct: 121 NGDYLLVANANNLIQNADGSYSVNRSINTDNLISQNTQ 158 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 13/114 (11%) Query: 138 EIFNVGEKGEISQ---KGK--VIATMGLYSVDMSQGFVRRENSGISPNIPP--------T 184 + + + + G+I G+ V+ + +Y QG + Sbjct: 524 KNYQIDQNGQIQALFSNGQMSVLGQIPVYHFQNDQGLESLGGNLFRETANSNKAILYTDQ 583 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +SG ++ LE SN + M ++I + ++S + +++ + AI Sbjct: 584 NGNYISGSSIISNTLEASNVDFSQAMTELIVTQKAYSSAAKTVTTSDQMIQRAI 637 >gi|327480020|gb|AEA83330.1| flagellar basal body FlaE domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 558 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNIGL+ A + L+ +N++N TVGF+ + +FS+V A + + + S V Sbjct: 2 SFNIGLSGLRAASKDLNVTGNNIANAGTVGFKQSRAEFSDVYAASVLGTGKNPQGSGVLM 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG-- 119 G+ T LD A+ G+ +F + + + TR G F +G LV G Sbjct: 62 SNISQQFNQGNINYTQNALDLAINGNGFFQVSNNGAVSYTRAGYFGTDREGFLVDNFGYK 121 Query: 120 --KYPVLDMAS 128 +PV + + Sbjct: 122 LQGFPVDNNGN 132 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 + + G I G+ V + L + QG + + TP Sbjct: 447 LEIDDTGVIFARYTNGQSKVQGQIILANFANVQGLTPVGKTQWVQSFESGEPVVGTPGSG 506 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LEDSN ++ +I + + + I+ I Sbjct: 507 TLGA-LQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIIN 556 >gi|46906948|ref|YP_013337.1| flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. F2365] gi|47091659|ref|ZP_00229455.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 4b H7858] gi|217965205|ref|YP_002350883.1| flagellar hook protein [Listeria monocytogenes HCC23] gi|226223328|ref|YP_002757435.1| flagellar hook protein FlgE [Listeria monocytogenes Clip81459] gi|254824023|ref|ZP_05229024.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-194] gi|254853099|ref|ZP_05242447.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-503] gi|254932023|ref|ZP_05265382.1| flagellar hook protein FlgE [Listeria monocytogenes HPB2262] gi|300764509|ref|ZP_07074502.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N1-017] gi|46880214|gb|AAT03514.1| putative flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. F2365] gi|47019978|gb|EAL10715.1| flagellar hook protein FlgE, putative [Listeria monocytogenes str. 4b H7858] gi|217334475|gb|ACK40269.1| flagellar hook protein [Listeria monocytogenes HCC23] gi|225875790|emb|CAS04493.1| Putative flagellar hook protein FlgE [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606448|gb|EEW19056.1| flagellar hook protein FlgE [Listeria monocytogenes FSL R2-503] gi|293583575|gb|EFF95607.1| flagellar hook protein FlgE [Listeria monocytogenes HPB2262] gi|293593251|gb|EFG01012.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-194] gi|300514863|gb|EFK41917.1| flagellar hook protein FlgE [Listeria monocytogenes FSL N1-017] gi|307570236|emb|CAR83415.1| flagellar hook protein [Listeria monocytogenes L99] gi|332311122|gb|EGJ24217.1| Flagellar hook protein FlgE [Listeria monocytogenes str. Scott A] Length = 411 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS +TG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|290893994|ref|ZP_06556969.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-071] gi|290556440|gb|EFD89979.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-071] Length = 411 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS +TG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|260222467|emb|CBA32060.1| hypothetical protein Csp_D30230 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 188 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---FVA 60 SF GL+ + + L + +N++N +TVG + + +F+ ++ ++ V+ Sbjct: 2 SFQTGLSGLNSSSKNLDVIGNNIANANTVGMKASRTEFAALIATQLGPAGGNLTPGIGVS 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 G G+ TG LD A+ G+ +F + P TRDG+FK+ D G+L++ +G Sbjct: 62 VGTVAQQFTQGNISITGNNLDVAINGNGFFQVTMPDQSRAYTRDGQFKLDDVGNLIT-NG 120 Query: 120 KYPVLD 125 V+ Sbjct: 121 GANVMG 126 >gi|255521910|ref|ZP_05389147.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-175] Length = 411 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS +TG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|125972995|ref|YP_001036905.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|256004792|ref|ZP_05429767.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281417206|ref|ZP_06248226.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|125713220|gb|ABN51712.1| protein of unknown function DUF1078-like protein [Clostridium thermocellum ATCC 27405] gi|255991242|gb|EEU01349.1| protein of unknown function DUF1078 domain protein [Clostridium thermocellum DSM 2360] gi|281408608|gb|EFB38866.1| fagellar hook-basal body protein [Clostridium thermocellum JW20] gi|316940769|gb|ADU74803.1| flagellar hook-basal body protein [Clostridium thermocellum DSM 1313] Length = 440 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 16/135 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ A + ++ + +N++N +TVGF++ +V F EV Sbjct: 1 MMRSMFSGVSGLQAHQTKMDVIGNNVANVNTVGFKSSRVTFQEVFSQTLKGASSPDPTTG 60 Query: 61 SGKEYLSK--------------EVGSFISTGTELDFALEGDAWFALE--SPRGIILTRDG 104 G + GS T D A+EGD +F ++ S TR G Sbjct: 61 RGGTNPMQVGLGLGVATIDTLMTRGSVQRTDNPTDLAIEGDGFFIVKGGSSDTFKFTRAG 120 Query: 105 RFKVTDDGSLVSASG 119 F + G+LV+ SG Sbjct: 121 NFGIDRLGNLVTGSG 135 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 11/112 (9%) Query: 139 IFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV- 192 F++G G I G+ + + L S D G + + P + Sbjct: 326 TFSIGSDGMIMGIYSNGQQQPLGLIALASFDNPAGLEKVGENMYIPTSNSGEFKKGVKAG 385 Query: 193 -----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E +MI + F + + +I +++ + E + Sbjct: 386 TEGVGTLSPGTLEMSNVDLSKEFTEMIITQRGFQANSRIITTSDEMLQELVN 437 >gi|149675698|dbj|BAF64728.1| flagellar hook protein [Shewanella livingstonensis] Length = 459 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 S NI L+ A ++ L+T A+N++N +T+GF+ + +F++V N + Sbjct: 2 SLNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYADSIFSNSKTAVGGGATT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S G TR G FKV +V ++ Sbjct: 62 TQVAQQFHQGSLQFTSNSLDMAISGGGFFVTSSELGSQDQSYTRAGAFKVDSSNYMVDSA 121 Query: 119 GK----YPVLDMAS---------VPIQIPQKDEI 139 G +PV + + PI+IP Sbjct: 122 GNFLQGFPVDEDGNSTSVSLTTTQPIKIPDTAGS 155 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRREN-----SGISPNIPPTPLE 187 +G G I+ G + + L QG + N S S Sbjct: 346 TNVGIGSDGLITASYSNGSTVPLSRVALVRFANEQGLTQVGNTSWKASLDSGAALAGEAN 405 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + +++ LE SN + E+ +I + F + + ++ N ++ + I I Sbjct: 406 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLNQTILQI 458 >gi|313497761|gb|ADR59127.1| FlgE [Pseudomonas putida BIRD-1] Length = 440 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A + L+ +N++N T GF++ + +F++ + + +G Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKTVIGTGV 61 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + G+ +TG LD A++G+ +FAL I TR G F G +V+ASG Sbjct: 62 KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDNGSKIYTRAGAFYSDKAGYVVNASG 121 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 + + VGE G+I Q Sbjct: 122 ---------------ANLQGYAVGEDGKIIQ 137 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN----SGISPNIPPTPLEDLS 190 ++ + G + K KVI + + + QG + +P D Sbjct: 329 LSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGGTNWKESYASGVPVIGAPDTG 388 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + G LEDSN + E+ +I + + I M I+ Sbjct: 389 TLGQISGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQTIIQ 438 >gi|254994099|ref|ZP_05276289.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-064] Length = 208 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS +TG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL+ PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 >gi|39934722|ref|NP_946998.1| flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris CGA009] gi|39648572|emb|CAE27093.1| possible flagellar basal-body rod protein FlgG [Rhodopseudomonas palustris CGA009] Length = 273 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 102/268 (38%), Gaps = 43/268 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + A ++ N++N T F+ FS+++ Q V Sbjct: 6 ALWTATTGLQAQSAAFENISGNVANAQTTAFKATNTAFSDLIYP-----PQVSDTVLWRS 60 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------------IILTRDGRFKVTD 110 + + GS A+ G+ +F +E+P G TR G F++ Sbjct: 61 VLTNGQQGSISYDPVSTHMAIGGEGYFTVEAPSGVSASGQPTFSTSETTYTRRGDFEL-K 119 Query: 111 DGSLVSASGKY-------PVLDMAS--VPIQIPQKDEIFNVGE------------KGEIS 149 +G LV+ +G Y PV P+Q + ++G +G S Sbjct: 120 NGYLVNGAGYYLMGAQIDPVTGAVGSTGPLQFDTSTALPDLGVLQSLSVSSSGKLQGTYS 179 Query: 150 QKGKV-IATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 + V +A++ + S QGF+++ + G SP P ++ TV LE SN + Sbjct: 180 KGQTVDVASLSIASF-AGQGFMKQGSGGTFSPTPQSGPALFVNAGTVVGSALEASNVDIA 238 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSML 235 +M M+ Q +++ T ++ + + ML Sbjct: 239 DQMTTMVQAQQAYSACTRVVIASNEMML 266 >gi|288871078|ref|ZP_06116279.2| flagellar hook protein [Clostridium hathewayi DSM 13479] gi|288864882|gb|EFC97180.1| flagellar hook protein [Clostridium hathewayi DSM 13479] Length = 653 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 15/134 (11%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDIDQKISFVASGK 63 A + +L + +N++N +T GF++ + +F +V N S V G Sbjct: 1 MKAHQTKLDVIGNNIANVNTYGFKSSRARFQDVFYQTLQSAAGGDNNKGGTNASQVGYGS 60 Query: 64 EY----LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD-GSLVSA 117 + L + STG LD A+ G+ +F + G I TR G + + G+LV + Sbjct: 61 QLGGIDLDMSRSALQSTGRPLDVAIAGEGFFQVMDADGNIFYTRAGNLMLDSNSGNLVDS 120 Query: 118 SGKYPVLDMASVPI 131 +G Y VL ++ P+ Sbjct: 121 NG-YTVLGVSGDPL 133 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 12/127 (9%) Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQ----KGKV-IATMGLYSVDMSQGFVRRENSGIS 178 L+ + I + G I KGK+ I + L + + G NS Sbjct: 525 LENGTEGGAISLSGASIAILGNGIIEATHPDKGKIQIGRIDLVTFENPYGLEESGNSYFR 584 Query: 179 PNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ED +G +K LE SN + E MI + F + + +I ++ Sbjct: 585 ATSNSGEAKACQAGEDGTGA-LKTSSLEMSNVDISTEFSDMIVTQRGFQANSRIITVSDS 643 Query: 233 SMLEAIR 239 + E + Sbjct: 644 ILEELVN 650 >gi|332994162|gb|AEF04217.1| flagellar hook protein FlgE [Alteromonas sp. SN2] Length = 458 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L A+N++N +TVGF+ + +F +V + + V + Sbjct: 2 SFNIALSGVAAAQKDLDVTANNIANVNTVGFKESRAEFGDVYATSLLAGSKTKVGDGVLT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKVTDDGSLVSAS 118 GS T T LD A+ G+ +FA E+ R TR G+FK+ DD +V+++ Sbjct: 62 QDVAQQFSQGSLQFTNTALDLAITGNGFFATVPDETSRDFSFTRAGQFKLDDDNYVVNSN 121 Query: 119 G----KYPVLDM---------ASVPIQIPQKDEI 139 G +PV + P+QIP Sbjct: 122 GDLLLGFPVNSDSTSSSVALSTTEPVQIPDSSGS 155 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 16/129 (12%) Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVR------R 172 L+ +P+ + ++G G + + I + L QG + + Sbjct: 334 LEQDGLPV---GRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFANEQGLTQQSSTEWK 390 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 E+ + G + LE +N N E+ MI + F + + ++ N Sbjct: 391 ESILSGEALAGEATTGTFG-EINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNN- 448 Query: 233 SMLEAIRNI 241 S+ + I NI Sbjct: 449 SLNQTILNI 457 >gi|26991077|ref|NP_746502.1| flagellar hook protein FlgE [Pseudomonas putida KT2440] gi|24986112|gb|AAN69966.1|AE016635_2 flagellar hook protein FlgE [Pseudomonas putida KT2440] Length = 440 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A + L+ +N++N T GF++ + +F++ + + +G Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKTVIGTGV 61 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + G+ +TG LD A++G+ +FAL I TR G F G +V+ASG Sbjct: 62 KTAAVSQLFTPGNINATGQALDMAIDGNGFFALNDNGSKIYTRAGAFYSDKAGYVVNASG 121 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 + + VGE G+I Q Sbjct: 122 ---------------ANLQGYAVGEDGKIIQ 137 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN----SGISPNIPPTPLEDLS 190 ++ + G + K KVI + + + QG + +P D Sbjct: 329 LSIDQNGYLFASFTNGKDKVIGQVAIANFANLQGLTPIGGTNWKESYASGVPVIGAPDTG 388 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + G LEDSN + E+ +I + + I M I+ Sbjct: 389 TLGQISGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQTIIQ 438 >gi|118444200|ref|YP_877983.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] gi|118134656|gb|ABK61700.1| flagellar basal-body rod protein FlgG [Clostridium novyi NT] Length = 485 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 43/204 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ + +L +N++N T GF++ +V+F +++ G +N Sbjct: 1 MLRSMYAGISGMKVNQTKLDVTGNNIANVSTTGFKSSRVRFKDMLSQNMGEAVGPGRNQG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFAL-------ESPRGII-- 99 V G + G T LD A++G +F + + GI Sbjct: 61 GVNGKQVGLGVQVAGIDTVMSQGMMQPTSRNLDVAMDGTGYFIVAKGALPESNAGGIAVS 120 Query: 100 --------------LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 TRDG F + G+L+++ G Y V+ A I +KD N Sbjct: 121 ESEHTMSGGAFQVNYTRDGSFTLDHQGNLLTSDG-YRVMGYA-----INEKDSTGN--AT 172 Query: 146 GEISQKGKVIATMGLYSVDMSQGF 169 G++S + + D G Sbjct: 173 GDVSIDYNANGAVNFVNADGEFGL 196 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%) Query: 142 VGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP----------PTPLEDLSG 191 V + G ++ G+ + S +G + + S TP +G Sbjct: 376 VLDDGTVTALGQ----IATASFKNQEGLKKEGKNLYSNTANSGVPTVRSGLGTPKNLDNG 431 Query: 192 ---VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G LE SN + + MI T+ F + +I ++ + + I Sbjct: 432 DGYGEMLQGMLEMSNVDLAEQFTDMIVTTRAFQASGKMISTGDEILQDIIN 482 >gi|224373467|ref|YP_002607839.1| flagellar hook protein FlgE [Nautilia profundicola AmH] gi|223588607|gb|ACM92343.1| flagellar hook protein FlgE [Nautilia profundicola AmH] Length = 853 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 28/163 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------KNDID 53 M S G++ A + + A+N++N +TVGF+ + F ++ + D+ Sbjct: 1 MMRSLWSGVSGLNAHQIAMDVEANNIANVNTVGFKYSRTNFQNLLSQTVKSATAPQGDLG 60 Query: 54 QKIS-----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 K S + + GS +T D A+ GD +F + G TR G F Sbjct: 61 GKNSLQIGLGTSVSAVETMFKQGSIQNTDKNTDMAINGDGFFVVSGDGGKTYRYTRAGDF 120 Query: 107 KVTDDGSLVSASGKYPVLD-------------MASVPIQIPQK 136 +G+ V +G Y V PI IP Sbjct: 121 TFDANGNFVDPNG-YIVQGWLADPETHTIDTASGVKPISIPPG 162 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 12/129 (9%) Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G YP + + Q + V G +A + + ++G + + Sbjct: 729 TQDG-YP--GGDLQQLVVDQTGTVIGVFTNGRSYS----LAQVAIAKFVNNEGLMSEGGT 781 Query: 176 GI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + P+ +G +++ LE SN + + Q+I + + F + + I + Sbjct: 782 LFSASPNSGEPIIGTAGTGGRGSIQPSSLEMSNVDLSRSLTQLIVIQRGFQANSKTITTS 841 Query: 231 EKSMLEAIR 239 ++ + ++ Sbjct: 842 DQMLNTLLQ 850 >gi|269796390|ref|YP_003315845.1| flagellar hook protein FlgE [Sanguibacter keddieii DSM 10542] gi|269098575|gb|ACZ23011.1| flagellar hook protein FlgE [Sanguibacter keddieii DSM 10542] Length = 394 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 27/181 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + L +N++N +T GF+ + +F + + + Sbjct: 1 MLRSLFSGISGLRTHQTMLDVTGNNIANVNTTGFKASQTQFKDTLSQVLTNAGGAQGGVG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q V + + G+ T D + GD +F + TR G F Sbjct: 61 GTNPAQVGLGVQLAGVTTNFQQGAAQVTNRSTDMMISGDGFFVVSKNGENFYTRSGAFDF 120 Query: 109 TDDGSLVSASGKYP--------VLDMAS--VPIQIP-----QKDEIFNVGEKGEISQKGK 153 +G+LV+A G V+D P+++P VG G + Sbjct: 121 DANGNLVTAEGALVQGWAAVDGVVDPNGALAPLRLPTSVLNPASATTQVGFDGNLPSDAA 180 Query: 154 V 154 V Sbjct: 181 V 181 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + F + G I G + + L + G + S + + T Sbjct: 280 QSFTINADGTIIGAFSNGLKSPVGRIALGTFANPVGLEKAGGSLYTTTVNSGEAAIGTAG 339 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E +I + F + + +I +++ + E + Sbjct: 340 TGGRG-SLVGGALEMSNVDLSQEFTNLIIAQRGFQANSRVITTSDELLQELVN 391 >gi|332140546|ref|YP_004426284.1| flagellar hook protein FlgE [Alteromonas macleodii str. 'Deep ecotype'] gi|327550568|gb|AEA97286.1| flagellar hook protein FlgE [Alteromonas macleodii str. 'Deep ecotype'] Length = 461 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 10/167 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L A+N++N +TVGF+ + +F +V A + + V + Sbjct: 2 SFNIALSGVSAAQKDLDVTANNIANVNTVGFKESRAEFGDVYAASLLAGGKTKVGDGVLT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 + GS T T LD A+ G+ +FA + R TR G+FK+ D +V+++ Sbjct: 62 QEVAQQFSQGSLQFTNTSLDLAITGNGFFATVPEITSRDFSFTRAGQFKLDSDNFVVNSN 121 Query: 119 G----KYPVLDMASVPIQIPQKDEIFNV-GEKGEISQKGKVIATMGL 160 G +PV + E + G Q +V M L Sbjct: 122 GDNLLGFPVNADGTSASVALSTTEPVRIPDSSGSPQQTSEVDIRMNL 168 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 16/129 (12%) Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVR------R 172 L+ +P+ + ++G G + + I + L QG + + Sbjct: 337 LEQDGLPV---GRLTGIDIGPDGLVRATFSNGTSEPIVRVALVRFSNEQGLTQESSTQWK 393 Query: 173 ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 E+ + G + LE +N N E+ MI + F + + ++ N Sbjct: 394 ESILSGEALAGEATTGTFG-EINSSALEQANVNLTTELIDMIIAQRNFQANSRALEVNN- 451 Query: 233 SMLEAIRNI 241 S+ + I NI Sbjct: 452 SLNQTILNI 460 >gi|237817502|ref|ZP_04596493.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] gi|237787337|gb|EEP61554.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] Length = 456 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 66 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 121 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 122 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 181 Query: 120 KYPV 123 Y + Sbjct: 182 YYLL 185 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 336 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 395 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 396 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 453 >gi|256833233|ref|YP_003161960.1| hypothetical protein Jden_2019 [Jonesia denitrificans DSM 20603] gi|256686764|gb|ACV09657.1| protein of unknown function DUF1078 domain protein [Jonesia denitrificans DSM 20603] Length = 397 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 28/215 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + + L +N++N +T G++ + +F + + + Sbjct: 1 MLRSLFSGISGMRSHQTMLDVTGNNIANVNTTGYKASQTQFKDTLSQMVQNAGAAQGGVG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q V + G+ +TG D + GD +F ++ TR G F Sbjct: 61 GTNPAQVGLGVQVSGITTNFTQGAAQTTGRSTDMMISGDGFFVVQKDGQQFYTRAGAFDF 120 Query: 109 TDDGSLVSASGKYPV--------LDMASV--PIQIP-----QKDEIFNVGEKGEI-SQKG 152 +G+ V+ G Y + +D+ P+++P +E + G + S Sbjct: 121 DSNGNFVTPEGAYVMGWPATNGAIDVNGQIGPLRLPMTALLGSEETTAISFDGNLPSDAA 180 Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 V S G R + P P Sbjct: 181 TGTNLDRDVVVYDSLGNARTVTLSFAKVTAPGPGA 215 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----- 187 + F + G + G + + + L + G ++ + ++ + Sbjct: 283 QSFQITADGTVLGAFSNGLKQAVGKISLATFANPAGLEKQGGNLYGTSVNSGDAQVGEPG 342 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E +I + F + + +I +++ + E + Sbjct: 343 MGGRGGLVGGALEMSNVDLSQEFTNLIIAQRGFQANSRVITTSDEVLQELVN 394 >gi|327193059|gb|EGE59971.1| flagellar hook protein [Rhizobium etli CNPAF512] Length = 434 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLP-SSGGNYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F ++ P G +LTR G F+ D+G+LV+A+G Sbjct: 65 RQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAAGFQL 124 Query: 123 VL---DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + D S + + D + V + GL ++ + G + + Sbjct: 125 MGYSYDSGSPAVVVNGFDGLVPVN-----------VNQDGLTAIASTSGVFKGNLDSNAN 173 Query: 180 NIPPTPLE 187 P P Sbjct: 174 VAPVAPAT 181 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 12/126 (9%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRE 173 + Q + + G + K K + + L +V G V Sbjct: 307 GTGTPNGQAATPVKDVTIDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSA 366 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + P + G T+K G LE SN + E+ +MI + + + + + Sbjct: 367 NGQSGVTVTGFPQTNGLG-TIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDI 425 Query: 234 MLEAIR 239 M + Sbjct: 426 MDVLVN 431 >gi|302670727|ref|YP_003830687.1| flagellar hook protein FlgE1 [Butyrivibrio proteoclasticus B316] gi|302395200|gb|ADL34105.1| flagellar hook protein FlgE1 [Butyrivibrio proteoclasticus B316] Length = 1049 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 13/138 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------- 49 M S G+A + ++ + +N++N +T F++ + FS+++ Sbjct: 1 MMRSLYSGVAGLKTHQTKMDVIGNNIANVNTTSFKSQSITFSDLMYQTTQTASGATETKG 60 Query: 50 --NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 N + + G+ +T D + G+++F + + + TRDG F Sbjct: 61 GVNARQIGLGAKSGAINTAITSQGATQTTNNPFDIMITGESFFIVNNGNENLYTRDGSFY 120 Query: 108 VTDDGSLVSASGKYPVLD 125 V G+L S Y V Sbjct: 121 VDGAGNLAMQSNGYLVQG 138 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 10/111 (9%) Query: 140 FNVGEKGEISQ---KGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----DLS 190 ++ G+I G+ ++ + + G + ++ + + Sbjct: 938 VSISTDGQIYATYSNGQTKLLGQIASAEFANASGLSKEGDNLYASTLNSGEATVQDITTD 997 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G + G LE SN + + +MI + F + + +I ++LE + N+ Sbjct: 998 GGYMNTGVLEMSNVDLSSQFTEMITTQRGFQANSRII-TVSDTLLEELTNL 1047 >gi|238919259|ref|YP_002932774.1| flagellar hook protein FlgE [Edwardsiella ictaluri 93-146] gi|238868828|gb|ACR68539.1| flagellar hook protein FlgE [Edwardsiella ictaluri 93-146] Length = 424 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A +L + +N++N+ TVGF++ V F+++ K + K++ V Sbjct: 2 GFSQAISGMNAASTQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKIGLGVKVASVDQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 + G+ +T LD A+ G +F +++P G + +R+G+F G L +A G Y Sbjct: 60 ---DFKDGATTTTNRALDVAISGQGFFRMQAPNGSVNYSRNGQFTKDAKGFLTNAQGLYL 116 Query: 123 VL-DMASVPIQIPQKDEIF 140 A P I Q + Sbjct: 117 TGYPAAGTPPTIQQGADPV 135 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 + + + G I+ Q+ +++ + + + +G N+ P+ SG Sbjct: 313 YQINDDGSITGSYTNQQKQLLGQIVMANFADPEGLTSEGNNEWSESAKSGQPIIGTSGTS 372 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G +E SN + ++ MI + + S I ++ + + Sbjct: 373 GLGTLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVN 422 >gi|289433975|ref|YP_003463847.1| flagellar hook protein FlgE, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170219|emb|CBH26759.1| flagellar hook protein FlgE, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634374|gb|EFS00969.1| flagellar hook protein FlgE [Listeria seeligeri FSL N1-067] gi|313639059|gb|EFS04046.1| flagellar hook protein FlgE [Listeria seeligeri FSL S4-171] Length = 411 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 28/183 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQNTMGSVAGGLYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G GS STG D AL+G +F G I+ TRDG F Sbjct: 61 TNPMSFGSGAKIGAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+D+ L + GKY VL PIQIP I GE ++ G + Sbjct: 121 VSDNNYLTTQQGKYVMGYATDKNGNVLSGNLQPIQIPLNSAIP-----GEATKTGSLSGN 175 Query: 158 MGL 160 + L Sbjct: 176 IPL 178 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 312 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 366 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 367 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 408 >gi|226225729|ref|YP_002759835.1| flagellar hook protein FlgE [Gemmatimonas aurantiaca T-27] gi|226088920|dbj|BAH37365.1| flagellar hook protein FlgE [Gemmatimonas aurantiaca T-27] Length = 506 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 12/153 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + R+ + +N++N +TV F+ +V F E + + Sbjct: 1 MLRSLYAGVSGLRNNQVRMDVIGNNIANVNTVAFKAGRVTFKEGFAQLLAGASRPPGDQG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G G+ +TG D A++GD++F + TR G F+V Sbjct: 61 GINPIQIGLGMQIGSIDQIFNQGNLETTGLNTDIAIQGDSFFVVRKGNQSFYTRAGNFQV 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 G LVS + + V Q+ + Sbjct: 121 DALGQLVSPANGFIVQGRMYENGQLQDGIQDIR 153 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----- 187 + F++ G I+ +A + L + G +R ++ + Sbjct: 392 QNFSIDRFGLITGFFTNGTTSPLARIVLADFNNPSGLLRIGDNMYQESANSGGAVLGFAL 451 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + S + G LE SN + E MI + F + ++ +++ + E + Sbjct: 452 EGSQSQMTSGALEMSNVDLAQEFTNMIVAQRGFQANGKVVSTSDEMLQELMT 503 >gi|225628428|ref|ZP_03786462.1| flagellar hook protein FlgE [Brucella ceti str. Cudo] gi|225616274|gb|EEH13322.1| flagellar hook protein FlgE [Brucella ceti str. Cudo] Length = 456 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 66 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 121 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 122 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 181 Query: 120 KYPV 123 Y + Sbjct: 182 YYLL 185 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 336 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 395 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 396 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 453 >gi|117928057|ref|YP_872608.1| hypothetical protein Acel_0849 [Acidothermus cellulolyticus 11B] gi|117648520|gb|ABK52622.1| protein of unknown function DUF1078 domain protein [Acidothermus cellulolyticus 11B] Length = 398 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 12/134 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + L V +N++N +TVGF+ +V+F + + + Sbjct: 1 MLRSLFSGVSGLRAHQTMLDVVGNNIANVNTVGFKASQVEFEDTLSQMLRAAGAPQGVQG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q V + G +TG + D ++GD +F L+ + TR+G F Sbjct: 61 GTNPAQVGLGVQIAAISTTFTQGPAETTGVDTDLMIQGDGFFVLDDGGQRVYTRNGAFSF 120 Query: 109 TDDGSLVSASGKYP 122 +G+LVSA+G Sbjct: 121 DANGNLVSANGALV 134 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 10/111 (9%) Query: 139 IFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + + G I G + +A + L + + G + S + ++ + + T Sbjct: 285 SYTISPDGTIQGVFTNGMKQPLAKIALATFNNPGGLTKVGTSEYAESVNSGAAQIGASGT 344 Query: 194 -----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E +I + F + +I +++ + + + Sbjct: 345 GSRGQLAAGELEGSNVDLSQEFTNLIIAERGFQANAKVITTSDQVLQDLVN 395 >gi|104782843|ref|YP_609341.1| flagellar hook protein FlgE [Pseudomonas entomophila L48] gi|95111830|emb|CAK16554.1| flagellar hook protein FlgE [Pseudomonas entomophila L48] Length = 463 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKISFVA 60 SFNIGL+ A ++L +N++N +T GF++ + +F++V +Q + V Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTNGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G +TG LD ++G +F L + +R G F+ D +V++ G Sbjct: 62 LANVSQQFGQGDVNNTGNVLDMGIQGQGFFVLSDNGSLSYSRAGAFQTNKDNFVVTSDG 120 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG 191 ++ G + +Q+ + I + + S QG + + + P D Sbjct: 350 SNLSIDSTGVMFASFSNQQSRAIGQVAIASFANPQGLQQIGGTRWKESFASGIPGIDAPK 409 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V+ LE SN N E+ ++I + + I M I+ Sbjct: 410 TGTLGSVESNSLEASNVNLTQELVELIKAQSNYQANAKTISTESTIMQTIIQ 461 >gi|297538896|ref|YP_003674665.1| fagellar hook-basal body protein [Methylotenera sp. 301] gi|297258243|gb|ADI30088.1| fagellar hook-basal body protein [Methylotenera sp. 301] Length = 422 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 8/194 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISFVAS 61 SF GL+ A ++L + +N++N +TVGF+ + +F++V Q Sbjct: 2 SFQQGLSGLNAASKQLEVIGNNVANANTVGFKQSRAEFADVFANSLTGGGGTQIGIGTNL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ ST LD A+ G +F + + + +R+G+FK+ DG +V ++ K+ Sbjct: 62 STVAQQFTQGNVTSTNNSLDIAINGGGFFRMTNNGAVTYSRNGQFKMDKDGYIVDSASKH 121 Query: 122 PVLDMASVPIQIPQKDEI-FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 A I + + + + + AT + + Sbjct: 122 LTGYAADTTGAIQKGAPVDLKIN-----TADLQPKATAKIVGLVNLDSRKATPAVTPFSP 176 Query: 181 IPPTPLEDLSGVTV 194 PT D + VTV Sbjct: 177 TDPTTYTDSTAVTV 190 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS---QKGK--VIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVT 193 FN G G I+ G+ + + L S G + + TPL + Sbjct: 311 FNTGADGIITGRYSNGQSRALGQVVLSSFANPNGLQSLGGNAWSESSTSGTPLTGVPNTG 370 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ +EDSN + E+ MI + + + I ++ + + Sbjct: 371 TLGVLQSSAVEDSNTDLTAELVNMITAQRYYQANAQTIKTQDQVLQTLVN 420 >gi|91792664|ref|YP_562315.1| flagellar hook protein FlgE [Shewanella denitrificans OS217] gi|91714666|gb|ABE54592.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 455 Score = 128 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +T+GF+ + +F++V N V + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNTIGFKESRAEFADVYANSIFSNGKTAVGGGVTT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFA----LESPRGIILTRDGRFKVTDDGSLVSA 117 + GS T LD A+ G +F +++ + +R G FKV + +V + Sbjct: 62 TQVAQQFSQGSLQFTSNALDLAISGGGFFVTSANIDTSQDQSFSRAGAFKVDSNNYMVDS 121 Query: 118 SGKY 121 +G + Sbjct: 122 AGNF 125 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 ++G G + G + A + L QG + N+ ++ P Sbjct: 342 TNVSIGSDGLVIAKYSNGSTVPLARVALVRFANEQGLTQVGNTSWKASLDSGPALAGEAN 401 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ LE SN + E+ +I + F + + ++ N ++ + I I Sbjct: 402 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTILQI 454 >gi|218461961|ref|ZP_03502052.1| flagellar hook protein FlgE [Rhizobium etli Kim 5] Length = 316 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTVADN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLP-SSGGNYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F ++ P G +LTR G F+ D+G+LV+A+G Sbjct: 65 RQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFQKDDEGNLVNAAGFQL 124 Query: 123 VL---DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + D + + + D + V + GL ++ + G + + Sbjct: 125 MGYSYDSGAPAVVVNGFDGLVPVN-----------VNQEGLTAIASTSGVFKGNLDSNAK 173 Query: 180 NIPPTPLE 187 P P Sbjct: 174 VAPVAPAT 181 >gi|192290239|ref|YP_001990844.1| hypothetical protein Rpal_1843 [Rhodopseudomonas palustris TIE-1] gi|192283988|gb|ACF00369.1| protein of unknown function DUF1078 domain protein [Rhodopseudomonas palustris TIE-1] Length = 273 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 101/268 (37%), Gaps = 43/268 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + A ++ N++N T F+ FS+++ Q V Sbjct: 6 ALWTATTGLQAQSAAFENISGNVANAQTTAFKATNTAFSDLIYP-----PQVSDTVLWRS 60 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------------IILTRDGRFKVTD 110 + + GS A+ G+ +F +E+P G TR G F + Sbjct: 61 VLTNGQQGSISYDPVSTHMAIGGEGYFTVEAPSGVSASGQPTFSTSETTYTRRGDFDL-K 119 Query: 111 DGSLVSASGKY-------PVLDMAS--VPIQIPQKDEIFNVGE------------KGEIS 149 +G LV+ +G Y PV P+Q + ++G +G S Sbjct: 120 NGYLVNGAGYYLMGSQIDPVTGAVGSTGPLQFDTSTALPDLGVLQSLSVSSSGKLQGTYS 179 Query: 150 QKGKV-IATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 + V +A++ + S QGF+++ + G SP P ++ TV LE SN + Sbjct: 180 KGQTVDVASLSIASF-AGQGFMKQGSGGTFSPTPQSGPALYVNAGTVVGSALEASNVDIA 238 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSML 235 +M M+ Q +++ T ++ + + ML Sbjct: 239 DQMTTMVQAQQAYSACTRVVTASNEMML 266 >gi|289612565|emb|CBI60084.1| unnamed protein product [Sordaria macrospora] Length = 159 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 19/147 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-------------ISFVASGKEY 65 + +++N++N +T GF+ + F + I + V Sbjct: 1 MRVISNNLANVNTTGFKRDRASFEAMSYQIITAQGAASTQESRYATGLNLGTGVRIQGTA 60 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVL 124 + GS +TG LD A+EGD +F ++ P G + TR G F + +G LV+ G Y V+ Sbjct: 61 SIQTQGSLATTGNALDMAMEGDGYFQVQMPGGQLGYTRAGNFTRSAEGLLVTTEG-YQVM 119 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK 151 I +P+ +G G +S Sbjct: 120 PG----ITLPEGATSITIGNDGTVSAT 142 >gi|146296289|ref|YP_001180060.1| hypothetical protein Csac_1266 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409865|gb|ABP66869.1| protein of unknown function DUF1078 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 484 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S + + A + R+ + DN++N +TVGF++ +V F+ V ++ Sbjct: 1 MMRSMFSSITSLRAHQTRMDVIGDNIANVNTVGFKSSRVTFASVFASVIKAASAPDTTSG 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGR 105 ++ Q V+ ++ GS T D A+EGD +F + R TR G Sbjct: 61 RGGSNPMQIGLGVSVASVDMNMTRGSLQRTDNPTDLAIEGDGFFVVGGDGRAPRFTRAGN 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQ 132 F + G+LV+A+G VL + P+ Sbjct: 121 FSLDKMGNLVTANG-LNVLGWMADPVN 146 Score = 81.6 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + FN+ G+I+ ++I + + + G R ++ + TP Sbjct: 370 QGFNIDATGKITGIYSNGLNQLIGQIAIATFANPAGLQRIGDNLYINTVNSGDPEIGTPG 429 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ +G LE SN + E MI + + + +I +++ + + + Sbjct: 430 SGSRG-TISQGTLEMSNVDLAKEFTDMIVTQRGYQANARVITASDELLQDLVN 481 >gi|330811235|ref|YP_004355697.1| flagellar hook protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379343|gb|AEA70693.1| Putative flagellar hook protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 432 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--SFVAS 61 SFNIGL+ A ++L +N++N T GF++ + +F +V A K K + V Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFEDVYSATKLGSGSKTVGNGVRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G +TG LD ++G +F L + + TR G FK +G + ++ G Sbjct: 62 ANVSQQFGQGDVNNTGNVLDMGIQGQGFFVLSNDGSLSYTRAGTFKTDKEGYITNSDGTS 121 Query: 122 PVLDMA 127 + Sbjct: 122 RLQGYG 127 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 10/115 (8%) Query: 135 QKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLED 188 + + G + K I + L S QG + P D Sbjct: 316 GQITNLTIDGSGVLLANFSNNQTKPIGQLALASFTNEQGLQPVGGTSWKETFASGIPGYD 375 Query: 189 LSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE+SN N E+ ++I + + I M I+ Sbjct: 376 APQTGTLGSIVSNSLEESNVNLTNELVELIKAQSNYQANAKTISTQSTIMQTIIQ 430 >gi|32267203|ref|NP_861235.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] gi|32263256|gb|AAP78301.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] Length = 718 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 21/168 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G++ A + L ++N++N +TVGF+ + F +++ I KN + Sbjct: 1 MLRSLWSGVSGMQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGL 60 Query: 53 DQKISF-----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGR 105 + F V G+ +T + D A+EGD +F + RG TR+G Sbjct: 61 GGQNDFSVGLGVGIDATTKVFSQGNTQNTDVKTDVAIEGDGFFIISPDRGTTHNYTRNGE 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI-----FNVGEKGEI 148 F +G+LV+ +G Y V P++ + + F V G + Sbjct: 121 FLFDANGNLVT-TGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPV 167 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVTVKRGF----LEDSNANSMYE 209 +A + L + + G + P+ + + G LE SN + Sbjct: 626 LAQVALANFANNAGLQAEGGNVYSQTGNSGEPMVGAANTGRRGGVSGSKLEMSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + Q+I + + F + + + +++ + + Sbjct: 686 LTQLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|301168104|emb|CBW27690.1| putative flagellar hook protein [Bacteriovorax marinus SJ] Length = 426 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 3/147 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + SFNIG+ A+ Q + + DN++N T GF++ + +F +V+ ID F A Sbjct: 3 ILRSFNIGVTGLNAVGQGMGVIGDNIANAGTNGFKSSRAEFQDVLATSLKGIDGGDQFGA 62 Query: 61 SGKEY---LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 K G T D A+ GD +F + +P G TRDG F +G LV++ Sbjct: 63 GTKLAHIKTLMTQGDVARTDNITDLAVNGDGFFKVNAPFGKGFTRDGSFHFNKEGELVNS 122 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGE 144 G + A +I K+ +G Sbjct: 123 DGYQVIGFEADETGKITNKEAPVKLGS 149 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 12/100 (12%), Positives = 35/100 (35%), Gaps = 9/100 (9%) Query: 148 ISQKGKV--IATMGLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFL 199 + G+ I+ + + + ++G + + + P E G V + Sbjct: 325 VYDNGESRDISQIAVAKFENNEGLFKVGKNLMKESRNSGEAAMGKPGESGRG-EVLSKSI 383 Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E SN + E ++ + F + + ++ + + + Sbjct: 384 ELSNVDIANEFVGLMTAQRNFQANAKTLTTADEMLQQVLN 423 >gi|317051681|ref|YP_004112797.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] gi|316946765|gb|ADU66241.1| flagellar hook-basal body protein [Desulfurispirillum indicum S5] Length = 1341 Score = 127 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 12/184 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + ++ + + +N+SN +T G++ + F++V+ V Sbjct: 1 MLQSMYAGVSGLVNHQRSMDIIGNNISNVNTFGYKKARAGFADVMSISIGGSGVNPMQVG 60 Query: 61 SGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 G S G ++ D A+ G +F + + TR+G F +G +V+ Sbjct: 61 IGTRVNSTNLIFSQGGIEASNKSTDMAIAGRGFFVVSNGAQNFFTRNGNFTFNKEGMMVT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G MA+ + F + + G + +G+ S V + Sbjct: 121 PDGLVMQGRMATQ-----NQYGEFTINPT---TVVGNIQIPVGIKSPASPTSNVELGGNL 172 Query: 177 ISPN 180 + Sbjct: 173 NAEA 176 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG 191 E +++ E G + + +A + L QG + NS S N P G Sbjct: 1227 EDYSIDENGIVYGLFSNDLSRPLAQLTLADFTNPQGLSKVGNSLFVSTNASGQPNYAAPG 1286 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ LE SN + E QMI + + F + + +I ++ + E + Sbjct: 1287 SAGFGTIISNSLEMSNVDLSMEFTQMIIVERGFQANSRIISTSDSMIQEVLN 1338 >gi|329898288|ref|ZP_08272371.1| Flagellar basal-body rod protein flgF [gamma proteobacterium IMCC3088] gi|328920853|gb|EGG28296.1| Flagellar basal-body rod protein flgF [gamma proteobacterium IMCC3088] Length = 253 Score = 127 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 16/237 (6%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 +A+ + Q + + ++N TVGF+ +E V + VA+ +++ Sbjct: 5 YTAMASVKQVNQARAQTTNMLANVSTVGFKESYRHATESVKVASTAFETTYQPVAASEDF 64 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYPVL 124 +S G STG +LD ++ +++ I TR G +V + G L +G+ V Sbjct: 65 ISLRAGPMQSTGRKLDIFMQAQTVLGVQASNEQIAFTRRGDLRVNEIGQLELGTGQLVV- 123 Query: 125 DMASVPIQIPQKDEIFNVGEKGEI--------SQKGKVIATMGLYSVDMSQGFVRRENSG 176 D A PI +P + +G G + G + + L + RR + Sbjct: 124 DDAGSPISVPLG-QDLEIGADGTVVAYDPELPEAPGAEVGRLMLRDASATV-LARRLDGL 181 Query: 177 ISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 P D + G LE S+ N + Q++ + F S LI E Sbjct: 182 FEPATQAGSGGDFESGPTPPEILSGALEGSSVNVSEMLTQLLDYNRSFESRIRLIKE 238 >gi|152965624|ref|YP_001361408.1| hypothetical protein Krad_1658 [Kineococcus radiotolerans SRS30216] gi|151360141|gb|ABS03144.1| protein of unknown function DUF1078 domain protein [Kineococcus radiotolerans SRS30216] Length = 462 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 12/151 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDI 52 M S G++ + + + V +N++N +T GF++ V F++ + + Sbjct: 1 MLRSMFSGVSGLRSHQTMMDVVGNNIANVNTAGFKSSSVVFADTLSQLTKAAGAPTDAAA 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + V G + GS +TG D L+GD FA++ G +R+G F + Sbjct: 61 GTNPAQVGLGVRVNAITQNMTQGSAQATGKSTDLMLQGDGMFAIQQGDGTFYSRNGSFTL 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEI 139 +GS+V+ G Y + A + +I Sbjct: 121 DANGSVVTNDGGYVMGWKADAAGAVNTNGQI 151 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 13/124 (10%) Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGIS-P 179 PI F+ G G I+ + + + + S + S G + NS S Sbjct: 339 ADGAPI---GTLTGFSFGTDGVITGNYSNGYKQTLGQIAIASFNNSAGLRKEGNSLYSVS 395 Query: 180 NIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P+ ++G ++ G LE SN + E +I + F + + +I +++ + Sbjct: 396 TNSGQPVFGIAGSAGRGSILAGSLEMSNVDLSAEFTNLILAQRGFQANSKVITSSDELLQ 455 Query: 236 EAIR 239 + + Sbjct: 456 DLVN 459 >gi|224437581|ref|ZP_03658537.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 718 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 21/168 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S G++ A + L ++N++N +TVGF+ + F +++ I KN + Sbjct: 1 MLRSLWSGVSGMQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGL 60 Query: 53 DQKISF-----VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGR 105 + F V G+ +T + D A+EGD +F + RG TR+G Sbjct: 61 GGQNDFSIGLGVGIDATTKVFSQGNTQNTDVKTDIAIEGDGFFIISPDRGTTHNYTRNGE 120 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEI-----FNVGEKGEI 148 F +G+LV+ +G Y V P++ + + F V G + Sbjct: 121 FLFDANGNLVT-TGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPV 167 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVTVKRGF----LEDSNANSMYE 209 +A + L + + G + S P+ + + G LE SN + Sbjct: 626 LAQVALANFANNTGLQAEGGNVFSQTGNSGEPMIGAANTGRRGGVSGSKLEMSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + Q+I + + F + + + +++ + + Sbjct: 686 LTQLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|190890382|ref|YP_001976924.1| flagellar hook protein [Rhizobium etli CIAT 652] gi|190695661|gb|ACE89746.1| flagellar hook protein [Rhizobium etli CIAT 652] Length = 433 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLP-SSGGNYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F ++ P G +LTR G F D+G+LV+A+G Sbjct: 65 RQAVSDQGDISYTTSTTDLAISGDGFFIVQGPDGTPVLTRAGDFTKDDEGNLVNAAGFQL 124 Query: 123 VL---DMASVPIQIPQKDE--IFNVGEKG 146 + D S + + D NV + G Sbjct: 125 MGYSYDSGSPAVVVNGFDGLVPVNVSQDG 153 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 36/171 (21%) Query: 103 DGRFKVTDDGSLVSASGKYPVLDM-----------------------ASVPIQIPQKDEI 139 G +G + ++SG + D + Q + Sbjct: 262 TGSLTFDANGKM-TSSGAVTINDGVTGQSIAMDFSGLTQLGADFSGTGTPNGQAATPVKD 320 Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRENSGISPNIPPTPLED 188 + G + K K + + L +V G V N + P + Sbjct: 321 VTIDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSANGQSGVTVTGFPQTN 380 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+K G LE SN + E+ +MI + + + + + M + Sbjct: 381 GLG-TIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 430 >gi|30248322|ref|NP_840392.1| flagellar hook protein FlgE [Nitrosomonas europaea ATCC 19718] gi|30138208|emb|CAD84216.1| Flagella basal body rod protein [Nitrosomonas europaea ATCC 19718] Length = 410 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 2/125 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVASG 62 F GL+ A +L +N++N +TVGF+ + +F++V A+ +Q Sbjct: 2 GFQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFADVYANALGGGRNQIGIGTQLA 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 G+ T LD A+ G+ +F +++ I TR+G+F + DG LV+AS Y Sbjct: 62 AVAQEFNQGNVTPTNNPLDVAITGNGFFRMDNNGSISFTRNGQFHLDKDGFLVNAS-NYN 120 Query: 123 VLDMA 127 V Sbjct: 121 VTGFG 125 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 39/111 (35%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLED 188 +++ + G+I + + + L G ++ TP Sbjct: 300 YSISDDGQIRASYSNNVTRTVGQLVLAGFSNPNGLKPLGSNQWGETAESGLPLVGTPETG 359 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +++ +E+SN + E+ +I + + + I+ + M + Sbjct: 360 VLG-SLQSSAVEESNVDLTTELVTLIMTQRVYQANAKTIETQDAVMQTIMN 409 >gi|258621049|ref|ZP_05716083.1| flagellar hook protein [Vibrio mimicus VM573] gi|258625277|ref|ZP_05720185.1| flagellar hook protein [Vibrio mimicus VM603] gi|262170825|ref|ZP_06038503.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] gi|258582450|gb|EEW07291.1| flagellar hook protein [Vibrio mimicus VM603] gi|258586437|gb|EEW11152.1| flagellar hook protein [Vibrio mimicus VM573] gi|261891901|gb|EEY37887.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] Length = 434 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 22/191 (11%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 I L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YISLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T LD + G +FA+ P+ LTR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDKIVPQQNELTRNGAFHLDKNSYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQK----DEIFNVGEKGEISQKGKVIATMGLYSVD 164 ++ VL PI IP + + N+ + G++ L+ + Sbjct: 123 EFLLGYEVNPDSGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPANGELKDP-TLFDIT 181 Query: 165 MSQGFVRRENS 175 + + R +S Sbjct: 182 DPETYNRTTSS 192 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLE 187 I + + G+ + + L V QG ++ + E Sbjct: 323 IDFDENGSVLATYSNGQ----NTTLGRVALVRVANEQGLDKKGGTQWDATQFSGDKIWGE 378 Query: 188 DLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ Sbjct: 379 SNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQ 432 >gi|89895710|ref|YP_519197.1| hypothetical protein DSY2964 [Desulfitobacterium hafniense Y51] gi|89335158|dbj|BAE84753.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 383 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ + ++ + +N++N +T GF+ +V FS ++ N Sbjct: 1 MLRSLYSAISGLKNHQIKMDVIGNNIANVNTTGFKRSRVTFSTMLSQTMKGAGSPSANQG 60 Query: 53 DQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + + G S + GS STG + D ++G +F L++ + +R G F Sbjct: 61 GTNPAQIGLGSMVSSIDQIMTPGSSQSTGKDTDMMIQGKGFFVLQNNGETVYSRAGAFTQ 120 Query: 109 TDDGSLVSASGKYPVLD 125 DDG+L V+ Sbjct: 121 DDDGTLTEPGTGAKVMG 137 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 20/139 (14%) Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDM 165 + + G+Y D +P+ F+V KG I+ +VI + + S Sbjct: 246 ITNLDGEYA--DGTDIPL---ATLTSFSVDSKGAITGVYSNGEASASRVIGQVAIASFSN 300 Query: 166 SQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G + NS + + ED G + +E SN + E MI + Sbjct: 301 DAGLLNLGNSFYAASNNSGQASIGGAGEDGRG-NIVPSTVEMSNVDLSQEFTDMIVTQRG 359 Query: 220 FNSITTLIDENEKSMLEAI 238 F + + +I ++ + E I Sbjct: 360 FQANSRVITVSDSLLQELI 378 >gi|206895667|ref|YP_002246664.1| flagellar hook-basal body complex protein, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738284|gb|ACI17362.1| flagellar hook-basal body complex protein, putative [Coprothermobacter proteolyticus DSM 5265] Length = 227 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 96/239 (40%), Gaps = 15/239 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +++ L L + + DN+ + T G++ F+ + Sbjct: 1 MLRGIYNAVSSNLMLLRAQDVIEDNLLHIQTPGYKQKNFAFTLTEQRPIVGLGNVSFGGL 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 Y+S E S TG LD A+ G + A+++ + R V + G LV+ G Sbjct: 61 LSYPYVSIEQASLEETGRNLDLAVSG-GFLAVDANGQRLWASSLRMLVDEQGYLVTPEG- 118 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y VL PI+ + +NV ++G I +++ + + V++ + + + Sbjct: 119 YRVLGKNG-PIKWNEN---YNVDQQGNILLNDQIVDSFLISDVNVQE---------VVND 165 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + S V + +LE SN + + ++ ++ + + + S ++ + ++ + I Sbjct: 166 RYFVGEQLQSNFRVFQTYLETSNVDEIGQVTALMTILRHYQSNVKVVQAEDAALAKIIN 224 >gi|89092136|ref|ZP_01165091.1| flagellar hook protein (FlgE)-like [Oceanospirillum sp. MED92] gi|89083871|gb|EAR63088.1| flagellar hook protein (FlgE)-like [Oceanospirillum sp. MED92] Length = 634 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKISF 58 FN + A L + +N++N+ TVGF+T + +F ++ + S Sbjct: 1 MAGFNTAVTGLKAASTDLDVIGNNIANSSTVGFKTSRTEFGDIYATAVVGAGSSNVAGSG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSA 117 V + G+ T LD A+ G +F L+ G TR G F++ DG +VS Sbjct: 61 VTVSDIAQDFQAGTIEFTNNNLDLAINGSGFFQLDDGQGGTTFTRAGAFQLDKDGFIVSK 120 Query: 118 SGKY 121 SGK+ Sbjct: 121 SGKF 124 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 6/96 (6%) Query: 151 KGKVIATMGLYSVDMSQGFVRRENSGISPNIPP-----TPLEDLSGVTVKRGFLEDSNAN 205 + + + + + + + G ++ + + P T++ LE SN + Sbjct: 540 QNQDLGVVAIATFENQSGLQPSGDTEWTATLTSGDAIVNPPGTGLNGTLRSAALEQSNVD 599 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ +I + F + + I+ ++ +AI I Sbjct: 600 LSAELVALIEAQRNFQANSKTIETQN-TVTQAILQI 634 >gi|262404540|ref|ZP_06081095.1| flagellar hook protein FlgE [Vibrio sp. RC586] gi|262349572|gb|EEY98710.1| flagellar hook protein FlgE [Vibrio sp. RC586] Length = 434 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 22/191 (11%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 I L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YISLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T LD + G +FA+ P+ LTR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDKMVPQQNELTRNGAFHLDKNSYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQK----DEIFNVGEKGEISQKGKVIATMGLYSVD 164 ++ VL PI IP + + N+ + G + L+ + Sbjct: 123 EFLLGYEVNPDSGDVLSYEPKPINIPPQFGKPKQTANIDLAANLPANGDLKDP-ALFDIT 181 Query: 165 MSQGFVRRENS 175 + + R +S Sbjct: 182 DPETYNRTTSS 192 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLE 187 I + + G+ + + L V QG ++ + E Sbjct: 323 IDFDENGSVLATYSNGQ----NTTLGRVALVRVANEQGLDKKGGTQWDATQFSGDKIWGE 378 Query: 188 DLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G +V G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 379 SNKGSFGSVSNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 432 >gi|255022066|ref|ZP_05294072.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] gi|254968552|gb|EET26108.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] Length = 416 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 8/153 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +N ++ A + L+T+ +N++N +TVGF+ +F ++ A + G Sbjct: 2 GYNTAISGLDAAQTDLNTIGNNIANVNTVGFKESNAQFGDLYAASLAGSAGASTTPGIGV 61 Query: 64 EYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ +TG LD A+ G +F + + + TR+G+F V+ +G L + +G Sbjct: 62 STVDLSQNFTQGNIQTTGNPLDMAINGPGFFIVNNNGTMDYTRNGQFHVSSNGVLEN-NG 120 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 PV VP + IS+ Sbjct: 121 DLPVQGFQPVP---GSNGRFSTILSNLTISESA 150 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLE 187 P +V GEI K I + L + QG + + PL Sbjct: 300 PGTYSSISVQSTGEIDANYTNGQKKAIGKVALANFANLQGLAPISGNLWSATATAGNPLV 359 Query: 188 DLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G ++ G +E SN + ++ MI Q + + T+ I ++ ++ Sbjct: 360 NSPGTAGLGVIQSGAVESSNVSLSSQLVDMIVAQQAYQANTSTIKTEQQDTQSLLQ 415 >gi|239815263|ref|YP_002944173.1| hypothetical protein Vapar_2278 [Variovorax paradoxus S110] gi|239801840|gb|ACS18907.1| protein of unknown function DUF1078 domain protein [Variovorax paradoxus S110] Length = 395 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S +G+ L + L +A+N +N +T GF++ ++F+++ + N S Sbjct: 1 MLESIYVGMTGLLGYSRGLRVIANNTANINTPGFKSSSLQFADMFYSGGNLGGGSTSQNR 60 Query: 58 -----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDD 111 +++ LS + G TG +LD A++G FAL+ G TR G+FK D Sbjct: 61 DQVGFGLSTAGTSLSFKQGELRQTGNDLDMAVDGQGLFALQDANGKTTYTRAGQFKFDAD 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 G+LVS V+ + + + + G++ G+ + + Sbjct: 121 GTLVSRVNGEKVMG-------LDDRGGLVAITLAGQMMSLGRPTSRV 160 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 11/114 (9%) Query: 134 PQKDEIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIP-----P 183 P G ++ G + A + L D ++ Sbjct: 277 PGALSGTTFDADGNLTLNYSNGSTVKGARLALARFDSPDAVGSLGDNQFEQLDENAWHLG 336 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 E G V G +E SN + E ++ + + + + + +I + E Sbjct: 337 VAGEGAFG-KVSAGRVEISNVDLSQEFSDLVIMQRGYQASSQIISTANDMLQEL 389 >gi|325982371|ref|YP_004294773.1| fagellar hook-basal body protein [Nitrosomonas sp. AL212] gi|325531890|gb|ADZ26611.1| fagellar hook-basal body protein [Nitrosomonas sp. AL212] Length = 423 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A L V +N++N +TVG++ + +F+++ + + V G Sbjct: 2 GFQQGLSGLSAASTNLDVVGNNIANVNTVGYKQSQAQFTDIFANSLDGAGSSRTQVGIGA 61 Query: 64 EYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G T LD A+ G +F + I +R+G+F++ +G L ASG Sbjct: 62 RVATVAQLFNQGDIAPTNNPLDIAINGQGFFRMSDNGVISYSRNGQFRLDGNGFLTDASG 121 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 F +G I K + + L S QG + + P Sbjct: 313 FTTSPEGIIQGNYSNGQNKTLGQVVLASFVNPQGLNPIGDGRWIETPSSGQPLVGEPNSG 372 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV ++ +E +N + E+ +MI + + + I+ + + + Sbjct: 373 TLGV-LQASAVESANVDLTSELVKMITAQRMYQANAKTIETQDAILQTLVN 422 >gi|304316900|ref|YP_003852045.1| fagellar hook-basal body protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778402|gb|ADL68961.1| fagellar hook-basal body protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 420 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S ++ A + + + +N++N +TVGF+ ++ F E+ + Sbjct: 1 MLRSMYSAVSGLKAHQAEMDVIGNNIANVNTVGFKASRMTFKEIFNQTIKGASAPQGSGG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G T D +++G+ +F + + + TR G F Sbjct: 61 GTNPQQVGLGVAIASIDTLFTNGGSQRTDNPTDLSIDGNGFFIVNNGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G LV+ G Y V+ Sbjct: 121 DSNGDLVTPDG-YKVMG 136 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + +VI + L +QG + N+ + P+ + Sbjct: 306 ESINIDQYGVVSGIYSNGRTQVIGQIALADFQNTQGLEKVGNTMFINTVNSGDPMIGAAN 365 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E MI + F + + +I +++ + + + Sbjct: 366 TGTRGTINPGTLEMSNVDLANEFANMITTQRGFEANSKVITTSDEILQDLVN 417 >gi|77460469|ref|YP_349976.1| flagellar hook protein FlgE [Pseudomonas fluorescens Pf0-1] gi|77384472|gb|ABA75985.1| putative flagellar hook protein [Pseudomonas fluorescens Pf0-1] Length = 443 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--SFVAS 61 SFNIGL+ A ++L +N++N T GF++ + +F +V + + K+ + V Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATAGFKSSRAEFEDVYSSTRLGSGSKVIGNGVRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 G +TG LD + G +F + + I TR G FKV ++G + + Sbjct: 62 ANVSQQFTQGDINNTGNVLDMGINGSGFFTMSNNGSISYTRAGTFKVDNNGFITNTD 118 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 10/115 (8%) Query: 135 QKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLED 188 + + G + K I + L S QG +G P D Sbjct: 327 GQITNLTIDGTGTLFANFSNNQSKAIGQVALASFTNEQGLQPIGGTGWKETFASGVPGYD 386 Query: 189 LSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V LE+SN N E+ +I + + I M I+ Sbjct: 387 APKTGTLGEVVSNSLEESNVNLTNELVDLIKGQSNYQANAKTISTQSTIMQTIIQ 441 >gi|90579909|ref|ZP_01235717.1| flagellar hook protein [Vibrio angustum S14] gi|90438794|gb|EAS63977.1| flagellar hook protein [Vibrio angustum S14] Length = 467 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 S NI L+ A ++ L+T ++N++N +T GF+ + +F +V N V + Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSNSIFSNAKTTTGGGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSA 117 GS I T LD + G +FA+ P LTR+G F + ++ LV++ Sbjct: 62 STVAQQFHEGSSIYTNNPLDLRVSGSGFFAVADNKNEPANNNLTRNGAFHLNNENELVNS 121 Query: 118 SG----KYPV 123 G YPV Sbjct: 122 EGKFLLGYPV 131 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 ++ +G I GK V+ + L V QG + + + Sbjct: 354 SKVDIDPEGNILASYSNGKDIVVGRVALARVSNEQGLAQLGGTLWNTTQESGQAIWGDAS 413 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S +VK G LE SN + E+ +I + F + + +D N + ++ Sbjct: 414 QGSFGSVKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQLQQNILQ 465 >gi|319787121|ref|YP_004146596.1| flagellar hook-basal body protein [Pseudoxanthomonas suwonensis 11-1] gi|317465633|gb|ADV27365.1| flagellar hook-basal body protein [Pseudoxanthomonas suwonensis 11-1] Length = 406 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 SFN L+ A L+ ++N++N++TVGF++ + +F+++ + + S V Sbjct: 2 SFNASLSGINAANADLNVTSNNIANSNTVGFKSSRAEFADLFSSTSYGLASNAVGSGVKV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LDFA++G+ F + TR G F+ + G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRSLDFAIDGEGLFTVSKNGDTFYTRAGNFQPDNRGFVVTPDG 119 Score = 68.5 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 +V E G + + + L + QG N+ P Sbjct: 293 TTIDVAEDGVVYARYSNGDDVALGQIVLTNFVNPQGLQAVGNNMWAATHSSGTPRSGAPD 352 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE S + ++ MI + F + +I +++ I Sbjct: 353 SSDFG-RIQAGALEASTVDLTEQLVNMITAQRNFQANAQMISTQDQATQTVIN 404 >gi|239628984|ref|ZP_04672015.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519130|gb|EEQ58996.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 541 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 15/134 (11%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDIDQKISFVASGK 63 A + +L + +N++N +T GF++ + +F +V N S V G Sbjct: 1 MQAHQTKLDVIGNNIANVNTYGFKSSRARFQDVYYQTLQSATSGDNNRGGTNASQVGYGA 60 Query: 64 EY----LSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-DDGSLVSA 117 + L+ E + STG +D A+ G+ +F + G I TR G ++ G+LV A Sbjct: 61 QLAGIDLNMERSALQSTGRPMDVAITGEGFFQVMDSDGNIFYTRAGNLQLDYKSGNLVDA 120 Query: 118 SGKYPVLDMASVPI 131 +G Y VL + P+ Sbjct: 121 NG-YTVLGVTGDPL 133 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 12/127 (9%) Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQK----GKV-IATMGLYSVDMSQGFVRRENSGIS 178 L S + D + G I GK+ I + L + D G NS Sbjct: 413 LTDGSAGGTVSLSDAGVTILANGIIEANHPNLGKIQIGRIDLVTFDNPYGLEGVGNSYFK 472 Query: 179 PNIPPT------PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 ED +G +K LE SN + E MI + F + + +I ++ Sbjct: 473 ATGNSGDAKACKAGEDGTGA-LKTSSLEMSNVDISTEFADMIVTQRGFQANSRIITVSDS 531 Query: 233 SMLEAIR 239 + E + Sbjct: 532 ILEELVN 538 >gi|291334312|gb|ADD93973.1| flagellar hook protein [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 376 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 7/133 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L + ++T ++N++N + GF+ + +F ++ G+ + + A+ Sbjct: 2 SFYTALTGLKGAQTDIATTSNNIANVGSSGFKKSRAEFGDIFGSTPLQTNTVGAGTATKS 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSASG- 119 G+ + LD A+ G +F L+ + + TR+G F V D G +V ++G Sbjct: 62 IKQQFSQGNISQSTNTLDMAVSGQGFFTLKGGGNAGQTVFTRNGSFSVNDAGFIVDSNGQ 121 Query: 120 ---KYPVLDMASV 129 YPV + +V Sbjct: 122 FLLGYPVDNGGAV 134 >gi|291287005|ref|YP_003503821.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290884165|gb|ADD67865.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 209 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 99/242 (40%), Gaps = 33/242 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G A + L A+N++N +T F++ ++ +E+ V+ Sbjct: 1 MMQGLYTGANAISVYKNSLINTANNVANINTPYFKSNTLQLNEMEQ----------GGVS 50 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 ++++ IS+G LDF ++G F LE G TR+G F + +G +V + G+ Sbjct: 51 ISSIRQNQDLSYTISSGRTLDFVIDGSGQFRLEDNNGTSYTRNGVFYLDAEGDVVDSGGR 110 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + D+ ++ + E +VGE G + G+ + +Y S G EN + Sbjct: 111 KLLEDV----VKPGESAESLSVGEDGSFTVDGEFRGKIDVY---DSYGNKIPENLYM--- 160 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 ++ G LE S+ + E+ MI F++ T+ + + + + Sbjct: 161 -------------LRSGMLEVSDVDYAREVVDMIVTKNAFSANTSSVRTYDDMLGLIVNL 207 Query: 241 IA 242 + Sbjct: 208 VG 209 >gi|254438850|ref|ZP_05052344.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198254296|gb|EDY78610.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 255 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 33/253 (13%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG---KEYLSKEVGSFIS 75 +S V++N++N T FR FS++ A + ++S S E GS + Sbjct: 4 ISVVSNNVANAGTTAFRKSTANFSDLYTAASAESASRLSLGVGSVVETTRQSGEQGSLME 63 Query: 76 TGTELDFALEGDAWFALESPRGII-------LTRDGRFKVTDDGSLVSAS-----GKYPV 123 L+ AL G+ F + G TRDG F + +G L +++ G + Sbjct: 64 RDGVLNLALIGNGMFVSAASAGDAQPSQLLTFTRDGEFALDKNGVLRTSTNDFVLGYDGL 123 Query: 124 LDMASVPIQIP------QKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRR 172 +++P + G + S++ ++ + + + + Sbjct: 124 GGTELGQLEVPFQSVNGSTLTALEINASGVMRGTYGSEEPVILGQIAIGAFPNVTALRQL 183 Query: 173 ENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +D G V+ G LE SN N E+ MI Q+F+ + + Sbjct: 184 GMGRFQATEEAGGLMLGVSGQDGFG-KVQTGALESSNVNLTTELTSMIQAQQQFSGSSRI 242 Query: 227 IDENEKSMLEAIR 239 + + + R Sbjct: 243 LQAYSDMIEKLTR 255 >gi|167034944|ref|YP_001670175.1| flagellar hook protein FlgE [Pseudomonas putida GB-1] gi|166861432|gb|ABY99839.1| flagellar basal body FlaE domain protein [Pseudomonas putida GB-1] Length = 440 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 12/160 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNIGL+ A + L+ +N++N T GF++ + +F++ + V +G Sbjct: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKNTVGTGV 61 Query: 64 EYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + G+ TG LD A++G+ +F + I TR G F DG +V+ASG Sbjct: 62 KTAAVSQLFTPGNINGTGQALDMAIDGNGFFVMSDNGSKIYTRAGAFYSDKDGYVVNASG 121 Query: 120 ----KYPVLDMA----SVPIQIPQKDEIFNVGEKGEISQK 151 Y V V + G+IS+ Sbjct: 122 SKLQGYAVDANGKITQGVLTDLQIDTSNLTPNPTGKISEN 161 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN----SGISPNIPPTPLEDLS 190 + + G + KVI + + + QG + +P D Sbjct: 329 LTIDQSGNMFANFTNGQDKVIGQVAIANFANLQGLTPIGGTNWKESYASGVPVIGAPDTG 388 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + G LEDSN + E+ +I + + I M I+ Sbjct: 389 TLGQITGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQTIIQ 438 >gi|299822273|ref|ZP_07054159.1| flagellar hook protein FlgE [Listeria grayi DSM 20601] gi|299815802|gb|EFI83040.1| flagellar hook protein FlgE [Listeria grayi DSM 20601] Length = 411 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 28/181 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + ++ A +Q LS ++N++N +T G++ V F++++ Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKRQSVVFNDLLYQNTLGSVTSGLYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + S G GS +TG D AL+G+ +F S + TRDG F Sbjct: 61 TNPMSFGSGTKIGAVITDYTAGSPTATGRNKDAALQGNGFFIAGDRSGGNAVYTRDGSFA 120 Query: 108 VTDDGSLVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 V+ D L + SGKY V+D PIQIP I GE ++ K+ Sbjct: 121 VSSDNFLTTQSGKYVMGYATDKNGNVIDGNLRPIQIPLNSAIP-----GEATKNAKLSGN 175 Query: 158 M 158 + Sbjct: 176 I 176 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 39/183 (21%) Query: 96 RGIILT--RDGRFKVTDDGSLVSA------------SGKYPVLDMASVPIQIPQKDEIFN 141 G LT R G G L +A GK D + + +++F+ Sbjct: 226 DGNALTPARTGTLNYNAQGELTNAAALENINVNQTIQGKNVSFDFDLSKMTNYETEQVFS 285 Query: 142 VGEKG---------EISQKGKV-----------IATMGLYSVDMSQGFVRRENS----GI 177 G ++ G + +A +G+ + G V+ N G+ Sbjct: 286 PSSDGKGAATVKDFAVTDAGYIAVSYSDGTIIPVAQLGVATFSNVDGLVKNGNGEYTPGL 345 Query: 178 SPNIPPTPLEDLSGVTVKRGF-LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 S P + +G G LE SN + E ++ F T +I + M + Sbjct: 346 SSGDPVFGVAGQNGAGGISGASLEGSNVDLSQEFVNLMTYQSGFQGNTKVIRVADDVMKQ 405 Query: 237 AIR 239 + Sbjct: 406 IVN 408 >gi|224825164|ref|ZP_03698270.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] gi|224602835|gb|EEG09012.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] Length = 419 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A ++L V +N++N T GF+ + +F+++ G+ + + + Sbjct: 2 GFQQGLSGLAAASKQLEVVGNNVANASTNGFKRSRSEFADMYGSSLYGVSNAQAGIGVRT 61 Query: 64 EYLS--KEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLVSA 117 +S + G+ STG LD A+ G +F L+SP +R+G F+V +G LV+ Sbjct: 62 AEVSQLFDQGNINSTGNNLDLAISGKGFFVLKSPSAASSQDAYSRNGAFQVDANGYLVNG 121 Query: 118 SGK 120 G Sbjct: 122 DGY 124 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 13/118 (11%) Query: 134 PQKDEIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN-------SGISPNI 181 P N+ +G I GK + + L + QG S Sbjct: 301 PGTLTSTNINNQGIIEATYSNGKTVAIGQVALANFTNVQGLQSMGGNLWKDVASSTGGAK 360 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P+ G ++ LE SN + E+ MI + + + I + + I Sbjct: 361 VGAPMSADLG-EIQSQALEQSNVDLNSELVDMIVAQRFYQANAQSIKTEDTILQTLIN 417 >gi|269103190|ref|ZP_06155887.1| flagellar hook protein FlgE [Photobacterium damselae subsp. damselae CIP 102761] gi|268163088|gb|EEZ41584.1| flagellar hook protein FlgE [Photobacterium damselae subsp. damselae CIP 102761] Length = 449 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 S NI L+ A ++ L+T ++N++N +T GF+ + +F +V N V + Sbjct: 2 SVNIALSGLGAAQKDLNTTSNNIANANTYGFKESRAEFGDVYSNSIFSNAKTSTGGGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSA 117 GS + T LD + G +FA+ P LTR+G F + + LV++ Sbjct: 62 STVAQQFHEGSSLYTNNPLDLRISGAGFFAVADNKAEPANNSLTRNGAFHLNNQNELVNS 121 Query: 118 SGKYPVL 124 GK+ + Sbjct: 122 EGKFLLG 128 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPL 186 ++ G + K +++ + + V QG + + + Sbjct: 336 SKVDIDPDGNVLASYSNGKDRIVGRVAMARVSNEQGLSQLGGTLWNVTQESGDAVWGDAS 395 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +K G LE SN + E+ +I + F + + ++ N + ++ Sbjct: 396 QGSFGA-IKSGTLEQSNIDMTQELVDLITAQRNFQASSRALEVNNQLQQNILQ 447 >gi|148554189|ref|YP_001261771.1| flagellar basal body FlaE domain-containing protein [Sphingomonas wittichii RW1] gi|148499379|gb|ABQ67633.1| flagellar basal body FlaE domain protein [Sphingomonas wittichii RW1] Length = 435 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 73/210 (34%), Gaps = 21/210 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-NDIDQKISFVASG 62 SF L+ A + L+ +++N++N T GF+ +F ++V + Sbjct: 2 SFYTALSGLKASQTDLAVISNNIANVGTTGFKRSGTEFGDLVSSSPMQSSGIAGQGTRLR 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSASG 119 G S+ LD A+ G +F S + TR+G F V + LV +SG Sbjct: 62 GIAQQFTQGGLESSERSLDLAISGQGFFVTRASNSNGQVSYTRNGAFSVDANRFLVDSSG 121 Query: 120 KY----PVLDMASVP---------IQIPQKDEIF----NVGEKGEISQKGKVIATMGLYS 162 Y P +V IQ+P + G V +T +YS Sbjct: 122 AYLQALPTDTKGNVTATGLSSARSIQLPLTSGTSKATQTIDLSVTFPSAGDVPSTRAIYS 181 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 F R + + + + T + Sbjct: 182 TTNPYKFDRTDPNSYNQSTTTTVYDAAGNA 211 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 13/117 (11%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 + +VG G I + + + L + +G + +S I Sbjct: 321 DNVSVGADGLIVATFSNGDSQALGKIILANFSNPEGLRQLGDSKWGATGLSGEPIIGEAS 380 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + +G ++ G LE +N + E+ +I + F++ I E +M + I N+ + Sbjct: 381 SNGTG-QIQSGALEQANVDITEELVALIQAQRNFSANAKTI-EAANTMTQTIVNLRT 435 >gi|323705438|ref|ZP_08117013.1| fagellar hook-basal body protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535340|gb|EGB25116.1| fagellar hook-basal body protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 424 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 13/137 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++ A + + + +N++N +TVGF+ ++ F E+ Sbjct: 1 MLRSMYSAVSGLKANQAEMDVIGNNIANVNTVGFKASRMTFKEIFNQTIKGASAPQDNGG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q VA G T D +++G+ +F + + + TR G F Sbjct: 61 GTNPQQIGLGVAIASIDTLFSNGGSQRTDNPTDLSIDGNGFFIVNNGGANLYTRAGNFSF 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G LV+ G Y V+ Sbjct: 121 DSNGDLVTPDG-YKVMG 136 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E N+ + G +S + +VI + L +QG + N+ + P+ + Sbjct: 310 ESINIDQYGVVSGIYSNGRTQVIGQIALADFQNTQGLEKVGNTMFINTVNSGDPMIGAAN 369 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E MI + F + +I +++ + + + Sbjct: 370 TGTRGTIDPGTLEMSNVDLANEFANMITTQRGFEANAKVITTSDEILQDLVN 421 >gi|95929857|ref|ZP_01312598.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] gi|95134153|gb|EAT15811.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] Length = 548 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 16/197 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKIS 57 +Q+S G++ A L+ + +N++N++T+GF++ + FS+++ A Q Sbjct: 3 IQSSLFSGVSGLNANGNALTVLGNNIANSNTIGFKSSRTIFSDLLSAEIAGSGGASQVGR 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLV 115 G+F +T + D A+EG +F + P I TR G F + G+LV Sbjct: 63 GAGLSTVDNIFSQGTFETTESNTDLAIEGPGFFMVSDPGEASIYYTRAGAFNFDETGTLV 122 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK----GKVIATMGLY-SVDMSQGFV 170 + G Y V + E I + + L +++ + ++ Sbjct: 123 NPEG-YAVQGY-----YLNDAGETVGDLTDLTIETRSFSPANPTTKISLATNLNANDPYL 176 Query: 171 RRENSGISPNIPPTPLE 187 + +SP P + Sbjct: 177 GTQGDAVSPFDVNDPAD 193 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 9/110 (8%) Query: 139 IFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV 192 V G I G+ +A + L G + N+ + + T + G Sbjct: 436 SLTVDNDGNILGNYSNGEPRKLARIALAKFSNPVGLAKAGNNLYEATDDSGTAIVGTVGS 495 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E +MI + F + + +I ++ + E I Sbjct: 496 GVGKIFTNSLEMSNVDLAQEFVKMITTQRGFQANSKIITTTDELLGELIN 545 >gi|302185583|ref|ZP_07262256.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae 642] Length = 445 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ +++F++ S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRIEFADQYAQSIRGTSGGTSVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + GS + TG LD A+ G+ +F L + + TR G F DG +V++SG Sbjct: 62 TAAVSQQFSQGSLTTGTGNSLDLAINGNGFFMLSNKGDSLYTRAGAFHTDKDGYVVNSSG 121 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 69/226 (30%), Gaps = 39/226 (17%) Query: 49 KNDIDQKISFVASGKEYLSKEVGSFI-STGT-------ELDFALEGDAWFALES------ 94 +I S V GS I +TGT + A+ D F + + Sbjct: 222 GRNISNPASTVPDANNLTFDSSGSLIINTGTTPTSPSPSANVAVNADGTFKVTNWVPAIQ 281 Query: 95 ----------PRGIILTRDG-RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 P G G + +T SA+G+ QI + +V Sbjct: 282 TGTGNSATWGPNGAAGVASGIQLDMTASTQTASATGRSAQAQNGYAAGQI----KDMSVD 337 Query: 144 EKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSG----ISPNIPPTPLEDLSGVTV 194 G++ G+ VI + L S QG + S IP T + Sbjct: 338 ASGKLFASYTNGQSKVIGQVSLTSFANVQGLAPAGGTNWRETFSSGIPGTGAPQSGTLGY 397 Query: 195 KRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G LE+SN + E+ +I + + I M I+ Sbjct: 398 VTGQALEESNVDLTLELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 443 >gi|291286229|ref|YP_003503045.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] gi|290883389|gb|ADD67089.1| fagellar hook-basal body protein [Denitrovibrio acetiphilus DSM 12809] Length = 829 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 14/136 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++ +Q + + +N+SN +TVG+++ + F +++ Sbjct: 1 MMRSLYSAISGLSVNQQAMDVLGNNISNVNTVGYKSGRAVFEDMLSQTLVGSTAPSDTLG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRF 106 + Q + E GS ST D A++GD +F ++ ++ TR G F Sbjct: 61 GTNSTQVGLGTSLAGVDTIFETGSMQSTSVNTDLAIQGDGFFVIKGAGSSDLLYTRAGDF 120 Query: 107 KVTDDGSLVSASGKYP 122 + GSLV++SG Y Sbjct: 121 RFDTSGSLVTSSGFYV 136 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 12/106 (11%) Query: 143 GEKGEI---SQKGKV--IATMGLYSVDMSQGFVRREN------SGISPNIPPTPLEDLSG 191 GEI G+V IA + + G + + S P G Sbjct: 720 NSNGEIIGYYTNGQVATIAQIATATFTNPGGLTKVGDTTFQKSSNSGDPAIGRPGTGFRG 779 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 V LE+SN + E MI + F + + +I +++ + E Sbjct: 780 -KVAAETLENSNVDLSTEFVNMITTQRGFQANSRVITTSDEMLQEL 824 >gi|294339843|emb|CAZ88206.1| putative Flagellar basal body FlaE (FlgE) [Thiomonas sp. 3As] Length = 415 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 12/159 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 ++F L+ A L + +N++N +TVGF++ +F++ A + V Sbjct: 1 MSTFQTALSGLQAASTDLQVMGNNIANANTVGFKSSNAQFADTYAAAIAGTSPQYGQVGI 60 Query: 62 GKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 G G+ ST LD A+ G +F + R+G+F++ +G +V A Sbjct: 61 GTSVATVAQQFSQGNIESTSNPLDVAINGSGFFQFNYNGATVYGRNGQFQLDQNGYIVDA 120 Query: 118 SGKYP--------VLDMASVPIQIPQKDEIFNVGEKGEI 148 +G VL S P+QI G + Sbjct: 121 AGGQLIGTPAVSGVLTGGSGPLQITTTTLAPKATTSGTL 159 Score = 35.0 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPN-----IPPTPLE 187 ++ G + G+ + + L + QG R N+ P Sbjct: 303 SNLSIDPSGVVFGRYTNGQSAKLGLITLTNFKAPQGLQRLGNNYFVPTYASGQPLTGQPG 362 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ +E SN + ++ +I Q + + I + + + Sbjct: 363 GGGLGVLQSSAVEQSNVDLSSQLVNLIVAQQAYQANAQTIKTQNQVVQTLL 413 >gi|313905135|ref|ZP_07838504.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] gi|313470038|gb|EFR65371.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] Length = 336 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 95/334 (28%), Gaps = 96/334 (28%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M + + ++ + + +L + +N++N +T GF++ F + + Sbjct: 1 MLRAMDSAVSGLRSHQNKLDVLGNNIANVNTNGFKSQNYTFKDAMYQTSAASSGGARDAD 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDF-------------ALEGDAWFALESPRGII--- 99 + G GS DF ++ G +F ++ + Sbjct: 61 GTATIGGTNPSQFGYGSVQG-AIATDFTSSTPQYVGGFNASINGSGFFITKAANSTVALS 119 Query: 100 ----------------------LTRDGRFKVTDDGSLVSAS-----GKYPVLDMASVPIQ 132 TR G+F + +G +V A+ G P Sbjct: 120 GDHTTQANVEADSTILKNANFNYTRVGQFTIDANGYMVDANKNFVYGYQPTNPTTGTANN 179 Query: 133 IPQKD--------------------------------EIFNVGEKGEISQK--------- 151 I + V G I Sbjct: 180 ISDPTSYDETRLVALRAPAEVSADGNTFSFAGQALQLKSVQVDNDGIIKATINNSNGDAM 239 Query: 152 GKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 V+ + + + +G + N+ G + + + + ++ G+LE SN + Sbjct: 240 NVVLGKVAIAAFQNQEGLAKAGNNTFNTRVGDNTGLLTATVPGGATPSLMGGYLEGSNVD 299 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E MI + F + LI +++ + E + Sbjct: 300 LAKEFSDMITTERGFQANAKLITVSDEVLQELVN 333 >gi|85712254|ref|ZP_01043305.1| flagellar hook protein [Idiomarina baltica OS145] gi|85693881|gb|EAQ31828.1| flagellar hook protein [Idiomarina baltica OS145] Length = 466 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 19/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ + ++ L A+N++N T GF+ + +F++V Q + A+ Sbjct: 2 SFNIALSGISSAQKDLDVTANNVANVRTTGFKGSRAEFADVFANNIFSGSDQQTGNGSAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSAS 118 G+ T LD A+ G+ +FA S + TR G FK+ DD +V+ Sbjct: 62 ASVAQQFSQGTLNFTQNSLDMAISGNGFFATTSGIAQQDFTYTRAGAFKLNDDSYIVNNQ 121 Query: 119 G----KYPVLDMAS----------VPIQIPQKDEIFNVGEK 145 G +PV + PI+IP + E Sbjct: 122 GRFLHGFPVDSASGATQSTSLAASGPIRIPDSAGAPSATEN 162 Score = 63.1 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDL 189 ++ E G IS + + + L QG + ++ S + T E Sbjct: 353 TNIDIAEDGLISASYSNGDVQYLGKVALVRFANEQGLTQLGDASWSESQSSGIATSGEAN 412 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SGV T++ LE+SN + E+ +I + F + + ++ N ++ Sbjct: 413 SGVFGTIEASALENSNVDLTKELVDLISAQRNFQANSRSLEINNSLQQNILQ 464 >gi|326796597|ref|YP_004314417.1| flagellar hook-basal body protein [Marinomonas mediterranea MMB-1] gi|326547361|gb|ADZ92581.1| flagellar hook-basal body protein [Marinomonas mediterranea MMB-1] Length = 565 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 4/142 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKISFVA 60 FN L+ A L +N++N DT GF+ +++F ++ + S V+ Sbjct: 2 GFNTALSGIKASADYLGVTGNNIANADTTGFKKSRIEFGDLYNTNVIGSGSSNTIGSGVS 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G++ TG LD A++G +F ++ TR G FK+ ++G+LV+ G Sbjct: 62 VNNVAQDFSAGNYNDTGNNLDVAIDGSGFFVVDQGGVQTYTRAGDFKLDEEGNLVTNDGG 121 Query: 121 YPVLDMASVPIQIPQKDEIFNV 142 + V SV I E V Sbjct: 122 F-VQGYNSVNGSIGGTLENLKV 142 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + + E G + +Q+ + + L + D + G ++G + Sbjct: 452 QGVSFDEDGFLVATYTNQQTATLGQIALATFDNTDGLNPSGDTGWVASSSSGAANIGKAN 511 Query: 193 T-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T +K G LE+SN + E+ +I + + + + + E E ++ + I N+ Sbjct: 512 TGTLGSIKGGSLEESNVDLTSELVALIEAQRNYQANSKTL-ETENTVTQTIINL 564 >gi|34558065|ref|NP_907880.1| flagellar hook protein FlgE [Wolinella succinogenes DSM 1740] gi|34483783|emb|CAE10780.1| FLAGELLAR HOOK PROTEIN [Wolinella succinogenes] Length = 716 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 14/134 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ A + L +N++N +T GF+ + FS+++ + + Sbjct: 1 MLRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRANFSDMLSQVNRIATSPYGGLG 60 Query: 61 SGKEYL------------SKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 +Y GS T ++D A+ GD +F + G TRDG F Sbjct: 61 GQNDYSIGLGTSINSTTKIFGQGSIQDTTNKMDLAIGGDGFFIVSGNGGRTNAYTRDGAF 120 Query: 107 KVTDDGSLVSASGK 120 G++V+ +G Sbjct: 121 GFDAAGNMVNNAGY 134 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGV----TVKRGFLEDSNANSMYE 209 +A + + S + G ++ S P+ +G + LE SN + Sbjct: 624 LAQVAIASFTNNGGLQAEGSNLFSQTANSGEPVVGTAGSGGRGKISPSALEMSNVDLSRS 683 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + Q+I + + F + + + +++ + ++ Sbjct: 684 LTQLIVVQRGFQANSKTVTTSDQILNTLLQ 713 >gi|296135673|ref|YP_003642915.1| fagellar hook-basal body protein [Thiomonas intermedia K12] gi|295795795|gb|ADG30585.1| fagellar hook-basal body protein [Thiomonas intermedia K12] Length = 414 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 12/159 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 ++F L+ A L + +N++N +TVGF++ +F++ A + V Sbjct: 1 MSTFQTALSGLQAASTDLQVMGNNIANANTVGFKSSNAQFADSYAAAIAGTSPQYGQVGI 60 Query: 62 GKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 G G+ ST LD A+ G +F + R+G+F++ +G +V A Sbjct: 61 GTSVATVAQQFSQGNIESTSNPLDVAINGSGFFQFNYNGATVYGRNGQFQLDQNGYIVDA 120 Query: 118 SGKYP--------VLDMASVPIQIPQKDEIFNVGEKGEI 148 +G VL S P+QI G + Sbjct: 121 AGGQLIGTPAVSGVLTGGSGPLQITTTTLAPKATTSGTL 159 Score = 35.0 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 ++ G + G+ + + L + QG R N+ P Sbjct: 302 SNLSIDPSGVVFGRYTNGQSAKLGLITLTNFKAPQGLQRLGNNYFVPTYASGQPLTGQPG 361 Query: 193 TVK-----RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +E SN + ++ +I Q + + I + + + Sbjct: 362 GGGLGVLQSSAVEQSNVDLSSQLVNLIVAQQAYQANAQTIKTQNQVVQTLL 412 >gi|149182512|ref|ZP_01860985.1| flagellar hook protein [Bacillus sp. SG-1] gi|148849772|gb|EDL63949.1| flagellar hook protein [Bacillus sp. SG-1] Length = 396 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 12/127 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--------DQKI 56 G++ + +L + +N++N +T GF+ +V F + + + + Sbjct: 1 MYSGISGMKNFQTKLDVIGNNIANVNTYGFKKGRVTFKDTMNQTISGASAAQEARGGRNP 60 Query: 57 SFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDG 112 V G S STG LD A+ GD +F ++ +R G F + D+G Sbjct: 61 MQVGLGSTLSTIDTIHTQSSLQSTGRPLDLAINGDGYFVVKQGDAQFYSRAGNFYLDDNG 120 Query: 113 SLVSASG 119 +LV+ G Sbjct: 121 TLVNGDG 127 Score = 78.9 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 E FN+G GEI G++ I + L G + + ++ TP +++G Sbjct: 283 ESFNIGSMGEINGVYSNGEITTIGYLALAKFSNPSGLTKAGGNSFQQSVNSGTPNVNVAG 342 Query: 192 ---VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E +MI + F + T +I +++ + E + Sbjct: 343 EGRGTIVSGSLEMSNVDLSEEFTEMISAQRGFQANTRIITTSDEILQELVN 393 >gi|192358786|ref|YP_001982400.1| flagellar hook protein FlgE [Cellvibrio japonicus Ueda107] gi|190684951|gb|ACE82629.1| flagellar hook protein FlgE [Cellvibrio japonicus Ueda107] Length = 803 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISFVAS 61 SFN L+ A L +N++N T+GF++ + +F +V + + S V Sbjct: 2 SFNTALSGIRAANTDLQVTGNNIANASTIGFKSSRAEFGDVYTSTLLGGGANTPGSGVTI 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ T ELD ++ G+ +F +E + TR G F + +G +V+ +G Sbjct: 62 QNIRQQFTQGNLKFTQNELDLSINGEGFFVVEKNGERLFTRAGTFGLDKNGYIVNGTGAL 121 Query: 122 P---VLDMASV 129 V D Sbjct: 122 LQGFVADANGN 132 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 44/172 (25%) Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE----------------------- 147 DG V A G VL VP+ P F V G Sbjct: 631 DGQPVGALGPLNVLQGGGVPVVEPPTSSNFEVDLAGSTQFGSVFAVESLDQNGYATGRLA 690 Query: 148 ---ISQKG-----------KVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLE 187 IS G +++ + L + ++ + P Sbjct: 691 GLDISTTGIVFARFTNGEAQILGQVALANFASVDNLKPTGDTMWTQTFESGEAVIGAPGS 750 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + G +E+SN + ++ +I + + + I+ + I Sbjct: 751 AQLG-NITAGAVEESNVDLSEQLVNLIIAQRNYQANAKTIETANATTQTIIN 801 >gi|288940409|ref|YP_003442649.1| fagellar hook-basal body protein [Allochromatium vinosum DSM 180] gi|288895781|gb|ADC61617.1| fagellar hook-basal body protein [Allochromatium vinosum DSM 180] Length = 436 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVASG 62 SF+IGL+ A + L +N++N+ T+GF+ + +F+++ + +++ V Sbjct: 2 SFSIGLSGLQAAAKDLEVTGNNVANSGTIGFKKSRAEFADIYASSFYTCVNKSAVGVRLD 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASG 119 G+ T LD A+ G+ +F L S G + TR+G F+V DG +V++SG Sbjct: 62 AVTQQFSQGNVELTDNTLDLAINGEGFFVLNSEAGQDGKVYTRNGAFQVDRDGYVVNSSG 121 Query: 120 K 120 + Sbjct: 122 Q 122 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG-- 191 F+V G I GK V+ + + + QG + ++ + P+ +G Sbjct: 325 FDVDADGAIFSRYSNGKSYVLGQVAMANFKNPQGLQQLGDNNWGESYNSGEPIYAAAGDG 384 Query: 192 --VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ LE+SN + E+ MI + + + I +++ + Sbjct: 385 RLGSIQSCALENSNVDLSQELVNMITAQRNYEANAKTISTSDQMTQTILN 434 >gi|294635610|ref|ZP_06714087.1| flagellar hook protein FlgE [Edwardsiella tarda ATCC 23685] gi|291091062|gb|EFE23623.1| flagellar hook protein FlgE [Edwardsiella tarda ATCC 23685] Length = 411 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 7/141 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A +L + +N++N+ TVGF++ V F+++ K + ++ V Sbjct: 2 GFSQAISGMNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + G+ +T LD A+ G +F ++ P G + TR+G+F G L +A G Y Sbjct: 60 ---DFKDGTTTTTNRGLDVAISGQGFFRMQDPNGSVYYTRNGQFSKDAKGFLTNAQGMYL 116 Query: 123 VL-DMASVPIQIPQKDEIFNV 142 + P I Q + + Sbjct: 117 TGYPASGTPPTIQQGADPVPI 137 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVT 193 + + + G I+ Q+ +++ + + + +G V N+ P+ SG + Sbjct: 300 YQINDDGTITGSYTNQQKQLLGQIVMANFAAPEGLVSEGNNVWSESAKSGQPIVGTSGTS 359 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +E SN + ++ MI + + S I ++ + + Sbjct: 360 GLGNLTSGAVEASNVDLSKQLVDMIVAQRNYQSNAQTIKTQDQILQTLVN 409 >gi|218885350|ref|YP_002434671.1| hypothetical protein DvMF_0246 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756304|gb|ACL07203.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 545 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVA 60 S G++ LA ++++ + +N++N +TVGF+ ++ F + + + Q V+ Sbjct: 6 SMWTGVSGLLAHGEKMNVLGNNIANVNTVGFKGSRMDFQDFINQDVYSAVGVSQVGRGVS 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSLVSAS 118 G + G+F +T D A+ G +F + TR G F+ +DG LV Sbjct: 66 IGAIFGDFSQGAFETTNEATDLAIGGKGFFQVRPKGQETSYYTRAGNFRFDNDGYLVDPH 125 Query: 119 GK 120 G Sbjct: 126 GY 127 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP-----PTPLE 187 + V + G + G ++ + LY R + S P Sbjct: 431 QNITVDQDGVVHGRYSNGVILDLYQITLYDFTSPTNLRREGGNLFSETRASGDALAGPAN 490 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V LE SN + E QMI + F S + +I + + + Sbjct: 491 ANGYGSVNSNSLEQSNVDLAREFVQMITTQRGFQSNSKVITTTDTMLETVVN 542 >gi|292492363|ref|YP_003527802.1| flagellar basal body FlaE domain protein [Nitrosococcus halophilus Nc4] gi|291580958|gb|ADE15415.1| flagellar basal body FlaE domain protein [Nitrosococcus halophilus Nc4] Length = 425 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 18/166 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVAS 61 SFN L+ A L V++N++N +T GF+ + +F+++ V + + S V Sbjct: 2 SFNTSLSGLNAASSDLDVVSNNIANANTTGFKRSRAEFADIFAVSSFGSPKTAVGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 + + G+ T LD A+ G +FAL + ++ +R G F + DG +V+ + Sbjct: 62 NRAAQQFDQGNLDFTQNILDLAVSGRGFFALSPNLTNNELVYSRAGAFSINKDGYVVNGA 121 Query: 119 GK----YPVLDMASV---------PIQIPQKDEIFNVGEKGEISQK 151 G+ YPV +V P+++P + I Sbjct: 122 GQFLRTYPVNQDGTVTASSLESSQPVRLPTSAGTPQATSQVSIGAN 167 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 10/108 (9%) Query: 142 VGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT--- 193 + E G I + + L QG + N+ + I Sbjct: 316 ISETGVIRANFSNGQNLALGKVALAQFPNEQGLRQLGNNSWAGTIDSGAAIAGEAGNGSF 375 Query: 194 --VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ +I + F + I+ + Sbjct: 376 GLIQGGALESSNVDLTAELVHLITAQRNFQANARAIETASTLTDSILN 423 >gi|319944135|ref|ZP_08018413.1| flagellar hook protein FlgE [Lautropia mirabilis ATCC 51599] gi|319742629|gb|EFV95038.1| flagellar hook protein FlgE [Lautropia mirabilis ATCC 51599] Length = 417 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 7/131 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 +F GL+ A + L T+ N++N TVGF+ + +F++V + + + Sbjct: 2 AFQQGLSGLNAAARHLDTIGHNVANASTVGFKASRAEFADVYATTVYGVSNVSPGIGTEV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG- 119 G G+ +T LD + G +F + G I TR+G+FK+ G +V+ASG Sbjct: 62 GAIAQQFSQGALTTTNNSLDLGINGGGFFRMSDNGGAITYTREGQFKLDKSGYIVNASGK 121 Query: 120 ---KYPVLDMA 127 YPV Sbjct: 122 RLTGYPVDKNG 132 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLED 188 F+VG G + G+ + + L + QG + +P Sbjct: 306 FSVGRDGSLMARYTNGQTVSKGRVALANFTNPQGLQPLGGNQWGETADSGAPLVGSPSTG 365 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV ++ G LE SN + E+ MI + + + + +++ + + Sbjct: 366 TLGV-IQSGALESSNVDLTQELVNMITAQRVYQANAQTVRTHDQLLQTIVN 415 >gi|332305615|ref|YP_004433466.1| flagellar hook-basal body protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172944|gb|AEE22198.1| flagellar hook-basal body protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 460 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L T A+N++N +TVGF+ + +F +V + + + V + Sbjct: 2 SFNIALSGVSAAQRDLDTTANNIANVNTVGFKESRAEFGDVYASSLLAGGKTKVGDGVIT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G+ +FA R TR G FK+ + +V+++ Sbjct: 62 QEVAQQFSQGSLQFTNNSLDLAVTGNGFFATIPEIDSREFSFTRAGMFKLDAENFVVNSN 121 Query: 119 G----KYPVLDMA---------SVPIQIPQKDEI 139 G +PV + P++IP Sbjct: 122 GDNLLGFPVNPDGTSSSVALSTTQPVRIPDSSGS 155 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN-----SGISPNIPPTPLEDL 189 ++G G + + I + L QG ++ N S +S Sbjct: 349 IDIGADGLVRATYSNGTSEPIIRVALVRFANDQGLTQQSNTQWQESILSGEALAGEATTG 408 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + LE +N N E+ +I + F + + ++ N + + Sbjct: 409 TFGDINSSALEQANVNLTTELIDLIIAQRNFQANSRALEVNNQLNQTILN 458 >gi|157376216|ref|YP_001474816.1| flagellar hook protein FlgE [Shewanella sediminis HAW-EB3] gi|157318590|gb|ABV37688.1| flagellar basal body FlaE domain protein [Shewanella sediminis HAW-EB3] Length = 454 Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 21/192 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +++GF+ + +F++V N + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTGVGGGATT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 GS T LD A+ G +F S + + TR G FKV + LV + Sbjct: 62 SHVAQQFHQGSLQFTNNALDMAINGGGFFVTSSGFSSQDLSYTRAGAFKVDSNSYLVDSQ 121 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G + + F V + G S + T + D + + EN GI Sbjct: 122 GNFL---------------QAFEVDKDGN-STSVSLTETKPVRIPDTAGSPKKTENVGIQ 165 Query: 179 PNIPPTPLEDLS 190 N+ Sbjct: 166 MNLNAGDGTKDP 177 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG- 191 VG G I G +A + L QG + N+ ++ Sbjct: 341 TNVEVGADGLINASYSNGATVALARVALARFANEQGLTQVGNTSWKASLDSGAALAGEAN 400 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 401 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 453 >gi|315122284|ref|YP_004062773.1| flagellar hook protein FlgE [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495686|gb|ADR52285.1| flagellar hook protein FlgE [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 422 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 ++ A R+S V+DN++N +T+G++ V FS +V VA ++ Sbjct: 7 MKTAMSGMDAQSNRVSAVSDNIANVNTIGYKRTAVSFSSLVFPPAAGCHTS-GGVAVSEK 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG---- 119 + GS I T + D A++G+ +F ++ G TR G F++ ++G L + +G Sbjct: 66 DMISSQGSLIHTASNTDLAIQGEGFFVVKDKTGTHYLTRSGNFQINNEGFLQNTAGYVLQ 125 Query: 120 KYPVLDMASVPIQIPQKDEIFNVG 143 YP + A P+ + + + Sbjct: 126 GYP-MRNAFSPLVLNSFQGLETIN 148 Score = 68.1 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 12/115 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P K F+V + G I G + + + +V + + P Sbjct: 302 QAPGKPRDFSVSKDGNIDVIYDDGTRVPVYRLAIATVPSENSLKICDGNTYLPTRDSGDI 361 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P D G V G LE +N + E+ ++I + + + + + M Sbjct: 362 SIGYPGNDQRGD-VLSGALETANVDIANELTELIEAQRNYAANSKVFQTGSDFMD 415 >gi|330445348|ref|ZP_08309000.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489539|dbj|GAA03497.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 467 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 S NI L+ A ++ L+T ++N++N +T GF+ + +F +V + N V + Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSA 117 GS I T LD + G +FA+ P LTR+G F + ++ LV++ Sbjct: 62 STVAQQFHEGSSIYTNNPLDLRVSGSGFFAVADNKNEPANNNLTRNGAFHLNNENELVNS 121 Query: 118 SGKYPVL 124 GK+ + Sbjct: 122 EGKFLLG 128 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 ++ +G I K V+ + L V QG + + + Sbjct: 354 SKVDIDPEGNILASYSNGKDVVVGRVALARVSNEQGLAQLGGTLWNTTQESGQAIWGDAS 413 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S +K G LE SN + E+ +I + F + + +D N + ++ Sbjct: 414 QGSFGAIKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQLQQNILQ 465 >gi|332531618|ref|ZP_08407515.1| flagellar hook protein FlgE [Hylemonella gracilis ATCC 19624] gi|332038981|gb|EGI75410.1| flagellar hook protein FlgE [Hylemonella gracilis ATCC 19624] Length = 512 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 4/130 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISFVAS 61 F GL+ A + L + +N++N +T GF++ + +F +V + + V Sbjct: 2 GFQQGLSGLNASSRSLDVIGNNIANANTTGFKSGRAEFGDVFASSIGASGAGTIGIGVEV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 G+ T +LD A+ G +FAL+ G +R G FK+ G +V+ +G Sbjct: 62 STVSQQFTQGNIAITNNDLDVAINGSGFFALQLQDGSRAYSRAGEFKLDPLGYVVTNTGA 121 Query: 121 YPVLDMASVP 130 V+ + P Sbjct: 122 -QVMGFPTDP 130 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + G I+ + + + L + QG N I Sbjct: 395 PGDMVGLKIEDNGIITARFSNGETQAFGQLALANFRNVQGLSPTGNGEWIETQASGQPIF 454 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P E G ++ G LE+S+ + E+ M+ + + + I ++ M + Sbjct: 455 GGPTEGNLG-ELRSGALEESSVDLTKELVNMMTAQRTYQANAQTIKTQDQVMQTLVN 510 >gi|89075495|ref|ZP_01161906.1| flagellar hook protein [Photobacterium sp. SKA34] gi|89048767|gb|EAR54338.1| flagellar hook protein [Photobacterium sp. SKA34] Length = 467 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 S NI L+ A ++ L+T ++N++N +T GF+ + +F +V N V + Sbjct: 2 SMNIALSGLGAAQKDLNTTSNNIANANTFGFKESRAEFGDVYSNSIFSNAKTTTGGGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSA 117 GS I T LD + G +FA+ P LTR+G F + ++ LV++ Sbjct: 62 STVAQQFHEGSSIYTNNPLDLRVSGSGFFAVADNKNEPANNNLTRNGAFHLNNENELVNS 121 Query: 118 SGKYPVL 124 GK+ + Sbjct: 122 EGKFLLG 128 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 ++ +G I GK V+ + L V QG + + + Sbjct: 354 SKVDIDPEGNILASYSNGKDIVVGRVALARVSNEQGLAQLGGTLWNTTQESGQAIWGDAS 413 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S +VK G LE SN + E+ +I + F + + +D N + ++ Sbjct: 414 QGSFGSVKSGTLEQSNIDMTQELVDLITAQRNFQASSRALDVNNQLQQNILQ 465 >gi|153011508|ref|YP_001372722.1| flagellar hook protein FlgE [Ochrobactrum anthropi ATCC 49188] gi|151563396|gb|ABS16893.1| flagellar basal body FlaE domain protein [Ochrobactrum anthropi ATCC 49188] Length = 426 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 16/170 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLS VADN++N TVG++ + +FS +V S V Sbjct: 35 MMR---TGVSGMNAQANRLSAVADNIANASTVGYKRAETQFSSLVLPSTGGQYNSGS-VL 90 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ G LTR G F +G+LV+++G Sbjct: 91 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGADGSTFLTRAGSFVPDKNGNLVNSAG 150 Query: 120 KYPVLDMASVP-----------IQIPQKDEIFNVGEKGEISQKGKVIATM 158 Y + + P I + G + + Sbjct: 151 YYLLGAGPNDPAGALTMAGLNIINVNSAALPPEASTSGNFTVNLPSTDQI 200 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGE---ISQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +V G I + G KV+A + L +V + P+ Sbjct: 306 QAPSAVKGVDVANDGSVVAIYENGTQKVLARIPLANVASPDRMTVVSGNVFLPSADSGDV 365 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G V G LE+SNA+ E+ MI + + + + + + M + Sbjct: 366 RLGFPQSDGMG-KVMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 423 >gi|119477953|ref|ZP_01618053.1| flagellar hook protein [marine gamma proteobacterium HTCC2143] gi|119448866|gb|EAW30108.1| flagellar hook protein [marine gamma proteobacterium HTCC2143] Length = 429 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVASG 62 SFN L+ A L +N++N T+GF+ + +F +V ++ + + S V Sbjct: 2 SFNTALSGLRAANTDLEVSGNNIANASTIGFKRSRAEFGDVYANSLVSGSNTTGSGVLVN 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G+ T LD A+ G +F + G TR G F + D+G + + SG Sbjct: 62 SISQQFDQGNISFTDNSLDLAINGTGFFVVAESSGATAYTRAGYFGIDDEGYITNNSG 119 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 13/113 (11%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 + GE+ + ++ + + QG +G + PL Sbjct: 318 LEINTTGEVFARYTNGEALILGQVAMALFSNEQGLNPLGETGWAQSFESGEPVVGAPLTG 377 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G ++ G LE+SN + E+ ++I + F + I+ + ++ +AI NI Sbjct: 378 NLG-GIQSGALEESNVDLSEELVRLIIAQRNFQANAKTIETAD-TVTQAIINI 428 >gi|327192294|gb|EGE59259.1| flagellar hook protein FlgE [Rhizobium etli CNPAF512] Length = 483 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 16/194 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +TVG++ + FS +V + + V + Sbjct: 59 SMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSG-NYNSGGVQTSV 117 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 E G T + D A+ GD +F +ES G +LTR G F V DG+LV+++G Y Sbjct: 118 RQAISEQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNSAG-YT 176 Query: 123 VLD---MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 ++ + VP + G G + +A GL ++ + + + + Sbjct: 177 LMGYSYDSGVP-------AVVVNGFDGLVPVN---VAQSGLSAIASTSAYFSGNLNSEAT 226 Query: 180 NIPPTPLEDLSGVT 193 + T + + Sbjct: 227 VVTDTTTLPSANTS 240 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 58/215 (26%), Gaps = 49/215 (22%) Query: 73 FISTGTELDF--ALEGDAWFALESPRGIILTRD-------------GRFKVTDDGSLVSA 117 F TG D A+ G W TR DG L SA Sbjct: 267 FTKTGVTTDASGAVTGSTWEVAVYRNADAATRGTTSFPYSSDAVSVSTLSFDADGQLTSA 326 Query: 118 SGKYPVLDMASVPIQIP----------------------QKDEIFNVGEKGEISQ----- 150 + V + I + ++ G +S Sbjct: 327 TDTDIVDPTTAQTISMDYSSFTQLASDFSATGSADGQAASSVSSVSIDTDGVVSVSYANG 386 Query: 151 KGKVIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 K + + L +V V N + P + G +++ G LE SN Sbjct: 387 TTKALYQIPLATVASPDNLTLLSGNVYTANGRSGVTVTGFPQTNGLG-SIQSGALESSNV 445 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E+ +MI + + + + + M + Sbjct: 446 DLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 480 >gi|294140184|ref|YP_003556162.1| flagellar hook protein FlgE [Shewanella violacea DSS12] gi|293326653|dbj|BAJ01384.1| flagellar hook protein FlgE [Shewanella violacea DSS12] Length = 454 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 19/183 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +++GF+ + +F++V N V + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTAVGGGVTT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S + TR G FKV LV + Sbjct: 62 SQVAQQFHQGSLQFTNNALDMAINGGGFFVTSSELEAKDHSFTRAGAFKVNSADYLVDSQ 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEIFNVGEKGEISQK-GKVIATMGLYSVD 164 G Y PV + P++IP E I AT+ D Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTTKPVRIPDTAGSPKKTENINIQMNLNAADATLDPALFD 181 Query: 165 MSQ 167 + Sbjct: 182 PND 184 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP-----PTPLE 187 VG G I G +A + L QG + N+ ++ Sbjct: 341 TNVEVGADGLINASYSNGSTVALARVALARFANEQGLTQVGNTSWRASLDSGLALAGEAN 400 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + +++ LE SN + E+ +I + F + + ++ N ++ + I I Sbjct: 401 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTILQI 453 >gi|149927798|ref|ZP_01916049.1| flagellar hook protein E [Limnobacter sp. MED105] gi|149823420|gb|EDM82651.1| flagellar hook protein E [Limnobacter sp. MED105] Length = 437 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 12/212 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---FVA 60 SF GL+ A ++ L +A+N+SN VGF+ + +FS+V N + Sbjct: 8 SFQQGLSGLNAAQRGLEVIANNVSNASVVGFKGSEAEFSDVFARAFNGARSTNGIGLGTS 67 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G+ TG LD A+ G +F +++ G I TR+G+F + ++G +V++ G Sbjct: 68 LAAVTQNFKQGNINVTGNPLDLAISGTGFFKVQAGNGDNIYTRNGQFTLNNEGVIVNSRG 127 Query: 120 ----KYPVLDMASVPIQIPQKDEIF--NVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 +PV P + Q + ++ S ++ ++D + F Sbjct: 128 DKLQGFPVDAATGRPSDVAQDILVPRGSIPPAATRSANLELNLDARATAIDPALAFDPAN 187 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFL--EDSN 203 + + + T ++L G + ++ E SN Sbjct: 188 LNTFNNSTSMTVYDELGGAHIMAIYMRKEASN 219 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 11/112 (9%) Query: 140 FNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDL 189 F+VG G ++ G+++ A +GLY +G ++G P ED Sbjct: 326 FDVGADGMLTISYANGQLVNHAQIGLYRFPNPEGLQPVGSNGWLATNSSGPELVSLSEDT 385 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + ++ G LE+SN + E+ MI + + + + I + S+ + I N+ Sbjct: 386 AFGIIQSGALEESNIDLTAELVAMISAQRVYQANSQTIKTQD-SIFQTITNL 436 >gi|310659037|ref|YP_003936758.1| flagellar hook protein [Clostridium sticklandii DSM 519] gi|308825815|emb|CBH21853.1| flagellar hook protein [Clostridium sticklandii] Length = 418 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 24/176 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S N ++A + R+ + +N++N +T+G+++ +V F + + G + Sbjct: 1 MMRSMNSAVSALRNHQLRMDVIGNNIANVNTIGYKSSRVTFKDSLSQMLRGASGPDASRG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGR 105 V G + S G T LD + G+ +F + + G+ TR G Sbjct: 61 GTNPQQVGLGMDLSSIDTLFTTGVPDRTDRGLDVMVNGEGFFMVSADGTDNGMYYTRAGN 120 Query: 106 FKVTDDGSLVSASGKYPVL---------DMASVPIQIPQKDEIFNVGEKGEISQKG 152 F + +DG+LV+A G + I +P D I + + + Sbjct: 121 FDIDEDGNLVNADGLRVLGYKTDDAGNVGNEVGGIVVPLADSIPPIATTNVVMEGN 176 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 + +G+KGE+ + + K++ + G V+ + + P + G Sbjct: 304 TSYAIGQKGEVEGVFSNGRTKILGQVATSIFANPAGLVKMGGNLYRSSANSGDPQVNKPG 363 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + + +I ++ + E + Sbjct: 364 TGGNGGLQPGALEMSNVDLGKEFTNMIVTQRGFQANSRIISTTDQMLEELVN 415 >gi|51894131|ref|YP_076822.1| flagellar hook protein [Symbiobacterium thermophilum IAM 14863] gi|51857820|dbj|BAD41978.1| flagellar hook protein [Symbiobacterium thermophilum IAM 14863] Length = 418 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------GAIKNDIDQK 55 S G++ + + R+ + +N++N +T GF+ +V F++V G+ + Q Sbjct: 1 MRSLYSGVSGIRSHQTRMDVIGNNIANVNTTGFKASRVTFTDVFNQTLSSGSALTNPQQI 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSL 114 VA G L + G+F TG D A+ G F L+ + I+ +R G F DG L Sbjct: 61 GLGVAVGSTDLITDEGAFQMTGRAFDLAISGAGLFVLKGANDEILYSRAGMFDWNPDGIL 120 Query: 115 VSASGKYPVLD 125 ++ + V Sbjct: 121 INPALGMKVQG 131 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISP-NIPPTPL----E 187 E V E GEI + +++A + L + G ++ NS + P Sbjct: 304 EAVYVNELGEIIGRYTNGDSQLLAQIALAHFNNMAGLIKEGNSTFAESPASGVPQIGTAG 363 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + + +MI + + + ++ + + E I Sbjct: 364 TGGRGTLVPGNLEGSNVDLAGQFTEMILTQRGYQASARVVSTADDMLQEIIN 415 >gi|254516989|ref|ZP_05129047.1| flagellar hook protein FlgE [gamma proteobacterium NOR5-3] gi|219674494|gb|EED30862.1| flagellar hook protein FlgE [gamma proteobacterium NOR5-3] Length = 429 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 19/198 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 +F+ ++ A L +++N++N+ T GF+ + +F++ ++GA N I + +S Sbjct: 2 AFSTAISGINAATADLGVISNNIANSSTTGFKASRAEFADVYATSLLGAGSNAIGKGVSL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +E+ G+ T LD A+ G+ +F L I TR G F+V +G LVS Sbjct: 62 AGVTQEF---GQGNITFTNNSLDLAINGNGFFQLSVEGAIEYTRAGNFQVDREGFLVSNQ 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE---NS 175 Q+ ++ G+ G+I +I SV ++ RE + Sbjct: 119 NSRL------QGFQVDAGGDVT--GQLGDIQIDTSLIDPNATASVSLTSNLDSREVSPGT 170 Query: 176 GISPNIPPTPLEDLSGVT 193 G P D T Sbjct: 171 GFGGAAAPFTEYDAFAAT 188 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG----ISPNIPPTPLEDLSGVTVKRGF-LEDSNANSM 207 + + + L S + G ++ S P SG+ V + LEDSN Sbjct: 336 RALGQIALASFNNQNGLQPVGDTNWVETFSSGSPNVGEPGTSGLGVVQSAALEDSNVEIT 395 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + F + +I + I Sbjct: 396 QELVDLIVAQRNFQANAQVIQAEDAITQTVIN 427 >gi|301053310|ref|YP_003791521.1| flagellar basal-body rod protein [Bacillus anthracis CI] gi|300375479|gb|ADK04383.1| flagellar basal-body rod protein [Bacillus cereus biovar anthracis str. CI] Length = 243 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 21/244 (8%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKF-----SEVVGAIKNDIDQKISF---VASGKEYLS 67 QR++ ++N++N T GF+ + + + S V +++ Sbjct: 1 MQRINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAATHVN 60 Query: 68 KEVGSFISTGTELDFALEGDA------WFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ T + DF L+ D +F LTRDG F + D L + SG + Sbjct: 61 LVQGNIQMTNSATDFFLD-DGTAGTASFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGAF 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGE----ISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 V+ + I+IP+ + V G ++Q + + ++REN Sbjct: 120 -VMGENNERIRIPEGAK-VAVQADGTLYDAVTQNNIARLQTKTVGAEANNRLMQRENKSF 177 Query: 178 SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + TVK LE+SN + EM ++ + ++ ++ +K + Sbjct: 178 TLAEGNIADLPNGVGTVKNYMLENSNVDMTKEMADLMTDQKMISASQRVMTSFDKIYEKE 237 Query: 238 IRNI 241 I Sbjct: 238 ANEI 241 >gi|15639714|ref|NP_219164.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025952|ref|YP_001933724.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum SS14] gi|6015169|sp|O07884|FLGE_TREPA RecName: Full=Flagellar hook protein flgE gi|2196893|gb|AAB61251.1| FlgE [Treponema pallidum] gi|3323028|gb|AAC65692.1| flagellar hook protein (flgE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018527|gb|ACD71145.1| flagellar hook protein [Treponema pallidum subsp. pallidum SS14] gi|291060091|gb|ADD72826.1| flagellar hook protein FlgE [Treponema pallidum subsp. pallidum str. Chicago] Length = 463 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T GF+ +V F +++ + + V Sbjct: 1 MMRSLFSGVSGMQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSAAARPNEEVG 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 G+ +TG D +++G +F L+S TR G F V Sbjct: 61 GVNPKEVGLGVLIASIDTVHTQGALQTTGINTDVSIQGSGFFVLKSGEKTFFTRAGAFGV 120 Query: 109 TDDGSLVSASGKYPVLD 125 + G+LV+ + V Sbjct: 121 DNAGTLVNPANGMRVQG 137 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSG 191 E F + + G I+ + I + L G + EN+ + N SG Sbjct: 349 ENFKIDQSGVITGVYSNGVSQDIGQLALAGFANQGGLEKAGENTYVQSNNSGIANISTSG 408 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V + G LE SN + + MI + F + I ++ + + Sbjct: 409 VMGKGKLIAGTLEMSNVDLTDQFTDMIITQKGFQAGAKTIQTSDTMLDTVL 459 >gi|114566393|ref|YP_753547.1| flagellar hook protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337328|gb|ABI68176.1| flagellar hook protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 475 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 15/137 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ + +N++N +T G++ +V F + + Sbjct: 1 MMRSMYSGVSGLRNHQTRMDVIGNNIANINTAGYKKSRVVFQDTLYQTMRGATRPDSSGS 60 Query: 53 --DQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + G S + +T LD ++GD +F + + TR G F Sbjct: 61 RGGTNPMGIGLGMSVSSIDQIHTGAPTTATNKLLDMGIDGDGYFMIRHGQQKYFTRAGNF 120 Query: 107 KVTDDGSLV-SASGKYP 122 ++ G+LV +A+G Y Sbjct: 121 ELDTKGNLVHTANGYYV 137 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP-----TPLE 187 + VG G I G+ +A + L G + + ++ +P Sbjct: 361 SSYTVGIDGVIRGSYDNGETRDLARVALARFQNPAGLTQLGGTMFQKSVNSGEAVVSPPT 420 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + LE SN + E MI + F + + +I +++ + E + Sbjct: 421 ESGMGKIVPSSLEMSNVDLSEEFTDMIVTQRGFQANSRIITTSDEMIQELVN 472 >gi|187918157|ref|YP_001883720.1| flagellar hook protein FlgE [Borrelia hermsii DAH] gi|119861005|gb|AAX16800.1| flagellar hook protein FlgE [Borrelia hermsii DAH] Length = 442 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + R+ V +N++N +T+GF+ +V F +++ + + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ GSF ST D + G+ +F L TR G F V Sbjct: 61 GVNPKQVGLGMSVATIDTIHTQGSFQSTQKASDLGISGNGFFILRDGNNSFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 D LV+ + + + I +++ N Sbjct: 121 DSDRRLVNPANGMKIQGWMAKSI---GGEQVINTSAD 154 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 E + + + G I+ G + I + L S G + ++ S Sbjct: 328 ENYEIDQNGVITGVYSNGIRRDIGKIALASFVNPGGLAKAGDTNFSETSNSGQARIGETG 387 Query: 193 -----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 FAGLGTIRAGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|2832235|gb|AAC01569.1| flagellar hook [Brucella abortus] Length = 396 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|325289233|ref|YP_004265414.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] gi|324964634|gb|ADY55413.1| fagellar hook-basal body protein [Syntrophobotulus glycolicus DSM 8271] Length = 447 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 16/135 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + ++ A ++++ + +N++N +TV ++ +V FS+++ + S Sbjct: 1 MMRALFSAVSGLQAHQKKMDVIGNNIANVNTVAYKASRVTFSDILSQTLSSATGADSTSG 60 Query: 58 -----------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL--TRDG 104 V G GS STG D +++GD +F +++ TR G Sbjct: 61 RGGSNAKQIGLGVGIGSIDTLMTAGSTESTGNSTDLSIDGDGFFIVKNGSTGTYMFTRAG 120 Query: 105 RFKVTDDGSLVSASG 119 F + D G+LV++ G Sbjct: 121 NFSIDDSGNLVTSDG 135 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 7/108 (6%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--S 190 E ++ G I G + + + L G ++ ++ + + Sbjct: 336 EDISIDSNGIILGVYSNGIEQPLGMIALARFANPSGLLKTGSNYYVATANSGEFTNGVMA 395 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G LE SN + E QMI + + + + +I ++ + I Sbjct: 396 NGALSSGTLEMSNVDLSTEFSQMITTQRGYQANSRMITTADEMLETII 443 >gi|297580843|ref|ZP_06942768.1| flagellar hook protein FlgE [Vibrio cholerae RC385] gi|297534669|gb|EFH73505.1| flagellar hook protein FlgE [Vibrio cholerae RC385] Length = 434 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 22/191 (11%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T LD + G +FA+ P+ LTR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNELTRNGAFHLDKNSFMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQK----DEIFNVGEKGEISQKGKVIATMGLYSVD 164 ++ VL PI IP + + N+ + G + L+ + Sbjct: 123 EFLLGYEVNPDTGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPANGDLKDP-ALFDIT 181 Query: 165 MSQGFVRRENS 175 + + R +S Sbjct: 182 DPETYNRTTSS 192 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + + + L V QG ++ + E Sbjct: 321 TKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ Sbjct: 381 KGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQ 432 >gi|121997319|ref|YP_001002106.1| flagellar basal body FlaE domain-containing protein [Halorhodospira halophila SL1] gi|121588724|gb|ABM61304.1| flagellar basal body FlaE domain protein [Halorhodospira halophila SL1] Length = 418 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 12/160 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 SFNI L + + L T ++N++N T GF+ + +F+++ I Q S Sbjct: 2 SFNISLTGINSASKDLETTSNNLANAGTTGFKESRAEFNDLFAMGPMGIPQLAVGQGSRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 GSF T LD +EG +F +E + TR G+F+V DG +V+ +GK Sbjct: 62 ANVGQMFSQGSFDFTERSLDLGIEGRGFFRMEDDGEVSYTRAGQFEVDRDGYIVNNTGKR 121 Query: 122 PV----------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 + +Q+P E EI+ Sbjct: 122 LTGFQTDEDGSRIGDGRDQLQLPTDGIPARASENVEIAAN 161 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSG 191 E NV G I + + + + L S + E S + PL + G Sbjct: 305 ENINVEGDGTILARYSNGEAQAVGQVALTSFPSEEKLQSVGETSWQATRDAGDPLIGVPG 364 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V+ G LE SN ++ MI + F++ ++ ++ E + Sbjct: 365 QGQFGRVENGALEQSNVEVSDQLVNMITAQRNFSANAQMVSTQDQVTQEILN 416 >gi|109899402|ref|YP_662657.1| flagellar hook protein FlgE [Pseudoalteromonas atlantica T6c] gi|109701683|gb|ABG41603.1| flagellar basal body FlaE [Pseudoalteromonas atlantica T6c] Length = 458 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 10/176 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L T A+N++N +TVGF+ + +F +V + + + V + Sbjct: 2 SFNIALSGVSAAQRDLDTTANNIANVNTVGFKESRAEFGDVYASSLLAGGKTKVGDGVIT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G+ +FA R TR G FK+ + +V+++ Sbjct: 62 QEVAQQFSQGSLQFTNNSLDLAVTGNGFFATIPEIDSREFSFTRAGMFKLDAENFVVNSN 121 Query: 119 G----KYPVLDMASVPIQIPQKDEIFNV-GEKGEISQKGKVIATMGLYSVDMSQGF 169 G +PV + + + G +V M L + D + Sbjct: 122 GDNLLGFPVNPDGTSSSVALSTTQAVRIPDSSGSPQPTSEVSLKMNLPAGDDAVDL 177 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN-----SGISPNIPPTPLEDL 189 ++G G + + I + L QG ++ N S +S Sbjct: 347 IDIGADGLVRATYSNGTSEPIIRVALVRFANDQGLTQQSNTQWQESILSGEALAGEATTG 406 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + LE +N N E+ +I + F + + ++ N + + Sbjct: 407 TFGDINSSALEQANVNLTTELIDLIIAQRNFQANSRALEVNNQLNQTILN 456 >gi|15642196|ref|NP_231828.1| flagellar hook protein FlgE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586263|ref|ZP_01676053.1| flagellar hook protein FlgE [Vibrio cholerae 2740-80] gi|121726540|ref|ZP_01679789.1| flagellar hook protein FlgE [Vibrio cholerae V52] gi|147674037|ref|YP_001217714.1| flagellar hook protein FlgE [Vibrio cholerae O395] gi|153213649|ref|ZP_01948922.1| flagellar hook protein FlgE [Vibrio cholerae 1587] gi|153817107|ref|ZP_01969774.1| flagellar hook protein FlgE [Vibrio cholerae NCTC 8457] gi|153820826|ref|ZP_01973493.1| flagellar hook protein FlgE [Vibrio cholerae B33] gi|153825324|ref|ZP_01977991.1| flagellar hook protein FlgE [Vibrio cholerae MZO-2] gi|153829329|ref|ZP_01981996.1| flagellar hook protein FlgE [Vibrio cholerae 623-39] gi|183179565|ref|ZP_02957776.1| flagellar hook protein FlgE [Vibrio cholerae MZO-3] gi|227082321|ref|YP_002810872.1| flagellar hook protein FlgE [Vibrio cholerae M66-2] gi|229507726|ref|ZP_04397231.1| flagellar hook protein FlgE [Vibrio cholerae BX 330286] gi|229512079|ref|ZP_04401558.1| flagellar hook protein FlgE [Vibrio cholerae B33] gi|229513841|ref|ZP_04403303.1| flagellar hook protein FlgE [Vibrio cholerae TMA 21] gi|229519215|ref|ZP_04408658.1| flagellar hook protein FlgE [Vibrio cholerae RC9] gi|229522146|ref|ZP_04411563.1| flagellar hook protein FlgE [Vibrio cholerae TM 11079-80] gi|229528798|ref|ZP_04418188.1| flagellar hook protein FlgE [Vibrio cholerae 12129(1)] gi|229607230|ref|YP_002877878.1| flagellar hook protein FlgE [Vibrio cholerae MJ-1236] gi|254225801|ref|ZP_04919406.1| flagellar hook protein FlgE [Vibrio cholerae V51] gi|254849326|ref|ZP_05238676.1| flagellar hook protein FlgE [Vibrio cholerae MO10] gi|255747104|ref|ZP_05421049.1| flagellar hook protein FlgE [Vibrio cholera CIRS 101] gi|262161352|ref|ZP_06030462.1| flagellar hook protein FlgE [Vibrio cholerae INDRE 91/1] gi|262167777|ref|ZP_06035479.1| flagellar hook protein FlgE [Vibrio cholerae RC27] gi|262191689|ref|ZP_06049865.1| flagellar hook protein FlgE [Vibrio cholerae CT 5369-93] gi|298500425|ref|ZP_07010230.1| flagellar hook protein FlgE [Vibrio cholerae MAK 757] gi|9656753|gb|AAF95342.1| flagellar hook protein FlgE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549529|gb|EAX59555.1| flagellar hook protein FlgE [Vibrio cholerae 2740-80] gi|121630993|gb|EAX63372.1| flagellar hook protein FlgE [Vibrio cholerae V52] gi|124115848|gb|EAY34668.1| flagellar hook protein FlgE [Vibrio cholerae 1587] gi|125621707|gb|EAZ50036.1| flagellar hook protein FlgE [Vibrio cholerae V51] gi|126512375|gb|EAZ74969.1| flagellar hook protein FlgE [Vibrio cholerae NCTC 8457] gi|126521618|gb|EAZ78841.1| flagellar hook protein FlgE [Vibrio cholerae B33] gi|146315920|gb|ABQ20459.1| flagellar hook protein FlgE [Vibrio cholerae O395] gi|148875170|gb|EDL73305.1| flagellar hook protein FlgE [Vibrio cholerae 623-39] gi|149741008|gb|EDM55077.1| flagellar hook protein FlgE [Vibrio cholerae MZO-2] gi|183012976|gb|EDT88276.1| flagellar hook protein FlgE [Vibrio cholerae MZO-3] gi|227010209|gb|ACP06421.1| flagellar hook protein FlgE [Vibrio cholerae M66-2] gi|227014093|gb|ACP10303.1| flagellar hook protein FlgE [Vibrio cholerae O395] gi|229332572|gb|EEN98058.1| flagellar hook protein FlgE [Vibrio cholerae 12129(1)] gi|229341071|gb|EEO06076.1| flagellar hook protein FlgE [Vibrio cholerae TM 11079-80] gi|229343904|gb|EEO08879.1| flagellar hook protein FlgE [Vibrio cholerae RC9] gi|229349022|gb|EEO13979.1| flagellar hook protein FlgE [Vibrio cholerae TMA 21] gi|229352044|gb|EEO16985.1| flagellar hook protein FlgE [Vibrio cholerae B33] gi|229355231|gb|EEO20152.1| flagellar hook protein FlgE [Vibrio cholerae BX 330286] gi|229369885|gb|ACQ60308.1| flagellar hook protein FlgE [Vibrio cholerae MJ-1236] gi|254845031|gb|EET23445.1| flagellar hook protein FlgE [Vibrio cholerae MO10] gi|255735506|gb|EET90906.1| flagellar hook protein FlgE [Vibrio cholera CIRS 101] gi|262023842|gb|EEY42541.1| flagellar hook protein FlgE [Vibrio cholerae RC27] gi|262028663|gb|EEY47317.1| flagellar hook protein FlgE [Vibrio cholerae INDRE 91/1] gi|262032428|gb|EEY50990.1| flagellar hook protein FlgE [Vibrio cholerae CT 5369-93] gi|297541118|gb|EFH77172.1| flagellar hook protein FlgE [Vibrio cholerae MAK 757] gi|327484716|gb|AEA79123.1| Flagellar hook protein FlgE [Vibrio cholerae LMA3894-4] Length = 434 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 22/191 (11%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T LD + G +FA+ P+ LTR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNELTRNGAFHLDKNSFMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQK----DEIFNVGEKGEISQKGKVIATMGLYSVD 164 ++ VL PI IP + + N+ + G + L+ + Sbjct: 123 EFLLGYEVNPDTGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPANGDLKDP-ALFDIT 181 Query: 165 MSQGFVRRENS 175 + + R +S Sbjct: 182 DPETYNRTTSS 192 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + + + L V QG ++ + E Sbjct: 321 TKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ Sbjct: 381 KGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQ 432 >gi|289679029|ref|ZP_06499919.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 279 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVR 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS + T LD A+ GD +F + + + TR G F +G +V++S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 >gi|17988503|ref|NP_541136.1| flagellar hook protein FlgE [Brucella melitensis bv. 1 str. 16M] gi|256042866|ref|ZP_05445812.1| flagellar hook protein FlgE [Brucella melitensis bv. 1 str. Rev.1] gi|260564103|ref|ZP_05834588.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. 16M] gi|265989301|ref|ZP_06101858.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. Rev.1] gi|38257707|sp|Q8YDL6|FLGE_BRUME RecName: Full=Flagellar hook protein flgE gi|17984295|gb|AAL53400.1| flagellar hook protein flge [Brucella melitensis bv. 1 str. 16M] gi|260151746|gb|EEW86839.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. 16M] gi|262999970|gb|EEZ12660.1| flagellar hook protein flgE [Brucella melitensis bv. 1 str. Rev.1] Length = 396 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|62317957|ref|YP_223810.1| flagellar hook protein FlgE [Brucella abortus bv. 1 str. 9-941] gi|83269934|ref|YP_419225.1| flagellar hook protein FlgE [Brucella melitensis biovar Abortus 2308] gi|189023208|ref|YP_001932949.1| flagellar hook protein FlgE [Brucella abortus S19] gi|225686885|ref|YP_002734857.1| flagellar hook protein FlgE [Brucella melitensis ATCC 23457] gi|254691611|ref|ZP_05154865.1| flagellar hook protein FlgE [Brucella abortus bv. 6 str. 870] gi|254731634|ref|ZP_05190212.1| flagellar hook protein FlgE [Brucella abortus bv. 4 str. 292] gi|256112177|ref|ZP_05453098.1| flagellar hook protein FlgE [Brucella melitensis bv. 3 str. Ether] gi|256256798|ref|ZP_05462334.1| flagellar hook protein FlgE [Brucella abortus bv. 9 str. C68] gi|256261978|ref|ZP_05464510.1| trypsin inhibitor Kunitz [Brucella melitensis bv. 2 str. 63/9] gi|260544142|ref|ZP_05819963.1| trypsin inhibitor Kunitz [Brucella abortus NCTC 8038] gi|260757242|ref|ZP_05869590.1| flagellar hook protein flgE [Brucella abortus bv. 6 str. 870] gi|260759393|ref|ZP_05871741.1| flagellar hook protein flgE [Brucella abortus bv. 4 str. 292] gi|260883046|ref|ZP_05894660.1| flagellar hook protein flgE [Brucella abortus bv. 9 str. C68] gi|265993603|ref|ZP_06106160.1| flagellar hook protein flgE [Brucella melitensis bv. 3 str. Ether] gi|297250151|ref|ZP_06933852.1| flagellar hook protein flgE [Brucella abortus bv. 5 str. B3196] gi|68845076|sp|O52070|FLGE_BRUAB RecName: Full=Flagellar hook protein flgE gi|12330680|gb|AAG52877.1| FlgE [Brucella abortus] gi|62198150|gb|AAX76449.1| FlgE, flagellar hook protein [Brucella abortus bv. 1 str. 9-941] gi|82940208|emb|CAJ13264.1| Flagellar basal body rod protein:Trypsin inhibitor Kunitz [Brucella melitensis biovar Abortus 2308] gi|189021782|gb|ACD74503.1| Trypsin inhibitor Kunitz [Brucella abortus S19] gi|225642990|gb|ACO02903.1| flagellar basal body FlaE domain protein [Brucella melitensis ATCC 23457] gi|260097413|gb|EEW81287.1| trypsin inhibitor Kunitz [Brucella abortus NCTC 8038] gi|260669711|gb|EEX56651.1| flagellar hook protein flgE [Brucella abortus bv. 4 str. 292] gi|260677350|gb|EEX64171.1| flagellar hook protein flgE [Brucella abortus bv. 6 str. 870] gi|260872574|gb|EEX79643.1| flagellar hook protein flgE [Brucella abortus bv. 9 str. C68] gi|262764473|gb|EEZ10505.1| flagellar hook protein flgE [Brucella melitensis bv. 3 str. Ether] gi|263091462|gb|EEZ15998.1| trypsin inhibitor Kunitz [Brucella melitensis bv. 2 str. 63/9] gi|297174020|gb|EFH33384.1| flagellar hook protein flgE [Brucella abortus bv. 5 str. B3196] gi|326411303|gb|ADZ68367.1| flagellar hook protein FlgE [Brucella melitensis M28] gi|326554592|gb|ADZ89231.1| flagellar hook protein FlgE [Brucella melitensis M5-90] Length = 396 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|256059804|ref|ZP_05449999.1| flagellar hook protein FlgE [Brucella neotomae 5K33] gi|261323784|ref|ZP_05962981.1| flagellar hook protein flgE [Brucella neotomae 5K33] gi|261299764|gb|EEY03261.1| flagellar hook protein flgE [Brucella neotomae 5K33] Length = 396 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|294140185|ref|YP_003556163.1| flagellar hook protein FlgE [Shewanella violacea DSS12] gi|293326654|dbj|BAJ01385.1| flagellar hook protein FlgE [Shewanella violacea DSS12] Length = 453 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 19/183 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +++GF+ + +FS+V N V + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFSDVYANSIFSNSKTAVGGGVTT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S + TR G FKV LV + Sbjct: 62 SQVAQQFHQGSMQFTNNALDMAINGGGFFVTSSDLSGKEQSFTRAGAFKVDSSNYLVDSQ 121 Query: 119 GK----YPVLDMASV---------PIQIPQKDEIFNVGEKGEISQKGKVIA-TMGLYSVD 164 G +PV + P+ IP E I T+ D Sbjct: 122 GNFLQTFPVDKDGNSTSVSLTTTKPVTIPDTAGSPQKTENIGIQMNLNAADSTLDPALFD 181 Query: 165 MSQ 167 + Sbjct: 182 PND 184 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDL 189 VG G I G +A + L QG + N+ + E Sbjct: 340 TNVEVGADGLINASYSNGTTVALARVALARFANEQGLTQVGNTSWKASQDSGLALAGEAN 399 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +G +++ LE SN + E+ +I + F + + ++ N ++ + I I Sbjct: 400 TGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTILQI 452 >gi|254524254|ref|ZP_05136309.1| flagellar biosynthesis hook protein [Stenotrophomonas sp. SKA14] gi|219721845|gb|EED40370.1| flagellar biosynthesis hook protein [Stenotrophomonas sp. SKA14] Length = 407 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 18/184 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 FN+ L+ A LS A+N++N +T GF+ + +F+++ A + + S V Sbjct: 2 GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G TG LD A+ G+ +F + + +R G F+ G +V+ G Sbjct: 62 SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDASGFVVNPQG-- 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 + ++F G G+++ + L + D + G + Sbjct: 120 -------------ARLQVFAPNADGTNFDSGRIVD-LQLLTTDSAPKQTSEVKVGFTLPA 165 Query: 182 PPTP 185 P Sbjct: 166 NAKP 169 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG----ISPNIPPTPLEDLS 190 V E G + + K + + L + + QG + N+ S P T + D S Sbjct: 296 ITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNLWVDTFSSGTPRTGMPDTS 355 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ G LE S + ++ MI + F + +I ++ I Sbjct: 356 NLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVIN 405 >gi|119899027|ref|YP_934240.1| FlgE protein [Azoarcus sp. BH72] gi|119671440|emb|CAL95353.1| FlgE protein [Azoarcus sp. BH72] Length = 445 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 9/185 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F GL+ + + L +++N++N TVGF+ F+++ + + K Sbjct: 2 AFQQGLSGLNSSSKALDVISNNVANASTVGFKASNTIFADMYASAMTGGTSSLQVGIGSK 61 Query: 64 EYL---SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S G+ +T LD A+ G+ +F L G I +R+G+F V +G++V+A+G Sbjct: 62 VAAVTQSFTQGNLTATNNPLDMAINGNGFFRLSRSDGSIAYSRNGQFDVDRNGNIVNATG 121 Query: 120 ----KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + LD + + + + I+ + A++G+ + + + Sbjct: 122 EKLTGFQALDTSGTQTVFSGEPSVIYIDTT-NIAPRETGTASVGVNLDSSEKNPLNKNPV 180 Query: 176 GISPN 180 G N Sbjct: 181 GSDIN 185 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 73/219 (33%), Gaps = 34/219 (15%) Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL-DFALEGDAWFALESPRGIILTR 102 V G + ND+ + A + +G+ T + D + G+ F + TR Sbjct: 236 VYGRLSNDVVPDPADPALSTGAPLENLGTITFTNLGVPDSTIAGNGVFNV--------TR 287 Query: 103 DG----------RFKVTDDG--SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS- 149 G F + + SG V + +V G + Sbjct: 288 TGAQLGTGADDLNFTLDLSRSTQWNTDSG---VTTSPRQDGYTTGRLTGLSVSNTGVVQG 344 Query: 150 --QKGKV--IATMGLYSVDMSQGFVRRENSG---ISPNIPPTPLEDLSGV--TVKRGFLE 200 G+V IA + L + QG ++ + PT +GV +V G +E Sbjct: 345 TFSNGQVRDIARLALANFSSPQGLTSLGDNLWAESFESGQPTVGAPGTGVLGSVTAGQIE 404 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +SN + E+ MI + + + I ++ + + Sbjct: 405 ESNVDLTQELVSMIVQQRNYQANAQSIRTQDQILQTLVN 443 >gi|114330361|ref|YP_746583.1| flagellar hook protein FlgE [Nitrosomonas eutropha C91] gi|114307375|gb|ABI58618.1| flagellar basal body FlaE domain protein [Nitrosomonas eutropha C91] Length = 419 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 7/119 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFV 59 F GL+ A +L +N++N +TVGF+ + +FS+V +G KN I Sbjct: 2 GFQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFSDVFANSLGGGKNQIGIGTQVA 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A +E+ G+ S+ LD A+ G+ +F + I TR+G+F + DG LV+A+ Sbjct: 62 AIAQEF---AQGNVTSSDNPLDVAITGNGFFRTNNNGTISYTRNGQFHLDKDGFLVNAN 117 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 39/223 (17%) Query: 40 KFSEVVGAI--KNDIDQKISFVASGKEYLSKEVGSFIST-GTELDF-----ALEGDAWFA 91 F+ V GA+ N + ++F G L+ + ++T +D A++ W A Sbjct: 212 VFATVDGAVDTTNGLPLGVTFGGGGSTSLTFDSNGIMTTPTGPIDVTVDFQAIDATKWGA 271 Query: 92 LESPRGII---LTRDGRFKVTDDG-SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 + P LTR +F G ++++ G + +++ + GE Sbjct: 272 I--PDLTFSFDLTRSTQFG-NKFGVNMMNQDGFTS------------GRLAGYSISDNGE 316 Query: 148 I---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKR 196 I G + + + L G N+ + TP + G +++ Sbjct: 317 IRGSYTNGVTRTLGQLALAGFSNPNGLKPMGNNQWAETAESGLPLIGTPETGVLG-SLQS 375 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E+SN + E+ +I + + + I + M + Sbjct: 376 SAVEESNVDLTSELVSLIMTQRVYQANAKTIQTQDAVMQSIMN 418 >gi|254720773|ref|ZP_05182584.1| flagellar hook protein FlgE [Brucella sp. 83/13] gi|265985831|ref|ZP_06098566.1| flagellar hook protein flgE [Brucella sp. 83/13] gi|306840136|ref|ZP_07472921.1| flagellar hook protein FlgE [Brucella sp. NF 2653] gi|264664423|gb|EEZ34684.1| flagellar hook protein flgE [Brucella sp. 83/13] gi|306404781|gb|EFM61075.1| flagellar hook protein FlgE [Brucella sp. NF 2653] Length = 396 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + + + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELIDVLVN 393 >gi|306845419|ref|ZP_07477993.1| flagellar hook protein FlgE [Brucella sp. BO1] gi|306274162|gb|EFM55978.1| flagellar hook protein FlgE [Brucella sp. BO1] Length = 396 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPRGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|91204389|emb|CAJ70889.1| similar to flagellar hook protein [Candidatus Kuenenia stuttgartiensis] Length = 532 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 4/140 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G+ + + L + +N+SN +T G+++ ++ FS+++ K + G Sbjct: 6 ALYAGVTGIRSHQSWLDVIGNNLSNINTYGYKSSRLLFSDLISQDKGSGGVNPMQIGMGV 65 Query: 64 EYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + S G+ +T E DFA++GD +F L +R G F LV ++ Sbjct: 66 KVGSISSLFSQGTLEATNNEFDFAIQGDGFFVLNGGNKNFFSRVGTFATDASNQLVDSTT 125 Query: 120 KYPVLDMASVPIQIPQKDEI 139 Y +LD + I IP + Sbjct: 126 GYQILDSSGKTITIPYGSSV 145 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 10/108 (9%) Query: 142 VGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT-- 193 V G + IA + L + QG R ++ PL G Sbjct: 422 VDTDGTMYALYSNGTSSKIAQLQLATFGNVQGLRRSGDNLYEQTDSSGEPLYTTGGTGSA 481 Query: 194 --VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G+LE SN + E+ +I + F + +I ++ + EA+ Sbjct: 482 GDIYNGYLEASNVDMTSELTSLIMAQRGFQLNSRVISTADEVLAEAVN 529 >gi|289208114|ref|YP_003460180.1| fagellar hook-basal body protein [Thioalkalivibrio sp. K90mix] gi|288943745|gb|ADC71444.1| fagellar hook-basal body protein [Thioalkalivibrio sp. K90mix] Length = 408 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 5/144 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG-- 62 FNIGL+ + + L T +N+SN T GF+ + +F +V + Q + S Sbjct: 3 FNIGLSGLNSAQADLQTTGNNVSNAGTTGFKRSRAEFGDVFAQSFGGVSQTATGGGSRLM 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 G T LD A++G+ +F + + TR G F+V DG+LV+ G+ Sbjct: 63 AVTQQFSQGRTEFTENGLDLAIDGEGFFVMNDGGNRVYTRAGEFQVNRDGNLVNNQGQQL 122 Query: 123 VLDMASVPIQIPQKDEIFNVGEKG 146 PI D FN G+ G Sbjct: 123 ---QGYPPINPGSTDTDFNTGQLG 143 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ---KGK--VIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVT 193 ++ G + G+ V+ + L + QG + N+ + P+ G Sbjct: 297 VDIDSSGVVFARFTNGQSSVLGQVALANFTNPQGLEQLGNNNWAETFAAGDPVFASPGTG 356 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ +I + F + I ++ I Sbjct: 357 NLGEIQAGALEASNVDIAQELVNLITAQRNFQANAQTISTADQVTQTIIN 406 >gi|152990377|ref|YP_001356099.1| flagellar basal body and hook protein FlgE [Nitratiruptor sp. SB155-2] gi|151422238|dbj|BAF69742.1| flagellar basal body and hook protein FlgE [Nitratiruptor sp. SB155-2] Length = 533 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 10/129 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M SF G + A + L ++DN++N +T GF+ +V FS++V + Sbjct: 1 MLQSFYTGNSGLNANKTWLGVISDNIANVNTNGFKQERVNFSDLVASSLTTYSSSGAPRN 60 Query: 56 ---ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTD 110 GSF +T L AL+G+ +F +++P TR G F+V Sbjct: 61 KEIGGGAFVAGTIKDFSQGSFKNTNQPLSLALDGEGFFMVKNPSADLTYYTRAGDFRVDA 120 Query: 111 DGSLVSASG 119 +G +++ +G Sbjct: 121 NGDVINPAG 129 Score = 81.6 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 139 IFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDLSGV 192 +V E G I G+V +A + + + + VR+ ++ PN TP+ GV Sbjct: 422 SISVTEDGIIKGTYTNGQVKDVARLAVATFKDKEILVRKGDNLYLPNQQTFTPIIVPGGV 481 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 ++ G LE SN + E +I + + + I +++ + Sbjct: 482 ISKIRSGMLEMSNVDISQEFINLITAQRAYQANAKTITTSDQILQTT 528 >gi|254699262|ref|ZP_05161090.1| flagellar hook protein FlgE [Brucella suis bv. 5 str. 513] gi|254706497|ref|ZP_05168325.1| flagellar hook protein FlgE [Brucella pinnipedialis M163/99/10] gi|254711218|ref|ZP_05173029.1| flagellar hook protein FlgE [Brucella pinnipedialis B2/94] gi|254711818|ref|ZP_05173629.1| flagellar hook protein FlgE [Brucella ceti M644/93/1] gi|254714887|ref|ZP_05176698.1| flagellar hook protein FlgE [Brucella ceti M13/05/1] gi|256015898|ref|YP_003105907.1| flagellar hook protein [Brucella microti CCM 4915] gi|256030153|ref|ZP_05443767.1| flagellar hook protein FlgE [Brucella pinnipedialis M292/94/1] gi|256158332|ref|ZP_05456236.1| flagellar hook protein FlgE [Brucella ceti M490/95/1] gi|256252734|ref|ZP_05458270.1| flagellar hook protein FlgE [Brucella ceti B1/94] gi|260166795|ref|ZP_05753606.1| flagellar hook protein FlgE [Brucella sp. F5/99] gi|261216577|ref|ZP_05930858.1| flagellar hook protein flgE [Brucella ceti M13/05/1] gi|261219813|ref|ZP_05934094.1| flagellar hook protein flgE [Brucella ceti B1/94] gi|261313950|ref|ZP_05953147.1| flagellar hook protein flgE [Brucella pinnipedialis M163/99/10] gi|261318810|ref|ZP_05958007.1| flagellar hook protein flgE [Brucella pinnipedialis B2/94] gi|261319447|ref|ZP_05958644.1| flagellar hook protein flgE [Brucella ceti M644/93/1] gi|261749702|ref|ZP_05993411.1| flagellar hook protein flgE [Brucella suis bv. 5 str. 513] gi|261756173|ref|ZP_05999882.1| trypsin inhibitor Kunitz [Brucella sp. F5/99] gi|265987183|ref|ZP_06099740.1| flagellar hook protein flgE [Brucella pinnipedialis M292/94/1] gi|265996846|ref|ZP_06109403.1| flagellar hook protein flgE [Brucella ceti M490/95/1] gi|255998558|gb|ACU50245.1| flagellar hook protein [Brucella microti CCM 4915] gi|260918397|gb|EEX85050.1| flagellar hook protein flgE [Brucella ceti B1/94] gi|260921666|gb|EEX88234.1| flagellar hook protein flgE [Brucella ceti M13/05/1] gi|261292137|gb|EEX95633.1| flagellar hook protein flgE [Brucella ceti M644/93/1] gi|261298033|gb|EEY01530.1| flagellar hook protein flgE [Brucella pinnipedialis B2/94] gi|261302976|gb|EEY06473.1| flagellar hook protein flgE [Brucella pinnipedialis M163/99/10] gi|261736157|gb|EEY24153.1| trypsin inhibitor Kunitz [Brucella sp. F5/99] gi|261739455|gb|EEY27381.1| flagellar hook protein flgE [Brucella suis bv. 5 str. 513] gi|262551143|gb|EEZ07304.1| flagellar hook protein flgE [Brucella ceti M490/95/1] gi|264659380|gb|EEZ29641.1| flagellar hook protein flgE [Brucella pinnipedialis M292/94/1] Length = 396 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|190574263|ref|YP_001972108.1| flagellar hook protein FlgE [Stenotrophomonas maltophilia K279a] gi|190012185|emb|CAQ45808.1| putative flagellar hook protein [Stenotrophomonas maltophilia K279a] Length = 407 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 69/182 (37%), Gaps = 18/182 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 FN+ L+ A LS A+N++N +T GF+ + +F+++ A + + S V Sbjct: 2 GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G TG LD A+ G+ +F + + +R G F+ G +V+ G Sbjct: 62 SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDASGYVVNPQG-- 119 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 + ++F G G+++ + L + D G + Sbjct: 120 -------------ARLQVFAPNADGTNFDAGRMVD-LQLLTTDSPPKQTSEVKVGFTLPA 165 Query: 182 PP 183 Sbjct: 166 NA 167 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG----ISPNIPPTPLEDLS 190 V E G + + K + + L + + QG + N+ S P T + D S Sbjct: 296 ITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNLWVDTFSSGTPRTGMPDTS 355 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ G LE S + ++ MI + F + +I ++ I Sbjct: 356 NLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVIN 405 >gi|254695093|ref|ZP_05156921.1| flagellar hook protein FlgE [Brucella abortus bv. 3 str. Tulya] gi|261215444|ref|ZP_05929725.1| flagellar hook protein flgE [Brucella abortus bv. 3 str. Tulya] gi|260917051|gb|EEX83912.1| flagellar hook protein flgE [Brucella abortus bv. 3 str. Tulya] Length = 396 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|170725955|ref|YP_001759981.1| flagellar hook protein FlgE [Shewanella woodyi ATCC 51908] gi|169811302|gb|ACA85886.1| flagellar basal body FlaE domain protein [Shewanella woodyi ATCC 51908] Length = 453 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +++GF+ + +F++V N + Sbjct: 2 SFNIALSGISAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANSKTAVGGGATT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F + TR G FKV + LV + Sbjct: 62 SQVAQQFHQGSLQFTNNALDMAINGGGFFVTSSSLDSQDHTFTRAGAFKVDSNNYLVDSQ 121 Query: 119 GKY 121 G + Sbjct: 122 GNF 124 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIP-----PTPLE 187 VG G I G + A + L QG + N+ ++ Sbjct: 340 TNVEVGADGLINASYSNGSTVPLARVALARFANEQGLTQVGNTSWKASLDSGLALAGEAN 399 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + +++ LE SN + E+ +I + F + + ++ N ++ + + I Sbjct: 400 SGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNN-TLQQTVLQI 452 >gi|46578723|ref|YP_009531.1| flagella basal body rod domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603713|ref|YP_968113.1| hypothetical protein Dvul_2674 [Desulfovibrio vulgaris DP4] gi|46448135|gb|AAS94790.1| flagella basal body rod domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563942|gb|ABM29686.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] gi|311232595|gb|ADP85449.1| flagellar hook-basal body protein [Desulfovibrio vulgaris RCH1] Length = 498 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-------NDID 53 M G + ++ V +N++N +T+GF+ + + +++ + + I Sbjct: 1 MMHGLYTGATGMRTQAEGMNVVGNNLANVNTIGFKQSMMLYQDLMSQTEPTGSAYVSGIS 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 Q G + + G+ ++ DFA+ G +F + S + TR G F+ DG Sbjct: 61 QVGLGARVGDVRVLRSQGALLAGSDTTDFAISGKGFFQVTSGQDTHYTRAGNFRFNKDGQ 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 LV +G + + + P G +S K Sbjct: 121 LVDPNGFNLMGHAITGETEGPLAAVTLVKDADGRLSMPAKATG 163 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 V G +S K + + + ++ G + S ++ T Sbjct: 385 NLEVATDGIVSGKYSNGQSQSLFRVPIFRFTSEDGLRSEGMNHYSATTESGAAQEGKADT 444 Query: 194 -----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + LE SN + EM MI + F + + ++ + + +A+ Sbjct: 445 ENYGKLMGKSLEQSNVDMAREMVNMIVTQRGFQTNSKVVTTADTMIQKAL 494 >gi|294852968|ref|ZP_06793640.1| flagellar hook protein FlgE [Brucella sp. NVSL 07-0026] gi|294818623|gb|EFG35623.1| flagellar hook protein FlgE [Brucella sp. NVSL 07-0026] Length = 396 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPVLDMA 127 Y +LD Sbjct: 122 YY-LLDAG 128 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTDSELMDVLVN 393 >gi|330953721|gb|EGH53981.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 244 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS + T LD A+ GD +F L + + TR G F +G +V++S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSS 120 >gi|332187911|ref|ZP_08389644.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17] gi|332012072|gb|EGI54144.1| flagellar hook-basal body s family protein [Sphingomonas sp. S17] Length = 430 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 20/155 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SF L+ A + +S ++ N++N T GF+ + +F++V+ A + Q S Sbjct: 2 SFYTSLSGLQASQTDMSVISHNLANVGTNGFKKSRAEFADVMAANFSTDPFKQVGSGTVV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 + G++ ST LD A+ GD +F +++ TR+G F+V + + Sbjct: 62 KANRQEFKEGNYTSTSNALDLAISGDGFFTVQAGGTTGTLNYTRNGSFQVDTNNYVTDTQ 121 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 G ++F V + G ++ G Sbjct: 122 GNRL---------------QVFPVDKDGNVTSFGN 141 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 11/114 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS-----GISPNIPPTPLEDL 189 +VGE G I+ + + + + + G + NS G+S + Sbjct: 318 VSVGEDGLITASFSNGETAALGKVAVATFVNMPGLRQEGNSYWEATGMSGAAKFGTANEG 377 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + ++ +E SN + E+ +I + F + +D + + + + I NI S Sbjct: 378 AYGAIRSSTIEGSNVDITEELVNLIAAQRNFQANAKALDTSSQ-ISQTIFNIRS 430 >gi|94987008|ref|YP_594941.1| flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] gi|94731257|emb|CAJ54620.1| Flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] Length = 690 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVA 60 G++ L+ ++++ + +N++N +TVGF+ ++ F++ + I Q V Sbjct: 6 GMWTGVSGLLSHGEKMNVIGNNIANVNTVGFKGQRMDFADFIYQDGFSTAGITQIGRGVG 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSAS 118 G + GSF +T D A+ G +F + + TR G F+ +DG LV Sbjct: 66 IGAVMGNFGQGSFETTTEATDLAIGGRGFFKVKPQGSETSYYTRAGNFRFNNDGYLVDPH 125 Query: 119 GK 120 G Sbjct: 126 GY 127 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 10/111 (9%) Query: 139 IFNVGEKGE---ISQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV 192 ++V +G + G + + LY + QG R + S P + Sbjct: 577 NYSVNAEGVLFGVYSNGVQLPLYQVALYDFNSKQGLRREGGNLFSQTRESGDPSSGAANT 636 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + LE SN + E MI + F S + ++ ++ + + Sbjct: 637 SGFGSINANTLEGSNVDISTEFVSMIATQRGFQSNSKIVTTIDQMLETVVN 687 >gi|229592130|ref|YP_002874249.1| flagellar hook protein FlgE [Pseudomonas fluorescens SBW25] gi|229363996|emb|CAY51545.1| putative flagellar hook protein [Pseudomonas fluorescens SBW25] Length = 434 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 17/182 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 SFNIGL+ A ++L +N++N T GF++ + +FS++ A K Q + V Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFSDIYAASKLGTGQNSIGNGVNL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 G ++G LD A++G +F + G + TR G F+ DG + + +G Sbjct: 62 AAVSQQFTQGDVNNSGGVLDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGYITNNTGT 121 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + A+ G I + G + L + S ++ + Sbjct: 122 SRLQGYAA--------------DADGNIVKGGLTDLQLNLSYLPPKASTKVDSTSNLNSS 167 Query: 181 IP 182 P Sbjct: 168 SP 169 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 5/95 (5%) Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNA 204 Q+ K I + L S + QG + P D ++ LE+SN Sbjct: 338 QQSKAIGQISLASFNNEQGLQPSGGTTWRETFASGQPGYDTPQAGTLGSIVANSLENSNV 397 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N E+ +I + + I M I+ Sbjct: 398 NLTNELVDLIKAQSNYQANAKTISTQSTIMQTIIQ 432 >gi|229524192|ref|ZP_04413597.1| flagellar hook protein FlgE [Vibrio cholerae bv. albensis VL426] gi|229337773|gb|EEO02790.1| flagellar hook protein FlgE [Vibrio cholerae bv. albensis VL426] Length = 434 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 22/191 (11%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T LD + G +FA+ P+ LTR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNELTRNGAFHLDKNSFMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQK----DEIFNVGEKGEISQKGKVIATMGLYSVD 164 ++ VL PI IP + + N+ + G + L+ + Sbjct: 123 EFLLGYEVNPDTGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPANGDLKDP-TLFDIT 181 Query: 165 MSQGFVRRENS 175 + + R +S Sbjct: 182 DPETYNRTTSS 192 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + + + L V QG ++ + E Sbjct: 321 TKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ Sbjct: 381 KGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQ 432 >gi|269976274|ref|ZP_06183270.1| flagellar hook protein FlgE [Mobiluncus mulieris 28-1] gi|269935603|gb|EEZ92141.1| flagellar hook protein FlgE [Mobiluncus mulieris 28-1] Length = 472 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 14/136 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---------IKND 51 M S G++ + L ++N++N +T GF++ +F + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVKSGAAPRLNER 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G + S G+ +TG LD + GD +F L+ G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYP 122 + G +V+A G + Sbjct: 121 GLDAQGQVVAADGSFV 136 Score = 68.5 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGI---SPNIPPTPLEDLSG 191 F V G I + + +A + S G + S + P E SG Sbjct: 360 FGVEADGTIRGTFSNGDTRALAKIATASFSNPLGLEKAGASYFVESGNSGQPQIGEPGSG 419 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G +E SN + E +I + F + T +I +++ + E + Sbjct: 420 TRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANTRVITTSDEILQELV 468 >gi|23500854|ref|NP_700294.1| flagellar hook protein FlgE [Brucella suis 1330] gi|38257619|sp|Q8FUS9|FLGE_BRUSU RecName: Full=Flagellar hook protein FlgE gi|23464518|gb|AAN34299.1| flagellar hook protein FlgE [Brucella suis 1330] Length = 396 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|311030122|ref|ZP_07708212.1| Flagellar hook protein FlgE [Bacillus sp. m3-13] Length = 493 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 39/170 (22%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + A + +L + +N++N +T GF+ + F E++ + + Sbjct: 1 MLRSMYSSIGALRNFQTKLDVIGNNIANVNTYGFKKGRATFQEMMVQQLSGASGPAAGKG 60 Query: 61 S------------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--------- 99 + GS +T LD AL GD +FA+ S + Sbjct: 61 GVNAKQIGLGSMISTIDTIQTQGSLQTTARPLDLALSGDGFFAVASIADVTRVNVDSDTN 120 Query: 100 ------------------LTRDGRFKVTDDGSLVSASGKYPVLDMASVPI 131 TR G F + ++G +V+++G Y V + I Sbjct: 121 YGDNKILGGAVNNAVAMNYTRSGNFYLDNNGYIVNSNGMYMVGETGEKRI 170 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 20/129 (15%) Query: 131 IQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISP------ 179 IQIP F++ G+++ KV + L G R + Sbjct: 362 IQIPPNARSFSISGDGKVNFIDQFGDLKVAGQLMLAKFPNDAGLERIGENLFQQSNNSGT 421 Query: 180 ---NIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 N LE D ++ G LE SN + E +MI + F + T +I + Sbjct: 422 MDKNGDGIQLEEMFKPGDDGAASIISGTLEMSNVDLSEEFTEMITAQRGFQANTRIITTS 481 Query: 231 EKSMLEAIR 239 ++ + E + Sbjct: 482 DEILQELVN 490 >gi|268680906|ref|YP_003305337.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] gi|268618937|gb|ACZ13302.1| fagellar hook-basal body protein [Sulfurospirillum deleyianum DSM 6946] Length = 567 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 6/135 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK----FSEVVGAIKNDIDQKI 56 M +S G++ + + + +N+SN +T GF+ + FS ++ N + Sbjct: 1 MNSSLYNGVSGIKTSQFYIDVIGNNISNVNTNGFKGSTPEVSSLFSSILVGTYNSYSNGV 60 Query: 57 SFVASG-KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSL 114 A L G +T D AL + WF ++ G TR G F + +G+L Sbjct: 61 GMGAQSFNTALDMSQGILENTDNTFDLALGSEGWFGVQGADGNTYYTRAGSFSLDAEGNL 120 Query: 115 VSASGKYPVLDMASV 129 V G Y + + + Sbjct: 121 VDGDGNYLLATLGNN 135 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%) Query: 155 IATMGLYSVDMSQGFV--------RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +A + +Y QG + NSG + E G V LE SN + Sbjct: 472 VAKIAVYHFQNDQGLMAESSNLFSESSNSGKAFFYADESGESFLGSKVYSHKLEGSNVSL 531 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++I + + F++ I +++ + AI Sbjct: 532 ATALTELIIVQKAFDASAKSITTSDELLKNAIN 564 >gi|315452912|ref|YP_004073182.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] gi|315131964|emb|CBY82592.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] Length = 718 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 18/146 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A+EGD +F + RG+ TR G Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNLQNTDVKTDLAIEGDGFFVISPDRGVTRNFTRSG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVP 130 F +G+LV+ +G Y V P Sbjct: 120 EFLFDAEGNLVT-TGGYVVQGWVRDP 144 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + + S G S S + T +RG LE SN + Sbjct: 626 LAQVAMASFANDAGLQAIGGSVFSETGNSGKALIGAANTGRRGAVSGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|322378470|ref|ZP_08052922.1| flagellar hook protein FlgE [Helicobacter suis HS1] gi|321149114|gb|EFX43562.1| flagellar hook protein FlgE [Helicobacter suis HS1] Length = 718 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 18/146 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A+EGD +F + RG+ TR G Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNLQNTDVKTDLAIEGDGFFVISPDRGVTRNFTRSG 119 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVP 130 F +GSLV+ +G Y V P Sbjct: 120 EFLFDANGSLVT-TGGYVVQGWVRDP 144 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKRGF----LEDSNANSMYE 209 +A + L + G S S L + + G LE SN + Sbjct: 626 LAQVALANFANDAGLQADGGSVFSETSNSGKALIGAANTGRRGGVSGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|203287743|ref|YP_002222758.1| flagellar hook protein [Borrelia recurrentis A1] gi|201084963|gb|ACH94537.1| flagellar hook protein [Borrelia recurrentis A1] Length = 441 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N+SN +TVGF+ +V F +++ + + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNISNVNTVGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 GSF ST D + G+ +F L TR G F V Sbjct: 61 GVNPKQIGLGMTVATVDTIHTQGSFQSTQKASDLGISGNGFFILRDGDNSFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 + LV+ + + Sbjct: 121 DSNRHLVNPANGMRIQG 137 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 E + + + G I+ G + I + L S G + ++ + Sbjct: 327 ENYEIDQNGVITGVYSNGIRRTIGKIALASFVNPGGLAKAGDTNFTETSNSGQARIGETG 386 Query: 193 -----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ G LE +N + + MI + F + I +++ + E +R Sbjct: 387 FAGLGTIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 438 >gi|168334552|ref|ZP_02692708.1| hypothetical protein Epulo_06138 [Epulopiscium sp. 'N.t. morphotype B'] Length = 473 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + + ++ + +N++N +T+GF++ +V F++V Sbjct: 1 MMRSLFSGVSGLQSHQLKMDVIGNNIANVNTIGFKSQRVTFADVYYQTTQSATTANEMTG 60 Query: 61 SGKEYLSK--------------EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 G + GS T D +E DA F + G TR G F Sbjct: 61 LGGMNAMQIGLGTSVSSIDMLMTPGSAQRTDNPFDLMIEDDAMFIVSDATGTYYTRSGAF 120 Query: 107 KVTDDGSLVSASG 119 +V + G+LV +G Sbjct: 121 RVDERGTLVIPNG 133 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED-LSG 191 + F+VG G+I+ K++ + + D G + ++ + + Sbjct: 363 QGFDVGTDGKITAYYSNGDIKLLGQVAVTYFDNLAGLEKVADNVFKSTANSGDFDGVGAA 422 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E +MI + + + + I +++ + E I Sbjct: 423 GSFATGTLEMSNVDLSKEFTEMITTQRGYQASSKTITTSDEMLQELIN 470 >gi|326791535|ref|YP_004309356.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] gi|326542299|gb|ADZ84158.1| flagellar hook-basal body protein [Clostridium lentocellum DSM 5427] Length = 432 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 20/164 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----------KN 50 M S ++ + R+ + +N++N +T+G+++ +V F++V Sbjct: 1 MMRSMFSAVSGLRVHQTRMDVIGNNIANVNTIGYKSQRVTFNDVFSQTLSSASAASDETG 60 Query: 51 DIDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + V G S G+ T D + G+ + + G TR G Sbjct: 61 RGGRNPMQVGLGVNVSSIDMLMTQGAAQRTDNPFDLMINGEGFIVVGDTNGTYFTRAGAL 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNV--GEKGEI 148 + DG+L+ A+G + + Q+ ++ + + GE G I Sbjct: 121 RADVDGNLIIANG----MKVKGWTAQLNEETNKYEIVKGEAGSI 160 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-T 193 + +G G I+ +++A + + D +G + ++ + + V T Sbjct: 324 YEIGGDGVITASYDNGDMRILAQVVVAKFDNPEGLEKVGDNLYKVTPNSGEFDGIGTVGT 383 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G LE SN + E MI + F + + +I +++ + E Sbjct: 384 FNTGVLEMSNVDLSSEFTDMIVTQRGFQANSRIISVSDEMLQELTN 429 >gi|330899401|gb|EGH30820.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 348 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS + T LD A+ GD +F + + + TR G F +G +V++S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 >gi|119953082|ref|YP_945291.1| flagellar hook protein FlgE [Borrelia turicatae 91E135] gi|119861853|gb|AAX17621.1| flagellar hook protein FlgE [Borrelia turicatae 91E135] Length = 442 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + R+ V +N++N +T+GF+ +V F +++ + + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ GSF ST D + G+ +F L TR G F V Sbjct: 61 GVNPKQVGLGMSVATIDTIHTQGSFQSTQKASDLGISGNGFFILRDGNNSFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 + LV+ + + + I +++ N Sbjct: 121 DSNRCLVNPANGMRIQGWMAKSI---GGEQVINTSAD 154 Score = 68.5 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 E + + + G I G + I + L S G + ++ S Sbjct: 328 ENYEIDQNGIIMGVYSNGIRRDIGKIALASFVNPGGLAKVGDTNFSETSNSGQARIGETG 387 Query: 193 -----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGTIRAGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|330961196|gb|EGH61456.1| flagellar hook protein FlgE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 442 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---ISFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ K S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRTEFADQYAQSIRGTSGKSSVGSGVM 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + GS + T LD A+ GD +F L + + TR G F +G +V+++G Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSTG 121 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 K I L S QG + + + P G + LE+SN + Sbjct: 349 KTIGQTSLTSFANVQGLAQAGGTNWRETFDSGVPVSGAPQSGTLGYITGQ-ALEESNVDL 407 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 408 TMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 440 >gi|283850852|ref|ZP_06368138.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] gi|283573775|gb|EFC21749.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] Length = 551 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 21/182 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFV 59 TS G++ LA ++ST+ +N++N +TVGF+ + F +++ A Q V Sbjct: 7 TSMWSGVSGLLANSTKMSTIGNNLANVNTVGFKGARTDFMDLMSANIGTAAGDKQIGRGV 66 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--------------SPRGIILTRDGR 105 G G +T LD A+ G+ +F ++ + +R G Sbjct: 67 RVGTVVSDYSQGGLETTSNSLDMAINGNGFFMVKQKSQVGSNGKMLNTGNQTNYYSRAGN 126 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F DG LV+ G V +I + V + +S + I + L Sbjct: 127 FSFDSDGYLVTPQG-LAVQGWKVDQERIDAANASGTVLSQTPVSGE---IQDIRLSQFTS 182 Query: 166 SQ 167 Sbjct: 183 PA 184 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED---- 188 +V G ++ + + + + L + QG R ++ + + Sbjct: 437 NNVSVDADGILTGSFSNGQTQKLWALALANFTNLQGLSREGSNLYAATLESGQGTTNRAN 496 Query: 189 -LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S ++ LE SN + EM MI + F + + I + + E I+ Sbjct: 497 TGSVGSISGNTLESSNVDMATEMVSMILTQRGFEANSKTITTVDSMLSEVIQ 548 >gi|124268254|ref|YP_001022258.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] gi|124261029|gb|ABM96023.1| flagellar basal body and hook protein [Methylibium petroleiphilum PM1] Length = 420 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 76/195 (38%), Gaps = 7/195 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 SF GL+ A + L + +N++N T G ++ + +F +V N + + Sbjct: 2 SFQQGLSGLNAASKNLEIIGNNVANASTFGAKSSRAEFGDVYANALNGSGTNMVGIGVNL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 G+ +T +D A+ G +F + + + R+G+FK+ +G +V+ SG Sbjct: 62 ATVAQQFTQGNITTTDNPMDLAINGSGFFQVSDGKNPTMYARNGQFKIDREGFIVNNSGY 121 Query: 121 YPVL-DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + + +P + + + G + + + ++ V +G Sbjct: 122 KLLGYPADGQGVIVPGQAQAIQLPTAGI---APRATDRIAIEMNLDARQAVTTPATGGID 178 Query: 180 NIPPTPLEDLSGVTV 194 P + + VTV Sbjct: 179 FDDPATYNNATSVTV 193 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENS----GISPNIPPT 184 P + ++ G I G+ + L + QG N+ + P Sbjct: 303 PGQLSGISIEANGVIMARYSNGQSKPGGQLELANFRNPQGLQPLGNNVWATTFTSGDPVV 362 Query: 185 PLEDLSGVTVKR-GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + G LE+SN + E+ MI + + + + + M + Sbjct: 363 GAAGDGNFGVLQSGALEESNIDLTGELVNMITAQRVYQANAQTVKTQDSMMQTLVN 418 >gi|262276417|ref|ZP_06054226.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] gi|262220225|gb|EEY71541.1| flagellar hook protein FlgE [Grimontia hollisae CIP 101886] Length = 435 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 + NI L+ A ++ ++T ++N++N +T GF+ + +F +V A N S V + Sbjct: 2 ALNIALSGLAAAQKDMNTTSNNIANANTFGFKESRAEFGDVYSASIFSNAKTTTGSGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLVSA 117 GS I T LD + G+ +F++ + + +LTR+G F + D ++V++ Sbjct: 62 SIVAQQFHEGSSIYTNNPLDLRISGNGYFSVANDKLATQDNVLTRNGAFHLDKDNNIVNS 121 Query: 118 SGKYPVL 124 G++ + Sbjct: 122 EGQFLLG 128 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 13/114 (11%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLE 187 ++ KG I + + + + V QG + N+ I ++ Sbjct: 323 KVDIDPKGTIMATYSNGENVALGRVAMVRVSNQQGLSQAGNTQWKVTQQSGEAIWGEAMQ 382 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G VK G +E SN + E+ +I + F + + + E M + I I Sbjct: 383 GAFG-KVKSGTIEQSNIDMTQELVDLITAQRNFQANSRSL-EVGNQMQQTILQI 434 >gi|77463652|ref|YP_353156.1| flagellar hook protein FlgE [Rhodobacter sphaeroides 2.4.1] gi|77388070|gb|ABA79255.1| flagellar hook protein FlgE [Rhodobacter sphaeroides 2.4.1] Length = 423 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 20/206 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 S N L+ A + ++ + N++N T+GFR + +F++V + I + S V + Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSL 114 + + GS ++TG LD A+EG +FA E G I TR G F + +G Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121 Query: 115 VSASGK----YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLY-SVDMSQGF 169 ++ASG+ +PV Q+P + G + T + SVD+ Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTI-----PLTMGSPVGTSTVALSVDLPTDN 176 Query: 170 VRRENSGISPNIPP-TPLEDLSGVTV 194 P P + + V Sbjct: 177 AMLGTQAAVPPAAAFDPADPTTYAAV 202 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 V G + + + L + Q + SG + P+ +G Sbjct: 309 TSLEVDASGTVWAAYGAGSPVAMGQVVLVTFANPQALRQLGASGFAATADSGQPVAGTAG 368 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ G LE +N + E+ +I + + + ++ + M + Sbjct: 369 DSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTIMN 420 >gi|302134834|ref|ZP_07260824.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 441 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V+ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V++ G Sbjct: 62 TAAVSQQFSQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSGG 121 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG----ISPNIPPTPLED 188 +V G + K +VI L + QG + + + +P + + + Sbjct: 328 SAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGVPE 387 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|161621182|ref|YP_001595068.1| flagellar hook protein FlgE [Brucella canis ATCC 23365] gi|254702383|ref|ZP_05164211.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] gi|260568714|ref|ZP_05839183.1| flagellar hook protein FlgE [Brucella suis bv. 4 str. 40] gi|261752946|ref|ZP_05996655.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] gi|161337993|gb|ABX64297.1| flagellar basal body FlaE domain protein [Brucella canis ATCC 23365] gi|260155379|gb|EEW90460.1| flagellar hook protein FlgE [Brucella suis bv. 4 str. 40] gi|261742699|gb|EEY30625.1| flagellar hook protein FlgE [Brucella suis bv. 3 str. 686] Length = 396 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVHYGISDQGGIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|304438415|ref|ZP_07398355.1| flagellar hook protein FlgE [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368498|gb|EFM22183.1| flagellar hook protein FlgE [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 678 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 25/161 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ + R+ V +N++N +T GF+ +V F++++ + + Sbjct: 1 MIRSMFSAVSGLKGHQTRMDVVGNNIANVNTTGFKASRVTFADMISQNLSGASSPTGTIG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFK 107 L GS TG D A+ GD F + + TR+G F Sbjct: 61 GVNPKQIGLGMSVASTDLLYTNGSVQQTGKNTDVAISRGDGLFVVSKGQQKFYTRNGAFS 120 Query: 108 VTDDGSLV------------SASGKYPVLDMASVPIQIPQK 136 +G+L + +G V + IQIP Sbjct: 121 FDAEGNLTIPSTGLYVQGYMANNGVLNVAGDNTTKIQIPAG 161 Score = 65.4 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP----LED 188 ++ G I+ + A + + + G + + + Sbjct: 565 SSVDIDSTGVITGTYTNGVRQKEAQIAMAQFNNPSGLTKMGGNLYQESNNSGTRTISGAS 624 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE SN + + MI + F S + +I +++ + I Sbjct: 625 DIGTELTTSALEMSNVDLADQFSDMIITQRGFQSNSKMITVSDEMLETLIN 675 >gi|74317652|ref|YP_315392.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] gi|74057147|gb|AAZ97587.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] Length = 405 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SF GL+ A + L + +N+SN TVGF+ + +F++V V Sbjct: 2 SFQQGLSGLNAAAKNLDVIGNNVSNASTVGFKQSQAQFADVYANSLTGAGGSSIGIGVKV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G+ ST LD A+ G +F +++ I R+G+F++ +G +V+ +G Sbjct: 62 AQVAQQFTQGNITSTNNPLDMAINGGGFFRMDNGGEIAYQRNGQFQLDKNGYIVNPTGG 120 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 FN+G G I G+ V+ + L + G + N+ + TP Sbjct: 294 FNIGADGTILGRYTNGQSAVLGQVVLANFANPNGLQQMGNNLWTETATSGTPLVGTPDSG 353 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV ++ +EDSN + E+ MI + + + I + + + Sbjct: 354 GLGV-LQSSAVEDSNVDLTAELVNMITAQRVYQANAQTIKSQDAVLQTLVN 403 >gi|221639495|ref|YP_002525757.1| Flagellar hook protein FlgE [Rhodobacter sphaeroides KD131] gi|221160276|gb|ACM01256.1| Flagellar hook protein FlgE [Rhodobacter sphaeroides KD131] Length = 423 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 S N L+ A + ++ + N++N T+GFR + +F++V + I + S V + Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSL 114 + + GS ++TG LD A+EG +FA E G I TR G F + +G Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121 Query: 115 VSASGK----YPVLDMASVPIQIPQKDEIFNV 142 ++ASG+ +PV Q+P + Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTI 153 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 34/177 (19%) Query: 97 GIILTRD-GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF--------NVGEKG- 146 G LT G G+L +G + + + V + G Sbjct: 244 GEPLTPAQGDLTFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDGK 303 Query: 147 --------EISQKGKV-----------IATMGLYSVDMSQGFVRRENSGISPNIP-PTPL 186 E+ G V + + L + Q + SG + P+ Sbjct: 304 SASALTSLEVDASGTVWAAYGAGSPVAMGQVVLVTFANPQALRQLGASGFAATADSGQPV 363 Query: 187 EDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + ++ G LE +N + E+ +I + + + ++ + M + Sbjct: 364 AGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTIMN 420 >gi|292669794|ref|ZP_06603220.1| flagellar hook protein FlgE [Selenomonas noxia ATCC 43541] gi|292648591|gb|EFF66563.1| flagellar hook protein FlgE [Selenomonas noxia ATCC 43541] Length = 680 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 25/161 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T GF+ +V F++++ + + Sbjct: 1 MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGAASPNGNIG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFK 107 L GS TG D A+ GD F ++ TR+G F Sbjct: 61 GVNPKQVGLGMSVASTDLIYTNGSVQQTGKNTDIAISRGDGLFVVKRGEQQFYTRNGAFS 120 Query: 108 VTDDGSLV------------SASGKYPVLDMASVPIQIPQK 136 +G+L + +G V + I+IP Sbjct: 121 FDAEGNLTIPSTGLYVQGYMANNGVLAVGGDNTTKIRIPAG 161 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 9/110 (8%) Query: 139 IFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP----LEDL 189 ++ G I+ + A + + + G + + + Sbjct: 568 SVDIDSSGVITGTYTNGVRQKEAQIAMAQFNNPSGLTKMGGNLYQESNNSGTRTISGASD 627 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE SN + + MI + F S + +I +++ + I Sbjct: 628 IGTELTTSALEMSNVDIADQFSDMIITQRGFQSNSKIITVSDEMLETLIN 677 >gi|28869140|ref|NP_791759.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|213967582|ref|ZP_03395730.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|301385713|ref|ZP_07234131.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato Max13] gi|302060075|ref|ZP_07251616.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato K40] gi|28852380|gb|AAO55454.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|213927883|gb|EEB61430.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|331017026|gb|EGH97082.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 441 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V+ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V++ G Sbjct: 62 TAAVSQQFSQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSGG 121 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG----ISPNIPPTPLED 188 +V G + K +VI L + QG + + + +P + + + Sbjct: 328 SAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGVPE 387 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGYITGQALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|54308097|ref|YP_129117.1| flagellar hook protein FlgE [Photobacterium profundum SS9] gi|46912523|emb|CAG19315.1| putative flagellar hook protein FlgE [Photobacterium profundum SS9] Length = 435 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 FNI L+ A ++ L+T ++N++N +T GF+ + +F +V + N V + Sbjct: 2 GFNISLSGIGASQKDLNTTSNNIANANTYGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSA 117 GS I T +D + G +FA+ P+ LTR+G F + D +V++ Sbjct: 62 SVVAQQFHEGSSIYTNNPMDLRISGSGFFAVADDKLQPQNSNLTRNGAFHLNKDNQIVNS 121 Query: 118 SGKYPVL 124 G+Y + Sbjct: 122 EGQYLLG 128 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 11/113 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----ED 188 ++ KG I + + +G+ V QG V + + + Sbjct: 323 KVDIDAKGSIVATYSNGENVTLGRVGMVRVANEQGLVSKGGTQWATGQDSGAAIWGEASQ 382 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + +VK G LE SN + E+ +I + F + + + E + + + I I Sbjct: 383 GAFGSVKSGTLEQSNIDMTQELVDLITAQRNFQANSRAL-EVDNQLQQTILQI 434 >gi|90021855|ref|YP_527682.1| ribonuclease III [Saccharophagus degradans 2-40] gi|89951455|gb|ABD81470.1| flagellar basal body FlaE [Saccharophagus degradans 2-40] Length = 804 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASG 62 F+ L+ A LS +N++N T GF+ + +F +V + ++ S V Sbjct: 3 FDTALSGIRAASSDLSVTGNNIANASTTGFKASRAEFGDVYATSVLGAGVNAIGSGVQVQ 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ T ELD A+ G+ +F + + TR G F + D+G +V+ +G Sbjct: 63 EVAQRFSQGNVGFTENELDLAINGNGFFVVSQQGETLYTRAGSFGLDDEGYVVNNTG 119 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE-----------ISQKGKVIA 156 V DG+ A G +L + + P F + +G ISQ G Sbjct: 629 VDADGNPNGALGPQNILAGGTQTVVEPPTSSNFVISLEGTTQFGSEFSVNDISQNGFSTG 688 Query: 157 TMG--------------------------LYSVDMSQGFVRRENSGISPNIP------PT 184 + L QG N+ + T Sbjct: 689 RLSGLNIADNGTIFARFTNGQSLRLGQVVLADFSNQQGLQPTGNTMWAETFESGSPNVGT 748 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P G V+ G LE+SN + ++ +I + F + I+ + I Sbjct: 749 PGSAALGA-VQAGALEESNVDLSEQLVNLIIAQRNFQASAKTIETADAVTQTIIN 802 >gi|330502734|ref|YP_004379603.1| flagellar hook protein FlgE [Pseudomonas mendocina NK-01] gi|328917020|gb|AEB57851.1| flagellar hook protein FlgE [Pseudomonas mendocina NK-01] Length = 456 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 10/188 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNIGL+ A L+ +N++N T GF+ + +F+++ + + + + S V Sbjct: 2 SFNIGLSGLRAATSDLNVTGNNIANAGTAGFKQSRAEFADLYASSMLGTGKNPQGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ T LD A+ G+ +F + + TR G F DG +V+ G Y Sbjct: 62 ADVAQLFNQGNINYTQNALDMAINGNGFFMTSNNGEMSYTRSGYFGTDRDGYIVNNFG-Y 120 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV--IATMGLYSVDMSQGFVRRENSGISP 179 + A+ I V +S + T ++++ VR N+G Sbjct: 121 RLQGYAA-----DDSGNILPVQSDLRVSAGQQEPKATTTVTQRINLNSNAVRPANAGTMA 175 Query: 180 NIPPTPLE 187 P + Sbjct: 176 APTFDPSD 183 Score = 55.0 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 V + G I G+ V + L + QG + + TP Sbjct: 345 IEVDDTGIIFARYTNGQSKVQGQVLLANFANVQGLSPVGKTAWVQSFESGEPVIGTPRSS 404 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LEDSN ++ +I + + + I+ I Sbjct: 405 TLGA-LQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIIN 454 >gi|153951334|ref|YP_001397315.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938780|gb|ABS43521.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97] Length = 545 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 11/218 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKI 56 M SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYNTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS I++ E D AL+G +F + G TR+G FK +G LV Sbjct: 61 YGSGAASSQVVFEQGSPIASDGEFDVALQGKGFFGVLEADGNAYYTRNGSFKRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G + + M P+ G G+ G + + + + Sbjct: 121 DSYGNFVLGTMN--PVFTGMNYSDRVAGLMGDYLNTGTPVNNGFTVNSNNPFSIGTTVSQ 178 Query: 176 GISPNIPPTPLEDLSGVTVK-RGFLEDSNANSMYEMGQ 212 G L VK G L N N++ E+ + Sbjct: 179 GAIKVPVNMYLPPQVTQNVKWSGSL---NTNTITEVVK 213 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVVNTAKFKGGFLEQSNVDLSTELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|126462484|ref|YP_001043598.1| flagellar basal body FlaE domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104148|gb|ABN76826.1| flagellar basal body FlaE domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 423 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 20/206 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 S N L+ A + ++ + N++N T+GFR + +F++V + I + S V + Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSL 114 + + GS ++TG LD A+EG +FA E G I TR G F + +G Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121 Query: 115 VSASGK----YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLY-SVDMSQGF 169 ++ASG+ +PV Q+P + G + T + SVD+ Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTI-----PLTMGSPVGTSTVALSVDLPTDN 176 Query: 170 VRRENSGISPNIPP-TPLEDLSGVTV 194 P P + + V Sbjct: 177 AMLGTQAAVPPAAAFDPADPTTYAAV 202 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 34/177 (19%) Query: 97 GIILTRD-GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF--------NVGEKG- 146 G LT G G+L +G + + + V + G Sbjct: 244 GEPLTPAQGDLTFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDGK 303 Query: 147 --------EISQKGKV-----------IATMGLYSVDMSQGFVRRENSGISPNIP-PTPL 186 E+ G V + + L + Q + SG + P+ Sbjct: 304 SASALTSLEVDASGTVWAAYGAGSPVAMGQVVLVTFANPQALRQLGASGFAATADSGQPV 363 Query: 187 EDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + ++ G LE +N + E+ +I + + + ++ + M + Sbjct: 364 AGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTIMN 420 >gi|332558508|ref|ZP_08412830.1| FlgE [Rhodobacter sphaeroides WS8N] gi|12057218|gb|AAF14370.2|AF133240_4 flagellar hook protein FlgE [Rhodobacter sphaeroides] gi|332276220|gb|EGJ21535.1| FlgE [Rhodobacter sphaeroides WS8N] Length = 423 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 S N L+ A + ++ + N++N T+GFR + +F++V + I + S V + Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSISRTAVGSGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSL 114 + + GS ++TG LD A+EG +FA E G I TR G F + +G Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNAEGVA 121 Query: 115 VSASGK----YPVLDMASVPIQIPQKDEIFNV 142 ++ASG+ +PV Q+P + Sbjct: 122 INASGQKLLAWPVSVEGDALSQVPGSATPLTI 153 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 34/177 (19%) Query: 97 GIILTRD-GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF--------NVGEKG- 146 G LT G G+L +G + + + V + G Sbjct: 244 GEPLTPAQGDLTFDATGALSGGTGALSFTAASGNSYTLDLTETQLADRSFEVNTVSQDGK 303 Query: 147 --------EISQKGKV-----------IATMGLYSVDMSQGFVRRENSGISPNIP-PTPL 186 E+ G V + + L + Q + SG + P+ Sbjct: 304 SASALTSLEVDASGTVWAAYGAGSPVAMGQVVLVTFANPQALRQLGASGFAATADSGQPV 363 Query: 187 EDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + ++ G LE +N + E+ +I + + + ++ + M + Sbjct: 364 AGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTIMN 420 >gi|116250500|ref|YP_766338.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae 3841] gi|115255148|emb|CAK06222.1| flagellar hook protein (agr_c_1012p) [Rhizobium leguminosarum bv. viciae 3841] Length = 433 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 16/192 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTVADN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLP-SSGGNYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F ++ G +LTR G F D+G+LV+A+G Sbjct: 65 RQAVSDQGDISYTTSSTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAAGFQL 124 Query: 123 VL---DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + D S + + D + V + GL ++ + G + + Sbjct: 125 MGYSYDAGSPAVVVNGFDGLVPVN-----------VNQEGLTAIASTSGVFKGNLDSGAN 173 Query: 180 NIPPTPLEDLSG 191 + + Sbjct: 174 VVSTAADRPSAN 185 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 12/126 (9%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRE 173 + Q + V G + K K + + L +V G V Sbjct: 306 GTGTPNGQAASPVKDVTVDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSA 365 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + P + G T+K G LE SN + E+ +MI + + + + + Sbjct: 366 NGQSGVTVTGFPQTNGLG-TIKAGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDI 424 Query: 234 MLEAIR 239 M + Sbjct: 425 MDVLVN 430 >gi|261211322|ref|ZP_05925610.1| flagellar hook protein FlgE [Vibrio sp. RC341] gi|260839277|gb|EEX65903.1| flagellar hook protein FlgE [Vibrio sp. RC341] Length = 434 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YVSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T LD + G +FA+ P+ LTR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNELTRNGAFHLDKNSFMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 ++ VL PI IP + E+ + L+ + Sbjct: 123 EFLLGYEVNPDTGDVLSYEPKPINIPPQFGKPKQTANIELGANLPANGDLKDPALFDITD 182 Query: 166 SQGFVRRENS 175 + + R +S Sbjct: 183 PETYNRTTSS 192 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + + + L V QG ++ + E Sbjct: 321 TKIDFDENGSVLATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ Sbjct: 381 KGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQ 432 >gi|242309658|ref|ZP_04808813.1| flagellar hook protein [Helicobacter pullorum MIT 98-5489] gi|239523659|gb|EEQ63525.1| flagellar hook protein [Helicobacter pullorum MIT 98-5489] Length = 750 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 14/134 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ A + L ++N++N +T GF+ + FS +V K + Sbjct: 1 MLRSLWSGVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRSATIPYAGYG 60 Query: 61 SGKEYL------------SKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 +Y GS +T + D ALEG+ F + + G + TRDG F Sbjct: 61 GVNDYSVGLGTGIETTTKVFSQGSLQNTDRKADLALEGNGMFVVSNNGGFTNMYTRDGAF 120 Query: 107 KVTDDGSLVSASGK 120 G+LV+ SG Sbjct: 121 SFDAVGNLVTTSGY 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYE 209 +A + + + +G ++ S + + T ++ LE SN + Sbjct: 658 LAQVAVATFANYEGLQESGSNLYSESPNSGQATIGTAGTGGRANIQASKLEMSNTDLSRG 717 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + Q+I + + F + + I +++ + + Sbjct: 718 LTQLIVVQRGFQASSKSITTSDQILNTLL 746 >gi|78485812|ref|YP_391737.1| hypothetical protein Tcr_1471 [Thiomicrospira crunogena XCL-2] gi|78364098|gb|ABB42063.1| Flagellar hook protein FlgE [Thiomicrospira crunogena XCL-2] Length = 538 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 ++ A Q L +++N++N T+G+++ + +FS++ ++ + + +++ Sbjct: 8 TAVSGLNAASQGLGVISNNLANAQTMGYKSSRAEFSDMFYGAQSTPGNGVRVDSITQDFT 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSASGK 120 + G+ TG +LD A++GD +F LE G TR+G FK+ DG + S G Sbjct: 68 N---GTITDTGRDLDMAIDGDGFFILEDRTGKYENVYTRNGSFKLDKDGYVTSQEGN 121 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 51/133 (38%), Gaps = 12/133 (9%) Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRE 173 G Y + + I ++ G+ G I G+ +A +G+ + + + Sbjct: 408 GSYNLRGVTQNGYAIGDLVGVYT-GKDGVIEARYSNGRSVPVAQLGMANFNDKNALEKLG 466 Query: 174 NSGISPNIPPTPLEDLSG-----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 + + ++ + ++ G LE SN ++ E+ MI + + + +I Sbjct: 467 GQSYAESFASGAVQIGTSERNGYGSINAGALEYSNVDTAGELVHMIQTQRTYQASAQVIQ 526 Query: 229 ENEKSMLEAIRNI 241 + +++ + I + Sbjct: 527 TS-QTLTQTILQL 538 >gi|330875983|gb|EGH10132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 441 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V+ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V+++G Sbjct: 62 TAAVSQQFSQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSAG 121 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 +V G + K +VI L + QG + + + TP Sbjct: 328 SAMSVDSTGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGTPQ 387 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGSITGQ-ALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|330880522|gb|EGH14671.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] Length = 390 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V++ G Sbjct: 62 TAAVSQQFSQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSGG 121 >gi|91776309|ref|YP_546065.1| flagellar hook protein FlgE [Methylobacillus flagellatus KT] gi|91710296|gb|ABE50224.1| protein of unknown function DUF1078-like protein [Methylobacillus flagellatus KT] Length = 410 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 +F GL+ A + + + +N++N TVGF+ + +F++V + + + Sbjct: 2 AFQQGLSGLNAASKNIEVIGNNVANASTVGFKQSRTEFADVYANSLGGGNASKIGIGTKI 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ ++ LD A+ G+ +F + I +R+G+F++ DG + +A+G+ Sbjct: 62 AAITQQFTQGNISNSQNPLDVAINGNGFFRMSDNGAITYSRNGQFQLDKDGYIQNAAGQ 120 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTP----LED 188 F++G G I G+ V+ + L + G ++ + P + + Sbjct: 297 SSFSIGADGSILGRYSNGRSSVLGQVALANFRNLNGLQPLGDNQWAETSESGPPIVGVAN 356 Query: 189 LSGVTVKRGF-LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+ V + + LEDSN + E+ MI + + + I ++ M + Sbjct: 357 SGGLGVLQSYRLEDSNVDLTAELVNMITAQRVYQANAQTIKTEDQIMQTLVN 408 >gi|88704306|ref|ZP_01102020.1| Flagellar hook protein FlgE [Congregibacter litoralis KT71] gi|88701357|gb|EAQ98462.1| Flagellar hook protein FlgE [Congregibacter litoralis KT71] Length = 429 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 11/198 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 +F+ ++ A L V++N++N T GF+ + +F++ ++GA N I + +S Sbjct: 2 AFSTAISGINAATADLGVVSNNIANASTTGFKASRAEFADVYATSLLGAGSNAIGKGVSL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 +E+ G+ T LD A+ G+ +F L + TR G F+V +G LVS Sbjct: 62 AGVTQEF---GQGNITFTNNSLDLAINGNGFFQLSVEGAVEYTRAGNFQVDREGFLVSNQ 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGE---KGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + + + + + + + V GF Sbjct: 119 NARLQGFQVDGGGDVTGQLGDIQIDTSLIDPNPTSNVSLTSNLDSREVTTGTGFATNGPY 178 Query: 176 GISPNIPPTPLEDLSGVT 193 P P T Sbjct: 179 DAFAVPPTAPSPADFNAT 196 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 + + + L S + G ++ + +P G + V+ LEDSN Sbjct: 336 RALGQIALASFNNQNGLQPVGDTNWVETFSSGSPNVGEPGTSGLGAVQSAALEDSNVEIT 395 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + F + +I + I Sbjct: 396 QELVDLIVAQRNFQANAQVIQAEDAITQTVIN 427 >gi|309388826|gb|ADO76706.1| flagellar hook-basal body protein [Halanaerobium praevalens DSM 2228] Length = 548 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + +Q + +N+SN +TVGF++ +V F E++ Sbjct: 1 MLRSMYAGVSGLNSHQQMMDVTGNNISNVNTVGFKSSRVTFKEMLSQTIRGASAPQENRA 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q V G G+ STG D A++GD +F L + +R G F Sbjct: 61 GTNPQQVGLGVGVGSIDSDMSSGNLQSTGKTSDVAIQGDGFFVLRDGSTEVYSRAGNFNF 120 Query: 109 TDDGSLVSASGKYPVLD 125 + G L S+S V Sbjct: 121 DEQGRLYSSSTGMLVQG 137 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRREN-----SGISPNIPPTPLE 187 E F+ E G+I + ++ + + + G R+E S P + Sbjct: 435 ESFSFTETGDIVGSFSNGLTQIQGKIAMANFANPAGLSRQEGVFEATSNSGEAGIGEPAQ 494 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ LE SNAN E MI + F + + LI +++ + E + Sbjct: 495 GGFG-SLAPSTLEMSNANLSQEFTNMITAQRGFQANSKLITTSDEMLQELVN 545 >gi|237799206|ref|ZP_04587667.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806225|ref|ZP_04592929.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022061|gb|EGI02118.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027338|gb|EGI07393.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 442 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK---ISFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ K S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRTEFADQYAQSIRGTSGKSSVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + GS + T LD A+ GD +F L + + TR G F +G +V++SG Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMLSNNGEKLFTRAGAFHTDKEGYVVNSSG 121 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +VI L S QG + + + P G + LE+SN + Sbjct: 349 QVIGQTSLTSFANVQGLAQAGGTNWRETFSSGVPVSGAPQSGTLGYITGQ-ALEESNVDL 407 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 408 TVELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 440 >gi|330986468|gb|EGH84571.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 441 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V++ G Sbjct: 62 TAAVSQQFSQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSGG 121 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 +V G + K +VI L + QG + + + TP Sbjct: 328 SAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGTPQ 387 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGYITGQ-ALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|237753142|ref|ZP_04583622.1| flagellar hook protein FlgE [Helicobacter winghamensis ATCC BAA-430] gi|229375409|gb|EEO25500.1| flagellar hook protein FlgE [Helicobacter winghamensis ATCC BAA-430] Length = 758 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ A + L ++N++N +T GF+ + FS +V K + Sbjct: 1 MLRSLWSGVSGMQAHQIALDVESNNIANVNTTGFKYSRADFSTMVSQTKRSATIPYAGYG 60 Query: 61 SGKEYL------------SKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 ++ E GS +T + D ALEG F + + G + TRDG F Sbjct: 61 GVNDFSVGLGTGIETTTKIFEQGSLQNTDRKGDLALEGKGMFVVSNNGGYSNMYTRDGAF 120 Query: 107 KVTDDGSLVSASG 119 G+LV+ SG Sbjct: 121 MFDAVGNLVNTSG 133 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDLSG--VTVKRGFLEDSNANSMYE 209 +A + + + +G ++ + + T +G +V LE SNA+ Sbjct: 666 LAQVAIATFANYEGLQESGSNLFAESANSGRATIGTAGTGGRASVAASKLEMSNADLSRG 725 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + Q+I + + F + + I ++ + + Sbjct: 726 LTQLIVVQRGFQANSKSITTADQVLNTLL 754 >gi|330943207|gb|EGH45614.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str. 1704B] Length = 368 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS + T LD A+ GD +F + + + TR G F +G +V++S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 >gi|260767769|ref|ZP_05876704.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|260617278|gb|EEX42462.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|315179399|gb|ADT86313.1| flagellar hook protein FlgE [Vibrio furnissii NCTC 11218] Length = 434 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTPGGGVQANK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P+ LTR+G F + + +V+++ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRLVPQQNELTRNGAFHLDKNNYMVTSND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 +Y VL P+ IP + E+ + L+ Sbjct: 123 EYLLGYQVNPDTGDVLSYEPAPLNIPAEFGKPKQTSNIEVGVNLPANGDLKDPTLFDFTD 182 Query: 166 SQGFVRRENS 175 + R +S Sbjct: 183 PDTYNRSTSS 192 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ I + L V QG ++ + E Sbjct: 321 TKIDFDENGSVLGTYSNGENITLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 381 KGSFGTINNGTLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 432 >gi|227876747|ref|ZP_03994856.1| flagellar hook protein [Mobiluncus mulieris ATCC 35243] gi|306817694|ref|ZP_07451436.1| flagellar hook protein FlgE [Mobiluncus mulieris ATCC 35239] gi|227842644|gb|EEJ52844.1| flagellar hook protein [Mobiluncus mulieris ATCC 35243] gi|304649508|gb|EFM46791.1| flagellar hook protein FlgE [Mobiluncus mulieris ATCC 35239] Length = 466 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 15/201 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---------IKND 51 M S G++ + L ++N++N +T GF++ +F + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVRSGAAPRLNER 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G + S G+ +TG LD + GD +F L+ G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 + G +V+A G + A + + N+ S K + ++ +M Sbjct: 121 GLDAQGQVVAADGSFVQGWKADTKGIVNASGQPGNITLPLTQSMKANPTTQV-IFGGNMP 179 Query: 167 QGFVRRENSGISPNIPPTPLE 187 + + S +PN + Sbjct: 180 ADQLYNDPSMQNPNTAGNAKQ 200 Score = 65.4 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 13/129 (10%) Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN 174 + V + P F V G I + +A + S G + Sbjct: 337 NFAVDQVDGNP---AGTLTGFGVEADGTIRGTFSNGSSRALAKIATASFSNPLGLEKAGA 393 Query: 175 SGI---SPNIPPTPLEDLSGVT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 S + P E SG + G +E SN + E +I + F + T +I Sbjct: 394 SYFVESGNSGQPQIGEPGSGTRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANTRVITT 453 Query: 230 NEKSMLEAI 238 +++ + E + Sbjct: 454 SDEILQELV 462 >gi|146307869|ref|YP_001188334.1| flagellar hook protein FlgE [Pseudomonas mendocina ymp] gi|145576070|gb|ABP85602.1| flagellar basal body FlaE domain protein [Pseudomonas mendocina ymp] Length = 438 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNIGL+ A + L+ +N++N T GF+ + +F++V A + + + S V Sbjct: 2 SFNIGLSGLRAATKDLNVTGNNIANAGTAGFKQSRAEFADVYAASVLGTGSNPQGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G G+ T LD A+ G+ +F + I TR G F +G +V+ G Sbjct: 62 GDISQLFNQGNINYTQNALDLAINGNGFFVTSNNGEISYTRAGYFGTDREGFMVNNFGY 120 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 + + G I G+ V + L + QG + + TP Sbjct: 327 LEIDDTGVIFARYTNGQSKVQGQVVLANFANVQGLTPVGKTAWVQSFQSGEPVVGTPRAG 386 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LEDSN ++ +I + + + I+ I Sbjct: 387 TLGA-LQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIIN 436 >gi|152985192|ref|YP_001349650.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PA7] gi|150960350|gb|ABR82375.1| flagellar hook protein [Pseudomonas aeruginosa PA7] Length = 462 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 3/129 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNIGL+ A L+ +N++N TVGF+ + +F++V A + + + + S V Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+F +T + LD A+ G+ +F + I TR G F +V +G Y Sbjct: 62 SDISQMFKQGNFETTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNG-Y 120 Query: 122 PVLDMASVP 130 + A P Sbjct: 121 RLQGYAVGP 129 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGVT 193 + E G + G+ V + L + QG S + + P Sbjct: 351 LEIDETGVVFARYTNGQSKVQGQVVLANFANIQGLTPIGKTSWVQSSESGEPAVGAPRSG 410 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ +I + + + I + I Sbjct: 411 TLGALQSGALEASNVDISSELVNLIVHQRNYQANAKTIQTEDAVTQTIIN 460 >gi|218674739|ref|ZP_03524408.1| flagellar hook protein FlgE [Rhizobium etli GR56] Length = 433 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 7/149 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTVADN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMNAQANRLSTVADNIANVNTSGYKAVSTSFSSLVLP-SSGGNYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F ++ G +LTR G F+ D+G+LV+++G Sbjct: 65 RQAVSDQGDISYTTSTTDLAISGDGFFIVQGADGTPVLTRAGDFQKDDEGNLVNSAGFQL 124 Query: 123 VL---DMASVPIQIPQKDE--IFNVGEKG 146 + D S + + D NV + G Sbjct: 125 MGYSYDSGSPAVVVNGFDGLVPVNVNQDG 153 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 12/126 (9%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRE 173 + Q + + G + K K + + L +V G V Sbjct: 306 GTGTPNGQAATPVKDVTIDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSA 365 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + P + G T+K G LE SN + E+ +MI + + + + + Sbjct: 366 NGQSGVTVTGFPQTNGLG-TIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDI 424 Query: 234 MLEAIR 239 M + Sbjct: 425 MDVLVN 430 >gi|50403744|sp|P50611|FLGE_HELMU RecName: Full=Flagellar hook protein flgE Length = 454 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + L ++N++N +T GF+ + F +++ Sbjct: 1 MLRSLWSGVSGMQAHQVALDVESNNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND+ + V GS +T + D A+EGD +F + RG TRDG Sbjct: 61 GGQNDVSVGLG-VNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDG 119 Query: 105 RFKVTDDGSLVSASGKYPVLD 125 F +G+LV+ +G Y V Sbjct: 120 EFLFDANGNLVT-NGGYVVQG 139 >gi|318604252|emb|CBY25750.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica Y11] Length = 397 Score = 123 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 10/145 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A+ ++L+T+++N++N+ T GF++ + +F+ + Q + SG Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSGTKGFKSGRTEFASMYAQ-----SQPLGVGVSGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 K+ GS TG +D A+ G+ +F +++ G TR G F +G LV+ASG Sbjct: 57 SQSIKKDGSIDRTGNAMDLAISGNGFFVVKNSSGDEAYTRAGMFTTDKNGVLVNASGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YP +V I +I VG Sbjct: 117 QGYPADAAGNVQTGIVSDLKISTVG 141 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 10/104 (9%) Query: 141 NVGEKGEISQ---KGKVI--ATMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSGV-- 192 + G + GK + + L + G + + + PL G Sbjct: 287 RIENDGSVYATFSNGKQMLQGKLVLANFANPNGLATQNGTTWSVTSRSGAPLLGSPGTGL 346 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + G LE SN + E+ ++ + + + T +I N+ M Sbjct: 347 LGNIVAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMM 390 >gi|238927475|ref|ZP_04659235.1| flagellar hook protein FlgE [Selenomonas flueggei ATCC 43531] gi|238884757|gb|EEQ48395.1| flagellar hook protein FlgE [Selenomonas flueggei ATCC 43531] Length = 680 Score = 123 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 28/208 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ + R+ V +N++N +T GF+ +V F++++ + + Sbjct: 1 MIRSMFSAVSGLKGHQTRMDVVGNNIANVNTTGFKASRVTFADMISQNLSGASAPNGTIG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFK 107 L GS TG D A+ GD F + + TR+G F Sbjct: 61 GVNPKQIGLGMSVASTDLLYTNGSVQQTGKNTDIAISRGDGLFVVSKGQQKFYTRNGAFS 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 +G+L S V + G IS G + + + + Sbjct: 121 FDAEGNLTIPSTGLYVQGY---------------MANNGVISVAGDNTTNIRIPAGKSME 165 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVK 195 S TP +++ V V+ Sbjct: 166 AQTTATASYTKNLNATTPGYEVANVLVR 193 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 9/110 (8%) Query: 139 IFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP----LEDL 189 ++ G I+ + A + + + G + + + Sbjct: 568 SVDIDSTGVITGTYTNGVRQKEAQIAMAQFNNPSGLTKMGGNLYQESNNSGTRTISGASD 627 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE SN + + MI + F S + +I +++ + I Sbjct: 628 IGTELTTSALEMSNVDLADQFSDMIITQRGFQSNSKMITVSDEMLETLIN 677 >gi|209547946|ref|YP_002279863.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533702|gb|ACI53637.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 433 Score = 123 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 7/149 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTVADN++N +T G++ + FS +V + + V S Sbjct: 6 SMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLP-SSGGNYNSGGVQSSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F ++ G +LTR G F D+G+LV+A+G Sbjct: 65 RQAVSDQGDISYTTSGTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAAGFQL 124 Query: 123 VL---DMASVPIQIPQKDE--IFNVGEKG 146 + D S + + D NV + G Sbjct: 125 MGYSYDSGSPAVVVNGFDGLVPVNVSQDG 153 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 12/126 (9%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRE 173 + Q + + G + K K + + L +V G V Sbjct: 306 GTGTPNGQAATPVKDVTIDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSA 365 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + P + G T+K G LE SN + E+ +MI + + + + + Sbjct: 366 NGQSGVTVTGFPQTNGLG-TIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDI 424 Query: 234 MLEAIR 239 M + Sbjct: 425 MDVLVN 430 >gi|94500241|ref|ZP_01306774.1| Flagellar hook protein FlgE [Oceanobacter sp. RED65] gi|94427540|gb|EAT12517.1| Flagellar hook protein FlgE [Oceanobacter sp. RED65] Length = 1240 Score = 123 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 2/141 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--SFVAS 61 +FNIGL+ A L +N++N TVGF+ + +F++V K S V Sbjct: 2 AFNIGLSGIRAASTDLEVTGNNVANASTVGFKESRAEFADVYTTTILGTGSKPVGSGVLV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ T LD A++G+ +F L TR G F + DG +V+ SG Sbjct: 62 DNVRQEFSQGNISGTENALDMAIDGNGFFILNDNGTESYTRAGIFGLDKDGFVVANSGAR 121 Query: 122 PVLDMASVPIQIPQKDEIFNV 142 A+ + + Sbjct: 122 LQGYEANGDGVVNGVLGDVQI 142 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 + G I + +V+ + L S +G + ++ +P Sbjct: 1130 LEIDADGFIFARFTNGQAEVLGQVALASFKNPEGLIPLGDTAWGESFESGTPTVGSPRTG 1189 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ LEDSN + E+ +I + F + I+ ++ I+ Sbjct: 1190 TFG-NLRSSALEDSNVDLSEELVGLIIAQRNFQASAKTIETSDTVTQTIIQ 1239 >gi|298487857|ref|ZP_07005897.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157582|gb|EFH98662.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 441 Score = 123 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V++ G Sbjct: 62 TAAVSQQFSQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSGG 121 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 +V G + K +VI L + QG + + + TP Sbjct: 328 SAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGTPQ 387 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGYITGQ-ALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|1196326|gb|AAB51418.1| flagellar hook protein [Borrelia burgdorferi] Length = 372 Score = 123 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 >gi|71736953|ref|YP_275563.1| flagellar hook protein FlgE [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484949|ref|ZP_05638990.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71557506|gb|AAZ36717.1| flagellar hook protein FlgE [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325093|gb|EFW81162.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. B076] gi|320329352|gb|EFW85345.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] gi|331011042|gb|EGH91098.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 441 Score = 123 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V++ G Sbjct: 62 TAAVSQQFSQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSGG 121 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 +V G + K +VI L + QG + + + TP Sbjct: 328 SAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGTPQ 387 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGYITGQ-ALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|203284204|ref|YP_002221944.1| flagellar hook protein [Borrelia duttonii Ly] gi|201083647|gb|ACH93238.1| flagellar hook protein [Borrelia duttonii Ly] Length = 441 Score = 123 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ V +N+SN +TVGF+ +V F +++ + + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNISNVNTVGFKKGRVNFQDMISQSISGASRPTDGRG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 GSF ST D + G+ +F L TR G F V Sbjct: 61 GVNPKQIGLGMTVAAVDTIHTQGSFQSTQKASDLGISGNGFFILRDGDNSFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 + LV+ + + Sbjct: 121 DSNRHLVNPANGMRIQG 137 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 E + + + G I+ G + I + L S G + ++ + Sbjct: 327 ENYEIDQNGVITGVYSNGIRRTIGKIALASFVNPGGLAKAGDTNFTETSNSGQARIGETG 386 Query: 193 -----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ G LE SN + + MI + F + I +++ + E +R Sbjct: 387 FAGLGTIRSGVLEMSNVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 438 >gi|289627763|ref|ZP_06460717.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651647|ref|ZP_06482990.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 2250] gi|330866422|gb|EGH01131.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 441 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V++ G Sbjct: 62 TAAVSQQFTQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSGG 121 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 +V G + K +VI L + QG + + + TP Sbjct: 328 SAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGTPQ 387 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGYITGQ-ALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|289548122|ref|YP_003473110.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] gi|289181739|gb|ADC88983.1| fagellar hook-basal body protein [Thermocrinis albus DSM 14484] Length = 454 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 33/201 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M SF + A + +DN++N +T+GF+ + F +V+ ++ ++ Sbjct: 1 MLRSFFNAVTGLNAYRTWMDITSDNLANVNTIGFKASRPIFQDVISSVTVGLNTVTNTIK 60 Query: 56 ----ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVT 109 + V +G+F TG D A++G F L+ P TRDG F+++ Sbjct: 61 TTTYGAGVLIDSTQKIWTIGNFKQTGINTDLAIQGRGLFILKDPISGAHYYTRDGEFRLS 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ-- 167 DG +V+++G K + F V E G G + + + + Sbjct: 121 RDGFMVNSAGL---------------KLQGFRVDENGR--TVGTGLEDIKVVPQLEPKPT 163 Query: 168 ---GFVRRENSGISPNIPPTP 185 F++ N + PP P Sbjct: 164 GVINFLQPSNLNATATEPPNP 184 Score = 80.1 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 +++ + E G + GK + + + + +++ + + PT + Sbjct: 345 DVYVLSEDGAVVGVYSNGKSLPLYRVAVAVFSDPEELIKKGANLYTSISTPTVMVPGGAE 404 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V+ G LE SN + E +I + + + I + E + Sbjct: 405 KVRSGMLEMSNVDIATEFVNLISAQRAYQANAKTITATNAVLDETVN 451 >gi|328545491|ref|YP_004305600.1| flagellar basal body FlaE [polymorphum gilvum SL003B-26A1] gi|326415232|gb|ADZ72295.1| Flagellar basal body FlaE [Polymorphum gilvum SL003B-26A1] Length = 424 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 22/184 (11%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A +L TVADN++N+ T G++ +FS ++ + V + Y Sbjct: 9 TGVSGMNAQSSKLGTVADNIANSSTTGYKRAASEFSSMILSQGTGTYNS-GGVKAHTVYA 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G+ T + LD A++G+ +F + G LTR G F V G LV+ +G Y Sbjct: 68 ISQQGAISYTTSGLDLAIDGNGFFVVADREGSTALTRAGSFVVDSKGYLVNTAGYYL--- 124 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR---RENSGISPNIP 182 PI G G ++ + GL +V++SQ + +++ + N+P Sbjct: 125 -QGYPI-----------GNGGTVAPVANGLG--GLENVNVSQSKLEAVPTDSALLWANVP 170 Query: 183 PTPL 186 Sbjct: 171 EDAA 174 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 33/207 (15%) Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD--FALEGDAWFALESPRGIILTRD 103 A +A+ + G+ + + D A+ + F L+ L + Sbjct: 235 AAPGGGFPYGAPALATQTITFDRTTGNLAA-ASPTDITVAVPNGSTFDLDMSGMTYL--N 291 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKG--KVIATM 158 F +T+ V A+G P E + G + G + + + Sbjct: 292 ADFTITE----VDANGN------------APSAVESVEFADDGTLFAVYANGDRRALYRI 335 Query: 159 GLYSVDMSQ------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 L V G + ++ P E G ++ G LE SN + E+ Sbjct: 336 PLADVPSPDKLTPLSGNIYTVSNNSGEVRVGFPGEGGLG-SLTVGALESSNVDLASELTS 394 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 MI + + + + + + E + Sbjct: 395 MIESQRGYTANSKVFKAGSDLLEELVN 421 >gi|332703535|ref|ZP_08423623.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] gi|332553684|gb|EGJ50728.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] Length = 556 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 8/168 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVA 60 S G+ A ++ + +N++N T+GF+ ++ F +V+ I Q V+ Sbjct: 6 SMFSGVTGLKAHGDKMGVIGNNIANVSTIGFKGARMFFQDVISQDIPTAAGIGQVGRGVS 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSAS 118 G Y G F +TG D A+ G +F + ++ TR G F+ DG LV + Sbjct: 66 IGAIYADYTQGGFETTGEATDLAIGGKGFFIVKKKNEDTSYYTRAGNFRFDKDGYLVDPN 125 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G VL P + G + L + Sbjct: 126 GL--VLQGWRAERSDPTAAVSGVTTNTNTVRIVGTPTD-IRLNNFQSP 170 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP-----PTPLEDL 189 V G +S G+++ + L + G R + Sbjct: 444 VAVDSDGILSGRYSNGQILELFAITLADFNNPWGLRREGGNLFMDTRDSGGAITNQANRG 503 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ +E SN + E QMI + F + +I + + E I Sbjct: 504 GKGSIASNSIEQSNVDMADEFVQMITTQRGFQANGKVITTVDTLLGEVIN 553 >gi|54307270|ref|YP_128290.1| flagellar hook protein FlgE [Photobacterium profundum SS9] gi|46911690|emb|CAG18488.1| Hypothetical flagellar hook protein FlgE [Photobacterium profundum SS9] Length = 472 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S NIG++ +A +++++++ N++N T G+++ + +F ++ + VA+ + Sbjct: 2 SMNIGMSGLIATSEQMNSISHNIANVGTAGYKSSRTEFQDIYAPEFGGGEMNGVEVAAIR 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + S + G+ TG D A+ G+ +F +E+ + TR+G F + DG+LV++ G + Sbjct: 62 Q--SFKNGTTTPTGRNGDLAINGEGFFMVENKGQQMFTRNGVFNLDKDGNLVASDGSH 117 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 7/95 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 KV + L +G + N+ + G V+ G E+SN + Sbjct: 379 KVQGQVSLARFPNQEGLQQAGNTRWTQSFSSGAALVGAAGTGQLG-NVRTGMYENSNVDL 437 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ + + I ++ +N+ Sbjct: 438 SSEMVNLMSAQSNYQANAKTIKVAQEMTQILFQNL 472 >gi|330967090|gb|EGH67350.1| flagellar hook protein FlgE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 441 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V+ Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVS 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V+++G Sbjct: 62 TAAVSQQFSQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGFVVNSAG 121 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 +V G + K +VI L + QG + + + TP Sbjct: 328 SAMSVDSTGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGTPQ 387 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGSITGQ-ALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|332525066|ref|ZP_08401246.1| flagellar basal body and hook protein [Rubrivivax benzoatilyticus JA2] gi|332108355|gb|EGJ09579.1| flagellar basal body and hook protein [Rubrivivax benzoatilyticus JA2] Length = 432 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 13/147 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--DIDQKISFVAS 61 SF GL+ A + L + +N++N +T G + + +FS++ N ++ V Sbjct: 2 SFQQGLSGLNATSKSLDVIGNNIANANTYGAKVSRAEFSDMYATALNGAGVNNVGIGVTL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVS---- 116 G G+ +TG +D A+ G +F + + TR+G+FKV +G +V+ Sbjct: 62 GAVSQQFTQGNISTTGNAMDMAINGAGFFQVTDGVSPTVYTRNGQFKVDREGYIVNNEKL 121 Query: 117 ------ASGKYPVLDMASVPIQIPQKD 137 A G + + P+++P Sbjct: 122 KLMGYPADGTGTIQPGLAQPLKLPTAG 148 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 + G + G+ + L + QG + + P Sbjct: 319 TSIAIEADGIVLARYSNGQSKPAGQLELANFRNPQGLQPLGGNVWASTYASGDAVVGVPS 378 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E GV ++ G LE+SN + E+ MI + + + I ++ M + Sbjct: 379 EGNMGV-IQAGALEESNIDLTGELVNMITAQRIYQANAQTIKTQDQVMQTLVN 430 >gi|332162901|ref|YP_004299478.1| Lateral flagellar hook protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667131|gb|ADZ43775.1| Lateral flagellar hook protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863351|emb|CBX73474.1| flagellar hook protein flgE [Yersinia enterocolitica W22703] Length = 397 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 10/145 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A+ ++L+T+++N++N+ T GF++ + +F+ + Q + SG Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSGTKGFKSGRTEFASMYAQ-----SQPLGVGVSGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 K+ GS TG +D A+ G+ +F +++ G TR G F +G LV+ASG Sbjct: 57 SQSIKKDGSIDRTGNAMDLAISGNGFFVVKNSSGDEAYTRAGMFTTDKNGVLVNASGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YP +V I +I VG Sbjct: 117 QGYPADAAGNVQTGIVSDLKISTVG 141 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 10/104 (9%) Query: 141 NVGEKGEISQ---KGKVI--ATMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSGV-- 192 + G + GK + + L + G + + + PL G Sbjct: 287 RIENDGSVYATFSNGKQMLQGKLVLANFANPNGLATQNGTTWSVTSRSGAPLLGSPGTGL 346 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 + G LE SN + E+ ++ + + + T +I N+ M Sbjct: 347 LGNIVAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMM 390 >gi|95928662|ref|ZP_01311409.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] gi|95135452|gb|EAT17104.1| protein of unknown function DUF1078-like [Desulfuromonas acetoxidans DSM 684] Length = 425 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 11/202 (5%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G++ + +S +N+SN++T+G+++ FS+++ A + ++ V G Sbjct: 5 STLYSGISGLQTNAEAMSVTGNNISNSNTIGYKSSSTVFSDMLSATISTTGTSVNQVGRG 64 Query: 63 KEYL----SKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVS 116 E + GSF ST ++ D A+EG +F L + ++ TR+G F G LV+ Sbjct: 65 SELTTVRSNFSQGSFQSTSSDTDLAVEGAGFFMLSAAGTDEVVYTRNGAFHFDPGGYLVN 124 Query: 117 ASGKYP---VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLY--SVDMSQGFVR 171 A G + D P D ++ + Q ++ T L + ++ GF Sbjct: 125 ADGYRVQGQLFDADGTPGGGDPVDIKVDLTSQVPALQTSNIVLTTNLNSGTEEIPGGFDL 184 Query: 172 RENSGISPNIPPTPLEDLSGVT 193 + S S TP+ D G T Sbjct: 185 SDPSESSNYSTSTPIYDALGET 206 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%) Query: 141 NVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT- 193 ++ G +S + + IAT+ L + G V+ NS S + P G + Sbjct: 315 SINSDGVVSVSYSNGETRDIATLTLATFTNPGGLVKEGNSLYSASRYSGNPQIGTPGASQ 374 Query: 194 --VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E MI + +++ + +I ++ + E I Sbjct: 375 GIIYTNSLELSNVDLSQEFVDMITIQNGYSANSKVITTTDEMLQEVIN 422 >gi|293115683|ref|ZP_05792615.2| flagellar hook protein FlgE [Butyrivibrio crossotus DSM 2876] gi|292808788|gb|EFF67993.1| flagellar hook protein FlgE [Butyrivibrio crossotus DSM 2876] Length = 440 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 16/140 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G+A + ++ + +N++N +TVGF++ V FS+V + + Sbjct: 1 MMRALYSGVAGLKTHQTKMDVIGNNIANVNTVGFKSQSVTFSDVFYQTTQNASGANAETG 60 Query: 61 SGKEYLSK---------------EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 G + E G ST D + GD+ F + + T+ G Sbjct: 61 MGGTNAKQIGLGSTVSSITTKVSESGGSQSTSNPFDLMINGDSMFIVNNAGTNYFTKAGN 120 Query: 106 FKVTDDGSLVSASGKYPVLD 125 F V G+LV++ G Y V Sbjct: 121 FTVDSAGTLVTSQG-YAVQG 139 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 11/111 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---- 190 ++ + G I K+IA + + + G + ++ + + + + Sbjct: 327 VSIQKDGIIVAYYDNGDSKIIAQIAVANFKNLSGLEKVGDNLFAETLNSGNFDGIGDDIT 386 Query: 191 --GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G G LE SN + E MI + + + + +I ++ + E I Sbjct: 387 EDGGYFSPGVLEMSNVDLAAEFTDMITTQRGYQANSRIITVSDTLLEELIN 437 >gi|285018209|ref|YP_003375920.1| flagellar hook protein flge [Xanthomonas albilineans GPE PC73] gi|283473427|emb|CBA15932.1| probable flagellar hook protein flge [Xanthomonas albilineans] Length = 407 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 FN L+ A L+ A+N++N +T GF++ + +F++ + + S V Sbjct: 2 GFNTSLSGIKAANTDLNVTANNIANVNTTGFKSSRAEFADQFTVSGYGLARNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ TG LD A+ G +F L + + +R G F+ +G +V+ G Sbjct: 62 SNVAQQFSQGNIDPTGRNLDLAISGSGFFTLSNNGARVYSRAGNFQTDANGYVVNPQG 119 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 ++ G I + K + + + + QG ++ + + P ++G Sbjct: 294 NSISIDSSGVIFARYSNNADKALGQVAMSNFVNPQGLTSLGDNAWAESSGSGAPRTGVAG 353 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V+ G LE S + ++ MI + F + + +I ++ I Sbjct: 354 SSDFGSVQSGALESSTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTVIN 405 >gi|7514872|pir||S61455 flagellar hook protein flgE - Helicobacter mustelae (fragment) Length = 454 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + L ++N++N +T GF+ + F +++ Sbjct: 1 MLRSLWSGVSGMQAHQVALDVESNNIANVNTTGFKYSRATFVDMISQTKLIATSPHKGGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND+ + V GS +T + D A+EGD +F + RG TRDG Sbjct: 61 GGQNDVSVGLG-VNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDG 119 Query: 105 RFKVTDDGSLVSASGKYPVLD 125 F +G+LV+ +G Y V Sbjct: 120 EFLFDANGNLVT-NGGYVVQG 139 >gi|320354325|ref|YP_004195664.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122827|gb|ADW18373.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 434 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKIS 57 +Q++ G++ Q +S + +N++NT+T+GF+ + FS+++ + Q Sbjct: 3 IQSALYSGVSGLNTNSQAMSVIGNNLANTNTLGFKGSRSIFSDLLSSNVFGSGGTSQVGR 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLV 115 V G+F +T ++ D A+EG +F L+ +R G F+ D+G LV Sbjct: 63 GVGLSIVDSIYSQGTFETTSSDTDVAIEGVGFFVLKEAGNDTAYYSRAGAFRFDDEGYLV 122 Query: 116 SASGKYP---VLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 + G + D + +P V G I Sbjct: 123 NPEGFRVQGKLFDPTNNSTLLPMDPTDIQVANVGLIEANPT 163 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSG 191 ++ +G + G+ I + L G + N I+P T L G Sbjct: 321 TNVSINSEGVVVASYSNGRQINISQLVLAKFQNPGGLKLAGANRYIAPAEAGTIRVGLPG 380 Query: 192 V---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E +MI + F + + +I ++ + E I Sbjct: 381 PELGKLFTNSLEQSNVDMGQEFVKMITTQRGFQANSKIITTVDEMLSELIN 431 >gi|330889085|gb|EGH21746.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 441 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ + S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGQTNVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + T LD A+ G+ +F L + + TR G F +G +V++ G Sbjct: 62 TAAVSQQFTQGNLTTGTANSLDLAINGNGFFMLSNNGEKLYTRAGAFHTDKEGYVVNSGG 121 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 +V G + K +VI L + QG + + + TP Sbjct: 328 SAMSVDATGNLFATYTNGKSQVIGQTSLTNFANVQGLAQAGGTNWRETFASGVPVSGTPQ 387 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE+SN + E+ +I + + I M I+ Sbjct: 388 SGTLGYITGQ-ALEESNVDLTMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 439 >gi|257095359|ref|YP_003169000.1| hypothetical protein CAP2UW1_3821 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047883|gb|ACV37071.1| protein of unknown function DUF1078 domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 417 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A L+ + +N++N TVGF+ F++V + + + G Sbjct: 2 SFQQGLSGLSAAATALNVIGNNVANASTVGFKGANAHFADVFASSLGIVGASQVGIGVGV 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 + ++ G+ +T LD AL G +F + I TR+G+F + +G +++ Sbjct: 62 SSIQQQFTQGNLTTTNNGLDLALNGGGFFRMSDDGAITYTRNGQFHIDKEGYVIN 116 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 142 VGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRREN------SGISPNIPPTPLEDLS 190 VG G I G+ + + L + G N S P + P Sbjct: 308 VGSDGIIQGRYSNGQTRNLGQVVLATFADPNGLKNLGNNQWSSSSASGPELVAAPGSGSR 367 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV ++ +EDSN + E+ MI + + + I ++ + + Sbjct: 368 GV-IQSSAIEDSNVDLTKELVDMITAQRNYQANAQTIKTQDQVLQTLVN 415 >gi|163750570|ref|ZP_02157808.1| flagellar hook protein [Shewanella benthica KT99] gi|161329725|gb|EDQ00714.1| flagellar hook protein [Shewanella benthica KT99] Length = 455 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 18/166 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNI L+ A ++ L+T A+N++N +++GF+ + +F++V N V + Sbjct: 2 SFNIALSGIAAAQKDLNTTANNIANVNSIGFKESRAEFADVYANSIFANGKTAVGGGVTT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVSAS 118 + GS T LD A+ G +F S + TR G FKV LV + Sbjct: 62 SQIAQQFHQGSLQFTNNALDLAINGGGFFVTSSELEAKDHSFTRAGAFKVNSADYLVDSQ 121 Query: 119 GKY----PVLDMASV---------PIQIPQKDEIFNVGEKGEISQK 151 G Y PV + P++IP E I Sbjct: 122 GNYLQTFPVDKDGNSTSVSLTTTKPVRIPDTAGSPQKTENIGIQMN 167 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENS---GISPNIPPTPLEDL 189 VG G I G +A + L QG + N+ + E Sbjct: 342 TNVEVGADGLINASYSNGTTVALARVALARFANEQGLTQVGNTSWKASQDSGQALAGEAN 401 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 SG +++ LE SN + ++ +I + F + + ++ N ++ + I I Sbjct: 402 SGTFGSIRSSALEQSNVDLTTQLVNLISAQRNFQASSRTLEVNN-TLQQTILQI 454 >gi|86154050|ref|ZP_01072251.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842464|gb|EAQ59678.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 545 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|15606898|ref|NP_214279.1| flagellar hook protein FlgE [Aquifex aeolicus VF5] gi|6225343|sp|O67711|FLGE_AQUAE RecName: Full=Flagellar hook protein flgE gi|2984140|gb|AAC07675.1| flagellar hook protein FlgE [Aquifex aeolicus VF5] Length = 482 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 16/201 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV- 59 M SF + L +DN++N +TVGF+ + F ++V + ++ V Sbjct: 1 MLRSFYNAITGMDVSRFALDVTSDNLANANTVGFKKSRPIFQDMVSQVVVGLNTTTGTVK 60 Query: 60 ----ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFKVT 109 +G S + +GSF T D A+EG A F L TRDGRF++ Sbjct: 61 TTTFGAGAVVDSTQKVWTIGSFKQTEITTDLAIEGKALFILRDVLTNQTYYTRDGRFRIN 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 +G L++ +G Y V P+ + E + + AT +Y + Sbjct: 121 REGYLINPNGLY-VQGFKVNPVT---GEVTGTQLEDIRVETQIPPKATGEIY-FNPPTNL 175 Query: 170 VRRENSGISPNIPPTPLEDLS 190 R P PL+ + Sbjct: 176 DERAPIIDQTTTPFNPLDSFT 196 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 5/87 (5%) Query: 143 GEKGEI---SQKGKVIAT--MGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 E G + G+ + T + L + V++ ++ + PT L ++ Sbjct: 394 SEDGVVVGVYSNGETLPTYRLALAQFTDPEELVKKGSNLYASVKTPTILLPGGSNKIRSA 453 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSIT 224 +E SN + E +I + + Sbjct: 454 VVEMSNVDIAKEFINLITAQRTYQVTQ 480 >gi|769850|gb|AAA91361.1| flagellar distal rod protein [Borrelia burgdorferi N40] Length = 372 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 >gi|121612241|ref|YP_999769.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157414368|ref|YP_001481624.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81116] gi|167004743|ref|ZP_02270501.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 81-176] gi|87249055|gb|EAQ72017.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157385332|gb|ABV51647.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 81116] gi|307747010|gb|ADN90280.1| Flagellar hook protein [Campylobacter jejuni subsp. jejuni M1] gi|315931630|gb|EFV10595.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni 327] Length = 545 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|86149558|ref|ZP_01067788.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839826|gb|EAQ57085.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni CF93-6] Length = 545 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|119947177|ref|YP_944857.1| flagellar hook protein FlgE [Psychromonas ingrahamii 37] gi|119865781|gb|ABM05258.1| flagellar hook protein FlgE [Psychromonas ingrahamii 37] Length = 398 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI ++ A ++L+T+++N++N T GF+ + +F+ + + Q SG Sbjct: 2 SFNIAISGLNATNKQLNTISNNIANVSTYGFKESRAEFASIY-----NGGQAGGVEVSGI 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFA-LESPRGIILTRDGRFKVTDDGSLVSASGK 120 GS +TG LD A+ G+ +FA +++ I TR G F D +VS++G Sbjct: 57 TQNFDRNGSLEATGRALDLAISGNGFFATVDNKGQQIYTRSGAFSTDKDNFIVSSAGN 114 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 10/103 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLSGVT 193 V + G I + ++ + L + N S + TP++ G Sbjct: 287 IRVEDNGMIFAQFTNGQSQLQGQLVLADFPNPTALEQSNNTSWMQTFGSGTPVKGAPGSG 346 Query: 194 VK----RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 V LE SN + E+ ++ + + + T I ++ Sbjct: 347 VLGKLTSNMLETSNVDLTSELVSLMTAQRNYQANTKTISTADQ 389 >gi|78776232|ref|YP_392547.1| hypothetical protein Suden_0031 [Sulfurimonas denitrificans DSM 1251] gi|78496772|gb|ABB43312.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 430 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +F G+ + + + +ADN++NT T+GFR +FS + + + + Sbjct: 2 MIQAFYTGINGIKSHQTSIDVIADNLANTSTLGFRGYTAEFSSLFEKSLSTTADINAGIG 61 Query: 61 SGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 G ++ VG+ + D A+ GD WF ++ + TRDG F + LV+ Sbjct: 62 LGSRVNAITMNDSVGTLQLSERSTDMAIMGDGWFGIQGEGSPLYTRDGSFTFDRERDLVT 121 Query: 117 ASGKYPVLDMASVPIQ 132 A G Y VL I Sbjct: 122 ADGYY-VLGTMGKNIN 136 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 12/114 (10%) Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP--------T 184 I + +I G S I ++ +Y + R S S + Sbjct: 317 INKNAQIVATFSNGMQSA----IGSVAVYHFQNDKALERAGGSRFSESTNSGKPIFFKDA 372 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +++ G + LE SN + ++I + + +++ + I ++ + +A+ Sbjct: 373 NGKNIVGTDLSNFKLEGSNVRMEVALTEIIVMQRSYDANSKCITTADQMLQKAL 426 >gi|148926857|ref|ZP_01810535.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8486] gi|145844434|gb|EDK21542.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8486] Length = 545 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|312962588|ref|ZP_07777078.1| flagellar hook protein FlgE [Pseudomonas fluorescens WH6] gi|311283168|gb|EFQ61759.1| flagellar hook protein FlgE [Pseudomonas fluorescens WH6] Length = 437 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 17/182 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 SFNIGL+ A ++L +N++N T GF++ + +F+++ A K Q + V Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVNL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 G +G LD A++G +F + G + TR G F+ DG + + +G Sbjct: 62 AAVSQQFTQGDVNGSGGILDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGFITNNTGT 121 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 + A+ + G+I + G + L ++ S ++ + Sbjct: 122 SRLQGYAA--------------DDDGKIIKGGLTDLQLNLSNLPPKASTKVDSTSNLNSS 167 Query: 181 IP 182 P Sbjct: 168 EP 169 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 13/125 (10%) Query: 128 SVPIQIPQKDEIFN---VGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + PI + G + +Q+ K I + L S + QG ++ Sbjct: 311 NPPITDGYATGQITGLKIDGNGVMFATFSNQQSKAIGQISLASFNNEQGLQPAGSTTWRE 370 Query: 180 N-IPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 P D ++ LE+SN N E+ +I + + I M Sbjct: 371 TFASGQPGYDTPQSGTLGSIVANSLENSNVNLTNELVDLIKAQSNYQANAKTISTQSTIM 430 Query: 235 LEAIR 239 I+ Sbjct: 431 QTIIQ 435 >gi|57237057|ref|YP_178069.1| flagellar hook protein [Campylobacter jejuni RM1221] gi|88597731|ref|ZP_01100964.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 84-25] gi|205356434|ref|ZP_03223198.1| hypothetical protein Cj8421_0048 [Campylobacter jejuni subsp. jejuni CG8421] gi|218561735|ref|YP_002343514.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57165861|gb|AAW34640.1| flagellar hook protein [Campylobacter jejuni RM1221] gi|88190035|gb|EAQ94011.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359441|emb|CAL34223.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205345621|gb|EDZ32260.1| hypothetical protein Cj8421_0048 [Campylobacter jejuni subsp. jejuni CG8421] gi|315929148|gb|EFV08373.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni 305] Length = 545 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|84514833|ref|ZP_01002196.1| hypothetical protein SKA53_11453 [Loktanella vestfoldensis SKA53] gi|84510992|gb|EAQ07446.1| hypothetical protein SKA53_11453 [Loktanella vestfoldensis SKA53] Length = 1778 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVAS 61 SF L + +S ++N++N T GF+ + +F ++ ++N S Sbjct: 2 SFYTALTGLNGAQSDISATSNNIANVGTTGFKRSRAEFGDIFATSPLQNSSSSIGSGAIL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKVTDDGSLVSAS 118 G+ S+ LD A+ G +FAL ++ ++ TR+G F V ++ ++V +S Sbjct: 62 KGVKQQFTQGNIASSLNALDMAISGQGFFALKPSQTSTQVVYTRNGSFNVDNNRNVVDSS 121 Query: 119 GK----YPVLDMASV 129 G+ YPV + SV Sbjct: 122 GQFLLAYPVNEDGSV 136 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV- 192 ++ G + K + + + + + G + N+ P+ +G Sbjct: 1666 LSIDATGLLRANYTNGQNKPLGKIVMANFNNQNGLKQVGNATFVQTAESGDPIIGEAGTE 1725 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ G LE SN + E+ +I + F + + I+ + + I Sbjct: 1726 GFGSIQSGALERSNVDITEELVNLITAQRNFQAASKAIETSTQLTQTIIN 1775 >gi|66046707|ref|YP_236548.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae B728a] gi|63257414|gb|AAY38510.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] Length = 442 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVR 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS + T LD A+ GD +F + + + TR G F +G +V++S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +VI L S QG + + + P G + LE+SN + Sbjct: 349 QVIGQTSLTSFANVQGLAQAGGTNWRETFASGVPVSGAPQSGTLGYITGQ-ALEESNVDL 407 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 408 TMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 440 >gi|330972413|gb|EGH72479.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 442 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL+ A + L +N++N T GF++ + +F++ S V Sbjct: 2 SFNIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTSVGSGVT 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS + T LD A+ GD +F + + + TR G F +G +V++S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +VI L S QG + + + P G + LE+SN + Sbjct: 349 QVIGQTSLTSFANVQGLAQAGGTNWRETFASGVPVSGAPQSGTLGYITGQ-ALEESNVDL 407 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 408 TMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 440 >gi|315654586|ref|ZP_07907492.1| flagellar hook protein FlgE [Mobiluncus curtisii ATCC 51333] gi|315491050|gb|EFU80669.1| flagellar hook protein FlgE [Mobiluncus curtisii ATCC 51333] Length = 487 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 14/169 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---------KND 51 M S G++ + L ++N++N +T GF++ +F + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVRSGAAPRLNER 60 Query: 52 IDQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G + S G+ TG LD + GD ++ L G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGTSVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 V G LV+A G + M + I ++ + +GK Sbjct: 121 GVDAQGQLVAADGSFVQGWMGNEDGTINASGTPGHITLPLTKTVEGKPT 169 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNI---PPTPLEDLSG 191 ++V G I + + +A + + S G + +S P E +G Sbjct: 375 YSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAGSSYFVETGNSGQPQIGEAGTG 434 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +E SN + E +I + F + + +I +++ + E + Sbjct: 435 QRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRVITTSDEILQELVN 484 >gi|283955493|ref|ZP_06372988.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 1336] gi|283792954|gb|EFC31728.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 1336] Length = 545 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 11/218 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M SF G++ + A+N++N +T GF+ +F ++ + + Q Sbjct: 1 MMNSFYNGISGVKTNSFGIDIYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 S + E GS +++ +E D AL+G +F + G TR+G FK +G LV Sbjct: 61 YGSGSASSNVVFEQGSLVASDSEFDVALQGKGFFGVLGADGNAYYTRNGSFKRDANGYLV 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 + G + + M I D + G G+ G ++ + + S G + Sbjct: 121 DSYGNFVLGTMNPAFTGINYSDRVA--GLMGDYLNTGTLVNNGFTVNSNNSFGIGTTASQ 178 Query: 176 GISPNIPPTPLEDLSGVTVK-RGFLEDSNANSMYEMGQ 212 G L VK G L N N+ E+ + Sbjct: 179 GAIKVPVNMYLPPQVTQNVKWSGSL---NTNTTTEVVK 213 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 + +++ + G I K ++ + LY+ QG ++ + Sbjct: 429 KQYDISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSGDASFIMKN 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQIVNTAKFKGGFLEQSNVDLSVELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|86151187|ref|ZP_01069402.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841534|gb|EAQ58781.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 545 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 YGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|110632640|ref|YP_672848.1| flagellar hook protein FlgE [Mesorhizobium sp. BNC1] gi|110283624|gb|ABG61683.1| flagellar basal body FlaE [Chelativorans sp. BNC1] Length = 422 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 18/163 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 G++ A RLSTVADN++N+ T G++ +FS +V V S Sbjct: 7 MKTGVSGMNAQANRLSTVADNIANSSTNGYKRATTEFSTLVVP-GTQGSYNSGGVTSTVR 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPV 123 G T + D A+ G +F ++ G TR G F + DG LV++SG Y + Sbjct: 66 NAVSAQGVLQYTTSITDLAVNGSGFFIVQGSNGQPYLTRAGSFVLDGDGRLVNSSG-YQL 124 Query: 124 LD---------------MASVPIQIPQKDEIFNVGEKGEISQK 151 + PI I Q + + G S Sbjct: 125 MGYSYANGTPSATANGYAGLEPITIKQPELVATPSRNGVFSAN 167 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 35/116 (30%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P + + +G + + K + + L +V + + + Sbjct: 304 PTSIDSIEISAEGIVYAQYADGSFKPLYRIPLANVTSPDQLEVLSGNAFAETAASGAVRI 363 Query: 189 LSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + G LE SN + E+ MI + + + + + M + Sbjct: 364 GFAGSDGLGDIASGALESSNVDIAEELTSMIESQRSYTANSKVFQTGSDLMELLVN 419 >gi|291613038|ref|YP_003523195.1| fagellar hook-basal body protein [Sideroxydans lithotrophicus ES-1] gi|291583150|gb|ADE10808.1| fagellar hook-basal body protein [Sideroxydans lithotrophicus ES-1] Length = 405 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISFVAS 61 F GL+ A + L + +N++N TVGF+ + +F++V + + Q Sbjct: 2 GFQQGLSGLNAASKSLDVIGNNVANASTVGFKQSQAQFADVYASSMAGSSGGQAGIGTRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ +T LD A+ G +F +++ I +R+G+F++ +G +V++ G Sbjct: 62 ATVAQQFTQGNITTTNNSLDMAVSGSGFFRMDNNGSITFSRNGQFQLDKNGFIVNSQGY 120 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVT 193 F+ G G ++ + K +A + L + +QG N+ + + TPL G Sbjct: 294 FSTGSDGIVTGRYSNGQTKTLAQVVLANFSNAQGLQPLGNNQWVETSTSGTPLVGAPGSA 353 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ +EDSN + E+ MI + + + I ++ + + Sbjct: 354 SLGVLQTSAVEDSNVDLTAELVNMITAQRVYQANAQTIKTQDQVLQTIVN 403 >gi|165925081|ref|ZP_02220913.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. F1991016] gi|165939053|ref|ZP_02227605.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. IP275] gi|166008950|ref|ZP_02229848.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. E1979001] gi|167418761|ref|ZP_02310514.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466336|ref|ZP_02331040.1| flagellar basal body rod protein FlgF [Yersinia pestis FV-1] gi|229840624|ref|ZP_04460783.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842825|ref|ZP_04462977.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. India 195] gi|294502790|ref|YP_003566852.1| hypothetical protein YPZ3_0680 [Yersinia pestis Z176003] gi|165913009|gb|EDR31634.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. IP275] gi|165923281|gb|EDR40432.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. F1991016] gi|165992289|gb|EDR44590.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. E1979001] gi|166962755|gb|EDR58776.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229690092|gb|EEO82149.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. India 195] gi|229696990|gb|EEO87037.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. PEXU2] gi|262360822|gb|ACY57543.1| hypothetical protein YPD4_0634 [Yersinia pestis D106004] gi|262364767|gb|ACY61324.1| hypothetical protein YPD8_0634 [Yersinia pestis D182038] gi|294353249|gb|ADE63590.1| hypothetical protein YPZ3_0680 [Yersinia pestis Z176003] Length = 197 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 15/194 (7%) Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 V S + S TG +LD AL+ A+ S TR+G+ V+ Sbjct: 2 GGGYSSRVAVLSQNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVS 61 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--------VIATMGLY 161 +G+L + +G PVL PI +P ++ + G I+ + I + L Sbjct: 62 AEGAL-TING-LPVLGDGG-PIVLPPY-SALSIADDGTIAIIPQAGGIKTPEEIERIKLV 117 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 + +Q +R+ N G+ + P V V LE SN +++ EM I L+++F Sbjct: 118 DIPANQ--LRKNNRGLLVSNRG-PAARDETVQVVNKHLESSNVSAISEMIASISLSRQFE 174 Query: 222 SITTLIDENEKSML 235 + ++ E Sbjct: 175 AQIKMMKVAEDLAQ 188 >gi|187924404|ref|YP_001896046.1| flagellar basal body FlaE domain protein [Burkholderia phytofirmans PsJN] gi|187715598|gb|ACD16822.1| flagellar basal body FlaE domain protein [Burkholderia phytofirmans PsJN] Length = 410 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 9/185 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 S+ GL+ A L + +N++N +TVGF++ +F+++ + + Sbjct: 2 SYQTGLSGLSAASTDLDVIGNNIANANTVGFKSSTAQFADMYANAVMTAANNQVGIGTRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+F T LD A+ G+ +F L + ++ +R+G F + G + +A G Sbjct: 62 STAEQDFSNGTFSKTDRPLDIAINGNGFFQLSNNGALVYSRNGVFHLDKSGVIENAQG-L 120 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 P++ + P D N G G + + ++ + ++ +P Sbjct: 121 PLMGYS------PGPDGKMNTGSVGPLMVSSASLPPTATKTISAAFNLDSQDPVPTNPFN 174 Query: 182 PPTPL 186 P P Sbjct: 175 PSDPA 179 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 16/141 (11%) Query: 116 SASGKYPVLDMASVPIQIPQKDEI-----FNVGEKGEIS---QKGK--VIATMGLYSVDM 165 + +G V +P + F+VGE G ++ G V+ + L + Sbjct: 271 NLTGTTQYAGKNGVTALLPDGNSSGQLTGFSVGEDGTLTGSYSNGATLVLGQVALATFSN 330 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFL-----EDSNANSMYEMGQMIHLTQKF 220 G N+ + + S + G L EDSN + +++ +I + + Sbjct: 331 PNGLANMGNNLYAQTGDSGAAQVSSPGSTNHGVLLGGQTEDSNVDLTHQLVDLITAQRNY 390 Query: 221 NSITTLIDENEKSMLEAIRNI 241 + + I +++ +A+ N+ Sbjct: 391 QANSQTIKTQ-QTVDQALINL 410 >gi|224419257|ref|ZP_03657263.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] gi|253826972|ref|ZP_04869857.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|313142759|ref|ZP_07804952.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|253510378|gb|EES89037.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|313131790|gb|EFR49407.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] Length = 751 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 14/134 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ A + L ++N++N +T GF+ + FS +V K + Sbjct: 1 MLRSLWSGVSGMQAHQVALDVESNNIANVNTNGFKYSRADFSTMVSQTKRAATIPYAGYG 60 Query: 61 SGKEYL------------SKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 +Y GS +T + D ALEG+ F + + G + TRDG F Sbjct: 61 GVNDYSVGLGTGIETTTKIFSQGSLQNTDRKADLALEGNGMFVVSNNGGFTNMYTRDGAF 120 Query: 107 KVTDDGSLVSASGK 120 G+LV+ SG Sbjct: 121 SFDAVGNLVTTSGY 134 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISP-NIPPTPLEDLSG----VTVKRGFLEDSNANSMYE 209 +A + + S +G ++ + P +G +++ LE SN++ Sbjct: 659 LAQVAVASFANYEGLQESGSNLFAESPNSGGPTIGTAGSGGRASIQASKLEMSNSDLSRG 718 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + Q+I + + F + + I +++ + + Sbjct: 719 LTQLIVVQRGFQASSKSITTSDQILNTLL 747 >gi|86360902|ref|YP_472789.1| flagellar hook protein FlgE [Rhizobium etli CFN 42] gi|86285004|gb|ABC94062.1| flagellar hook protein [Rhizobium etli CFN 42] Length = 430 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 19/197 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +TVG++ + FS +V + + V + Sbjct: 6 SMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSG-NYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F +ES G +LTR G F V DG+LV+++G Y Sbjct: 65 RQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNSAG-YT 123 Query: 123 VLD---MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 ++ + VP + G G + +A GL ++ + + + + Sbjct: 124 LMGYSYDSGVP-------AVVVNGFDGLVPVN---VAQSGLSAIASTSAYFSGNLNSEAT 173 Query: 180 NIPPT---PLEDLSGVT 193 + T P + SGVT Sbjct: 174 VVTDTTTLPSANTSGVT 190 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 34/167 (20%) Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKD----------------------EIFNVG 143 DG L SA+ V + + I + D ++G Sbjct: 262 LSFDADGQLTSATDTDIVDPVTAKTITMDYSDFTQLASDFSATGSADGQAASAVSSVSIG 321 Query: 144 EKGEISQ-----KGKVIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGV 192 G +S K + + L +V V N + P + G Sbjct: 322 TDGVVSVSYANGTTKSLYQIPLATVASPDNLTLLSGNVYTANGMSGVTVTGFPQTNGLG- 380 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ G LE SN + E+ +MI + + + + + M + Sbjct: 381 SIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 427 >gi|51598543|ref|YP_072731.1| flagellar hook protein FlgE [Borrelia garinii PBi] gi|51573114|gb|AAU07139.1| flagellar hook protein [Borrelia garinii PBi] Length = 442 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|254508422|ref|ZP_05120542.1| flagellar hook protein [Vibrio parahaemolyticus 16] gi|219548632|gb|EED25637.1| flagellar hook protein [Vibrio parahaemolyticus 16] Length = 438 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YVALSGISAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTPGGGVQAQK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS + T +D + G +FA+ +P LTR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSVYTNNPMDLRISGTGFFAVAKDRLTPTTNELTRNGAFHLNKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +Y VL PI IP++ E+ Sbjct: 123 EYLLGYQVNGDTGDVLSYEPSPINIPKEFGKPKQTSNIEVGVN 165 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ I + + V QG ++ + E Sbjct: 325 TKVDFDENGSVLGTYSNGENITLGRVAMVRVANEQGLDKKGGTQWDSTQFSGDKIWGESN 384 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ ++ Sbjct: 385 KGSFGSINSGTLEQSNIDMTQELVDLITAQRNFQANSRSLEVHNQTQQNILQ 436 >gi|160880840|ref|YP_001559808.1| hypothetical protein Cphy_2708 [Clostridium phytofermentans ISDg] gi|160429506|gb|ABX43069.1| protein of unknown function DUF1078 domain protein [Clostridium phytofermentans ISDg] Length = 479 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 15/134 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + ++ + +N+SN +TVGF+ FS+++ Sbjct: 1 MMRSLYSGVSGLRVHQTKMDVIGNNISNVNTVGFKASSATFSDILYQTTKSASGPNPNTG 60 Query: 49 ---KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 N + + + + G T D +EGD +F + + G T+ G Sbjct: 61 TAGTNAMQIGLGANLASITASITKTGGSQRTDNPFDLMIEGDGFFVVNNGVGNFFTKAGS 120 Query: 106 FKVTDDGSLVSASG 119 F V G+L + +G Sbjct: 121 FNVDAAGTLCTPTG 134 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 11/116 (9%) Query: 135 QKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 ++ ++G I G K++ + + + G N+ S + Sbjct: 361 GNMSGISIDQQGMIFGTYDNGDRKLLGQVVVATFSNPAGLEAIGNNMFSATPNSGEFNGV 420 Query: 190 ------SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG G LE SN + + +MI + F + + +I ++ + E I Sbjct: 421 GEDITSSGGKFITGVLEMSNVDLSQQFTEMITTQRGFQANSRIITTSDTLLEELIN 476 >gi|323498420|ref|ZP_08103416.1| flagellar hook protein FlgE [Vibrio sinaloensis DSM 21326] gi|323316493|gb|EGA69508.1| flagellar hook protein FlgE [Vibrio sinaloensis DSM 21326] Length = 438 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N V + K Sbjct: 3 YVALSGISAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTNAKTTPGGGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS + T +D + G +FA+ +P LTR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSVYTNNPMDLRISGTGFFAVAKDRLTPTTNELTRNGAFHLNKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 ++ VL PI IP++ E+ + L+ Sbjct: 123 EFLLGYQVNGDTGDVLSYEPSPINIPKEFGKPKQTSNIEVGVNLPAGGELKDPALFDYSD 182 Query: 166 SQGFVRRENS 175 + + R +S Sbjct: 183 PETYNRSTSS 192 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ I + + V QG ++ + E Sbjct: 325 TKVDFDENGSVLGTYSNGENITLGRVAMVRVANEQGLDKKGGTQWDSTQFSGDKIWGESN 384 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ ++ Sbjct: 385 KGSFGSINSGTLEQSNIDMTQELVDLITAQRNFQANSRSLEVHNQTQQNILQ 436 >gi|312147981|gb|ADQ30640.1| flagellar hook protein FlgE [Borrelia burgdorferi JD1] Length = 442 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFINPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|88811801|ref|ZP_01127055.1| flagellar hook protein [Nitrococcus mobilis Nb-231] gi|88791192|gb|EAR22305.1| flagellar hook protein [Nitrococcus mobilis Nb-231] Length = 400 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 16/189 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SF L A L +N++N+ T GF++ + +F+++ VG + I Q + Sbjct: 2 SFETALTGLNAASADLDVTGNNVANSATTGFKSSRAEFADIYALSNVGTAQTSIGQGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A +++ G F TG LD A+ G +FAL + +R+G F++ DG +V A Sbjct: 62 AAVTQQFT---QGQFDFTGNTLDLAVNGTGFFALNANGTTAYSRNGAFQLDRDGFIVDAD 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G A I G G++ +A ++ +S R + + Sbjct: 119 GHRLNGYQAGSNGAIS--------GALGDLQVNIGNVAPQATANIGLSANLDARAATIPT 170 Query: 179 PNIPPTPLE 187 P Sbjct: 171 AFDAADPAT 179 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVRREN----SGISPNIPPTPLEDLSGV-TVKRGFLEDSNANSM 207 + + + L Q + + + P T SGV T++ G LE SN N Sbjct: 307 QTLGQIALSRFPSPQSLQQIGDTHWAETFASGAPVTAAPGSSGVGTIQGGALEKSNVNLT 366 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ MI + F + + +I ++ + Sbjct: 367 EQLVHMITAQRNFQANSQMISTQDQITQSILN 398 >gi|224533123|ref|ZP_03673723.1| flagellar hook protein FlgE [Borrelia burgdorferi WI91-23] gi|224511850|gb|EEF82251.1| flagellar hook protein FlgE [Borrelia burgdorferi WI91-23] gi|312149691|gb|ADQ29762.1| flagellar hook protein FlgE [Borrelia burgdorferi N40] Length = 442 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|219670134|ref|YP_002460569.1| hypothetical protein Dhaf_4124 [Desulfitobacterium hafniense DCB-2] gi|219540394|gb|ACL22133.1| protein of unknown function DUF1078 domain protein [Desulfitobacterium hafniense DCB-2] Length = 426 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 12/138 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ + ++ V +N++N +T GF+ +V FS ++ N Sbjct: 1 MLRSLYSAISGLKNHQIKMDVVGNNIANVNTTGFKRSRVTFSTMLSQTMKGAGSPSANQG 60 Query: 53 DQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + V G S + GS +TG D + G +F + I+ R G F Sbjct: 61 GTNPAQVGLGSMVSSIDQIMTTGSSQNTGKSTDAMINGRGFFVFRNAGQIVYGRAGAFSQ 120 Query: 109 TDDGSLVSASGKYPVLDM 126 +G L VL Sbjct: 121 DQNGYLTDPGTGAFVLGQ 138 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 + I I + G+ S + I + + + G N+ + + + Sbjct: 310 VTIDGNGIISGIYSNGKGSAS-RRIGQLAIANFANDAGLQNVGNNFYAATNNSGIADIGA 368 Query: 191 GVT-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T + +E SN + E MI + F + + +I ++ + E I Sbjct: 369 AGTAGRGNIIPNSVEMSNVDLSQEFTDMIVTQRGFQANSRVITVSDSLLQELI 421 >gi|111115108|ref|YP_709726.1| flagellar hook protein FlgE [Borrelia afzelii PKo] gi|216263795|ref|ZP_03435789.1| flagellar hook protein FlgE [Borrelia afzelii ACA-1] gi|110890382|gb|ABH01550.1| flagellar hook protein [Borrelia afzelii PKo] gi|215979839|gb|EEC20661.1| flagellar hook protein FlgE [Borrelia afzelii ACA-1] Length = 442 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDVRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G G+F ST D + G+ +F L+ + TR G F V Sbjct: 61 GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGGNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ Sbjct: 328 ENYEIDQNGIIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQARIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|225552055|ref|ZP_03772995.1| flagellar hook protein FlgE [Borrelia sp. SV1] gi|225371053|gb|EEH00483.1| flagellar hook protein FlgE [Borrelia sp. SV1] Length = 442 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 68.1 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRELGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|195941363|ref|ZP_03086745.1| flagellar hook protein FlgE [Borrelia burgdorferi 80a] gi|221217779|ref|ZP_03589247.1| flagellar hook protein FlgE [Borrelia burgdorferi 72a] gi|224533707|ref|ZP_03674295.1| flagellar hook protein FlgE [Borrelia burgdorferi CA-11.2a] gi|225549062|ref|ZP_03770037.1| flagellar hook protein FlgE [Borrelia burgdorferi 94a] gi|225550122|ref|ZP_03771082.1| flagellar hook protein FlgE [Borrelia burgdorferi 118a] gi|226320584|ref|ZP_03796144.1| flagellar hook protein FlgE [Borrelia burgdorferi 29805] gi|221192456|gb|EEE18675.1| flagellar hook protein FlgE [Borrelia burgdorferi 72a] gi|224513000|gb|EEF83363.1| flagellar hook protein FlgE [Borrelia burgdorferi CA-11.2a] gi|225369234|gb|EEG98687.1| flagellar hook protein FlgE [Borrelia burgdorferi 118a] gi|225370288|gb|EEG99726.1| flagellar hook protein FlgE [Borrelia burgdorferi 94a] gi|226234003|gb|EEH32724.1| flagellar hook protein FlgE [Borrelia burgdorferi 29805] Length = 442 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|216264643|ref|ZP_03436635.1| flagellar hook protein FlgE [Borrelia burgdorferi 156a] gi|215981116|gb|EEC21923.1| flagellar hook protein FlgE [Borrelia burgdorferi 156a] Length = 442 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|218778868|ref|YP_002430186.1| hypothetical protein Dalk_1015 [Desulfatibacillum alkenivorans AK-01] gi|218760252|gb|ACL02718.1| Flagellar hook protein FlgE [Desulfatibacillum alkenivorans AK-01] Length = 693 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFV 59 ++ G++ L ++ + DN++N TVGF++ +V F +V+ ++ Q Sbjct: 5 SALFSGISGMNTLGNSMTVIGDNIANVSTVGFKSSRVTFQDVLAQTVSTQSGTGQLGRGA 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVS 116 A G GS ST + D A+ G+ +F + P TR G F+ +DG+ V+ Sbjct: 65 AMGDITGIFSQGSLESTDSATDLAIGGEGFFVVRDPENVNLEYFTRAGEFRFDEDGNFVN 124 Query: 117 ASGKYP 122 SG Sbjct: 125 PSGYLV 130 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENSGISPN------IPPTPLED 188 +V G I+ G++ + + L + QG + + + I P + Sbjct: 581 ISVSSDGVITGSYSNGQIKPLFRIALAKFNNVQGLQKMGQNMFAATRNSGDAITNKPGTN 640 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ LE SN + E +MI + + + + +I ++ + E I Sbjct: 641 GLG-TITSNSLEQSNVDLANEFVKMITTQRGYQANSKVITVTDQLLQEVIN 690 >gi|15596277|ref|NP_249771.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1] gi|107100525|ref|ZP_01364443.1| hypothetical protein PaerPA_01001550 [Pseudomonas aeruginosa PACS2] gi|218892956|ref|YP_002441825.1| flagellar hook protein FlgE [Pseudomonas aeruginosa LESB58] gi|254234216|ref|ZP_04927539.1| flagellar hook protein FlgE [Pseudomonas aeruginosa C3719] gi|254239438|ref|ZP_04932760.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 2192] gi|9946996|gb|AAG04469.1|AE004539_11 flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1] gi|126166147|gb|EAZ51658.1| flagellar hook protein FlgE [Pseudomonas aeruginosa C3719] gi|126192816|gb|EAZ56879.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 2192] gi|218773184|emb|CAW28996.1| flagellar hook protein FlgE [Pseudomonas aeruginosa LESB58] Length = 462 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNIGL+ A L+ +N++N TVGF+ + +F++V A + + + + S V Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+ ST + LD A+ G+ +F + I TR G F +V +G Y Sbjct: 62 SDVSQMFKQGNIDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNG-Y 120 Query: 122 PVLDMASVP 130 + A P Sbjct: 121 RLQGYAVGP 129 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGVT 193 + + G I G+ V + L + QG S + + P Sbjct: 351 LEIDDTGVIFARYTNGQSKVQGQVVLANFANIQGLTPIGKTSWVQSSESGEPAVGAPRSG 410 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ +I + + + I + I Sbjct: 411 TLGALQSGALEASNVDISNELVNLIVHQRNYQANAKTIQTEDAVTQTIIN 460 >gi|116049009|ref|YP_792189.1| flagellar hook protein FlgE [Pseudomonas aeruginosa UCBPP-PA14] gi|296390556|ref|ZP_06880031.1| flagellar hook protein FlgE [Pseudomonas aeruginosa PAb1] gi|313106035|ref|ZP_07792294.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 39016] gi|115584230|gb|ABJ10245.1| flagellar hook protein FlgE [Pseudomonas aeruginosa UCBPP-PA14] gi|310878796|gb|EFQ37390.1| flagellar hook protein FlgE [Pseudomonas aeruginosa 39016] Length = 462 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 SFNIGL+ A L+ +N++N TVGF+ + +F++V A + + + + S V Sbjct: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+ ST + LD A+ G+ +F + I TR G F +V +G Y Sbjct: 62 SDVSQMFKQGNIDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNG-Y 120 Query: 122 PVLDMASVP 130 + A P Sbjct: 121 RLQGYAVGP 129 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGVT 193 + + G I G+ V + L + QG S + P Sbjct: 351 LEIDDTGVIFARYTNGQSKVQGQVVLANFANIQGLTPIGKTSWVQSAESGEPAVGAPRSG 410 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ +I + + + I + I Sbjct: 411 TLGALQSGALEASNVDISNELVNLIVHQRNYQANAKTIQTEDAVTQTIIN 460 >gi|307699899|ref|ZP_07636950.1| putative flagellar hook protein FlgE [Mobiluncus mulieris FB024-16] gi|307614937|gb|EFN94155.1| putative flagellar hook protein FlgE [Mobiluncus mulieris FB024-16] Length = 512 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 14/136 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---------IKND 51 M S G++ + L ++N++N +T GF++ +F + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVKSGATARLNER 60 Query: 52 IDQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRF 106 + V G + S G+ +TG LD + GD +F L+ G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITNNFTGGAAQNTGRNLDTMINGDGFFVLKKTNGTQVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYP 122 + G +V+A G + Sbjct: 121 GLDAKGQVVAADGSFV 136 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGI---SPNIPPTPLEDLSG 191 F V G I + + + + G + S + P E SG Sbjct: 400 FGVEADGTIRGTFSNGMSRAMGKIATAAFSNPLGLEKAGASYFVESGNSGQPQIGEPGSG 459 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G +E SN + E +I + F + T +I +++ + E + Sbjct: 460 SRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANTRVITTSDEILQELV 508 >gi|194365680|ref|YP_002028290.1| flagellar hook protein FlgE [Stenotrophomonas maltophilia R551-3] gi|194348484|gb|ACF51607.1| flagellar basal body FlaE domain protein [Stenotrophomonas maltophilia R551-3] Length = 407 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 FN+ L+ A LS A+N++N +T GF+ + +F+++ A + + S V Sbjct: 2 GFNVSLSGINAANSDLSVTANNVANVNTTGFKESRAEFADLFSATGYGLSKNAVGSGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G TG LD A+ G+ +F + + +R G F+ G +++ G Sbjct: 62 SNVAQQFKQGHNEQTGRSLDMAISGEGFFTMNMNGTRVYSRAGNFQTDPSGYVINPQG 119 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG----ISPNIPPTPLEDLS 190 V E G + + K + + L + + QG + N+ S P T + D S Sbjct: 296 ITVSETGVVYARYSNGADKPLGQVALTTFNNPQGLESKGNNLWVDTFSSGTPRTGMPDTS 355 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ G LE S + ++ MI + F + +I ++ I Sbjct: 356 NLGKIQAGSLEASTVDLTEQLVNMITAQRNFQANAQMITTQDQITQTVIN 405 >gi|256829395|ref|YP_003158123.1| hypothetical protein Dbac_1614 [Desulfomicrobium baculatum DSM 4028] gi|256578571|gb|ACU89707.1| protein of unknown function DUF1078 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 513 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 7/126 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---DQKIS 57 + +S IG +A ++ ++ ++DN++N TVGF++ + F+ ++ +Q Sbjct: 3 ISSSLYIGTTGIMAQQKNMAVISDNIANVSTVGFKSSHMIFNTLMSQQMGSASVSNQVGQ 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSL 114 V +G+ T T D ++ G +F + SP G TR G F+ +G L Sbjct: 63 GVGVSSILYDMSLGALEPTNTATDISISGKGFFIV-SPNGSSDQHYTRAGNFRFDAEGYL 121 Query: 115 VSASGK 120 G Sbjct: 122 RDPQGN 127 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----- 187 + +V G + + + + + + + QG R + S + Sbjct: 399 QSVSVDTAGVLVGYFSNGQNQGLYKIPMADFINPQGLFREGGNLFSATKDSGAVSVGWAG 458 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +V LE+SN + E MI + F++ + +I ++ + AI+ Sbjct: 459 EGRLGSVITSSLENSNVDLATEFVNMIITQKGFDANSKVITTGDQVVQTAIQ 510 >gi|146277708|ref|YP_001167867.1| flagellar basal body FlaE domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555949|gb|ABP70562.1| flagellar basal body FlaE domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 423 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 S N L+ A + ++ + N++N T+GFR + +F++V + I + S V + Sbjct: 2 SINTALSGLSAAQHDIAATSHNIANVGTIGFRGSRAEFADVFNSSPYSIARTAVGSGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSL 114 + + GS ++TG LD A+EG +FA E G I TR G F + D G Sbjct: 62 LRTAMQFSQGSVVATGNTLDLAIEGQGFFATEPAVGPNSAKPEPIYTRAGAFGLNDKGVA 121 Query: 115 VSASGK----YPVLDMASVPIQIPQKDEIFNV 142 V+ASG+ +PV Q+P + Sbjct: 122 VNASGQKLLAWPVSVEGDALSQVPGTAVPLTI 153 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 34/177 (19%) Query: 97 GIILTRD-GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN--------VGEKG- 146 G LT G G+L +G P + V + G Sbjct: 244 GETLTPAEGDLAFDATGALAGGTGSLSFTTGIGTPYTLDLTGTALTNRSFEVNTVNQDGK 303 Query: 147 --------EISQKGKV-----------IATMGLYSVDMSQGFVRRENSGISPNIP-PTPL 186 E+ G V + + L + Q + SG + P+ Sbjct: 304 SAAALTSLEVDASGTVWAAYGAGDSVAMGQVVLVTFANPQALRQLGASGFAATADSGQPV 363 Query: 187 EDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + ++ G LE +N + E+ +I + + + ++ + M + Sbjct: 364 AGTAGDSGFGIIRAGALEHANVDLTEELVHLITAQRNYQASAKAMETSNSLMQTIMN 420 >gi|320529447|ref|ZP_08030535.1| putative flagellar hook protein FlgE [Selenomonas artemidis F0399] gi|320138413|gb|EFW30307.1| putative flagellar hook protein FlgE [Selenomonas artemidis F0399] Length = 681 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 28/208 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T GF+ +V F++++ + + Sbjct: 1 MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGASAPQGTIG 60 Query: 61 ------------SGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFK 107 L GS STG D A+ GD F + TR+G F+ Sbjct: 61 GVNPKQIGLGMSVASTDLLYTNGSVQSTGKNTDIAISRGDGLFVVSRGEQKYYTRNGAFE 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 G+L S V + G ++ G+ + + + + Sbjct: 121 FDAAGNLTIPSTGLYVQGY---------------MATDGRVTPAGENTTKINIPAGKSME 165 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVK 195 S T +++ V+ Sbjct: 166 AATTATASYTKNLNASTTGYEVANTLVR 193 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP----LED 188 + G I+ G + A + + + G + + + Sbjct: 568 SKVEIDSSGVITGVYTNGVRRTEAQIAMAQFNNPSGLTKMGGNLYQESNNSGTRTISGAA 627 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE SN + + MI + F S + +I +++ + I Sbjct: 628 DIGSELTTSALEMSNVDIADQFSDMIITQRGFQSNSKIITVSDEMLETLIN 678 >gi|15594628|ref|NP_212417.1| flagellar hook protein FlgE [Borrelia burgdorferi B31] gi|223889009|ref|ZP_03623600.1| flagellar hook protein FlgE [Borrelia burgdorferi 64b] gi|226321601|ref|ZP_03797127.1| flagellar hook protein FlgE [Borrelia burgdorferi Bol26] gi|2494528|sp|Q44767|FLGE_BORBU RecName: Full=Flagellar hook protein flgE gi|1165267|gb|AAA85606.1| FlgE [Borrelia burgdorferi] gi|2688183|gb|AAC66665.1| flagellar hook protein (flgE) [Borrelia burgdorferi B31] gi|223885825|gb|EEF56924.1| flagellar hook protein FlgE [Borrelia burgdorferi 64b] gi|226232790|gb|EEH31543.1| flagellar hook protein FlgE [Borrelia burgdorferi Bol26] Length = 442 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|224370779|ref|YP_002604943.1| FlgE [Desulfobacterium autotrophicum HRM2] gi|223693496|gb|ACN16779.1| FlgE [Desulfobacterium autotrophicum HRM2] Length = 901 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFV 59 +S G + + + V +N+SN +TVGF+ + F++ + A ++ DQ + Sbjct: 5 SSLFTGTSGLTNMGNAMQVVGNNISNVNTVGFKKGRSTFADTLSQSVATQSGTDQVGRGM 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSA 117 + G S + GSF STG D ++ GD +F + TR G F G LV+ Sbjct: 65 SIGAVDQSFDTGSFESTGNSTDLSIGGDGFFVVRQSNSENNFYTRAGNFHFDKSGQLVNP 124 Query: 118 SGKYPVLD 125 Y V Sbjct: 125 E-SYLVQG 131 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 23/165 (13%) Query: 90 FALESPRGIILTRDG-RF---KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 F++E G DG F ++ S++ Y D S + +V Sbjct: 743 FSIELDIGTRY--DGINFINDSLSSTQYARSSNTVYQDADGYSA-----GDLQGVDVASD 795 Query: 146 GE---ISQKGKVIA--TMGLYSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTV 194 G + G++I +GL + G + S I P E+ G T+ Sbjct: 796 GIMTGVYSNGQLIPLFRVGLAKFLNNNGLSNSGGNLFSETRDSGSAITNKPGENGLG-TI 854 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E +MI + F + + I ++ M I Sbjct: 855 SPNSLEMSNVDISEEFVKMITTQRGFQANSKTITTVDEMMQTVIN 899 >gi|309788147|ref|ZP_07682753.1| flagellar basal-body rod protein flgG [Shigella dysenteriae 1617] gi|308923999|gb|EFP69500.1| flagellar basal-body rod protein flgG [Shigella dysenteriae 1617] Length = 156 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 19/161 (11%) Query: 92 LESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 + P G TRDG F+V +G LV+A G I IP +G G +S Sbjct: 1 MMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQV-----QPAITIPANALSITIGRDGVVSV 55 Query: 151 KGK------VIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGF 198 + + + L + G + E TP + +G+ + +G+ Sbjct: 56 TQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGY 114 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN N E+ MI + + + + + ++ + + + Sbjct: 115 VETSNVNVAEELVNMIQVQRAYEINSKAMSTTDQMLQKLTQ 155 >gi|218249383|ref|YP_002374806.1| flagellar hook protein FlgE [Borrelia burgdorferi ZS7] gi|218164571|gb|ACK74632.1| flagellar hook protein FlgE [Borrelia burgdorferi ZS7] Length = 442 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|269792937|ref|YP_003317841.1| hypothetical protein Taci_1328 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100572|gb|ACZ19559.1| protein of unknown function DUF1078 domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 636 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 14/129 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-----GAIKNDIDQK 55 M S G++ + L V +N++N +T GF+ V F +++ GA+ D Q Sbjct: 1 MLRSLYSGVSGVKGHQTYLDVVGNNIANVNTTGFKRSNVLFQDLLYQNVRGAMAPDAGQG 60 Query: 56 ISFV---------ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + G G+ TG DF + GD +F +++ TR G Sbjct: 61 RGGINPMQVGLGSMVGAVETIHTQGTMQYTGNRNDFGISGDGYFVVKTGADTFYTRAGSA 120 Query: 107 KVTDDGSLV 115 + G+LV Sbjct: 121 TMDSGGNLV 129 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPT------PL 186 + + V G + G+ + + L QG + + S + P+ Sbjct: 522 QDYAVSSDGTVQGVYSNGQRQPLYKLALALFANPQGLFKESGTVFSQSANSGIAQIVKPM 581 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +G + LE SN + E +I + F + +I +++ + E I Sbjct: 582 EGGAG-RIMGSNLEMSNVDLSQEFVNLIVAQRGFQANARVITTSDQVLEELIN 633 >gi|254462557|ref|ZP_05075973.1| flagellar hook protein FlgE [Rhodobacterales bacterium HTCC2083] gi|206679146|gb|EDZ43633.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium HTCC2083] Length = 1399 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 86/212 (40%), Gaps = 20/212 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVAS 61 SF L + +ST ++N++N T GF+ + +F ++ ++N S Sbjct: 2 SFYTALTGLNDAQSDISTSSNNIANVGTTGFKRSRAEFGDIFATSPLQNSSSSIGSGAIL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIILTRDGRFKVTDDGSLVSAS 118 G+ S+ LD A+ G +FAL ++ ++ TR+G F V ++ ++V +S Sbjct: 62 KGVKQQFTQGNIASSLNALDMAISGQGFFALKPSQTSTQVVYTRNGSFNVDNNRNVVDSS 121 Query: 119 GK----YPVLDMASV---------PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 G+ YPV + SV P+++P ++S A + + Sbjct: 122 GQFLLTYPVNEDGSVTAKDIDSATPLRLPVTSGDPQATTNVDLSVNLPANAEVAMEKDKF 181 Query: 166 SQGFVRRENS--GISPNIPPTPLEDLSGVTVK 195 G+ + + + T +DL T+ Sbjct: 182 RDGYTFDPDDPESFTNSTSFTIFDDLGNPTIA 213 Score = 72.8 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV- 192 N+ G + K + + L + + G + N+ PL +G Sbjct: 1287 LNIDATGLLRANYTNGQNKPLGKIVLANFNNQNGLKQVGNATFVETATSGEPLIGEAGTE 1346 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ G LE SN + E+ +I + F + + I+ + + I Sbjct: 1347 GFGSIQSGALERSNVDITEELVNLITAQRNFQASSKAIETSTQLTQTIIN 1396 >gi|260886641|ref|ZP_05897904.1| flagellar hook protein FlgE [Selenomonas sputigena ATCC 35185] gi|330839527|ref|YP_004414107.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] gi|260863784|gb|EEX78284.1| flagellar hook protein FlgE [Selenomonas sputigena ATCC 35185] gi|329747291|gb|AEC00648.1| flagellar hook-basal body protein [Selenomonas sputigena ATCC 35185] Length = 496 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 27/180 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV- 59 M S G++ + + R+ + +N++N +T+GF++ +V F++ + ++ V Sbjct: 1 MMRSLFSGVSGLKSHQTRMDVIGNNIANVNTIGFKSSRVTFADTLYQTQSGAAAPTGTVG 60 Query: 60 ---------ASGKEYLSKEVG--SFISTGTELDFALEGDAWFALESPRG---IILTRDGR 105 G + + G S +TG D AL G+ F + G TR G Sbjct: 61 GTNPKQIGLGVGVASVDQLFGDASPQATGKNTDLALSGNGLFVVSRDAGGKDKYYTRAGN 120 Query: 106 FKVTDD-GSLVSASGKYPV---------LDMASVP--IQIPQKDEIFNVGEKGEISQKGK 153 F + +V SG + V +D P IQI IS KG Sbjct: 121 FSFDANYNYVVPGSGYHVVGWNADENGSIDTKGTPTGIQIKDAMRSMGAKATTTISYKGN 180 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 4/91 (4%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----DLSGVTVKRGFLEDSNANSMY 208 + +A + + D + G + + + + G+T+ LE SN + Sbjct: 403 RALAQVAVAQFDNAPGLTKAGANLYTESNNSGTANIKTVSALGLTLTPSALEMSNVDVAN 462 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E M+ + F S + +I ++ + I Sbjct: 463 EFADMVVTQRGFQSNSKVITVGDEMLETVIN 493 >gi|254698190|ref|ZP_05160018.1| flagellar hook protein FlgE [Brucella abortus bv. 2 str. 86/8/59] gi|260762637|ref|ZP_05874969.1| flagellar hook protein flgE [Brucella abortus bv. 2 str. 86/8/59] gi|260673058|gb|EEX59879.1| flagellar hook protein flgE [Brucella abortus bv. 2 str. 86/8/59] Length = 396 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D ++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLTIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGFELMDVLVN 393 >gi|224534234|ref|ZP_03674812.1| flagellar hook protein FlgE [Borrelia spielmanii A14S] gi|224514336|gb|EEF84652.1| flagellar hook protein FlgE [Borrelia spielmanii A14S] Length = 442 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDVRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ Sbjct: 328 ESYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQARIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|269866427|ref|XP_002652270.1| flagellar hook protein flgE [Enterocytozoon bieneusi H348] gi|220062840|gb|EED41785.1| flagellar hook protein flgE [Enterocytozoon bieneusi H348] Length = 140 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 3/127 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVAS 61 SFNIGL+ A ++L +N++N T GF++ + +F+++ A K Q + V Sbjct: 2 SFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVNL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 G ++G LD A++G +F + G + TR G F+ DG + + +G Sbjct: 62 AAVSQQFTQGDVNNSGGVLDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGYITNNTGT 121 Query: 121 YPVLDMA 127 + A Sbjct: 122 SRLQGYA 128 >gi|256830199|ref|YP_003158927.1| hypothetical protein Dbac_2432 [Desulfomicrobium baculatum DSM 4028] gi|256579375|gb|ACU90511.1| protein of unknown function DUF1078 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 562 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVA 60 S G + A + ++ + +N+SN T+GF+ ++ F + + + Q V+ Sbjct: 6 SLYSGTSGLKAHGEDMTVIGNNISNVSTIGFKGSRMYFEDALSQQITTASGSGQVGRGVS 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSLVSAS 118 G GS ST D A+ G+ +F + TR G F+ ++G LV Sbjct: 66 VGTVMGDFSQGSLESTTEATDLAIGGNGFFMVSPAGQEVNYYTRAGNFRFDEEGYLVDPR 125 Query: 119 GK 120 G Sbjct: 126 GY 127 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTP-----LE 187 + +V G I+ G+V+ + L + + + R + S P Sbjct: 448 QNISVDRDGVITGRYSNGQVLQLFAVTLATFNNNYALYREGGNLFSETRSSGPPITGLAN 507 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE SN + E +MI + F + + I ++ + I+ Sbjct: 508 TGGKGSIASNSLEQSNVDLATEFVKMITTEKGFQANSKTITTVDQMLTVLIQ 559 >gi|313895889|ref|ZP_07829443.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975314|gb|EFR40775.1| fagellar hook-basal body protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 274 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 13/138 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + + R+ + +N++N +T GF+ +V F +++ + + Sbjct: 1 MMRSMFSGVSGLKSHQTRMDVIGNNIANVNTTGFKAGRVTFEDMLSQTLSGAAAPGTTIG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFK 107 V+ G GS TG D AL G++ F ++ TR+G F+ Sbjct: 61 GTNPKQIGLGVSVGSIDTIFTDGSVQGTGKNTDLALSGGNSTFIVKRGEQTYYTRNGAFE 120 Query: 108 VTDDGSLVSASGKYPVLD 125 G+ V V Sbjct: 121 FDAKGNYVLPGSGLHVQG 138 >gi|313896037|ref|ZP_07829591.1| putative flagellar hook protein FlgE [Selenomonas sp. oral taxon 137 str. F0430] gi|312975462|gb|EFR40923.1| putative flagellar hook protein FlgE [Selenomonas sp. oral taxon 137 str. F0430] Length = 676 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 28/208 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV- 59 M S G++ + R+ + +N++N +T GF+ +V F++++ + + Sbjct: 1 MMRSMFSGVSGLKGHQTRMDVIGNNIANVNTTGFKASRVTFADMISQNLSGASAPQGTIG 60 Query: 60 -----------ASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRFK 107 A L GS STG D A+ GD F + TR+G F+ Sbjct: 61 GVNPKQIGLGMAVASTDLLYTNGSVQSTGKNTDIAISRGDGLFVVSRGNEKYYTRNGAFE 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 G+L S V + G IS G + + + + Sbjct: 121 FDAQGNLTIPSTGLYVQGY---------------MANNGVISNGGANTTNIQVPAGKSMK 165 Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVK 195 S TP +++ V+ Sbjct: 166 ATTTTTASFTKNLNATTPGYEVANTLVR 193 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP----LED 188 + G I+ + A + + + G + + + Sbjct: 563 SKVEIDSAGVITGTYTNGVRQKEAQIAMAQFNNPSGLTKMGGNLYQESNNSGTRTISGAA 622 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + LE SN + + MI + F S + +I +++ + I Sbjct: 623 DIGSELTTSALEMSNVDIADQFSDMIITQRGFQSNSKIITVSDEMLETLIN 673 >gi|219684598|ref|ZP_03539541.1| flagellar hook protein FlgE [Borrelia garinii PBr] gi|219671960|gb|EED29014.1| flagellar hook protein FlgE [Borrelia garinii PBr] Length = 442 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|261253614|ref|ZP_05946187.1| flagellar hook protein FlgE [Vibrio orientalis CIP 102891] gi|260937005|gb|EEX92994.1| flagellar hook protein FlgE [Vibrio orientalis CIP 102891] Length = 434 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V + V + K Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ +P LTR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRIGGTGFFAVAKDRLTPTSNELTRNGAFHLNKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 ++ VL PI IP++ E+ + L+ Sbjct: 123 EFLLGYQVNKDTGDVLSYEPSPINIPKEFGKPKQTANIEVGVNLPAGGELKDPALFDYSD 182 Query: 166 SQGFVRRENS 175 + + R +S Sbjct: 183 PETYNRSTSS 192 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ ++ + + V QG ++ + E Sbjct: 321 TKVDFDENGSVLGTYSNGENIILGRVAMVRVANEQGLDKKGGTQWDSTQFSGDKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ ++ Sbjct: 381 KGSFGSISSGTLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQTQQNILQ 432 >gi|226944492|ref|YP_002799565.1| flagellar basal body rod protein [Azotobacter vinelandii DJ] gi|226719419|gb|ACO78590.1| Flagellar basal body rod protein [Azotobacter vinelandii DJ] Length = 383 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ L+ A L+ V++N++N+ TVGF++ +F++V + + + +++ V Sbjct: 2 GFSQALSGLNAASSNLNVVSNNIANSQTVGFKSSTTQFADVYASSRVGLGVQVAGV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + G+ +T LD A+ G +F E ++ +R+G+ +T +G L +A G + Sbjct: 58 -VQNFTSGNLETTDRSLDLAISGSGFFRFEQAGQVVYSRNGQLTLTPEGYLQNAQGARLL 116 Query: 124 LDMASVPIQIPQKD 137 + IQIP Sbjct: 117 GSNGA--IQIPADG 128 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQKGK-----VIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSG-- 191 F + E G + V+ + L + +G ++ + PL +G Sbjct: 271 FTIEENGNVVGNYSNEQSLVVGQIQLATFRSPEGLQPVGDNAWVETAASGQPLVGTAGNG 330 Query: 192 --VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ G +E SN + E+ +I + F + + + + +A+ Sbjct: 331 QFGSLESGVVEASNVDLTKELVNLIIAQRNFQANAQSVSTQSEVLEQAVN 380 >gi|219685755|ref|ZP_03540566.1| flagellar hook protein FlgE [Borrelia garinii Far04] gi|219672694|gb|EED29722.1| flagellar hook protein FlgE [Borrelia garinii Far04] Length = 442 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDSRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVATIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGVYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|218886899|ref|YP_002436220.1| hypothetical protein DvMF_1808 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757853|gb|ACL08752.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 501 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 18/158 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKIS 57 M + G L Q + V++N++N +TVGF+ + F +++ N IS Sbjct: 1 MLRALYSGATGMKTLAQGMQAVSNNLANVNTVGFKQQQALFEDLMSQYAGTGNSASTSIS 60 Query: 58 FVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 V G GS+ S D ++ G +F + TR G F+ G+ Sbjct: 61 QVGLGSRLTDIRTVYGQGSYESGTDITDLSINGKGFFQVSLGGKTHYTRAGNFRFDKGGN 120 Query: 114 LVSASGKYPVLD---------MASVPIQIPQKDEIFNV 142 LV +G VL+ A+ PI +P + NV Sbjct: 121 LVDPNGF--VLNGRAITNGVEGATGPISLPPGADGRNV 156 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL----- 189 ++ G I+ + + + LY G R + S + ++ Sbjct: 388 IDISADGIITGRYSNGQNDDLYHITLYRFTSEDGLRREGMNHFSATLESGAAQEGLPDTQ 447 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + TV LE SN + E MI + F + + I + + +A+ Sbjct: 448 NYGTVAAKSLEQSNVSMEREFVNMIIYQRGFQTNSKSIMTADSMIQKAL 496 >gi|323495377|ref|ZP_08100454.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] gi|323310300|gb|EGA63487.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] Length = 434 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V + V + K Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ SP LTR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRLSPTTNELTRNGAFHLNKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 ++ VL PI IP++ E+ + L+ Sbjct: 123 EFLLGYQVNKDTGDVLSYEPSPINIPKEFGKPKQTANIEVGVNLPAGGELKDPALFDYTD 182 Query: 166 SQGFVRRENS 175 + + R +S Sbjct: 183 PETYNRSTSS 192 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ ++ + L V QG ++ + E Sbjct: 321 TKVDFDENGSVLGTYSNGENIILGRVSLVRVANEQGLDKKGGTQWDSTQFSGDKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ +I + F + + ++ + ++ ++ Sbjct: 381 KGSFGTISSGTLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQTQQNILQ 432 >gi|157364671|ref|YP_001471438.1| hypothetical protein Tlet_1820 [Thermotoga lettingae TMO] gi|157315275|gb|ABV34374.1| protein of unknown function DUF1078 domain protein [Thermotoga lettingae TMO] Length = 631 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G+A + + V +N++N +TVGF+ +V F + N Sbjct: 1 MMRSMFSGVAGMRNFQYAIDVVGNNIANVNTVGFKGSRVTFQTALLQTMKAARSPQNNIG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G + + GSF +TG + D A++GD +F L TR G V Sbjct: 61 GTNPIQIGLGSQLATIDKIMTQGSFENTGNKTDLAIQGDGFFVLSDGSQYYYTRAGALSV 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G+L+ +S Y V Sbjct: 121 DTNGTLIQSSTGYKVQG 137 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + F + E GEI ++ + L + G +S + T Sbjct: 517 QSFAINENGEIIGTFSNGLTDILGQVALAVFNNPAGLTEIGDSLYITSSNSGLAQIGTAG 576 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G T+ G LE SN + E +MI + F + +I + + E + Sbjct: 577 SGGRG-TLIPGALEMSNVDLAEEFTRMIIAQRGFQANARVITTADTILGELV 627 >gi|229826311|ref|ZP_04452380.1| hypothetical protein GCWU000182_01683 [Abiotrophia defectiva ATCC 49176] gi|229789181|gb|EEP25295.1| hypothetical protein GCWU000182_01683 [Abiotrophia defectiva ATCC 49176] Length = 495 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 20/161 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------- 49 M S G+A + ++ + +N++N +TVGF++ FS+V Sbjct: 1 MMRSLFSGVAGLKVHQTKMDVIGNNIANVNTVGFKSSSTVFSDVFYQTTQTASGPNKESN 60 Query: 50 ----NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 N + S + G +T LD + GD++F ++ T++G Sbjct: 61 VGGVNPKQIGLGANVSSISKNITDPGGSQTTNNALDCMINGDSFFVTKNGGRTYFTKNGA 120 Query: 106 FKVTDDGSLVSASG----KYPVLDMASVPIQIPQKDEIFNV 142 FKV DG+LV++ G + V I+ P N+ Sbjct: 121 FKVDTDGTLVNSEGAKVQGWQVDPDDPNKIK-PGPVSNLNI 160 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 11/110 (10%) Query: 141 NVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS----- 190 + G+I K++ + + S G NS + + + Sbjct: 383 TIDNAGKIYGSYDNGDLKLLGQIAVASFKNPSGLEAVGNSNFVETMNSGKFDGVGKDITT 442 Query: 191 -GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + G LE SN + + MI + F + + I + + E I Sbjct: 443 DGGKISTGMLEMSNVDLAAQFTDMITTQRGFQANSRTITTTDSILEELIN 492 >gi|320179221|gb|EFW54179.1| Flagellar basal-body rod protein FlgG [Shigella boydii ATCC 9905] Length = 156 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 19/161 (11%) Query: 92 LESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 + P G TRDG F+V +G LV+A G I IP +G G +S Sbjct: 1 MMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQV-----QPAITIPANALSITIGRDGVVSV 55 Query: 151 KGK------VIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGF 198 + + + L + G + E TP + +G+ + +G+ Sbjct: 56 TQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGL-LYQGY 114 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN N E+ MI + + + + + ++ + + + Sbjct: 115 VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 155 >gi|217077695|ref|YP_002335413.1| flagellar hook protein FlgE [Thermosipho africanus TCF52B] gi|217037550|gb|ACJ76072.1| flagellar hook protein FlgE [Thermosipho africanus TCF52B] Length = 704 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 13/143 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV----KFSEVV----GAIKNDI 52 M S G+ +Q + V +N++N T+GF+ +V FS+V+ A + Sbjct: 1 MIRSIYSGVTGLQGFQQAIDVVGNNIANVSTIGFKASRVTYATTFSQVLELSKRATELTG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 + G + S GSF +TG + D A++GD +F L+ G I TR G F Sbjct: 61 GTNPKQIGYGVKVASIDKIMSQGSFQNTGKKTDLAIQGDGFFILKDGSGKIYYTRAGNFD 120 Query: 108 VTDDGSLVSASGKYPVLDMASVP 130 + +G+LV AS + + P Sbjct: 121 LDVNGTLVQASSGLKLQGWVAEP 143 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPL 186 E F++ E G+I + + L + G + NS + + P Sbjct: 590 ESFSIAENGDIIGTFSNGLTDKLGKVALAIFNNPAGLLEAGNSLYTESANSGGAIIRQPG 649 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG ++ G LE SN + E ++I + F + ++ ++ + E + Sbjct: 650 FGGSG-SLISGALEMSNVDLSEEFTKLIIAQRGFQANARVVTTADQILQEVVN 701 >gi|304438499|ref|ZP_07398439.1| flagellar basal body and hook protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368582|gb|EFM22267.1| flagellar basal body and hook protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 711 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 17/164 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + R+ V N++N +TVG++ +V F++ + + Sbjct: 1 MMRSMFSGVSGLKGHQTRMDVVGHNIANVNTVGYKASRVTFADTLYQTSSGASAPTGNLG 60 Query: 58 -------FVASGKEYLSKEVG--SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + + G S TG D AL G+ F +++ G TRDG F+ Sbjct: 61 GINPKQIGLGMNVASIDTIFGDASAQGTGKNTDVALSGNGLFIVKNGSGTYYTRDGAFEF 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 G+ V V + + E+ + G I+ K Sbjct: 121 DAQGNYVLPGNGSFVQGWMAR-----ENGELVTTEQPGNITIKA 159 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 9/110 (8%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 + + G I+ GK+ A + + + G R + + Sbjct: 598 KNVTIDSTGTITGVYSNGKIKAEAQLAIAQFNNPSGLTRAGGNFFQQSNNSGAANVKTAS 657 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G T+ LE SN + + MI + F S + +I ++ + I Sbjct: 658 DLGCTITPSALEMSNVDLADQFSDMIVTQRGFQSNSKIITVADEMLETLI 707 >gi|241113584|ref|YP_002973419.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861792|gb|ACS59458.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 430 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSG-NYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F +ES G +LTR G F V DG+LV+ +G Sbjct: 65 RQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNGAGFTL 124 Query: 123 VL---DMASVPIQIPQKDEIFNVGEKGEISQKG 152 + D + + D + V +SQ G Sbjct: 125 MGYSYDSGVPAVVVNGFDGLVPVN----VSQSG 153 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 34/167 (20%) Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKD----------------------EIFNVG 143 DG L SA+ V + + I + D ++G Sbjct: 262 LSFDADGQLTSATDTDIVDPVTAKTITMDYSDFTQLSSDFSATGSADGQAASAVSSVSIG 321 Query: 144 EKGEISQKGKVIATMGLYSVDMSQ-----------GFVRRENSGISPNIPPTPLEDLSGV 192 G +S AT LY + ++ G V N + P + G Sbjct: 322 TDGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYSANGLSGVTVTGFPQTNGLG- 380 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ G LE SN + E+ +MI + + + + + M + Sbjct: 381 SIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 427 >gi|295700205|ref|YP_003608098.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] gi|295439418|gb|ADG18587.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] Length = 383 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 2/129 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 S+ GL+ A L + +N++N TVGF+ FS++ + +Q VA+ Sbjct: 2 SYQTGLSGLHAASNDLDVIGNNIANAHTVGFKQGTAVFSDMYANAMLGATNNQIGIGVAT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ TG LD + G+ +F L + +R+G+F+ DG+++S+ Sbjct: 62 SAIVRDFSEGTPTQTGNPLDLDIRGNGFFLLSQNGTPVYSRNGQFQQDSDGNIISSGNGL 121 Query: 122 PVLDMASVP 130 P++ A P Sbjct: 122 PLMGYAEGP 130 >gi|218886713|ref|YP_002436034.1| hypothetical protein DvMF_1618 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757667|gb|ACL08566.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 525 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 8/187 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFV 59 +S ++ L+ + +S + +N++N+ T G++++ + F +V + IDQ + Sbjct: 5 SSMYASVSGLLSTAESISVIGNNLANSSTTGYKSMSMLFEDVFYSSITTSGGIDQIGNGS 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVS 116 A GS+ T ++ A+ G+ +F +E P+ I TR G F +G LV+ Sbjct: 65 AISAISTDFSQGSYQDTSEAMNMAIAGEGYFIVEDPQNDGQIYYTRAGDFTFNTEGYLVN 124 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 +SG Y V A P D G G++ K + +V ++ + Sbjct: 125 SSG-YQVQGWAVDPDTASSTDPSTT-GALGDVQLKSRTSPASATTNVTLTVNLDSGGDDN 182 Query: 177 ISPNIPP 183 + P Sbjct: 183 STSTTDP 189 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEISQ---KGKVIA--TMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSG 191 + V E G I G+ A + L S + QG + N + T +G Sbjct: 411 TSYYVDEGGVIYATYSNGQTQALFIVALASFNNDQGLQLEGGNLYSATTESGTANIGRAG 470 Query: 192 VTVKRGF-----LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G LE+SN + EM +I + + + + + +I ++ + A+ Sbjct: 471 QGIY-GSIYGEKLEESNVDVSTEMVDLIVMQRAYQANSKVITTVDEMLQTAL 521 >gi|253996319|ref|YP_003048383.1| flagellar hook protein FlgE [Methylotenera mobilis JLW8] gi|253982998|gb|ACT47856.1| flagellar basal body FlaE domain protein [Methylotenera mobilis JLW8] Length = 421 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 SF GL+ A ++L + +N+SN +TVGF+ + +F++V + + Sbjct: 2 SFQQGLSGLNAASKQLEVIGNNVSNANTVGFKQSRAEFADVFANSITGGGGSQIGIGTNL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 G+ +T LD A+ G+ +F + S + TR+G+F++ G +V + Sbjct: 62 ATVAQQFTQGNITATNNSLDIAINGNGFFRMSSGGAVTYTRNGQFQLDKQGFIVDS 117 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 FN G I G+ + + L S G + P + P Sbjct: 310 FNTASDGTIVGRYSNGQSKNLGRVVLSSFTNPNGLQSLGGNAWAVSASSGPALTGAPGSG 369 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L GV ++ +EDSN + E+ MI + + + I ++ + + Sbjct: 370 LLGV-LQSSAVEDSNVDLTAELVNMITAQRVYQANAQTIKTQDQVLQTLVN 419 >gi|120554033|ref|YP_958384.1| hypothetical protein Maqu_1105 [Marinobacter aquaeolei VT8] gi|120323882|gb|ABM18197.1| protein of unknown function DUF1078 domain protein [Marinobacter aquaeolei VT8] Length = 637 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 +FN GL+ A L +N++N TVGF++ KV+F ++ + + + V Sbjct: 2 AFNTGLSGLRAASVDLDVTGNNIANASTVGFKSSKVQFGDLYASGFLSAGTNPIGDGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S G+ T LD A+ GD +F L + I +R G+F + +G +V+ Sbjct: 62 QDVKQSFGQGNISFTDNGLDMAISGDGFFILNNGGEIRYSRAGQFGIDKEGYVVNNQ 118 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 10/108 (9%) Query: 142 VGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGV--- 192 V ++G I G+ + + L + + + G ++ + P+ Sbjct: 528 VSDQGVIFARYTNGQSKSLGQVALAAFNNTDGLSPVGDTTWVETFESGQPVIGAPDTGTL 587 Query: 193 -TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++K +EDSN + E+ +I + + + I+ ++ I Sbjct: 588 GSIKASSVEDSNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTIIN 635 >gi|161526186|ref|YP_001581198.1| flagellar hook protein FlgE [Burkholderia multivorans ATCC 17616] gi|189349098|ref|YP_001944726.1| flagellar hook protein FlgE [Burkholderia multivorans ATCC 17616] gi|160343615|gb|ABX16701.1| flagellar basal body FlaE domain protein [Burkholderia multivorans ATCC 17616] gi|189333120|dbj|BAG42190.1| flagellar hook protein [Burkholderia multivorans ATCC 17616] Length = 414 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I A Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTAL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + I TRDG F+ +G +V++ G Sbjct: 62 ASVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAADKNGVINTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 10/111 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 F +G G+++ V+ + L + + G V + P + G Sbjct: 303 TFTIGTDGKVTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYAETAASGVPQISVPGS 362 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 363 TNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 413 >gi|221215571|ref|ZP_03588534.1| flagellar hook protein FlgE [Burkholderia multivorans CGD1] gi|221164559|gb|EED97042.1| flagellar hook protein FlgE [Burkholderia multivorans CGD1] Length = 413 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I A Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTAL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + I TRDG F+ +G +V++ G Sbjct: 62 ASVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAADKNGVINTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F +G G+++ V+ + L + + G V + P + G Sbjct: 301 TTFTIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYAETPASGVPQISVPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|255021354|ref|ZP_05293402.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] gi|254969217|gb|EET26731.1| Flagellar hook protein flgE [Acidithiobacillus caldus ATCC 51756] Length = 419 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 5/148 (3%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 +F+ L+ A L + +N+SN +TVGF++ +F++ GA V Sbjct: 1 MGAFSTALSGLQAANTDLQVLGNNISNANTVGFKSSNAEFADAYGAALVGSAPTYGQVGI 60 Query: 62 GKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA 117 G + G+ +T LD A+ G+ +F L I+ +R+G+F++ G +V Sbjct: 61 GTRVMTVAQQFTQGNIQTTNNPLDVAINGNGFFQLNYNGDIVYSRNGQFQLNSGGVIVDG 120 Query: 118 SGKYPVLDMASVPIQIPQKDEIFNVGEK 145 +G +L + + ++ V + Sbjct: 121 NGA-ELLGIQAQNGKLTGATGPLTVSQN 147 Score = 37.3 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRE----NSGISPNIPPTPLEDLS 190 ++ G I + +V+ + L + G S S +P + + Sbjct: 309 LSIDPGGNIYARYSNGQSQVLGQIALTRFANNNGLQNLGNNYWASSYSSGLPLSGAPGST 368 Query: 191 GVTVKR-GFLEDSNANSMYEMGQMI 214 + V + G +E SN N ++ +I Sbjct: 369 NLGVLQSGAVEQSNVNLSQDLVNLI 393 >gi|331269322|ref|YP_004395814.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] gi|329125872|gb|AEB75817.1| flagellar basal-body rod protein FlgG [Clostridium botulinum BKT015925] Length = 491 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 36/162 (22%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDIDQKI 56 G++ + +L +N++N T GF++ +V+F +++ G +N Sbjct: 1 MYAGISGMKVNQTKLDVTGNNIANVSTTGFKSSRVRFKDMLSQNMGEAVGPGRNQGGVNG 60 Query: 57 SFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFAL-------ESPRGII------ 99 V G + G T LD A++G +F + + GI Sbjct: 61 KQVGLGVQVAGIDSVMSQGMMQPTSRNLDVAMDGTGYFIVAKGALPESNAGGIAVSESDH 120 Query: 100 ----------LTRDGRFKVTDDGSLVSASGKYPVLDMASVPI 131 TRDG F + G+L+++ G Y V+ A I Sbjct: 121 TMSGGAFQVNYTRDGSFTLDHQGNLLTSDG-YRVMGYAINEI 161 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 17/111 (15%) Query: 142 VGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP----------PTPLEDLSG 191 V + G ++ G+ + S +G + + S P +G Sbjct: 382 VLDDGTVTALGQ----IATASFKNQEGLKKEGKNLFSNTANSGVPTVRSGLGAPKNLDNG 437 Query: 192 ---VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G LE SN + + MI T+ F + +I ++ + + I Sbjct: 438 DGYGEMLQGMLEMSNVDLAEQFTDMIVTTRAFQASGKMISTGDEILQDIIN 488 >gi|116248740|ref|YP_764581.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae 3841] gi|115253390|emb|CAK11778.1| putative flagellar hook protein flgE [Rhizobium leguminosarum bv. viciae 3841] Length = 430 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSG-NYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T + D A+ GD +F +ES G +LTR G F V DG+LV+ +G Sbjct: 65 RQAISQQGDISYTTSAYDLAISGDGFFIVESADGTPVLTRAGDFSVDSDGNLVNGAGFTL 124 Query: 123 VL---DMASVPIQIPQKDEIFNVGEKGEISQKG 152 + D + + D + V +SQ G Sbjct: 125 MGYSYDSGVPAVVVNGFDGLVPVN----VSQSG 153 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQ-----------GFVRRENSGISPNIPPTPL 186 ++G G +S AT LY + ++ G V N + P Sbjct: 316 SSVSIGADGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYSANGLSGVTVTGFPQ 375 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +++ G LE SN + E+ +MI + + + + + M + Sbjct: 376 TNGLG-SIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 427 >gi|238762359|ref|ZP_04623330.1| Lateral flagellar hook protein (FlgE-like) [Yersinia kristensenii ATCC 33638] gi|238699344|gb|EEP92090.1| Lateral flagellar hook protein (FlgE-like) [Yersinia kristensenii ATCC 33638] Length = 397 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A+ ++L+T+++N++N+ T GF++ + +FS + Q + SG Sbjct: 2 SFSIANTGLSAVTEQLNTISNNIANSATKGFKSGRTEFSSMYAQ-----SQPLGVGVSGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 ++ GS TG +D A+ G+ +F +++ G TR G F ++G LV+ASG Sbjct: 57 SQSIRKEGSIDRTGNAMDLAISGNGFFVVKNSNGDEAYTRAGMFTTDNNGLLVNASG 113 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 13/126 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V+ S Y ++ +F GE +GK + L + + G + Sbjct: 272 VNKSNGYTAGTKNGERVE--SDGSVFATFSNGERMLQGK----LALANFANANGLAAQNG 325 Query: 175 ------SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 S + P L G ++ G LE SN + E+ ++ + + + T +I Sbjct: 326 TTWSATSKSGAALLGAPGTGLLG-GIEVGALEASNVDLTAELVGLMTAQRNYQANTKIIS 384 Query: 229 ENEKSM 234 N+ M Sbjct: 385 TNDSMM 390 >gi|224532235|ref|ZP_03672867.1| flagellar hook protein FlgE [Borrelia valaisiana VS116] gi|224511700|gb|EEF82106.1| flagellar hook protein FlgE [Borrelia valaisiana VS116] Length = 442 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + R+ V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTRMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDTRG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVAAIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQARIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|320325094|gb|EFW81163.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. B076] Length = 586 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 RLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 +VG G + K I + L S QG R E++ P Sbjct: 473 SSLSVGRDGILRAGFANGMNKNIGQVILASFANPQGLQARSDTCWTESADSGVADYDVPG 532 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 G + G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLIGDG-LEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|315497293|ref|YP_004086097.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] gi|315415305|gb|ADU11946.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] Length = 459 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ G++A A L+ +++N++N +T ++++ F+ V + + A Sbjct: 3 ISSAMLSGVSALSANSTALAAISNNIANVNTTAYKSVSTSFAANVSSSGSSTYSSGGVSA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRFKVTDDGSLVS 116 S E G+ +T + LD A++G +F + + G TRDG F V D+G LV+ Sbjct: 63 S-TALSITEAGALQTTTSSLDLAIDGSGFFVVSEGADGSGGSYYTRDGSFSVNDEGYLVN 121 Query: 117 ASGKY 121 +SG Y Sbjct: 122 SSGYY 126 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 12/118 (10%) Query: 132 QIPQKDEIFNVGEKGE---ISQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPP--- 183 + + + G I + G +V+A + + + + G + + + + Sbjct: 339 TVFSDLSDVTIADDGTVNAIYEDGTSRVLAQIPVATFVNANGLTAKSGNVYALSSESGSY 398 Query: 184 ---TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 TP +G+ + LE S + E +I + + +++ + +I +++ M I Sbjct: 399 TLRTPGSGGAGL-LASSSLEASTVDLSSEFTSLITIQRAYSAASKIITTSDEMMQTVI 455 >gi|304310787|ref|YP_003810385.1| Flagellar basal body FlaE [gamma proteobacterium HdN1] gi|301796520|emb|CBL44728.1| Flagellar basal body FlaE [gamma proteobacterium HdN1] Length = 447 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 20/154 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVAS 61 SFNI ++ A + L ++N++N T GF+ + +F ++ GA + S V Sbjct: 2 SFNIAISGLKAAQSDLEVTSNNIANVATTGFKKSRAEFGDIYATGAFGSTKTAIGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSAS 118 G+ T LDF + G+ +F + G I TR G F V DG++V++S Sbjct: 62 QAVSQQFNQGNMNFTQNTLDFGVSGEGFFVMSPNIGSSERIYTRAGAFGVNADGNVVNSS 121 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 + ++F V E G ++ Sbjct: 122 DQLL---------------QVFPVNEDGTVTSTA 140 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 11/112 (9%) Query: 140 FNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT 193 V + G + G+ + + L QG + N+ + L +G + Sbjct: 336 IEVDDSGLVRAAYSNGQTVSVGKVALARFPNPQGLSQIGNTSWKETSASGEALAGEAGTS 395 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ G LE SN + E+ +I + F + I+ ++ AI N+ Sbjct: 396 SYGLIRAGALEVSNVDLTTELVGLITAQRNFQANAKSIETTN-TVTNAIINL 446 >gi|257484948|ref|ZP_05638989.1| flagellar basal-body protein, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011043|gb|EGH91099.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 586 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 RLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 +VG G + K I + L S QG R E++ P Sbjct: 473 SSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESADSGVADYDVPG 532 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 G + G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLIGDG-LEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|209547530|ref|YP_002279448.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538774|gb|ACI58708.1| protein of unknown function DUF1078 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 430 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +TVG++ + FS +V + + V + Sbjct: 6 SMKTAVSGMSAQANRLSTVSDNIANANTVGYKAVSTSFSSLVLPSSSG-NYNSGGVQTSV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 + G T ++ D A+ GD +F ++S G +LTR G F V DG+LV+ +G Sbjct: 65 RQAISQQGDISYTTSDYDLAISGDGFFIVQSADGTPVLTRAGDFSVDSDGNLVNGAGFTL 124 Query: 123 VL---DMASVPIQIPQKDEIFNVGEKGEISQKG 152 + D + + D + V +SQ G Sbjct: 125 MGYSYDSGVPAVVVNGFDGLVPVN----VSQSG 153 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 34/167 (20%) Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKD----------------------EIFNVG 143 DG L SA+ V + + I + D ++G Sbjct: 262 LSFDADGQLTSAADTDIVDPVTAQTITMDYSDFTQLASDFSATGSADGQAASAVSSVSIG 321 Query: 144 EKGEISQKGKVIATMGLYSVDMSQ-----------GFVRRENSGISPNIPPTPLEDLSGV 192 G +S AT LY + ++ G V N + P + G Sbjct: 322 TDGVVSVSYANGATKALYQIPLATVASPDNLTLLSGNVYSANGQSGVTVTGFPQTNGLG- 380 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ G LE SN + E+ +MI + + + + + M + Sbjct: 381 SIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 427 >gi|330986469|gb|EGH84572.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 586 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 RLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 +VG G + K I + L S QG R E++ P Sbjct: 473 SSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESADSGVADYDVPG 532 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 G + G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLIGDG-LEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|312882659|ref|ZP_07742396.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] gi|309369620|gb|EFP97135.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] Length = 435 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 S I L+ A + L+T ++N++N +T GF+ + +F++V + V + Sbjct: 2 SSYISLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSIFTHAKTTPGQGVQA 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSA 117 K GS I T +D + G +FA+ +P LTR+G F + D +V++ Sbjct: 62 SKVAQQFHEGSSIYTNNPMDLRINGTGFFAVAKDRLTPTTNELTRNGAFHLNKDNYMVTS 121 Query: 118 SGKYPVL 124 + ++ + Sbjct: 122 NDEFLLG 128 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + + + ++ + + V QG ++ + E Sbjct: 322 TKVDFDENGSVLGTYSNGENVILGRVAMVRVANEQGLDKKGGTQWDATQFSGDKIWGESN 381 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T++ G LE +N + E+ +I + F + + ++ + + ++ Sbjct: 382 KGSFGTIRSGTLEQANIDMTQELVDLIQAQRNFQANSRALEVHNTTQQNILQ 433 >gi|56460252|ref|YP_155533.1| flagellar hook protein FlgE [Idiomarina loihiensis L2TR] gi|56179262|gb|AAV81984.1| Flagellar hook protein FlgE [Idiomarina loihiensis L2TR] Length = 449 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 19/154 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 SF I L+ A ++ L A+N+SN T GF+ + +F++V +I N + K+ V + Sbjct: 2 SFKIALSGINASQKDLDVTANNISNVKTSGFKQSRAEFADVYATSIFNAGNTKVGDGVLT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---LTRDGRFKVTDDGSLVSAS 118 G+ T LD A+ G+ +FA G TR G FK+ DD +V Sbjct: 62 SSVAQQFSQGTLEFTENSLDMAISGNGFFATTDGLGSRDMTYTRSGAFKLNDDKFIVDNQ 121 Query: 119 GKYP--------------VLDMASVPIQIPQKDE 138 G Y V + PI+IP Sbjct: 122 GNYLQGYQVDRNSGTNSSVALATTQPIRIPDVAG 155 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 ++ + G I+ + + + + QG + + +I PL + Sbjct: 336 TNVDIDKSGLIAATYSNGDVQYLGQVAIVRFANEQGLTQIGGTKWRESIDSGEPLSGEAN 395 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ LE+SN N E+ +I + F + + ++ N ++ + I I Sbjct: 396 TGTFGGIEASALENSNVNLTKELVDLITAQRNFQANSRSLEVNN-TINQTILQI 448 >gi|90411005|ref|ZP_01219019.1| flagellar hook protein [Photobacterium profundum 3TCK] gi|90328218|gb|EAS44529.1| flagellar hook protein [Photobacterium profundum 3TCK] Length = 435 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 FNI L+ A ++ L+T ++N++N +T GF+ + +F +V + N V + Sbjct: 2 GFNISLSGIGASQKDLNTTSNNIANANTYGFKESRAEFGDVYSSSIFSNAKTTTGGGVQT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSA 117 GS I T +D + G +FA+ P+ LTR+G F + D +V++ Sbjct: 62 SVVAQQFHEGSSIYTNNPMDLRISGSGFFAVADDKLQPQNNNLTRNGAFHLNKDNQVVNS 121 Query: 118 SGKYPVL 124 G++ + Sbjct: 122 EGQFLLG 128 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 11/113 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----ED 188 ++ KG I + + +G+ V QG V + + + Sbjct: 323 KVDIDAKGSIVATYSNGENVTLGRVGMVRVANEQGLVSKGGTQWATGQDSGAAIWGEASQ 382 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + +VK G LE SN + E+ +I + F + + + E + + + I I Sbjct: 383 GAFGSVKSGTLEQSNIDMTQELVDLITAQRNFQANSRAL-EVDNQLQQTILQI 434 >gi|330975976|gb|EGH76042.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 442 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVA 60 SFNIGL A + L +N++N T GF++ + +F++ S V Sbjct: 2 SFNIGLCGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVR 61 Query: 61 SGKEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + GS + T LD A+ GD +F + + + TR G F +G +V++S Sbjct: 62 TAAVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 120 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +VI L S QG + + + P G + LE+SN + Sbjct: 349 QVIGQTSLTSFANVQGLAQAGGTNWRETFASGVPVSGAPQSGTLGYITGQ-ALEESNVDL 407 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 408 TMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 440 >gi|320329353|gb|EFW85346.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] gi|330880525|gb|EGH14674.1| flagellar hook protein FlgE [Pseudomonas syringae pv. glycinea str. race 4] Length = 586 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 RLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 +VG G + K I + L S QG R E++ P Sbjct: 473 SSLSVGRDGILRAGFANGMNKNIGQVILASFANPQGLQARSDTRWTESADSGVADYDVPG 532 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 G + G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLIGDG-LEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|32477561|ref|NP_870555.1| flagellar hook protein FlgE [Rhodopirellula baltica SH 1] gi|32448115|emb|CAD77632.1| flagellar hook protein FlgE [Rhodopirellula baltica SH 1] gi|327543123|gb|EGF29559.1| flagellar hook protein FlgE [Rhodopirellula baltica WH47] Length = 811 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 38/232 (16%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDID 53 Q++ L A E ++ + +N++N TVGF++ F+ G N+ Sbjct: 4 QSALTTALTGLSAAETQIDVIGNNLANAQTVGFKSSDAVFATQFLQTLSLGAGPSANNGG 63 Query: 54 QKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKV 108 + G + + G+ + + D A++GD +F +++ G + TR+G FK+ Sbjct: 64 TNPRQIGLGVQVAEIAANHNQGTIEISSSSSDLAIQGDGFFQVQAADGEKLYTRNGIFKL 123 Query: 109 TDDGSLVSASG----------KYPVLDMASVPIQIPQKDEIF-----------NVGEKGE 147 D LV+A+G ++ + + VP+ +P + + +G+ Sbjct: 124 NSDAELVNATGQRLLGYGIDEQFRLQTDSLVPLSVPLGTKTVAKATENVSFEGTLTPEGD 183 Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFL 199 ++ G+VI ++ L + R + SG+S P TV G L Sbjct: 184 VATAGQVIESLHLGDSQVP----RPDASGVSIESSPIADHTSVTGTVGAGSL 231 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------ 182 P F VGE G I + + + L G R + + + Sbjct: 693 PGVLNSFIVGEDGTIRGVFSNGISRDLGQLQLARFANPAGLEARGLNLYAEGVNTGLPVT 752 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P E+ G TV G LE SN + ++ +++ + ++ + +I ++ + E + Sbjct: 753 GQPGENGIG-TVIGGALELSNTDIGKDLVELVLASTQYRGNSRVITTTQQLIDELLN 808 >gi|298487856|ref|ZP_07005896.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157581|gb|EFH98661.1| Flagellar hook protein flgE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 586 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 RLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 +VG G + K I + L S QG R E++ P Sbjct: 473 SSLSVGRDGILCAGFTNGMNKNIGQVILASFSNPQGLQARSDTRWTESADSGVADYDVPG 532 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 G + G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLIGDG-LEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|289627764|ref|ZP_06460718.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866423|gb|EGH01132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 586 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 RLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 +VG G + K I + L S QG R E++ P Sbjct: 473 SSLSVGRDGILCAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESADSGVADYDVPG 532 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 G + G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLIGDG-LEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|289651646|ref|ZP_06482989.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aesculi str. 2250] Length = 586 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 RLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 +VG G + K I + L S QG R E++ P Sbjct: 473 SSLSVGRDGILCAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESADSGVADYDVPG 532 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 G + G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLIGDG-LEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|315657509|ref|ZP_07910391.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491981|gb|EFU81590.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 484 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 15/198 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---------IKND 51 M S G++ + L ++N++N +T GF++ +F + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVRSGAAPRLNER 60 Query: 52 IDQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V G + S G+ TG LD + GD ++ L G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGSSVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 + G +V+A G + M I N+ + +G+ + +Y ++ Sbjct: 121 GLDAQGQVVAADGSFVQGWMGDKDGTINASGTPGNITLPLTKTVEGRPTTKV-IYGGNIP 179 Query: 167 QGFVRRENSGISPNIPPT 184 + + +G + Sbjct: 180 ADQIYMDPTGSKTSPDNA 197 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNI---PPTPLEDLSG 191 ++V G I + + +A + + S G + +S P E +G Sbjct: 372 YSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAGSSYFVETGNSGQPQIGEAGTG 431 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +E SN + E +I + F + + +I +++ + E + Sbjct: 432 QRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRVITTSDEILQELVN 481 >gi|283782100|ref|YP_003372855.1| flagellar basal body FlaE domain-containing protein [Pirellula staleyi DSM 6068] gi|283440553|gb|ADB18995.1| flagellar basal body FlaE domain protein [Pirellula staleyi DSM 6068] Length = 815 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 32/227 (14%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK------------N 50 ++ L A E ++ V +N++N+ TVGF+ F+ + Sbjct: 5 SALTTALTGMTAAETQIDVVGNNLANSQTVGFKASDSVFATQFLQTQSLGSGPTSGSGGT 64 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVT 109 + Q + G+ + D A++G+ +F ++ +G + TR+G+FK Sbjct: 65 NPRQTGLGTRVAEITPDFTQGTIEVSSNPSDLAIQGEGFFIVQDSQGEQVYTRNGQFKTN 124 Query: 110 DDGSLVSASGKYPVLDMAS-----------VPIQIPQKDEIF-----NVGEKGEISQKGK 153 D LV+ +G+ VL VP++IP NV +G +S G Sbjct: 125 SDNELVTTTGQ-RVLGFGVDQDFEIQTTELVPLEIPLGSAAVAQATQNVYLQGVLSPSGD 183 Query: 154 VIATMG-LYSVDMSQGFVRREN-SGISPNIPPTPLEDLSGVTVKRGF 198 V T + S + + R + + + P + T +G Sbjct: 184 VADTAAVIQSATLGDALIPRPDVDASTAAVAAIPSSAGTTSTHTQGA 230 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNI------PPTPL 186 + +GE G I + + + + L G +R + + + P Sbjct: 701 TSYIIGEDGVIRGVFSNGVSRDLGQVRLARFANPAGLEQRGQNLFAQGVNSGLPVEGNPG 760 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 D G ++ G +E SN + + ++ T ++ +I ++ + E + Sbjct: 761 NDGMG-SIISGAVELSNTDIGKNLIDLVLATTQYRGNARVITAAQELLDELLN 812 >gi|91225873|ref|ZP_01260842.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269965424|ref|ZP_06179543.1| flagellar hook protein [Vibrio alginolyticus 40B] gi|91189523|gb|EAS75799.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269829903|gb|EEZ84133.1| flagellar hook protein [Vibrio alginolyticus 40B] Length = 437 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F++V N + + Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ +P+ LTR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKERLTPQQNELTRNGAFHLNKENYMVTAND 122 Query: 120 ----KYPVLDMAS-------VPIQIPQKDEIFNVGEKGEISQK 151 Y V + PI IP + E+ Sbjct: 123 EFLLGYQVDPSSGEVSSYEPQPINIPAEFGKPKQTANIEVGVN 165 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ + + L V QG ++ + E Sbjct: 324 TKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESN 383 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 384 KGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435 >gi|71734109|ref|YP_275562.1| flagellar basal-body protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554662|gb|AAZ33873.1| flagellar basal-body protein, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 586 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 RLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 +VG G + K I + L S QG R ++ + + D+SG Sbjct: 473 SSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESADSGVADYDVSG 532 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLIGDGLEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|157147102|ref|YP_001454421.1| hypothetical protein CKO_02879 [Citrobacter koseri ATCC BAA-895] gi|157084307|gb|ABV13985.1| hypothetical protein CKO_02879 [Citrobacter koseri ATCC BAA-895] Length = 396 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI + A+ ++L+ +++N++N+ TVGF++ + +FS + Q + SG Sbjct: 2 SFNIATSGLNAITEQLNAISNNIANSGTVGFKSGRAEFSSLYAE-----SQPLGVGVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ +F + G TR G F G+L++ G Y Sbjct: 57 TQSITRGGNISTTGNALDLAISDSGFFMVRDSTGTTAYTRAGYFGTDSSGNLINNLGMYL 116 Query: 123 VLDMASVPIQIPQKDEIFNVGE 144 P+ + E+ +G Sbjct: 117 ----QGYPVNANGEIEVGTIGN 134 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%) Query: 142 VGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRREN------SGISPNIPPTPLEDLS 190 + E G + G+ + + L + G ++ + + TP L Sbjct: 287 IDEDGSVYATFSNGERMLQGQLVLANFANPNGLASKDGTTWVQTASSGAPLTGTPGTGLL 346 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G +VK G LE SN + E+ ++ + + + T +I N+ M Sbjct: 347 G-SVKSGALESSNVDLTSELVGLMTAQRNYQANTKVISTNDNMM 389 >gi|220934394|ref|YP_002513293.1| flagellar basal body FlaE domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995704|gb|ACL72306.1| flagellar basal body FlaE domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 408 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVASG 62 F L+ A L +N++N+ T GF+ + +F++V I Q + V Sbjct: 3 FRTALSGLNAASADLRVTGNNIANSGTTGFKQSRAEFADVFALSYGGISQTAIGTGVRLS 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G+ TG LD A+ G +F L + +R G F+V +G +V+ G+ Sbjct: 63 AVTQQFSQGNIEFTGNNLDLAMNGQGFFVLNDSGTQVYSRAGAFQVNREGYVVNTQGQ 120 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-----PLE 187 ++ G + + + + + L + QG + ++ + + Sbjct: 295 NSIDIDPTGVVFARFTNGQSQALGRVALANFANPQGLQQLGDNAWGESFAAGDVILGEAD 354 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ G LE SN + ++ ++I + F + +I + I Sbjct: 355 TGNFGLIQAGGLESSNVDIAEQLVKLITAQRNFQANAQVITTADAVTQTIIN 406 >gi|27464952|gb|AAN63049.1| flagellar component FlgE [Vibrio vulnificus] Length = 434 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V + N V + + Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLVTNAKTTPGGGVQANQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P LTR+G F ++ D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRMVPNQNELTRNGAFHLSKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 +Y V P+ IP + + + + + Sbjct: 123 EYLLGYQVDPLSGDVASYEPQPLNIPAEFGKPKQTSNVTVGVNLPARGALKDPQAFDFED 182 Query: 166 SQGFVRRENS 175 + R +S Sbjct: 183 PDTYNRSTSS 192 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 ++ E G + + + + L V QG ++ + + + E Sbjct: 321 TKVDIDENGSVYGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWNSTNNSGDKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G TV G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 381 KGSFGTVSSGALEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 432 >gi|77165838|ref|YP_344363.1| hypothetical protein Noc_2375 [Nitrosococcus oceani ATCC 19707] gi|254433154|ref|ZP_05046662.1| conserved domain protein [Nitrosococcus oceani AFC27] gi|76884152|gb|ABA58833.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207089487|gb|EDZ66758.1| conserved domain protein [Nitrosococcus oceani AFC27] Length = 425 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVAS 61 +FN L+ A L A+N++N T GF+ + +F+++ V + S V Sbjct: 2 AFNTSLSGLNAASSDLDITANNIANASTTGFKRSRGEFADIFAVSSFGRSQTAVGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 K E G+ T LD A+ G FAL + ++ +R G F V +G +V++S Sbjct: 62 NKTAQQFEQGNLDFTQNSLDLAISGRGLFALSPSLNSDDLVYSRAGAFSVDKEGYVVNSS 121 Query: 119 GKY 121 G+Y Sbjct: 122 GQY 124 Score = 68.1 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 10/108 (9%) Query: 142 VGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT-- 193 + G I + + L QG + N+ + + T L +GV Sbjct: 316 ISNTGIIQANYSNGQNSTLGKIALAQFPNEQGLRQLGNNAWAETVSSGTALAGEAGVGSF 375 Query: 194 --VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ +I + F + I+ I Sbjct: 376 GLIQTGALESSNVDLTAELVHLITAQRNFQANAKAIETASTVTDTIIN 423 >gi|87119676|ref|ZP_01075573.1| hypothetical protein MED121_07045 [Marinomonas sp. MED121] gi|86165152|gb|EAQ66420.1| hypothetical protein MED121_07045 [Marinomonas sp. MED121] Length = 565 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 11/159 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKISFVA 60 FN L+ A LS DN++N+DT GF+ +++F ++ + S V+ Sbjct: 2 GFNTALSGIKASADALSVTGDNIANSDTTGFKQSRIEFGDLYNTSVVGAGSNNTIGSGVS 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G+ T LD A++G +F L TR G FK+ DG LV+ G Sbjct: 62 VNNIAQAFSAGNIAYTDNNLDLAVDGTGFFVLNLGGTQAYTRAGDFKLDADGFLVTNDGA 121 Query: 121 YP--------VLDMASVPIQIPQKDEIFNVGEKGEISQK 151 ++ +Q+P ++ Sbjct: 122 NVEGYNAVDGIVGGNLENLQVPTDRIAPQATSDIQLQIN 160 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Query: 150 QKGKVIATMGLYSVDMSQGFVRREN----SGISPNIPPTPLEDLSGVTVKRGF-LEDSNA 204 Q+ V+ + L + D + G + + + + +G LE+SN Sbjct: 469 QQTSVLGQIALATFDNTDGLTPSGDTSWVASSDSGQANVGKPNTGTLGSVQGAALEESNV 528 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + E+ +I + + + + + E E ++ + I N+ Sbjct: 529 DLTSELVALIEAQRNYQANSKTL-ETENTVTQTIINL 564 >gi|221199739|ref|ZP_03572782.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2M] gi|221208656|ref|ZP_03581656.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2] gi|221171467|gb|EEE03914.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2] gi|221179978|gb|EEE12382.1| flagellar basal body protein FlaE [Burkholderia multivorans CGD2M] Length = 413 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I A Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTAL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + I TRDG F+ +G +V++ G Sbjct: 62 ASVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAADKNGVINTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F +G G+++ V+ + L + + G V + P + G Sbjct: 301 TTFTIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYAETAASGVPQISVPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|15964432|ref|NP_384785.1| flagellar hook protein FlgE [Sinorhizobium meliloti 1021] gi|307311574|ref|ZP_07591215.1| fagellar hook-basal body protein [Sinorhizobium meliloti BL225C] gi|20141447|sp|Q9X5Y0|FLGE_RHIME RecName: Full=Flagellar hook protein flgE gi|15073609|emb|CAC45251.1| Flagellar hook protein [Sinorhizobium meliloti 1021] gi|306899591|gb|EFN30220.1| fagellar hook-basal body protein [Sinorhizobium meliloti BL225C] Length = 406 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A RLSTVA+N++N +T G++ +FS ++ N V + Y Sbjct: 9 TGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGSYNS-GGVQTEVRYS 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG------ 119 + G+ T + D A++G +F +E G TR G F +G+LV+ASG Sbjct: 68 ISQQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRAGSFVPDSEGNLVNASGFTLMGY 127 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 +Y +V + N+ G I+ Sbjct: 128 EYEAGVDPTVVVNGFDGLTRVNLASDGLIAA 158 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 10/135 (7%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIAT--MGLYSVDMSQGF 169 + G D S+ P K + + G + GK+ + L +V Sbjct: 269 TTQLGYAFNADGGSIDGNAPSKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKL 328 Query: 170 VRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + S + + +G + G LE SN + E+ MI + + + + Sbjct: 329 RPESGNVYSQGVDSGVIITGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANS 388 Query: 225 TLIDENEKSMLEAIR 239 + + + + Sbjct: 389 KVFQTGSELLEVLVN 403 >gi|115523193|ref|YP_780104.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisA53] gi|115517140|gb|ABJ05124.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris BisA53] Length = 411 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 10/161 (6%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G + A +LSTVADN++N +T G++ +FS ++ + V + Y Sbjct: 9 TGGSGMNAQSNKLSTVADNIANVNTTGYKRASTEFSSLILKSGS-GSYNSGSVETQVRYA 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G+ T + D A++G+ +FA+ RG LTR G F +G+LV+A G Y + Sbjct: 68 ISDPGTTQYTTSATDLAIQGNGFFAVADARGTPFLTRAGSFVPDGEGNLVNAGGYYLLGY 127 Query: 126 M--ASVPIQIPQ---KDEIFNVGE---KGEISQKGKVIATM 158 P + E N+G+ +G S KG A + Sbjct: 128 NLKNGPPNVVANGLTGLEKVNIGQTALEGNPSTKGTASANL 168 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGE---ISQKGKVIAT--MGLYSVDMSQGFV-RRENSGISPNIPPTPLE 187 P E V G I G +AT + L +V V N Sbjct: 293 PSAIEKVEVDGDGTMYAIYNDGTRLATYRIPLATVPSPDKLVPEVGNVYSVGIDSGNVQV 352 Query: 188 DLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 D +G TVK LE SN + E+ MI + + + + + + + Sbjct: 353 DFAGNSGLGTVKAKALEQSNVDLASELTAMIESQRGYTANSKVFQTGADLLDVLVN 408 >gi|254230140|ref|ZP_04923535.1| FlgE [Vibrio sp. Ex25] gi|262394939|ref|YP_003286793.1| flagellar hook protein FlgE [Vibrio sp. Ex25] gi|151937333|gb|EDN56196.1| FlgE [Vibrio sp. Ex25] gi|262338533|gb|ACY52328.1| flagellar hook protein FlgE [Vibrio sp. Ex25] Length = 437 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F++V N + + Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ +P+ LTR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKERLTPQQNELTRNGAFHLNKENYMVTAND 122 Query: 120 ----KYPVLDMAS-------VPIQIPQKDEIFNVGEKGEISQK 151 Y V + PI IP + E+ Sbjct: 123 EFLLGYQVDPSSGEVSSYEPQPINIPAEFGKPKQTANIEVGVN 165 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ + + L V QG ++ + E Sbjct: 324 TKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESN 383 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 384 KGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435 >gi|320353949|ref|YP_004195288.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] gi|320122451|gb|ADW17997.1| flagellar hook-basal body protein [Desulfobulbus propionicus DSM 2032] Length = 423 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFV 59 ++ ++ Q ++ +N++N+ TVGF+T FS+++ A + Q Sbjct: 5 SALFTAISGLQGSSQAMTVTGNNIANSSTVGFKTSSTVFSDLLSANIASSSGNSQVGRGS 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSA 117 S G F ST + D A+EG +F + P + TR+G F DDG LV+A Sbjct: 65 QVQTVQTSFSQGGFESTESATDIAIEGSGFFIVGDPLSDTSLYTRNGNFSFDDDGYLVTA 124 Query: 118 SGKYPVLD 125 G Y V Sbjct: 125 DG-YRVQG 131 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Query: 138 EIFNVGEKGEISQ---KGK--VIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 ++ G +S G+ +A + L + S G +S TP G Sbjct: 310 TDVDIAADGTVSAVYSNGETIPVAMIALATFINSDGLDAVGSSLYRETGESGTPTIGYPG 369 Query: 192 VTVKRG-----FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G LE SN + E +I + +++ + +I + + E + Sbjct: 370 AS--QGTLITQALELSNVDLATEFVDLITIQNAYSANSKVITTTNEMLDELVN 420 >gi|242280467|ref|YP_002992596.1| hypothetical protein Desal_3005 [Desulfovibrio salexigens DSM 2638] gi|242123361|gb|ACS81057.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 549 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 13/193 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVA 60 S G+ A ++S + +N++N +TVGF++ K+ F + + + Q V Sbjct: 6 SLFSGITGLQAHGDKMSVLGNNIANVNTVGFKSAKMHFEDAISQDMSTATGVAQVGRGVQ 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSLVSAS 118 G Y GSF +T D A+ GD +F + TR G F+ DG L Sbjct: 66 VGAIYADFAQGSFETTSESTDLAIGGDGFFIVSPKDEETSYYTRAGNFRFDKDGYLTDPH 125 Query: 119 G----KYPVLDMASVPIQ----IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 G + V D ++ + + + + VG +I + A +++M Sbjct: 126 GYVLQGWQVQDESNSQVATGASVSTSNAVRTVGVPTDIRLENFQSAPKATTTINMITNLD 185 Query: 171 RRENSGISPNIPP 183 +E S + + P Sbjct: 186 SQEASRSTDSTAP 198 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP----TPLED 188 + +V G ++ G++ + + + S + G R + + T L + Sbjct: 435 QSTSVSRDGVLTGRYSNGQIQELYVLTIASFNNDWGLRREGGNLFTQTRESGDALTGLPN 494 Query: 189 LSG-VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG ++ LE SN + E MI + F + + +I + M E I+ Sbjct: 495 SSGKGSIASNSLEMSNVDLAVEFVSMITTQRGFQANSKVITTTDSMMGELIQ 546 >gi|330961197|gb|EGH61457.1| flagellar hook protein FlgE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 582 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N T+GF++ + +FS + +GA N + + Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGGNAVGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + + + E + IS+G LD ++G+ +F + + TR G F + +V + Sbjct: 62 ASVQQNFNQGE--TVISSGNPLDMRIQGNGFFVVSDQGALAYTRAGAFLKDAENFVVDSD 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLSG 191 + +VG G + K I + L S G R + + D G Sbjct: 469 KSLDVGRDGILRAGFTNGMTKDIGQVVLASFANPHGLQPRSDTRWTATADSGVAEYDRPG 528 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 529 VGTLGSIVSGGLEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 581 >gi|268680907|ref|YP_003305338.1| flagellar hook protein FlgE [Sulfurospirillum deleyianum DSM 6946] gi|268618938|gb|ACZ13303.1| flagellar hook protein FlgE [Sulfurospirillum deleyianum DSM 6946] Length = 851 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 14/134 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------- 50 M + G+ A + + ++N++N +T G++ + FS ++ + Sbjct: 1 MMRALWAGVTGLQAHQIAMDVESNNIANVNTTGYKYSRANFSNLLSQTVSIATAPQGELG 60 Query: 51 --DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRF 106 + Q E GS +T + D A+ GD +F + G TR+G F Sbjct: 61 GKNSMQIGLGTTISTVTKIFEQGSIETTDKDTDLAISGDGFFVVSPDGGTTYKYTRNGDF 120 Query: 107 KVTDDGSLVSASGK 120 +G+ V ++G Sbjct: 121 SFDANGNFVDSNGY 134 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 +V E G I G+ +A + + + + G + I + P+ +G Sbjct: 740 LSVDETGTIIGSFTNGRSFALAQVAMSTFTNNGGLESDGGNCYIQTSNSGDPVFGQAGTG 799 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V+ LE SN + + Q+I + + + + + I ++ + ++ Sbjct: 800 GKGSVQSSSLEMSNVDLSRSLTQLIVIQRGYQANSKTITTADEMLNTLLQ 849 >gi|167630298|ref|YP_001680797.1| flagellar hook protein [Heliobacterium modesticaldum Ice1] gi|167593038|gb|ABZ84786.1| flagellar hook protein [Heliobacterium modesticaldum Ice1] Length = 442 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 13/156 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G+ A + R+ T+ +N++N +T+GF+ +V F++ + Sbjct: 1 MMRSLFSGVTALRNHQTRMDTIGNNIANVNTIGFKKSRVTFADALNQTIRGASSPQGGRG 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 S TG D A+EGD +F L+ TR G F + Sbjct: 61 GTNPMQVGLGMNIATMETVFTPASVQGTGKNSDLAIEGDGFFLLDDGGARYYTRAGNFDL 120 Query: 109 TDD-GSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 + + + +G + +A +I + + Sbjct: 121 DTEYNFIRTDNGMKVMGYIADATGEIDANGDPVPIN 156 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGI------SPNIP 182 + + + G ++ + +A + + + G + ++ Sbjct: 324 DGDLKSYAIDAAGVLTGTYSNGQNRKMAQVAVTTFSNPAGLFKAGSNLYTRTNNSGEPKT 383 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P G + G LE SN + E MI + F + + +I ++ + E + Sbjct: 384 GQPAVGGRGA-ITPGALEMSNVDLSQEFTDMITTQRGFQANSRIISVSDSMLEELVN 439 >gi|329898289|ref|ZP_08272372.1| Flagellar hook protein flgE [gamma proteobacterium IMCC3088] gi|328920854|gb|EGG28297.1| Flagellar hook protein flgE [gamma proteobacterium IMCC3088] Length = 975 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 7/144 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L A LS ++N++N+ T GF+ F ++ + Sbjct: 2 SFYTSLTGLNAATTELSVTSNNIANSATAGFKRSSASFGDIFATSPLQRASAVVGQGVAL 61 Query: 64 EYLS--KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 + +S G + LD A+ GD +F L+S G TR+G F + + +V+++G+ Sbjct: 62 KEISQEFSQGFVQFSSNSLDLAITGDGFFPLQSSDGSRVYTRNGSFMLNEQNQMVNSAGQ 121 Query: 121 ----YPVLDMASVPIQIPQKDEIF 140 PV P Sbjct: 122 ALLSLPVDSTNKADFSQPPSALSI 145 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 13/118 (11%) Query: 134 PQKDEI-FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGI------SPNI 181 P+ D + N+GE G + G + + L + +G + NSG Sbjct: 856 PEGDLVGVNIGEDGLVVASYSNGSQKSLGKIILANFATPKGLRQVGNSGFVASSESGEAR 915 Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P G T++ G E SN + E+ +I + F + I+ + I Sbjct: 916 QGEPGSAGFG-TIRAGATERSNVDLTAELVNLITAQRNFQANAKAIETSSTLTSTIIN 972 >gi|126668558|ref|ZP_01739512.1| flagellar hook protein E [Marinobacter sp. ELB17] gi|126626963|gb|EAZ97606.1| flagellar hook protein E [Marinobacter sp. ELB17] Length = 435 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 2/144 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +FN GL+ A L +N++N TVGF+ +V+F ++ Sbjct: 2 AFNTGLSGLRAAAVDLDVTGNNIANASTVGFKGSRVQFGDLYANGFLSSGNAPVGDGISV 61 Query: 64 EYL--SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + + S G+ T LDFA++GD +F L + + +R G+F DG +V+ Sbjct: 62 QSVKQSFGQGNVSFTDNGLDFAIDGDGFFVLNNGGELRYSRAGQFGTDKDGFVVNNQNMR 121 Query: 122 PVLDMASVPIQIPQKDEIFNVGEK 145 +A + + +G Sbjct: 122 VQGFVADAAGNLSGIRDDLQIGSD 145 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 10/108 (9%) Query: 142 VGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----EDLSG 191 V ++G I G+ + + L S + + G ++ + + Sbjct: 326 VSQQGVIFARYTNGQSKSLGQVALASFNNTDGLSPSGDTSWVETFESGQAVIGRPDSGTL 385 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ +E+SN + E+ +I + + + I+ ++ I Sbjct: 386 GAIQSSSVEESNVDLSAELVNLIIAQRNYQANAKTIETSDAVTQTIIN 433 >gi|302343734|ref|YP_003808263.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301640347|gb|ADK85669.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 786 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 13/157 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T+ G+A Q LS VADN++N +T G++ +V F +V+ ++ V Sbjct: 3 MLTAMWAGVAGLNVHGQALSAVADNVANVNTHGYKASRVNFGDVMIHSLTVGGTVVNQVG 62 Query: 61 SGKEYLSKE----VGSFISTGTELDFALEGDAWFAL-ESPRGI---ILTRDGRFKVTDDG 112 +G + LS + GSF +T D A+ G +F + + G TR G+F + +G Sbjct: 63 TGAKVLSVQNLLTQGSFETTDVPTDMAINGGGFFQVNNTSAGQTAKYYTRAGQFLLDTEG 122 Query: 113 SLVSASG----KYPVLDMASVPIQIPQKDEIFNVGEK 145 +V+ G Y V D + +P I V Sbjct: 123 YMVNPQGYRLQGYNV-DANGDILAVPADLRITTVQTD 158 Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENSG------ISPNIPPTPL 186 + ++G G I+ G++ + + L +G R ++ I TP Sbjct: 672 QSLDIGTDGVITGTFSNGQLKTLGQVMLVDFANPEGLAREGDNLWSQTTKSGEPIENTPG 731 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G +++ G LE SN + EM +MI + + + + I ++ + E I Sbjct: 732 QGGTG-SIESGALEQSNVDLATEMVKMILYQRAYQANSKSISTTDQMLQELIN 783 >gi|74101658|gb|AAZ99748.1| FlgEL [Aeromonas hydrophila] Length = 397 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+IGL+ A+ Q LS +++N++N T GF++ + +F+ + G Q + Sbjct: 2 SFSIGLSGLRAVNQELSVISNNVANASTAGFKSSRAEFAAIYGG-----GQAGGVEMNNV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G TG LD A+ G +F L+ G TR G F+ + L +ASG Sbjct: 57 SQNFDRNGDVTRTGRGLDLAISGSGFFVLKDSNGQTSYTRAGMFQRDPNNYLTTASG 113 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 12/107 (11%) Query: 140 FNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 V G + G+ + + + + G ++ N+ + P Sbjct: 286 VKVDADGGVYATFTNGQSLLQGQVVMANFTNPNGLMQTNNTTWQQSFSSGQPVLGAPGTG 345 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 G ++ G E SN + E+ ++ + + + I +K Sbjct: 346 TMG-SLTAGAYESSNVDLTGELVSLMTSQRNYQANAKTISSADKMTQ 391 >gi|157165263|ref|YP_001467845.1| flagellar hook protein FlgE [Campylobacter concisus 13826] gi|112801725|gb|EAT99069.1| flagellar hook protein FlgE [Campylobacter concisus 13826] Length = 814 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 25/198 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ A + + +N++N +T GF+ + F++++ Sbjct: 1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTYGFKYNRANFADILSQTPRVATAPQGQLG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 Q + G S G+ ST + D AL+G+ +F + G TR+G F Sbjct: 61 GQNAMQIGLGTTINSTTRIFSQGTLTSTDKQTDLALQGNGFFVVSPDGGTTRYYTRNGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G+ V+ SG Y V DE + G IS ++ GL + + Sbjct: 121 VRDKAGNFVNNSG-YIVQGWTR-------DDETGTIDSTGPIS---NIVIKEGLTTPARA 169 Query: 167 QGFVRRENSGISPNIPPT 184 V+ + + S N Sbjct: 170 TTEVKIKGNLDSGNSIGQ 187 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 + E G I G+ +A + L S ++G + + Sbjct: 700 NDLKIDETGTIIGAFTNGQSFGLAQVALASFTNNEGLQSEGGNVFSQTANSGEAVIGAAG 759 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ LE SN + + +I + + F + + I +++ + ++ Sbjct: 760 TGDKG-TIAASKLEASNVDLSRALTDLIVIQRGFQANSKTITTSDEMLNTLLQ 811 >gi|27363705|ref|NP_759233.1| flagellar hook protein FlgE [Vibrio vulnificus CMCP6] gi|37679147|ref|NP_933756.1| flagellar hook protein FlgE [Vibrio vulnificus YJ016] gi|320157109|ref|YP_004189488.1| flagellar hook protein FlgE [Vibrio vulnificus MO6-24/O] gi|27359821|gb|AAO08760.1| Flagellar hook protein flgE [Vibrio vulnificus CMCP6] gi|37197889|dbj|BAC93727.1| flagellar hook protein FlgE [Vibrio vulnificus YJ016] gi|319932421|gb|ADV87285.1| flagellar hook protein FlgE [Vibrio vulnificus MO6-24/O] Length = 434 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N V + + Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTNAKTTPGGGVQANQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P LTR+G F ++ D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGTGFFAVAKDRMVPNQNELTRNGAFHLSKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 +Y V P+ IP + + + + + Sbjct: 123 EYLLGYQVDPLSGDVASYEPQPLNIPAEFGKPKQTSNVTVGVNLPASGALKDPQAFDFED 182 Query: 166 SQGFVRRENS 175 + R +S Sbjct: 183 PDTYNRSTSS 192 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 ++ E G + + + + L V QG ++ + + + E Sbjct: 321 TKVDIDENGSVYGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWNSTNNSGDKIWGESN 380 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G TV G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 381 KGSFGTVSSGALEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 432 >gi|121533754|ref|ZP_01665581.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] gi|121307745|gb|EAX48660.1| protein of unknown function DUF1078 domain protein [Thermosinus carboxydivorans Nor1] Length = 420 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 20/161 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + R+ + +N++N +T+GF+ +V F +++ I Sbjct: 1 MMRSLFAGVSGLRNHQTRMDVIGNNIANVNTIGFKASRVNFQDILSQTMQGASSGIGNQG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGR 105 V+ GSF TG + D +++G +F + SP G + TR G Sbjct: 61 GTNPIQIGLGVSIASIDTIFTDGSFQPTGKQTDLSIQGKGFF-VLSPDGGKTEVFTRAGN 119 Query: 106 FKVTDDG-SLVSASGKYPVL---DMASVPIQIPQKDEIFNV 142 F G +V +G V D P K ++ Sbjct: 120 FDFDRLGNFIVPGTGYKVVGWKADSNGNIDTDPSKRTTIDI 160 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 16/138 (11%) Query: 115 VSASGK---YPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMS 166 V+ G ++D P P E + G I + K + +A + L + + Sbjct: 283 VTQYGGDTTLQIVDQDGYP---PGSLEGVTIDPNGVIVGRFSNGKTRNLAQVALATFNNP 339 Query: 167 QGFVRRENSGIS-PNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 G + +S + + TP ++G + G LE SN + E MI + F Sbjct: 340 AGLTKIGDSLYAVSSNSGTPEIGVTGSGGRGKLNPGTLEMSNVDLAQEFSNMIITQRGFQ 399 Query: 222 SITTLIDENEKSMLEAIR 239 + + +I ++ + E Sbjct: 400 ANSKIISVTDEMLQELAN 417 >gi|77918787|ref|YP_356602.1| flagellar biosynthesis, hook protein [Pelobacter carbinolicus DSM 2380] gi|77544870|gb|ABA88432.1| flagellar biosynthesis, hook protein [Pelobacter carbinolicus DSM 2380] Length = 413 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 6/128 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---QKISFV 59 ++ G++ +S + +N++NT+TVGF++ + FS+++ + N Q Sbjct: 5 SALYSGISGMNTNGTAMSVIGNNIANTNTVGFKSSRTVFSDLLASSVNGSGGASQVGRGT 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 G+F +T ++ D A+EG+ F + E + TR G F +G L +A Sbjct: 65 GLSTVDNLFSQGTFETTESQTDLAIEGEGLFVVREEGAESLYYTRAGSFSFDGEGFLTNA 124 Query: 118 SGKYPVLD 125 G Y V Sbjct: 125 EG-YRVQG 131 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 9/114 (7%) Query: 135 QKDEIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTP---- 185 ++ +G + G+ IA + L G + S S P Sbjct: 297 GNLTNISIDNEGNVLAKYSNGEEIAKSRIVLAKFSSFSGLRKEGASLFSATGESGPPRIG 356 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + LE S + E +MI + F + + +I ++ + E I Sbjct: 357 VPGTELGNIFTNALEQSTVDLAAEFVKMITTQRGFQANSKVITTTDEMLSELIN 410 >gi|83647173|ref|YP_435608.1| flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] gi|83635216|gb|ABC31183.1| Flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] Length = 651 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--FVASG 62 FNI L A L +N++N T GF+ + +F ++ + V Sbjct: 3 FNIALTGIRAASVDLEVTGNNIANASTTGFKRSRAEFGDLYANSFLSLGTNPVGDGVRVQ 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 K G+ T LD A+ G+ +F L++ G +R G F + +G++V++SG + Sbjct: 63 KVRQEFAQGNLSFTENGLDLAINGEGFFILDTNNGDRRYSRAGAFGIDKEGNVVNSSGMH 122 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 KV+ + L + + QG E + + P+ G ++ LEDSN + Sbjct: 558 KVLGQVALANFNDIQGLAPVGETTWVETFNSGNPVIGSPGTASLGAIRSSSLEDSNVDLS 617 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ +I + + + I+ I Sbjct: 618 EQLVGLIIAQRNYQANAKTIETANAITQTIIN 649 >gi|330967091|gb|EGH67351.1| flagellar hook protein FlgE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 586 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ TVGF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTVGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A+ + + + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 62 AATQQNFNQGD--SMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 +VG G + K I + L S +QG R ++ + + ++ G Sbjct: 473 SSLSVGRDGILRAGFTNGMNKSIGQVILASFANAQGLQARSDTRWTESAESGVADYEVPG 532 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|254519414|ref|ZP_05131470.1| flagellar hook protein [Clostridium sp. 7_2_43FAA] gi|226913163|gb|EEH98364.1| flagellar hook protein [Clostridium sp. 7_2_43FAA] Length = 885 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 41/165 (24%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDI 52 M S G++ + +L + +N+SN T F++ + +FS+++ N Sbjct: 7 MLRSMYSGISGMKVNQTKLDVIGNNISNVGTTSFKSSRARFSDMLSQNVSDAMAPSNNQG 66 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALE--------------- 93 S V G + S G TG +LD A++GD +F + Sbjct: 67 GVNASQVGLGVQLASIDSVMTQGMMQPTGRQLDVAIDGDGFFMVSKGPAIYDGTLEVNHR 126 Query: 94 -------------SPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 S I+ +RDG F + + G+L++ G + V+ Sbjct: 127 AGAHNITSQSLSNSGSEIMYSRDGSFILDEQGNLLTGDG-FRVMG 170 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 24/160 (15%) Query: 103 DGRFK-VTDDGSLVSASGKYPVLDMASVPIQIPQKD-----EIFNVGEKGEIS---QKGK 153 DG V L S G+ L + ++IP D + + + + G I+ + G+ Sbjct: 724 DGSINFVDATKDLKSYDGELKTLKIPDK-VRIPGTDIELRVKTYTIDKNGVINGVLEDGR 782 Query: 154 V--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK------------RGFL 199 V + + + S +G + + S ++ SGV +G L Sbjct: 783 VAALGQLAMASFKNPEGLTKLGGNLYSSSVNSGDAIIKSGVGTLNDDNSNGYGDNLQGML 842 Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E SN + + MI ++ F + +I ++ + + I Sbjct: 843 EMSNVDLSEQFTDMIVSSRAFQAAGKMITTGDEILQDIIN 882 >gi|71906391|ref|YP_283978.1| flagellar hook protein FlgE [Dechloromonas aromatica RCB] gi|71846012|gb|AAZ45508.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Dechloromonas aromatica RCB] Length = 442 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISFVAS 61 +F GL+ + L ++N++N TVGF++ F++V A Q V++ Sbjct: 2 AFQQGLSGLNTSSKALDVTSNNIANASTVGFKSASTHFADVYAASLAGGGASQVGIGVSA 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 G+ +T LD AL G+ +F + + TR+G+F + G +V+ + Sbjct: 62 SAIAQQFTQGNITTTSNSLDIALNGNGFFRMTQDGAVRYTRNGQFHLDSTGYIVNDN 118 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 +G+ G I G+ +A + L + G + N+ TP Sbjct: 329 SSLTIGDNGVIQGVYSNGQTRNMAQIVLANFQNPNGLMSIGNNDYIETADSGQSMIGTPN 388 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV ++ G +EDSN + E+ MI + + + I ++ M + Sbjct: 389 TGTFGV-LQSGAVEDSNVDLTAELVNMIVQQRNYQANAQSIKTQDQIMQTLVN 440 >gi|330983289|gb|EGH81392.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 183 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVASG 62 NIGL+ A + L +N++N T GF++ + +F++ S V + Sbjct: 1 NIGLSGLYAANKSLDVTGNNIANVATTGFKSSRAEFADQYAQSIRGTSGNTNVGSGVRTA 60 Query: 63 KEYLSKEVGSFIS-TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 GS + T LD A+ GD +F + + + TR G F +G +V++S Sbjct: 61 AVSQQFSQGSLTTGTANSLDLAINGDGFFMMSNNGEKLYTRAGAFHTDKEGYVVNSS 117 >gi|298345998|ref|YP_003718685.1| flagellar basal body and hook protein [Mobiluncus curtisii ATCC 43063] gi|304390244|ref|ZP_07372198.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236059|gb|ADI67191.1| flagellar basal body and hook protein [Mobiluncus curtisii ATCC 43063] gi|304326726|gb|EFL93970.1| flagellar hook protein FlgE [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 484 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 15/198 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---------IKND 51 M S G++ + L ++N++N +T GF++ +F + + Sbjct: 1 MLRSLFTGISGLSVHQTMLDVTSNNIANVNTTGFKSASTRFEDTFSQLVRSGAAPRLNER 60 Query: 52 IDQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRF 106 + V G + S G+ TG LD + GD ++ L G + TR+G F Sbjct: 61 GGMNPAQVGLGVKLQSITQNFTGGAAQMTGRNLDTMINGDGFYVLRKTNGSSVYTRNGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 + G +V+A G + M I N+ + +G+ + +Y ++ Sbjct: 121 GLDAQGQVVAADGSFVQGWMGDKDGTINASGTPGNITLPLTKTVEGRPTTKV-IYGGNIP 179 Query: 167 QGFVRRENSGISPNIPPT 184 + + +G + Sbjct: 180 ADQIYMDPTGSKTSPDNA 197 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNI---PPTPLEDLSG 191 ++V G I + + +A + + S G + +S P E +G Sbjct: 372 YSVEADGTIRGTFSNGDNRALARIAVASFANPLGLEKAGSSYFVETGNSGQPQIGEAGTG 431 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +E SN + E +I + F + + +I +++ + E + Sbjct: 432 QRGAMTGGAIEMSNVDLAAEFTNLILSQRGFQANSRVITTSDEILQELVN 481 >gi|238752866|ref|ZP_04614331.1| Lateral flagellar hook protein (FlgE-like) [Yersinia rohdei ATCC 43380] gi|238708905|gb|EEQ01158.1| Lateral flagellar hook protein (FlgE-like) [Yersinia rohdei ATCC 43380] Length = 411 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A+ ++LST+++N++N+ T GF+ + +F+ + Q + SG Sbjct: 2 SFSIANTGLSAVTEQLSTISNNIANSATKGFKASRTEFASMYAQ-----SQPLGVAVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + GS TG +D A+ G+ +F +++ G TR G F G LV+ SG Sbjct: 57 SQSINKDGSIDRTGNAMDLAIAGNGFFVVKNSNGDEAYTRAGMFTSDKSGMLVNGSGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YPV ++ I ++ G Sbjct: 117 QGYPVDAAGNIQTGIISDLKVSTAG 141 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 10/104 (9%) Query: 141 NVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDLSGV 192 + G + G+ + + L + G + S S + E SG+ Sbjct: 301 RIENDGSVYATFSNGERMLQGRLVLANFANPNGLAAQNGTTWSATSKSGAALLGEAGSGM 360 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 +++ G LE SN + E+ ++ + + + T +I N+ M Sbjct: 361 LGSIEAGALEASNVDLTAELVGLMTAQRNYQANTKIISTNDSMM 404 >gi|258592496|emb|CBE68805.1| putative Flagellar hook protein flgE [NC10 bacterium 'Dutch sediment'] Length = 412 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 13/149 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 ++F+ + A + L + +N++N +T G++ + +FSE++ Sbjct: 1 MSTFSTAITGLKAYQTDLGVIGNNIANANTTGYKASRAQFSELLVQTIEGATPPSDSTGG 60 Query: 54 ----QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 Q + V G + G+ TG D A++G+ ++ L + I TR G F++ Sbjct: 61 IDPMQIGAGVIVGGILNIQTQGAIEPTGRSSDLAIQGEGFYVLSNGESQIYTRVGSFELD 120 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDE 138 +G+LV A V + I IP Sbjct: 121 ANGNLVDAGTGLKVQGIDGD-IHIPLGSN 148 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGE---ISQKG--KVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLE 187 P F V G I G + T+ L S G +R N + Sbjct: 294 PGSLTSFTVSNDGMVNGIYSNGLVTEMDTLKLASFSNPAGLLRLANGQFAETPNSGVAQY 353 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++G T+ G LE SN + E+ +I + + + +I + + Sbjct: 354 GVAGTGGRGTIVAGALEQSNVDLGTELVNLIIAQRGYEANAQVISVANQIQQTTLN 409 >gi|149188066|ref|ZP_01866361.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148838054|gb|EDL54996.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 432 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N K Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTPGGGAQPSK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS IST +D + G +FA+ P+ LTR+G F + D +V+++ Sbjct: 63 IAQQFHEGSSISTNNPMDLRISGTGFFAVSKDRLVPQQNELTRNGAFHLNKDSYMVTSND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 ++ V+ PI IP + EI + L+ Sbjct: 123 EFLLGYEVNKDTNEVVSYEPRPINIPPEFGKPKQTANIEIGVNLPANGDLKDPALFDFTD 182 Query: 166 SQGFVRRENS 175 + + R +S Sbjct: 183 PETYNRSTSS 192 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LE 187 + E+G + G+ + + + V QG ++ + Sbjct: 319 TKVDFDEQGNVLGTYSNGENVTLGRVAMVRVANEQGLDKKGGTQWDSTTASGAKIWGESN 378 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S T+ G LE SN + E+ +I + F + + +D + + ++ Sbjct: 379 KGSFGTINNGTLEQSNIDMTQELVDLISAQRNFQANSRALDVHNQLQQNILQ 430 >gi|260774938|ref|ZP_05883839.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] gi|260609193|gb|EEX35351.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] Length = 434 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 20/190 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V + V + K Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFTHAKTTPGQGVQAAK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ +P LTR+G F + D + +A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLAPTTNELTRNGAFHLNKDNYMTTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 ++ VL PI IP++ ++ + L+ Sbjct: 123 EFLLGYQVNKDTGDVLSYEPSPINIPKEFGKPKQTSNIDVGVNLPAGGELKDPALFDFSD 182 Query: 166 SQGFVRRENS 175 + + R +S Sbjct: 183 PETYNRSTSS 192 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSG-----ISPNIPPTPLE 187 + E G + G+ ++ + L V QG ++ + S N Sbjct: 321 TKVDFDENGSVLGTYSNGENIILGRVALVRVPNEQGLDKKGGTQWDSTQFSGNKIWGESN 380 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S T+ G LE +N + E+ +I + F + + ++ + ++ ++ Sbjct: 381 KGSFGTISSGVLEQANIDMTQELVDLISAQRNFQANSRSLEVHNQTQQNILQ 432 >gi|160901599|ref|YP_001567180.1| hypothetical protein Pmob_0108 [Petrotoga mobilis SJ95] gi|160359243|gb|ABX30857.1| protein of unknown function DUF1078 domain protein [Petrotoga mobilis SJ95] Length = 702 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 20/169 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G+ + +L VA+N++N +TVG++ + F + Sbjct: 1 MLRSMYSGITGLRNFQDQLDIVANNIANVNTVGYKGSRATFQTTLFQTLSAGNAPQNQLG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G + S GS +STG D ++G+ +F L G TR G F Sbjct: 61 GTNPMQIGLGSQLASIDKLMTQGSPMSTGKATDLMIQGEGFFILSDGIGQYYTRAGNFTR 120 Query: 109 TDDGSLVSASGKYPVLD-------MASVPIQIPQKDEIFNVGEKGEISQ 150 +G V + + + I + G++ Sbjct: 121 DYNGFFVDPASGMKLQGWTAKIDQEGNRTIDTNDPIGDIQISS-GQVMA 168 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP-----TPLE 187 E F + G+I + + + L + + +G NS + + Sbjct: 588 ESFAINTNGQIIGSFTNGLTAPLGQVALATFNNPEGLSATGNSMYAMSSNSGLPQIGVSG 647 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E MI + F + + I + + E + Sbjct: 648 VGGRGSINPGALEMSNVDLAEEFTNMIIAQRGFQANSRSITTADAILNELVN 699 >gi|323203175|gb|EFZ88205.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 179 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 17/187 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V + + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVDGLSLATRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + G T LD AL+ D W +++ G TR+G +V G L + G Sbjct: 59 ASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVR 171 +PV+ PI +P+ E + G IS + + L + ++ V+ Sbjct: 118 -HPVIGEGG-PITVPEGSE-ITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQ 172 Query: 172 RENSGIS 178 R + G+ Sbjct: 173 RSDDGLF 179 >gi|330892783|gb|EGH25444.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 280 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 CLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 >gi|300312833|ref|YP_003776925.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] gi|300075618|gb|ADJ65017.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 11/141 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ + L + +N++N TVGF+ +V+F++ N + Sbjct: 2 SFQQGLSGLHGASKHLDVIGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVTV 61 Query: 64 EYLS--KEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 +S G+ +T LD A+ GD +F + + + R+G+F++ DG L++ S Sbjct: 62 ANVSQAFTQGNIATTNNALDVAINGDGFFRMAASLTDQSPRYGRNGQFQLNKDGYLINPS 121 Query: 119 ------GKYPVLDMASVPIQI 133 YP P+ + Sbjct: 122 MNGAYLTGYPAGTNGGDPVPL 142 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 14/117 (11%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGI------SPNIP 182 P F++G+ G I +Q+ +V+ + L + G N+ + Sbjct: 303 PGTLSSFSIGKDGSIIGAYSNQQTRVMGQIVLVNFANPHGLQPIGNNLYQASEAAGSALV 362 Query: 183 PTPLEDLSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 TP G +G +E SN + E+ MI + + + + I + + + Sbjct: 363 GTPTTGAFGA--LQGRAVEQSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQTLV 417 >gi|329901230|ref|ZP_08272755.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] gi|327549162|gb|EGF33754.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] Length = 407 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A + L +N++N+ TVGF++ + +F++V + + + Sbjct: 2 GFQQGLSGLNAASKSLEVTGNNVANSSTVGFKSAQAQFADVYASSLTGGGASQVGIGTSV 61 Query: 64 EYL--SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+ ++ LD A+ G +F L + I +R+G+F++ +G +V+++G + Sbjct: 62 ATVAQQFTQGNVTASNNPLDLAINGGGFFRLSTGGAITYSRNGQFQLDKNGGIVNSNGAH 121 Score = 65.4 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 F G G I+ + + + L + G N+ + TP Sbjct: 296 FATGADGVITGRYTNGKSATLGQVVLSNFTNPNGLQNLGNNVWSETAASGGPLVGTPNSG 355 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV ++ +EDSN + E+ MI + + + I ++ + + Sbjct: 356 NLGV-LQSSAVEDSNVDLTAELVNMITAQRFYQANAQTIKTQDQVLQTLVN 405 >gi|94986792|ref|YP_594725.1| flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] gi|94731041|emb|CAJ54404.1| Flagellar hook protein FlgE [Lawsonia intracellularis PHE/MN1-00] Length = 502 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 17/173 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-------IKNDID 53 M S IG L TV++N++N +T+G++ +V F ++ + Sbjct: 1 MMGSLFIGATGMKTHSTGLGTVSNNIANANTIGYKQQQVVFQDLFSQDLAIGSTGSQGPN 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 Q G G+F + D A+ G +F + + TR G F+ T DG Sbjct: 61 QAGMGAQVGSVRTIFTQGAFEPGNSVTDLAIGGKGFFQVTLEDKVHYTRAGNFRFTQDGF 120 Query: 114 LVSASGKYPVLDMASV----------PIQIPQKDEIFNVGEKGEISQKGKVIA 156 L SG + S PIQ+ D + V+ Sbjct: 121 LNDPSGFTLMGSRISNNPNIKKETLEPIQLDFNDPTVAKSPAKTSTALNAVVN 173 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 15/118 (12%) Query: 134 PQKDEI-FNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 PQ D + + +G++ +V+ + L G R N+ S + E Sbjct: 383 PQGDLVDVTITSEGKLQGKYSNSQVVDFYNIPLARFTSEDGLRREGNNHYSATLDSGGPE 442 Query: 188 -------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + ++V + LE SN + EM MI + + F + + + + +A+ Sbjct: 443 FGLPGTSNYGKLSVNQ--LETSNVDMSREMVNMIIIQRGFQMNSKSVTTADTMLQKAL 498 >gi|323975930|gb|EGB71024.1| fagellar hook-basal body protein [Escherichia coli TW10509] Length = 400 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F + +S I TR G F+ DG +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKDGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDSGT 126 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +++ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNSANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|327254554|gb|EGE66170.1| hypothetical protein ECSTEC7V_0308 [Escherichia coli STEC_7v] Length = 400 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F + +S I TR G F+ DG +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKDGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDSGT 126 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAADGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNDDGLQAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLTSGALESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|260768782|ref|ZP_05877716.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|260616812|gb|EEX41997.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] Length = 397 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GF+ + +F V + Q G Sbjct: 2 SFNIALSGLNASNQELNTISNNIANVSTTGFKESRTEFGSVY-----NGQQAGGVQVMGI 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG--- 119 + GS +TG LD AL G +F ++ G + TR G F + G+++S +G Sbjct: 57 SQNFEATGSMSATGRSLDMALTGSGFFVVQDKNGQLSYTRSGVFGLDSQGNVISNTGGSL 116 Query: 120 -KYPVLDMAS 128 Y V + Sbjct: 117 QGYTVDGNNN 126 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 12/115 (10%) Query: 138 EIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 V G + G+ + + L + + Q ++ N+ G + P Sbjct: 284 TDIRVEANGMVYATYSNGQSLLQGQLVLANFNAPQELMQTSNTAWTQTYGSGQPVYGIPG 343 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G + G LE SN + E+ ++ + + + T I ++ M+ + Sbjct: 344 SGQFG-ELASGVLEGSNVDLTSELVHLMSAQRNYQANTKTITTADQLMMSLFNAV 397 >gi|82702453|ref|YP_412019.1| flagellar hook protein FlgE [Nitrosospira multiformis ATCC 25196] gi|82410518|gb|ABB74627.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 406 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--DIDQKISFVAS 61 SF GL+ A + L + +N++NT+TVGF+ + +F+++ + Q V Sbjct: 2 SFQQGLSGLNAASKNLDVIGNNVANTNTVGFKQSQAQFADMFANSLSGGGGTQAGIGVKL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 GS + D A+ G ++ L I +R+G+F DG +V++SG Sbjct: 62 AGIAQQFSQGSITVSNNPFDIAISGAGFYRLSDQGTISYSRNGQFHPDKDGYIVNSSG 119 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 F++GE G +S GK + + L + QG N+ + P Sbjct: 295 FSIGEDGIVSGSYSNGKFLSMGQIALANFANPQGLQAVGNNTWKESAASGAALVAAPATG 354 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV ++ G +EDSN E+ MI + + + I ++ + + Sbjct: 355 GLGV-LQAGAVEDSNVELTSELVNMITAQRVYQANAQTIKTQDQILQTVVN 404 >gi|50954410|ref|YP_061698.1| flagellar hook protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950892|gb|AAT88593.1| flagellar hook protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 390 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 13/155 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S + G+ A + L A+N++N +T GF+ V+F + + + + Sbjct: 1 MLRSLDSGVFGLQAQQTMLDVTANNIANVNTAGFKASSVQFEDALSQVTRTASAPTDVIG 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 G+ +TG + L GD +F + S TR G F Sbjct: 61 GTTPAAVGLGVRAAGIDTDWTQGATQTTGKATNLTLNGDGFFVIRSAGQTQYTRAGNFTT 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 D G+LV+ G V + + + Sbjct: 121 DDSGTLVTPDGA-RVQGWGAAGGVVNSGVAPSTIT 154 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 8/110 (7%) Query: 138 EIFNVGEKGEI----SQKGKV-IATMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDL 189 + F + G I S ++ I + + + GF + +S + P D Sbjct: 277 QSFTFDQDGTIEGSFSNGARLAIGRVAVATFSNPSGFQKAGSSAFTATADSGIPQVAADS 336 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G E SN + E +I + F + +I +++ + E + Sbjct: 337 GTGTITVGAYEGSNVDLGREFTNLIVSQRAFQASARVITTSDEILQELTQ 386 >gi|94968673|ref|YP_590721.1| flagellar basal body FlaE [Candidatus Koribacter versatilis Ellin345] gi|94550723|gb|ABF40647.1| flagellar basal body FlaE [Candidatus Koribacter versatilis Ellin345] Length = 409 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-----ISFV 59 F+I L+ A L+T+A+N++N +T+G++ + F ++ + Sbjct: 4 FSIPLSGLTASSTALATIANNLANQNTIGYKQTRALFRDLFYQQIGQTGSGDPIQVGAGT 63 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G + GS TG D A+ GD +F + I TR G FKV DG+L + G Sbjct: 64 MIGTIDTNFTDGSVSPTGVPTDVAIMGDGFFVAQQNGNDIYTRAGNFKVGADGTLRTQDG 123 Query: 120 KYPVL 124 + Sbjct: 124 AVVLG 128 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS-- 190 + FN+G G I + K +I + + S QG + + + + Sbjct: 295 QNFNIGADGTIEGTFSNGKTSIIGQIAIASFPNVQGLRKVGQNAYVGTLASGQAALGAPG 354 Query: 191 ---GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E +I + + + +I ++ + I Sbjct: 355 SGGRGTLGGGALELSNVDMATEFSNLIVAQRGYQANAKVITTFDEITQDTIN 406 >gi|206896555|ref|YP_002246691.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM 5265] gi|206739172|gb|ACI18250.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM 5265] Length = 519 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 12/144 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M SF G++ + R+ +++N++N +T ++ + FS+VV Sbjct: 1 MLRSFFNGISGLKVHQIRIDVISNNIANVNTTAYKAARATFSDVVALTLKGARAPYGGRG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 S V G + G +T D A++GD +F + + TRDG F + Sbjct: 61 GTNPSQVGLGVGLATIDNIMTQGPTNNTNRASDLAIQGDGFFVVSDGQRNWFTRDGAFDI 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQ 132 G L+ S V + +P Q Sbjct: 121 DLTGRLIQLSTGLKVQGWSMIPTQ 144 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP----PTPLEDLSGVTVKRGFL 199 + G+I + +A + L + G R N+ G + RG L Sbjct: 421 DNGQI----RELAQIALANFQNPAGLSREGNNLWQNTANSGFRGYVEAGDLGSLIIRGAL 476 Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E SN + E +I + F + T +I +++ + I Sbjct: 477 ESSNVDLAEEFTNLIITQRGFQASTRVITTSDEVTQDII 515 >gi|331017025|gb|EGH97081.1| flagellar hook protein FlgE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 586 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A+ + + + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 62 AATQQNFNQGD--SMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSD 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 +VG G + K I + L S QG R ++ + + ++ G Sbjct: 473 SSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESAESGVADYEVPG 532 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|1184296|gb|AAA87351.1| flagellar hook protein [Borrelia burgdorferi] Length = 442 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ + + V +N++N +T+GF+ +V F +++ + Sbjct: 1 MMRSLYSGVSGLQNHQTIMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 V G S G+F ST D + G+ +F L+ + + TR G F V Sbjct: 61 GTNPKQVGLGMNVASIDTIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFYV 120 Query: 109 TDDGSLVSASGKYPVLD 125 D LV+ + + Sbjct: 121 DSDRHLVNPANGMRIQG 137 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 E + + + G I G + + + L S G + ++ + Sbjct: 328 ENYEIDQNGVIVGIYSNGIRRDLGKIALASFMNPGGLAKSGDTNFVETSNSGQVRIGETG 387 Query: 189 LSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G+ ++ G LE +N + + MI + F + I +++ + E +R Sbjct: 388 LAGLGDIRSGVLEMANVDLAEQFTDMIVTQRGFQANAKTITTSDQLLQELVR 439 >gi|223038348|ref|ZP_03608642.1| flagellar hook protein FlgE [Campylobacter rectus RM3267] gi|222880205|gb|EEF15292.1| flagellar hook protein FlgE [Campylobacter rectus RM3267] Length = 784 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 14/134 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------- 50 M S G+ A + + +N++N +TVGF+ + F +++ Sbjct: 1 MMRSLWAGVTGLQAHQIAMDVEGNNIANVNTVGFKYSRANFDDLIYQTSRIATGPQNRHG 60 Query: 51 --DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 + Q V + + GS +T + D AL+GD +F + G TR+G F Sbjct: 61 GVNSMQVGLGVQTNSTTRIFKQGSLQTTDKQTDIALQGDGFFMVSPDGGKTTYYTRNGDF 120 Query: 107 KVTDDGSLVSASGK 120 G+ V G Sbjct: 121 SRDSVGNFVDNGGN 134 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPT-----PLEDL 189 + + G + G+ +A +G+ ++G + S + Sbjct: 673 IRIDQSGTLVGSFTNGRSLGLAQVGVAKFSNNEGLSSEGGNLFSRTANSGDPVIGAAQTA 732 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + + Q+I + + F + + I +++ + ++ Sbjct: 733 GRGKISSSSLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDEMLNTLLQ 782 >gi|313673416|ref|YP_004051527.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940172|gb|ADR19364.1| fagellar hook-basal body protein [Calditerrivibrio nitroreducens DSM 19672] Length = 822 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ ++ + + +N+SN +TVG++ ++ F +++ N Sbjct: 1 MLRSLYSAVSGLSQHQKAMDVLGNNVSNVNTVGYKASRLTFKDLMSQTVSIGKAPSGNIG 60 Query: 53 DQKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 + G S + G+F +TG D A++G +F + + TR G F Sbjct: 61 GINPLQIGLGTNVASVDNIFLQGTFQTTGVTTDLAIDGKGFFIVRGEQQTERYYTRAGNF 120 Query: 107 KVTDDGSLVSASG 119 G LV+ G Sbjct: 121 SFDRQGYLVNPEG 133 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN-----IPPTP 185 I I EI GEI K++ + + +G R +S S Sbjct: 710 ISINDVGEIVGSYSNGEI----KILGQIAVAIFTNQEGLARVGSSLFSETPNSGLAAIGV 765 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G +E+SN + E MI + + + + + +I +++ + E + Sbjct: 766 AGAGGRGVIQSGAVENSNVDIAQEFVTMITVQRGYQTNSRVITTSDEMLQELLN 819 >gi|167585194|ref|ZP_02377582.1| flagellar hook protein FlgE [Burkholderia ubonensis Bu] Length = 269 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF++ +F+++ ++ ++ +I Sbjct: 2 GYQQGLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTRI 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 S G+ +T LD A+ G+ +F + + + +RDG F+ +G +V + G+ Sbjct: 62 SSVQQSFGQGTINTTNNALDVAINGNGFFQMSNNGVVTYSRDGTFQRDKNGFIVDSQGRN 121 Query: 122 PV------LDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYNATAGGVINTAATVPLQAPTANLAPTATTRITGQF 160 >gi|331671804|ref|ZP_08372600.1| LfgE [Escherichia coli TA280] gi|331070793|gb|EGI42152.1| LfgE [Escherichia coli TA280] Length = 400 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F + +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGDYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDAGT 126 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAADGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLTSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|291280053|ref|YP_003496888.1| flagellar basal-body rod protein [Deferribacter desulfuricans SSM1] gi|290754755|dbj|BAI81132.1| flagellar basal-body rod protein [Deferribacter desulfuricans SSM1] Length = 205 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 92/243 (37%), Gaps = 39/243 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+A A R+ A+N++N +T GF+ V + + + + V Sbjct: 1 MIKGLYNSLSALNAAITRVDNSANNIANINTPGFKR--------VVSYNSALSKNGVNVY 52 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG 119 S K+ G I TG LD A+ G +F L + G + TR G F + + G++VS G Sbjct: 53 SIKDL--DTQGYLIYTGRNLDLAINGKGFFKLTNNQGGEVFTRFGHFSMDEKGNIVSPRG 110 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + +L ++ V G I + + + L+ S G ENS Sbjct: 111 E--ILFSTG-------REGKIEVSPDGSIYIDKEPLGKIELF---NSSGNKVPENSY--- 155 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G+LE SN + E+ MI F + ++ + I Sbjct: 156 -------------EILPGYLEASNVDLAKEIVDMIVTKNYFEANLKTTKVIDEMLGNIID 202 Query: 240 NIA 242 N A Sbjct: 203 NFA 205 >gi|317152826|ref|YP_004120874.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316943077|gb|ADU62128.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 515 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 6/146 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKISFVA 60 S G++ A Q S V++N++N+ T +++ + F +V + + Q + V Sbjct: 6 SMYTGISGLKAQSQATSVVSNNLANSTTTAYKSSSITFEDVFYSTVYAGGSVGQVGNGVT 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSAS 118 GS+ ST + D A+ G+ ++ + P TR G F +G L A Sbjct: 66 VASVNTDYSQGSYESTNSATDVAINGNGFYVVIDPDTGNTYYTRAGNFTFNTEGYLEDAH 125 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGE 144 G V A I + + Sbjct: 126 GN-KVQGWAMNDGSIEGTLTDIVIDQ 150 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 12/116 (10%) Query: 134 PQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------ 182 P + E G +S + + + T+ L + +QG + ++ S Sbjct: 397 PGVLINVAIDENGVLSGEYTNGQTQELYTIALANFTNTQGLSSQGSNLYSATTESGQAFI 456 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 TP G T+ LE SN ++ E+ ++I L + + +I + + AI Sbjct: 457 GTPGSAGFG-TIASNSLEQSNVDTATELTKLIILQAAYQANAKVITTADTLLSAAI 511 >gi|254251191|ref|ZP_04944509.1| flagellar hook protein FlgE [Burkholderia dolosa AUO158] gi|124893800|gb|EAY67680.1| flagellar hook protein FlgE [Burkholderia dolosa AUO158] Length = 413 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 4/165 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVAS- 61 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I + Sbjct: 2 GYQQGLSGLAGASSALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + I TRDG F+ +G +V++ G Sbjct: 62 ASVQQQFAQGTINTTNSSLDVAINGNGFFQMSNNGVITYTRDGTFQRDKNGYIVNSQGMN 121 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKVIATMGLYSVD 164 + A I + I + K+ L S D Sbjct: 122 LMGYAAGANGVINTAQTVPLQAPTTNIAPTATTKITGQFNLNSQD 166 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 + +G G+++ V+ + + + + G V + + P G Sbjct: 301 TTYTIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVAIGGNQFVETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|315180485|gb|ADT87399.1| flagellar hook protein E [Vibrio furnissii NCTC 11218] Length = 397 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GF+ + +F V + Q G Sbjct: 2 SFNIALSGLNASNQELNTISNNIANVSTTGFKESRTEFGSVY-----NGQQAGGVQVMGI 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG--- 119 + GS +TG LD AL G +F ++ G + TR G F + G+++S +G Sbjct: 57 SQNFEATGSMSATGRSLDMALTGSGFFVVQDKNGQLSYTRSGVFGLDSQGNVISNTGGSL 116 Query: 120 -KYPVLDMAS 128 Y V + Sbjct: 117 QGYTVDGNNN 126 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 12/115 (10%) Query: 138 EIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 V G + G+ + + L + + Q ++ N+ G + P Sbjct: 284 TDIRVEANGMVYATYSNGQSLLQGQLVLANFNAPQELMQTSNTAWTQTYGSGQPVYGIPG 343 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G + G LE SN + E+ ++ + + + T I ++ M+ + Sbjct: 344 SGQFG-ELASGVLEGSNVDLTSELVHLMSAQRNYQANTKTITTADQLMMSLFNAV 397 >gi|300936126|ref|ZP_07151065.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] gi|300458704|gb|EFK22197.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] Length = 400 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSMAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAADGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|315123658|ref|YP_004065662.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017380|gb|ADT65473.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 544 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKIS 57 SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGY 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 GSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVD 120 Query: 117 ASGKYPVLDMA 127 + G + + M Sbjct: 121 SYGNFVLGTMN 131 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG ++ + Sbjct: 428 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSGDASFIMKD 487 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 488 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541 >gi|284925346|gb|ADC27698.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 544 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKIS 57 SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGY 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 GSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVD 120 Query: 117 ASGKYPVLDMA 127 + G + + M Sbjct: 121 SYGNFVLGTMN 131 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 428 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 487 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 488 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541 >gi|300114799|ref|YP_003761374.1| fagellar hook-basal body protein [Nitrosococcus watsonii C-113] gi|299540736|gb|ADJ29053.1| fagellar hook-basal body protein [Nitrosococcus watsonii C-113] Length = 425 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVAS 61 +FN L+ A L A N++N T GF+ + +F+++ V + S V Sbjct: 2 AFNTSLSGLNAASSDLDVTAHNIANASTTGFKRSRSEFADIFAVSSFGRSQTAVGSGVLL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 K E G+ T LD A+ G FAL + + ++ +R G F V +G +V++S Sbjct: 62 NKTAQQFEQGNLDFTQNSLDLAISGQGLFALSPSLNDKDLVYSRAGAFSVDKEGYVVNSS 121 Query: 119 GKY 121 G+Y Sbjct: 122 GQY 124 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 10/108 (9%) Query: 142 VGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV--- 192 + + G I + + L QG + N+ + + L +GV Sbjct: 316 ISKTGVIQANYSNGQNSTLGKVALAQFPNEQGLRQLGNNAWGETVSSGSALAGEAGVGSF 375 Query: 193 -TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ G LE SN + E+ +I + F + I+ I Sbjct: 376 GTIQTGALESSNVDLTAELVHLITAQRNFQANAKAIETASTITDTIIN 423 >gi|115353118|ref|YP_774957.1| flagellar hook protein FlgE [Burkholderia ambifaria AMMD] gi|115283106|gb|ABI88623.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria AMMD] Length = 413 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I A Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTAL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 62 SSVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYLADKNGVVNTAQTVPLQAPTTNISPTATTKITGQF 160 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ V+ + + + + G V + P G Sbjct: 301 TTFSIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVNLGGNQYAETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|213026919|ref|ZP_03341366.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 149 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 18/154 (11%) Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK---- 153 TRDG F+V +G LV+A G I IP +G G +S + Sbjct: 1 SAYTRDGSFQVDQNGQLVTAGGFQV-----QPAITIPANALSITIGRDGVVSVTQQGQAA 55 Query: 154 --VIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 + + L + G + E TP + +G+ + +G++E SN N Sbjct: 56 PVQVGQLNLTTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGL-LYQGYVETSNVN 114 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ MI + + + + + ++ + + + Sbjct: 115 VAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQ 148 >gi|315637837|ref|ZP_07893027.1| flagellar hook protein [Campylobacter upsaliensis JV21] gi|315482078|gb|EFU72692.1| flagellar hook protein [Campylobacter upsaliensis JV21] Length = 545 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +F G++ + A+N++N +T GF+ +F ++ + + Sbjct: 1 MMGAFYNGISGVKTNSFGIDISANNIANVNTTGFKYSNAEFKDIFYSTITSQSTNPAQGG 60 Query: 61 SGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 G S E GS +++ E D AL+G +F + G+ TR+G FK +G LV Sbjct: 61 YGSTSASSKLVFEQGSPVASEGEFDVALQGKGFFGVLGADGMPYYTRNGAFKRDANGHLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 12/112 (10%) Query: 140 FNVGEKGEISQ---KGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTP-------LE 187 + +G+ GE+ G+ ++ + LY+ QG + ++ + E Sbjct: 431 YRIGDGGELIAQFSNGQTAIVGKIALYNFINEQGLMAMGDNIFAATGNSGEASFIMKDGE 490 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 491 IVNTAKFKGGFLEQSNVDLSMELSNLIVTQRAFDASSKSITTSDQMIQKAIN 542 >gi|207092742|ref|ZP_03240529.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1] Length = 646 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 >gi|330875984|gb|EGH10133.1| flagellar hook protein FlgE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 586 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A+ + + + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 62 AATQQNFNQGD--SMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 +VG G + K I + L S +QG R ++ + + ++ G Sbjct: 473 SSLSVGRDGILLAGFTNGMNKSIGQVILASFANAQGLQARSDTRWTESAESGVADYEVPG 532 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|298530010|ref|ZP_07017412.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509384|gb|EFI33288.1| fagellar hook-basal body protein [Desulfonatronospira thiodismutans ASO3-1] Length = 755 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S G++ +++ T+ +N+SN TVGF+ ++ F + + N Sbjct: 5 SSMYTGVSGLKGHGEKMGTIGNNISNVSTVGFKGSRMHFEDFMSQDINTGAGVGQVGRGV 64 Query: 63 KEYL---SKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 GS ST D A+ GD +F + + TR G F+ ++G LV Sbjct: 65 GVGAVMNDFSQGSLESTNEATDVAIGGDGFFQVSARGTDENLYTRAGNFRFDEEGYLVDP 124 Query: 118 SGK 120 + Sbjct: 125 NNN 127 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPL-EDLSG 191 + + G ++ G+V+ + L QG + + S P L+G Sbjct: 641 QNIEIDRNGVLTGRYDNGQVMDLYALTLADFHNEQGLRKEGGNLFSETRSSGPAMTGLAG 700 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + LE SN + E ++I + F + + I + +ML I + Sbjct: 701 TRGLGEISSNSLEMSNVDLATEFVKLIQTEKGFQANSKTIQTTD-TMLGIIMQM 753 >gi|323700159|ref|ZP_08112071.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323460091|gb|EGB15956.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 558 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVA 60 S G++ +R++ + +N++N +T GF+ ++F ++ A N + Q V Sbjct: 6 SLFSGISGLTVHSERMTVIGNNLANVNTTGFKGAMMQFEDLASADFATVNGVGQVGRGVR 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLVSAS 118 Y G+F ++ D A+ GD F + TR G F+ DG LV Sbjct: 66 VSTIYSDWGQGAFETSTEATDMAISGDGLFVVSPLGEDEKYYTRAGNFRFDSDGYLVDPH 125 Query: 119 GK 120 G Sbjct: 126 GY 127 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--- 189 + +V +G IS G+V+ + L + G R + + + P Sbjct: 444 QNISVSREGVISGHYSNGQVLELYAVTLATFTNQHGLRREGGNLFTETLESGPALTGQAG 503 Query: 190 --SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T+ LE SN + E MI + F + T +I + + E I Sbjct: 504 STGKGTIDGNALEMSNVDMATEFVNMITTQRGFQANTKVITTVDSMLGEVI 554 >gi|315057484|gb|ADT71813.1| Flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni S3] gi|315926889|gb|EFV06255.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315926904|gb|EFV06270.1| flagella basal body rod family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 544 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKIS 57 SF G++ + + A+N++N +T GF+ +F ++ + Q Sbjct: 1 MNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGY 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 + + E GS +++ E D AL+G +F + G TR+G F+ +G LV Sbjct: 61 GSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGNAYYTRNGSFRRDANGYLVD 120 Query: 117 ASGKYPVLDMA 127 + G + + M Sbjct: 121 SYGNFVLGTMN 131 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 428 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 487 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 488 GQVVNTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541 >gi|207108222|ref|ZP_03242384.1| flagellar basal-body rod protein (flgG) [Helicobacter pylori HPKX_438_CA4C1] Length = 137 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 18/137 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAIKNDIDQKIS 57 MQ + A RL ++N++N +T GF+ F + + + + Sbjct: 1 MQNGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITGDFLRLYQQYREQLPLEDQ 60 Query: 58 FVAS--------------GKEYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTR 102 AS + Y + +G+F T LDFAL + +FA+++ G+ TR Sbjct: 61 TKASAKYLNRNLNRVPILSEIYTDRSLGAFEETHNPLDFALTSPNLYFAIQTNEGVAYTR 120 Query: 103 DGRFKVTDDGSLVSASG 119 DG F V DG LV+ +G Sbjct: 121 DGHFSVDKDGFLVTLNG 137 >gi|332296627|ref|YP_004438550.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] gi|332179730|gb|AEE15419.1| flagellar hook-basal body protein [Thermodesulfobium narugense DSM 14796] Length = 559 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 12/131 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + ++ + + + +N++N +T+GF+ V FS+++ + + + Sbjct: 1 MLRAMSSAVSGLQNNQTAMDVIGNNIANVNTIGFKASTVTFSQMLSQTLSGASAPQNGLG 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 S +TG D A++G+ +F + + TRDG F V Sbjct: 61 GINPMQIGLGTQIAAISTPFTSSSTENTGVNTDLAIQGNGFFIVNNGSQNFYTRDGSFNV 120 Query: 109 TDDGSLVSASG 119 +G+LV+++G Sbjct: 121 DANGNLVNSAG 131 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 13/111 (11%), Positives = 40/111 (36%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + +++ + G I+ I + L + G ++ S + + + Sbjct: 443 QSYSIDQSGVITGTYSNGLTNAIGQIALANFPNPSGLTSNGSNIYSTSSNSGTAQIGAAG 502 Query: 193 -----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T+ LE SN + + +I + + + +I +++ + + + Sbjct: 503 SGGIGTIIPSALEMSNVDLSQQFTNLITTERGYEANARVITTSDQMLQDLL 553 >gi|317154735|ref|YP_004122783.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316944986|gb|ADU64037.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 554 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFV 59 +S G+ +R++ + +N++N +TVGF+ ++F +++ A N + Q V Sbjct: 5 SSLYAGITGLTVHSERMTVIGNNLANVNTVGFKGTWMQFEDLLSQDFATVNGVGQIGRGV 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVS 116 Y GSF S+ D A+ GD F + SP+G+ +R G F+ +DG LV Sbjct: 65 RVSTIYSDFGQGSFESSTEATDVAISGDGMF-VLSPKGLDSKFYSRAGNFRFDNDGYLVD 123 Query: 117 ASGKYPVLD 125 G Y V Sbjct: 124 PHG-YVVQG 131 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--- 189 + +V +G ++ G+VI + L + G R + S P Sbjct: 440 QNISVSREGVLTGHYSNGEVIELYALTLATFTNKHGLRREGGNLFSETRESGPALTGQAG 499 Query: 190 --SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 TV LE SN + E +MI + F + T +I + + E I Sbjct: 500 SSGKGTVDGNALELSNVDMATEFVRMITTQRGFQANTKVITTTDSMLGEVI 550 >gi|260853466|ref|YP_003227357.1| putative lateral flagellar hook protein [Escherichia coli O26:H11 str. 11368] gi|260866413|ref|YP_003232815.1| putative lateral flagellar hook protein [Escherichia coli O111:H- str. 11128] gi|257752115|dbj|BAI23617.1| predicted lateral flagellar hook protein [Escherichia coli O26:H11 str. 11368] gi|257762769|dbj|BAI34264.1| predicted lateral flagellar hook protein [Escherichia coli O111:H- str. 11128] gi|323158103|gb|EFZ44202.1| hypothetical protein ECEPECA14_0101 [Escherichia coli EPECa14] gi|323178494|gb|EFZ64072.1| hypothetical protein ECOK1180_3007 [Escherichia coli 1180] Length = 400 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F + +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|220929459|ref|YP_002506368.1| hypothetical protein Ccel_2042 [Clostridium cellulolyticum H10] gi|219999787|gb|ACL76388.1| protein of unknown function DUF1078 domain protein [Clostridium cellulolyticum H10] Length = 454 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 16/135 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S G++ A + ++ + +N++N +T+GF+ +V F E+ Sbjct: 1 MMRSMFSGVSGLKAHQAKMDVIGNNVANVNTLGFKAGRVTFQEIFNQTLRGAGAPDAATA 60 Query: 54 -------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGIILTRDG 104 Q +A G GS T D ++ GD +F ++ TR G Sbjct: 61 RGGTNPMQIGLGIAVGSIDNQMTGGSPQRTDNPTDLSISGDGFFIVKGSIADTFKFTRAG 120 Query: 105 RFKVTDDGSLVSASG 119 F + G+LVS G Sbjct: 121 NFGLDKLGNLVSGDG 135 Score = 82.0 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 11/112 (9%) Query: 139 IFNVGEKGE---ISQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIP------PTPLE 187 FN+G G + G+ + + L D G + + P P Sbjct: 340 TFNIGSDGMLTGVYSNGQQQPLGLIALAGFDNPAGLQKVGGNLFIPTTNSGDFTKGVPAG 399 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E MI + F + + +I +++ + E + Sbjct: 400 SQGVGTLSPGTLEMSNVDLSREFTDMIVTQRGFQANSRIITTSDEMLQELVN 451 >gi|331645418|ref|ZP_08346522.1| LfgE [Escherichia coli M605] gi|331045580|gb|EGI17706.1| LfgE [Escherichia coli M605] Length = 400 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAADGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|332669198|ref|YP_004452206.1| flagellar hook-basal body protein [Cellulomonas fimi ATCC 484] gi|332338236|gb|AEE44819.1| flagellar hook-basal body protein [Cellulomonas fimi ATCC 484] Length = 392 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 12/149 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + + L +N++N +T GF++ + +F + + + Sbjct: 1 MLRSLFSGISGLRSHQTMLDVTGNNIANVNTTGFKSSQTQFQDTLSQMLQNGGGAQDGVG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + Q V + G+ TG D ++GD +F + TR G F Sbjct: 61 GTNPAQVGLGVRVAGITTNFTQGASQMTGRSTDMMIQGDGFFVVRKGAESYYTRAGSFDF 120 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKD 137 G +V V A+V + Sbjct: 121 DSTGQMVLPGEGALVQGWAAVNGVVDTNG 149 Score = 75.1 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 + F +G G I+ G + I + + S G + S ++ P +G Sbjct: 278 QSFALGADGTITGAFSNGLKQTIGRLAIGSFTNPSGLEKAGGSLFRTSVNSGDPQVGPAG 337 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E +I + F + + +I +++ + E + Sbjct: 338 TGGRGTLAGGALEMSNVDLSSEFTSLIIAQRGFQANSRVITTSDEVLQELVN 389 >gi|212639558|ref|YP_002316078.1| flagellar hook protein FlgE [Anoxybacillus flavithermus WK1] gi|212561038|gb|ACJ34093.1| Flagellar hook protein FlgE [Anoxybacillus flavithermus WK1] Length = 460 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 41/168 (24%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G+ + +L + +N+SN +T G++ +V F ++V + Sbjct: 1 MLRSMFTGIGGIRNFQYKLDVIGNNISNVNTYGYKKARVTFKDLVSQQISAATSSTGTRG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL-----------ESPRG 97 G GS +T LD AL GD +F + + P G Sbjct: 61 GINGKQIGLGSGLGSIETIHTQGSTQTTSRPLDLALGGDGFFVVGSINDVTLISMDGPAG 120 Query: 98 II------------------LTRDGRFKVTDDGSLVSASGKYPVLDMA 127 + TR G F + + G +V++ G+Y + + A Sbjct: 121 KLGTNKVNTGVPIDRVFNLSFTRAGNFYLDEYGYIVNSDGQYLIGEAA 168 Score = 87.0 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 22/130 (16%) Query: 131 IQIPQKDEIFNVGEKGEIS---QKGK--VIATMGLYSVDMSQGFVRRENS---------- 175 IQIP+ + F + G+++ G+ + + L G + + Sbjct: 329 IQIPKTAKSFGITADGKVTFIDSNGQLKIAGQILLAQFPNPTGLEKMGGNTFKETNNSGK 388 Query: 176 ------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 G++ N P + +G + G LE SN + E +MI + F + T +I Sbjct: 389 LDRNANGLTINELSRPGLNGAG-EIISGALEMSNVDLSEEFTEMIVAQRGFQANTRIITT 447 Query: 230 NEKSMLEAIR 239 +++ + E + Sbjct: 448 SDEILQELVN 457 >gi|303326311|ref|ZP_07356754.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] gi|302864227|gb|EFL87158.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] Length = 503 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 M ++ IG L Q + +N++N T+G++ FS+++ + Sbjct: 1 MNSALYIGATGMKGLSQGMQVTTNNLANVSTIGYKQQNTLFSDMLSTSQGGTGDWWNAQE 60 Query: 52 -----IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + Q V + G+ +T T D A+ G +F + + TR G F Sbjct: 61 NSRVALGQTGKGVQVDAVRTIFQQGALEATNTVTDMAINGKGFFQVSDGANLYYTRAGDF 120 Query: 107 KVTDDGSLVSASG 119 + ++G + +G Sbjct: 121 RPDNEGVWRTPTG 133 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--- 189 + G + + +G+ + + + G R ++ S +E Sbjct: 389 STIGINPDGTVVGRYSNGQGQNLWQIPVCRFTSEDGLRREGSNLFSATEEAGQMEMGVAG 448 Query: 190 --SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + TV +E+SN + EM MI + F S + ++ ++ + +A Sbjct: 449 TENYGTVNAYNVENSNVDMATEMVNMIITQRGFQSNSKVVTTADQMLQKA 498 >gi|170681389|ref|YP_001742373.1| lateral flagellar hook protein LfgE [Escherichia coli SMS-3-5] gi|170519107|gb|ACB17285.1| lateral flagellar hook protein LfgE [Escherichia coli SMS-3-5] Length = 400 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGSCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|256020228|ref|ZP_05434093.1| flagellar basal body FlaE domain-containing protein [Shigella sp. D9] gi|332281390|ref|ZP_08393803.1| lateral flagellar hook protein [Shigella sp. D9] gi|332103742|gb|EGJ07088.1| lateral flagellar hook protein [Shigella sp. D9] Length = 400 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|134297198|ref|YP_001120933.1| flagellar hook protein FlgE [Burkholderia vietnamiensis G4] gi|134140355|gb|ABO56098.1| flagellar basal body FlaE domain protein [Burkholderia vietnamiensis G4] Length = 413 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVAS- 61 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I + Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G G+ +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 62 GSVQKQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 + + S +P + N+ + K++ L S D Sbjct: 122 LMGYAADKNGVVSTAQTVPLQAPTSNIAP----TPTTKIVGQFNLNSQD 166 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ V+ + + + + G + + P G Sbjct: 301 TTFSIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLINLGGNQYAETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|258404710|ref|YP_003197452.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] gi|257796937|gb|ACV67874.1| fagellar hook-basal body protein [Desulfohalobium retbaense DSM 5692] Length = 433 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 9/136 (6%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISF 58 Q + G++A A + ++ + +N++N++T F+ + FS+++ + + Q + Sbjct: 4 QGALYTGVSALGATGEAMNVIGNNLANSNTTAFKASRTLFSDLLASDVSSSSGTSQVGTG 63 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVS 116 V G F T + D A+EG+ +F + P TR G F D+G LV+ Sbjct: 64 VGLASVDTVFSQGGFNPTESSTDLAIEGEGFFKVSDPNTGADAYTRAGGFNFNDEGFLVN 123 Query: 117 ASG----KYPVLDMAS 128 G Y V + Sbjct: 124 PQGYRVQGYDVDGDGN 139 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 9/109 (8%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV- 192 V ++G + G+ +A +GL + G + NS + N P G Sbjct: 322 IEVDQEGMVIGSYSNGESKDLAKLGLAKFANNNGLAQVGNSLFEATNASGLPAIGTPGAG 381 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ LE S + + MI + + + + I + + E + Sbjct: 382 VGTIRSNALEQSTVDIAKQFTDMITTQRAYQANSRTITTTDDMLQEVVN 430 >gi|171321838|ref|ZP_02910739.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MEX-5] gi|171092876|gb|EDT38128.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MEX-5] Length = 413 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I A Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTAL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 62 ASVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYLSDKNGVVNTAQTVPLQAPTTNISPTATTKITGQF 160 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ V+ + + + + G V + P G Sbjct: 301 TTFSIGADGKLTGNYSNGQTAVLGQIAIANFNNPNGLVNLGGNQYAETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|15887919|ref|NP_353600.1| flagellar hook protein FlgE [Agrobacterium tumefaciens str. C58] gi|15155515|gb|AAK86385.1| flagellar hook protein [Agrobacterium tumefaciens str. C58] Length = 425 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A +L TV DN++N T G++ FS +V + V S Y Sbjct: 9 TGVSGMNAQANKLGTVGDNIANASTTGYKRASTSFSSLVLPSSS-GSYASGGVQSNVRYS 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 E G+ T + D A++G+ +F ++ G TR G F+ +G L +A+G Sbjct: 68 ISEQGNLSYTTSSTDLAIQGNGFFVVQDGSGTPYLTRAGSFQKNSEGYLENAAG 121 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 15/128 (11%) Query: 122 PVLDMASVPIQIPQKDEIFNVGEKG---EISQKG--KVIATMGLYSVDMSQGFVRRENSG 176 VL+ P + + +G+ G + Q G + I + L +V + + Sbjct: 300 AVLNGNG-----PSQIKDVEIGKDGLVTAVYQDGGRRNIYQLALATVPSVDNLTPQNGNV 354 Query: 177 ISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 P+ + + S +++G LE SN + E+ MI + + + + + Sbjct: 355 YLPSNDSGVVTIGFPQSGSFGYIQKGALEGSNVDIASELTDMIESQRIYTANSKVFQTGS 414 Query: 232 KSMLEAIR 239 M I Sbjct: 415 DLMDVLIN 422 >gi|188494513|ref|ZP_03001783.1| Flagellar basal body protein FlgE [Escherichia coli 53638] gi|188489712|gb|EDU64815.1| Flagellar basal body protein FlgE [Escherichia coli 53638] Length = 400 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|305432527|ref|ZP_07401689.1| flagellar hook protein [Campylobacter coli JV20] gi|304444566|gb|EFM37217.1| flagellar hook protein [Campylobacter coli JV20] Length = 545 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M TSF G++ + A+N++N +T GF+ +F ++ + + Q Sbjct: 1 MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS +++ E D AL+G +F + G TR+G F+ G+LV Sbjct: 61 YGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGEAYYTRNGAFRRDAAGNLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVINTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|301645413|ref|ZP_07245354.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|307136858|ref|ZP_07496214.1| flagellar basal body FlaE domain-containing protein [Escherichia coli H736] gi|331640713|ref|ZP_08341860.1| LfgE [Escherichia coli H736] gi|301076297|gb|EFK91103.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|315616827|gb|EFU97444.1| flgE [Escherichia coli 3431] gi|323181547|gb|EFZ66967.1| flgE [Escherichia coli 1357] gi|331040087|gb|EGI12295.1| LfgE [Escherichia coli H736] Length = 400 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|300311352|ref|YP_003775444.1| flagellar basal-body rod protein FlgE [Herbaspirillum seropedicae SmR1] gi|300074137|gb|ADJ63536.1| flagellar basal-body rod FlgE protein [Herbaspirillum seropedicae SmR1] Length = 432 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 11/168 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ + L + +N++N TVGF+ + +F+++ N + Sbjct: 2 GFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQAQFADMYANSMNRSGNSPVGIGVSV 61 Query: 64 EYL--SKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSA- 117 + G+ S+ LD A+ GD +F L + + + R+G+F++ G +V+ Sbjct: 62 PAVAQQFTQGNISSSNNPLDIAINGDGFFQLSASLTNKSPMYGRNGQFQLDKSGYIVNPS 121 Query: 118 -SGKYPV----LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 +G Y + P+ + IS K + + + + Sbjct: 122 MNGAYLMGWAAGAQGGDPVPLQIDTSSIPATPTTTISTKVNLDSRLSV 169 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 10/115 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLE 187 P F+V + G I +Q+ K + T+ L + G N+ + + +PL Sbjct: 315 PGSLSSFSVDKDGSIIGSYSNQQTKNLGTVVLVNFANPNGLQPLGNNLYQASSAAGSPLV 374 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T++ EDSN + E+ MI + + + + I + + + Sbjct: 375 GKPTTGTFGTLQARAKEDSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQTLV 429 >gi|4928060|gb|AAD33398.1|AF129422_1 flagellar hook protein FlgE [Sinorhizobium meliloti] Length = 396 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A RLSTVA+N++N +T G++ +FS ++ N V + Y Sbjct: 3 TGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGSYNS-GGVQTEVRYS 61 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + G+ T + D A++G +F +E G TR G F +G+LV+ASG Sbjct: 62 ISQQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRAGSFVPDSEGNLVNASG 115 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 10/135 (7%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGF 169 + G D ++ P K + + G + K + + L +V Sbjct: 259 TTQLGYAFNADGGNIDGNAPSKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKL 318 Query: 170 VRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + S + + +G + G LE SN + E+ MI + + + + Sbjct: 319 KPESGNVYSQGVDSGVIITGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANS 378 Query: 225 TLIDENEKSMLEAIR 239 + + + + Sbjct: 379 KVFQTGSELLEVLVN 393 >gi|223039214|ref|ZP_03609504.1| flagellar hook protein [Campylobacter rectus RM3267] gi|222879575|gb|EEF14666.1| flagellar hook protein [Campylobacter rectus RM3267] Length = 543 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 12/161 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----NDIDQK 55 M S G++ + A N++N + VG+ +F + N + Sbjct: 1 MVRSLYNGVSGVKTQSFSMDVWAHNIANINNVGYTASIPEFKSIFYQTSFKAGNNPTQDQ 60 Query: 56 ISFVASG--KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + A+G + G + T LD A+ G +F + + TR G F V D Sbjct: 61 VGLGATGMTTALSFYKQGPLMKTDNVLDMAIGGKGFFGVTNGMDTYYTRAGSFGVNKDRY 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFN----VGEKGEISQ 150 LV+ G Y VL + Q+ + K ++Q Sbjct: 121 LVTNQGNY-VLGTQNTLTQVTPSQGAIEAFGRINSKAAVTQ 160 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 151 KGKV--IATMGLYSVDMSQGFVRRE--------NSGISPNIPPTPLEDLSGVTVKRGFLE 200 G+V +A + LY QG + NSG + + + G + LE Sbjct: 442 NGQVRSVAKVALYHFQNEQGLAKMGDNIYSQSANSGAAFFYKDAGGKSIYGAKIASNTLE 501 Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 SN + + ++I + +++ I + + + AI Sbjct: 502 QSNVDLAQALTEIIVTQKAYDANAKSITTSNEMLQRAI 539 >gi|57169039|ref|ZP_00368167.1| flagellar hook protein flgE Cj0043 [Campylobacter coli RM2228] gi|57019584|gb|EAL56274.1| flagellar hook protein flgE Cj0043 [Campylobacter coli RM2228] Length = 545 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKI 56 M TSF G++ + A+N++N +T GF+ +F ++ + + Q Sbjct: 1 MMTSFYNGVSGVKTNSFGIDVYANNIANVNTTGFKYSDAQFKDIFYSTITTQSTNPAQGG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLV 115 + + E GS +++ E D AL+G +F + G TR+G F+ G+LV Sbjct: 61 YGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGEAYYTRNGAFRRDAAGNLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 E +N+ + G I K ++ + LY+ QG V ++ + Sbjct: 429 EQYNISDDGSIVAQFSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKD 488 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 489 GQVINTAKFKGGFLEQSNVDLSAELSNLIVTQKAFDASSKSITTSDQMIQKAIN 542 >gi|306813303|ref|ZP_07447496.1| flagellar basal body FlaE domain-containing protein [Escherichia coli NC101] gi|305854066|gb|EFM54505.1| flagellar basal body FlaE domain-containing protein [Escherichia coli NC101] Length = 400 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|225871934|ref|YP_002753388.1| flagellar hook protein flgE [Acidobacterium capsulatum ATCC 51196] gi|225793054|gb|ACO33144.1| flagellar hook protein flgE [Acidobacterium capsulatum ATCC 51196] Length = 409 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 16/149 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-----I 56 +SF+I L A L T+A+N+SN +T F++ + F ++ + Sbjct: 1 MSSFSIPLTGLEASSTSLDTIANNLSNMNTTAFKSQQASFGDLFYQQIGNSGSGDPLEVG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 + V + G+ TG D AL G +F + + G TRDG F +T G L Sbjct: 61 AGVQVAATNTNFTQGTVSETGNATDVALNGSGFFVVRNSDGTPAYTRDGNFTLTSSGDLT 120 Query: 116 SASGKYPVL----------DMASVPIQIP 134 + G+ + + A PIQIP Sbjct: 121 TQGGQAVMGYPAANGVVNTNSALSPIQIP 149 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV- 192 F +G G +S + + + + L S+ QG + + L+G Sbjct: 297 FTIGADGTVSAQFSNGQTQAVGQLALASITNEQGLQLDGGNLYQTTLASGSASIGLAGSA 356 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TV+ LE SN N E ++ + + + + ++ + I Sbjct: 357 GLGTVQDSALEGSNVNISTEFSNLVVAQNAYEASSKALTTFDQVAQDTIN 406 >gi|213967581|ref|ZP_03395729.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] gi|301385714|ref|ZP_07234132.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato Max13] gi|302060074|ref|ZP_07251615.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato K40] gi|302134833|ref|ZP_07260823.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927882|gb|EEB61429.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato T1] Length = 586 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A+ + + + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 62 AATQQNFNQGD--SMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 +VG G + K I + L S QG R ++ + + ++ G Sbjct: 473 SSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESAESGVADYEVPG 532 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|28869141|ref|NP_791760.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] gi|28852381|gb|AAO55455.1| flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000] Length = 586 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKISF 58 SFN ++ A +RL +N++N+ T+GF++ + +FS + +G+ +N I + Sbjct: 2 SFNTAISGINAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSSAQLGSGRNAIGDGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A+ + + + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 62 AATQQNFNQGD--SMTTSGNPLDMRIQGNGFFVVSDKGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 +VG G + K I + L S QG R ++ + + ++ G Sbjct: 473 SSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESAESGVADYEVPG 532 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 533 VGTLGSLVGGALEGSNVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 585 >gi|207108815|ref|ZP_03242977.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1] Length = 167 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 >gi|222084885|ref|YP_002543414.1| flagellar hook protein [Agrobacterium radiobacter K84] gi|221722333|gb|ACM25489.1| flagellar hook protein [Agrobacterium radiobacter K84] Length = 425 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 9/201 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RL+TV+DN++N+ T G++ FS +V + + V + Sbjct: 6 SMKTAISGMNAQANRLATVSDNIANSSTTGYKQASTSFSSLVLPSSSG-NYNSGGVETTV 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 Y + G+ +T + D A++G+ +F ++S G LTR G F G+LV+A+G Sbjct: 65 RYAISQQGTVSATTSSTDLAIQGNGFFVVQSAAGQTFLTRSGDFSADASGNLVNAAGFTL 124 Query: 123 VL--DMASVPIQI---PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 + + P + NV G S + +M +++ + ++G Sbjct: 125 MGYSSASGAPSVVVNGFSGMVPINVTPSGT-SVAATTVGSMT-GNLNSNATIATSSSTGY 182 Query: 178 SPNIPPTPLEDLSGVTVKRGF 198 P+ P+ + + G+ Sbjct: 183 LPSENTYPVTTDTSKSSITGY 203 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 63/204 (30%), Gaps = 19/204 (9%) Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + N D S + G Y S VGS T + D AL F L G Sbjct: 227 QVYNQADLVASPTSGGPLYSSAAVGSTEMTFDD-DGALVSGGTFDLSFTSGST---TQSI 282 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLY 161 + G A+ M Q P + + G +S K + + L Sbjct: 283 AMDMTGFTQVATDFSATGKMDG---QAPNPVTSVTIAKDGTVSAVYKDSSTKELYRIPLA 339 Query: 162 SVDMSQ------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 +V G V N + P G ++ G LE+SN + E+ MI Sbjct: 340 TVASPDSLTLESGNVYSANGDSGVTVTGWPQSGGLGY-IQSGALEESNVDLATELTNMIT 398 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + + + + + + Sbjct: 399 AQKSYTANSKVFQAGSDLLDVLVN 422 >gi|331666546|ref|ZP_08367420.1| LfgE [Escherichia coli TA271] gi|331065770|gb|EGI37654.1| LfgE [Escherichia coli TA271] Length = 400 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|15645489|ref|NP_207664.1| flagellar hook protein FlgE [Helicobacter pylori 26695] gi|2506418|sp|P50610|FLGE_HELPY RecName: Full=Flagellar hook protein flgE gi|2313997|gb|AAD07911.1| flagellar hook (flgE) [Helicobacter pylori 26695] Length = 718 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|261856360|ref|YP_003263643.1| flagellar hook-basal body protein [Halothiobacillus neapolitanus c2] gi|261836829|gb|ACX96596.1| flagellar hook-basal body protein [Halothiobacillus neapolitanus c2] Length = 418 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 18/218 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVAS 61 SFN + A ++ L ++N++N ++ GF++ + +F ++ V A N V + Sbjct: 2 SFNTSITGLNAAQKDLDVTSNNIANANSTGFKSSRAQFGDIYAVSAYGNSKTATGQGVLT 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 GS T LD A+ G +F + + +R G DG +V+ + Sbjct: 62 EAVQQQFTQGSLQFTNNSLDLAISGQGFFTFQPTLDSLQSVYSRAGALGANKDGFIVNTN 121 Query: 119 GKY----PVLDMAS---------VPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 G+Y PV + PIQ+P S AT+ + Sbjct: 122 GQYLKALPVSANGTLQSTSLASAKPIQLPVAAGAPKATTLVTQSFNLPASATVPTVTPFD 181 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSN 203 + S N + T+ +++ +N Sbjct: 182 TTQATPDPASYTQANSQQVYDSLGNTHTLTSYYVKTAN 219 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 11/112 (9%) Query: 140 FNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT 193 +VG G I G+ I + L + QG + N+ + ++ P G Sbjct: 307 VSVGSNGLIQASYSNGQNIPLGMVALANFSNPQGLKQVGNNSWAESVDSGAPTAGQPGTG 366 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ G LE SN + ++ +I + F + I +K+ +++ NI Sbjct: 367 TFGLIQGGALEQSNVDLTQQLVNLITAQRNFQANAQAIQT-DKTATDSVINI 417 >gi|170021360|ref|YP_001726314.1| flagellar basal body FlaE domain-containing protein [Escherichia coli ATCC 8739] gi|169756288|gb|ACA78987.1| flagellar basal body FlaE domain protein [Escherichia coli ATCC 8739] Length = 400 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDSGT 126 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|319781665|ref|YP_004141141.1| flagellar hook-basal body protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167553|gb|ADV11091.1| flagellar hook-basal body protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 419 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 13/191 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N+DT G++ +FS +V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANSDTTGYKRSSAEFSTLVMPSTGGAYNSGGVTT 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + ++ +S + G T + D A+ GD +F ++ P G TR G F G LV+++G Sbjct: 63 TIRQAVS-DPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPYLTRAGAFVPDGQGRLVNSAG 121 Query: 120 KYPVL-----DMASVPIQIPQKDEIFNVGEKG---EISQKGKVIATMGLYSVDMSQGFVR 171 + + + + + + ++G S +G + + ++ + Sbjct: 122 FQLMAYSYENGVPAATVNGFEGLVPVVISDQGMTATPSTEGSFAGNLPAGATPVATANLP 181 Query: 172 RENSGISPNIP 182 N+ + Sbjct: 182 AANAATAQYTS 192 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 28/196 (14%) Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + S G TGT + + F + P G L ++ Sbjct: 239 TAGGLLGSANLTFDTTTGKL--TGTPTNVS------FTV--PNGATL----NLDLSA--- 281 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQG 168 ++ G + A V P + + + G I + K + + L V Sbjct: 282 -LTQLGTGFTVSDAQVNGNAPSTIDKVQISKDGTIYAQYKDGSTKPLYKIPLADVQSPDQ 340 Query: 169 FVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + S + ++ G LE+SN + E+ MI + + + Sbjct: 341 LKALPGNVYSQGTESGAVRVGFANEGKLGSIISGALENSNVDIAEELTNMIAAQRSYTAN 400 Query: 224 TTLIDENEKSMLEAIR 239 + + M + Sbjct: 401 SKVFQTGSDLMDVLVN 416 >gi|320538206|ref|ZP_08038101.1| fagellar hook-basal body protein [Treponema phagedenis F0421] gi|320145023|gb|EFW36744.1| fagellar hook-basal body protein [Treponema phagedenis F0421] Length = 452 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 12/133 (9%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------------FV 59 + R+ + +N++N +T GF+ +V F +++ + + V Sbjct: 1 MQNHQTRMDVIGNNVANVNTTGFKRGRVNFQDLISQQLSGASRPNEEVGGVNPKEVGLGV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ +TG D A++G+ +F L+ TR G F V DG+LV+ + Sbjct: 61 MVASIDTVHTQGALQTTGINTDIAIQGNGFFILKDGEKSFYTRAGAFGVDRDGTLVNPAN 120 Query: 120 KYPVLDMASVPIQ 132 V + I+ Sbjct: 121 GMRVQGWMAEDIE 133 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSG 191 E F + + G I+ + I + L G + EN+ I N +SG Sbjct: 338 ENFKIDQSGIITGVYSNGASREIGQLALAGFANQGGLEKAGENTYIQSNNSGIANITVSG 397 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V + G LE SN + + MI + F + I ++ +MLE + N+ Sbjct: 398 VMGKGKLIAGTLEMSNVDLTDQFTDMIITQRGFQAGAKTIQTSD-TMLETVLNL 450 >gi|220913724|ref|YP_002489033.1| hypothetical protein Achl_2983 [Arthrobacter chlorophenolicus A6] gi|219860602|gb|ACL40944.1| protein of unknown function DUF1078 domain protein [Arthrobacter chlorophenolicus A6] Length = 390 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 12/132 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK----------- 49 M S G++ A + L +N++N +T GF+ +F + + + Sbjct: 1 MLRSLYSGISGLRAHQTMLDVTGNNIANVNTTGFKASATQFQDTLSQMTQAAAAGQDGAA 60 Query: 50 -NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 ++ Q V + GS STG D + GD +F TR G F+ Sbjct: 61 GSNPAQIGLGVRVAGISTNFGQGSAQSTGRGSDMMISGDGFFITGKGAQNFYTRAGAFEP 120 Query: 109 TDDGSLVSASGK 120 +G LVS G Sbjct: 121 DSEGRLVSPDGG 132 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +V+A + L G + S TP + G T+ G LE SN + Sbjct: 296 EVLARVALARFANPGGLEKAGGSSYVATGNSGAAQVGTPGQAGMG-TLATGSLEMSNVDL 354 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +I + F + +I +++ + E Sbjct: 355 SQEFTNLIVAQRGFQANARIITTSDEVLQELSN 387 >gi|86152379|ref|ZP_01070589.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 260.94] gi|85840676|gb|EAQ57928.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 260.94] Length = 854 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 22/206 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 K+ G+ V+ +G + V I + + + G I V + Sbjct: 121 KLDAYGNFVNNAG-FVVQGWN---INWDTQSIDSSRTPQNIFIDPGMHIPAAKSTEVAIK 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGV 192 NSG+S TP+ L V Sbjct: 177 ANL----NSGLSVGTAKTPIYGLDSV 198 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 742 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 801 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 802 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 851 >gi|28897552|ref|NP_797157.1| flagellar hook protein FlgE [Vibrio parahaemolyticus RIMD 2210633] gi|153839685|ref|ZP_01992352.1| FlgE [Vibrio parahaemolyticus AQ3810] gi|260364611|ref|ZP_05777213.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|260878284|ref|ZP_05890639.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|260898114|ref|ZP_05906610.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|5361008|gb|AAD42915.1|U12817_9 polar flagellar FlgE homolog [Vibrio parahaemolyticus] gi|28805764|dbj|BAC59041.1| polar flagellar FlgE [Vibrio parahaemolyticus RIMD 2210633] gi|149746795|gb|EDM57783.1| FlgE [Vibrio parahaemolyticus AQ3810] gi|308086119|gb|EFO35814.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|308090147|gb|EFO39842.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|308115102|gb|EFO52642.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|328473453|gb|EGF44301.1| flagellar hook protein FlgE [Vibrio parahaemolyticus 10329] Length = 437 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F++V N + + Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P+ +TR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEMTRNGAFHLNKENYMVTAND 122 Query: 120 ----KYPVLDMAS-------VPIQIPQKDEIFNVGEKGEISQK 151 Y V + PI IP + E+ Sbjct: 123 EFLLGYQVNPESGEVSSYEPQPINIPAEFGKPKQTANIEVGVN 165 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ + + L V QG ++ + E Sbjct: 324 TKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESN 383 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 384 KGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435 >gi|317180632|dbj|BAJ58418.1| flagellar hook protein FlgE [Helicobacter pylori F32] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|315125109|ref|YP_004067113.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018831|gb|ADT66924.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 855 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 22/206 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 K+ G+ V+ +G + V I + + + G I V + Sbjct: 121 KLDAYGNFVNNAG-FVVQGWN---INWDTQSIDSSRTPQNIFIDPGMHIPAAKSTEVAIK 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGV 192 NSG+S TP+ L V Sbjct: 177 ANL----NSGLSVGTAKTPIYGLDSV 198 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 743 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 802 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 803 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 852 >gi|308063336|gb|ADO05223.1| flagellar hook protein FlgE [Helicobacter pylori Sat464] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|307823531|ref|ZP_07653760.1| fagellar hook-basal body protein [Methylobacter tundripaludum SV96] gi|307735516|gb|EFO06364.1| fagellar hook-basal body protein [Methylobacter tundripaludum SV96] Length = 597 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 77/208 (37%), Gaps = 36/208 (17%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--DQKISFVAS 61 SF L+ A L +N++N+ TVGF+ + +F++V + + Q S V Sbjct: 2 SFATALSGLQAASTNLQVTGNNIANSQTVGFKESRAEFADVYASSIGGVSKTQPGSGVKV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFA----LESPR------------GIILTRDGR 105 + + G+ T LD AL G+ +F + P TR+G Sbjct: 62 TEVAQQFKDGTIDPTSNSLDLALSGNGFFVLADTVNLPDPANPTAPVDPSVPTSYTRNGA 121 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 FK+ G++V++ GKY + G +G + ++D Sbjct: 122 FKLDSSGNVVNSQGKYLL-----------------AFAANGTTVAEGFSVGVFRPLTIDT 164 Query: 166 SQGF-VRRENSGISPNIPPTPLEDLSGV 192 SQG EN ++ I + V Sbjct: 165 SQGLPNSTENINLALTINGGATAPTTTV 192 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 13/115 (11%) Query: 135 QKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN------SGISPNIPP 183 +V + G + + K + + L +Q + + S I Sbjct: 482 GNLTGIDVDDAGVVFARYSNGGSKTLGQVALARFQSNQSLAKLGDTAWAKTSSSGAPIYG 541 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ G T++ LE S + ++ ++I Q + + + I EK+++E I Sbjct: 542 AAGDNNFG-TIQSSALESSTVDLSAQLVKLIIAQQAYQANSQTI-TTEKTLVETI 594 >gi|91791429|ref|YP_561080.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] gi|91713431|gb|ABE53357.1| protein of unknown function DUF1078-like protein [Shewanella denitrificans OS217] Length = 392 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +F GL+ + + L V++N++N +T G+R + A+ D D+ Sbjct: 1 MLQAFYTGLSGLNSYSKNLDNVSNNIANMNTAGYRGMD----SFYQALGGDSDKPGLGAQ 56 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 VG TG + D A+ G +FAL + TR G+F+ + LV + Sbjct: 57 ISGLGYRFSVGDIRQTGNDFDLAITGTGFFALLDGEKVFYTRTGQFEFDQNNVLVDKNTG 116 Query: 121 YPVLDMASV 129 + V + S Sbjct: 117 FKVAGIDSN 125 Score = 42.0 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 6/48 (12%), Positives = 21/48 (43%) Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + +E SN + E M+ + + + + + +++ + + + N Sbjct: 341 QLATSSIEMSNVDLSQEFADMLVIQRGYQASSRILNVANQMIEQLYEN 388 >gi|261837904|gb|ACX97670.1| flagellar hook protein [Helicobacter pylori 51] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITHNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|59889780|emb|CAH19136.1| Lateral flagellar hook protein (FlgE-like) [Escherichia coli] gi|284920044|emb|CBG33101.1| lateral flagellar hook protein (FlgE-like) [Escherichia coli 042] Length = 400 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDSGT 126 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|146305250|ref|YP_001185715.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina ymp] gi|145573451|gb|ABP82983.1| flagellar basal body FlaE domain protein [Pseudomonas mendocina ymp] Length = 395 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI + A+ ++L+T++ N++N T GF++ + +F + Q + Sbjct: 2 SFNIAMTGLSAVNEQLNTISHNIANAGTTGFKSSRTEFGSIYAD-----SQAMGVEVLAT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + GS ++TG LD A+ G +F G + TR G F D +V+A+G Sbjct: 57 TQSISQGGSLVTTGRSLDLAISGGGFFVTRGSNGDVSYTRAGVFGADKDNYIVNAAGLKL 116 Query: 120 -KYPVLDMAS 128 YPV + Sbjct: 117 QGYPVDAAGN 126 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 40/103 (38%), Gaps = 10/103 (9%) Query: 140 FNVGEKGEISQK---GKVI--ATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT 193 +V + G + G+ + + L + + G + + L + GV Sbjct: 284 LSVEKDGMVYANYSNGQRMLQGQVALATFANAGGLKNVSGTAWVESAESGAALIGVPGVG 343 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + G LE+SN + ++ ++ + + + T ++ N++ Sbjct: 344 PFGELVAGSLENSNVDLTQQLVGLMEGQRNYQANTKVLTTNKE 386 >gi|108563278|ref|YP_627594.1| flagellar hook protein FlgE [Helicobacter pylori HPAG1] gi|217033066|ref|ZP_03438533.1| hypothetical protein HPB128_148g6 [Helicobacter pylori B128] gi|254779163|ref|YP_003057268.1| flagellar hook protein FlgE [Helicobacter pylori B38] gi|298736574|ref|YP_003729100.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|107837051|gb|ABF84920.1| flagellar hook protein [Helicobacter pylori HPAG1] gi|216945210|gb|EEC23895.1| hypothetical protein HPB128_148g6 [Helicobacter pylori B128] gi|254001074|emb|CAX29021.1| Flagellar hook protein FlgE [Helicobacter pylori B38] gi|298355764|emb|CBI66636.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|317009123|gb|ADU79703.1| flagellar hook protein FlgE [Helicobacter pylori India7] gi|317012675|gb|ADU83283.1| flagellar hook protein FlgE [Helicobacter pylori Lithuania75] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|317014278|gb|ADU81714.1| flagellar hook protein FlgE [Helicobacter pylori Gambia94/24] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|261839317|gb|ACX99082.1| flagellar hook protein FlgE [Helicobacter pylori 52] gi|317178772|dbj|BAJ56560.1| flagellar hook protein FlgE [Helicobacter pylori F30] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|308183024|ref|YP_003927151.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] gi|308065209|gb|ADO07101.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|15611871|ref|NP_223522.1| flagellar hook protein FlgE [Helicobacter pylori J99] gi|11386868|sp|Q9ZKY0|FLGE_HELPJ RecName: Full=Flagellar hook protein flgE gi|4155354|gb|AAD06366.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99] gi|307637557|gb|ADN80007.1| Flagellar hook protein [Helicobacter pylori 908] gi|325996148|gb|ADZ51553.1| Flagellar hook protein [Helicobacter pylori 2018] gi|325997744|gb|ADZ49952.1| Flagellar hook protein [Helicobacter pylori 2017] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|90422624|ref|YP_530994.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisB18] gi|90104638|gb|ABD86675.1| flagellar basal body FlaE [Rhodopseudomonas palustris BisB18] Length = 411 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G + A +LS VADN++N +T G++ +FS ++ + V + Y Sbjct: 9 TGGSGMTAQSNKLSAVADNIANVNTTGYKRASTEFSSLILKSGS-GSYNSGSVETQVRYA 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G+ T + D A++G+ +FA+ + G LTR G F G+L +A+G Y + Sbjct: 68 ISDPGTLQYTTSATDLAIQGNGFFAVSNAGGTPFLTRAGSFVPDGQGNLYNAAGYYLMGY 127 Query: 126 M--ASVPIQIPQKDEIFNVGEKGEISQKGKV 154 P + V G+ + +G Sbjct: 128 NLKNGPPNVVANGLTGLEVVNIGQTALEGNP 158 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 18/183 (9%) Query: 71 GSFISTGT-ELDFALEGDAWFALESPRGIILT-RDGR-FKVT-DDGSLVSASGKYPVLDM 126 G+ ++TG D + G A SP + LT +G F + + V+A ++ Sbjct: 230 GAPLATGNFSFDVSATGKGRLAGGSPTSLSLTIPNGSPFTLDLSSMTQVAADFQFKATVD 289 Query: 127 ASVPIQIPQKDEIFNVGEKGE---ISQKGKVIAT--MGLYSVDMSQGFV-RRENSGISPN 180 + P I V G I G IAT + L +V V N Sbjct: 290 GNSPSSID----KVEVATDGTMYAIYNDGTRIATYKIPLATVPSPDNLVPEVGNVYSIGI 345 Query: 181 IPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 D +G + VK LE SN + E+ MI + + + + + + Sbjct: 346 NSGNVQVDFAGHSGLGIVKAEALEASNVDLANELTAMIESQRGYTANSKVFQTGADLLDV 405 Query: 237 AIR 239 + Sbjct: 406 LVN 408 >gi|150395503|ref|YP_001325970.1| flagellar hook protein FlgE [Sinorhizobium medicae WSM419] gi|150027018|gb|ABR59135.1| flagellar basal body FlaE domain protein [Sinorhizobium medicae WSM419] Length = 402 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A RLSTVA+N++N +T G++ +FS ++ N V + Y Sbjct: 9 TGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGAYNS-GGVQTEVRYS 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + G+ T + D A++G +F +E G TR G F +G+LV+A+G Sbjct: 68 ISQQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRAGSFVPDSEGNLVNAAG 121 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 10/135 (7%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGF 169 + G D S+ P K + + G + K + + L +V Sbjct: 265 TTQLGYAFNADGGSIDGNAPSKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKL 324 Query: 170 VRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + S + + +G + G LE SN + E+ MI + + + + Sbjct: 325 KPESGNVYSQGVDSGVIITGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANS 384 Query: 225 TLIDENEKSMLEAIR 239 + + + + Sbjct: 385 KVFQTGSELLEVLVN 399 >gi|317177302|dbj|BAJ55091.1| flagellar hook protein FlgE [Helicobacter pylori F16] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|317011083|gb|ADU84830.1| flagellar hook protein FlgE [Helicobacter pylori SouthAfrica7] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|297380070|gb|ADI34957.1| flagellar hook protein FlgE [Helicobacter pylori v225d] gi|315586465|gb|ADU40846.1| flagellar hook protein FlgE [Helicobacter pylori 35A] gi|317182178|dbj|BAJ59962.1| flagellar hook protein FlgE [Helicobacter pylori F57] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|188527285|ref|YP_001909972.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|188143525|gb|ACD47942.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|308062194|gb|ADO04082.1| flagellar hook protein FlgE [Helicobacter pylori Cuz20] Length = 718 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|150390478|ref|YP_001320527.1| hypothetical protein Amet_2716 [Alkaliphilus metalliredigens QYMF] gi|149950340|gb|ABR48868.1| protein of unknown function DUF1078 domain protein [Alkaliphilus metalliredigens QYMF] Length = 441 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 15/140 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDI 52 M S ++ A + R+ + +N++N +TVG++ +V F EV Sbjct: 1 MMRSMFSAVSGLQAHQLRMDAIGNNIANVNTVGYKGTRVTFQEVFSQTIRGAGAPQGGRG 60 Query: 53 DQKISFVASGKEYLSKEV----GSFISTGTELDFALEGDAWFALES---PRGIILTRDGR 105 V G S GS STG D + GD +F + S + TR G Sbjct: 61 GTNPQQVGLGVNVASMSTFHVRGSAESTGYNTDLMINGDGFFIVSSDANDQNHTYTRAGN 120 Query: 106 FKVTDDGSLVSASGKYPVLD 125 F++ + G+L++ G+ + + Sbjct: 121 FELDEAGNLITPGGQRVMGN 140 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query: 135 QKDEIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENS------GISPNIPP 183 E F + G I+ G + I + + + G + + + Sbjct: 324 GNLEDFTIDSSGVITGVFNNGYKRPIGQVAIANFRNPAGLEKIGENMYRNSPNSGEPLVG 383 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TP G T+ G LE SN + E MI + F + + +I +++ + E + Sbjct: 384 TPGSGGRG-TLNPGTLEMSNVDLSREFTNMITTQRGFQANSRIITTSDEMLQEVVN 438 >gi|222823151|ref|YP_002574724.1| flagellar hook protein FlgE [Campylobacter lari RM2100] gi|222538372|gb|ACM63473.1| flagellar hook protein FlgE [Campylobacter lari RM2100] Length = 814 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 15/141 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDI 52 M S G++ A + + +N++N +T GF+ + FS ++ N Sbjct: 1 MMRSLWAGVSGLQAHQYAMDVEGNNIANVNTFGFKYSRADFSTLMSQTSKIATAPDGNLG 60 Query: 53 DQKISFVASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 + V G S G+ +T D A+ GD +F + + G TR G F Sbjct: 61 GKNPMQVGLGAGVNSTTRIHSQGNIQTTDKNTDMAINGDGFFIVSNDGGTTQFFTRAGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMA 127 K G+ V +G Y V Sbjct: 121 KTDAVGNFVDNNG-YTVQGWN 140 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYE 209 +A + L + + G N+ + +K +E SN + Sbjct: 722 LAKVALATFPNNMGLEEMGNNLYKATANSGTATIGHAGEGGRGGLKGSAIEMSNVDLSRA 781 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++I + + + + + I +++ + ++ Sbjct: 782 LTELIVIQRGYQANSKTITTSDQLLNTLLQ 811 >gi|308184654|ref|YP_003928787.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] gi|308060574|gb|ADO02470.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] Length = 718 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|210135063|ref|YP_002301502.1| flagellar hook protein FlgE [Helicobacter pylori P12] gi|210133031|gb|ACJ08022.1| flagellar hook protein [Helicobacter pylori P12] Length = 718 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|109947758|ref|YP_664986.1| flagellar hook protein FlgE [Helicobacter acinonychis str. Sheeba] gi|109714979|emb|CAJ99987.1| flagellar hook protein [Helicobacter acinonychis str. Sheeba] Length = 718 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|218703525|ref|YP_002411044.1| lateral flagellar hook FlgE-like protein [Escherichia coli UMN026] gi|293403355|ref|ZP_06647446.1| flgE [Escherichia coli FVEC1412] gi|300900359|ref|ZP_07118535.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] gi|218430622|emb|CAR11488.1| Lateral flagellar hook protein (FlgE-like) [Escherichia coli UMN026] gi|291429208|gb|EFF02228.1| flgE [Escherichia coli FVEC1412] gi|300356127|gb|EFJ71997.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] Length = 400 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 12/131 (9%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 V+ + +Q+ +++ GE +G+V+ L + G Sbjct: 273 VTTNSANGYASATQNGVQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLTSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|33592479|ref|NP_880123.1| flagellar hook protein FlgE [Bordetella pertussis Tohama I] gi|33572125|emb|CAE41667.1| flagellar hook protein FlgE [Bordetella pertussis Tohama I] gi|332381896|gb|AEE66743.1| flagellar hook protein FlgE [Bordetella pertussis CS] Length = 473 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 24/206 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K+S + Sbjct: 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALE-GDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG-- 119 VG+ +TG E D A++ G +F L G+ +R+G F V + +V+A G Sbjct: 60 ---RFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFR 116 Query: 120 --KYPVLDMASVPI--QIPQKD----EIFNVGEKGEISQKGKVIATM------GLYSVDM 165 YP + + P+ Q+PQ + G + ++ KVI GL +D Sbjct: 117 LTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPNDTPPEDGLVELDG 176 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSG 191 + + G + P PL+ Sbjct: 177 TT-YRFTNAGGTFAWVAPAPLDGTYN 201 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 +VG+ G + + + I T+ L + + QG N+ P + Sbjct: 362 LSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTN 421 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ LE SN + E+ MI + + + I ++ M + Sbjct: 422 GL-ATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMN 471 >gi|254496887|ref|ZP_05109735.1| flagellar hook protein FlgE [Legionella drancourtii LLAP12] gi|254353906|gb|EET12593.1| flagellar hook protein FlgE [Legionella drancourtii LLAP12] Length = 437 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 2/141 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVASG 62 F+ G++ A L + +N++N+ TVGF+ + F ++ G + V Sbjct: 3 FDTGISGLQAASNNLDVIGNNIANSSTVGFKGSRANFGDIYSFGGYGSSGTTPGGGVMLT 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 S G+ ST LD A+ G+ +F L + +R G+F + +D + ++SG++ Sbjct: 63 SIQQSFASGTMTSTNNTLDLAISGNGFFILNNQGATSYSRAGQFTLNNDNYITNSSGQFL 122 Query: 123 VLDMASVPIQIPQKDEIFNVG 143 +A I V Sbjct: 123 TGYLADAAGNITGASGNIQVN 143 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----EDL 189 V G IS G+ + + L + G N + Sbjct: 326 LQVDAAGVISGSYSNGQTLAMGQIQLANFADLNGLQNIGNVCWTATATSGQALIGTGGTG 385 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S T+ G LE+SN + E+ +I + F + I + I Sbjct: 386 SFGTLLSGRLEESNVDITSELVDLIGAQRDFQANAQTIRAGDTITQTIIN 435 >gi|300817270|ref|ZP_07097488.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|307313519|ref|ZP_07593140.1| fagellar hook-basal body protein [Escherichia coli W] gi|300530246|gb|EFK51308.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|306906687|gb|EFN37198.1| fagellar hook-basal body protein [Escherichia coli W] gi|315059542|gb|ADT73869.1| flagellar hook protein [Escherichia coli W] gi|323171064|gb|EFZ56713.1| flgE [Escherichia coli LT-68] gi|323379899|gb|ADX52167.1| fagellar hook-basal body protein [Escherichia coli KO11] Length = 400 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDTGT 126 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|293408367|ref|ZP_06652206.1| conserved hypothetical protein [Escherichia coli B354] gi|291471545|gb|EFF14028.1| conserved hypothetical protein [Escherichia coli B354] Length = 400 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDSGT 126 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +++ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNSANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLTSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|220904530|ref|YP_002479842.1| hypothetical protein Ddes_1261 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868829|gb|ACL49164.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 808 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 5/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ L+ Q+++ V +N++N T+GF++ ++ F++ + A Sbjct: 6 SMWTSVSGLLSHGQKMNVVGNNIANVSTLGFKSQRMDFNDYLYRGIGTTSGPSQIGAGAS 65 Query: 64 EYL---SKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSAS 118 Y GS ST + D A++G+ +F + P + TR G F D L + Sbjct: 66 VYAILGDFSQGSLESTNSVTDLAIDGNGFFQVRKPNSKQMYYTRAGDFYFNKDRELQNPE 125 Query: 119 GKY 121 G Sbjct: 126 GYL 128 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 16/114 (14%) Query: 138 EIFNVGEKGE---ISQKGKVIA--TMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG 191 N+ G I GK I + LY QG R + + N P ++G Sbjct: 694 SNVNIDNGGVVYGIYSNGKTIPLYQIALYDFQNHQGLYREGGNLFSATNDSGEPQLGVAG 753 Query: 192 VTVKRGF-------LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 GF +E SN + E QMI + F + + I + + I Sbjct: 754 DN---GFGKTKAYNIEQSNVDMTTEFVQMISTQRGFQANSKGITTVDTMLETVI 804 >gi|302878276|ref|YP_003846840.1| fagellar hook-basal body protein [Gallionella capsiferriformans ES-2] gi|302581065|gb|ADL55076.1| fagellar hook-basal body protein [Gallionella capsiferriformans ES-2] Length = 498 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 SF GL+ + L T+ +N++N TVGF+ + +F+++ A + + Sbjct: 2 SFQQGLSGLNGASRHLDTIGNNVANASTVGFKQSQAQFADMFAASLSGSGAMPIGTGTKL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 G+ +T LD A+ G +F L G ++ +R+G+F+V G++V+ G Sbjct: 62 VAVAQQFTQGNITNTNNPLDTAISGQGFFRLTDAAGAVLYSRNGQFQVDKTGNVVNNQGH 121 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 11/109 (10%) Query: 143 GEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVT--- 193 G G I G+ + + L + QG N+ + + +P G + Sbjct: 390 GTDGTILGRYSNGQSRALGQITLTNFINPQGLQPVGNNEWVETSASGSPTTGTPGSSSLG 449 Query: 194 -VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ EDSN + E+ MI + + + I + S+L+ I ++ Sbjct: 450 MLQASATEDSNVDLTAELVNMITAQRVYQANAQTIKTQD-SLLQTITSL 497 >gi|208434779|ref|YP_002266445.1| flagellar hook protein [Helicobacter pylori G27] gi|208432708|gb|ACI27579.1| flagellar hook protein [Helicobacter pylori G27] Length = 718 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|332673326|gb|AEE70143.1| flagellar hook protein FlgE [Helicobacter pylori 83] Length = 718 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|260466603|ref|ZP_05812791.1| flagellar basal body FlaE domain protein [Mesorhizobium opportunistum WSM2075] gi|259029609|gb|EEW30897.1| flagellar basal body FlaE domain protein [Mesorhizobium opportunistum WSM2075] Length = 418 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLST ADN++N+DT G++ +FS ++ Sbjct: 6 MMR---TGVSGMNAQANRLSTTADNIANSDTTGYKRSSAEFSTLIMPSTGGAYNSGGVTT 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + ++ +S + G T + D A+ GD +F ++ P G TR G F G LV+A+G Sbjct: 63 TIRQAVS-DPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPYLTRAGAFVPDAQGRLVNAAG 121 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 54/211 (25%), Gaps = 28/211 (13%) Query: 39 VKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI 98 F + + + G T P + Sbjct: 223 AVFDQSKATAGTSFPYTGGALGTANLTFDTTTGKLTGT------------------PTSV 264 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GK 153 T G + D S ++ G + A V P + + + G I + K Sbjct: 265 SFTVPGGASLNLDLSTLTQLGTGFTVSDAQVNGNAPSAIDKVQISKDGTIYAQYKDGTSK 324 Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMY 208 + + L V + + + ++ G LE+SN + Sbjct: 325 PLYKIPLADVQSPDQLKALPGNVYAQGTDSGAVRVGFANEGKAGSIISGALENSNVDIAE 384 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ MI + + + + + M + Sbjct: 385 ELTDMIAAQRSYTANSKVFQTGSDLMDVLVN 415 >gi|90415318|ref|ZP_01223252.1| flagellar hook protein FlgE [marine gamma proteobacterium HTCC2207] gi|90332641|gb|EAS47811.1| flagellar hook protein FlgE [marine gamma proteobacterium HTCC2207] Length = 944 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF L A +L+ ++N++N+ T GF+ F ++ + + Sbjct: 2 SFYTSLTGLNAATTQLAVTSNNIANSGTGGFKRSDTDFGDIFATSPLEKASSVVGRGVSL 61 Query: 64 EYLS--KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 + +S G+ + LD A+ GD +F LES G I TR+G F + + +V+++G+ Sbjct: 62 KEVSQEFSQGNIEFSANSLDLAITGDGFFPLESSDGTKIYTRNGAFMLNEQNQMVNSAGQ 121 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 13/118 (11%) Query: 134 PQKDEI-FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIP----- 182 P+ D + N+G+ G + G + + L + +G + ++ Sbjct: 825 PEGDLVGVNIGDDGLVVASYSNGSQKSLGKIILANFATPKGLRQVGDTSYYATSVSGDAN 884 Query: 183 -PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P G T++ G E SN + E+ +I + F + I+ + I+ Sbjct: 885 LGEPGAAGFG-TIRAGARERSNVDLTAELVDLITAQRNFQANAKAIETSSSLTQTIIQ 941 >gi|323191538|gb|EFZ76799.1| flgE [Escherichia coli RN587/1] Length = 400 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAG-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F +S I TR G F+ +G +V+ASG Sbjct: 57 AQSISRGGSLVSTGNALDLAINNDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGDYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDSGT 126 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 +A+ Y +Q+ +++ GE +G+V+ L + G Sbjct: 275 TNAANGYASATQNG--VQVDDDGKVYATYSNGERMLQGQVV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL + G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|260901953|ref|ZP_05910348.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] gi|308106765|gb|EFO44305.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] Length = 437 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 17/148 (11%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F++V N + + Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P+ +TR+G F + + +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEMTRNGAFHLNKENYMVTAND 122 Query: 120 ----KYPVLDMAS-------VPIQIPQK 136 Y V + PI IP + Sbjct: 123 EFLLGYQVNPESGEVSSYEPQPINIPAE 150 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ + + L V QG ++ + E Sbjct: 324 TKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESN 383 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 384 KGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435 >gi|296274022|ref|YP_003656653.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] gi|296098196|gb|ADG94146.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] Length = 487 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L+ A + ++N++N +T+ + ++ F++ + + V Sbjct: 1 MNGSLYNSLSGIYAASNYVDVASNNIANINTIAHKEDRISFADQMYQ-----NGIGKGVG 55 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSAS 118 +G S G T + DFA++G +F L P TR G F ++DG+LV+A Sbjct: 56 AGTVNKSFRQGDVKDTNNQYDFAIQGKGFFILTDPETNLTYYTRAGNFTKSNDGTLVNAQ 115 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEK 145 G V+ + + I D G+ Sbjct: 116 G-LDVMGLQTKVISTTSSDGTIIFGDN 141 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 5/110 (4%) Query: 135 QKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 D F+V G + + Q ++ + ++ Sbjct: 374 NDDTDFSVTSDGILLLTQGSNTYIAGRISTAYFPDEQSLNPEGDNLYTQTKESGEAKNAD 433 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + TV +E SN N + ++I + F + + I ++ + AI+ Sbjct: 434 TLNTVVSHSVEASNINVATALTKLIIAQRAFEASSKAITTSDSFLDTAIK 483 >gi|296133040|ref|YP_003640287.1| fagellar hook-basal body protein [Thermincola sp. JR] gi|296031618|gb|ADG82386.1| fagellar hook-basal body protein [Thermincola potens JR] Length = 419 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 12/134 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + R+ + +N++N +T+G++ + F +++ + Sbjct: 1 MMRSMFAGVSGLRNHQVRMDVIGNNIANVNTIGYKKARATFQDILSQNIRGASSPTATRG 60 Query: 61 SGKEY------------LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 GS +TG D ++GD +F + TR G F Sbjct: 61 GTNPMQVGLGMTINTIDTIHTQGSSETTGKVTDMMVDGDGFFIVGDGTNRFYTRAGNFDF 120 Query: 109 TDDGSLVSASGKYP 122 G+L++ SG Sbjct: 121 DAVGNLINTSGLLV 134 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT- 193 + + G I+ + K +A + L + + G ++ + + + + + T Sbjct: 307 YAIDSSGVITGQFSNGLTKQLAQVALANFNNPAGLMKVGGNLFTQSNNSGNAQIGAAGTG 366 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E MI + F + + +I +++ + E + Sbjct: 367 GRGEISPGKLEMSNVDLSQEFTDMIITQRGFQANSRIITVSDEMLQELVN 416 >gi|217034494|ref|ZP_03439905.1| hypothetical protein HP9810_873g10 [Helicobacter pylori 98-10] gi|216943035|gb|EEC22514.1| hypothetical protein HP9810_873g10 [Helicobacter pylori 98-10] Length = 718 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MIRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIISPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|289679022|ref|ZP_06499912.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. syringae FF5] Length = 151 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 13/153 (8%) Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------- 149 G TR + G L SG PV+ PI +P + + +G G IS Sbjct: 1 GEAYTRSSGMNIDALGVLRDGSG-LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGES 57 Query: 150 -QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 Q + + L D+ + + G+ P + + V V+ GFL+ SN N++ Sbjct: 58 PQVMAQVDRIKLVRPDLKT--MEKGPDGLIHTKTGRPADADATVQVESGFLQASNVNAVE 115 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ L+++F ++ E+ R + Sbjct: 116 EMTSVLALSRQFELHVKMMKTAEEDDQSMARVL 148 >gi|57505769|ref|ZP_00371695.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57016042|gb|EAL52830.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 545 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +F G++ + A+N++N +T GF+ +F ++ + + Sbjct: 1 MMGAFYNGISGVKINSFGIDISANNIANVNTTGFKYSNAEFKDIFYSTITSQSTNPAQGG 60 Query: 61 SGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 G S E GS +++ E D AL+G +F + G+ TR+G FK +G LV Sbjct: 61 YGSTSASSKLVFEQGSPVASEGEFDVALQGKGFFGVLGADGMPYYTRNGAFKRDANGHLV 120 Query: 116 SASGKYPVLDMA 127 + G + + M Sbjct: 121 DSYGNFVLGTMN 132 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 12/112 (10%) Query: 140 FNVGEKGEISQ---KGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTP-------LE 187 + +G+ GE+ G+ ++ + LY+ QG + ++ + E Sbjct: 431 YRIGDGGELIAQFSNGQTAIVGKIALYNFINEQGLMAMGDNIFAATGNSGEASFIMKDGE 490 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ K GFLE SN N E+ +I + F++ + I +++ + +AI Sbjct: 491 IVNTAKFKGGFLEQSNVNLSMELSNLIVTQRAFDASSKSITTSDQMIQKAIN 542 >gi|83718065|ref|YP_438389.1| flagellar hook protein flgE [Burkholderia thailandensis E264] gi|167614837|ref|ZP_02383472.1| flagellar hook protein flgE [Burkholderia thailandensis Bt4] gi|257141422|ref|ZP_05589684.1| flagellar hook protein flgE [Burkholderia thailandensis E264] gi|83651890|gb|ABC35954.1| flagellar hook protein flgE [Burkholderia thailandensis E264] Length = 395 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L+T++ N++N +T GF+ + F+ +V + + S S Sbjct: 2 SFNIALSGINAINSQLNTISHNIANANTYGFKAGRANFATMVAGTQANGTYIGSITQSVG 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 G F+ TG LD A++G+ +F + G + TR G F+ DG +V G+ Sbjct: 62 TR-----GGFLPTGRALDGAIDGNGFFVTKDSDGSMLFTRFGYFQRDADGYIVDGFGRRA 116 Query: 123 VL---DMASVPIQIPQKDEI 139 A I++P E Sbjct: 117 QGYGTGGAYGDIRVPTDTEP 136 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 15/142 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKD-----EIFNVGEKGEI---SQKGKV--IATMGLYSVD 164 V+ +G V + + + E G + GK + ++ L + Sbjct: 254 VNYAGTTQVAGETTTTVNRDNGYAAGVPGEVTLDEDGGVVVQYSNGKQRKVGSLALATFA 313 Query: 165 MSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 G ++ + PL +G V G LE SNA+ E+ M+ + Sbjct: 314 NQDGLTAVGDTAWRASAASGNPLIGSAGSGALGKVVAGSLELSNADVTKELVDMMSAQRN 373 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + + ++ + M ++ + Sbjct: 374 YQANSKVLSTENQMMQALMQAL 395 >gi|600725|gb|AAA92803.1| flagellar hook FlgE [Helicobacter pylori] Length = 718 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + L ++N++N +T GF+ + F +++ + Sbjct: 1 MLRSLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSRASFVDMLSQVKLIATAPYKNGL 60 Query: 49 --KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDG 104 +ND + V G+ +T + D A++GD +F + RGI TRDG Sbjct: 61 AGQNDFSVGLG-VGVDATTKIFSQGNIQNTDVKTDLAIQGDGFFIINPDRGITRNFTRDG 119 Query: 105 RFKVTDDGSLVSASG 119 F GSLV+ G Sbjct: 120 EFLFDSQGSLVTTGG 134 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 626 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 685 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 686 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 715 >gi|311694361|gb|ADP97234.1| flagellar hook protein FlgE [marine bacterium HP15] Length = 632 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 10/186 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 +FN GL+ A L +N++N TVGF+ K +F ++ + + + V Sbjct: 2 AFNTGLSGLRAASVDLDVTGNNIANASTVGFKGSKAQFGDLYASGFLSAGTNPIGDGVRV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 S G+ T LD A+ GD +F L + I +R G+F + +G V+ + Sbjct: 62 QDVKQSFGQGNISFTDNGLDMAIAGDGFFILNNGGEIRYSRAGQFGIDKEGY-VTNNQNM 120 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 V + + + +I+ +A ++D RE+ + Sbjct: 121 RVQGY-----TADEDGNLSGIRGDLQIATDN--LAPRRTTNLDSDLNLDSRESVLETRVR 173 Query: 182 PPTPLE 187 PL Sbjct: 174 DVGPLT 179 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSM 207 + + + L S + + G + S + P+ ++K +E+SN + Sbjct: 539 QALGQVALASFNNTNGLSPVGDTSWVETFESGQPIIGAPDTGTLGSIKASSVEESNVDLS 598 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + + I+ ++ I Sbjct: 599 AELVNLIIAQRNYQANAKTIETSDAVTQTIIN 630 >gi|197285510|ref|YP_002151382.1| flagellar hook protein FlgE [Proteus mirabilis HI4320] gi|227356001|ref|ZP_03840393.1| flagellar hook protein [Proteus mirabilis ATCC 29906] gi|194682997|emb|CAR43446.1| flagellar hook protein [Proteus mirabilis HI4320] gi|227163989|gb|EEI48891.1| flagellar hook protein [Proteus mirabilis ATCC 29906] Length = 406 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 20/163 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L T+ +N+SN+ T GF+ V F++V + K+S ++ Sbjct: 2 SFSQAVSGLNAAAANLDTIGNNISNSATYGFKGATVSFADVFAGSGAGLGVKVSGISQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 + + GS +T D A+ G +F +E G+ +R+G F +G L + G Sbjct: 60 ---NFKDGSITTTNRPTDVAISGGGFFRIEDSNGGVFYSRNGEFGKDKNGYLTNMQGMRI 116 Query: 120 -KYPVLDMAS----------VPIQIPQKDEIFNVGEKGEISQK 151 YPV ++ PI IP + +K +++ Sbjct: 117 TGYPVQNVDGKNVVQKGATPTPIIIPTDMMNASATDKMDMTVN 159 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSG 191 F + G I +Q+ +V+ + L + G + ++ N +P+ ++G Sbjct: 293 TNFRIEPDGSIMATYSNQQSQVVGQIALANFANPGGLSSQGDNMWSETNGSGSPIVGVAG 352 Query: 192 VTV----KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V LE SN + E+ MI + + S I ++ + + Sbjct: 353 SGVFGKLTNNALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLV 403 >gi|330818585|ref|YP_004362290.1| flagellar hook protein FlgE [Burkholderia gladioli BSR3] gi|327370978|gb|AEA62334.1| flagellar hook protein FlgE [Burkholderia gladioli BSR3] Length = 414 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 66/155 (42%), Gaps = 8/155 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQKISF 58 + GL+ L + +N++N +T GF+ +F+++ A+ N I Sbjct: 2 GYQQGLSGLQGASNDLDVIGNNIANANTTGFKAATAQFTDMYANSVSSAVANGIGIGTQL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 A + + + G F +T L+ A+ G+ +F + + TRDG F +G++V+A+ Sbjct: 62 AAVAQVF---QQGGFTTTQNPLNMAINGNGFFQVTNNGVTTYTRDGTFNADKNGNIVNAA 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 G + + I + +G ++ K Sbjct: 119 GAQLMGYAVNANGVINTGALVPLTAPQGNLAPKAT 153 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 ++VG G I + + + + + + QG + I + P + G Sbjct: 302 NSYSVGADGTIQGIYSNNQTLTLGQVVVVNFNNPQGLTSIGGNQYIQTSASGVPQVGVPG 361 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T +K E S + E+ +I + + + I + I Sbjct: 362 STNHGTLKGSTTEASTTDLTGELVNLITAQRDYQANAQTIKTQQAVDQTLIN 413 >gi|307318929|ref|ZP_07598360.1| fagellar hook-basal body protein [Sinorhizobium meliloti AK83] gi|306895343|gb|EFN26098.1| fagellar hook-basal body protein [Sinorhizobium meliloti AK83] Length = 402 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A RLSTVA+N++N +T G++ +FS ++ N V + Y Sbjct: 9 TGVSGMNAQSNRLSTVAENIANANTTGYKRASTEFSSMILPSGNGSYNS-GGVQTEVRYS 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + G+ T + D A++G +F +E G TR G F +G+LV+A+G Sbjct: 68 ISQQGATTFTTSASDLAIDGGGFFIVEGANGQEYLTRAGSFVPDSEGNLVNAAG 121 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 10/135 (7%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK-----VIATMGLYSVDMSQGF 169 + G D ++ P K + + G + K + + L +V Sbjct: 265 TTQLGYAFNADGGNIDGNAPSKVAGYQIDSDGIVYVKYENGKLDPRYRIALANVQSPDKL 324 Query: 170 VRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 + S + + +G + G LE SN + E+ MI + + + + Sbjct: 325 RPESGNVYSQGVDSGVIITGFAGSGDFGEILSGALESSNVDIAEELTAMIESQRNYTANS 384 Query: 225 TLIDENEKSMLEAIR 239 + + + + Sbjct: 385 KVFQTGSELLEVLVN 399 >gi|302343058|ref|YP_003807587.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] gi|301639671|gb|ADK84993.1| fagellar hook-basal body protein [Desulfarculus baarsii DSM 2075] Length = 452 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 22/214 (10%) Query: 1 MQ-TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA----IKNDIDQK 55 MQ TSF G++ + Q L+ VADN++N++T G+++ + +F++V+ +D+ + Sbjct: 1 MQATSFFNGVSGLKSFSQGLNIVADNLANSNTYGYKSSRAEFADVLYRELSYTGSDLTTE 60 Query: 56 ISFVASGKEYLSKE---VGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVT- 109 I V G S + G+ TG LD A++G+ +F +++ TR G+F V Sbjct: 61 IDQVGQGATVWSHQLMNQGAIQETGRTLDLAIDGNGFFTVKNLDTEELYYTRAGQFGVDG 120 Query: 110 ---DDGSLVSASGKYP---VLDMASVPIQIPQKDEIFNV----GEKGEISQKGKVIATMG 159 +G +++ G + PI D V GE I G + Sbjct: 121 VVGQEGFIINDQGYRLQGFAIGDDGEPIVGNLIDLQIPVENLPGEATTIVGLGVNLNPAD 180 Query: 160 LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 V+ + E SG T + D +G T Sbjct: 181 -TRVNQVATDIDPEVSGTYNYSSSTTVYDANGDT 213 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPL------ 186 E V E G ++ G+++ + L + R ++ + + + Sbjct: 336 ESVAVSEDGFVTAYYSNGEMVDVGVVALTTFASPGNLRREGDNLWAYDADAGEIWVGQPT 395 Query: 187 -EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ + ++ LE S ++ EM MI + F + + + +++ + AI Sbjct: 396 DEEFAMGAIEDQSLETSTVDTATEMMNMIIYQRAFQASSKTVTTSDEMIKTAIN 449 >gi|255323598|ref|ZP_05364728.1| flagellar hook protein FlgE [Campylobacter showae RM3277] gi|255299312|gb|EET78599.1| flagellar hook protein FlgE [Campylobacter showae RM3277] Length = 756 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 14/134 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN--------DI 52 M S G+ A + + +N++N +TVG++ + F +++ Sbjct: 1 MMRSLWSGVTGLQAHQIAMDVEGNNIANVNTVGYKYNRANFDDLIYQTSRIATAPQNQHG 60 Query: 53 DQKISFVASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRF 106 V G + S GS +T + D AL+GD +F + S G TR+G F Sbjct: 61 GVNNMEVGLGTQINSTTRIFKQGSLQTTDKQTDIALQGDGFFMVSSDGGKTTYYTRNGDF 120 Query: 107 KVTDDGSLVSASGK 120 +G+ V G Sbjct: 121 SRDSEGNFVDNGGN 134 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPT-----PLEDL 189 + + G + G+ +A +G+ +QG + S + Sbjct: 645 IRIDQSGTLVGSFTNGRSLGLAQVGVAKFANNQGLAGEGGNLFSRTANSGDPIIGAAQTA 704 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + + Q+I + + F + + I +++ + ++ Sbjct: 705 GRGKISASSLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDEMLNTLLQ 754 >gi|170703096|ref|ZP_02893916.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria IOP40-10] gi|170131993|gb|EDT00501.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria IOP40-10] Length = 413 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + GL+ L + +N++N +TVGF++ +FS++ + +G Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTGL 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + ++ G+ +T + LD A+ G+ +F + + +RDG F+ +G +V + G+ Sbjct: 62 ASVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRN 121 Query: 122 PV------LDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYTAGSGGVINTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS----GISPNIPPTPLED 188 +++G G+++ V+ + L + + G V + + +P Sbjct: 301 TTYSIGADGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYAESSASGVPQISAPG 360 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGVLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|330953723|gb|EGH53983.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 581 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 21/214 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVAS 61 SFN ++ A +RL +N++N T+GF++ + +FS + + + Q V Sbjct: 2 SFNTAISGIQAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 62 GKEYLSKEVG-SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG- 119 + G + IS+G LD ++G+ +F + + TR G F +V + G Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 120 ---KYPVLDMASVP--IQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSVDMS 166 Y D + I+ + + NVG + + +A + + D Sbjct: 122 RLQGYAANDKGEIASGIRTDLQIDTSNVGARATTRVAETINLDASLPSLARLPTFDPDNP 181 Query: 167 QGFVRRENSGISP-NIPPTPLEDLSGVTVKRGFL 199 + R I I P P D +K+ F+ Sbjct: 182 ATYTRVATRTIQDVGITPVPAADHE---LKQYFV 212 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLSG 191 + +VG G + K I + L S G R + + D+ G Sbjct: 468 KSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQPRSDTRWTATADSGVAEYDVPG 527 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V + G LE SN E+ +I + + + I M I++ Sbjct: 528 VGTLGGIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 580 >gi|213616339|ref|ZP_03372165.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 187 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIPNT 142 >gi|172061972|ref|YP_001809624.1| flagellar hook protein FlgE [Burkholderia ambifaria MC40-6] gi|171994489|gb|ACB65408.1| flagellar basal body FlaE domain protein [Burkholderia ambifaria MC40-6] Length = 413 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + GL+ L + +N++N +TVGF++ +FS++ + +G Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTGL 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + ++ G+ +T + LD A+ G+ +F + + +RDG F+ +G +V + G+ Sbjct: 62 ASVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRN 121 Query: 122 PV------LDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYTAGSGGVINTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS----GISPNIPPTPLED 188 +++G G+++ V+ + L + + G V + + +P Sbjct: 301 TTYSIGADGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYAESSASGVPQISAPG 360 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGVLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|86157813|ref|YP_464598.1| hypothetical protein Adeh_1387 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774324|gb|ABC81161.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 428 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 5/123 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA- 60 T+ + G A LS V DN++N +TVGF++ + F + + ++ A Sbjct: 4 LTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQTVIGGSGQVGLGAR 63 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLVS 116 G+ STG D AL+G+ +F + G TRDG+F V DDG LV+ Sbjct: 64 LAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGYLVN 123 Query: 117 ASG 119 G Sbjct: 124 LEG 126 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPL----ED 188 VG +G IS + +V+ + + R + + P+ Sbjct: 315 SVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLLQQTPGSGQPVVGAAGA 374 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ G LE SN + + ++I + F + + I ++ + E I Sbjct: 375 GGRASIVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSELI 424 >gi|94312669|ref|YP_585878.1| flagellar hook protein [Cupriavidus metallidurans CH34] gi|93356521|gb|ABF10609.1| flagellar hook protein [Cupriavidus metallidurans CH34] Length = 415 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 15/140 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F G++ A L + +N++N +TVGF+ +F++V K + +++ V Sbjct: 2 GFGQGVSGLNAAASNLDVIGNNIANANTVGFKQSTAQFADVYAGSKIGLGTRVNSV---- 57 Query: 64 EYLSKEVGSFISTGTELDFAL-EGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG-- 119 S G+ STG LD A+ G+ +F L + G+ +R+G+F+ DDG LV+ASG Sbjct: 58 -VQSFTNGNISSTGRNLDVAISNGNGFFRLASTDGGVYYSRNGQFQRLDDGRLVNASGLQ 116 Query: 120 --KYPVLDMAS----VPIQI 133 YP A PI I Sbjct: 117 VTGYPAGTTAGGVAPQPIVI 136 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 9/109 (8%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 F+V G I +++ K + + + + ++G N+ + L ++G Sbjct: 306 FSVQSDGTILGSFSNEQTKSLGQIAMAAFGNAEGLKPEGNNVWSATGASGQELLGVAGGS 365 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ G +E+SN + ++ +I + + + I + M + Sbjct: 366 MGTLQSGSVEESNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVN 414 >gi|197122873|ref|YP_002134824.1| hypothetical protein AnaeK_2470 [Anaeromyxobacter sp. K] gi|196172722|gb|ACG73695.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter sp. K] Length = 428 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVA 60 T+ + G A LS V DN++N +TVGF++ + F + + + Q Sbjct: 4 LTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQSVIGGTGQIGLGSR 63 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLVS 116 G+ STG D AL+G+ +F + G TRDG+F V DDG LV+ Sbjct: 64 LAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGYLVN 123 Query: 117 ASG 119 G Sbjct: 124 LEG 126 Score = 73.5 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG- 191 VG +G IS + +V+ + + R + + P+ +G Sbjct: 315 SVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLLQQTPGSGQPVVGAAGS 374 Query: 192 ---VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +V G LE SN + + ++I + F + + I ++ + E I Sbjct: 375 GGRASVVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSELI 424 >gi|289679027|ref|ZP_06499917.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 377 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 21/214 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVAS 61 SFN ++ A +RL +N++N T+GF++ + +FS + + + Q V Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 62 GKEYLSKEVG-SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG- 119 + G + IS+G LD ++G+ +F + + TR G F +V + G Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 120 ---KYPVLDMASVP--IQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSVDMS 166 Y D + I+ + + NVG + + + +A + + D Sbjct: 122 RLQGYAANDKGEIASGIRTDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDPDDP 181 Query: 167 QGFVRRENSGISP-NIPPTPLEDLSGVTVKRGFL 199 + R I I P P D +K+ F+ Sbjct: 182 ATYTRVATRTIQDVGITPVPAADHE---LKQYFV 212 >gi|121601827|ref|YP_989383.1| flagellar hook protein FlgE [Bartonella bacilliformis KC583] gi|120614004|gb|ABM44605.1| flagellar hook protein FlgE [Bartonella bacilliformis KC583] Length = 404 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 + ++ A +RLS +A+N++N TVG++ V+FS V D V S Sbjct: 7 MHTSVSGMNAQGKRLSGIAENVANAGTVGYKRTNVQFSNYVTP-SGDYAYVPGGVKSHVG 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 + G +TG D + G+ +F +E G LTR G F DG L ++SG Y + Sbjct: 66 HDISIYGPARATGRPGDAMINGNGFFRVEDENGNEFLTRAGSFSRDKDGYLRNSSGHY-L 124 Query: 124 LDMASVPIQI 133 L+ IQI Sbjct: 125 LNDEGQRIQI 134 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 13/137 (9%) Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQG 168 LV+ G + + +++ D F G+ GE+ +QK +VI+ +GL +V + Sbjct: 267 LVTQKGNSYAFEAEANGMEVGSFDG-FTFGKNGEVEVKYTNQKTRVISYVGLATVTSPES 325 Query: 169 F------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 V + N+ + P + + G ++ G+LEDSN E+ MI + + + Sbjct: 326 LTVLSGTVFQTNTRTGAQMVGRPGDGVFG-SLTAGYLEDSNVEMSEELTDMIESQRNYTA 384 Query: 223 ITTLIDENEKSMLEAIR 239 + + + M + Sbjct: 385 NSKVFQTGSELMDVIVN 401 >gi|325529014|gb|EGD06027.1| flagellar hook protein FlgE [Burkholderia sp. TJI49] Length = 413 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVAS- 61 + GL+ L + +N++N +TVGF++ +FS++ +I ++ +I + Sbjct: 2 GYEQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTTL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + + TRDG F+ +G +V+A G Sbjct: 62 ASVQQQFGQGAINATSSSLDVAINGNGFFQMSNNGAMTYTRDGTFQRDKNGYIVNAQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAADKNGVINTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F +G G+++ + + L + + G V + + P G Sbjct: 301 TTFTIGNDGKVTGNYSNGQTATLGQIALANFNNPNGLVNIGGNQYVETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|330945585|gb|EGH47092.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. pisi str. 1704B] Length = 153 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 13/153 (8%) Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS------- 149 G TR + G L SG PV+ PI +P + + +G G IS Sbjct: 3 GEAYTRSSGMNIDALGVLRDGSG-LPVMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGES 59 Query: 150 -QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 Q + + L D+ + + G+ P + + V V+ GFL+ SN N++ Sbjct: 60 PQVMAQVDRIKLVRPDLKT--MEKGPDGLIHTKTGRPADADATVQVESGFLQASNVNAVE 117 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ L+++F ++ E+ R + Sbjct: 118 EMTSVLALSRQFELHVKMMKTAEEDDQSMARVL 150 >gi|86146155|ref|ZP_01064481.1| flagellar hook protein [Vibrio sp. MED222] gi|218708804|ref|YP_002416425.1| flagellar hook protein FlgE [Vibrio splendidus LGP32] gi|85836102|gb|EAQ54234.1| flagellar hook protein [Vibrio sp. MED222] gi|218321823|emb|CAV17792.1| Flagellar hook protein flgE [Vibrio splendidus LGP32] Length = 434 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 20/193 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V + N + + Sbjct: 3 YVSLSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTPGGGAQASQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P LTR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDRMVPEINELTRNGAFHLNKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDM 165 ++ VL A P+ IP + E E+ + + Sbjct: 123 EFLLGYDVDPNSGEVLSYAPKPLDIPAEFGKPKQTENIEVGVNLPANGDLKDPATFDFKD 182 Query: 166 SQGFVRRENSGIS 178 + R +S + Sbjct: 183 PDTYNRATSSTVY 195 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 5/94 (5%) Query: 151 KGKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDLSGV--TVKRGFLEDSNAN 205 + ++ +GL V G ++ + + E G ++ G LE SN + Sbjct: 339 ENVILGRVGLVRVPNEHGLDKKGGTQWDSTNASGDKIWGESNKGSFGSINNGSLEQSNID 398 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + F + + ++ + + ++ Sbjct: 399 MTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432 >gi|121613214|ref|YP_001001371.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 81-176] gi|167006263|ref|ZP_02272021.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 81-176] gi|30721660|gb|AAP34261.1| FlgE [Campylobacter jejuni subsp. jejuni 81-176] gi|87248993|gb|EAQ71955.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 81-176] Length = 838 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 22/206 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 K+ G+ V+ +G + V I + + + G I V + Sbjct: 121 KLDAYGNFVNNAG-FVVQGWN---INWDTQSIDSSRTPQNIFIDPGMHIPAAKSTEVAIK 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGV 192 NSG+S TP+ L V Sbjct: 177 ANL----NSGLSVGTAKTPIYGLDSV 198 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTP---LEDLSG 191 V +KG I GK +A M + SV + G + E +G Sbjct: 726 IRVDDKGNILGEFTNGKTFAVAKMAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTG 785 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 786 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 835 >gi|330899403|gb|EGH30822.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 581 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 21/214 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVAS 61 SFN ++ A +RL +N++N T+GF++ + +FS + + + Q V Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 62 GKEYLSKEVG-SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG- 119 + G + IS+G LD ++G+ +F + + TR G F +V + G Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 120 ---KYPVLDMASVP--IQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSVDMS 166 Y D + I+ + + NVG + + + +A + + D Sbjct: 122 RLQGYAANDKGEIASGIRTDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDPDDP 181 Query: 167 QGFVRRENSGISP-NIPPTPLEDLSGVTVKRGFL 199 + R I I P P D +K+ F+ Sbjct: 182 ATYTRVATRTIQDVGITPVPAADHE---LKQYFV 212 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLSG 191 + VG G + K I + L S G R + + D+ G Sbjct: 468 KSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQPRSDTRWTATADSGVAEYDVPG 527 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 528 VGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 580 >gi|238916755|ref|YP_002930272.1| flagellar hook protein FlgE [Eubacterium eligens ATCC 27750] gi|238872115|gb|ACR71825.1| flagellar hook protein FlgE [Eubacterium eligens ATCC 27750] Length = 464 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 15/134 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ A + R+ + +N++N +TV F++ + FSEV + Sbjct: 24 MMRSMYSAVSGLKAHQTRMDVIGNNIANVNTVAFKSQSMTFSEVFYQTTQTASGPNAESG 83 Query: 61 SGKEYLSK---------------EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGR 105 G + G+ T D + G A+F + S TR G Sbjct: 84 KGGTNAKQIGLGSSVGSISTSISTEGASERTDNAFDLKIGGSAFFIVNSAGNTFFTRAGN 143 Query: 106 FKVTDDGSLVSASG 119 FKV + G+LV+++G Sbjct: 144 FKVDESGALVTSAG 157 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 11/113 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--- 189 + G I K I + + + +G + + S + + + Sbjct: 349 TSVGIDNSGYIVASYSNGDTKNIGQIAVATFSNPEGLQKEGENLYSATLNSGSFDGIGED 408 Query: 190 ---SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S ++ G LE SN + E MI + + + + +I ++ + E I Sbjct: 409 VTTSDGSISSGVLEMSNVDLSSEFTNMITTQRGYQANSRIITVSDTLLEELIN 461 >gi|118475525|ref|YP_892884.1| flagellar hook protein FlgE [Campylobacter fetus subsp. fetus 82-40] gi|118414751|gb|ABK83171.1| flagellar hook protein FlgE [Campylobacter fetus subsp. fetus 82-40] Length = 911 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 14/134 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-------KNDID 53 M + G+ A + + DN++N +TVGF+ + F+++ + D+ Sbjct: 1 MMRALWAGVTGLQAHQIAMDVEGDNIANVNTVGFKYSRASFADLFSQTAKVATAPQGDLG 60 Query: 54 QKISF-VASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRF 106 K S + G + S + GS +T D A++GD +F + G TR+G F Sbjct: 61 GKNSMQIGLGTQINSVTKIFKQGSVQTTDKNTDLAIQGDGFFVVSPDGGKTYKYTRNGDF 120 Query: 107 KVTDDGSLVSASGK 120 G+ V +G Sbjct: 121 SRDSLGNFVDKNGY 134 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDL 189 V E G I G+ +A + L ++G + + Sbjct: 799 LRVDESGTIIGAFTNGRSFGLAQVALAKFTNNEGLESDGGNVFVQTANSGAPVIGSAQTA 858 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + + Q+I + + + + + I ++ + ++ Sbjct: 859 GRGKINASSLEMSNVDLSRSLTQLIVVQRGYQANSKTITTGDQMLNTLLQ 908 >gi|325291962|ref|YP_004277826.1| Flagellar hook protein FlgE [Agrobacterium sp. H13-3] gi|325059815|gb|ADY63506.1| Flagellar hook protein FlgE [Agrobacterium sp. H13-3] Length = 426 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A +L TV DN++N T G++ FS +V + V S Y Sbjct: 9 TGVSGMNAQANKLGTVGDNIANASTTGYKRASTSFSSLVLPSSS-GSYASGGVQSNVRYS 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 E G+ T + D A++G+ +F ++ G TR G F +G L +A+G Sbjct: 68 ISEQGNLSYTTSSTDLAIQGNGFFVVQDGGGTPYLTRAGSFVKNAEGYLENAAG 121 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-- 186 P + + +G+ G ++ Q G + I + + +V + + P+ + Sbjct: 308 PSQIKDVEIGKDGVVTAVYQDGGRRNIYQLAVATVPSVDNLSPQNGNVYLPSNESGVVTI 367 Query: 187 ---EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + S +++G LE SN + E+ MI + + + + + M I Sbjct: 368 GFPQTGSFGYIQKGALEGSNVDIASELTDMIESQRIYTANSKVFQTGSDLMDVLIN 423 >gi|283956177|ref|ZP_06373662.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 1336] gi|283792331|gb|EFC31115.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 1336] Length = 848 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 15/141 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 + Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GQNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMA 127 K+ G+ V+ +G Y V Sbjct: 121 KLDAYGNFVNNAG-YVVQGWN 140 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 736 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 795 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 796 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 845 >gi|13472592|ref|NP_104159.1| flagellar hook protein FlgE [Mesorhizobium loti MAFF303099] gi|14023338|dbj|BAB49945.1| flagellar hook protein; FlgE [Mesorhizobium loti MAFF303099] Length = 418 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLST ADN++N+DT G++ +FS ++ Sbjct: 6 MMR---TGVSGMNAQANRLSTTADNIANSDTTGYKRSSAEFSTLIMPSTGGAYNSGGVTT 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + ++ +S + G T + D A+ GD +F ++ P G LTR G F G LV+A+G Sbjct: 63 TIRQAVS-DPGVLQYTTSVSDLAVSGDGFFVVQDPSGTPFLTRAGAFVPDAQGRLVNAAG 121 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 28/244 (11%) Query: 21 TVADNM--SNTDTVGF--RTIKVKF-----SEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 A N+ +N T + ++ V + +++ + VA + + Sbjct: 175 VAAANLPGANASTAQYTSKSSMVAYDNLGNKKLLDVYFTNTGTGTWQVAVFDQSKATPGT 234 Query: 72 SFISTGTELDFALEGDAWFALES------PRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 SF TG L A + F + P + T G + D S ++ G + Sbjct: 235 SFPYTGGALGTA---NLTFDTTTGKLTGAPTSVSFTVPGGASLNLDLSKLTQLGTGFTVS 291 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN 180 A V P + + + G I + K + + L V + + Sbjct: 292 DAQVNGNAPSTIDKVQISKDGTIYAQYKDGSTKPLYKIPLADVQSPDQLKALPGNVYAQG 351 Query: 181 IPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + ++ G LE+SN + E+ MI + + + + + M Sbjct: 352 TDSGAIRVGFANEGKAGSIISGALENSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLMD 411 Query: 236 EAIR 239 + Sbjct: 412 VLVN 415 >gi|284926913|gb|ADC29265.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni IA3902] Length = 852 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTP---LEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 740 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTG 799 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 800 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 849 >gi|83814503|ref|YP_446705.1| flagellar biosynthesis cell-distal portion of basal-body rod [Salinibacter ruber DSM 13855] gi|294508641|ref|YP_003572700.1| flagellar hook protein FlgE [Salinibacter ruber M8] gi|83755897|gb|ABC44010.1| flagellar biosynthesis cell-distal portion of basal-body rod [Salinibacter ruber DSM 13855] gi|294344970|emb|CBH25748.1| Flagellar hook protein FlgE [Salinibacter ruber M8] Length = 432 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 36/183 (19%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---- 57 S +IG++ + + RL TV++N++N+ T F+ + FSE +G + + Sbjct: 3 LQSLSIGVSGLRSHQTRLDTVSNNIANSSTTAFKRQRAAFSEELGQAILGVGRTAGGSNI 62 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIILTRDGR 105 V+ + GS TG + D AL GD +F + LTR G Sbjct: 63 NPSKVGRGVSVASIDRNFSQGSLNDTGIKTDLALNGDGFFVASPKSGAASDQRRLTRAGN 122 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F +G LV+A+G + + VGE G + D Sbjct: 123 FTFNQNGELVTANGL---------------NVQGWEVGEDGT-----ANTGELKNVQFDP 162 Query: 166 SQG 168 + Sbjct: 163 NAQ 165 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMG 211 + + V+ G ++ + + L+ +V G LE SN + E Sbjct: 342 QLAIGDVNNPNGLEQQGENFFTTTGASGDLQLGRAGRDLQTSVVSGALESSNVDLAKEFS 401 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIR 239 +I + + + + +I ++ + + ++ Sbjct: 402 DLIKAQRSYQASSQIITTADEVLNQTVQ 429 >gi|86150552|ref|ZP_01068776.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839004|gb|EAQ56269.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni CF93-6] Length = 852 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTP---LEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 740 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTG 799 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 800 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 849 >gi|220917665|ref|YP_002492969.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955519|gb|ACL65903.1| protein of unknown function DUF1078 domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 428 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVA 60 T+ + G A LS V DN++N +TVGF++ + F + + + Q Sbjct: 4 LTALSSGTTGLQASSLELSVVGDNIANANTVGFKSGRAAFEDALSQSVIGGTGQIGLGSR 63 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLVS 116 G+ STG D AL+G+ +F + G TRDG+F V DDG LV+ Sbjct: 64 LAGVQKILTQGALASTGLATDLALQGNGFFVVRGAHAGQTGTFYTRDGQFTVDDDGYLVN 123 Query: 117 ASG 119 G Sbjct: 124 LEG 126 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG- 191 VG +G IS + +V+ + + R + + P+ +G Sbjct: 315 SVRVGPEGVISGVFTNGQTRVLGQVAVAGFAAPDQLDRAGGNLLQQTPGSGQPVVGAAGS 374 Query: 192 ---VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +V G LE SN + + ++I + F + + I ++ + E I Sbjct: 375 GGRASVVAGSLEQSNVDLAEQFVRLIAAQRAFQANSKTITTADQLLSELI 424 >gi|227820875|ref|YP_002824845.1| flagellar hook protein FlgE [Sinorhizobium fredii NGR234] gi|227339874|gb|ACP24092.1| putative flagellar hook protein FlgE [Sinorhizobium fredii NGR234] Length = 404 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 9/185 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A RLSTVA+N++N+ T G++ +FS ++ N V + Y Sbjct: 9 TGVSGMNAQANRLSTVAENIANSSTTGYKRASTEFSSMILPSSNGSYNS-GGVETSVRYS 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG------ 119 + GS T + D A++GD +F ++ G TR G F D G+LV+A+G Sbjct: 68 ISDQGSTTYTTSASDLAIDGDGFFIVQGANGQEYLTRAGAFVQDDSGNLVNAAGFTLMGY 127 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 +Y +V + N+ G ++ G MG + S + Sbjct: 128 EYEAGVDPTVVVNGFDGLTEVNLASDG-LTAAGSTAGAMGANLPSGAANGDVSTTSLVVY 186 Query: 180 NIPPT 184 + Sbjct: 187 DTQGN 191 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 10/135 (7%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT--MGLYSVDMSQGF 169 + G D S+ P K + + G + G++ + L SV Sbjct: 267 TTQLGTSFTPDGGSIDGNAPSKVSGYQIDTDGVVYIKYANGELEPRYRIALASVQSPDKL 326 Query: 170 VRRENSGISPNIP-PTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 V + S + + +G + G LE SN + E+ MI + + + + Sbjct: 327 VPESGNVYSQGVDSGVIVTGFAGSGSFGEILSGALESSNVDIADELTSMIESQRNYTANS 386 Query: 225 TLIDENEKSMLEAIR 239 + + + + Sbjct: 387 KVFQTGSELLEVLVN 401 >gi|33596140|ref|NP_883783.1| flagellar hook protein FlgE [Bordetella parapertussis 12822] gi|33573143|emb|CAE36790.1| flagellar hook protein FlgE [Bordetella parapertussis] Length = 473 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 22/205 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K+S + Sbjct: 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALE-GDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG-- 119 VG+ +TG E D A++ G +F L G+ +R+G F V + +V+A G Sbjct: 60 ---RFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFR 116 Query: 120 --KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG--------- 168 YP + + P+ + + + A + + + Sbjct: 117 LTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPNDTPADDGAVELDG 176 Query: 169 --FVRRENSGISPNIPPTPLEDLSG 191 + SG + P PL+ Sbjct: 177 TTYRFTNASGTFAWVAPAPLDGTYN 201 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 +VG+ G + + + I T+ L + + QG N+ P + Sbjct: 362 LSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTN 421 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ LE SN + E+ MI + + + I ++ M + Sbjct: 422 GL-ATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMN 471 >gi|205355740|ref|ZP_03222510.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346517|gb|EDZ33150.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 852 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTP---LEDLSG 191 V +KG I GK +A M + SV + G + E +G Sbjct: 740 IRVDDKGNILGEFTNGKTFAVAKMAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTG 799 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 800 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 849 >gi|239906284|ref|YP_002953024.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] gi|239796149|dbj|BAH75138.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] Length = 518 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 6/124 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---VGAIKNDIDQKISF 58 +S G++ L Q ++T +N++N +TVG+++ ++ F+++ + +D Q + Sbjct: 1 MSSIWTGVSGLLTYSQGIATTGNNLANVNTVGYKSSRMLFADMISTMAGGTSDGSQIGTG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGD-AWFALES--PRGIILTRDGRFKVTDDGSLV 115 V G L EVGS D A+ G+ +F ++ TR G F +G+L+ Sbjct: 61 VQVGSIALQTEVGSLQDASNSTDLAITGERGYFVVKDAANDKTYYTRAGDFNFDKNGNLM 120 Query: 116 SASG 119 SA+G Sbjct: 121 SATG 124 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 10/109 (9%) Query: 141 NVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP---PTPLEDLSGV 192 NV E G I G+ A + L R N+ +SP T SGV Sbjct: 407 NVDENGVIWGSFTNGQTKALYVLALADFTNPTDLYRNGNNLLSPTTESGKATVGRANSGV 466 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE SN + EM +I + F + + ++ E M A++ Sbjct: 467 FDSIAGNTLESSNVDMASEMVNLIINQRAFQANSKVVTTAESLMETALQ 515 >gi|331005445|ref|ZP_08328824.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC1989] gi|330420721|gb|EGG95008.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC1989] Length = 400 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 12/154 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDIDQ 54 ++ L + LSTV++N++N +T GF+ + F ++ + Q Sbjct: 4 STIYTASTGMLTFSKGLSTVSNNVANLNTPGFKRSDLLFRDLFYQFQQSGEMDGQTSAQQ 63 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 + V S G TG D A+ G+ +F L P + TR G+F+ DG L Sbjct: 64 NGAGVTDAGTITSFAAGDIQQTGNSTDVAISGNGFFILREPDQQMYTRAGQFEFDSDGFL 123 Query: 115 VSASGKYPVLD----MASVPIQIPQKDEIFNVGE 144 S S V V I I Q + V Sbjct: 124 SSTSLGSRVAGIDASNNLVDININQFNASPAVAT 157 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 9/109 (8%) Query: 139 IFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 N+G G + G+ + + L Q + N + P+ Sbjct: 286 DVNIGADGVLEASYSNGETADVGQLALAWFSDLQSMRQIGNGIFLVSNEQQPIIGKGSSD 345 Query: 194 V----KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G +E SN E +I + + F + + ++ + + + E + Sbjct: 346 IFGDLVGGSIEISNVELTQEFTDLIIIQRGFQASSQIMSASNEMIQELL 394 >gi|88799021|ref|ZP_01114602.1| Flagellar hook protein FlgE [Reinekea sp. MED297] gi|88778248|gb|EAR09442.1| Flagellar hook protein FlgE [Reinekea sp. MED297] Length = 1472 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--SFVAS 61 SF GL+ A + L +N++N T GF+ + +F + + Q S V Sbjct: 2 SFGSGLSGVAAANKDLKITGNNIANASTTGFKASRAEFGDAYTTSILGMGQDPIGSGVNV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 E G+ T + LD A++G+ +F E P + TR G F + DG +VS G Sbjct: 62 NNVGQKFEQGNISQTNSVLDLAIDGNGFFVTEYPNNSVTYTRSGIFGIDKDGYIVSNQG 120 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFV---RRENSGISPNIPPTPLEDL 189 + + + G I + +V+ + L S +G + E + T E Sbjct: 1359 KDLEIDDDGTIYARYTNGEAQVLGQVALASFANMEGLNPVGQTEWQESFESGDATIGEPG 1418 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G+ T++ LEDS + ++ +I + + + I+ I Sbjct: 1419 TGLLGTLQSAALEDSTVDLSEQLVHLIIAQRNYQASAKTIETANAVTQTIIN 1470 >gi|330972414|gb|EGH72480.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 582 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVAS 61 SFN ++ A +RL +N++N T+GF++ + +FS + + + Q V Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 62 GKEYLSKEVG-SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G + IS+G LD ++G+ +F + + TR G F +V + G Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-DLSG 191 + +VG G + K I + L S G R ++ + E D+ G Sbjct: 469 KSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQPRSDTRWAATADSGVAEYDVPG 528 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 529 VGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 581 >gi|330975977|gb|EGH76043.1| flagellar hook protein FlgE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 581 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 21/214 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVAS 61 SFN ++ A +RL +N++N T+GF++ + +FS + + + Q V Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 62 GKEYLSKEVG-SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G + IS+G LD ++G+ +F + + TR G F +V + G Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Query: 121 YPVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSVDMS 166 + I+ + + NVG + + + +A + + D Sbjct: 122 RLQGYAANDKGEIASGIRTDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDPDDP 181 Query: 167 QGFVRRENSGISP-NIPPTPLEDLSGVTVKRGFL 199 + R I I P P D +K+ F+ Sbjct: 182 ATYTRVATRTIQDVGITPVPAADHE---LKQYFV 212 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLSG 191 + VG G + K I + L S G R + G + D+ G Sbjct: 468 KSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQPRSDTRGTATADSGVAEYDVPG 527 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 528 VGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 580 >gi|2316082|gb|AAC45551.1| hook protein [Campylobacter coli] Length = 851 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 739 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 798 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 799 GRGEMKTAALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 848 >gi|237799207|ref|ZP_04587668.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806226|ref|ZP_04592930.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022062|gb|EGI02119.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027339|gb|EGI07394.1| flagellar hook protein FlgE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 582 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVAS 61 SFN ++ A +RL +N++N T+GF++ + +FS + + N + V Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYSSAQLGNGNNAVGDGVRL 61 Query: 62 GKEYLSKEVG-SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G + IS+G LD ++G+ +F + + TR G F +V + G Sbjct: 62 AAVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 + +VG G + K I + L S G R ++ + D+ G Sbjct: 469 KSLDVGRDGILRAGFTNGMNKDIGQVMLASFANPHGLQPRSDTRWAATADSGVADYDVPG 528 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 + ++ G LE SN E+ +I + + + I M I++ Sbjct: 529 IGTLGSIISGGLEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 581 >gi|163758031|ref|ZP_02165119.1| flagellar hook protein E [Hoeflea phototrophica DFL-43] gi|162284320|gb|EDQ34603.1| flagellar hook protein E [Hoeflea phototrophica DFL-43] Length = 419 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G + A RL TVADNM+N +T G++ +FS ++ + V Sbjct: 6 MMR---TGASGMNAQANRLGTVADNMANANTTGYKRASAEFSSLILP-GSAGSYNSGAVT 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + Y + G+ T ++ D AL+G +F + G+ LTR G F +G LV+A+G Sbjct: 62 TDVRYSISQAGALEFTSSKTDMALDGSGFFIVTDDNGLPFLTRAGSFVPDGEGFLVNAAG 121 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 10/125 (8%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENS---- 175 D A+V P + E G I + G + + + L V + Sbjct: 292 DDANVNGSKPSTVTDIEISEDGTIFASYENGTLEPLYRVALADVTSPDKLRPLAGNVYSQ 351 Query: 176 GISPNIPPTPLED-LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ + T S V G LE SN + E+ MI + + + + + M Sbjct: 352 GLDSGVITTGFAGSGSFGKVVSGALESSNVDIAEELTDMIAAQRSYTANSKVFQTGSDLM 411 Query: 235 LEAIR 239 + Sbjct: 412 EVLVN 416 >gi|326204617|ref|ZP_08194473.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] gi|325985184|gb|EGD46024.1| fagellar hook-basal body protein [Clostridium papyrosolvens DSM 2782] Length = 443 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 16/135 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M S G++ A + ++ + +N++N +T+GF+ +V F E+ Sbjct: 1 MMRSMFSGVSGLKAHQAKMDVIGNNVANVNTLGFKAGRVTFQEIFNQTLRGAGAPDAATA 60 Query: 54 -------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGIILTRDG 104 Q +A G GS T D ++ G+ +F ++ + TR G Sbjct: 61 RGGTNPMQIGLGIAVGSIDNQMTGGSPQRTDNPTDLSISGNGFFIVKGSAADTFKFTRAG 120 Query: 105 RFKVTDDGSLVSASG 119 F + G+LVS G Sbjct: 121 NFGLDKLGNLVSGDG 135 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 11/112 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLE 187 FN+G G I+ + + + + L D G + + P P Sbjct: 329 TFNIGSDGMITGVYSNGQQQPLGLIALAGFDNPAGLQKVGGNLFMPTTNSGDFNKGVPAG 388 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E MI + F + + +I +++ + E + Sbjct: 389 SQGVGTLSPGTLEMSNVDLSREFTDMIVTQRGFQANSRIITTSDEMLQELVN 440 >gi|303248690|ref|ZP_07334944.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] gi|302489946|gb|EFL49872.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] Length = 549 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 17/135 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISF 58 T+ G++ +A +++++ +N++N +T GF++ + F ++ A + +DQ Sbjct: 6 NTAMWSGVSGLMANSTKMTSIGNNLANVNTYGFKSARTDFVTLMSATIGTASGVDQVGRG 65 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--------------SPRGIILTRDG 104 V G G TGT D A+ G+ +F ++ + + TR G Sbjct: 66 VRVGSVVTDYSQGGLEITGTNTDMAINGNGFFMVKQKSSVGSNGKMLNTGNQTMYYTRAG 125 Query: 105 RFKVTDDGSLVSASG 119 F ++G L S +G Sbjct: 126 DFHFDENGYLSSTTG 140 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 63/237 (26%), Gaps = 49/237 (20%) Query: 26 MSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV-----------ASGKEYLSKEVGSFI 74 ++N + G+ F V D S A+G + Sbjct: 336 VANISSSGYPEFTANFKSVSNGSFTDQGNATSISLNLGMRCTTGWATGTTLGDIDPTDMT 395 Query: 75 STG--TELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 + G + + + + T + +G +G Sbjct: 396 TLGSFNPAQLKINSNVTTNYATSSSTVFT-------SQNGY---TAGLL----------- 434 Query: 133 IPQKDEIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 +V G ++ G + + L + QG NS + + Sbjct: 435 -----TSVSVDSDGVLTGTFSNGVSLQLWVLALANFTNLQGLNNAGNSLYTATLESGEGT 489 Query: 188 -----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S ++ LE SN + EM MI + F + I + + E I+ Sbjct: 490 TNRPNSGSVGSISGNTLESSNVDMAAEMVSMIVTQRGFEGNSKTITTVDTMLSEIIQ 546 >gi|317492428|ref|ZP_07950857.1| fagellar hook-basal body protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919767|gb|EFV41097.1| fagellar hook-basal body protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 414 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 FN ++ A L + +N++N+ TVGF++ V F+++ K + K++ V Sbjct: 2 GFNQAVSGLNAAASNLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVKVASVQQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 G +T LD A+ G+ +F ++ G+ +R+G+F D L +A G Sbjct: 60 ---DFTDGITTTTNRGLDVAISGNGFFRMQDANGGVYYSRNGQFTKNQDNFLTNAQGVFL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP PIQIP G +S Sbjct: 117 TGYPAAGSPPTIQQGAQPSPIQIPTGMMPAKASSSGNMSMN 157 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT 193 + + + G I+ Q+ +++A + + + +G N+ + ++G + Sbjct: 303 YQINDDGTITGTYSNQQTQLLAQIVMANFANPEGLQSEGNNMWKESATSGQAIVGVAGAS 362 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +E SN + E+ MI + + S I ++ + + Sbjct: 363 GLGALTSGAVEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 412 >gi|66046706|ref|YP_236547.1| flagellar basal body rod protein:protein of unknown function DUF1078:flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] gi|63257413|gb|AAY38509.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Pseudomonas syringae pv. syringae B728a] Length = 582 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVAS 61 SFN ++ A +RL +N++N T+GF++ + +FS + + + Q V Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRL 61 Query: 62 GKEYLSKEVG-SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G + IS+G LD ++G+ +F + + TR G F +V + G Sbjct: 62 ASVQQNFNQGETVISSGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGG 121 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLSG 191 + +VG G + K I + L S G R + + D+ G Sbjct: 469 KSLDVGRDGILRAGFTNGMTKDIGQVMLASFANPHGLQPRSDTRWTATADSGVAEYDVPG 528 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 529 VGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 581 >gi|84388091|ref|ZP_00990987.1| flagellar hook protein [Vibrio splendidus 12B01] gi|84377158|gb|EAP94028.1| flagellar hook protein [Vibrio splendidus 12B01] Length = 434 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V + N + + Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTAGGGAQASQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P LTR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDRMVPEINELTRNGAFHLNKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQK 151 ++ VL A P+ IP + E E+ Sbjct: 123 EFLLGYDVDPNSGEVLSYAPKPLDIPAEFGKPKQTENIEVGVN 165 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-----P 185 I + + GE ++ +GL V QG ++ + Sbjct: 323 IDFDEYGSVLGTYSNGE----NVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGE 378 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S ++ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 379 SNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432 >gi|86154000|ref|ZP_01072202.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842538|gb|EAQ59751.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni HB93-13] Length = 845 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 733 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 792 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 793 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 842 >gi|306841276|ref|ZP_07473987.1| flagellar hook protein FlgE [Brucella sp. BO2] gi|306288678|gb|EFM60009.1| flagellar hook protein FlgE [Brucella sp. BO2] Length = 383 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 A RLSTVADN++N TVG++ + +FS +V S V + Y + G Sbjct: 1 MNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGS-VLTDVRYGISDQG 59 Query: 72 SFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPV 123 ST + D A++G+ +F ++ P G TR G F +G LV+++G Y + Sbjct: 60 GIRSTSSTTDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAGYYLL 112 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 263 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNVFLPSAESGDV 322 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 323 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 380 >gi|294084418|ref|YP_003551176.1| hypothetical protein SAR116_0849 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663991|gb|ADE39092.1| hypothetical protein SAR116_0849 [Candidatus Puniceispirillum marinum IMCC1322] Length = 1575 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 18/160 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVAS 61 SF L +S ++N++N T GF+ +V+F ++ ++N S Sbjct: 2 SFYTALTGLNGSSADISATSNNIANVGTTGFKRSRVEFGDIFATSPLQNSSSSLGSGAIL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 G+ S+ LD A+ G +FAL+ + + TR+G V +D +V ++ Sbjct: 62 KGVKQQFTQGNIASSLNALDLAISGQGFFALKPSLTSAQTVYTRNGSLNVDNDRYVVDSA 121 Query: 119 GK----YPVLDMAS---------VPIQIPQKDEIFNVGEK 145 G+ YPV + S VP+Q+P Sbjct: 122 GQYLLTYPVNNDGSVTAKDLQSAVPLQLPVTSGDPQATSN 161 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 + G I + + + + + G + N+ + + TP +G Sbjct: 1463 LEIDSSGTIRANYTNGQNNPLGKIVVANFNNQNGLKQIGNATYVETAVSGTPQVGEAGAE 1522 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E+ +I + + + I+ I Sbjct: 1523 GFGNILSGSLERSNVDITEELVNLITAQRNYQASAKAIETTTGLTQTIIN 1572 >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] gi|254040202|gb|ACT56998.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 7/145 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A R+S V+DN++N DTVG++ + FS +V ++ S K Sbjct: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTK 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--- 119 + +S E GS + T + D A++G +F ++ + LTR G F + ++G L + +G Sbjct: 66 DMIS-EQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVL 124 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YP L AS P+ + + + Sbjct: 125 LGYP-LKNASAPLIVNSFQGLERIN 148 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 12/113 (10%) Query: 134 PQKDEIFNVGEKG---EISQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIP------ 182 P K + F+V + G I G I + + +V + + P Sbjct: 303 PGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISI 362 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P + G + G LE +N + E+ ++I + + + + M Sbjct: 363 GFPGHNQHG-EIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMD 414 >gi|269961599|ref|ZP_06175961.1| flagellar hook protein [Vibrio harveyi 1DA3] gi|269833640|gb|EEZ87737.1| flagellar hook protein [Vibrio harveyi 1DA3] Length = 437 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ + + L+T ++N++N +T GF+ + +FS+V N + + Sbjct: 3 YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFSDVYSNSLFTNAKTTPGGGAQANQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P+ +TR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEMTRNGAFHLNKDNYMVTAND 122 Query: 120 ----KYPVLDMAS-------VPIQIPQKDEIFNVGEKGEISQK 151 Y V + PI IP + E+ Sbjct: 123 EFLLGYQVNPESGEVSSYEPQPINIPAEFGKPKQTANIEVGVN 165 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ + + L V QG ++ + E Sbjct: 324 TKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESN 383 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 384 KGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 435 >gi|33601541|ref|NP_889101.1| flagellar hook protein FlgE [Bordetella bronchiseptica RB50] gi|33575977|emb|CAE33056.1| flagellar hook protein FlgE [Bordetella bronchiseptica RB50] Length = 473 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 22/205 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F L+ A Q L + +N++N+ TVGF++ F++V + + + K+S + Sbjct: 2 GFGQALSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALE-GDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG-- 119 VG+ T E D A++ G +F L G+ +R+G F V + +V+A G Sbjct: 60 ---RFTVGNISMTNGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYVVNAQGFR 116 Query: 120 --KYPVLDMASVPI--QIPQKDEIF----NVGEKGEISQKGKVIATMGLYSVD-----MS 166 YP + + P+ Q+P + G +G ++ K+I +VD Sbjct: 117 LTGYPAGAVGAQPVDLQLPPGNIAPRPASTAGLQGNLNANAKLINPNDTPAVDGTVELDG 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSG 191 + G+ + P P++ Sbjct: 177 TSYSFTNAGGVFAWVAPGPVDGTYN 201 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLED 188 +VGE G + + + I T+ L + + QG N+ + P + Sbjct: 362 LSVGEDGSLVAKYTNGETQTIGTVVLANFNNVQGLKPVGNNAWAETSESGQATLGQPGTN 421 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + LE SN + E+ MI + + + I + M + Sbjct: 422 GLATIVGQ-ALEGSNVDLSSELVNMIVAQRTYQANAQTIQTQNEVMQVLMN 471 >gi|153834474|ref|ZP_01987141.1| FlgE [Vibrio harveyi HY01] gi|156973586|ref|YP_001444493.1| flagellar hook protein FlgE [Vibrio harveyi ATCC BAA-1116] gi|148869170|gb|EDL68202.1| FlgE [Vibrio harveyi HY01] gi|156525180|gb|ABU70266.1| hypothetical protein VIBHAR_01289 [Vibrio harveyi ATCC BAA-1116] Length = 437 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ + + L+T ++N++N +T GF+ + +FS+V N + + Sbjct: 3 YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFSDVYSNSLFTNAKTTPGGGAQANQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P+ +TR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRLIPQQNEMTRNGAFHLNKDNYMVTAND 122 Query: 120 ----KYPVLDMAS-------VPIQIPQKDEIFNVGEKGEISQK 151 Y V + PI IP + E+ Sbjct: 123 EFLLGYQVNPESGEVSSYEPQPINIPAEFGKPKQTANIEVGVN 165 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRREN---SGISPNIPPTPLEDL 189 + E G + G+ + + L V QG ++ + E Sbjct: 324 TKVDFDENGSVLGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESN 383 Query: 190 SGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 384 KGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQ 435 >gi|194428463|ref|ZP_03061003.1| flagellar hook protein FlgE [Escherichia coli B171] gi|194413515|gb|EDX29797.1| flagellar hook protein FlgE [Escherichia coli B171] Length = 396 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 >gi|163845457|ref|YP_001623112.1| flagellar hook protein FlgE [Brucella suis ATCC 23445] gi|163676180|gb|ABY40290.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 396 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N VG++ + +FS +V S V Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASMVGYKRAETQFSSLVLPSTAGQYNSGS-VL 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 + Y + G ST + D A++ + +F ++ P G TR G F +G LV+++G Sbjct: 62 TDVRYGISDQGGIRSTSSTTDLAIDDNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 121 Query: 120 KYPV 123 Y + Sbjct: 122 YYLL 125 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 276 QAPSSIKGVDVGNDGAVVAVYENGTQKVLYRIPLANVASPNRMTVVSGNIFLPSAESGDV 335 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 336 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 393 >gi|307748585|gb|ADN91855.1| Flagellar hook protein [Campylobacter jejuni subsp. jejuni M1] Length = 690 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 >gi|305432574|ref|ZP_07401735.1| flagellar hook protein FlgE [Campylobacter coli JV20] gi|304444285|gb|EFM36937.1| flagellar hook protein FlgE [Campylobacter coli JV20] Length = 847 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 735 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 794 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 795 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 844 >gi|315639349|ref|ZP_07894511.1| flagellar hook protein [Campylobacter upsaliensis JV21] gi|315480675|gb|EFU71317.1| flagellar hook protein [Campylobacter upsaliensis JV21] Length = 839 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDI 52 M S G++ A + + +N+SN +T GF+ + F + +N Sbjct: 1 MMRSLWSGVSGMQAHQIAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATVPTENLG 60 Query: 53 DQKISFVASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 Q + G S GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GQNPLQIGLGTSINSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAAGNFVNNAG 133 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENS-----GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 +A + + SV + G + G S NI +K LE SN + Sbjct: 747 VAKIAMASVANNSGLEEIGGNLFKVTGNSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRS 806 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + Q+I + + + + + I +++ + ++ Sbjct: 807 LTQLIVVQRGYQANSKTISTSDQMLNTLLQ 836 >gi|239817165|ref|YP_002946075.1| flagellar basal body FlaE domain protein [Variovorax paradoxus S110] gi|239803742|gb|ACS20809.1| flagellar basal body FlaE domain protein [Variovorax paradoxus S110] Length = 404 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ G++ A L + +N++N+ TVGF++ F +V + + +S + Sbjct: 2 GFSQGISGLSAAAANLDVIGNNIANSGTVGFKSGAATFQDVYAGSRVGLGVAVSGI---- 57 Query: 64 EYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + GS ++ LD A+ GD +F L SP G + +R+G+F DG +V+A+G Sbjct: 58 -VQNFTQGSVQTSSRPLDVAILNGDGFFRLSSPSGEVMYSRNGQFTRDKDGFIVNAAG 114 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 11/113 (9%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 F++ G I+ ++ ++ + L S G + + TP Sbjct: 290 TSFSINPDGTITGKFSNEQTTLMGQVVLTSFANPNGLEPMGENVWGETLASGQPLTGTPG 349 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ +I + + + + ++ + I Sbjct: 350 AGTKQGSLASGALEASNVDLTSELVNLIVAQRSYQANAQTVKTQDQVVQTLIN 402 >gi|303326942|ref|ZP_07357384.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] gi|302862930|gb|EFL85862.1| flagellar hook protein FlgE [Desulfovibrio sp. 3_1_syn3] Length = 817 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 5/121 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKISFVA 60 S ++ LA +++ V +N++N T+GF++ ++ F++ + G+ + Q + V+ Sbjct: 6 SMWTSVSGLLAHGNKMNLVGNNIANVSTIGFKSQRMDFNDYLYMSGSSASGPTQIGAGVS 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGIILTRDGRFKVTDDGSLVSAS 118 + G+ +T + D A++G+ +F + TR G F + LV+ Sbjct: 66 TYAVLGDYSQGALETTNSGTDLAIDGNGYFGVRKTGSDQKYYTRAGDFFFDKERKLVNPE 125 Query: 119 G 119 G Sbjct: 126 G 126 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 16/114 (14%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGIS-PNIPPTPLEDLSG 191 + G I G + + +Y +QG R + S N P ++G Sbjct: 703 SDVRIDTSGIIYGVYSNGTTLPLYQITMYDFQNNQGLWREGGNLFSSTNDSGEPRIGVAG 762 Query: 192 VTVKRGF-------LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 GF +E SN + E QMI + F + + I + + I Sbjct: 763 DN---GFGTTKAYNIEQSNVDMSREFVQMITTQRGFQANSKGITTVDTMLETVI 813 >gi|170734374|ref|YP_001766321.1| flagellar hook protein FlgE [Burkholderia cenocepacia MC0-3] gi|254246965|ref|ZP_04940286.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|124871741|gb|EAY63457.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|169817616|gb|ACA92199.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 413 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVAS- 61 + GL+ L + +N++N +TVGF++ +F+++ ++ ++ +I + Sbjct: 2 GYQQGLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTTL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 62 NSVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYMADKNGVLNTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS----GISPNIPPTPLED 188 +++G G+++ V+ + L + + G V + + +P Sbjct: 301 TTYSIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYAESAASGVPQVSAPG 360 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|149908759|ref|ZP_01897420.1| flagellar hook protein [Moritella sp. PE36] gi|149808301|gb|EDM68240.1| flagellar hook protein [Moritella sp. PE36] Length = 437 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 9/128 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S++IGL+ + ++L+ ++ N++N +T GF++ + +FS V + VA+ Sbjct: 2 SYSIGLSGLRSTNEQLNVISQNIANVNTSGFKSGRAEFSSVY----SGGSAGGVEVAAIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---- 119 ++ G ++TG +D A+ G +F L + TR G F + ++SG Sbjct: 58 SNFDRD-GDVVNTGRSMDLAISGRGFFVLNNGGETSYTRAGSFVRNASNYIETSSGARLQ 116 Query: 120 KYPVLDMA 127 YPV Sbjct: 117 GYPVDANG 124 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 10/111 (9%) Query: 135 QKDEIFNVGEKGE---ISQKGK--VIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLED 188 + + + G + G+ + + L + G + +N+ + P Sbjct: 321 GDLKTIRIDDDGSLYGVYTNGQDKLQGKVILANFANPNGLRQGDNTTWGQSFASGAPTVG 380 Query: 189 LSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 L ++ G E SN + E+ ++ + + + + I EK Sbjct: 381 LPSSGTLGSLTSGAYEGSNVDLTGELVSLMTAQRNYQANSKTISAAEKMTQ 431 >gi|107023953|ref|YP_622280.1| flagellar hook protein FlgE [Burkholderia cenocepacia AU 1054] gi|116691040|ref|YP_836663.1| flagellar hook protein FlgE [Burkholderia cenocepacia HI2424] gi|105894142|gb|ABF77307.1| flagellar basal body FlaE [Burkholderia cenocepacia AU 1054] gi|116649129|gb|ABK09770.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia HI2424] Length = 413 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVAS- 61 + GL+ L + +N++N +TVGF++ +F+++ ++ ++ +I + Sbjct: 2 GYQQGLSGLSGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTTL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + +RDG F+ +G +V+A G Sbjct: 62 NSVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNAQGMN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYMADKNGVLNTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS----GISPNIPPTPLED 188 +++G G+++ V+ + L + + G V + + +P Sbjct: 301 TTYSIGTDGKLTGNYSNGQTAVLGQIALANFNNPNGLVNLGGNQYAESAASGVPQVSAPG 360 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|57506151|ref|ZP_00372072.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] gi|57015546|gb|EAL52339.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM3195] Length = 853 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--------IKNDI 52 M S G++ A + + +N+SN +T GF+ + F + +N Sbjct: 1 MMRSLWSGVSGMQAHQIAMDVEGNNISNVNTAGFKYSRADFGTMFSQTVKIATVPTENLG 60 Query: 53 DQKISFVASGKEYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 Q + G S GS +T D A+ GD +F + G+ LTRDG F Sbjct: 61 GQNPLQIGLGTSINSTTRIHSQGSVQTTNKNTDVAINGDGFFMVSDDGGLTRYLTRDGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAAGNFVNNAG 133 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENS-----GISPNIPPTPLEDL 189 V +KG I GK +A + + SV + G + G S NI Sbjct: 741 IRVDDKGHILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTGNSGNIVVGEAGTG 800 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + Q+I + + + + + I +++ + ++ Sbjct: 801 GRGEMKTSALEMSNVDLSRSLTQLIVVQRGYQANSKTISTSDQMLNTLLQ 850 >gi|283834455|ref|ZP_06354196.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] gi|291070002|gb|EFE08111.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] Length = 400 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N+ TVG++++ +FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANSGTVGYKSMTTQFSAMYAGT-----QAMGVSVAGS 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ D +F + +S I TR G F +G +V+ASG Sbjct: 57 AQSISTGGSMVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFVTDKNGYIVNASGDYL 116 Query: 120 -KYPVLDMAS 128 YPV D + Sbjct: 117 QGYPVDDSGT 126 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 10/129 (7%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 V+ + +Q+ +++ GE +G+V+ L + G Sbjct: 273 VTTNSATGYASATQNGVQVDDDGKVYATYSNGERMLQGQVV----LATFPDENGLQAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + TPL G T+ G LE SN + E+ ++ + + + T +I Sbjct: 329 TAWVQTGESGTPLIGTPGSGSCGTLSSGMLESSNVDITNELVNLMTAQRNYQANTKVIST 388 Query: 230 NEKSMLEAI 238 + + + +A+ Sbjct: 389 STQ-LDQAL 396 >gi|148976394|ref|ZP_01813100.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] gi|145964217|gb|EDK29473.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] Length = 434 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A + L+T ++N++N +T GF+ + +F +V N + + Sbjct: 3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSNSLFTNAKTTSGGGAQASQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P LTR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRVSGTGFFAVAKDRMVPEINELTRNGAFHLNKDNYMVTAND 122 Query: 120 KYP-----------VLDMASVPIQIPQKDEIFNVGEKGEISQK 151 ++ VL A P+ IP + E E+ Sbjct: 123 EFLLGYDVDPNSGEVLSYAPKPLDIPAEFGKPKQTENIEVGVN 165 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLE 187 I + + GE ++ +GL V QG ++ + + E Sbjct: 323 IDFDEYGSVLGTYSNGE----NVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGDKIWGE 378 Query: 188 DLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + + ++ Sbjct: 379 SNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432 >gi|262364764|gb|ACY61321.1| flagellar hook protein [Yersinia pestis D182038] Length = 288 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A A ++L+T+++N++N+ T GF+ + +FS + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQ-----SQPLGVAVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + G TG LD A+ G +F + G TR G F+ DG LV+ G Sbjct: 57 SQNISKDGQKEKTGMGLDLAISGGGFFVVRESSGDKAYTRAGMFRSDVDGYLVNGQGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 YP ++ I +I N G + S++ +A + Sbjct: 117 QGYPADAAGNIQAGIISDLKINNAGVPAKASEQLDFMANLN 157 >gi|206558968|ref|YP_002229728.1| flagellar hook protein FlgE [Burkholderia cenocepacia J2315] gi|198035005|emb|CAR50877.1| flagellar hook protein 1 FlgE1 [Burkholderia cenocepacia J2315] Length = 413 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 68/159 (42%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF++ +F+++ ++ ++ +I + Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSVNTQIGIGTSL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T + LD A+ G+ +F + + +RDG F+ +G +V + G+ Sbjct: 62 NSVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRN 121 Query: 122 PV------LDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAANAGGVINTAQTVPLQAPTTNIAPTATTKITGQF 160 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS----GISPNIPPTPLED 188 +++G G+++ V+ + L + + G V + + +P Sbjct: 301 TTYSIGADGKLTGNYSNGQTAVLGLIALANFNNPNGLVNLGGNQYAESAASGVPQVSAPG 360 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|126444045|ref|YP_001061246.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|134280998|ref|ZP_01767708.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei 305] gi|167725930|ref|ZP_02409166.1| flagellar hook protein FlgE [Burkholderia pseudomallei DM98] gi|167905090|ref|ZP_02492295.1| flagellar hook protein FlgE [Burkholderia pseudomallei NCTC 13177] gi|254182894|ref|ZP_04889487.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1655] gi|254299686|ref|ZP_04967135.1| flagellar hook protein FlgE [Burkholderia pseudomallei 406e] gi|125657218|gb|ABN48706.1| flagellar hook protein FlgE [Burkholderia pseudomallei] gi|126223536|gb|ABN87041.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|134248020|gb|EBA48104.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei 305] gi|157809637|gb|EDO86807.1| flagellar hook protein FlgE [Burkholderia pseudomallei 406e] gi|184213428|gb|EDU10471.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1655] Length = 395 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L+T++ N++N +T GF+ + F+ +V + + S S Sbjct: 2 SFNIALSGINAINSQLNTISHNIANANTYGFKAGRANFATMVAGTQANGTYIGSITQSVG 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 G F+ TG LD A++G+ +F + G + TR G F+ DG +V G+ Sbjct: 62 TR-----GGFLPTGRALDGAIDGNGFFVTKDSDGSMLFTRFGYFQRDADGYIVDGFGRRA 116 Query: 123 VL---DMASVPIQIPQKDEI 139 A I++P E Sbjct: 117 QGYGASGAYGDIRVPTDTEP 136 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 15/142 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKD-----EIFNVGEKGEI---SQKGKV--IATMGLYSVD 164 V+ +G V + + + E G + GK + ++ L + Sbjct: 254 VNYAGTTQVAGETTTTVNRDNGYAAGVPGEVMLDEDGGVVVQYSNGKQRKVGSLALATFA 313 Query: 165 MSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 G ++ + PL +G V G LE SNA+ E+ M+ + Sbjct: 314 NQDGLSAVGDTAWRASAASGNPLIGSAGSGALGKVVAGSLELSNADVTQELVDMMSAQRN 373 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + + ++ + M ++ + Sbjct: 374 YQANSKVLSTENQMMQALMQAL 395 >gi|307719964|ref|YP_003891104.1| flagellar hook protein FlgE [Sulfurimonas autotrophica DSM 16294] gi|306978057|gb|ADN08092.1| flagellar hook protein FlgE [Sulfurimonas autotrophica DSM 16294] Length = 709 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 27/228 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDI 52 M S G++ + + + ++N++N +TVGF+ + FS+++ K Sbjct: 1 MLKSLFSGVSGLQSHQVAMDVESNNIANVNTVGFKYSRANFSDLLAQTKAIATAPQGQLG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRF 106 + V G S GS ++ D A++GD +F + G TR G F Sbjct: 61 GKNPVQVGLGSTVSSMTRIFSQGSIQNSDKNTDVAIQGDGFFIISPDGGNTYKYTRAGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQ--IPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 K G+ V +G + P+ + I N+ ++ + + L + Sbjct: 121 KFDAGGNFVDNNG-FIAQGWLRDPVTGKVDSTAPIENINIAPGLTTPAQPTQEVVLKANL 179 Query: 165 MSQGFVRRENSGI-----SPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 S V + +P P P D +G ++ G N M Sbjct: 180 NSGAIVESFSPAYQVPTGAPTDPALPAIDGNGNPIESG-----NVGVM 222 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSGVT 193 + + G + G+ +A +G+ ++G N + P+ + Sbjct: 597 IRIDQSGTLVGSFSNGRSFGLAQIGMAKFTNNEGLSTEGGNVYVQTANSGDPIIGTAATA 656 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ LE SN + + Q+I + + F + I +++ + I Sbjct: 657 GRGFIQSAALEASNVDLSRALTQLIIIQRGFQANGKTITTSDQLLQTLI 705 >gi|315928464|gb|EFV07776.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 437 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 >gi|57236913|ref|YP_179866.1| flagellar hook protein FlgE [Campylobacter jejuni RM1221] gi|57165717|gb|AAW34496.1| flagellar hook protein [Campylobacter jejuni RM1221] gi|315059173|gb|ADT73502.1| Flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni S3] Length = 845 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTRYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTP---LEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 733 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTG 792 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 793 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 842 >gi|88597739|ref|ZP_01100972.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 84-25] gi|88190043|gb|EAQ94019.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 84-25] Length = 865 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 753 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 812 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 813 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 862 >gi|148926818|ref|ZP_01810497.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844543|gb|EDK21650.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 865 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 753 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 812 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 813 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 862 >gi|218563315|ref|YP_002345095.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112361022|emb|CAL35823.1| flagellar hook subunit protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 865 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 753 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 812 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 813 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 862 >gi|304392493|ref|ZP_07374433.1| flagellar hook protein FlgE [Ahrensia sp. R2A130] gi|303295123|gb|EFL89483.1| flagellar hook protein FlgE [Ahrensia sp. R2A130] Length = 423 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 18/209 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKIS 57 M ++ A RLSTVADN++N DT G++ +F+++V + D Sbjct: 6 MMR---TSVSGMQAQSNRLSTVADNVANVDTTGYKKYSTEFAQLVRPGASSGVDSSLGSG 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 V + + G+ T + D A+ G+ +F +E G LTR G F G LV+ Sbjct: 63 GVLTDARQHISQQGNVSYTQSSTDIAINGNGFFVVEDSGGSNSLTRAGSFVADASGFLVN 122 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---------SQKGKVIATM--GLYSVDM 165 A G+ A P + E + +Q G+ + + +V Sbjct: 123 AGGQRLKGVAADDQGNFPASIGSISALEPVSVDKQALAAVPTQNGRFVPNLPANSVAVTG 182 Query: 166 SQGFVRRENSGISPNIPPTPLEDLSGVTV 194 S + T ++L V Sbjct: 183 DTPVDNSAASTFAHKTSLTAYDNLGDAKV 211 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 60/224 (26%), Gaps = 49/224 (21%) Query: 37 IKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG--------SFIST---GTELDFALE 85 F + + + + G + T G +D AL Sbjct: 225 EMTAFDASTASPTGGFPYASAALGTSTLTFDPANGQLAAGSPDTLTFTVPNGRPVDLAL- 283 Query: 86 GDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 G ++ D S+V+A D+ P P E V + Sbjct: 284 -----------------AGTTQLAADYSIVTA-------DLDGAP---PASMEGIVVDGE 316 Query: 146 GEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVK 195 G +S + + + + L +V + N + S + Sbjct: 317 GVLSARYSDGSLRDLYRIPLAAVVSPDRMDSDTGTVFLANTESGDIRVDFAGTGSNGVLI 376 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G LE SN E+ MI + + + + + M + Sbjct: 377 SGALEQSNVELADELTDMIRAQRGYTANSKVFQTGADLMDVIVN 420 >gi|254785371|ref|YP_003072800.1| flagellar basal body protein FlgE [Teredinibacter turnerae T7901] gi|237685119|gb|ACR12383.1| Flagellar basal body protein FlgE [Teredinibacter turnerae T7901] Length = 813 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASG 62 FN L+ A L+ +N++N T+GF+ + +F +V + + S V Sbjct: 3 FNTALSGIRAASTDLTVTGNNIANASTIGFKRSRAEFGDVFATSVLGAGANAIGSGVQVE 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + + G+ T ELD A+ G+ +F L + +R G F + D G + + G Sbjct: 63 DVAQNFKQGNVAFTQNELDLAINGNGFFVLSDQGTPVYSRAGTFGLDDQGYVTNNVG 119 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 + E G I +G+ +A + L QG N+ P TP Sbjct: 702 LAIDENGVIFARYTNGEGQPLAQVALADFTNQQGLQPIGNTMWAESFASGPPNVGTPQSG 761 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE+SN + E+ ++I + F + I+ ++ I Sbjct: 762 ALGA-IQSGALEESNVDLSEELVRLIIAQRNFQASAKTIETADQVTQTIIN 811 >gi|34498340|ref|NP_902555.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] gi|34104194|gb|AAQ60553.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] Length = 416 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 F GL+ A +L ++ +N++N +TVGF++ + +F ++ + + V+ Sbjct: 2 GFQQGLSGINAASVQLDSIGNNVANANTVGFKSSRTEFGDLYAQSIFGTAANSPGNGVSV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGK 120 + G+ +TG LD A+ + +F + P G +RDG+F+V G LV++ G Sbjct: 62 LAVTANMSAGNTENTGRSLDLAINNNGFFIMNQPNGTQTYSRDGQFQVNSQGYLVNSYGA 121 Query: 121 Y 121 Y Sbjct: 122 Y 122 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P ++ G + + K + + L + QG + + P Sbjct: 300 PGLLTGVSIASNGVVQATFSNSQTKTLGQVALATFVNPQGLLNLGGNQWQQSGNSGPATV 359 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P +G T+ G +EDSN N E+ MI + + + I + + + Sbjct: 360 NQPGTGNAG-TLTAGSVEDSNVNLTNELVNMITAQRYYQANAQTIKTQDTLIQTLLN 415 >gi|157415947|ref|YP_001483203.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 81116] gi|157386911|gb|ABV53226.1| hypothetical protein C8J_1629 [Campylobacter jejuni subsp. jejuni 81116] Length = 852 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 740 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 799 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 800 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 849 >gi|253990127|ref|YP_003041483.1| flagellar hook protein FlgE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781577|emb|CAQ84740.1| flagellar hook protein flge [Photorhabdus asymbiotica] Length = 404 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 67/149 (44%), Gaps = 12/149 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N T GF++ F+++ + + K+S + Sbjct: 2 AFSQAVSGLNAAAANLDVIGNNIANAATYGFKSSSAAFADIFAGSQVGLGVKMSGINQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--- 119 + + G+ +T LD A+ +F ++S G +R+G FK+ ++ ++++ G Sbjct: 60 ---NFKDGTPTTTNRTLDMAITQGGFFRMQSSDGTIRYSRNGEFKLDENRNIINMQGMKL 116 Query: 120 -KYPVLDMAS--VPIQIPQKDEIFNVGEK 145 YP + + IQ E + + Sbjct: 117 TGYPAVSVNGGAPEIQKGANPEPITISQD 145 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 12/110 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 + + + G + + +V+ + L + +G + ++ +I Sbjct: 293 YRIEKDGRVIGTYSNLQSQVLGQIVLTNFANPEGLAAQGDNVWVETGASGSSIIGIAGSG 352 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G + LE SN + E+ MI + + S I ++ + + Sbjct: 353 GFG-ELLSSTLEASNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILQTLV 401 >gi|157371207|ref|YP_001479196.1| flagellar hook protein FlgE [Serratia proteamaculans 568] gi|157322971|gb|ABV42068.1| flagellar basal body FlaE domain protein [Serratia proteamaculans 568] Length = 407 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 71/161 (44%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ V F+++ + + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATSGFKSGTVSFADMFAGSQVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG--- 119 + + G+ T LD A+ G+ +F ++ G+ +R+G+FK+ ++ +L + G Sbjct: 60 ---NFKGGTTTGTSRALDVAISGNGFFRMQDQDGGVFYSRNGQFKLDENRNLTNMQGLQL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP VP+ IP+ G + Sbjct: 117 TGYPAAGTPPTIQQGANPVPLSIPEGMMNAKASTSGTMVAN 157 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTP----LE 187 F + G + +Q+ +V+ + + + +G + ++ P Sbjct: 294 TNFQINNDGTVVGIYSNQQTQVLGQIVMANFSNPEGLSSQGDNVWQETGASGQPRVGIAG 353 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G LE SN + E+ MI + + S I + + + Sbjct: 354 GGGFGKLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLV 404 >gi|283784085|ref|YP_003363950.1| lateral flagellar hook protein [Citrobacter rodentium ICC168] gi|282947539|emb|CBG87091.1| lateral flagellar hook protein [Citrobacter rodentium ICC168] Length = 400 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S+ I A+ ++L +++N++N TVG++++ FS + Q + +G Sbjct: 2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTDFSAMYAD-----SQAMGVSVAGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGIILTRDGRFKVTDDGSLVSASG--- 119 GS +STG LD A+ +F + +S I TR G F+ +G +V+ASG Sbjct: 57 AQSIARGGSMVSTGNALDLAINNGGFFVMCDSAGNITYTRAGSFETDKNGYIVNASGACL 116 Query: 120 -KYPVLDMAS 128 YPV + Sbjct: 117 QGYPVDGSGT 126 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 50/131 (38%), Gaps = 12/131 (9%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR-RE 173 V+ + +Q+ +++ GE +G+++ L + G Sbjct: 273 VTTNSANGYASATQNGVQVDDDGKVYATYSNGERMLQGQIV----LATFPNENGLEAVSG 328 Query: 174 NSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + + + L + G T+ G LE SN + E+ +++ + + + T +I Sbjct: 329 TAWVQTGESGSALIGVPGSGSCGTLSSGMLESSNVDITTELVELMTAQRNYQANTKVIST 388 Query: 230 N---EKSMLEA 237 + + ++ +A Sbjct: 389 STQLDDALFQA 399 >gi|309779447|ref|ZP_07674208.1| flagellar hook protein FlgE [Ralstonia sp. 5_7_47FAA] gi|308921688|gb|EFP67324.1| flagellar hook protein FlgE [Ralstonia sp. 5_7_47FAA] Length = 404 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 10/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 F GL+ A + L + N++N +TVG++ +F + +VGA N I Q +S Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVSV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVS 116 + + G+ TG LD A+ G ++ + + + TR+G+F+ +G ++S Sbjct: 62 TKVSQAFT---QGNVTITGNPLDIAINGSGFYRMVDQGSGQVSYTRNGQFQTDKNGYVIS 118 Query: 117 ASGK 120 A+G+ Sbjct: 119 ATGQ 122 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 ++VG G I+ + V+ + + + +G + + + P G+ Sbjct: 292 SYSVGTDGTITGRYSNGRTSVLGQIAMANFKAPEGLQNIGGNQWVETSNSGAPGLGTPGM 351 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ +E SN + E+ MI + + + I + + + Sbjct: 352 GSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLV 401 >gi|154250212|ref|YP_001411037.1| hypothetical protein Fnod_1537 [Fervidobacterium nodosum Rt17-B1] gi|154154148|gb|ABS61380.1| protein of unknown function DUF1078 domain protein [Fervidobacterium nodosum Rt17-B1] Length = 770 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 12/137 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV----KFSEVVG----AIKNDI 52 M S G++ +Q + V++N+SN +T+GF+ +V FS+++ A N Sbjct: 1 MMRSLYSGVSGLQGFQQEIDVVSNNISNVNTIGFKGARVTYATNFSQILDMSRRATDNTG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKV 108 + G S GSF +TG + D A++G+ +F L + + TR G F + Sbjct: 61 GTNPKQIGYGIRVASIDKIMNQGSFQNTGKKTDLAIQGEGFFILSNGQRQFFTRAGNFDL 120 Query: 109 TDDGSLVSASGKYPVLD 125 +G++V + + Sbjct: 121 DLNGTIVQPTTGLKLQG 137 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 E F++ E G+I G V+ + L + + G + NS + P Sbjct: 656 ESFSISENGDIIGSFTNGLVDVLGKVALATFNNPAGLLELGNSLYGESANSGTARIGQPS 715 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G V G LE SN + E ++I + F + I ++ + E + Sbjct: 716 KGGFGSLVA-GALEMSNVDLSEEFTKLIIAQRGFQANARTITTADQILQEVVN 767 >gi|239906013|ref|YP_002952752.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] gi|239795877|dbj|BAH74866.1| flagellar hook protein FlgE [Desulfovibrio magneticus RS-1] Length = 550 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 21/182 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFV 59 TS G++ LA ++ T+ +N++N +T GF+ + F +++ A + Q V Sbjct: 7 TSMWSGVSGLLANSTKMGTIGNNLANVNTYGFKGARTDFMDLMSANVGTAAGVKQIGRGV 66 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRGIIL---------TRDGR 105 G G +T LD A+ G+ +F ++ G +L TR G Sbjct: 67 RVGTIVSDYSQGGLETTSENLDMAISGNGFFMVKQKSQVGSNGKMLNTGNTTTYYTRAGD 126 Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 F DG LV+ G V +I V + ++ + I + L Sbjct: 127 FSFDSDGYLVTPQG-LAVQGWKVDQDRIDAASASGTVLSQVPVTGE---IQDIRLTQFTS 182 Query: 166 SQ 167 Sbjct: 183 PA 184 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED---- 188 +V G ++ + + + + L + QG R+ ++ + + Sbjct: 436 TSVSVDSDGILTGTFSNGQTQKLWALALANFTNLQGLSRQGSNLYAATLDSGQGTTNRAN 495 Query: 189 -LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S ++ LE SN + EM MI + F + + I + + E I+ Sbjct: 496 TGSVGSISGNTLETSNVDLATEMVSMILTQRGFEANSKTITTVDSMLSEVIQ 547 >gi|134095097|ref|YP_001100172.1| flagellar hook protein FlgE [Herminiimonas arsenicoxydans] gi|133739000|emb|CAL62048.1| Flagellar hook protein FlgE [Herminiimonas arsenicoxydans] Length = 418 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF GL+ A + L + +N++N+ TVGF+ +V+F+++ + + + + Sbjct: 2 SFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAAQIGIGTQI 61 Query: 64 EYLS--KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 ++ G+ ++ LD A+ GD +F + S I R+G+F+++ +G + SASG Sbjct: 62 ARVAQLFSQGNITASNNPLDMAINGDGFFRMSSGGTISYARNGQFELSKEGFIQSASG 119 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P FNV G I G V+ + L S G ++ + L Sbjct: 301 PGTLTAFNVASDGSIVGRYSNGKVNVLGQVILSSFANPNGLQNIGDNQWVETAESGVALT 360 Query: 188 DLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + V+ +E+SN + E+ MI + + + I ++ + + Sbjct: 361 SAPGSSGLGSVQSARIEESNVDLTAELVNMITAQRYYQANAQTIKTQDQILQTLVN 416 >gi|254439743|ref|ZP_05053237.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198255189|gb|EDY79503.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 1412 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 14/181 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVAS 61 SF L + ++ ++N++N T GF+ + +F ++ ++N S Sbjct: 2 SFYTALTGLNGAQADIAASSNNIANVGTTGFKLSRAEFGDIFATSPLQNSTSSIGSGAIL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 G+ ++ LD A+ G +FAL+ + ++ TR+G F V ++ ++V +S Sbjct: 62 KGVKQQFTQGNISASLNALDMAISGQGFFALKPSLTSTQVVYTRNGSFNVDNNRNVVDSS 121 Query: 119 GK----YPVLDMASVPI-----QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 G+ YPV + SV +P + + + +G V V +Q F Sbjct: 122 GQFLLTYPVNEDGSVTAKDIDSAVPLRLPVTSGDPQGTTKVDLAVNVPANADVVTENQKF 181 Query: 170 V 170 V Sbjct: 182 V 182 Score = 72.0 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV- 192 N+ G + K + + L + + G + N+ P+ +G Sbjct: 1300 LNIDSNGLLRANYTNGQNKPLGKIVLANFNNQNGLKQVGNATFVETASSGEPIIGEAGTE 1359 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ G LE SN + E+ +I + F + + I+ + + I Sbjct: 1360 GFGSIQSGALERSNVDITEELVNLITAQRNFQASSKAIETSTQLTQTIIN 1409 >gi|37681979|gb|AAQ97867.1| FlgG [Photorhabdus luminescens] Length = 150 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 16/153 (10%) Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK------ 151 TRDG F+ +G L +A+G I IP + G +S K Sbjct: 2 SAYTRDGSFQEDQNGQLTTANGFL-----IFPTITIPDNATDLTISSDGIVSVKVQGQSV 56 Query: 152 GKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANS 206 + + L + G EN + + P+E+ G+ ++ ++E SN N Sbjct: 57 PQQVGQFTLTTFINDSGLESIGENLYVETSSSGVPIENTPGINGAGLLQHKYVETSNVNI 116 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ MI + + + + +++ + + + Sbjct: 117 AEELVNMIQTQRAYEVNSKAVSTSDQMLQKLTQ 149 >gi|332799182|ref|YP_004460681.1| flagellar hook-basal body protein [Tepidanaerobacter sp. Re1] gi|332696917|gb|AEE91374.1| flagellar hook-basal body protein [Tepidanaerobacter sp. Re1] Length = 411 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 12/136 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDID 53 S G+ + ++ + +N++N +TVGF+ +V F + + N Sbjct: 1 MRSMFSGVTGLRNHQVKMDVIGNNIANVNTVGFKKSRVTFQDTLSQTMRGAASPQGNRGG 60 Query: 54 QKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 V G S S TG D ++EGD +F + + TR G F Sbjct: 61 TNPMQVGLGMTIASIDTIHSPSSAEYTGNMTDLSIEGDGYFIVGDGLDMFYTRAGNFGFD 120 Query: 110 DDGSLVSASGKYPVLD 125 ++G+L++ + V+ Sbjct: 121 ENGNLINTANGLKVMG 136 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 5/93 (5%) Query: 152 GKVIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT----VKRGFLEDSNANS 206 + +A + L + D G ++ + N P SG + G+LE SN + Sbjct: 316 NRQLAQVALANFDNPAGLIKAGQNMYRYSNNSGEPQIGESGTGGRGAIAPGYLEMSNVDL 375 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E QMI + F + + +I +++ + E + Sbjct: 376 SEEFTQMIITQRGFQANSRIITTSDEMLQELVN 408 >gi|319409169|emb|CBI82813.1| Flagellar hook protein FlgE [Bartonella schoenbuchensis R1] Length = 403 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 6/134 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLS VA+N++N +T+G++ V+FS V D Sbjct: 6 MMR---TGVSGMNAQGTRLSGVAENVANVNTIGYKRTDVQFSNYVIP-SGDYAYVPGGAR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 S + G +TG D ++G+ +F + GI TR G F DG + + +G Sbjct: 62 SYVGHDISISGPARATGRMGDVMIDGNGFFRVADENGIEYLTRAGSFSRDKDGYVRNLAG 121 Query: 120 KYPVLDMASVPIQI 133 Y +LD +QI Sbjct: 122 YY-LLDEDGQRVQI 134 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLED 188 F G GEI + +V+ +G+ +V + V NS + P + Sbjct: 291 FTFGRNGEIEVRYTNHQMRVVGYVGMTTVTSPESLTVLSGSVFGTNSRTGGQMMGRPGDG 350 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G+ + G+LEDSN E+ MI + + + + + + M + Sbjct: 351 VFGL-LFSGYLEDSNVEMSDELTDMIEAQRNYTANSKVFQTGSELMDVIVN 400 >gi|255592000|ref|XP_002535648.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] gi|223522414|gb|EEF26735.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] Length = 230 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 30/220 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFV 59 MQ + L + QRL N++N T G++ V + +GA + Sbjct: 1 MQEVLALALQSMQQDMQRLDRTGLNLANALTPGYQREVVSARPLRLGAPSFAAMVGTAAA 60 Query: 60 ASGK----------------EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRD 103 A+ G+ STG LD AL G +F + +P G TR Sbjct: 61 AAVADNAPAASPHAPAAGLLVQTDHRPGTLRSTGQNLDVALAGAGYFEVSTPGGPAYTRQ 120 Query: 104 GRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ------KGKVIAT 157 G F++ G LV+A G + V+ I + + +G I + +A Sbjct: 121 GSFRLDAQGRLVTAQG-HAVMGRGGE---ILLQSSQVRIDAQGNIFDGDGVGRTDRPVAQ 176 Query: 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLE-DLSGVTVKR 196 + + R +S I P + + + +++ Sbjct: 177 LKVVEAPQPSQLRRLGEGLMS--IDGQPGQLADADIRIQQ 214 >gi|319898656|ref|YP_004158749.1| flagellar hook protein FlgE [Bartonella clarridgeiae 73] gi|319402620|emb|CBI76165.1| Flagellar hook protein FlgE [Bartonella clarridgeiae 73] Length = 402 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLS VADN++N TVG++ V+FS V V Sbjct: 6 MMR---TGVSGMNAQGTRLSGVADNVANAGTVGYKRTNVQFSNYVTP-SGQYAYVPGGVK 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G +TG D + G+ +F + G LTR G F DG L + +G Sbjct: 62 SHIGHDISISGPAHATGRSGDAMIHGNGFFRVADENGKEFLTRAGSFTRDKDGYLRNTAG 121 Query: 120 KYPVLDMASVPIQI 133 Y +L+ IQI Sbjct: 122 YY-LLNEDGERIQI 134 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 13/137 (9%) Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQG 168 LV+ G + + ++ D F G+ GEI +QK +++ +G+ +V + Sbjct: 265 LVTQKGNLFAFEAEADGMESGAFDG-FTFGKNGEIEVMYSNQKTRIVGYVGITTVASPES 323 Query: 169 FVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 S N P + + G T+ G+LEDSN + E+ MI + + + Sbjct: 324 LTFLGGSVFETNSQTGAQMMGRPGDGVFG-TLSSGYLEDSNVDMGDELTDMIEAQRNYTA 382 Query: 223 ITTLIDENEKSMLEAIR 239 + + + M + Sbjct: 383 NSKVFQTGSELMDVIVN 399 >gi|302874597|ref|YP_003843230.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|307690792|ref|ZP_07633238.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] gi|302577454|gb|ADL51466.1| fagellar hook-basal body protein [Clostridium cellulovorans 743B] Length = 474 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 40/167 (23%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M G+ A + +L + +N++N T F++ ++F++ + Sbjct: 1 MIKGMYSGITGLKANQTKLDVIGNNIANVGTTAFKSSSIRFTDSLYQNMTSASAPGYNLG 60 Query: 53 DQKISFVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALES-------------- 94 S V G + + G+ +TG+ LD A++GD +F + + Sbjct: 61 GTNPSVVGLGVKVSAVTTNMTQGNLQNTGSNLDCAIDGDGFFMVATGPLPTGNEFGVTLD 120 Query: 95 ----------PRGIILTRDGRFKVTDDGSLVSASG----KYPVLDMA 127 G+ TRDG F + DG+L+S SG YP+ + Sbjct: 121 TLSHSIINGNGMGVNYTRDGSFSLDADGNLLSNSGYRILGYPLQETG 167 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 24/139 (17%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 V+A G+ + + I + I V + G ++ G+ + + + + G + N Sbjct: 343 VNADGEKAIKNFN-----IEKNGVIKGVLQDGRVTVLGQ----LAMSTFKNTVGLQKLGN 393 Query: 175 SGISPNI-PPTPL-------------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 + + + P+ ED G V G +E SN + + +MI ++ F Sbjct: 394 NLYNVSANSGEPIIRSSVGTEKDRSNEDAFGSCVN-GVVEMSNVDLAEQFTEMIVASRAF 452 Query: 221 NSITTLIDENEKSMLEAIR 239 + + +I +++ + E ++ Sbjct: 453 QANSKIITTSDEILQELVQ 471 >gi|167576662|ref|ZP_02369536.1| flagellar hook protein flgE [Burkholderia thailandensis TXDOH] Length = 395 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L+T++ N++N++T GF+ + F+ +V + + S S Sbjct: 2 SFNIALSGINAINSQLNTISHNIANSNTYGFKAGRANFATMVAGTQANGTYIGSTTQSVG 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA 117 G F+ TG LD A++G+ +F + G + TR G FK DG +V Sbjct: 62 TR-----GGFLPTGRALDGAIDGNGFFVTKDSDGSTLFTRVGYFKRDADGYIVDG 111 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 15/142 (10%) Query: 115 VSASGKYPVLDMASVPIQIPQKD-----EIFNVGEKGEI---SQKGKV--IATMGLYSVD 164 V+ +G V + + + E G + GK + ++ L + Sbjct: 254 VNYAGTTQVAGEPTTTVNRDNGYAAGVPGEVTLDEDGGVVVQYSNGKQRKVGSLALATFA 313 Query: 165 MSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQK 219 G ++ + PL +G V G LE SNA+ E+ M+ + Sbjct: 314 NQDGLTAVGDTAWRASAASGNPLIGSAGSGALGKVVAGSLELSNADVTKELVDMMSAQRN 373 Query: 220 FNSITTLIDENEKSMLEAIRNI 241 + + + ++ + M ++ + Sbjct: 374 YQANSKVLSTENQMMQALMQAL 395 >gi|300722682|ref|YP_003711972.1| flagellar hook protein [Xenorhabdus nematophila ATCC 19061] gi|139522504|gb|ABO77656.1| FlgE [Xenorhabdus nematophila] gi|297629189|emb|CBJ89785.1| flagellar biosynthesis; hook protein [Xenorhabdus nematophila ATCC 19061] Length = 398 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 7/144 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N+SN+ T GF++ F++V + + K+S + Sbjct: 2 SFSQAVSGLNAAASNLDVIGNNISNSATFGFKSSSAAFADVFSGSEVGLGVKVSGM---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + + GS +T +LD A+ +F ++ G I+ +R+G+FK+ +D +L++ G Sbjct: 58 -VQNFKDGSTTTTNRKLDMAINQGGFFRMQDSNGNILYSRNGQFKMDEDRNLINMQGMKL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVGEK 145 + IQI ++ Sbjct: 117 TGYPAVNGEIQIGGAVGPISIPTD 140 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 + V + G+I + +V+ + L + +G + ++ ++ Sbjct: 285 TDYRVDDDGKIYGVYSNDQKQVLGQIVLANFANPEGLAAQGDNVWAESGASGSSVIGVAG 344 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G + G LE SN + E+ MI + + S I ++ + + Sbjct: 345 SGNLG-NLISGALEASNVDMSQELVNMIVSQRNYQSNAQTIKTQDQILQTLV 395 >gi|154174192|ref|YP_001407320.1| flagellar hook protein FlgE [Campylobacter curvus 525.92] gi|112803531|gb|EAU00875.1| flagellar hook protein FlgE [Campylobacter curvus 525.92] Length = 819 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 25/198 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-------- 52 M S G++ A + + +N++N +T G++ + F++++ Sbjct: 1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTYGYKYNRANFADILSQTPRVATAPQGELG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 Q + G S G+ ST + D AL+G+ +F + G TR+G F Sbjct: 61 GQNPMQIGLGTTINSTTRIFSQGTLTSTDKQTDLALQGNGFFIVSPDGGTTRYYTRNGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 G+ V+ SG + V +E + G I ++ GL + + Sbjct: 121 VRDKAGNFVNNSG-HIVQGWTR-------DEETGTIDSTGPIK---NIVIKEGLTTPARA 169 Query: 167 QGFVRRENSGISPNIPPT 184 V+ + + S N Sbjct: 170 TTEVKIKGNLDSGNTIGA 187 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENS------GISPNIPPTPL 186 + E G I GK +A + L + ++G + + Sbjct: 705 RDIKIDETGTIIGAFTNGKSFGLAQVALATFTNNEGLQSEGGNVFSQTANSGEAVIGAAG 764 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G TV LE SN + + +I + + F + + I +++ + ++ Sbjct: 765 TGDKG-TVAASKLEASNVDLSRALTDLIVIQRGFQANSKTITTSDEMLNTLLQ 816 >gi|145297454|ref|YP_001140295.1| flagellar hook protein FlgE [Aeromonas salmonicida subsp. salmonicida A449] gi|142850226|gb|ABO88547.1| lateral flagellar hook protein LfgE [Aeromonas salmonicida subsp. salmonicida A449] Length = 397 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+IGL+ A+ Q LS +++N++N T GF++ + +F+ + G N++ Q Sbjct: 2 SFSIGLSGLRAVNQELSVISNNVANASTAGFKSSRAEFAAIYGVEMNNVSQN-------- 53 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G + TG LD A+ G +F L+ G TR G F+ L +A+G Sbjct: 54 ---FDRNGDVMRTGKGLDLAISGSGFFVLKDSNGQTSYTRAGMFQRDASNYLTTANG 107 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 12/107 (11%) Query: 140 FNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 V G + G+ + + + + G ++ N+ + P Sbjct: 286 VKVDADGGVYATFTNGQNLLQGQVVMANFTNPNGLIQTNNTTWQQSFSSGQPVLGAPGTG 345 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 G ++ G E SN + E+ ++ + + + I +K Sbjct: 346 TMG-SLTAGAYESSNVDLTGELVSLMTSQRNYQANAKTISSADKMTQ 391 >gi|148980302|ref|ZP_01815989.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] gi|145961321|gb|EDK26631.1| flagellar hook protein E [Vibrionales bacterium SWAT-3] Length = 408 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A L+T+++N++N T GF+ + +F+ V + + V + Sbjct: 2 SFSIALSGLNASNSELNTISNNIANVSTTGFKESRTEFASVYSGSEAG---GVEVVGVSQ 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + ++ G+ TG LD AL G+ +F LE +G + TR G F + DG + + SG Sbjct: 59 NF--EKSGTVTGTGRSLDMALSGNGFFVLEDSKGQTLYTRSGIFNMNADGVITANSGAAL 116 Query: 120 -KYPVLDMAS 128 Y V + Sbjct: 117 QGYSVDGNNN 126 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 11/137 (8%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGF 169 V+ G V+ S + G I + ++ + L Q Sbjct: 272 VTQFGSDFVVSKNSPNGSTSGDYASVRMENDGRIFATYTNGQSQLQGQVVLADFASPQNM 331 Query: 170 VRRENSG-ISPNIPPTPLEDLSGVTV----KRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++ ++ + TP+ +G V G LE SN + E+ ++ + + + T Sbjct: 332 IKTSDTAWLQSFSSGTPVLGTAGSGVFGDLTSGALEGSNVDLTSELVALMTAQRNYQANT 391 Query: 225 TLIDENEKSMLEAIRNI 241 I +++ + +A+ N+ Sbjct: 392 KSISTSDQ-LTQALFNV 407 >gi|258511381|ref|YP_003184815.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478107|gb|ACV58426.1| fagellar hook-basal body protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 335 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 24/143 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---------- 50 M S N ++ A + L V +N++N +TVGF+ V+F++++ + Sbjct: 1 MLRSMNSAISGMQAFQTDLDVVGNNIANVETVGFKQSDVQFADLLSQTMSLGTAGTAPNP 60 Query: 51 --------------DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + +Q V + G +TG + A++G+ +F + + Sbjct: 61 GTGSSGATTGIGGTNPEQVGLGVQVAATQMDMSQGPDETTGVPTNVAIQGNGFFVVTNGT 120 Query: 97 GIILTRDGRFKVTDDGSLVSASG 119 LTR G F V G+LV +G Sbjct: 121 STYLTRAGNFSVDSAGNLVLPNG 143 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 23/127 (18%) Query: 135 QKDEIFNVGEKGEISQK---------------GKVIATMGLYSVDMSQGFVRRENSGISP 179 + ++G G ++ V+ + L V QG V ++ S Sbjct: 206 SQVSNVSIGANGALTATLTLTPSSGSGSPSTQTVVLGYLALAQVPNPQGLVSVGDNLFSA 265 Query: 180 NIPP-------TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 + P TP + G T+ G LE SN + + +MI + + T +I + Sbjct: 266 SSPAAGTPTYWTPGQGTYG-TLASGELEGSNVDLSQQFAEMIVAQNAYVANTHMIGTDNA 324 Query: 233 SMLEAIR 239 + + Sbjct: 325 ILQALVN 331 >gi|217976240|ref|YP_002360387.1| flagellar hook protein FlgE [Methylocella silvestris BL2] gi|217501616|gb|ACK49025.1| flagellar basal body FlaE domain protein [Methylocella silvestris BL2] Length = 414 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A +LSTV+DN++N+DT G++ +F ++ S VA+ Sbjct: 5 SALTASVSGMAAQANKLSTVSDNIANSDTTGYKQAMTEFENLISQAGTSSYNA-SGVATV 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 Y E G+ ST + D A++G+ +F + G + LTR G FK G+LV+A+G Sbjct: 64 VRYNISEHGNLKSTTSSTDLAIQGNGFFLVGDANGSVFLTRAGNFKPDATGNLVNAAG 121 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 134 PQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGF------VRRENSGISPNIP 182 P + ++ G +S+ K I T+ L +V V +NS P + Sbjct: 296 PSAVQSVSISPDGTLSEVFVNGTQKAIFTIPLATVASVDNMTSLAGDVFSDNSLSGPILV 355 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P G +++ LE S + ++ MI + + S + + + +L + N+ Sbjct: 356 GDPGLGGFG-SIQSEKLESSTVDLASQLTDMIVAQRSYESNSKVFQTGSE-LLSTLNNM 412 >gi|167750722|ref|ZP_02422849.1| hypothetical protein EUBSIR_01700 [Eubacterium siraeum DSM 15702] gi|167656401|gb|EDS00531.1| hypothetical protein EUBSIR_01700 [Eubacterium siraeum DSM 15702] Length = 521 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 14/154 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ +Q++ + +N++N +T GF+T F EV K + + Sbjct: 1 MVRSLFSGVSGLKTHQQKMDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQG 60 Query: 61 S------------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 G F + + D AL GD +F + G I +R G F Sbjct: 61 GVNPSQVGYGTKLGAIGQVMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFN 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 V + G+LV ++G VL ++ + Sbjct: 121 VDNAGNLVDSNGNM-VLGVSGDATGVDASSNRIT 153 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 10/131 (7%) Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSVDMSQGFVRRE 173 G + D Q + + + E G I V + + + + D G + Sbjct: 388 GNIKMTDGRVAATQTVKDLDSVYINEDGTIYGVHSVHGIIMLGRIDIVTFDNPNGLEQVG 447 Query: 174 NSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +S + P +++G +V G LE SN + E MI + F + + +I Sbjct: 448 SSYWRETLSSGQPQVNIAGENGSASVVSGALEMSNVDLSQEFSDMIITQRGFQANSRIIT 507 Query: 229 ENEKSMLEAIR 239 ++ + E + Sbjct: 508 TSDTMLEEIVN 518 >gi|212709492|ref|ZP_03317620.1| hypothetical protein PROVALCAL_00534 [Providencia alcalifaciens DSM 30120] gi|212687830|gb|EEB47358.1| hypothetical protein PROVALCAL_00534 [Providencia alcalifaciens DSM 30120] Length = 422 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 12/149 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L ++ +N++N+ T GF+ F+++ + ++ V Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + + G T D A+ G+ +F ++ G + +RDG+F G+LV+ G Sbjct: 60 ---NFKDGPITRTDRATDVAISGNGFFRVQDQNGDVYYSRDGQFLRDKSGNLVNNQGMVV 116 Query: 120 -KYP--VLDMASVPIQIPQKDEIFNVGEK 145 YP V D +V +Q N+ Sbjct: 117 TGYPASVDDKGNVTVQSGGVPGGMNIPTD 145 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F + + G I +Q+ +V+ + L + G V + + + N P++ + G Sbjct: 309 TTFKIEDNGLIVANYSNQQKRVVGQIALSAFANPNGLVSQGGNVWAASNASGNPMDGVPG 368 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + G LE SN + E+ MI + + + S I ++ + + Sbjct: 369 VGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVN 420 >gi|149191153|ref|ZP_01869411.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148834991|gb|EDL51970.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 408 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 14/208 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A L+T+++N++N T GF+ + +F+ V + + V + Sbjct: 2 SFSIALSGLNASNSELNTISNNIANVSTTGFKESRTEFASVYSGSEAG---GVEVVGVSQ 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + ++ G+ TG LD AL G+ +F LE +G + TR G F + DG + + SG Sbjct: 59 NF--EKSGTVTGTGRSLDMALSGNGFFVLEDSKGQTLYTRSGIFNMNADGVITANSGAAL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 Y V ++ + +I + + + +A + + F ++S + Sbjct: 117 QGYSVDGNNNLLLGSVGTVQISTASLQARETDSIEFVANLDAREQVPAAAFDYSDSSTYN 176 Query: 179 PNIPPTPLEDLSGV--TVKRGFLED-SN 203 + TP+ D G TV + F++ SN Sbjct: 177 HS-YTTPVYDSLGNPHTVSQYFVKGASN 203 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 11/137 (8%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGF 169 V+ G V+ S + G I + ++ + L Q Sbjct: 272 VTQFGSDFVVSKNSPNGYTSGDYASVRMENDGRIFATYTNGQSQLQGQVVLADFAAPQNL 331 Query: 170 VRRENSG-ISPNIPPTPLEDLSGVTV----KRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++ ++ + TP+ +G V G LE SN + E+ ++ + + + T Sbjct: 332 IKTSDTAWLQSFSSGTPVLGTAGSGVFGDLTSGALEGSNVDLTSELVALMTAQRNYQANT 391 Query: 225 TLIDENEKSMLEAIRNI 241 I +++ + +A+ N+ Sbjct: 392 KSISTSDQ-LTQALFNV 407 >gi|163802603|ref|ZP_02196495.1| flagellar hook protein E [Vibrio sp. AND4] gi|159173686|gb|EDP58505.1| flagellar hook protein E [Vibrio sp. AND4] Length = 437 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 17/163 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ + + L+T ++N++N +T GF+ + +F +V N + + Sbjct: 3 YVSLSGLSSAQLDLNTTSNNIANANTYGFKESRAEFGDVYSNSLFSNAKTTPGGGAQASQ 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +F++ +P+ +TR+G F + D +V+A+ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGTGFFSVAKERLTPQQNEMTRNGAFHLNKDNYMVTAND 122 Query: 120 ----KYPVLDMAS-------VPIQIPQKDEIFNVGEKGEISQK 151 Y V + I IP + E E+ Sbjct: 123 EFLLGYQVDPDSGEVASYEPQAINIPAEFGKPKQTENIEVGVN 165 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LE 187 + E G + G+ + + L V QG ++ + Sbjct: 324 TKVDFDENGNVLGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQNSGAKVWGESN 383 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S T+ G LE SN + E+ +I + F + + + E + + + I I Sbjct: 384 KGSFGTISNGTLEQSNIDMTQELVDLISAQRNFQANSRAL-EVDNQLQQNILQI 436 >gi|152980177|ref|YP_001353111.1| flagellar hook protein FlgE [Janthinobacterium sp. Marseille] gi|151280254|gb|ABR88664.1| FlgE flagellar hook protein [Janthinobacterium sp. Marseille] Length = 416 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID--QKISFVAS 61 SF GL+ A + L + +N++N+ TVGF+ +V+F+++ + + Q V Sbjct: 2 SFQQGLSGLNAASKSLEAIGNNVANSGTVGFKQSQVQFADIYASTLSGSGAAQIGIGVQV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ + LD A+ GD +F + S I R+G+F++T +G + +ASG Sbjct: 62 ARVAQLFSQGNIAVSNNPLDMAINGDGFFRMSSGGSITYGRNGQFELTKEGYIQNASG 119 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENS----GISPNIPPT 184 P F+V G I G+V + + L S G ++ +P T Sbjct: 299 PGTLTGFDVASDGSIMGRYSNGEVNVLGQVILSSFANPNGLQNIGDNQWVETAESGVPLT 358 Query: 185 PLEDLSGVTVKRGF-LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG+ V + +E+SN + E+ MI + + + I ++ M + Sbjct: 359 STPGSSGLGVVQSARIEESNVDLTAELVNMITAQRVYQANAQTIKTQDQIMQTLVN 414 >gi|116626495|ref|YP_828651.1| hypothetical protein Acid_7458 [Candidatus Solibacter usitatus Ellin6076] gi|116229657|gb|ABJ88366.1| protein of unknown function DUF1078 domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 421 Score = 115 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 17/163 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFV 59 M TSF+ L+A A + V +N++N +T GF+T V F ++V ++ + + Sbjct: 1 MFTSFSTALSALSATATAVDVVGNNLANLNTPGFKTNVVYFRDLVTQSLGAGLGETQVGF 60 Query: 60 ASGKEYL--SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 +G+ G+ S+ LD A++GD +F ++ +G + TR G F+V D G+L + Sbjct: 61 GTGRPLTIRQFTQGAIQSSTGLLDAAVQGDGFFVAKNAQGNTVYTRAGNFQVDDAGNLKT 120 Query: 117 ASGKYP-----------VLDMAS--VPIQIPQKDEIFNVGEKG 146 +G+ VLD I +P + G Sbjct: 121 NTGESVQGWTSLDSTTGVLDTNGAIGDIVVPVGAAKQPIASTG 163 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 154 VIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVT----VKRGFLEDSNANSMY 208 V+ + + SV + + N+ + TP L + G +E S + Sbjct: 328 VVGQVAMASVRNPESLIAVGNNNYQASARTATPAIGLPNTGGRGDIVGGAIEASTVDIAK 387 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +I L + + + + +I ++ E I Sbjct: 388 EFTNLIVLQRGYQANSRVITTVDELSQETIN 418 >gi|150021173|ref|YP_001306527.1| hypothetical protein Tmel_1293 [Thermosipho melanesiensis BI429] gi|149793694|gb|ABR31142.1| protein of unknown function DUF1078 domain protein [Thermosipho melanesiensis BI429] Length = 705 Score = 115 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 13/143 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV----KFSEVV----GAIKNDI 52 M S G+ +Q + V +N++N T+GF+ +V FS+V+ A + Sbjct: 1 MIRSIYSGVTGLQGFQQAIDVVGNNIANVSTIGFKASRVTYATTFSQVLELSKRATELTG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFK 107 + G + S GSF +TG + D A+ GD +F L G TR G F Sbjct: 61 GTNPKQIGYGVKVASIDKIMSQGSFQNTGKKTDLAIRGDGFFILRDGVGKTYYTRAGNFD 120 Query: 108 VTDDGSLVSASGKYPVLDMASVP 130 + +G+++ + + + P Sbjct: 121 LDVNGTIIQPTSGLKLQGWVAEP 143 Score = 78.5 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 24/146 (16%) Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMG 159 +F T D +V+ +G E F++ E G+I + + Sbjct: 570 QFAATSDAYVVNQNGNAQ------------GTLESFSIAENGDIIGTFSNGLTDKLGKVA 617 Query: 160 LYSVDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L + G + NS + + P +G + G LE SN + E ++ Sbjct: 618 LAIFNNPAGLLEAGNSLYTKSANSGSAIIRQPGFGGAGA-LISGALEMSNVDLSEEFTKL 676 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + F + ++ ++ + E + Sbjct: 677 IIAQRGFQANARVVTTADQILQEVVN 702 >gi|167590742|ref|ZP_02383130.1| flagellar hook protein FlgE [Burkholderia ubonensis Bu] Length = 262 Score = 115 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE-- 69 L + +N++N +TVGF+ + FS++ + +G + ++ Sbjct: 1 MAGASNNLDVIGNNIANANTVGFKQSRAHFSDMYANSVATSVNTQIGIGTGLASIDQQFG 60 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ +TG LD A+ G+ +F + + + +RDG F +G +V + G+ + A+ Sbjct: 61 QGTINTTGNALDVAINGNGFFQMSNNGVVTYSRDGTFHRDKNGFIVDSHGRNLMGYNATA 120 Query: 130 PIQIPQKDEI 139 I + Sbjct: 121 GGVINTAATV 130 >gi|283953666|ref|ZP_06371197.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 414] gi|283794707|gb|EFC33445.1| flagellar hook protein [Campylobacter jejuni subsp. jejuni 414] Length = 864 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 + Q V+ GS +T D A+ GD +F + G+ LTR G F Sbjct: 61 GQNPLQIGLGVSVNSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 752 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 811 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 812 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 861 >gi|163781856|ref|ZP_02176856.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] gi|159883076|gb|EDP76580.1| flagellar hook protein FlgE [Hydrogenivirga sp. 128-5-R1-1] Length = 494 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 11/132 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV- 59 M SF + A + +DN+SN +TV F+ + F +V+ ++ ++ + Sbjct: 1 MLRSFFNAVTGMDASRFWIDVTSDNLSNVNTVAFKAHRPLFQDVISSVTIGLNVVTGTIK 60 Query: 60 ----ASGKEYLSKE----VGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVT 109 +G S + +G+F TG D A++G F L+ P + TRDG+F+++ Sbjct: 61 STTYGAGVVVDSTQKLWNIGNFKQTGVNTDLAIQGRGLFILKDPITGANLYTRDGQFRLS 120 Query: 110 DDGSLVSASGKY 121 DG +V++ G Y Sbjct: 121 RDGYMVTSGGFY 132 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 +++ + E G + GK + + + + ++ + + PT L Sbjct: 385 DVYVLSEDGSVVGVYSNGKSLPLYRVAVAVFTDPEELTKKGANLYTSITTPTILLAGGSE 444 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V+ G LE SN + E +I + + + +I + + E + Sbjct: 445 KVRSGMLEMSNVDIAKEFINLITAQRAYQANARVITTSNTILDETVN 491 >gi|226327746|ref|ZP_03803264.1| hypothetical protein PROPEN_01619 [Proteus penneri ATCC 35198] gi|225203450|gb|EEG85804.1| hypothetical protein PROPEN_01619 [Proteus penneri ATCC 35198] Length = 406 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 20/148 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L T+ +N+SN+ T GF+ V F++V + K++ ++ Sbjct: 2 SFSQAVSGLNAAAANLDTIGNNISNSATYGFKGASVSFADVFAGSGAGLGVKVAGISQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 + + GS +T D A+ G +F +E G+ +R+G F +G L + G Sbjct: 60 ---NFKDGSITTTNRPTDVAISGGGFFRIEDQNGGVFYSRNGEFGKDKNGFLTNMQGMRV 116 Query: 120 -KYPVLDMAS----------VPIQIPQK 136 YPV + PI IP Sbjct: 117 TGYPVQSVDGKNVVQKGATPTPIVIPTD 144 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSG 191 F + + G I +Q+ +V+ + L + + G + ++ N +P+ ++G Sbjct: 293 TNFRIEQDGSIMATYSNQQSQVVGQIALANFANAGGLSSQGDNMWSETNGSGSPIVGVAG 352 Query: 192 VTV----KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V LE SN + E+ MI + + S I ++ + + Sbjct: 353 SGVFGKLTNNALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLV 403 >gi|57504594|ref|ZP_00370706.1| flagellar hook protein FlgE [Campylobacter coli RM2228] gi|57019489|gb|EAL56183.1| flagellar hook protein FlgE [Campylobacter coli RM2228] Length = 845 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTKGFKYSRADFGTMFSQTVKIATAPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 ++ Q V+ G +T D A+ GD +F + G+ LTRDG F Sbjct: 61 GSNPLQIGLGVSVSSTTRIHSQGPVQTTNKNTDVAINGDGFFMVSDDGGLTRYLTRDGDF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ +G Sbjct: 121 KLDAYGNFVNNAG 133 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTP---LEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 733 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTG 792 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 793 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 842 >gi|238028849|ref|YP_002913080.1| flagellar hook protein FlgE [Burkholderia glumae BGR1] gi|237878043|gb|ACR30376.1| Hypothetical protein bglu_1g33140 [Burkholderia glumae BGR1] Length = 412 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 4/189 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ L + +N++N +TVGF+ +FS++ + + + Sbjct: 2 GYQQGLSGLQGASSDLDVIGNNIANANTVGFKAASAQFSDLYANSVSGAVANGIGIGTQL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G F ++ L A+ G+ +F + S TRDG+F G++ +++G Sbjct: 62 ATVAQVFQQGGFATSQNPLSMAISGNGFFQVNSNGVTTYTRDGQFSPNASGNITNSAGGQ 121 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGK--VIATMGLYSVDMSQGFVRRENSGISP 179 + + I + +G I K + L + D +Q S S Sbjct: 122 LMGYGVNADGSINTSAIVPLTAPQGNIPPKATSSITGQFNLSTTDTAQTNSPFNFSDSST 181 Query: 180 NIPPTPLED 188 P++ Sbjct: 182 YTLKQPVQA 190 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 + ++V G I+ G+ + + + + + QG + I P + G Sbjct: 300 QNYSVAADGTITGSYSNGQSMKLGQVFVVNFNDPQGLTSIGGNQYIQTAASGVPQIGVPG 359 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T +K E+S + E+ +I + + + I +++ + + N+ Sbjct: 360 STNHGTIKGSTTENSTVDLTGELVNLITAQRNYQANAQTIKTQ-QTVDQTLLNL 412 >gi|251772436|gb|EES53003.1| probable flagellar hook protein FlgE [Leptospirillum ferrodiazotrophum] Length = 458 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S + + A+ +S + +N+SN +T GF+ + F+ + G + Sbjct: 3 ILSSMYVANSGLSAMGTDMSVIGNNISNMNTNGFKAGRAVFANIYGQTLAGKSNAVGPSQ 62 Query: 61 SGKEYLS------KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G GS +T LD A++G+ +F+ + +G I+ R+G + +G Sbjct: 63 PGSGVYVESIEPLFTQGSVQTTSNALDLAIQGNGFFSFRNRQGAILYGRNGALSLDRNGR 122 Query: 114 LVSASGK 120 +V G Sbjct: 123 IVDQGGH 129 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 10/118 (8%) Query: 135 QKDEIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP-----T 184 + G I G + + + + + G V + +I Sbjct: 341 GDLSNIAIDRAGRIVGSFSNGTEHNLGAIAVSTFNNPNGLVSVGANLYKESIGSGIANIG 400 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 V LE SN + +M MI + + + ++I + + M + I Sbjct: 401 RAGQGGRGQVLANSLEQSNVDLGRQMIDMISAERGYQANASVISADNQLMNTLLTRIG 458 >gi|302670255|ref|YP_003830215.1| flagellar hook protein FlgE2 [Butyrivibrio proteoclasticus B316] gi|302394728|gb|ADL33633.1| flagellar hook protein FlgE2 [Butyrivibrio proteoclasticus B316] Length = 572 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISF 58 M S ++ + + + +N++N +T +++ F +V+ + Sbjct: 1 MMRSLWSAVSGLQTHQLEMDVIGNNIANVNTTSYKSQATGFQDVLYQTIKTGTAGNGVKG 60 Query: 59 VASGKEY-----------LSKEVGSFISTGTELDFALEGDAWFALE----SPRGIIL-TR 102 S + + GS +T D + GD++F + SP TR Sbjct: 61 STSADQVGLGAKMGSININITKPGSAQTTYNPFDLMITGDSFFVVSESQNSPNQEKYFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPI 131 DG F + +GSLV+ + V + I Sbjct: 121 DGSFTIDAEGSLVTQNNGLYVNFIEGEGI 149 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 9/111 (8%) Query: 134 PQKDEIFNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRRENSGISPNI-PPTPLE 187 + + G I G+ + A + + + + G + ++ ++ P+ Sbjct: 455 NGDMNGITISDNGSIYAKYSNGQDVKLAQIVVAEFNNAMGLEKAGDNVYKASLNSGEPIY 514 Query: 188 DL---SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 G + G LE SN + E MI + F + + +I +++ + Sbjct: 515 MDITEDGGYMSSGVLEASNVDLAKEFTDMITTQRGFQANSRVITTSDELLQ 565 >gi|114320057|ref|YP_741740.1| flagellar basal body FlaE domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226451|gb|ABI56250.1| flagellar basal body FlaE domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 430 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 23/188 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND-----IDQKISF 58 SF L A + L+ DN++N+ T GF+ + +F+++ + I Q + Sbjct: 2 SFGTSLTGLNAAQSELNITGDNIANSSTWGFKESRPEFADLFASSNLGVTGLAIGQGVRL 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 G+++ G F T LD + G +F L I TR G F++ +G + +++ Sbjct: 62 QNVGQQF---SQGQFDFTENSLDLGISGKGFFRLSDDGDISYTRSGAFQLDREGWITNSA 118 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 GK F G I G+ + +V R + ++ Sbjct: 119 GKRL---------------TGFAADGDGNIVGDGQQELRVETGNVAPEATTEARIQANLN 163 Query: 179 PNIPPTPL 186 P Sbjct: 164 AGAEIPPA 171 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLSG 191 +V E G I + +V+ +G+ + + ++ P+ +G Sbjct: 317 SSLDVSEDGTIFARFTNGQSEVLGRVGVTKFPSQENLQPVGDTEWVATFEAGEPVVGTAG 376 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ G LE SN + ++ +MI + F++ +I ++ E + Sbjct: 377 TSDFGSIESGALEQSNVDISEQLVKMIVAQRNFSANAKMISTEDQITQEILN 428 >gi|168234103|ref|ZP_02659161.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468943|ref|ZP_03074927.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455307|gb|EDX44146.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331935|gb|EDZ18699.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 425 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIPNT 142 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 308 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 367 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 368 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 423 >gi|330501137|ref|YP_004378006.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina NK-01] gi|328915423|gb|AEB56254.1| flagellar basal body FlaE domain-containing protein [Pseudomonas mendocina NK-01] Length = 395 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI + A+ ++L+T++ N++N T GF++ + +F + Q + Sbjct: 2 SFNIAMTGLSAVNEQLNTISHNIANAGTTGFKSSRTEFGSIYAD-----SQAMGVEVLAT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + GS ++TG LD A+ G +F G + TR G F D ++V+A+G Sbjct: 57 TQSISQGGSLVTTGRSLDLAISGGGFFVTRGGNGDVSYTRAGVFGADKDNNIVNAAGQTL 116 Query: 120 -KYPVLDMAS 128 YPV + Sbjct: 117 QGYPVDAAGN 126 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 12/104 (11%) Query: 140 FNVGEKGEISQK---GKVI--ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLED 188 +V + G + G+ + + L + + G + P Sbjct: 284 LSVEKDGMVYANYSNGQRMLQGQVALATFANAGGLKDVSGTAWVETADSGAALIGVPGVG 343 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G V G LE+SN + ++ ++ + + + T ++ N++ Sbjct: 344 PFGALVA-GSLENSNVDLTQQLVGLMEGQRNYQANTKVLTTNKE 386 >gi|323699248|ref|ZP_08111160.1| fagellar hook-basal body protein [Desulfovibrio sp. ND132] gi|323459180|gb|EGB15045.1| fagellar hook-basal body protein [Desulfovibrio desulfuricans ND132] Length = 541 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 16/133 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-----------DI 52 S +G +A Q +S +A+N++N +T+G++ + F +++ I Sbjct: 5 SMYVGATGVIAHSQGMSVLANNLANVNTIGYKRSDILFGDLISQQVATGGALYDNGDVRI 64 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----LTRDGRFK 107 +Q VA G+ T D A+ G +F + P G I TR G F+ Sbjct: 65 NQMGMGVAVSAIRGIFTEGALSETTEATDLAISGQGFFGVNDPSGTIRGASHYTRAGDFR 124 Query: 108 VTDDGSLVSASGK 120 ++ LV++ G Sbjct: 125 FDNEAYLVNSEGY 137 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT 193 +V E+G +S G+ + + +Y + G R + + T + +G Sbjct: 429 VSVDEEGILSGHFTNGQTEELYQVAVYKFNSPWGLRRDGGTNFVATEASGTAMVGTAGDR 488 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + + LE+SN + E MI + + + T +I + + I Sbjct: 489 GRGIINQNSLEESNVDMSTEFSNMILTQRGYQANTKVITTADSMLNTLI 537 >gi|293395583|ref|ZP_06639866.1| flagellar hook protein FlgE [Serratia odorifera DSM 4582] gi|291421902|gb|EFE95148.1| flagellar hook protein FlgE [Serratia odorifera DSM 4582] Length = 411 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ V F+++ + + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATAGFKSGSVSFADMFAGSQVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYP 122 + G+ ST LD A+ + +F ++ GI +R+G+FK+ ++ +LV+ G Sbjct: 60 ---NFNGGTTTSTNRALDVAITENGFFRMQDSDGGIFYSRNGQFKLDENRNLVNMQGLNL 116 Query: 123 VL-DMASVPIQIPQKDEIF 140 A P I Q + Sbjct: 117 TGYPAAGTPPTIQQGADPV 135 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTP----LE 187 F + + G + +Q+ +V+ + L + +G + ++ P Sbjct: 298 NNFQIEKDGTVVGIYSNQQKQVLGQIVLANFSNPEGLASKGDNVWQETGASGQPRVGTAG 357 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G LE SN + E+ MI + + S I + + + Sbjct: 358 GGGFGNLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLV 408 >gi|254503336|ref|ZP_05115487.1| Flagellar basal body protein FlaE [Labrenzia alexandrii DFL-11] gi|222439407|gb|EEE46086.1| Flagellar basal body protein FlaE [Labrenzia alexandrii DFL-11] Length = 421 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 12/144 (8%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A +L VADN++N+ T G++ + +F+ V A V + +Y Sbjct: 3 TGVSGMNAQSSKLGAVADNIANSSTTGYKRAETEFASQVLAQGGGSYNS-GGVQAHTKYA 61 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG----IILTRDGRFKVTDDGSLVSASGKYP 122 + GS T ++LD A++G+ +F + G LTR G F G LV+ +G Y Sbjct: 62 ISDQGSMSFTTSKLDLAVDGNGFFIVSDSTGAGASQALTRAGSFVPDGQGYLVNTAGMYL 121 Query: 123 VLDMASVPIQIPQKDEIFNVGEKG 146 PI +V G Sbjct: 122 ----QGYPIT---NGNAPSVVANG 138 Score = 69.7 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 60/206 (29%), Gaps = 34/206 (16%) Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTG--TELDFALEGDAWFALESPRGIILTRDG 104 + + + G TG T ++ + + ++ T G Sbjct: 234 PATGGFPYGAANIGTSTIQFDTTTG--QRTGAVTAVNITVPNGGTYDIDLENST-YTDAG 290 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKG--KVIATMG 159 F VT+ V A G P E GE G I G + I + Sbjct: 291 -FTVTN----VDADGN------------APSSVEKVEFGEDGTLYSIYTNGDRRPIYKIP 333 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L V + P+I P + G + G LE SN + E+ M Sbjct: 334 LADVPSPDKLDPVSGNIYRPSIDSGDVRVGFPGDGGLG-ELAVGALEGSNVDLANELTSM 392 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + + M E + Sbjct: 393 IESQRTYTANSQVFKAGSDLMQELVN 418 >gi|149202208|ref|ZP_01879181.1| flagellar hook protein FlgE [Roseovarius sp. TM1035] gi|149144306|gb|EDM32337.1| flagellar hook protein FlgE [Roseovarius sp. TM1035] Length = 419 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVAS 61 SF+ L+ A + +S ++N++N T+GF + +F+++ Q S Sbjct: 2 SFHTALSGLNAAQTDISVTSNNIANVGTLGFHGSRAEFADIYTTSPYSRPASQIGSGTEV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGII---LTRDGRFKVTDDGSLVSA 117 + + + GS +TG LD +L+G +F + + P TR G F + +G + +A Sbjct: 62 SRIGVDFKQGSLTATGNVLDLSLQGPGFFQVRTGPDAGADAGYTRAGAFGMNREGFVTNA 121 Query: 118 SGKY 121 +G + Sbjct: 122 AGHF 125 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/115 (10%), Positives = 37/115 (32%), Gaps = 12/115 (10%) Query: 136 KDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP------PT 184 +V + G + ++ + + + + QG ++ + Sbjct: 303 DLSSVDVRQDGTVWASYGAETSVAVGQVAVANFSDIQGLGSIGSATYRASRESGDVRLGV 362 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P G ++ G +E SN + ++ +I + + + ++ N + Sbjct: 363 PGTSGFGA-IRAGSVERSNVDLTEQLVNLIMAQRNYQASAKALETNGTLADTVLN 416 >gi|51246516|ref|YP_066400.1| flagellar hook protein (FlgE) [Desulfotalea psychrophila LSv54] gi|50877553|emb|CAG37393.1| related to flagellar hook protein (FlgE) [Desulfotalea psychrophila LSv54] Length = 566 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI---KNDIDQKISFV 59 ++ G++ Q ++ + +N++NT+T+ ++ + FS+++ + Q V Sbjct: 5 SALYTGVSGLNTNGQAMTVIGNNLANTNTIAYKGSRTMFSDLLSSSVTGSGGTSQVGRGV 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVSA 117 + G+F ST + LD A+EG+++F L +R G FK + G LV+ Sbjct: 65 GLSRVDNDFSQGTFESTSSGLDLAIEGNSFFLLSPSNDQSIHYSRAGSFKFNEGGYLVNP 124 Query: 118 SG 119 G Sbjct: 125 GG 126 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 9/114 (7%) Query: 135 QKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLED 188 N+ E G + K + IA + L G N+ + P Sbjct: 450 GNLSGVNIDEGGNVIAAYSNGKNRNIAAISLAKFQNPAGLTMEGNNLFAATGTSGAPRVG 509 Query: 189 LSGV---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L G V LE SN + E +MI + + + + + +I ++ + E I Sbjct: 510 LPGPELGKVFTNSLEQSNVDMSVEFVRMITIQRGYQANSKIITTVDELLGELIN 563 >gi|226327745|ref|ZP_03803263.1| hypothetical protein PROPEN_01618 [Proteus penneri ATCC 35198] gi|225203449|gb|EEG85803.1| hypothetical protein PROPEN_01618 [Proteus penneri ATCC 35198] Length = 160 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 7/151 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + + VA+N++N T GF+ V + D + Sbjct: 1 MDHVIYTAMGGARHSMENQAVVANNLANASTPGFKAQLSAMRAV--PVNGDTLPTRTLTV 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + + G+ TG +D AL + + A++ G TR+G + DG L+ G Sbjct: 59 ASTPGSDQSQGTMNYTGRSMDVALSDNGYLAVQLEDGTEAYTRNGNIQRNADGMLM-VQG 117 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQ 150 + + D + I++P + ++ G ++ Sbjct: 118 RLLMGDNGA--IEVPPQA-DVSIANNGIVTA 145 >gi|319405421|emb|CBI79040.1| Flagellar hook protein FlgE [Bartonella sp. AR 15-3] Length = 402 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 6/134 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLS VADN++N TVG++ V+FS V V Sbjct: 6 MMR---TGVSGMNAQGTRLSGVADNVANVGTVGYKRTNVQFSNYVTP-SGQYAYVPGGVK 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G +TG D + G +F + G LTR G F G L + +G Sbjct: 62 SHIGHDISISGPAHATGRSGDVMIHGSGFFRVADENGKEFLTRAGSFTRDKGGYLRNTAG 121 Query: 120 KYPVLDMASVPIQI 133 Y +L+ IQI Sbjct: 122 YY-LLNEDGERIQI 134 Score = 74.7 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 13/137 (9%) Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQG 168 LV+ G + + ++ D F G+ GEI +QK ++I +G+ +V + Sbjct: 265 LVTQKGNLFAFEAEADGMESGAFDG-FTFGKNGEIEVMYSNQKTRIIGYVGMTTVASPES 323 Query: 169 FVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 S N P + + G T+ G+LEDSN + E+ MI + + + Sbjct: 324 LTFLGGSVFETNSQTGAQMMGRPGDGVFG-TLSSGYLEDSNVDIGDELTDMIEAQRNYTA 382 Query: 223 ITTLIDENEKSMLEAIR 239 + + + M + Sbjct: 383 NSKVFQTGSELMDVIVN 399 >gi|116872071|ref|YP_848852.1| flagellar basal body rod protein FlgG [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740949|emb|CAK20069.1| flagellar basal-body rod protein, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 259 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 94/250 (37%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNSPVARQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFLTAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI--SQKGKVIATMG--LYS 162 G L ++ G VL IQ+ QK G++ + + + +G S Sbjct: 120 HSDQFGFLRTSDGA-NVLSATGEAIQVGQK-TSIRAEANGDLFNADTNQYLGRIGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 D + V+ + N T ++ G LE SN + EM Q++ + + Sbjct: 178 ADQADSLVKDGEGRLHVNGINTINLPAGQGNIQNGVLETSNVDLGIEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|3286760|emb|CAA05173.1| flagellar hook subunit protein [Campylobacter jejuni] Length = 862 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVRRLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 + Q V+ GS +T + D A+ GD +F + G+ LTRDG F Sbjct: 61 GQNPLQIGLGVSVSSTTRIHSQGSVQTTNSNTDVAINGDGFFMVSDDGGLTNYLTRDGAF 120 Query: 107 KVTDDGSLVSASG 119 K+ G+ V+ SG Sbjct: 121 KLDAYGNFVNNSG 133 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSGVT--VKRGFLEDSNANSMYE 209 +A + + SV + G + E +G +K LE SN + Sbjct: 770 VAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRA 829 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++I + + + + + I +++ + I+ Sbjct: 830 LTELIIIQRGYQANSKTISTSDQMLQTLIQ 859 >gi|163856435|ref|YP_001630733.1| hypothetical protein Bpet2124 [Bordetella petrii DSM 12804] gi|163260163|emb|CAP42465.1| flgE [Bordetella petrii] Length = 413 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 11/136 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K+S + Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYASSRVGLGVKVSAINQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEG-DAWFALESP-RGIILTRDGRFKVTDDGSLVSASGK- 120 VG+ TG E D A++G +F L P G+ +R+G F V D LV+A G Sbjct: 60 ---RFSVGNVTVTGGEYDIAIDGPKGFFRLTDPSGGVFYSRNGEFLVDKDFYLVNAQGYR 116 Query: 121 ---YPVLDMASVPIQI 133 Y + S P+ + Sbjct: 117 LTGYAAGAVGSAPVDL 132 Score = 73.5 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLED 188 ++ G + +I T+ L + + QG N+ + P + Sbjct: 302 LSINSDGTLQANYTNGETAIIGTLALANFNNVQGLQPVGNNAWAETGASGQPTLGQPGTN 361 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + +E SN + E+ MI + + + I ++ M + Sbjct: 362 GLATVVGQ-AVEASNVDMSKELVNMIVAQRTYQANAQTIKTQDEVMQVLMN 411 >gi|161777623|ref|YP_427619.2| flagellar hook protein FlgE [Rhodospirillum rubrum ATCC 11170] Length = 460 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S N+ ++A A +S +++N++N+ T+G++T F +V + + + V + Sbjct: 6 SSLNVAVSAMNAQSSSVSAISNNLANSSTIGYKTSNASFYSLVTGTGSTSNFTGAGVVAS 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSASG 119 G + T D A++G F + G TR G F DG LV+++ Sbjct: 66 ATQNVINQGVIVGTQNVTDLAVDGKGMFIVTDRSGSNELYYTRAGDFYPNADGDLVNSNN 125 Query: 120 KYPVL---DMASVPIQ 132 Y D VP+ Sbjct: 126 YYLQGYPTDRNGVPLT 141 >gi|270487672|ref|ZP_06204746.1| fagellar hook-basal body protein [Yersinia pestis KIM D27] gi|270336176|gb|EFA46953.1| fagellar hook-basal body protein [Yersinia pestis KIM D27] Length = 193 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 6/153 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ + A+N++N++T GFR + V Sbjct: 1 MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLE--KATATQVMGGGYSSRVAVL 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 S + S TG +LD AL+ A+ S TR+G+ V+ +G+L + +G Sbjct: 59 SQNAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREAYTRNGQMDVSAEGAL-TING- 116 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 PVL PI +P ++ + G I+ + Sbjct: 117 LPVLGDGG-PIVLPPY-SALSIADDGTIAIIPQ 147 >gi|307131609|ref|YP_003883625.1| flagellar hook protein flgE [Dickeya dadantii 3937] gi|306529138|gb|ADM99068.1| Flagellar hook protein flgE [Dickeya dadantii 3937] Length = 399 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ TVGF+ + F+++ + +++ V Sbjct: 2 SFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTRVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 GS ST LD A+ G+ ++ L + G ++ +R+G+F + ++V+A G Sbjct: 58 -LQDFSNGSITSTSRSLDVAINGNGFYRLLNSNGSVVYSRNGQFTLDSSRNIVNAQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIF 140 P I Q + Sbjct: 117 TGYPATGTPPAIQQGADPV 135 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 42/116 (36%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + +++ E G + + K +++ + L + +G + ++ + + Sbjct: 282 PGELTGYSISEDGSVVGSYSNNKTQLLGQIALANFANPEGLSPQGDNVWAATGNSGQAVV 341 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + E SN + E+ MI + + S I ++ + + Sbjct: 342 GSAGTGNLGKLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 397 >gi|261344142|ref|ZP_05971786.1| flagellar hook protein FlgE [Providencia rustigianii DSM 4541] gi|282567734|gb|EFB73269.1| flagellar hook protein FlgE [Providencia rustigianii DSM 4541] Length = 422 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L ++ +N++N+ T GF+ F+++ + ++ V Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + + G T D A+ G+ +F +E G + +RDG+F+ G+LV+ G Sbjct: 60 ---NFKDGPITRTDRATDVAISGNGFFRVEDQNGDVFYSRDGQFQRDKSGNLVNNQG 113 Score = 75.1 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F + + G + +Q+ +V+ + L + G V + + S N P++ + G Sbjct: 309 TTFKIEDNGLVVANYSNQQKRVVGQIALSAFANPNGLVSQGGNVWASSNASGNPMDGVPG 368 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + G LE SN + E+ MI + + + S I ++ + + Sbjct: 369 VGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVN 420 >gi|83747654|ref|ZP_00944690.1| FlgE [Ralstonia solanacearum UW551] gi|207728346|ref|YP_002256740.1| flagellar hook protein flge [Ralstonia solanacearum MolK2] gi|207739737|ref|YP_002258130.1| flagellar hook protein flge [Ralstonia solanacearum IPO1609] gi|83725706|gb|EAP72848.1| FlgE [Ralstonia solanacearum UW551] gi|206591592|emb|CAQ57204.1| flagellar hook protein flge [Ralstonia solanacearum MolK2] gi|206593119|emb|CAQ60025.1| flagellar hook protein flge [Ralstonia solanacearum IPO1609] Length = 401 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 F GL+ A + L + N++N +TVG++ +F + +VGA N I Q + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVS 116 + S G+ TG LD A+ G ++ + S + TR+G+F+ +G ++S Sbjct: 62 TKVSQ---SFTQGNVTVTGNPLDIAINGTGFYRMVDTSSGQVSYTRNGQFQTDKNGYIIS 118 Query: 117 ASGK 120 A+G+ Sbjct: 119 ATGQ 122 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 ++VG G I+ + + + + + G + + +P G+ Sbjct: 289 SYSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQWVETAESGSPQMGTPGM 348 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ +E SN + E+ MI + + + I ++ + + Sbjct: 349 GSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLV 398 >gi|268589982|ref|ZP_06124203.1| flagellar hook protein FlgE [Providencia rettgeri DSM 1131] gi|291314700|gb|EFE55153.1| flagellar hook protein FlgE [Providencia rettgeri DSM 1131] Length = 419 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 12/149 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L ++ +N++N+ T GF+ F+++ + ++ V Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + + G T D A+ G+ +F ++ G +RDG+F G+LV+ G Sbjct: 60 ---NFKDGPITRTDRATDVAISGNGFFRVQDQNGDTYYSRDGQFLRDKSGNLVNNQGMVV 116 Query: 120 -KYP--VLDMASVPIQIPQKDEIFNVGEK 145 YP V + +V IQ N+ Sbjct: 117 TGYPASVDEKGNVTIQSGGVPAGLNIPTD 145 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F + + G I+ +V+ + L + G V + + S N P++ + G Sbjct: 306 TTFKIEDNGLITANYSNQQKRVVGQVALSAFANPNGLVSQGGNVWASSNTSGNPMDGVPG 365 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + G LE SN + E+ MI + + + S I ++ + + Sbjct: 366 VGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVN 417 >gi|255591998|ref|XP_002535647.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] gi|223522413|gb|EEF26734.1| Flagellar basal-body rod protein flgG, putative [Ricinus communis] Length = 166 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 23/169 (13%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------------GAIKNDIDQKI 56 A + + T+A N++N +T G++ +V FS++V + + + Sbjct: 1 MQAQQLNVETIASNLANVNTAGYKRSRVSFSDLVALDPARRTAALAGSDAGLLAPVMRMG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLV 115 + V + G T +D ++G+ +F +++P G TR G + V DG+L Sbjct: 61 AGVGVAGISKLFDAGDIKKTDLPMDIIVQGEGFFEVQTPDGTPAYTRGGTWTVNRDGNLA 120 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 +++G I +P + V G + +V L + Sbjct: 121 TSAGL-----ALKPAIAVPDDVQALVVQPDGRVQA--RVAGQQSLADLG 162 >gi|68164546|gb|AAY87275.1| predicted flagellar hook protein [uncultured bacterium BAC17H8] Length = 1387 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 18/160 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVAS 61 SF L +S ++N++N T GF+ +V+F ++ ++N S Sbjct: 2 SFYTALTGLNGSSADISATSNNIANVGTTGFKRSRVEFGDIFATSPLQNASSSIGSGTIL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSLVSAS 118 G+ ++ LD A+ G +FAL+ + + TR+G V +D +V ++ Sbjct: 62 KGIKQQFTQGNIAASLNALDLAISGQGFFALKPSLTSAQTVYTRNGSLNVNNDRYVVDSA 121 Query: 119 GK----YPVLDMAS---------VPIQIPQKDEIFNVGEK 145 G+ YPV S VP+Q+P Sbjct: 122 GQFLLTYPVNTDGSVTAKDLDSAVPLQLPVTSGDPQATSN 161 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 + G I + + + + + G + N+ + TP +G Sbjct: 1275 IEIDSSGTIRANYTNGQNNPLGKIVVANFNNQNGLKQIGNATYTETAVSGTPQVGEAGSE 1334 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E+ +I + F + I+ I Sbjct: 1335 GFGNILSGSLERSNVDITEELVNLITAQRNFQASAKAIETTTGLTQTIIN 1384 >gi|78067837|ref|YP_370606.1| flagellar hook protein FlgE [Burkholderia sp. 383] gi|77968582|gb|ABB09962.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 413 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 60/138 (43%), Gaps = 2/138 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + GL+ L + +N++N +TVGF++ +F+++ + + Sbjct: 2 GYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFADMYANSVATSTNTQIGIGTSL 61 Query: 64 EYL--SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + + G+ +T + LD A+ G+ +F + + +RDG F+ +G +V + G+ Sbjct: 62 NAVQQNFGQGTINTTSSSLDVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGFIVDSQGRN 121 Query: 122 PVLDMASVPIQIPQKDEI 139 + A+ I + Sbjct: 122 LMGYAANAGGVINTAQTV 139 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 + +G G+++ V+ + L + + G V + P G Sbjct: 301 TTYTIGADGKLTGNYSNGQTAVLGEIALANFNNPNGLVNLGGNQYAESAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T ++ LE+SN + ++ +I + + + I +++ + I N+ Sbjct: 361 STNHGKLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQ-QAVDQTIINL 413 >gi|153951692|ref|YP_001399003.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. doylei 269.97] gi|152939138|gb|ABS43879.1| flagellar hook protein [Campylobacter jejuni subsp. doylei 269.97] Length = 875 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 71/206 (34%), Gaps = 22/206 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATTPTDGRG 60 Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 + Q V+ GS T D A+ GD +F + G+ LTR G F Sbjct: 61 GQNPLQIGLGVSVSSTTRIHSQGSVQITDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMS 166 K+ G+ V+ +G + V I + + + G I V + Sbjct: 121 KLDAYGNFVNNAG-FVVQGWN---INWDTQSIDSSRTPQNIFIDPGMHIPAAQSTEVAIK 176 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGV 192 NSG++ TPL L V Sbjct: 177 ANL----NSGLNIGTASTPLYSLDSV 198 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDL 189 E V +KG I GK +A M + SV + G + E Sbjct: 761 EGIRVDDKGNILGEFTNGKTFAVAKMAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAG 820 Query: 190 SGVT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 821 TGGRGEMKTAALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 872 >gi|27381969|ref|NP_773498.1| flagellar hook protein FlgE [Bradyrhizobium japonicum USDA 110] gi|27355139|dbj|BAC52123.1| flagellar hook protein [Bradyrhizobium japonicum USDA 110] Length = 410 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A +LSTV+DN++N +T G++ +FS ++ + + V + Y Sbjct: 9 TGVSGMSAQSNKLSTVSDNIANVNTTGYKRASTEFSSLILKSGSG-NYDSGAVETTVRYA 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSLVSASGKYPVL 124 + G T + D A++G+ +F + + LTR G F G+LV+A+G Y + Sbjct: 68 ISDAGHTQFTTSTTDLAVQGNGFFVVSNANNTQQYLTRAGSFVPDAQGNLVNAAGYYLLG 127 Query: 125 DMA 127 Sbjct: 128 QPG 130 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 P + +V + G ++ G+ + T+ L V + S N+ + Sbjct: 292 PAAIDKVDVDDAGHVTAILKNGQQMTLYTIMLADVPSPDNLTPEPGNVYSTNMNSGNAQA 351 Query: 189 LSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + T ++ G LEDSN + E+ MI + F + + + + Sbjct: 352 GNAGTGGLGTIQSGALEDSNVDLADELTGMIEAQRGFTANSKSFQTGADLLDVVVN 407 >gi|283955452|ref|ZP_06372950.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 414] gi|283793079|gb|EFC31850.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni 414] Length = 544 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 5/131 (3%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKIS 57 SF G++ + A+N++N +T GF+ +F ++ + + Q Sbjct: 1 MNSFYNGVSGVKTNSFGIDIYANNIANVNTTGFKYSDAQFKDIFYSTVTTQSTNPAQGGY 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 S + E GSF+++ +E D AL+G +F + TR+G FK +G LV Sbjct: 61 GSGSASSNVVFEQGSFVASDSEFDVALQGKGFFGVLGADNNAYYTRNGTFKRDANGYLVD 120 Query: 117 ASGKYPVLDMA 127 + G + + M Sbjct: 121 SYGNFVLGTMN 131 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 + +N+ + G I K ++ + LY+ QG ++ + Sbjct: 428 KQYNISDDGSIIAQFSNGKNAIVGKLALYNFINEQGLAAMGDNIFAATANSGNASFIMKN 487 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ K GFLE SN + E+ +I + F++ + I +++ + +AI Sbjct: 488 GQIVNTAKFKGGFLEQSNVDLSVELSNLIVTQKAFDASSKSITTSDQMIQKAIN 541 >gi|167567750|ref|ZP_02360666.1| flagellar hook protein flgE [Burkholderia oklahomensis EO147] Length = 395 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 13/156 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L+T++ N++NT T GF++ + F+ +V + + S + Sbjct: 2 SFNIALSGINAVNNQLNTISHNIANTGTYGFKSGRANFATMVAGAQPNGTYIGSITQNVG 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 GS + TG LD A++ D +F + G + TR G F+ DG +V G+ Sbjct: 62 IG-----GSIMKTGRGLDAAIQQDGFFVTKDADGSLLYTRVGIFQRAADGYMVDGFGRRV 116 Query: 123 -------VLDMASVPIQIPQKDEIFNVGEKGEISQK 151 VL VP + ++ G +S Sbjct: 117 QGYAANGVLGDLQVPNTVEPAKASDSIEYAGNLSAD 152 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 22/152 (14%) Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGK--V 154 T G +V D S + + P ++ EKG + G+ Sbjct: 256 YT--GVMQVGGDSSTTTNNQNGYAAGTPGEP----------SIDEKGNVVVQYSNGQKRT 303 Query: 155 IATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYE 209 + T+ L + + G ++ + PL G + LE SNA+ E Sbjct: 304 VGTVALAAFASADGLTAVGDTAWKASTASGNPLYGTPGSGMFSKLATASLEMSNADVTRE 363 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + M+ + + + + +I + M ++ + Sbjct: 364 LVDMMSAQRNYQANSKVIATENQMMQSLMQAL 395 >gi|300024588|ref|YP_003757199.1| flagellar hook-basal body protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526409|gb|ADJ24878.1| flagellar hook-basal body protein [Hyphomicrobium denitrificans ATCC 51888] Length = 417 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 17/192 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 ++ R+ TVADN++N +T G++ +F+ +V A + V++ Sbjct: 7 MTTSISGMAVQSDRMGTVADNIANVNTTGYKEASAEFATLV-AEGHVASYVPGSVSTIAR 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKYPV 123 G T + D A+ G+ +F ++SP G TR G F ++ +G LV+A+G + Sbjct: 66 RAVTHQGDLSYTNSPTDLAVSGNGFFMVQSPSGTPYLTRAGSF-ISTNGELVNAAGFTLL 124 Query: 124 ---LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 L I + VG A +GL + + G + + Sbjct: 125 GYDLLNGGSSSVINSAAGLVPVG-----------TANLGLKATPSTSGNFQVNLPSDAAV 173 Query: 181 IPPTPLEDLSGV 192 P + +G Sbjct: 174 STSLPSANAAGA 185 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 20/161 (12%) Query: 90 FALESPRGIILTRDGRFKVTDDGSLVSASGKY-PVLDMASVPIQIPQKDEIFNVGEKGEI 148 ++ P G L F + + L +G Y PV A+ P + + +G + Sbjct: 263 LSVNVPNGATL----NFNMGNTTQL---AGAYIPVDASANG--NGPSAVDRLEISAQGIV 313 Query: 149 SQ---KGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-----VTVKRGF 198 + G + + L +V + + N L+ + + G Sbjct: 314 TAVYADGSRVDAFKIPLANVASPDNLTAISGNVFATNKESGDLQLGTANSGSLGKIVSGA 373 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE S+ + E+ M+ + + + + + + + + Sbjct: 374 LEKSSVDLASELTTMVEAQRSYTANSKVFQTGTELLDVLVN 414 >gi|299068732|emb|CBJ39971.1| flagellar hook protein FlgE [Ralstonia solanacearum CMR15] Length = 401 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 F GL+ A + L + N++N +TVG++ +F + +VGA N I Q + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVS 116 + S G+ TG LD A+ G ++ + S + TR+G+F+ +G ++S Sbjct: 62 TKVSQ---SFTQGNVTVTGNPLDIAINGTGFYRMVDASSGQVSYTRNGQFQTDKNGYIIS 118 Query: 117 ASGK 120 A+G+ Sbjct: 119 ATGQ 122 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 ++VG G I+ + + + + + G + + +P G+ Sbjct: 289 SYSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQWVETAESGSPQMGTPGM 348 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ +E SN + E+ MI + + + I + + + Sbjct: 349 GSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLV 398 >gi|254248705|ref|ZP_04942025.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] gi|124875206|gb|EAY65196.1| Flagellar hook protein FlgE [Burkholderia cenocepacia PC184] Length = 414 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 4/165 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF+ + F+++ ++ ++ +I Sbjct: 2 GYQQGLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+ ST + LD A+ G+ +F + S +RDG F +G++V A G+ Sbjct: 62 ASVQQNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRN 121 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKG--KVIATMGLYSVD 164 + A I + I+ + ++ L + D Sbjct: 122 LMGYAAGAGGVINTAQTVPLQAPTSNIAPRATSRITGQFNLNAQD 166 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ V+ + L + + G V + P G Sbjct: 301 TTFSIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYAETAASGVPQVSAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T ++ LE+SN N E+ +I + + + I +++ +A+ N+ Sbjct: 361 STNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQ-QAVDQALLNL 413 >gi|168703389|ref|ZP_02735666.1| hypothetical protein GobsU_27906 [Gemmata obscuriglobus UQM 2246] Length = 430 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 12/134 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN----------- 50 + +G + L + +N++N +T G++ ++ F +VV + Sbjct: 3 LNALFVGSSGLTTNSSALDVIGNNLANINTTGYKDQRMVFRDVVYQTLSSGTSADAGTGG 62 Query: 51 -DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 + Q V G G+ TG LD L+G +F + + + TR G F V Sbjct: 63 VNPTQVGFGVGVGSIGTQFTQGNLNPTGRSLDVGLQGRGFFVMRNVEDVAYTRAGAFGVD 122 Query: 110 DDGSLVSASGKYPV 123 G LV + V Sbjct: 123 SAGYLVDPGTGFRV 136 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 ++ G + G+ I A + + + G +R N+ ++ Sbjct: 316 TDVSIDADGIVQGKFTNGRTINLAQLAVAGFNNEDGLLRSGNNYFRSSVASGEALIGLAG 375 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E ++I + F I ++ E Sbjct: 376 QGGRGSLMGGALESSNVDIAIEFSRLIVAQRGFQVNARTISSTNDTLQELAN 427 >gi|157373207|ref|YP_001471807.1| flagellar hook protein FlgE [Shewanella sediminis HAW-EB3] gi|157315581|gb|ABV34679.1| flagellar basal body FlaE [Shewanella sediminis HAW-EB3] Length = 398 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N+ TVG+R + +FS V N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGYRGGRSEFSAVY----NGGQAGGVNVMSTS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK-- 120 + S GS + TG ELD ++GD +F L G + +R G F DG + +G Sbjct: 58 QNFSMG-GSLVYTGRELDMGIQGDGFFVLSGQDGSTLYSRAGMFSQDADGYITDPAGNRL 116 Query: 121 --YPVLDMA 127 YPV Sbjct: 117 QGYPVGAGG 125 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 7/95 (7%) Query: 153 KVIATMGLYSVDMSQGFV------RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 ++ + L + G + I P G +V G+LE SN ++ Sbjct: 305 QIQGQVVLADFNNPNGLTPVSNNAWAATNAAGQPIVGAPTTGTLG-SVSGGYLEGSNVDT 363 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ + + S ++D N + I Sbjct: 364 TAEMVSLMTAQRNYQSNAKVLDANSTMQQALLNAI 398 >gi|312884834|ref|ZP_07744526.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] gi|309367486|gb|EFP95046.1| flagellar hook protein FlgE [Vibrio caribbenthicus ATCC BAA-2122] Length = 398 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS V N + VAS Sbjct: 2 SFNIALSGLDATNTDLNTISHNIANASTTGFKGARTEFSAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + K GS TG +D A+ G +F + G TR G F D LVS +G Sbjct: 58 QNFDKN-GSISGTGRPMDLAINGTGFFVTKDSTGQTQYTRAGVFNRDKDNFLVSNTGAKL 116 Query: 120 -KYPVLDMAS 128 Y V + Sbjct: 117 QGYSVDGNNN 126 Score = 63.1 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 5/94 (5%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVT----VKRGFLEDSNANSM 207 ++ + L QG V+ + + + P+ + G + G LE SN + Sbjct: 305 QLQGQVVLADFANPQGLVKVNGTAWTQSFSSGAPIVGVPGTGTLGDLSPGALEGSNVDLT 364 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I N+K + Sbjct: 365 SELVNLMTAQRNYQANAKTISTNDKLTQALFNAV 398 >gi|308273521|emb|CBX30123.1| hypothetical protein N47_D29320 [uncultured Desulfobacterium sp.] Length = 469 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 7/123 (5%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVASGKEY 65 ++ AL ++ + DN++N +TVGF+ +V F +V+ A Q + Sbjct: 1 MSGLNALGNAMTVIGDNIANVNTVGFKESRVTFQDVLSQTVATTAGSAQVGRGTSLADIS 60 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASGKYP 122 S GSF ST + D A+ G +F + P TR G F+ DG+ V+ S Y Sbjct: 61 SSFSQGSFESTDSSTDLAIGGAGFFMVRDPGTSNNDYYTRAGEFRFDKDGNFVNPS-DYI 119 Query: 123 VLD 125 V Sbjct: 120 VQG 122 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 10/115 (8%) Query: 135 QKDEIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPN-IPPTPLED 188 + +V G I+ G+V+ + L QG + + S + P+ Sbjct: 352 GDLQAISVATDGVITGQYSNGQVLPLYRVALAKFQNEQGLYKVGGNLFSQTRLSGEPITG 411 Query: 189 LSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ LE SN + E +MI + + + + +I ++ + E I Sbjct: 412 KPGGNGLGSLSPNSLEQSNVDLATEFVRMITTQRGYQANSKIITTIDQMLSELIN 466 >gi|22127327|ref|NP_670750.1| flagellar hook protein FlgE [Yersinia pestis KIM 10] gi|45442796|ref|NP_994335.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|108809055|ref|YP_652971.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|108810748|ref|YP_646515.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|145597817|ref|YP_001161893.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|150260249|ref|ZP_01916977.1| lateral flagellar hook protein [Yersinia pestis CA88-4125] gi|162421081|ref|YP_001604847.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165924960|ref|ZP_02220792.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939066|ref|ZP_02227618.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008888|ref|ZP_02229786.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211930|ref|ZP_02237965.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399572|ref|ZP_02305096.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419268|ref|ZP_02311021.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425161|ref|ZP_02316914.1| flagellar hook protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466340|ref|ZP_02331044.1| flagellar hook protein [Yersinia pestis FV-1] gi|218927912|ref|YP_002345787.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|229837408|ref|ZP_04457571.1| Flagellar hook protein flgE [Yersinia pestis Pestoides A] gi|229840621|ref|ZP_04460780.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842828|ref|ZP_04462980.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. India 195] gi|229900945|ref|ZP_04516069.1| Flagellar hook protein flgE [Yersinia pestis Nepal516] gi|270487673|ref|ZP_06204747.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294502788|ref|YP_003566850.1| flagellar hook protein [Yersinia pestis Z176003] gi|21960408|gb|AAM87001.1|AE013948_9 putative flagellar hook protein [Yersinia pestis KIM 10] gi|45437662|gb|AAS63212.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|108774396|gb|ABG16915.1| flagellar hook protein [Yersinia pestis Nepal516] gi|108780968|gb|ABG15026.1| putative flagellar hook protein [Yersinia pestis Antiqua] gi|115346523|emb|CAL19399.1| putative flagellar hook protein [Yersinia pestis CO92] gi|145209513|gb|ABP38920.1| flagellar hook protein [Yersinia pestis Pestoides F] gi|149289657|gb|EDM39734.1| lateral flagellar hook protein [Yersinia pestis CA88-4125] gi|162353896|gb|ABX87844.1| flagellar hook protein [Yersinia pestis Angola] gi|165913022|gb|EDR31647.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923160|gb|EDR40311.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992227|gb|EDR44528.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206676|gb|EDR51156.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963262|gb|EDR59283.1| flagellar hook protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052076|gb|EDR63484.1| flagellar hook protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055924|gb|EDR65705.1| flagellar hook protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682284|gb|EEO78376.1| Flagellar hook protein flgE [Yersinia pestis Nepal516] gi|229690095|gb|EEO82152.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. India 195] gi|229696987|gb|EEO87034.1| Flagellar hook protein flgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705531|gb|EEO91541.1| Flagellar hook protein flgE [Yersinia pestis Pestoides A] gi|262360820|gb|ACY57541.1| flagellar hook protein [Yersinia pestis D106004] gi|270336177|gb|EFA46954.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294353247|gb|ADE63588.1| flagellar hook protein [Yersinia pestis Z176003] gi|320016711|gb|ADW00283.1| Flagellar hook protein flgE [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 413 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A A ++L+T+++N++N+ T GF+ + +FS + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQ-----SQPLGVAVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + G TG LD A+ G +F + G TR G F+ DG LV+ G Sbjct: 57 SQNISKDGQKEKTGMGLDLAISGGGFFVVRESSGDKAYTRAGMFRSDVDGYLVNGQGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 YP ++ I +I N G + S++ +A + Sbjct: 117 QGYPADAAGNIQAGIISDLKINNAGVPAKASEQLDFMANLN 157 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 12/105 (11%) Query: 141 NVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRR------ENSGISPNIPPTPLEDL 189 + G + G+ + + L + G V + E++ + TP L Sbjct: 303 RIESDGSVYATFSNGERVLQGKVVLANFASPSGLVTQNGTSWSESNKSGAALLGTPGTGL 362 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G +++ G LE+SN + E+ ++ + + + T +I N+ M Sbjct: 363 LG-SLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMM 406 >gi|330953727|gb|EGH53987.1| flagellar basal body rod protein FlgG [Pseudomonas syringae Cit 7] Length = 148 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 19/154 (12%) Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------GK 153 +RDG F + +G +V+A+G I +PQ + F VG+ G +S + Sbjct: 1 SRDGTFHLDANGQIVTANGY-----ALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQ 55 Query: 154 VIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 +I + G + E TP + G T+ + LE+SN +++ Sbjct: 56 IIGNIQTADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTL-QNTLENSNVSTV 114 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ MI + + + +I ++ + +N+ Sbjct: 115 EELVNMITTQRAYEMNSKVISTADQMLQNLTQNL 148 >gi|300696913|ref|YP_003747574.1| flagellar hook protein FlgE [Ralstonia solanacearum CFBP2957] gi|299073637|emb|CBJ53157.1| flagellar hook protein FlgE [Ralstonia solanacearum CFBP2957] Length = 401 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 F GL+ A + L + N++N +TVG++ +F + +VGA N I Q + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVS 116 + S G+ TG LD A+ G ++ + S + TR+G+F+ +G ++S Sbjct: 62 TKVSQ---SFTQGNVTVTGNPLDIAINGTGFYRMVDASSGQVSYTRNGQFQTDKNGYIIS 118 Query: 117 ASGK 120 A+G+ Sbjct: 119 ATGQ 122 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 ++VG G I+ + + + + + G + + +P G+ Sbjct: 289 SYSVGNDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQWVETAESGSPQMGTPGM 348 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ +E SN + E+ MI + + + I ++ + + Sbjct: 349 GSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLV 398 >gi|206562843|ref|YP_002233606.1| flagellar hook protein FlgE [Burkholderia cenocepacia J2315] gi|198038883|emb|CAR54845.1| flagellar hook protein 2 FlgE2 [Burkholderia cenocepacia J2315] Length = 414 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 69/165 (41%), Gaps = 4/165 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF+ + F+++ ++ ++ +I Sbjct: 2 GYQQGLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+ ST + LD A+ G+ +F + S +RDG F +G++V A G+ Sbjct: 62 ASVQQNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRN 121 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKG--KVIATMGLYSVD 164 + A I + I+ + K+ L + D Sbjct: 122 LMGYAAGAGGVINTAQTVPLQAPTNNIAPRATSKITGQFNLNAQD 166 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN----IPPTPLED 188 F++G G+++ V+ + L + + G V + + +P Sbjct: 301 TTFSIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYAETAASGVPQIAAPG 360 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G LE+SN N E+ +I + + + I + + Sbjct: 361 STNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLN 412 >gi|37525841|ref|NP_929185.1| flagellar hook protein FlgE [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785270|emb|CAE14211.1| Flagellar hook protein FlgE [Photorhabdus luminescens subsp. laumondii TTO1] Length = 404 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 21/149 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N T GF++ V FS++ + + K+S V Sbjct: 2 AFSQAVSGLNAAAGNLDVIGNNIANAATYGFKSSTVAFSDIFAGSQVGLGVKVSGVNQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG--- 119 + + G+ +T LD A+ +F ++ GI +R+G+FK+ ++ ++++ G Sbjct: 60 ---NFKDGTPTTTNRTLDLAITQGGFFRMQGGDGGIYYSRNGQFKMDENRNIINMQGMKL 116 Query: 120 -KYPVLDMASV-----------PIQIPQK 136 YP + PI IPQ Sbjct: 117 TGYPAASVNGGAPEIQKGANPEPITIPQG 145 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 + + + G + +++ +++ + L + +G + ++ + + P+ ++ Sbjct: 293 YRIEQDGRVIGTYTNEQSQLLGQIVLTNFANPEGLAAKGDNVWVETSASGNPVVGIADSG 352 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G LE SN + E+ MI + + S I ++ + + Sbjct: 353 GFGKLLSGSLEASNVDMSQELVNMIVAQRNYQSSAQTIKTQDQILQTLV 401 >gi|167574701|ref|ZP_02367575.1| flagellar hook protein flgE [Burkholderia oklahomensis C6786] Length = 395 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 13/156 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L+T++ N++NT T GF++ + F+ +V + + S + Sbjct: 2 SFNIALSGINAVNNQLNTISHNIANTGTYGFKSGRANFATMVAGAQPNGTYIGSITQNVG 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYP 122 GS + TG LD A++ D +F + G + TR G F+ DG +V G+ Sbjct: 62 IG-----GSIMKTGRGLDAAIQQDGFFVTKDADGSLLYTRVGIFQRAADGYMVDGFGRRV 116 Query: 123 -------VLDMASVPIQIPQKDEIFNVGEKGEISQK 151 VL VP + ++ G +S Sbjct: 117 QGYAANGVLGDLQVPNTVEPAKASDSIEYAGNLSAD 152 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 22/152 (14%) Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGK--V 154 T G +V D + + + P ++ EKG + G+ Sbjct: 256 YT--GVMQVGGDSTTTTNNQNGYAAGTPGEP----------SIDEKGNVVVQYSNGQKRT 303 Query: 155 IATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYE 209 + T+ L + + G ++ + PL G + LE SNA+ E Sbjct: 304 VGTVALAAFASADGLTAVGDTAWKASTASGNPLYGTPGSGMFSKLATASLEMSNADVTRE 363 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + M+ + + + + +I + M ++ + Sbjct: 364 LVDMMSAQRNYQANSKVIATENQMMQSLMQAL 395 >gi|225620340|ref|YP_002721597.1| flagellar hook protein FlgE [Brachyspira hyodysenteriae WA1] gi|225215159|gb|ACN83893.1| flagellar hook protein FlgE [Brachyspira hyodysenteriae WA1] Length = 423 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI------------DQKISFVASGKEYL 66 + V +N++N +T GF+ +V F +++ + Q + Sbjct: 1 MDVVGNNIANVNTYGFKRGRVTFKDMISQSLSGAAKPQEDRGGINPQQVGLGMMVATIDT 60 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G+ TG D A++G+ +F + TR+G F + DG LV+ S Y V Sbjct: 61 IHTQGALQVTGVNTDLAIQGEGFFIEKRGNNSYYTRNGAFSLDKDGYLVNPSNGYKVQGW 120 Query: 127 ASV 129 +V Sbjct: 121 NAV 123 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN------SGISPNIPPTPL 186 E F+ + G+I+ K + + L + + G + + + T Sbjct: 309 EGFSFDDSGQITGVFTNGNRKTLGQVALAKFNNAGGLEKAGDTLFVQSNNSGAANIGTAA 368 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G ++K G LE SN + + MI + F S I ++ + E I Sbjct: 369 AEGRG-SIKAGTLEMSNVDLSEQFTDMIVTQRGFQSNARTITTADQMLQEVI 419 >gi|17548566|ref|NP_521906.1| flagellar hook protein FlgE [Ralstonia solanacearum GMI1000] gi|17430814|emb|CAD17496.1| probable flagellar hook protein flge [Ralstonia solanacearum GMI1000] Length = 401 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 F GL+ A + L + N++N +TVG++ +F + +VGA N I Q + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVS 116 + S G+ TG LD A+ G ++ + S + TR+G+F+ +G ++S Sbjct: 62 TKVSQ---SFTQGNVTVTGNPLDIAINGTGFYRMVDASSGQVSYTRNGQFQTDKNGYIIS 118 Query: 117 ASGK 120 A+G+ Sbjct: 119 ATGQ 122 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 ++VG G I+ + + + + + G + + P G+ Sbjct: 289 SYSVGTDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQWVETAESGAPQMGTPGM 348 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ +E SN + E+ MI + + + I + + + Sbjct: 349 GSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDTILQTLV 398 >gi|170735956|ref|YP_001777216.1| flagellar basal body FlaE domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818144|gb|ACA92726.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 414 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 2/138 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF+ + F+++ ++ ++ +I Sbjct: 2 GYQQGLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+ ST + LD A+ G+ +F + S +RDG F +G++V A G+ Sbjct: 62 ASVQQNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRN 121 Query: 122 PVLDMASVPIQIPQKDEI 139 + A I + Sbjct: 122 LMGYAAGAGGVINTAQTV 139 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ V+ + L + + G V + P G Sbjct: 301 TTFSIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYAETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN N E+ +I + + + I + + Sbjct: 361 STNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLN 412 >gi|300693338|ref|YP_003749311.1| flagellar hook protein flge [Ralstonia solanacearum PSI07] gi|299075375|emb|CBJ34670.1| flagellar hook protein FlgE [Ralstonia solanacearum PSI07] Length = 401 Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 F GL+ A + L + N++N +TVG++ +F + +VGA N I Q + Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQIGQGVDV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVS 116 + S G+ TG LD A+ G ++ + S + TR+G+F+ +G ++S Sbjct: 62 TKVSQ---SFTQGNVTVTGNPLDIAINGTGFYRMVDASSGQVSYTRNGQFQTDKNGYIIS 118 Query: 117 ASGK 120 A+G+ Sbjct: 119 ATGQ 122 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 ++VG G I+ + + + + + G + + +P G+ Sbjct: 289 SYSVGTDGTITGRYSNGRTSTLGQIAMTNFKAPDGLQNIGGNQWVETAESGSPQMGTPGM 348 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ +E SN + E+ MI + + + I ++ + + Sbjct: 349 GSFGLLQSSAVEQSNVDLSAELVNMIVAQRSYQANAQTIKTEDQLLQTLV 398 >gi|78219159|gb|ABB38508.1| flagellar hook protein FlgE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 527 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 13/144 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFVASGKEYLSKEVGSFIS 75 ++ + +N++N +TVGF+ ++ F + + + Q V G Y GSF + Sbjct: 1 MNVLGNNIANVNTVGFKGARMDFEDFISQDVNTASGTRQVGRGVGIGTIYGDFSQGSFET 60 Query: 76 TGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 T D A+ G +FA+ SP+G TR G F+ +G LV G Y + Q Sbjct: 61 TTEATDLAIGGRGFFAV-SPKGEETAYYTRAGNFRFDKEGYLVDPHG-YVLQGW-----Q 113 Query: 133 IPQKDEIFNVGEKGEISQKGKVIA 156 I G +S K+ Sbjct: 114 IETPRPSLATSTAGSVSSTSKIKG 137 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPN-----IPPTPLE 187 + V G + G V+ + LY R + S + P P Sbjct: 413 QNVTVTRDGILQGRYSNGAVLDLYQITLYDFQSKDNLRREGGNLFSESNASGLAAPGPAN 472 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 TV LE SN + E MI + F S + +I + +MLE + + Sbjct: 473 ANGYGTVNSNSLEQSNVDLAKEFVNMITTQRGFQSNSKVITTTD-TMLEVVIQM 525 >gi|200390428|ref|ZP_03217039.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602873|gb|EDZ01419.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 403 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIPNT 142 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 286 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 345 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 346 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 401 >gi|283852232|ref|ZP_06369505.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] gi|283572458|gb|EFC20445.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B] Length = 518 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 11/174 (6%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKIS 57 T+ G++ L+ Q ++ ++N++NT+TVG+++ ++ F++++ G+ + Q Sbjct: 1 MTAIWTGVSGMLSYSQGIANTSNNLANTNTVGYKSSRMLFADMISELAGSTTDTNSQIGM 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESP--RGIILTRDGRFKVTDDGSL 114 V G +S VG+ + +D A++G+ +F ++ P TR G F DG L Sbjct: 61 GVQVGTVSMSTGVGAIATGDQSMDMAIDGEHGYFTVKDPVSDKTYYTRAGDFNFNTDGYL 120 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 VS +G V A + Q + +V E+ G + + + Sbjct: 121 VSPTGN-RVQGWAVDQAAVTQAERTGSVLP--EVPVTGDPTD-IRITDFTLPAQ 170 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 10/108 (9%) Query: 141 NVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVTV 194 +V E G +S G+ + + L R N+ +S + + Sbjct: 407 SVDENGVVSGTFSNGQTKDLYVLALADFRNPTDLRREGNNLLSATTESGAATTGRANSGI 466 Query: 195 K---RGF-LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+ LE SN + EM +I L + F S + ++ + M +A+ Sbjct: 467 YDGISGYSLESSNVDMATEMVNLITLQRAFQSNSKVVTTADTMMEKAL 514 >gi|83591885|ref|YP_425637.1| hypothetical protein Rru_A0546 [Rhodospirillum rubrum ATCC 11170] gi|83574799|gb|ABC21350.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 661 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ A L +ADN++N +TVG++ KV F +V + V S Sbjct: 6 ALFSGVSGLQAQSSALGAIADNVTNVNTVGYKGTKVNFQTLVTQQVSLTAYSPGGVQSKP 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 G +T + D + G +F + P G +R G FKV DG L+++ G Sbjct: 66 RTGVDVQGLLQATTSSTDIGISGQGFFVVSGQAIDPTGYAYSRAGSFKVDKDGYLMNSGG 125 Query: 120 KYPVLDMASVPI-QIPQKDEIFNVGEKGEIS 149 Y M P+ V + G + Sbjct: 126 YY----MQGWPLDNWDGTAAASTVTKNGNVY 152 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 12/116 (10%) Query: 135 QKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGF------VRRENSGISPNIPP 183 ++GE G ++ I + + + G V +E Sbjct: 544 GNYSGVSIGEDGVVTALFDNGVTTPIFMIPIATFVNPNGMNSLSGNVFQETDNSGLPTVR 603 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +G TV + LE S + E MI + +++ +I + + E IR Sbjct: 604 AAGEASAG-TVNQATLEASTVDLGSEFTNMITTQRAYSAAAKIITTADDMLDELIR 658 >gi|153948570|ref|YP_001399634.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|152960065|gb|ABS47526.1| flagellar hook protein flgE [Yersinia pseudotuberculosis IP 31758] Length = 402 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 10/160 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A A ++L+T+++N++N+ T GF+ + +F+ + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFASMYAQ-----SQPLGVTVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + G TG LD A+ G +F + G TR G F+ DG LV+ G Sbjct: 57 SQNIGKDGQKDKTGMGLDLAISGGGFFVVRENSGDKAYTRAGMFRSDVDGYLVNGQGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 YP D ++ I +I N G + S +A + Sbjct: 117 QGYPADDAGNIQAGIISDLKINNAGVPAKASTNLDFMANL 156 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 12/105 (11%) Query: 141 NVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRR------ENSGISPNIPPTPLEDL 189 + G + G+ + + L + G V + E++ + TP L Sbjct: 292 RIESDGSVYATFSNGERMLQGKVVLANFASPSGLVTQNGTSWSESNKSGAALLGTPGTGL 351 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G +++ G LE+SN + E+ ++ + + + T +I N+ M Sbjct: 352 LG-SLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMM 395 >gi|220905353|ref|YP_002480665.1| hypothetical protein Ddes_2091 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869652|gb|ACL49987.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 499 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 M +S IG L + ++ +N++N T+G++ + FS++ A + Sbjct: 1 MNSSLYIGATGMKGLAEGMNVTTNNLANVSTIGYKQQGILFSDIFYAEQGGMGNWWNAQD 60 Query: 52 -----IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRF 106 + Q + G+ S+ T D A+ G +F + + TR G F Sbjct: 61 NSRVALGQVGMGLQVESVRTLFGQGALESSNTVTDMAISGKGFFQVTDGVDLYYTRAGDF 120 Query: 107 KVTDDGSLVSASG 119 + +G L + SG Sbjct: 121 RPDREGVLRTPSG 133 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 10/134 (7%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGF 169 + G PV + ++ G++ + + + + G Sbjct: 362 TNYKGSSPVTRRNNQNGYPEGFLSNISISANGDVVGLFSNNQSMDLWQIPVCRFTSEDGL 421 Query: 170 VRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 R ++ S ++ T ++ +E+SN + EM MI + F S + Sbjct: 422 RREGHNMFSATADAGQMDMGEAGTENYGTIRAYNIENSNVDVATEMANMIITQRGFQSNS 481 Query: 225 TLIDENEKSMLEAI 238 ++ ++ + +A+ Sbjct: 482 KVVTTADQMLQKAV 495 >gi|47091645|ref|ZP_00229441.1| flagellar basal-body rod protein, putative [Listeria monocytogenes str. 4b H7858] gi|254824038|ref|ZP_05229039.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J1-194] gi|254932038|ref|ZP_05265397.1| flagellar basal body rod protein FlgG [Listeria monocytogenes HPB2262] gi|47019964|gb|EAL10701.1| flagellar basal-body rod protein, putative [Listeria monocytogenes str. 4b H7858] gi|293583591|gb|EFF95623.1| flagellar basal body rod protein FlgG [Listeria monocytogenes HPB2262] gi|293593267|gb|EFG01028.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J1-194] gi|328467251|gb|EGF38331.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 1816] gi|328475645|gb|EGF46394.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 220] gi|332311107|gb|EGJ24202.1| Flagellar basal body rod protein [Listeria monocytogenes str. Scott A] Length = 259 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVARQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK G++ + G+ + +G S Sbjct: 120 HSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEANGDLYNAETGQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ + N T ++ G +E SN + EM Q++ + + Sbjct: 178 ANQADSLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|217965220|ref|YP_002350898.1| flagellar basal body rod protein [Listeria monocytogenes HCC23] gi|290893977|ref|ZP_06556952.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J2-071] gi|217334490|gb|ACK40284.1| flagellar basal body rod protein [Listeria monocytogenes HCC23] gi|290556423|gb|EFD89962.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J2-071] gi|307570221|emb|CAR83400.1| flagellar basal-body rod protein, putative [Listeria monocytogenes L99] Length = 259 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVTRQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK G++ + G+ + +G S Sbjct: 120 HSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEANGDLYNAETGQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ + N T ++ G +E SN + EM Q++ + + Sbjct: 178 ANQADSLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|269836573|ref|YP_003318801.1| hypothetical protein Sthe_0541 [Sphaerobacter thermophilus DSM 20745] gi|269785836|gb|ACZ37979.1| protein of unknown function DUF1078 domain protein [Sphaerobacter thermophilus DSM 20745] Length = 413 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------------GA 47 S ++ A + L + +N++N T GF+ +V+F +V+ G Sbjct: 3 NRSMASAVSGLKAYQTWLDVIGNNIANLATPGFKASRVRFEDVMSHTLRGASVPDPAQGR 62 Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 + Q V + G+ +TG A++G+ +F + TRDG F Sbjct: 63 GGRNPAQVGLGVLAAGIDTDYAPGTPTATGKMSHMAIQGEGYFVVADGFRTYYTRDGSFD 122 Query: 108 VTDDGSLVSASGKYPVLD---MASVPIQIPQKDEIFNV 142 + DG LV+ S V+ A+ I Q + Sbjct: 123 LGIDGRLVNPSTGLYVMGWQADANGAIDTSQPLSPIRI 160 Score = 84.3 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 70/204 (34%), Gaps = 26/204 (12%) Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALE-GDAWFALESPRGIILTRDGRF 106 + + ++ + + G+ ++ + D ++ G+ P G TR + Sbjct: 221 TYSSSEAGVTLTNATGTVEFDDQGNVLNVTSAGDLTIQWGNGAADTVIPGGGDFTRLTQL 280 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLY 161 A+G V F + G ++ K + + L Sbjct: 281 ----------AAGSDAVGVADGWT---AGALTSFAISVDGVVTGIYSNGATKALGQIALA 327 Query: 162 SVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G ++ + +SP + TP+ G + G+LE SN + E MI Sbjct: 328 TFANPGGLLKEGQNLLSPSPNSGQAVIGTPVTGGRG-QIAAGYLEMSNVDLAEEFTNMIL 386 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + F + + ++ +++ + + + Sbjct: 387 AERGFQANSRVVTTSDEVLQDLVN 410 >gi|16799765|ref|NP_470033.1| flagellar basal body rod protein FlgG [Listeria innocua Clip11262] gi|16413142|emb|CAC95922.1| lin0690 [Listeria innocua Clip11262] gi|313620081|gb|EFR91589.1| flagellar basal body rod protein FlgG [Listeria innocua FSL S4-378] Length = 259 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNSPVARQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK G++ + + + +G S Sbjct: 120 HTDQFGFLRTADGA-NILSSTGEAIQVGQK-TAIRAEANGDLYNAETNQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 D V+ + N T ++ G LE SN + EM Q++ + + Sbjct: 178 ADQVDSLVKDGEGRLHVNGINTMNLPAGQGNIQNGVLETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|46906933|ref|YP_013322.1| flagellar basal body rod protein FlgG [Listeria monocytogenes serotype 4b str. F2365] gi|46880199|gb|AAT03499.1| putative flagellar basal-body rod protein [Listeria monocytogenes serotype 4b str. F2365] Length = 259 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVARQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK I + G++ + G+ + +G S Sbjct: 120 HSDQFGFLRTADGA-NLLSATGEAIQVGQKTSIRS-EANGDLYNAETGQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ + N T ++ G +E SN + EM Q++ + + Sbjct: 178 ANQADSLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|271500066|ref|YP_003333091.1| fagellar hook-basal body protein [Dickeya dadantii Ech586] gi|270343621|gb|ACZ76386.1| fagellar hook-basal body protein [Dickeya dadantii Ech586] Length = 399 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ TVGF+ + F+++ + K++ V Sbjct: 2 SFSQAVSGLNAASSNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 GS +T LD A+ G+ ++ L G ++ +R+G+F + ++V++ G Sbjct: 58 -LQDFGNGSINNTSRALDVAINGNGFYRLLDTNGSVVYSRNGQFTLDSSRNIVNSQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q + Sbjct: 117 TGYPATGTPPTIQQGASPVALS 138 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + +++ + G + + K +V+ + L + +G + ++ + + + Sbjct: 282 PGELTGYSISDDGTVVGSYSNSKTQVLGQIALANFANPEGLSPQGDNVWAATSNSGQAVV 341 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+G + E SN + E+ MI + + S I ++ + + Sbjct: 342 GLAGSGNLGKLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 397 >gi|254853114|ref|ZP_05242462.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL R2-503] gi|300764493|ref|ZP_07074486.1| flagellar basal-body rod protein [Listeria monocytogenes FSL N1-017] gi|258606464|gb|EEW19072.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL R2-503] gi|300514847|gb|EFK41901.1| flagellar basal-body rod protein [Listeria monocytogenes FSL N1-017] Length = 259 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G++ + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGSVARQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK G + + G+ + +G S Sbjct: 120 HSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEANGNLYNAETGQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ + N T ++ G +E SN + EM Q++ + + Sbjct: 178 ANQADSLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|107026757|ref|YP_624268.1| flagellar hook protein FlgE [Burkholderia cenocepacia AU 1054] gi|116692051|ref|YP_837584.1| flagellar hook protein FlgE [Burkholderia cenocepacia HI2424] gi|105896131|gb|ABF79295.1| flagellar basal body FlaE [Burkholderia cenocepacia AU 1054] gi|116650051|gb|ABK10691.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia HI2424] Length = 414 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 2/128 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVAS 61 + GL+ L + +N++N +TVGF+ + F+++ ++ ++ +I Sbjct: 2 GYQQGLSGLAGASSNLDVIGNNIANANTVGFKQGRANFADMYANSVATSVNTQIGIGTRL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+ ST + LD A+ G+ +F + S +RDG F +G++V A G+ Sbjct: 62 ASVQQNFGQGTINSTKSSLDVAINGNGFFQMSSNGVTTYSRDGTFHRDKNGAIVDAQGRN 121 Query: 122 PVLDMASV 129 + A Sbjct: 122 LMGYAAGA 129 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ V+ + L + + G V + P G Sbjct: 301 TTFSIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLVNIGGNQYAETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN N E+ +I + + + I + + Sbjct: 361 STNHGTLQGSALENSNVNLTTELVNLITAQRNYQANAQTIKTQQAVDQTLLN 412 >gi|288962673|ref|YP_003452967.1| flagellar hook protein [Azospirillum sp. B510] gi|288914939|dbj|BAI76423.1| flagellar hook protein [Azospirillum sp. B510] Length = 427 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G++ A RL+ ++DN+SN+ TVG++ V FS +V A + S V S Sbjct: 5 SAMRSGVSGMAAQSSRLAAISDNISNSQTVGYKRATVDFSTLVTAPGDRTSYSASGVQSN 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFAL-----ESPRGIILTRDGRFKVTDDGSLVSA 117 Y ++ G+ + TG+ D A+ GD +F + +P LTR G F D G L + Sbjct: 65 LHYQMQQDGTLLGTGSSTDMAISGDGFFVVGNRATGTPD-YALTRAGSFLPDDGGFLRNT 123 Query: 118 SGKY 121 +G+Y Sbjct: 124 AGQY 127 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 12/115 (10%) Query: 137 DEIFNVGEKGE-----ISQKG--KVIATMGLYSVDMSQGFVRRENSGI-----SPNIPPT 184 + +V G + G + + + + +V G V + + S + + Sbjct: 310 GRVTSVNVDGTGKLWALYDNGARQALYQVPVANVTNPDGLVAQTGNTFTLGRDSGTLTLS 369 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V LE SN + E+ +I + ++S TL+ ++ + E R Sbjct: 370 AGNSGKAGSVVGSALEQSNVDIATELVSLIETQRAYSSSATLVRTTDEMVEETTR 424 >gi|183598617|ref|ZP_02960110.1| hypothetical protein PROSTU_02017 [Providencia stuartii ATCC 25827] gi|188020796|gb|EDU58836.1| hypothetical protein PROSTU_02017 [Providencia stuartii ATCC 25827] Length = 406 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 10/138 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L ++ +N++N+ T GF+ F+++ + ++ V Sbjct: 2 SFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + + G T D A+ G+ +F ++ G I +RDG+F G+LV+ G Sbjct: 60 ---NFKDGPITRTDRPTDVAISGNGFFRVQDQNGDIFYSRDGQFIRDKSGNLVNNQG--- 113 Query: 123 VLDMASVPIQIPQKDEIF 140 + + P + + + Sbjct: 114 -MTVTGYPAGLDENGNVV 130 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISP-NIPPTPLEDLSG 191 F V + G I +Q+ +V+ + L + G V + + +P N P++ + G Sbjct: 293 TNFKVEDNGLIVANYSNQQKRVVGQVALSAFANPNGLVSQGGNVWAPSNASGNPMDGVPG 352 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + G LE SN + E+ MI + + + S I ++ + + Sbjct: 353 VGQFGKLTSGALESSNVDMSQELINMIVMQRNYQSNAQTIKTQDQMLQTMVN 404 >gi|51597637|ref|YP_071828.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|186896771|ref|YP_001873883.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis PB1/+] gi|51590919|emb|CAH22575.1| Putative FlgE-like flagellar hook protein [Yersinia pseudotuberculosis IP 32953] gi|186699797|gb|ACC90426.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis PB1/+] Length = 414 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A A ++L+T+++N++N+ T GF+ + +FS + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQ-----SQPLGVAVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + G TG LD A+ G +F + G TR G F+ DG LV+ G Sbjct: 57 SQNISKDGQKEKTGMGLDLAISGGGFFVVRESSGDKAYTRAGMFRSDVDGYLVNGQGMKL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 YP ++ I +I N G + S++ +A + Sbjct: 117 QGYPADAAGNIQAGIISDLKINNAGVPAKASEQLDFMANLN 157 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 12/105 (11%) Query: 141 NVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVRR------ENSGISPNIPPTPLEDL 189 + G + G+ + + L + G V + E++ + TP L Sbjct: 304 RIESDGSVYATFSNGERMLQGKVVLANFASPNGLVTQNGTSWSESNKSGAALLGTPGTGL 363 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G +++ G LE+SN + E+ ++ + + + T +I N+ M Sbjct: 364 LG-SLESGALENSNVDITAELVGLMTAQRNYQASTKIISTNDSMM 407 >gi|195953027|ref|YP_002121317.1| protein of unknown function DUF1078 domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932639|gb|ACG57339.1| protein of unknown function DUF1078 domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 583 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 12/131 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M SF ++ A LS +++NMSN DT+G++ + F VV + I+ Sbjct: 1 MLPSFYNAISGLDAFNNYLSIISNNMSNADTIGYKAVNPIFENVVANVNVGINTLTDTLK 60 Query: 57 -----SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKV 108 + V L+ ++G+F TG D A++G+ F L+ P + TR+G+F + Sbjct: 61 STIYGAGVIVDSTQLNWQLGNFEQTGNNTDLAIQGNGLFILQDPANAGNVFYTRNGQFTI 120 Query: 109 TDDGSLVSASG 119 + G +V+ G Sbjct: 121 SQQGYMVNPDG 131 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 ++ + G + G+ + + L + + ++ + PT L S Sbjct: 473 NVYVLSSDGTVVGVYSNGQSTPLYRVALAQFQDPNELIEKGSNLYTSIYTPTILLPGSAD 532 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + Q++ + + + ++ ++ + + Sbjct: 533 IIQSGMLEQSNVDIAQAYIQLVTAERSYQANAKVVTSSDNVLQATLN 579 >gi|296102908|ref|YP_003613054.1| flagellar hook protein FlgE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057367|gb|ADF62105.1| flagellar hook protein FlgE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 402 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 74/186 (39%), Gaps = 20/186 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F + G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPVLDM--------ASVPIQIPQK--DEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 YPV PI IP +I+ A + Sbjct: 117 TGYPVAGTPSTVQTGANPQPINIPTTLMAAKATTTASQQINLNSTDTAPTTAFDPANPDT 176 Query: 169 FVRREN 174 + ++ Sbjct: 177 YNKKGT 182 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + G + +++ +V+ + L + ++G ++ + L Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALL 344 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|238799107|ref|ZP_04642563.1| Flagellar hook protein FlgE [Yersinia mollaretii ATCC 43969] gi|238717054|gb|EEQ08914.1| Flagellar hook protein FlgE [Yersinia mollaretii ATCC 43969] Length = 420 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 G+ +T LD A+ + +F ++ GI R+G+FK+ D ++V+ G Sbjct: 60 ---DFNDGTATTTNRRLDLAISQNGFFRMQDSSGGIFYARNGQFKLDADRNIVNMQGLSL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP +P+ IPQ + G + Sbjct: 117 TGYPATGTPPTIQQGANPIPLSIPQDMISARATDSGSMVAN 157 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPL----EDL 189 F + G + + + +++ + + + +G ++ P+ Sbjct: 309 FQINNDGSVVGTYSNSQTQLLGQIVMANFANPEGLSSEGDNVWKETRASGNPMLGTAGGG 368 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 369 GFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 418 >gi|237731007|ref|ZP_04561488.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] gi|226906546|gb|EEH92464.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] Length = 417 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F + G + +R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSRNGQFKLDENRNIVNMQGLQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTVQQGANPAPITIPNT 142 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + G + +++ +V+ + L + ++G + ++ + Sbjct: 300 PGDLVSYQINNDGTVVGNYSNEQQQVLGQIVLANFANNEGLASQGDNVWAATQSSGVALL 359 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T E G + G LE SN + E+ MI + + S I ++ + + Sbjct: 360 GTAGEGNFG-KLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 415 >gi|313681188|ref|YP_004058926.1| flagellar hook protein flge [Sulfuricurvum kujiense DSM 16994] gi|313154048|gb|ADR32726.1| flagellar hook protein FlgE [Sulfuricurvum kujiense DSM 16994] Length = 758 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 19/160 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+ A + + ++N++N +T+G++ + FS+++ Sbjct: 1 MLRSLFAGVTGLQAHQIAMDVESNNIANVNTIGYKYSRANFSDLLAQTSQIATAPQGDIG 60 Query: 49 -KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGR 105 KN + + S + GS +T D A++GD +F + S G +R G Sbjct: 61 GKNAVQVGLGTTISSVTRI-MTQGSIQNTDKNTDVAIQGDGFFIVSSDAGSTYKYSRSGD 119 Query: 106 FKVTDDGSLVSASGKYP---VLDMASVPIQIPQKDEIFNV 142 FK G+ V +G V D A+ + N+ Sbjct: 120 FKFDAAGNFVDNNGFVVQGWVRDEATGKVDSTAPISNINI 159 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVT 193 + + G + G+ +A MG+ ++G V + + P+ + Sbjct: 646 IRIDQSGTLVGSFSNGRSFGLAQMGMAKFTNNEGLVSDGGNVYLQSANSGDPIIGTAATA 705 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ LE SN + + Q+I + + + + I ++ + + Sbjct: 706 GRGFMQSSSLEASNVDLSKSLTQLIIIQRGYQANGKTITTSDTLLETLL 754 >gi|262166282|ref|ZP_06034019.1| flagellar hook protein FlgE [Vibrio mimicus VM223] gi|262025998|gb|EEY44666.1| flagellar hook protein FlgE [Vibrio mimicus VM223] Length = 421 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 22/180 (12%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKEYLSKEVGSFI 74 L+T ++N++N +T GF+ + +F +V N V + K GS I Sbjct: 1 MDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKVAQQFHEGSSI 60 Query: 75 STGTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASGKYP-------- 122 T LD + G +FA+ P+ LTR+G F + + +V+A+ ++ Sbjct: 61 YTNNPLDLRIAGTGFFAVAKDKIVPQQNELTRNGAFHLDKNSYMVTANDEFLLGYEVNPD 120 Query: 123 ---VLDMASVPIQIPQK----DEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 VL PI IP + + N+ + G++ L+ + + + R +S Sbjct: 121 SGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPANGELKDP-TLFDITDPETYNRTTSS 179 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN---SGISPNIPPTPLE 187 I + + G+ + + L V QG ++ + E Sbjct: 310 IDFDENGSVLATYSNGQ----NTTLGRVALVRVANEQGLDKKGGTQWDATQFSGDKIWGE 365 Query: 188 DLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E+ +I + F + + ++ + ++ Sbjct: 366 SNKGSFGSISNGSLEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQ 419 >gi|226223313|ref|YP_002757420.1| flagellar hook-basal body protein FlgG [Listeria monocytogenes Clip81459] gi|225875775|emb|CAS04478.1| Putative flagellar hook-basal body protein FlgG [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 259 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVARQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK G++ + G+ + +G S Sbjct: 120 HSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEANGDLYNAETGQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ I N T ++ G +E SN + EM Q++ + + Sbjct: 178 ANQADSLVKDGEGRIHVNGINTMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|251789168|ref|YP_003003889.1| flagellar hook protein FlgE [Dickeya zeae Ech1591] gi|247537789|gb|ACT06410.1| flagellar basal body FlaE domain protein [Dickeya zeae Ech1591] Length = 405 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 8/158 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ TVGF+ + F+++ + +++ V Sbjct: 2 SFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTRVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 GS ST LD A+ G ++ L + G ++ +R+G+F + ++V+A G Sbjct: 58 -LQDFTNGSINSTSRALDVAINGSGFYRLLNGNGSVVYSRNGQFTLDSSRNIVNAQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG-EKGEISQKGKVIATM 158 P I + + + +S K IA++ Sbjct: 117 TGFPATGTPPAIQSGADPVGLSIPENTMSAKATNIASI 154 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + +++ G + +++ +++ + L + +G + ++ + N + Sbjct: 288 PGELTGYSISNDGSVIGSYSNKRTQLLGQIVLANFANPEGLSPQGDNVWAATNNSGQAVV 347 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + E SN + E+ MI + + S I ++ + + Sbjct: 348 GSAGTGNFGNLVGKATESSNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 403 >gi|281306984|pdb|3A69|A Chain A, Atomic Model Of The Bacterial Flagellar Hook Based On Docking An X-Ray Derived Structure And Terminal Two Alpha- Helices Into An 7.1 Angstrom Resolution Cryoem Map Length = 402 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 59 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 115 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 116 TGYPATGTPPTIQQGANPAPITIPNT 141 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 285 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 344 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|290474972|ref|YP_003467856.1| flagellar hook protein [Xenorhabdus bovienii SS-2004] gi|289174289|emb|CBJ81079.1| flagellar biosynthesis; hook protein [Xenorhabdus bovienii SS-2004] Length = 416 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 11/148 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F++V + K+S + Sbjct: 2 AFSQAVSGLNAAASNLDVIGNNIANSATFGFKSSSAAFADVFSGSDVGLGVKVSGM---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + + GS +T +LD A+ +F + G +R+G+F + D +L++ G Sbjct: 58 -VKNFKDGSTTTTSRQLDMAITQGGFFRMLDSNGSTFYSRNGQFNMDSDRNLINMQGMKL 116 Query: 120 -KYP-VLDMASVPIQIPQKDEIFNVGEK 145 YP V IQ ++ Sbjct: 117 TGYPAVQGANGPEIQKGAAPGPISIPRD 144 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 + V G+I +Q+ +V+ + L + +G + ++ + +P+ +G Sbjct: 303 TNYRVDSDGKIHGLYSNQQTQVLGQVVLANFSNPEGLAAQGDNVWVETGASGSPIVGTAG 362 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G LE SN + E+ MI + + S I ++ + + Sbjct: 363 SGNFGKLISGALEASNVDMSQELVNMIVAQRNYQSNAQTIKTQDQILQTLV 413 >gi|322616547|gb|EFY13456.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620512|gb|EFY17376.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622506|gb|EFY19351.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629657|gb|EFY26432.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632623|gb|EFY29369.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636882|gb|EFY33585.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641580|gb|EFY38218.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644070|gb|EFY40616.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650030|gb|EFY46448.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653955|gb|EFY50278.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658487|gb|EFY54749.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663345|gb|EFY59547.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670079|gb|EFY66219.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674857|gb|EFY70948.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676673|gb|EFY72740.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682595|gb|EFY78614.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686652|gb|EFY82631.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195766|gb|EFZ80942.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198342|gb|EFZ83446.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203174|gb|EFZ88204.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209177|gb|EFZ94114.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209681|gb|EFZ94610.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217863|gb|EGA02578.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222151|gb|EGA06535.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224923|gb|EGA09181.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229665|gb|EGA13788.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232890|gb|EGA16986.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240625|gb|EGA24667.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242939|gb|EGA26960.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250256|gb|EGA34145.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252631|gb|EGA36469.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258841|gb|EGA42494.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261030|gb|EGA44623.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266939|gb|EGA50424.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269980|gb|EGA53429.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 403 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIPNT 142 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 286 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 345 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 346 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 401 >gi|16760053|ref|NP_455670.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764533|ref|NP_460148.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142176|ref|NP_805518.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179694|ref|YP_216111.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167553035|ref|ZP_02346785.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994041|ref|ZP_02575133.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264030|ref|ZP_02686003.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467129|ref|ZP_02700971.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822620|ref|ZP_02834620.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442954|ref|YP_002040431.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197250199|ref|YP_002146866.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265088|ref|ZP_03165162.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245171|ref|YP_002215960.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204930842|ref|ZP_03221715.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353085|ref|YP_002226886.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857315|ref|YP_002243966.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161844|ref|ZP_03347554.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424680|ref|ZP_03357445.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582037|ref|ZP_03363863.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648926|ref|ZP_03378979.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865505|ref|ZP_03387624.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584319|ref|YP_002638117.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911003|ref|ZP_04654840.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289806609|ref|ZP_06537238.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289828580|ref|ZP_06546405.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392287|sp|P0A1J1|FLGE_SALTY RecName: Full=Flagellar hook protein flgE gi|60392288|sp|P0A1J2|FLGE_SALTI RecName: Full=Flagellar hook protein flgE gi|25511789|pir||AB0640 flagellar hook protein FlgE [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|47673|emb|CAA36022.1| flgE protein (AA 1-403) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419694|gb|AAL20107.1| hook protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502347|emb|CAD08301.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi] gi|29137806|gb|AAO69367.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62127327|gb|AAX65030.1| flagellar biosynthesis, hook protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194401617|gb|ACF61839.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195630413|gb|EDX49039.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213902|gb|ACH51299.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243343|gb|EDY25963.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939687|gb|ACH77020.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204320301|gb|EDZ05505.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272866|emb|CAR37795.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322416|gb|EDZ10255.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328054|gb|EDZ14818.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341012|gb|EDZ27776.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347322|gb|EDZ33953.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709118|emb|CAR33451.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468846|gb|ACN46676.1| flagellar hook protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246388|emb|CBG24197.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992951|gb|ACY87836.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157718|emb|CBW17210.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912164|dbj|BAJ36138.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086383|emb|CBY96156.1| Flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223795|gb|EFX48858.1| Flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322714164|gb|EFZ05735.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129447|gb|ADX16877.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623708|gb|EGE30053.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628165|gb|EGE34508.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988068|gb|AEF07051.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 403 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIPNT 142 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 286 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 345 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 346 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 401 >gi|258625234|ref|ZP_05720146.1| Flagellar hook protein flgE [Vibrio mimicus VM603] gi|258582481|gb|EEW07318.1| Flagellar hook protein flgE [Vibrio mimicus VM603] Length = 398 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A + L+T+++N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNKELNTISNNIANASTFGFKGSRTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F + + +G Sbjct: 58 QNFDKN-GSITGTGRAMDMAINGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNG 113 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 9/116 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDL 189 +++ ++ + GE ++G+V+ L + QG + ++ + + P+ + Sbjct: 287 VRVEDNGMVYATYDNGESQRQGQVV----LANFADPQGLSKVNDTAWTQSFSSGAPIMGI 342 Query: 190 SGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G + G LE SN + E+ ++ + + + I +K I Sbjct: 343 PGTGSLGELAPGSLEGSNVDLTSELVSLMTAQRNYQANAKTISTGDKLTQALFNAI 398 >gi|258622488|ref|ZP_05717510.1| Flagellar hook protein flgE [Vibrio mimicus VM573] gi|262173354|ref|ZP_06041031.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] gi|258585188|gb|EEW09915.1| Flagellar hook protein flgE [Vibrio mimicus VM573] gi|261890712|gb|EEY36699.1| flagellar hook protein FlgE [Vibrio mimicus MB-451] Length = 398 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A + L+T+++N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNKELNTISNNIANASTFGFKGSRTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F + + +G Sbjct: 58 QNFDKN-GSITGTGRAMDMAINGSGFFVTKDSMGQLLYTRSGVFNTDKNNFITGNNG 113 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 9/116 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDL 189 +++ ++ + GE ++G+V+ L + QG + ++ + + P+ + Sbjct: 287 VRVEDNGMVYATYDNGESQRQGQVV----LANFADPQGLSKVNDTAWTQSFSSGAPIMGI 342 Query: 190 SGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G + G LE SN + E+ ++ + + + I +K I Sbjct: 343 PGTGSLGELAPGSLEGSNVDLTSELVSLMTAQRNYQANAKTISTGDKLTQALFNAI 398 >gi|206603146|gb|EDZ39626.1| Probable flagellar hook protein FlgE [Leptospirillum sp. Group II '5-way CG'] Length = 457 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 +S + + A+ +S + +N++N +TVGF+ + F+ V G ++ Sbjct: 4 LSSMYVATSGLNAMGTDMSVIGNNITNLNTVGFKQGRAVFANVYGQTMTGRSNTVNTSQP 63 Query: 62 GKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 G GS ++ LD A++G+ + + S G TR+G + G + Sbjct: 64 GSGVYVDAIQQEFTQGSVQASTNALDLAIQGNGFLTVRSKDGQKFYTRNGELALDKTGRI 123 Query: 115 VSAS 118 V S Sbjct: 124 VDTS 127 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 12/119 (10%) Query: 135 QKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP------P 183 + G+I + KV+ + + S + G + +I Sbjct: 340 GDLNNLAISRDGKIVGSFSNGVQKVLGVVSIASFNNPGGLASVGGNAYIESIASGVPNFG 399 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P + G + LE S + +M MI + + + ++I + + + I Sbjct: 400 RPGQGGRGA-LLSNSLELSTTDLGRQMVDMITAERGYQASASIIATDNTILNTLLTRIG 457 >gi|315930325|gb|EFV09413.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 305] Length = 864 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 14/132 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------K 49 S G++ A + + +N+SN +T GF+ + F + Sbjct: 1 MRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRGG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFK 107 ++ Q V+ GS +T D A+ GD +F + G+ LTR G FK Sbjct: 61 SNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDFK 120 Query: 108 VTDDGSLVSASG 119 + G+ V+ +G Sbjct: 121 LDAYGNFVNNAG 132 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 752 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 811 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 812 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 861 >gi|56413836|ref|YP_150911.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362759|ref|YP_002142396.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128093|gb|AAV77599.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094236|emb|CAR59741.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 403 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIPNT 142 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 286 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGAALL 345 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 346 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 401 >gi|295690742|ref|YP_003594435.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] gi|295432645|gb|ADG11817.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] Length = 587 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 14/170 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ G++ +A L+ ++DN++N +TVG++ FS +V + + V Sbjct: 3 INSAMLAGVSGLVANSSALAAISDNIANVNTVGYKRSSSNFSTLVTSGSKNQTYSAGGVK 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFA-------LESPRGIILTRDGRFKVTDDGS 113 + + G ST + LD ++ G +F L + TR G F++ G Sbjct: 63 AQTHQFISQQGLTQSTTSNLDLSISGSGFFVATEKPENLTAADTRSFTRAGSFQLDSLGY 122 Query: 114 LVSASGKYP---VLDMASVPIQIPQKD----EIFNVGEKGEISQKGKVIA 156 L + +G Y + D + I D NVG G ++K + Sbjct: 123 LRNDAGLYLQGWLADPVTGTITPDPSDLMQLSSINVGTVGGTAEKTTRVG 172 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 12/116 (10%) Query: 135 QKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT----- 184 V E G +S + IA + + + G + Sbjct: 470 GNLTNIEVDEDGYVSAIFDNGVTRRIAQVAVATFSNPNGLKGVNGNAYRVTNESGTYSLK 529 Query: 185 -PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + +G ++ LE S + E +I + +++ + +I ++ + E + Sbjct: 530 PPGQGGAG-SLAPSTLEASTVDLSTEFTGLITTQRAYSASSKIITTADQMLEELLN 584 >gi|270262401|ref|ZP_06190672.1| flagellar hook protein FlgE [Serratia odorifera 4Rx13] gi|270043085|gb|EFA16178.1| flagellar hook protein FlgE [Serratia odorifera 4Rx13] Length = 410 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ V F+++ + + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATSGFKSGTVSFADMFAGSQVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASGKYP 122 + + G+ T LD A+ + +F L+ GI +R+G+FK+ ++ +L + G Sbjct: 60 ---NFKGGTTTGTSRALDVAISDNGFFRLQDKDGGIFYSRNGQFKLDENRNLTNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG-EKGEISQKGKVIATM 158 A P I Q + +G ++ K TM Sbjct: 117 TGFPAAGSPPTIQQGANPVPLSIPEGMMTAKSTTSGTM 154 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F + G + +Q+ +++ + L + +G + ++ P L+G Sbjct: 297 TNFQINNDGSVVGIYSNQQTQLLGQIVLTNFSNPEGLSSQGDNVWQETGASGQPRVGLAG 356 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G LE SN + E+ MI + + S I + + + Sbjct: 357 SGGFGKLTSGALEASNVDLSQELVNMIVAQRNYQSNAQTIKTQDSILQTLV 407 >gi|323967017|gb|EGB62443.1| fagellar hook-basal body protein [Escherichia coli M863] gi|327253475|gb|EGE65113.1| flagellar hook protein flgE [Escherichia coli STEC_7v] Length = 401 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|59712481|ref|YP_205257.1| flagellar hook protein FlgE [Vibrio fischeri ES114] gi|197335363|ref|YP_002156700.1| flagellar hook protein [Vibrio fischeri MJ11] gi|24459277|gb|AAL86630.1| FlgE [Vibrio fischeri ES114] gi|59480582|gb|AAW86369.1| flagellar hook protein FlgE [Vibrio fischeri ES114] gi|197316853|gb|ACH66300.1| flagellar hook protein [Vibrio fischeri MJ11] Length = 432 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A ++ L+T ++N++N +T GF+ + +F +V + N + K Sbjct: 3 YVALSGLAAAQKDLNTTSNNLANANTYGFKESRAEFGDVYSSSLFSNAKTTTGGGAQTTK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +FA+ P L+R+G F + ++ + +++ Sbjct: 63 VAQQFHEGSSIYTNNPMDLRISGQGFFAVAKDRLQPATNELSRNGAFHLDNENYVTTSND 122 Query: 120 KYPVL 124 ++ + Sbjct: 123 EFLLG 127 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 ++ + G I GK + + + V QG + + S Sbjct: 319 SKVDIDKSGNIVGSYSNGKDVTLGRVAMVRVTNQQGLAQNGGTQWSTTQASGAAIWGEAN 378 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S ++ G LE SN + E+ +I + F + + +D + + ++ Sbjct: 379 QGSFGDIQSGTLEQSNIDMTQELVDLISAQRNFQANSRSLDVHNQLQQNILQ 430 >gi|323976551|gb|EGB71639.1| fagellar hook-basal body protein [Escherichia coli TW10509] Length = 401 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|301051140|ref|ZP_07197970.1| flagellar hook protein FlgE [Escherichia coli MS 185-1] gi|300297161|gb|EFJ53546.1| flagellar hook protein FlgE [Escherichia coli MS 185-1] Length = 401 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|331006033|ref|ZP_08329375.1| Flagellar hook protein flgE [gamma proteobacterium IMCC1989] gi|330420162|gb|EGG94486.1| Flagellar hook protein flgE [gamma proteobacterium IMCC1989] Length = 877 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVASG 62 FN+ L+ A L +N++N T GF+ + +F ++ A+ + ++Q S V Sbjct: 3 FNVALSGIRAANSDLRVTGNNIANASTTGFKESRTEFGDIYSTSALGSGLNQPGSGVRVQ 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 G+ T LD ++ G +F TR G F + +G +V+ + Sbjct: 63 DIAQQFGQGNISFTENSLDLSISGSGFFVTSFAGDQSFTRAGTFGLDQEGFIVNNT 118 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVT 193 +V + G I + +V+A + L QG ++ + P+ G Sbjct: 766 IDVDDSGIIFARYTNGENQVLAQVALADFANVQGLQSDGDTAWVQTFESGEPIIGGPGTA 825 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LEDSN + ++ +I + F + I+ + I Sbjct: 826 SLGLIQSGALEDSNVDLSEQLVNLIIAQRNFQANAKTIETADTITQTIIN 875 >gi|218700421|ref|YP_002408050.1| flagellar hook protein FlgE [Escherichia coli IAI39] gi|218370407|emb|CAR18214.1| flagellar hook protein [Escherichia coli IAI39] Length = 400 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 11/116 (9%) Query: 134 PQKDEIFNVGEKGEI----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIPP 183 P + + + G + S + + + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGIVLANFANNEGLASEGDNVWSATQSSGVALLG 343 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 TAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 398 >gi|149195336|ref|ZP_01872423.1| flagellar hook protein [Caminibacter mediatlanticus TB-2] gi|149134528|gb|EDM23017.1| flagellar hook protein [Caminibacter mediatlanticus TB-2] Length = 634 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 4/135 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M TSF G++ ++ + L DN++N +T GF+ +F+ + ++ Sbjct: 1 MTTSFYNGVSGLISFQNGLDIWGDNIANINTPGFKESIPEFATIFSQTLSNASPTSDIGL 60 Query: 61 SG---KEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +G+ + + D A+ + + + TR+G F +G LV+ Sbjct: 61 GSLLHSTAKDMSIGNIVDSDNPFDIAIADEKGFLGVSYNGETFYTRNGNFTRDANGFLVN 120 Query: 117 ASGKYPVLDMASVPI 131 SG Y ++ A+ I Sbjct: 121 DSGAYLLVANANNLI 135 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 26/143 (18%) Query: 105 RFKVT--DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 F ++G L + +D I I ++ G + ++ Sbjct: 507 SFNQDGVEEGFLQNYQ-----IDENGKIIGIFSNNQDITFG-------------QIPIFH 548 Query: 163 VDMSQGFVRRENSGISPNIPPTPL-----EDLSGV-TVKRGFLEDSNANSMYEMGQMIHL 216 QG ++ E+ S + + LE SN N M ++I Sbjct: 549 FQNPQGLENIGSNLFRETSNSNKAFLYTNENGSYIGKLLPSKLETSNVNMSQAMTELIVT 608 Query: 217 TQKFNSITTLIDENEKSMLEAIR 239 + F + + +++ + +AI Sbjct: 609 QKAFQASAKTVTTSDEMIQKAIN 631 >gi|324113871|gb|EGC07845.1| fagellar hook-basal body protein [Escherichia fergusonii B253] gi|325497616|gb|EGC95475.1| flagellar hook protein FlgE [Escherichia fergusonii ECD227] Length = 401 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDIAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 A P I Q N+ Sbjct: 117 TGYPAAGTPPTIQQGANPTNIS 138 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + G + +++ +++ + L + ++G ++ + L Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQASGVALL 343 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|22126390|ref|NP_669813.1| flagellar hook protein FlgE [Yersinia pestis KIM 10] gi|45441409|ref|NP_992948.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|51596011|ref|YP_070202.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|108807173|ref|YP_651089.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|108812483|ref|YP_648250.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|145598610|ref|YP_001162686.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|149366251|ref|ZP_01888286.1| flagellar hook protein FlgE [Yersinia pestis CA88-4125] gi|153950658|ref|YP_001401290.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|162421636|ref|YP_001606473.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165925992|ref|ZP_02221824.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. F1991016] gi|165938693|ref|ZP_02227248.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. IP275] gi|166010935|ref|ZP_02231833.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. E1979001] gi|166210871|ref|ZP_02236906.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. B42003004] gi|167401045|ref|ZP_02306548.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420383|ref|ZP_02312136.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425748|ref|ZP_02317501.1| flagellar hook protein FlgE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024647|ref|YP_001721152.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis YPIII] gi|186895114|ref|YP_001872226.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis PB1/+] gi|218928922|ref|YP_002346797.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|229896242|ref|ZP_04511412.1| flagellar hook protein FlgE [Yersinia pestis Pestoides A] gi|229897177|ref|ZP_04512333.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897903|ref|ZP_04513054.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. India 195] gi|229902865|ref|ZP_04517982.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|270486645|ref|ZP_06203719.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294504030|ref|YP_003568092.1| flagellar hook protein [Yersinia pestis Z176003] gi|21959376|gb|AAM86064.1|AE013853_12 hook protein [Yersinia pestis KIM 10] gi|45436269|gb|AAS61825.1| flagellar hook protein FlgE [Yersinia pestis biovar Microtus str. 91001] gi|51589293|emb|CAH20914.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 32953] gi|108776131|gb|ABG18650.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|108779086|gb|ABG13144.1| flagellar hook protein FlgE [Yersinia pestis Antiqua] gi|115347533|emb|CAL20442.1| flagellar hook protein FlgE [Yersinia pestis CO92] gi|145210306|gb|ABP39713.1| flagellar hook protein FlgE [Yersinia pestis Pestoides F] gi|149292664|gb|EDM42738.1| flagellar hook protein FlgE [Yersinia pestis CA88-4125] gi|152962153|gb|ABS49614.1| flagellar hook protein FlgE [Yersinia pseudotuberculosis IP 31758] gi|162354451|gb|ABX88399.1| flagellar hook protein FlgE [Yersinia pestis Angola] gi|165913307|gb|EDR31929.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. IP275] gi|165922196|gb|EDR39373.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. F1991016] gi|165990279|gb|EDR42580.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. E1979001] gi|166208051|gb|EDR52531.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. B42003004] gi|166962078|gb|EDR58099.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049434|gb|EDR60842.1| flagellar hook protein FlgE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055147|gb|EDR64944.1| flagellar hook protein FlgE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751181|gb|ACA68699.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis YPIII] gi|186698140|gb|ACC88769.1| flagellar basal body FlaE domain protein [Yersinia pseudotuberculosis PB1/+] gi|229680312|gb|EEO76411.1| flagellar hook protein FlgE [Yersinia pestis Nepal516] gi|229688944|gb|EEO81009.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. India 195] gi|229693514|gb|EEO83563.1| flagellar hook protein FlgE [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701165|gb|EEO89194.1| flagellar hook protein FlgE [Yersinia pestis Pestoides A] gi|262361784|gb|ACY58505.1| flagellar hook protein [Yersinia pestis D106004] gi|262366080|gb|ACY62637.1| flagellar hook protein [Yersinia pestis D182038] gi|270335149|gb|EFA45926.1| flagellar hook protein FlgE [Yersinia pestis KIM D27] gi|294354489|gb|ADE64830.1| flagellar hook protein [Yersinia pestis Z176003] gi|320015467|gb|ADV99038.1| flagellar hook protein FlgE [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 428 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGMNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 G+ +T LD A+ + +F ++ GI R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFNDGTATTTNRRLDLAISQNGFFRMQDSSGGIYYARNGQFKLDENRNIVNMQGLNL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP VP+ IPQ G + Sbjct: 117 TGYPATGTPPTVQQGANPVPLSIPQDMISAKATTSGNMVAN 157 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 F + G + +Q+ +++ + + + +G ++ P +G Sbjct: 317 FQINSDGSVVGTYSNQQTQLLGQIVMVNFSNPEGLSSEGDNVWKETQSSGNPTLGTAGSG 376 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 377 GFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLV 425 >gi|156934440|ref|YP_001438356.1| flagellar hook protein FlgE [Cronobacter sakazakii ATCC BAA-894] gi|156532694|gb|ABU77520.1| hypothetical protein ESA_02271 [Cronobacter sakazakii ATCC BAA-894] Length = 409 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ V F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAASTNLDVIGNNIANSATYGFKSGSVSFADMFAGSKAGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFA-LESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 G +TG +LD A+ + +F L+S G+ +R+G+FK+ + +LV+ G Sbjct: 60 ---DFGDGVTTNTGRKLDVAISQNGFFRLLDSNGGVFYSRNGQFKLDEKSNLVNMQGMQV 116 Query: 123 VL-DMASVPIQIPQKDEIF 140 P I Q + Sbjct: 117 TGYPATGTPPTIQQGADPI 135 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGL 160 F + G+ SG +L + P + V E G + ++K +++ + L Sbjct: 265 FSMNLTGTTQQNSGANVLLTSNQNGYK-PGDLVGYQVNEDGSLVGNYSNEKSQLLGQIVL 323 Query: 161 YSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIH 215 + +G + ++ + L +G + G LE SN + E+ MI Sbjct: 324 ANFANPEGLSSQGDNVWSASTASGVALLGSAGTGNFGKLTSGALEASNVDLSKELVNMIV 383 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + + S I ++ + + Sbjct: 384 AQRNYQSNAQTIKTQDQILNTLVN 407 >gi|170683341|ref|YP_001744104.1| flagellar hook protein FlgE [Escherichia coli SMS-3-5] gi|300938641|ref|ZP_07153370.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] gi|170521059|gb|ACB19237.1| flagellar hook protein FlgE [Escherichia coli SMS-3-5] gi|300456426|gb|EFK19919.1| flagellar hook protein FlgE [Escherichia coli MS 21-1] Length = 401 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|161503735|ref|YP_001570847.1| flagellar hook protein FlgE [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865082|gb|ABX21705.1| hypothetical protein SARI_01820 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 402 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 18/178 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 YP PI IP + + + + + Sbjct: 117 TGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQVNLNSTDPVPTKAFNPADA 174 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 285 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 344 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|330893050|gb|EGH25711.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 165 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFN ++ A +RL +N++N+ T+GF++ + +FS + A + + + V G Sbjct: 2 SFNTAISGIHAANKRLEVAGNNIANSGTIGFKSSRAQFSALYSA--SQLGSGRNAVGDGV 59 Query: 64 EYLSKEVG-----SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 S + S ++G LD ++G+ +F + + TR G F +V + Sbjct: 60 CLASMQQNFNQGESMTTSGNPLDMRIQGNGFFVVSDGGSLAYTRAGAFLKDAANFVVDSE 119 Query: 119 GK 120 G Sbjct: 120 GG 121 >gi|90577344|ref|ZP_01233155.1| flagellar hook protein [Vibrio angustum S14] gi|90440430|gb|EAS65610.1| flagellar hook protein [Vibrio angustum S14] Length = 408 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A +L+T+++N++N T GF+ + +FS V N + VA+ Sbjct: 2 SFDIALSGLDATNVQLNTISNNIANVSTSGFKESRTEFSAVY----NGMQAGGVEVAAIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG LD A+ G +F + G + TR G F D ++VS +G Sbjct: 58 QNFDKT-GSITGTGRPLDLAISGSGFFVTKDHTGQTLYTRSGVFNSDKDNNIVSNNG 113 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 7/95 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 ++ + L QG V+ + + P G V G LE SN + Sbjct: 315 QLQGQVMLADFANPQGLVKTNGTSWIQSFSSGAPVNGAPSTGTLGGLVA-GALEGSNVDL 373 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I ++K + Sbjct: 374 TSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 408 >gi|242278416|ref|YP_002990545.1| hypothetical protein Desal_0941 [Desulfovibrio salexigens DSM 2638] gi|242121310|gb|ACS79006.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 513 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 5/123 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA---IKNDIDQKISFV 59 +S G++ S V++N++N+ TVGF++ F +V + + Q + Sbjct: 5 SSLYTGISGLYVNSFATSVVSNNLANSSTVGFKSSDAIFEDVFYSTLTTGGGLAQVGNGA 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSA 117 G++ ++ + A+ GD ++ + P TR G F DG LV A Sbjct: 65 GVSTINTDYSQGTYQNSSISTNVAINGDGYYMVVDPDTSTTYYTRAGNFDFDKDGFLVDA 124 Query: 118 SGK 120 G Sbjct: 125 YGN 127 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 157 TMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMG 211 +GL S G + + + +G + V LE SN + +M Sbjct: 423 QLGLASFTNESGLKAEGGTLFRATTDSGEAIIGTAGSSGFGSVVSNALEGSNVDLASQMT 482 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 ++I + + + + ++ + + AI Sbjct: 483 ELIIIQSSYQANSKVVTTADTLLQTAI 509 >gi|324007916|gb|EGB77135.1| flagellar hook protein FlgE [Escherichia coli MS 57-2] Length = 401 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|237810461|ref|YP_002894912.1| flagellar hook protein FlgE [Burkholderia pseudomallei MSHR346] gi|237503327|gb|ACQ95645.1| flagellar hook protein FlgE [Burkholderia pseudomallei MSHR346] Length = 413 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ + L + +N++N +TVGF+ +FS++ + + Sbjct: 2 GYQQGLSGLVGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTML 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Sbjct: 62 ASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAANANGVINTAATVPLQAPTTNIAPTATTKITGQF 160 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ + + L + + G V N+ + P G Sbjct: 301 TTFSIGADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQYVESAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ ++I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|124516303|gb|EAY57811.1| probable flagellar hook protein FlgE [Leptospirillum rubarum] Length = 457 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 +S + + A+ +S + +N++N +TVGF+ + F+ V G ++ Sbjct: 4 LSSMYVATSGLNAMGTDMSVIGNNITNLNTVGFKQGRAVFANVYGQTMTGRSNTVNTSQP 63 Query: 62 GKEY------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSL 114 G GS ++ LD A++G+ + + S G TR+G + G + Sbjct: 64 GSGVYVDAIQQEFTQGSVQASTNALDLAIQGNGFLTVRSKDGQKFYTRNGELALDKTGRI 123 Query: 115 VSAS 118 V S Sbjct: 124 VDTS 127 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 12/119 (10%) Query: 135 QKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP------P 183 +G G+I + KV+ + + S + G + +I Sbjct: 340 GDLNNLAIGRDGKIVGSFSNGVQKVLGVVAIASFNNPGGLASVGGNAYIESIASGVPNFG 399 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 P + G + LE S + +M MI + + + ++I + + + I Sbjct: 400 RPGQGGRGA-LLSNSLELSTTDLGRQMVDMITAERGYQASASIIATDNTILNTLLTRIG 457 >gi|188592117|ref|YP_001796715.1| flagellar hook protein flge [Cupriavidus taiwanensis LMG 19424] gi|170938491|emb|CAP63478.1| FlgE: Flagellar hook protein [Cupriavidus taiwanensis LMG 19424] Length = 414 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 11/135 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F G++ A L + +N++N +TVG++ +F++V K + +++ V Sbjct: 2 GFGQGVSGLNAAASNLDVIGNNIANANTVGYKQSAAQFADVYAGTKIGLGVRVNSV---- 57 Query: 64 EYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG-- 119 S G+ ++G LD A+ G+ +F L SP G + +R+G+F+ +DG + + G Sbjct: 58 -VQSFNQGNIEASGRSLDVAITNGNGFFRLTSPEGAVYYSRNGQFQRQEDGRITNMQGLQ 116 Query: 120 --KYPVLDMASVPIQ 132 YP +Q Sbjct: 117 VTGYPAGVAGGAGVQ 131 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 9/109 (8%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 F+V G I+ K + + + + +G ++ + PL ++G Sbjct: 305 FSVNGDGTITGNYSNEQTKPLGQIVMAAFGNVEGLKPEGDNVWSATGSSGQPLLGVAGGS 364 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ +E SN + ++ +I + + + I + M + Sbjct: 365 LGTLRSNAVEASNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVN 413 >gi|78776233|ref|YP_392548.1| flagellar hook protein FlgE [Sulfurimonas denitrificans DSM 1251] gi|78496773|gb|ABB43313.1| Flagellar hook FlgE [Sulfurimonas denitrificans DSM 1251] Length = 718 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 14/133 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDI 52 M S G++ + + + ++N++N +TVG++ + FS+++ + Sbjct: 1 MLKSLFAGVSGLQSHQVAMDVESNNIANVNTVGYKYSRANFSDLLAQTRAIATAPQGELG 60 Query: 53 DQKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRF 106 + V G S GS ++ D A++GD +F + G TR G F Sbjct: 61 GKNPVQVGLGATVSSMTRIFSQGSVQNSDKNTDVAIQGDGFFIISPDGGNTYKYTRAGDF 120 Query: 107 KVTDDGSLVSASG 119 K G+ V +G Sbjct: 121 KFDAGGNFVDNNG 133 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSGVT 193 + + G + G+ +A +G+ ++G N + P+ + Sbjct: 606 IRIDQSGTLIGSFSNGRSFGLAQIGMAKFTNNEGLSTEGGNVYVQTANSGDPIIGTAATA 665 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ LE SN + + Q+I + + + + I +++ + I Sbjct: 666 GRGFMQAAALEASNVDLSLALTQLIIIQRGYQANGKTITTSDQLLQTLI 714 >gi|54297182|ref|YP_123551.1| flagellar hook protein FlgE [Legionella pneumophila str. Paris] gi|53750967|emb|CAH12378.1| Flagellar hook protein FlgE [Legionella pneumophila str. Paris] Length = 437 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVASG 62 FN L+ A + L + +N++N+ T+GF+ + +F+++ A + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 + + S G+ ++ LD A+ G +F L + TR G+FK+ ++ +V+A+ + Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKVYTRAGQFKLNNENYIVNANNQRL 122 Query: 123 --VLDMASVPIQIPQKDEIFN 141 +L ++ I D N Sbjct: 123 TGLLTDSNGAITGASGDLRIN 143 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 10/108 (9%) Query: 142 VGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT-- 193 + + G I G+ + + L + + N+ + PL G Sbjct: 328 IDDSGVIYGRYTNGQSLSMGQIQLANFADPESLQNLGNTNWAETTSSGQPLISAPGSGGL 387 Query: 194 --VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE+SN + E+ +I + F + I + I Sbjct: 388 GLINSGRLEESNVDLTSELVNLISAQRNFQANAQTIRTGDAITQTIIN 435 >gi|161614600|ref|YP_001588565.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168237259|ref|ZP_02662317.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244776|ref|ZP_02669708.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449419|ref|YP_002045176.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736988|ref|YP_002114176.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161363964|gb|ABX67732.1| hypothetical protein SPAB_02350 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407723|gb|ACF67942.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712490|gb|ACF91711.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289882|gb|EDY29243.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205336442|gb|EDZ23206.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 403 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTIQQGANPAPITIPNT 142 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 286 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 345 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 346 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 401 >gi|319403978|emb|CBI77566.1| Flagellar hook protein FlgE [Bartonella rochalimae ATCC BAA-1498] Length = 402 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLS VADN++N T+G++ V+FS V V Sbjct: 6 MMR---TGVSGMNAQGTRLSGVADNVANAGTIGYKRTNVQFSNYVTP-SGQYAYVSGGVK 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G +TG D + G+ +F + G LTR G F DG L + +G Sbjct: 62 SHIGHDISIGGPARATGRSGDTMIHGNGFFRVADENGKEFLTRAGSFVRDKDGYLRNTAG 121 Query: 120 KYPVLDMASVPIQI 133 Y +L+ IQI Sbjct: 122 YY-LLNEDGEKIQI 134 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 13/137 (9%) Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQG 168 LV+ G + + ++ D F G+ GEI +QK + I +G+ +V Sbjct: 265 LVTQKGNLFAFEGEADGMESGAFDG-FTFGKNGEIEVMYSNQKTRTIGYIGVTTVASPDS 323 Query: 169 F------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 V NS P + P + + G T+ G+LEDSN + E+ MI + + + Sbjct: 324 LTFLGGTVFETNSQTGPQMMGRPGDGVFG-TLSSGYLEDSNVDMGDELTDMIEAQRNYTA 382 Query: 223 ITTLIDENEKSMLEAIR 239 + + + M + Sbjct: 383 NSKVFQTGSELMDVIVN 399 >gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] Length = 642 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 13/145 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 242 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 299 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G Sbjct: 300 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQL 356 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YPV P I Q N+ Sbjct: 357 TGYPV---TGTPPTIQQGANPTNIS 378 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ + L + ++G ++ + Sbjct: 525 PGDLVSYQINDDGTVVGNNSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 584 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 585 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVN 640 >gi|26247216|ref|NP_753256.1| flagellar hook protein FlgE [Escherichia coli CFT073] gi|227886566|ref|ZP_04004371.1| flagellar hook protein FlgE [Escherichia coli 83972] gi|300974380|ref|ZP_07172592.1| flagellar hook protein FlgE [Escherichia coli MS 45-1] gi|26107617|gb|AAN79816.1|AE016759_90 Flagellar hook protein flgE [Escherichia coli CFT073] gi|227836770|gb|EEJ47236.1| flagellar hook protein FlgE [Escherichia coli 83972] gi|300410623|gb|EFJ94161.1| flagellar hook protein FlgE [Escherichia coli MS 45-1] gi|307553078|gb|ADN45853.1| flagellar hook protein FlgE [Escherichia coli ABU 83972] gi|315291070|gb|EFU50433.1| flagellar hook protein FlgE [Escherichia coli MS 153-1] Length = 401 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|238755324|ref|ZP_04616667.1| Flagellar hook protein FlgE [Yersinia ruckeri ATCC 29473] gi|238706460|gb|EEP98834.1| Flagellar hook protein FlgE [Yersinia ruckeri ATCC 29473] Length = 427 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 8/158 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF++ V F+++ + + K++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKSGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYP 122 G+ +T LD A+ +F LE GI R+G+F++ ++ ++VS G + Sbjct: 60 ---DFNDGTPTTTNRRLDLAISQSGFFRLEDSSGGISYARNGQFRLDENRNIVSQQGLHL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG-EKGEISQKGKVIATM 158 P + Q + +G I+ K TM Sbjct: 117 TGYPATGTPPTVQQGANPVPLTIPQGMIAAKATTAGTM 154 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-----GISPNIPPTPLEDL 189 F + + G + +Q+ +++ + L + +G + ++ G S Sbjct: 316 FQIEKDGSVVGTYSNQQKQLLGQIVLTNFANPEGLSPQGDNVWKETGSSGAAIIGTAGGG 375 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 376 GFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 425 >gi|222147589|ref|YP_002548546.1| flagellar hook protein FlgE [Agrobacterium vitis S4] gi|221734577|gb|ACM35540.1| flagellar hook protein [Agrobacterium vitis S4] Length = 418 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 9/162 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S N ++ A +LSTV DN++N+DT G++ + FS +V V + Sbjct: 6 SMNTAVSGLQAQASKLSTVGDNVANSDTTGYKRVSTAFSSLVVGSSGSGTYNSGGVQTTT 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 E GS+ S+ +E D A++GD +F ++ G + LTR G FK D+G +V+++G Y Sbjct: 66 VNSISEEGSYQSSTSETDLAIKGDGYFVVQDEAGSVFLTRAGDFKADDNGYMVNSAG-YT 124 Query: 123 VLD---MASVP---IQIPQKDEIFNVGEKGEISQKGKVIATM 158 +L P I + E + + IS A + Sbjct: 125 LLGYSYENGEPASVINGFEGLEPVKI-QDNSISANATTNALI 165 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 30/114 (26%), Gaps = 10/114 (8%) Query: 135 QKDEIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTP---- 185 V G I Q G + L +V + Sbjct: 301 SAASSVTVNSSGNIVATYQDGSTANLYKVALATVASPDNMKSVNGTAYQVTADAGTVVVG 360 Query: 186 -LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 S ++ LE SN + E+ MI + +++ + + + I Sbjct: 361 FANTGSFGSINSKTLETSNVDLATELTNMIQSQRSYSANSKVFQTAADMLDTLI 414 >gi|32490790|ref|NP_871044.1| hypothetical protein WGLp041 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165996|dbj|BAC24187.1| flgE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 410 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 21/182 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF G+ + Q L + +N++N+ T+GF++ V FS++ + ++S V Sbjct: 2 SFIQGINGINSAAQALDVIGNNIANSQTIGFKSSYVSFSDIFSGSMVGLGSQLSNVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVS------ 116 + GS ++ LD A+ G+ +F L G I TR+G FK+ +V+ Sbjct: 60 ---NFASGSMVTGSKNLDMAISGNGFFRLSDSGGKIYFTRNGEFKLNSHRQIVNLQNKFL 116 Query: 117 ----ASGKYPVLDMAS--VPIQIPQKDEIFNVGEKGEISQK---GKVIATMGLYSVDMSQ 167 A G P +D S I IP V +GEI + ++++ + Sbjct: 117 TGYQARGNPPSIDSGSSIENIIIPSTSMNPVVSTEGEIHGNLKSDVDVPKNSIFNIKNPK 176 Query: 168 GF 169 + Sbjct: 177 SY 178 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 +NV + G+I ++IA + + + + G + + P E Sbjct: 297 NDYNVSDSGKIIANYSNGQTQLIAQIAMANFTNNLGLTPNGENCWLESAESGPAIIGLSE 356 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S + LE SN + E+ +M+ + S I ++ + + Sbjct: 357 TGSFGRISGQKLESSNVDISNELVKMMTQQSNYQSNAQTIKTQDQLLQILVN 408 >gi|157146226|ref|YP_001453545.1| flagellar hook protein FlgE [Citrobacter koseri ATCC BAA-895] gi|157083431|gb|ABV13109.1| hypothetical protein CKO_01983 [Citrobacter koseri ATCC BAA-895] Length = 401 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTIQQGANPGPITIPNT 142 Score = 71.6 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 343 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFGKLTNGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|118474252|ref|YP_891218.1| flagellar hook protein [Campylobacter fetus subsp. fetus 82-40] gi|118413478|gb|ABK81898.1| flagellar hook protein [Campylobacter fetus subsp. fetus 82-40] Length = 546 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 8/146 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G++ + + +++++SN +TVG+++ +F ++ N Sbjct: 1 MMIGYYNGISGIKSGNFGIDVISNDISNINTVGYKSSTAEFKSILYQSLNQTSTSPVTSQ 60 Query: 61 SG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGS 113 G L+ + GS +T D A+ GD +F L G TR+G F +G Sbjct: 61 IGLGSTSMATSLNFKPGSLQNTDKVFDLAIVGDGFFGLSGINGEQYFTRNGDFSKDVNGD 120 Query: 114 LVSASGKYPVLDMAS-VPIQIPQKDE 138 +V+ +G Y + MA+ I + E Sbjct: 121 IVNRNGLYLLGTMANLNAIALSPNAE 146 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 12/116 (10%) Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR-ENSGISPNIPPTP----- 185 + E+ + + G K +A + LY +QG + EN+ + P Sbjct: 432 TMNDNGEVVAIFDNG----KMASVAKVALYHFQNNQGLSKSSENTYQTTANSGQPIFYQD 487 Query: 186 --LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +K LE SN + + +I + + +++ I +++ + +AI Sbjct: 488 QNGNVVYGAAIKNSTLEMSNVDLGVSLTDLIIMQKAYDASAKSITTSDQMIQKAIN 543 >gi|295096225|emb|CBK85315.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 402 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 13/145 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F + G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YPV A P + + Sbjct: 117 TGYPV---AGTPPTVQTGANPQAIS 138 Score = 72.0 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + G + +++ +V+ + L + ++G ++ + L Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALL 344 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|192289142|ref|YP_001989747.1| flagellar hook protein FlgE [Rhodopseudomonas palustris TIE-1] gi|192282891|gb|ACE99271.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris TIE-1] Length = 421 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A A Q LS ++DN++N+DT G++T FS++V A + V Sbjct: 6 ALSSAISALNAQSQSLSMISDNIANSDTTGYKTTSAMFSQLVTASSSATSYASGGVTVAG 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGII-LTRDGRFKVTDDGSLVSASGK 120 + G +T D A++G +F + ++ G TR+G F + + G LV++ G Sbjct: 66 RANISQQGLLAATSNATDVAIQGSGFFVVSDQTSGGTTSYTRNGAFSIDNAGYLVNS-GY 124 Query: 121 Y 121 Y Sbjct: 125 Y 125 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGF------VRRENSGISPNIPPTPL 186 VG+ G + G+ IA + + + G + + T Sbjct: 307 SSIAVGDDGTVNATYSNGQTIAIYKIAVATFKDPDGLSVNSYGIYSVTAASGDASVQTSG 366 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + +G + LE S ++ + MI Q +++ + +I K I Sbjct: 367 SNGAG-KIYGSELESSTTDTSSQFASMISAQQAYSAASQVITTVNKMFDTLI 417 >gi|297517866|ref|ZP_06936252.1| flagellar hook protein FlgE [Escherichia coli OP50] Length = 401 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|53717914|ref|YP_106900.1| flagellar hook protein FlgE [Burkholderia pseudomallei K96243] gi|53724565|ref|YP_104798.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 23344] gi|67641538|ref|ZP_00440315.1| flagellar hook protein FlgE [Burkholderia mallei GB8 horse 4] gi|76810959|ref|YP_331879.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1710b] gi|121599135|ref|YP_994291.1| flagellar hook protein FlgE [Burkholderia mallei SAVP1] gi|124384593|ref|YP_001028060.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10229] gi|126449658|ref|YP_001082867.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10247] gi|126453793|ref|YP_001064564.1| flagellar hook protein FlgE [Burkholderia pseudomallei 1106a] gi|167001537|ref|ZP_02267332.1| flagellar hook protein FlgE [Burkholderia mallei PRL-20] gi|167717660|ref|ZP_02400896.1| flagellar hook protein FlgE [Burkholderia pseudomallei DM98] gi|167736703|ref|ZP_02409477.1| flagellar hook protein FlgE [Burkholderia pseudomallei 14] gi|167813802|ref|ZP_02445482.1| flagellar hook protein FlgE [Burkholderia pseudomallei 91] gi|167822318|ref|ZP_02453789.1| flagellar hook protein FlgE [Burkholderia pseudomallei 9] gi|167843908|ref|ZP_02469416.1| flagellar hook protein FlgE [Burkholderia pseudomallei B7210] gi|167892410|ref|ZP_02479812.1| flagellar hook protein FlgE [Burkholderia pseudomallei 7894] gi|167900908|ref|ZP_02488113.1| flagellar hook protein FlgE [Burkholderia pseudomallei NCTC 13177] gi|167909127|ref|ZP_02496218.1| flagellar hook protein FlgE [Burkholderia pseudomallei 112] gi|167917164|ref|ZP_02504255.1| flagellar hook protein FlgE [Burkholderia pseudomallei BCC215] gi|217424944|ref|ZP_03456440.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 576] gi|226199793|ref|ZP_03795344.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pakistan 9] gi|242315744|ref|ZP_04814760.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106b] gi|254182140|ref|ZP_04888737.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1655] gi|254188070|ref|ZP_04894582.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pasteur 52237] gi|254196353|ref|ZP_04902777.1| flagellar basal body protein FlaE [Burkholderia pseudomallei S13] gi|254201896|ref|ZP_04908260.1| flagellar hook protein FlgE [Burkholderia mallei FMH] gi|254207230|ref|ZP_04913581.1| flagellar hook protein FlgE [Burkholderia mallei JHU] gi|254259636|ref|ZP_04950690.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1710a] gi|254295814|ref|ZP_04963271.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 406e] gi|254359732|ref|ZP_04976003.1| flagellar hook protein FlgE [Burkholderia mallei 2002721280] gi|52208328|emb|CAH34261.1| putative flagellar hook protein [Burkholderia pseudomallei K96243] gi|52427988|gb|AAU48581.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 23344] gi|76580412|gb|ABA49887.1| Flagella basal body rod protein [Burkholderia pseudomallei 1710b] gi|121227945|gb|ABM50463.1| flagellar hook protein FlgE [Burkholderia mallei SAVP1] gi|124292613|gb|ABN01882.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10229] gi|126227435|gb|ABN90975.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106a] gi|126242528|gb|ABO05621.1| flagellar hook protein FlgE [Burkholderia mallei NCTC 10247] gi|147747790|gb|EDK54866.1| flagellar hook protein FlgE [Burkholderia mallei FMH] gi|147752772|gb|EDK59838.1| flagellar hook protein FlgE [Burkholderia mallei JHU] gi|148028946|gb|EDK86878.1| flagellar hook protein FlgE [Burkholderia mallei 2002721280] gi|157805870|gb|EDO83040.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 406e] gi|157935750|gb|EDO91420.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pasteur 52237] gi|169653096|gb|EDS85789.1| flagellar basal body protein FlaE [Burkholderia pseudomallei S13] gi|184212678|gb|EDU09721.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1655] gi|217391964|gb|EEC31990.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 576] gi|225928144|gb|EEH24180.1| flagellar basal body protein FlaE [Burkholderia pseudomallei Pakistan 9] gi|238522489|gb|EEP85933.1| flagellar hook protein FlgE [Burkholderia mallei GB8 horse 4] gi|242138983|gb|EES25385.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1106b] gi|243062738|gb|EES44924.1| flagellar hook protein FlgE [Burkholderia mallei PRL-20] gi|254218325|gb|EET07709.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 1710a] Length = 413 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ L + +N++N +TVGF+ +FS++ + + Sbjct: 2 GYQQGLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTML 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Sbjct: 62 ASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAANANGVINTAATVPLQAPTTNIAPTATTKITGQF 160 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ + + L + + G V N+ + P G Sbjct: 301 TTFSIGADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQYVESAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ ++I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|323137001|ref|ZP_08072081.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] gi|322397762|gb|EFY00284.1| fagellar hook-basal body protein [Methylocystis sp. ATCC 49242] Length = 417 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN + A L+ +++N++N+ TVG++ F V+ + +Q V++ Sbjct: 8 FNTSIMGMSAQSDALANISENIANSGTVGYKRATTHFLTVLSGFQGS-NQFGGGVSTRSR 66 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYPV 123 Y G+ + TG+ D A+ G+ +F + G LTR G F G LV+A+G Y + Sbjct: 67 YDITGQGALMHTGSSTDMAIRGNGFFVVSDGAGGTFLTRAGSFVPDSSGRLVNAAGYYLM 126 Query: 124 LDMASV 129 A Sbjct: 127 GFPAGP 132 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 32/210 (15%) Query: 43 EVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTR 102 + GA +A+ + GS S G L+F + G A L+ Sbjct: 228 DASGATSGGFPYASGPIATQTLTFNPANGSIAS-GGTLNFTVPGGASVTLDMSN------ 280 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIAT-- 157 + G V++ A+V + G +S G+++ Sbjct: 281 ------------TTQLGAPFVVNNATVNGNAAGAIRQVQISSDGTLSYQLDNGQMVPAYL 328 Query: 158 MGLYSVDMSQ------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 +G+ +V G V P P + G + LE SN + E+ Sbjct: 329 IGIANVAAPTELASYTGNVYTATGASGPISVGAPGKGGFGD-IASATLEASNVDLATELS 387 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 MI + + + T + +L+ + N+ Sbjct: 388 TMIIAQRSYTANTQSFQVASE-ILQVLNNL 416 >gi|296531742|ref|ZP_06894567.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] gi|296267925|gb|EFH13727.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] Length = 506 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 10/161 (6%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + + A +LS +++N++N+ TVG++ + +F +V + ++ V Sbjct: 5 NALRTSTSGLNAQAVKLSGISNNIANSSTVGYKRVDTQFESLVLEGSSSGSYALAGVTPR 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFAL---ESPRGIIL-TRDGRFKVTDDGSLVSAS 118 +VG TG + D A+ G+ + + G L TR G F+ G+LV+++ Sbjct: 65 NRVEISKVGQVQRTGVDTDIAVSGNGFLVVNENSDSTGKYLATRAGSFRPDAFGNLVNSA 124 Query: 119 GKYPV---LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 G Y L +P+ NV ++ +A Sbjct: 125 GFYLQGVKLGADGLPV---GNLGDNNVDSLSTVNVNNISVA 162 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPL 186 E +V + G++ K + I + L + G ++ P Sbjct: 392 ERVSVADDGQVIATFSNGKSRPIYALKLAVFPNANGLNPVSGDAYEMSLAAGAVRLIDPG 451 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T G LE SN + E+ +I + ++S T++ ++ + EA Sbjct: 452 TGAAGTT-NGGALESSNVDIGTELTNLIETQRAYSSNATVVRTADQMLEEATN 503 >gi|218549196|ref|YP_002382987.1| flagellar hook protein FlgE [Escherichia fergusonii ATCC 35469] gi|218356737|emb|CAQ89365.1| flagellar hook protein [Escherichia fergusonii ATCC 35469] Length = 401 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDIAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 A P I Q N+ Sbjct: 117 TGYPAAGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + G + +++ +++ + L + ++G ++ + L Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQASGVALL 343 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|170742312|ref|YP_001770967.1| flagellar basal body FlaE domain-containing protein [Methylobacterium sp. 4-46] gi|168196586|gb|ACA18533.1| flagellar basal body FlaE domain protein [Methylobacterium sp. 4-46] Length = 456 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 12/154 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A L+ ++ N++N T G+R I F++++ ND S VA+ Sbjct: 5 SAMQTAVSGLQAQAFSLNNISGNIANAQTTGYRRIDTTFADLLAEQPNDRQTSGS-VAAS 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----------ILTRDGRFKVTDD 111 ++ + G+ STG + AL G +F + +P + TR G F V D Sbjct: 64 SQFTNTLQGNIASTGITTNMALNGGGFFVVRTPSATSGGQPSFTSQDLYTRRGDFAVDKD 123 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 G LV+ +G Y V + + +G + Sbjct: 124 GYLVNGAGSYLVGQSLDPRTGQATGNGVIRIGNQ 157 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 15/141 (10%) Query: 114 LVSASGKYPVLDMASVPIQIP---------QKDEIFNVGEKGEISQK-----GKVIATMG 159 L +ASG A + V G ++ +A +G Sbjct: 313 LNTASGGLTQYGAAGGQVTTNTLQQNGSASGTLRSLAVTSDGRVTGTYSNGTTATLAQVG 372 Query: 160 LYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 + + + + P+ L+G TV G +E SN ++ E ++I Q Sbjct: 373 IARFNAPDALKAESLGNYAQTVESGGPVSGLAGTTVVGGNVEQSNTDTANEFSKLIITQQ 432 Query: 219 KFNSITTLIDENEKSMLEAIR 239 +++ T ++ ++ M + + Sbjct: 433 AYSANTRVMSTAQQMMSDLVN 453 >gi|148358806|ref|YP_001250013.1| flagellar hook protein FlgE [Legionella pneumophila str. Corby] gi|296106851|ref|YP_003618551.1| flagellar hook protein FlgE [Legionella pneumophila 2300/99 Alcoy] gi|148280579|gb|ABQ54667.1| flagellar hook protein FlgE [Legionella pneumophila str. Corby] gi|295648752|gb|ADG24599.1| flagellar hook protein FlgE [Legionella pneumophila 2300/99 Alcoy] Length = 437 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVASG 62 FN L+ A + L + +N++N+ T+GF+ + +F+++ A + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 + + S G+ ++ LD A+ G +F L I TR G+FK+ ++ +V+A+ + Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKIYTRAGQFKLNNENYIVNANNQRL 122 Query: 123 --VLDMASVPIQIPQKDEIFN 141 +L ++ I D N Sbjct: 123 TGLLTDSNGAITGASGDLRIN 143 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 10/108 (9%) Query: 142 VGEKGEIS---QKGK--VIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT-- 193 + + G I G+ + + L + + N+ + PL G Sbjct: 328 IDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGNTSWAETTSSGQPLVSAPGSGGL 387 Query: 194 --VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V G LE+SN + E+ ++I + F + I + I Sbjct: 388 GLVNSGRLEESNVDLTGELVKLISAQRNFQANAQTIRTGDAITQTIIN 435 >gi|74311638|ref|YP_310057.1| flagellar hook protein FlgE [Shigella sonnei Ss046] gi|157157539|ref|YP_001462310.1| flagellar hook protein FlgE [Escherichia coli E24377A] gi|191168462|ref|ZP_03030250.1| flagellar hook protein FlgE [Escherichia coli B7A] gi|193064513|ref|ZP_03045593.1| flagellar hook protein FlgE [Escherichia coli E22] gi|194438060|ref|ZP_03070153.1| flagellar hook protein FlgE [Escherichia coli 101-1] gi|209918330|ref|YP_002292414.1| flagellar hook protein FlgE [Escherichia coli SE11] gi|218694610|ref|YP_002402277.1| flagellar hook protein FlgE [Escherichia coli 55989] gi|253773900|ref|YP_003036731.1| flagellar hook protein FlgE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161182|ref|YP_003044290.1| flagellar hook protein FlgE [Escherichia coli B str. REL606] gi|256018667|ref|ZP_05432532.1| flagellar hook protein FlgE [Shigella sp. D9] gi|260843316|ref|YP_003221094.1| flagellar hook protein FlgE [Escherichia coli O103:H2 str. 12009] gi|260854559|ref|YP_003228450.1| flagellar hook protein FlgE [Escherichia coli O26:H11 str. 11368] gi|260867439|ref|YP_003233841.1| flagellar hook protein FlgE [Escherichia coli O111:H- str. 11128] gi|293433366|ref|ZP_06661794.1| flagellar hook protein FlgE [Escherichia coli B088] gi|300816778|ref|ZP_07096998.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|300821143|ref|ZP_07101292.1| flagellar hook protein FlgE [Escherichia coli MS 119-7] gi|300902467|ref|ZP_07120449.1| flagellar hook protein FlgE [Escherichia coli MS 84-1] gi|300922602|ref|ZP_07138702.1| flagellar hook protein FlgE [Escherichia coli MS 182-1] gi|300928372|ref|ZP_07143906.1| flagellar hook protein FlgE [Escherichia coli MS 187-1] gi|301304985|ref|ZP_07211087.1| flagellar hook protein FlgE [Escherichia coli MS 124-1] gi|301328554|ref|ZP_07221615.1| flagellar hook protein FlgE [Escherichia coli MS 78-1] gi|309798070|ref|ZP_07692445.1| flagellar hook protein FlgE [Escherichia coli MS 145-7] gi|331667476|ref|ZP_08368340.1| flagellar hook protein FlgE [Escherichia coli TA271] gi|331676867|ref|ZP_08377563.1| flagellar hook protein FlgE [Escherichia coli H591] gi|332279736|ref|ZP_08392149.1| flagellar hook protein FlgE [Shigella sp. D9] gi|73855115|gb|AAZ87822.1| flagellar hook protein [Shigella sonnei Ss046] gi|157079569|gb|ABV19277.1| flagellar hook protein FlgE [Escherichia coli E24377A] gi|190901481|gb|EDV61242.1| flagellar hook protein FlgE [Escherichia coli B7A] gi|192927765|gb|EDV82379.1| flagellar hook protein FlgE [Escherichia coli E22] gi|194422996|gb|EDX38990.1| flagellar hook protein FlgE [Escherichia coli 101-1] gi|209911589|dbj|BAG76663.1| flagellar hook protein FlgE [Escherichia coli SE11] gi|218351342|emb|CAU97048.1| flagellar hook protein [Escherichia coli 55989] gi|253324944|gb|ACT29546.1| flagellar basal body FlaE domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973083|gb|ACT38754.1| flagellar hook protein E [Escherichia coli B str. REL606] gi|253977297|gb|ACT42967.1| flagellar hook protein E [Escherichia coli BL21(DE3)] gi|257753208|dbj|BAI24710.1| flagellar hook protein FlgE [Escherichia coli O26:H11 str. 11368] gi|257758463|dbj|BAI29960.1| flagellar hook protein FlgE [Escherichia coli O103:H2 str. 12009] gi|257763795|dbj|BAI35290.1| flagellar hook protein FlgE [Escherichia coli O111:H- str. 11128] gi|291324185|gb|EFE63607.1| flagellar hook protein FlgE [Escherichia coli B088] gi|300405499|gb|EFJ89037.1| flagellar hook protein FlgE [Escherichia coli MS 84-1] gi|300421079|gb|EFK04390.1| flagellar hook protein FlgE [Escherichia coli MS 182-1] gi|300463630|gb|EFK27123.1| flagellar hook protein FlgE [Escherichia coli MS 187-1] gi|300526442|gb|EFK47511.1| flagellar hook protein FlgE [Escherichia coli MS 119-7] gi|300530552|gb|EFK51614.1| flagellar hook protein FlgE [Escherichia coli MS 107-1] gi|300839703|gb|EFK67463.1| flagellar hook protein FlgE [Escherichia coli MS 124-1] gi|300844946|gb|EFK72706.1| flagellar hook protein FlgE [Escherichia coli MS 78-1] gi|308118353|gb|EFO55615.1| flagellar hook protein FlgE [Escherichia coli MS 145-7] gi|313848602|emb|CAQ31597.2| flagellar hook protein FlgE, subunit of Flagellum [Escherichia coli BL21(DE3)] gi|315253877|gb|EFU33845.1| flagellar hook protein FlgE [Escherichia coli MS 85-1] gi|323156883|gb|EFZ43017.1| flagellar hook protein flgE [Escherichia coli EPECa14] gi|323163758|gb|EFZ49577.1| flagellar hook protein flgE [Escherichia coli E128010] gi|323165584|gb|EFZ51371.1| flagellar hook protein flgE [Shigella sonnei 53G] gi|323175693|gb|EFZ61287.1| flagellar hook protein flgE [Escherichia coli 1180] gi|323185801|gb|EFZ71162.1| flagellar hook protein flgE [Escherichia coli 1357] gi|323947622|gb|EGB43626.1| fagellar hook-basal body protein [Escherichia coli H120] gi|323962675|gb|EGB58253.1| fagellar hook-basal body protein [Escherichia coli H489] gi|323973335|gb|EGB68524.1| fagellar hook-basal body protein [Escherichia coli TA007] gi|324017420|gb|EGB86639.1| flagellar hook protein FlgE [Escherichia coli MS 117-3] gi|324117353|gb|EGC11260.1| fagellar hook-basal body protein [Escherichia coli E1167] gi|331065061|gb|EGI36956.1| flagellar hook protein FlgE [Escherichia coli TA271] gi|331075556|gb|EGI46854.1| flagellar hook protein FlgE [Escherichia coli H591] gi|332102088|gb|EGJ05434.1| flagellar hook protein FlgE [Shigella sp. D9] Length = 401 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|78062976|ref|YP_372884.1| flagellar hook protein FlgE [Burkholderia sp. 383] gi|77970861|gb|ABB12240.1| conserved hypothetical protein [Burkholderia sp. 383] Length = 414 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + GL+ L + +N++N +TVGF+ + F+++ + + Sbjct: 2 GYQQGLSGLAGAANHLDVIGNNIANANTVGFKQGRANFADMYANSVATSTNTQIGIGTRL 61 Query: 64 EYLSKE--VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + ++ G+ ST + LD A+ G+ +F + + +RDG F G++V A + Sbjct: 62 VSVQQQFGQGTINSTKSSLDIAINGNGFFQMSNNGVTTYSRDGVFHRDKSGAIVDAQNRN 121 Query: 122 PV------LDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + +P + N+ + G+ Sbjct: 122 LMGYAAGPGGAINTAATVPLQAPTSNISPQATTKITGQF 160 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ V+ + L + + G + + P G Sbjct: 301 TTFSIGTDGKLTGNYSNGQSAVLGLIALANFNNPNGLENIGGNQYVETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + E+ +I + + + I + + Sbjct: 361 STNHGTLQGSALENSNVDLTTELVNLIKAQRDYQANAQTIKTQQTVDQTLLN 412 >gi|300918678|ref|ZP_07135259.1| flagellar hook protein FlgE [Escherichia coli MS 115-1] gi|300414172|gb|EFJ97482.1| flagellar hook protein FlgE [Escherichia coli MS 115-1] Length = 401 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|187478185|ref|YP_786209.1| flagellar hook protein [Bordetella avium 197N] gi|115422771|emb|CAJ49299.1| flagellar hook protein [Bordetella avium 197N] Length = 406 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 13/163 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A Q L + +N++N+ T+GF++ F++V + + K++ V Sbjct: 2 GFGQGLSGLQAASQNLDVIGNNIANSGTIGFKSGSTSFADVYANSRVGLGVKVAAVNQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEG-DAWFALESP-RGIILTRDGRFKVTDDGSLVSASG-- 119 G+ TG E D A++G +F + I+ TR G F + + + +A G Sbjct: 60 ---RFTAGTVSGTGGEYDIAIDGAKGFFRVTDASDNIVYTRSGEFGIDKNFFITNAMGYR 116 Query: 120 --KYPVLDMAS--VPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 YPV + + VP+Q+PQ + I A + Sbjct: 117 LTGYPVGGIGTNLVPLQVPQANIAPQETNAASIQTNLNANAKI 159 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ + G I + + + T+ L + + G +S I P + Sbjct: 295 ISIEKNGTIMAKYTNGESQAVGTIALANFNNVGGLKPVGDSSWVETGESGQAIMGQPGTN 354 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN E+ MI + + + I ++ + I Sbjct: 355 GLATLFGQ-ALEQSNVEMSQELVNMIVAQRTYQANAQTIKTQDEVLQVLIN 404 >gi|39933722|ref|NP_945998.1| flagellar hook protein FlgE [Rhodopseudomonas palustris CGA009] gi|39647569|emb|CAE26089.1| possible flagellar hook protein FlgE [Rhodopseudomonas palustris CGA009] Length = 421 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A A Q LS ++DN++N+DT G++T FS++V A + V Sbjct: 6 ALSSAISALNAQSQSLSMISDNIANSDTTGYKTTSAMFSQLVTASSSATSYASGGVTVAG 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGII-LTRDGRFKVTDDGSLVSASGK 120 + G +T D A++G +F + ++ G TR+G F + + G LV++ G Sbjct: 66 RANISQQGLLAATSNATDVAIQGSGFFVVSDQTSGGTTSYTRNGAFSIDNAGYLVNS-GY 124 Query: 121 Y 121 Y Sbjct: 125 Y 125 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGF------VRRENSGISPNIPPTPL 186 VG+ G + G+ IA + + + G + + T Sbjct: 307 SSIAVGDDGTVNATYSNGQTIAIYKIAVATFKDPDGLSVNSYGIYSVTAASGDASVQTSG 366 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + +G + LE S ++ + MI Q +++ + +I K I Sbjct: 367 SNGAG-KIYGSELESSTTDTSSQFASMISAQQAYSAASQVITTVNKMFDTLI 417 >gi|86747891|ref|YP_484387.1| flagellar hook protein FlgE [Rhodopseudomonas palustris HaA2] gi|86570919|gb|ABD05476.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 421 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 7/147 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A A L+ ++DN++N+ TVG++T F +V V + Sbjct: 6 ALSSAISALNAQSSALAMISDNIANSSTVGYKTSSASFESLVTNTSGASSYSSGGVTASA 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASGK 120 G ST T + A++G+ +F + + + TR+G F + DG LV+ +G Sbjct: 66 TSNITTQGLLTSTTTATNIAIQGNGFFPVTTSLTGGSTLYTRNGAFTIDSDGYLVN-NGA 124 Query: 121 YPVL---DMASVPIQIPQKDEIFNVGE 144 Y + D I + + + Sbjct: 125 YLLGWRTDTDGNVIGTASEGNLVPIDT 151 Score = 38.9 bits (90), Expect = 0.65, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG 197 VG+ G ++ T+ +Y + ++ E S + T S + G Sbjct: 308 SSVAVGDDGTVNATYSNGETIAIYKIPVATFTASAELEAQSGGLYATTAASGSATLQESG 367 Query: 198 F----------LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 LE S ++ + MI Q +++ + +I K I Sbjct: 368 ANGAGTIYGSELESSTTDTNEQFSSMISAQQAYSAASQVITAVNKMFDTLI 418 >gi|301023263|ref|ZP_07187060.1| flagellar hook protein FlgE [Escherichia coli MS 69-1] gi|300397108|gb|EFJ80646.1| flagellar hook protein FlgE [Escherichia coli MS 69-1] Length = 401 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|126441055|ref|YP_001057322.1| flagellar hook protein FlgE [Burkholderia pseudomallei 668] gi|126220548|gb|ABN84054.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 668] Length = 413 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ L + +N++N +TVGF+ +FS++ + + Sbjct: 2 GYQQGLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTML 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Sbjct: 62 ASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAANANGVINTAATVPLQAPTTNIAPTATTKITGQF 160 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ + + L + + G V N+ + P G Sbjct: 301 TTFSIGADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQYVESAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ ++I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|54294163|ref|YP_126578.1| flagellar hook protein FlgE [Legionella pneumophila str. Lens] gi|53753995|emb|CAH15466.1| Flagellar hook protein FlgE [Legionella pneumophila str. Lens] gi|307609977|emb|CBW99506.1| flagellar hook protein FlgE [Legionella pneumophila 130b] Length = 437 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 4/141 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISFVASG 62 FN L+ A + L + +N++N+ T+GF+ + +F+++ A + + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGGNAVGGGVKLS 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 + + S G+ ++ LD A+ G +F L I TR G+FK+ ++ +V+A+ + Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKIYTRAGQFKLNNENYIVNANNQRL 122 Query: 123 --VLDMASVPIQIPQKDEIFN 141 +L ++ I D N Sbjct: 123 TGLLTDSNGAITGASGDLRIN 143 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 10/108 (9%) Query: 142 VGEKGEIS---QKGK--VIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT-- 193 + + G I G+ + + L + + N+ + PL G Sbjct: 328 IDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGNTSWAETTSSGQPLVSAPGSGGL 387 Query: 194 --VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE+SN + E+ ++I + F + I + I Sbjct: 388 GLINSGRLEESNVDLTGELVKLISAQRNFQANAQTIRTGDAITQTIIN 435 >gi|281178185|dbj|BAI54515.1| flagellar hook protein FlgE [Escherichia coli SE15] Length = 401 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|260597445|ref|YP_003210016.1| flagellar hook protein FlgE [Cronobacter turicensis z3032] gi|260216622|emb|CBA29917.1| Flagellar hook protein flgE [Cronobacter turicensis z3032] Length = 410 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ V F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAASTNLDVIGNNIANSATYGFKSGSVSFADMFAGSKAGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFA-LESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 G +TG +LD A+ + +F L+S G+ +R+G+FK+ + +LV+ G Sbjct: 60 ---DFGDGVTTNTGRKLDVAISQNGFFRLLDSNGGVFYSRNGQFKLDEKSNLVNMQGMQV 116 Query: 123 VL-DMASVPIQIPQKDEIF 140 P + Q + Sbjct: 117 TGYPATGTPPTVQQGADPI 135 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 11/145 (7%) Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMG 159 F + G+ SG +L + P + V E G + ++K +++ + Sbjct: 265 SFSMNLTGTTQQNSGANVLLTSNQNGYK-PGDLVGYQVNEDGSLVGNYSNEKSQLLGQIV 323 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 L + +G + ++ + L +G + G LE SN + E+ MI Sbjct: 324 LANFANPEGLSSQGDNVWSASTASGVALLGSAGTGNFGKLTSGALEASNVDLSKELVNMI 383 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + S I ++ + + Sbjct: 384 VAQRNYQSNAQTIKTQDQILNTLVN 408 >gi|254456854|ref|ZP_05070282.1| conserved domain protein [Campylobacterales bacterium GD 1] gi|207085646|gb|EDZ62930.1| conserved domain protein [Campylobacterales bacterium GD 1] Length = 419 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 8/139 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M +F G++ + + ++ + DN++N TVGFR +F+ + N + Sbjct: 2 MTQAFYTGISGLKSNQGGINIITDNLANISTVGFRGYNTEFASMFEDNLNTTSKNSATSS 61 Query: 56 --ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + V ++++ G + D A+ G+ WF ++ + + TR G F D Sbjct: 62 TIGAGVKLQAATMNRDQGVIQISDKSTDLAIVGNGWFGIQGEKDTMYTRGGNFTFDRDSD 121 Query: 114 LVSASGKYPVLDMASVPIQ 132 L++ G Y VL IQ Sbjct: 122 LITQDGFY-VLGTMGANIQ 139 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 8/93 (8%) Query: 155 IATMGLYSVDMSQGF--------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 + + +Y QG +NSG + E++ G + LE SN Sbjct: 324 VGKIAVYHFRNEQGLDRASGARFFEGKNSGSPLFYQDSSGENIIGTDILNFHLEGSNVQM 383 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + +++ + I ++ M +A++ Sbjct: 384 TTGLTDLIIFQRAYDANSKSITTADQMMQKALQ 416 >gi|197104253|ref|YP_002129630.1| flagellar hook protein FlgE [Phenylobacterium zucineum HLK1] gi|196477673|gb|ACG77201.1| flagellar hook protein FlgE [Phenylobacterium zucineum HLK1] Length = 452 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 71/203 (34%), Gaps = 15/203 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 G++ +A L+ ++DN++N +TV ++ +V F+ VV A V S Sbjct: 1 MLAGVSGLVANSSALAAISDNIANVNTVAYKRNQVNFANVVTAQAVKGKYSAGGVQSVTR 60 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFAL-------ESPRGIILTRDGRFKVTDDGSLVSA 117 + G ++ + D A+ GD +F + TR G F V DG +V+ Sbjct: 61 QFVSQQGLIQASNSTTDLAISGDGFFVVANKGLGLTGADPRSFTRSGAFAVDSDGYMVND 120 Query: 118 SGKY----PVLDMASVPIQIPQK---DEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 +G Y PV + + P + NV G + + D Sbjct: 121 AGLYLQGWPVQADGTFNVN-PSDLSLMQSINVKNLGSAVAPTTELGVTANVNKDGPVSAS 179 Query: 171 RRENSGISPNIPPTPLEDLSGVT 193 G D +G T Sbjct: 180 EATYDGSVAATSMAEYADSAGAT 202 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED-----L 189 +V +G +S + + IA +G+ + + P IP + Sbjct: 340 IDVDPEGVVSAVYDNSQIRKIAKIGVATFPNPDALAAVSGNAYRPTIPAGEMTVKEAGIG 399 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE S + E +I + +++ + +I ++ + E I Sbjct: 400 GAGKISPSSLEASTVDLSAEFTGLIATQKAYSASSKIITTADQMLEELIN 449 >gi|85058011|ref|YP_453713.1| flagellar hook protein FlgE [Sodalis glossinidius str. 'morsitans'] gi|84778531|dbj|BAE73308.1| flagellar hook protein FlgE [Sodalis glossinidius str. 'morsitans'] Length = 404 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 10/153 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F G++ A Q L + +N++N TVGF++ F+++ + +++ V Sbjct: 2 GFAQGVSGLNAAAQALDVIGNNIANAQTVGFKSSSASFADMFSESMIGLGVQLAGVQQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ I+ ++ A+ G +F L G I +R+G F+ G +V+ G Sbjct: 60 ---DFNDGTMIAGAGNINMAIAGSGFFRLADNGGKIYYSRNGEFERNKYGEIVNKQGKYL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 Y I +P V +G + Sbjct: 117 TGYKATGTPLGNITVPDTPMPGAVSTEGSLGDN 149 Score = 65.4 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS----GISPNIPPTPLEDLS 190 ++VG+ GEI +Q+ ++IA + + S + G ++ + P D Sbjct: 293 YSVGDNGEIIASYSNQQTQLIAQVVMASFTNTGGLQPSGDNCWTETGASGAPLIGTSDTG 352 Query: 191 GVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V RG LE SN + E+ +M+ + + S I ++ + + Sbjct: 353 SFGVIRGKMLEASNVDMSNELVKMMTQQRNYQSNAQTIKTQDQLLQTLV 401 >gi|224498764|ref|ZP_03667113.1| flagellar basal body rod protein FlgG [Listeria monocytogenes Finland 1988] Length = 259 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVTRQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK G++ + + + +G S Sbjct: 120 HSDQFGFLRTADGA-NLLSTTGEAIQVGQK-TSIRAEANGDLYNAETSQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ + N T ++ G +E SN + EM Q++ + + Sbjct: 178 ANQADSLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|209773380|gb|ACI85002.1| flagellar hook protein FlgE [Escherichia coli] Length = 401 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|261341494|ref|ZP_05969352.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] gi|288316290|gb|EFC55228.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] Length = 395 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I ++ A+ ++L +++N++N+ TVGF++ + +F+ + Q + + Sbjct: 2 SFDIAISGLNAINEQLGAISNNIANSGTVGFKSGRAEFASLYAE-----GQPLGVGVTNV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + G+ ++ + LD A+ G +F + G TR G + +G+LV+ G Y Sbjct: 57 AQSISKNGTVFASASSLDLAINGQGFFVMRDSSGTTAYTRAGYMQTDSNGNLVNNQGMYL 116 Query: 123 VLDMASVPIQIPQKDEIFNVGE 144 P+ + VG Sbjct: 117 ----QGYPVDANGVIQTGTVGN 134 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 12/105 (11%) Query: 141 NVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVR------RENSGISPNIPPTPLEDL 189 + + G + G+ + + L + G + + + TP L Sbjct: 285 TIDKDGSVYATFSNGERLLQGQVVLANFSNPNGLSSQNGTTWTQTASSGAPLLGTPGTGL 344 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G + LE SN N E+ ++ + + + T +I N+ M Sbjct: 345 LGA-LTSNTLEGSNVNLTDELVGLMTAQRNYQANTKVISTNDSMM 388 >gi|331657138|ref|ZP_08358100.1| flagellar hook protein FlgE [Escherichia coli TA206] gi|331055386|gb|EGI27395.1| flagellar hook protein FlgE [Escherichia coli TA206] Length = 401 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|15801193|ref|NP_287210.1| flagellar hook protein FlgE [Escherichia coli O157:H7 EDL933] gi|15830708|ref|NP_309481.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai] gi|168747148|ref|ZP_02772170.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113] gi|168758631|ref|ZP_02783638.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401] gi|168767735|ref|ZP_02792742.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486] gi|168773921|ref|ZP_02798928.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196] gi|168783606|ref|ZP_02808613.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076] gi|168790011|ref|ZP_02815018.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869] gi|168802021|ref|ZP_02827028.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508] gi|195935466|ref|ZP_03080848.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4024] gi|208809224|ref|ZP_03251561.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206] gi|208814886|ref|ZP_03256065.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045] gi|208822570|ref|ZP_03262889.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042] gi|209395987|ref|YP_002269922.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115] gi|254792458|ref|YP_003077295.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14359] gi|261227019|ref|ZP_05941300.1| flagellar hook protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256253|ref|ZP_05948786.1| flagellar hook protein [Escherichia coli O157:H7 str. FRIK966] gi|291282096|ref|YP_003498914.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|12514614|gb|AAG55822.1|AE005317_11 flagellar biosynthesis, hook protein [Escherichia coli O157:H7 str. EDL933] gi|13360918|dbj|BAB34877.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai] gi|187770405|gb|EDU34249.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196] gi|188018069|gb|EDU56191.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113] gi|188999079|gb|EDU68065.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076] gi|189354568|gb|EDU72987.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401] gi|189363151|gb|EDU81570.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486] gi|189370482|gb|EDU88898.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869] gi|189375951|gb|EDU94367.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508] gi|208729025|gb|EDZ78626.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206] gi|208731534|gb|EDZ80222.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045] gi|208738055|gb|EDZ85738.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042] gi|209157387|gb|ACI34820.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115] gi|209773378|gb|ACI85001.1| flagellar hook protein FlgE [Escherichia coli] gi|209773382|gb|ACI85003.1| flagellar hook protein FlgE [Escherichia coli] gi|209773384|gb|ACI85004.1| flagellar hook protein FlgE [Escherichia coli] gi|209773386|gb|ACI85005.1| flagellar hook protein FlgE [Escherichia coli] gi|254591858|gb|ACT71219.1| flagellar hook protein [Escherichia coli O157:H7 str. TW14359] gi|290761969|gb|ADD55930.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|320189759|gb|EFW64415.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC1212] gi|320637527|gb|EFX07327.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. G5101] gi|320643088|gb|EFX12289.1| flagellar hook protein FlgE [Escherichia coli O157:H- str. 493-89] gi|320648546|gb|EFX17201.1| flagellar hook protein FlgE [Escherichia coli O157:H- str. H 2687] gi|320653860|gb|EFX21934.1| flagellar hook protein FlgE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659340|gb|EFX26909.1| flagellar hook protein FlgE [Escherichia coli O55:H7 str. USDA 5905] gi|320664475|gb|EFX31626.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. LSU-61] gi|326339298|gb|EGD63112.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. 1125] gi|326344741|gb|EGD68489.1| Flagellar hook protein FlgE [Escherichia coli O157:H7 str. 1044] Length = 401 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|194432446|ref|ZP_03064733.1| flagellar hook protein FlgE [Shigella dysenteriae 1012] gi|194419333|gb|EDX35415.1| flagellar hook protein FlgE [Shigella dysenteriae 1012] gi|332092817|gb|EGI97885.1| flagellar hook protein flgE [Shigella dysenteriae 155-74] Length = 401 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 44/117 (37%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G + ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASKGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|47095247|ref|ZP_00232858.1| flagellar basal-body rod protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|254829339|ref|ZP_05234026.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL N3-165] gi|254830327|ref|ZP_05234982.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 10403S] gi|254900082|ref|ZP_05260006.1| flagellar basal body rod protein FlgG [Listeria monocytogenes J0161] gi|254911365|ref|ZP_05261377.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935692|ref|ZP_05267389.1| flagellar basal body rod protein FlgG [Listeria monocytogenes F6900] gi|255026599|ref|ZP_05298585.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J2-003] gi|284801012|ref|YP_003412877.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 08-5578] gi|284994154|ref|YP_003415922.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 08-5923] gi|47016318|gb|EAL07240.1| flagellar basal-body rod protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|258601751|gb|EEW15076.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL N3-165] gi|258608274|gb|EEW20882.1| flagellar basal body rod protein FlgG [Listeria monocytogenes F6900] gi|284056574|gb|ADB67515.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 08-5578] gi|284059621|gb|ADB70560.1| flagellar basal body rod protein FlgG [Listeria monocytogenes 08-5923] gi|293589301|gb|EFF97635.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 259 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVTRQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK G++ + + + +G S Sbjct: 120 HSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEANGDLYNAETSQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ + N T ++ G +E SN + EM Q++ + + Sbjct: 178 ANQADSLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|302382558|ref|YP_003818381.1| fagellar hook-basal body protein [Brevundimonas subvibrioides ATCC 15264] gi|302193186|gb|ADL00758.1| fagellar hook-basal body protein [Brevundimonas subvibrioides ATCC 15264] Length = 478 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 12/171 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ G++ A L+ ++ N++N +TVG++ +FS VV + V Sbjct: 3 INSALLAGVSGLTANSAALAAISQNIANVNTVGYKRTAAEFSTVVNSQSQGAGYSAGGVL 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFA-------LESPRGIILTRDGRFKVTDDGS 113 + + G T + D + G +F L++ + TR G F+V + G Sbjct: 63 ANTRNYIAQGGQLQRTTSSTDLGIAGQGFFVTTEKAEGLDAGDARLFTRAGAFRVDNFGY 122 Query: 114 LVSASGKY----PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 L + +G Y PV +P P G + + + Sbjct: 123 LKNTAGLYLQGWPVNAEGDIP-TDPSDLGKLTSINVGSVGGTAEATTRAQV 172 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 12/115 (10%) Query: 135 QKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQ------GFVRRENSGISPNIPP 183 + E+G ++ + IA + L + + G R + G Sbjct: 361 GNLSNIEIDEEGYVTAIFDNGVTRRIAQVALATFTSADSLTPASGNAYRVSQGSGTFNLK 420 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 TP +G+ LE S + E +I + +++ + +I ++ + E I Sbjct: 421 TPGAGGAGLIGAS-QLEASTVDLSAEFTGLITTQRAYSASSKIITTADEMLAELI 474 >gi|327478809|gb|AEA82119.1| flagellar basal body FlaE domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 396 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L A+ ++L+T+ +N++N+ TVGF++ + F + Q + G Sbjct: 2 SFNIALTGLSAVNEQLNTIGNNIANSGTVGFKSSRTNFGSLYAET-----QAMGVEVIGT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGK 120 + G+ ST LD A+ G +F + G + TR G F D + ++ G+ Sbjct: 57 TQSISQGGALTSTNRTLDLAISGGGFFVTRASNGDVGYTRAGIFGTDKDSYITNSLGQ 114 Score = 55.0 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 12/104 (11%) Query: 140 FNVGEKGEISQ---KGKVI--ATMGLYSVDMSQGFVR------RENSGISPNIPPTPLED 188 +V + G++ G+ + + L S ++G E + + P Sbjct: 285 MSVEKDGKVYATYSNGERMLQGQVVLASFVNAEGLKNISGTAWTETAASGAAMLGAPGVG 344 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 G T+ G LE SN + ++ ++ + + + T +I N++ Sbjct: 345 QYG-TLASGALESSNVDLTQQLVGLMEGQRNYQANTQVISTNKE 387 >gi|320179224|gb|EFW54182.1| Flagellar hook protein FlgE [Shigella boydii ATCC 9905] Length = 389 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 23/131 (17%) Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVD 164 + +V+ Y P + + + G + +++ +++ + L + Sbjct: 271 ANNIVVTTQNGYK-----------PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFA 319 Query: 165 MSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 ++G ++ + T G T+ G LE SN + E+ MI + Sbjct: 320 NNEGLASEGDNVWSATQSSGVALLGTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQR 378 Query: 219 KFNSITTLIDE 229 + S I Sbjct: 379 NYQSNAQTIKT 389 >gi|313144034|ref|ZP_07806227.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313129065|gb|EFR46682.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 707 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 21/157 (13%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDIDQKISF----- 58 A + L ++N++N +TVGF+ + F +++ I KN + + F Sbjct: 1 MQAHQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFSIGLG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVS 116 V G+ +T + D A+EGD +F + RG TR+G F +G+LV+ Sbjct: 61 VGIDATTKVFSQGNTQNTDVKTDIAIEGDGFFIISPDRGTTHNYTRNGEFLFDANGNLVT 120 Query: 117 ASGKYPVLDMASVPIQIPQKDEI-----FNVGEKGEI 148 +G Y V P++ + + F V G + Sbjct: 121 -TGGYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPV 156 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVTVKRGF----LEDSNANSMYE 209 +A + L + + G + S P+ + + G LE SN + Sbjct: 615 LAQVALANFANNTGLQAEGGNVFSQTGNSGEPMIGAANTGRRGGVSGSKLEMSNVDLSRS 674 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + Q+I + + F + + + +++ + + Sbjct: 675 LTQLIVVQRGFQANSKAVTTSDQILNTLLN 704 >gi|254175270|ref|ZP_04881931.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 10399] gi|160696315|gb|EDP86285.1| flagellar hook protein FlgE [Burkholderia mallei ATCC 10399] Length = 413 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ L + +N++N +TVGF+ +FS++ + + Sbjct: 2 GYQQGLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTML 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G Sbjct: 62 ASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGMFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAANANGVINTAATVPLQAPTTNIAPTATTKITGQF 160 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ + + L + + G V N+ + P G Sbjct: 301 TTFSIGADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQYVESAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ ++I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|82544458|ref|YP_408405.1| flagellar hook protein FlgE [Shigella boydii Sb227] gi|81245869|gb|ABB66577.1| hook protein [Shigella boydii Sb227] gi|320186977|gb|EFW61690.1| Flagellar hook protein FlgE [Shigella flexneri CDC 796-83] gi|332094030|gb|EGI99082.1| flagellar hook protein flgE [Shigella boydii 3594-74] Length = 402 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|331682578|ref|ZP_08383197.1| flagellar hook protein FlgE [Escherichia coli H299] gi|331080209|gb|EGI51388.1| flagellar hook protein FlgE [Escherichia coli H299] Length = 401 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|82777309|ref|YP_403658.1| flagellar hook protein FlgE [Shigella dysenteriae Sd197] gi|309788143|ref|ZP_07682749.1| flagellar hook protein flgE [Shigella dysenteriae 1617] gi|81241457|gb|ABB62167.1| hook protein [Shigella dysenteriae Sd197] gi|308923995|gb|EFP69496.1| flagellar hook protein flgE [Shigella dysenteriae 1617] Length = 402 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|331646334|ref|ZP_08347437.1| flagellar hook protein FlgE [Escherichia coli M605] gi|330910890|gb|EGH39400.1| flagellar hook protein FlgE [Escherichia coli AA86] gi|331045086|gb|EGI17213.1| flagellar hook protein FlgE [Escherichia coli M605] Length = 401 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|293409442|ref|ZP_06653018.1| flgE [Escherichia coli B354] gi|291469910|gb|EFF12394.1| flgE [Escherichia coli B354] Length = 401 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F + G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|315636309|ref|ZP_07891559.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] gi|315479398|gb|EFU70081.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] Length = 583 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ G++ ++ +S ++N++N+ T G + ++ F++++ + +S + Sbjct: 1 MISALWNGVSGISNYDKGISVESNNIANSSTTGHKLDEITFADMLY-TNGGYGKGVSTQS 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 K++ GS STG LD A++G +F + G I TR G FK T DG L + G Sbjct: 60 ISKQF---AQGSINSTGATLDMAIDGKGFFIVSDKAGEIYYTRAGDFKQTKDGWLQTQDG 116 Query: 120 KYPVL 124 + Sbjct: 117 MNVLG 121 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 5/103 (4%) Query: 141 NVGEKGEISQKGK----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVK 195 +V + G + ++ + + QG ++ S + G+ +K Sbjct: 477 SVSDDGFVFVTSGDNKFLVGRVSTAAFRNEQGLEAVGDNKYSATKSSGTAYNADGMNKIK 536 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 LE SN + + ++ + + + + I ++ + AI Sbjct: 537 EKSLERSNVSYSSTLTSLMVYQRAYEASSKSITTSDDFLKTAI 579 >gi|261339376|ref|ZP_05967234.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] gi|288318177|gb|EFC57115.1| flagellar hook protein FlgE [Enterobacter cancerogenus ATCC 35316] Length = 402 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 73/186 (39%), Gaps = 20/186 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F + G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 120 -KYPVLDM--------ASVPIQIPQK--DEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 YPV I IP +I+ A + Sbjct: 117 TGYPVAGTPPTVQTGANPQAISIPTTLMAAKSTTTASQQINLNSTDTAPTKAFDATNPDT 176 Query: 169 FVRREN 174 + ++ Sbjct: 177 YNKKGT 182 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + G + +++ +V+ + L + ++G ++ + L Sbjct: 285 PGDLVSYQINDDGSVVGNYSNEQTQVLGQIVLANFANNEGLKSEGDNVWSATQSSGVALL 344 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGSGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|171320708|ref|ZP_02909721.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] gi|171094035|gb|EDT39133.1| protein of unknown function DUF1078 domain protein [Burkholderia ambifaria MEX-5] Length = 388 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 6/141 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--AIKNDIDQKISF 58 M S IG++ A + L T+ DN++N +T GF++ +F ++ + + S Sbjct: 1 MLDSIYIGMSGLAAYSKGLQTIGDNVANLNTPGFKSSAPRFQDLCDGRPTAREGKRSGSG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV--S 116 VA L+ G + +LD A++GD AL I R G+F + DDG + + Sbjct: 61 VAYAHATLNFRQGELRGSTGQLDLAIDGDGLLALRDGDTIRYARTGQFHIADDGFVTERT 120 Query: 117 ASGKYPVLDMAS--VPIQIPQ 135 + K LD PI + Q Sbjct: 121 SGLKLATLDATGTLAPISLAQ 141 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 9/108 (8%) Query: 139 IFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG-- 191 N+ G++ G++ + L Q VR + P P SG Sbjct: 274 SMNIDGDGQLALRYSNGQIGHAGAVALARFADPQRLVRLGAGLFDASHLPPPRYAKSGDP 333 Query: 192 --VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 ++ G +E SN + E GQ+I + + F + + +I + + +++ Sbjct: 334 LVGQLRSGAVEASNVDLSGEFGQLILIQRGFQAASQVISTSNEMIMQL 381 >gi|331672596|ref|ZP_08373385.1| flagellar hook protein FlgE [Escherichia coli TA280] gi|331070239|gb|EGI41605.1| flagellar hook protein FlgE [Escherichia coli TA280] Length = 401 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|229144365|ref|ZP_04272771.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-ST24] gi|228639152|gb|EEK95576.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-ST24] Length = 437 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNSGNVEYTRKGSFS 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + SG+Y VL PI IP + + Sbjct: 121 VSKDNYVTNTSGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + I+ P ++ Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYIATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|320173529|gb|EFW48725.1| Flagellar hook protein FlgE [Shigella dysenteriae CDC 74-1112] Length = 402 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + G + +++ +++ + L + ++G ++ + L Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 188 DLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFATLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|16802724|ref|NP_464209.1| flagellar basal body rod protein FlgG [Listeria monocytogenes EGD-e] gi|224502013|ref|ZP_03670320.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL R2-561] gi|16410071|emb|CAC98760.1| lmo0682 [Listeria monocytogenes EGD-e] Length = 259 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVTRQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYS 162 G L +A G +L IQ+ QK G++ + + + +G S Sbjct: 120 HSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEANGDLYNAETSQYLGRLGTKFVS 177 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 + + V+ + N T ++ G +E SN + EM Q++ + + Sbjct: 178 ANQADSLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIETSNVDLGIEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|242277989|ref|YP_002990118.1| hypothetical protein Desal_0512 [Desulfovibrio salexigens DSM 2638] gi|242120883|gb|ACS78579.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 529 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 6/132 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 S G++ A Q +S + +N++N +T+GF+ + F + + N Sbjct: 6 SMYNGISGIRAHSQAMSIIGNNLANGNTIGFKGARTSFEDSFYSAVNTGGGIGQVGHGVG 65 Query: 62 -GKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSAS 118 Y + G F + + A+ G +F + P G TR G F G L Sbjct: 66 IASIYGDFKQGPFEPSSEATNVAIGGKGFFTVRHPDTDGTYYTRAGNFIFNKQGVLTDPH 125 Query: 119 GKYPVLDMASVP 130 G Y V P Sbjct: 126 G-YVVQGWKVNP 136 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + V G ++ G+V+ + L + + G R + S P Sbjct: 415 QAVEVDRDGVVTGRYSNGQVLDLYVLTLANFNNQYGLRREGGNLFSSTRDSGPALTGRAG 474 Query: 193 T-----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T + LE SN + EM ++I + F + + I ++ + E I+ Sbjct: 475 TGPLGSIASNKLEQSNVDVGDEMVKLITTQRGFQANSKAITTADQLLGELIQ 526 >gi|218704484|ref|YP_002412003.1| flagellar hook protein FlgE [Escherichia coli UMN026] gi|293404360|ref|ZP_06648354.1| flgE [Escherichia coli FVEC1412] gi|298380140|ref|ZP_06989745.1| flagellar hook protein FlgE [Escherichia coli FVEC1302] gi|300899595|ref|ZP_07117834.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] gi|218431581|emb|CAR12460.1| flagellar hook protein [Escherichia coli UMN026] gi|291428946|gb|EFF01971.1| flgE [Escherichia coli FVEC1412] gi|298279838|gb|EFI21346.1| flagellar hook protein FlgE [Escherichia coli FVEC1302] gi|300356866|gb|EFJ72736.1| flagellar hook protein FlgE [Escherichia coli MS 198-1] Length = 401 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 48/141 (34%), Gaps = 23/141 (16%) Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVD 164 + +V+ Y P + + + G + +++ +++ + L + Sbjct: 271 ANNIVVTTQNGYK-----------PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFA 319 Query: 165 MSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 ++G ++ + T G T+ G LE SN + E+ MI + Sbjct: 320 NNEGLASEGDNVWSATQSSGVALLGTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQR 378 Query: 219 KFNSITTLIDENEKSMLEAIR 239 + S I ++ + + Sbjct: 379 NYQSNAQTIKTQDQILNTLVN 399 >gi|83719411|ref|YP_440801.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] gi|167617585|ref|ZP_02386216.1| flagellar hook protein FlgE [Burkholderia thailandensis Bt4] gi|257140548|ref|ZP_05588810.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] gi|83653236|gb|ABC37299.1| flagellar hook protein FlgE [Burkholderia thailandensis E264] Length = 413 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ L + +N++N +TVGF+ +FS++ + + Sbjct: 2 GYQQGLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTML 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ S+ + L+ A+ G+ +F + + + +RDG F+ +G +V++ G Sbjct: 62 ASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYQADKNGVINPAQTVPLQAPTNNIAPTATTKITGQF 160 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ + + L + + G V N+ + P G Sbjct: 301 TTFSIGNDGKVTGNYSNGQTATLGQIVLANFNNPNGLVNVGNNQYVETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ ++I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|16129039|ref|NP_415594.1| flagellar hook protein [Escherichia coli str. K-12 substr. MG1655] gi|89107922|ref|AP_001702.1| flagellar hook protein [Escherichia coli str. K-12 substr. W3110] gi|170080727|ref|YP_001730047.1| flagellar hook protein [Escherichia coli str. K-12 substr. DH10B] gi|188492271|ref|ZP_02999541.1| flagellar hook protein FlgE [Escherichia coli 53638] gi|238900330|ref|YP_002926126.1| flagellar hook protein [Escherichia coli BW2952] gi|256023226|ref|ZP_05437091.1| flagellar hook protein FlgE [Escherichia sp. 4_1_40B] gi|300950171|ref|ZP_07164116.1| flagellar hook protein FlgE [Escherichia coli MS 116-1] gi|300954384|ref|ZP_07166838.1| flagellar hook protein FlgE [Escherichia coli MS 175-1] gi|301029709|ref|ZP_07192763.1| flagellar hook protein FlgE [Escherichia coli MS 196-1] gi|301644988|ref|ZP_07244954.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|307137711|ref|ZP_07497067.1| flagellar hook protein FlgE [Escherichia coli H736] gi|331641620|ref|ZP_08342755.1| flagellar hook protein FlgE [Escherichia coli H736] gi|2494529|sp|P75937|FLGE_ECOLI RecName: Full=Flagellar hook protein flgE gi|1787316|gb|AAC74160.1| flagellar hook protein [Escherichia coli str. K-12 substr. MG1655] gi|85674830|dbj|BAA35885.2| flagellar hook protein [Escherichia coli str. K12 substr. W3110] gi|169888562|gb|ACB02269.1| flagellar hook protein [Escherichia coli str. K-12 substr. DH10B] gi|188487470|gb|EDU62573.1| flagellar hook protein FlgE [Escherichia coli 53638] gi|238861108|gb|ACR63106.1| flagellar hook protein [Escherichia coli BW2952] gi|260449784|gb|ACX40206.1| flagellar basal body FlaE domain protein [Escherichia coli DH1] gi|299877397|gb|EFI85608.1| flagellar hook protein FlgE [Escherichia coli MS 196-1] gi|300318620|gb|EFJ68404.1| flagellar hook protein FlgE [Escherichia coli MS 175-1] gi|300450518|gb|EFK14138.1| flagellar hook protein FlgE [Escherichia coli MS 116-1] gi|301076717|gb|EFK91523.1| flagellar hook protein FlgE [Escherichia coli MS 146-1] gi|309701348|emb|CBJ00649.1| flagellar hook protein FlgE [Escherichia coli ETEC H10407] gi|315135708|dbj|BAJ42867.1| flagellar hook protein FlgE [Escherichia coli DH1] gi|315618246|gb|EFU98836.1| flagellar hook protein flgE [Escherichia coli 3431] gi|323937816|gb|EGB34080.1| fagellar hook-basal body protein [Escherichia coli E1520] gi|323942545|gb|EGB38712.1| fagellar hook-basal body protein [Escherichia coli E482] gi|331038418|gb|EGI10638.1| flagellar hook protein FlgE [Escherichia coli H736] gi|332342622|gb|AEE55956.1| flagellar hook protein FlgE [Escherichia coli UMNK88] Length = 402 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|331662482|ref|ZP_08363405.1| flagellar hook protein FlgE [Escherichia coli TA143] gi|284920899|emb|CBG33962.1| flagellar hook protein FlgE [Escherichia coli 042] gi|331060904|gb|EGI32868.1| flagellar hook protein FlgE [Escherichia coli TA143] Length = 402 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|313624924|gb|EFR94832.1| flagellar basal body rod protein FlgG [Listeria innocua FSL J1-023] Length = 259 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 22/250 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 IG A + Q + ++N++N T GF+ ++ SEV+ K + Sbjct: 1 MKGLYIGAAGMMNYMQYIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNSPVAKQV 59 Query: 62 GK---------EYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 G +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPEQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVD 164 G L +A G +L IQ+ QK G++ + + + +G V Sbjct: 120 HTDQFGFLRTADGA-NILSSTGEAIQVGQK-TAIRAEANGDLYNAETNQYLGRLGTKFVS 177 Query: 165 MSQ--GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +Q V+ + N T ++ G LE SN + EM Q++ + + Sbjct: 178 ANQVDNLVKDGEGRLHVNGINTMNLPAGQGNIQNGVLETSNVDLGVEMVQLMDNQRMVQA 237 Query: 223 ITTLIDENEK 232 +++ +K Sbjct: 238 SKNVVNMFDK 247 >gi|307310146|ref|ZP_07589796.1| fagellar hook-basal body protein [Escherichia coli W] gi|306909864|gb|EFN40358.1| fagellar hook-basal body protein [Escherichia coli W] gi|315060354|gb|ADT74681.1| flagellar hook protein [Escherichia coli W] gi|320200972|gb|EFW75556.1| Flagellar hook protein FlgE [Escherichia coli EC4100B] gi|323379085|gb|ADX51353.1| fagellar hook-basal body protein [Escherichia coli KO11] Length = 402 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|222032829|emb|CAP75568.1| flagellar hook protein flgE [Escherichia coli LF82] gi|312945638|gb|ADR26465.1| flagellar hook protein FlgE [Escherichia coli O83:H1 str. NRG 857C] Length = 401 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|311280017|ref|YP_003942248.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] gi|308749212|gb|ADO48964.1| fagellar hook-basal body protein [Enterobacter cloacae SCF1] Length = 402 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRALDVAISQNGFFRLVDSNGSVYYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q + Sbjct: 117 TGYPATGTPPTIQQGANPVALN 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +V+ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQVLGQIVLANFANNEGLQSEGDNVWSATKSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G + G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-KLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|323190588|gb|EFZ75860.1| flagellar hook protein flgE [Escherichia coli RN587/1] Length = 401 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDIIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|315296707|gb|EFU56002.1| flagellar hook protein FlgE [Escherichia coli MS 16-3] gi|320196442|gb|EFW71065.1| Flagellar hook protein FlgE [Escherichia coli WV_060327] Length = 401 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|225375330|ref|ZP_03752551.1| hypothetical protein ROSEINA2194_00955 [Roseburia inulinivorans DSM 16841] gi|225212819|gb|EEG95173.1| hypothetical protein ROSEINA2194_00955 [Roseburia inulinivorans DSM 16841] Length = 550 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 18/143 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ + R+ + +N++N +TV F++ V FS+++ ++ + Sbjct: 1 MMRSMYSAVSGLKTHQTRMDVIGNNIANVNTVAFKSSSVTFSDILYQTTSNASGANATTG 60 Query: 61 SG---------------KEYLSKEVGSFISTGTELDFALEGD---AWFALESPRGIILTR 102 +G + G+ +TG D L +F + + + TR Sbjct: 61 TGGVNAKQIGLGTTAAATKVSITSAGASETTGNPFDIRLTDKNSTNFFIVNNGSENVFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLD 125 G F V G+L +S Y V+ Sbjct: 121 SGSFYVDGSGNLCMSSTGYTVMG 143 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 11/111 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---- 190 + G I +++ + + + G + S + + + Sbjct: 437 IFIDTSGRIYGTYDNGNTELLGQIAVAQFSNASGLEKVGESCYRTTLNSGEFDGIGVEIS 496 Query: 191 --GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E MI + F + + +I ++ + E + Sbjct: 497 ADGSSMTTGELEMSNVDLSSEFTSMITTQRGFQANSRVITTSDTLLEELVN 547 >gi|126176156|ref|YP_001052305.1| flagellar hook protein FlgE [Shewanella baltica OS155] gi|304412508|ref|ZP_07394114.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|307307167|ref|ZP_07586905.1| fagellar hook-basal body protein [Shewanella baltica BA175] gi|125999361|gb|ABN63436.1| flagellar basal body FlaE domain protein [Shewanella baltica OS155] gi|304349150|gb|EFM13562.1| fagellar hook-basal body protein [Shewanella baltica OS183] gi|306910406|gb|EFN40837.1| fagellar hook-basal body protein [Shewanella baltica BA175] Length = 395 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GFR + +F+ + + Q Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTSGFRGGRSEFASIY-----NGGQAGGVGVMST 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG 119 + GS TG +LD ++G+ +F L+ G + R G F +G + G Sbjct: 57 SQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGNDGGAMYARAGMFHKDSEGFITDPVG 113 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVTVKRG----FLEDSNANSM 207 ++ + L + G N+ ++ N + +LE SN ++ Sbjct: 302 QLQGQVILANFSNPNGLSAVSNNAWVATNTAGQAITGSPSTGTMGTVTGGYLEGSNVDTT 361 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 EM ++ + + S ++D N +M +A+ N Sbjct: 362 AEMVNLMSAQRNYQSNAKVLDVNS-TMQQALLN 393 >gi|187926954|ref|YP_001893299.1| flagellar basal body FlaE domain protein [Ralstonia pickettii 12J] gi|241665283|ref|YP_002983642.1| flagellar hook protein FlgE [Ralstonia pickettii 12D] gi|187728708|gb|ACD29872.1| flagellar basal body FlaE domain protein [Ralstonia pickettii 12J] gi|240867310|gb|ACS64970.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] Length = 402 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVAS 61 F GL+ A + L + N++N +TVG++ +F +V + +Q V Sbjct: 2 GFQQGLSGLDAASKNLDVIGSNVANANTVGYKKSTAEFGDVYARSLVGASDNQVGQGVEV 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWF-ALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + S G+ TG LD A+ G ++ +++ G + +R+G+F+ +G ++SA+G Sbjct: 62 TRVSQSFTQGNVTITGNPLDIAINGTGFYRMVDTASGQVSYSRNGQFQTDKNGYIISATG 121 Query: 120 K 120 + Sbjct: 122 Q 122 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 10/111 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 ++VG G I+ + + + + + +G + + + P G+ Sbjct: 291 SYSVGTDGTITARYSNGRTATLGQIAMANFKAPEGLQNIGGNQWVETSNSGAPNLGTPGM 350 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ +E SN + E+ MI + + + I + + + Sbjct: 351 GSFGLLQSSAVEQSNVDLSQELVNMIIAQRSYQANAQTIKTQDTILQTLVT 401 >gi|78355345|ref|YP_386794.1| flagella basal body rod domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217750|gb|ABB37099.1| flagella basal body rod domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 501 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 8/125 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV----VGAIKNDIDQKISFV 59 S IG Q + + +N++N +TVGF+ + + ++ V N+ +S Sbjct: 5 SLYIGATGMKTHSQGMQVIGNNLANINTVGFKQSMMLYQDLTSLDVTTGGNNPTVGMSQQ 64 Query: 60 ASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLV 115 G G F + T D A+ G +F + TR G F+ +G LV Sbjct: 65 GMGASVAEVRVLHTAGGFEPSNTVTDLAISGKGFFQVAQGDKTHYTRAGNFRFDLEGYLV 124 Query: 116 SASGK 120 G Sbjct: 125 DPGGY 129 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + +G +S G+V+ + L+ G R + S ++ + T Sbjct: 388 SLAIDSEGVMSGKFSNGQVVDLYQIPLFRFTSEFGLRREGGNHFSATRESGEAQEGTAKT 447 Query: 194 -----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V LE SN ++ E MI + F S + ++ + + +A+ Sbjct: 448 ENFGSVAASTLEMSNVDASREFVNMIITQRGFQSQSKVVTTADTMLQKAL 497 >gi|238796904|ref|ZP_04640408.1| Flagellar basal body FlaE domain protein [Yersinia mollaretii ATCC 43969] gi|238719164|gb|EEQ10976.1| Flagellar basal body FlaE domain protein [Yersinia mollaretii ATCC 43969] Length = 407 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ GL+ A Q L V +N++N+ TVGF++ + F++V + + ++S V Sbjct: 2 GFSQGLSGLNAASQALDVVGNNIANSQTVGFKSGSIAFADVFAGSQVGMGVQVSSVNQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + G S + LD ++G+ +F L + G + +R+G+FK ++G +++ G + Sbjct: 60 ---NFSDGVLGSGASSLDMGIQGNGFFRLTNEAGRVFYSRNGQFKQDENGFIINNQGMFL 116 Query: 123 VL------------DMASVPIQIPQKDEIFNVGEKGEISQK 151 A PIQIP + G +S Sbjct: 117 TGYQASGTPPAIQPGAAVGPIQIPSGQMPARASDGGSLSGN 157 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 13/148 (8%) Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMG 159 F++ DG + + + P + + VG+ G+I + +++ + Sbjct: 263 DFELDMDGM--TQQASDTAMASPTTTGYAPGQMNGYTVGDNGQIIASYSNGQQQLLGQVV 320 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 L + G + ++ P++ ++G + LE SN + EM MI Sbjct: 321 LSNFTNPGGLSSQGDNCWSETPASGQPVDGIAGTGNLGNLFGNRLEASNVDLSKEMVNMI 380 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + S + I + +L+ + N+ Sbjct: 381 VYQRNYQSNSQTIKTQSE-LLQILANLG 407 >gi|118589967|ref|ZP_01547371.1| flagellar basal body FlaE [Stappia aggregata IAM 12614] gi|118437464|gb|EAV44101.1| flagellar basal body FlaE [Stappia aggregata IAM 12614] Length = 424 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 9/188 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A +L TVA+N+ N+ T G++ K +FS +V + V + +Y Sbjct: 9 SGVSGMNAQSSKLGTVAENIMNSSTTGYKRAKSEFSSLVVSQGAGSFNS-GGVEAHTQYE 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLD 125 + G+ T ++LD A++G+ +F + + G LTR G F DG L++ +G Y Sbjct: 68 ITKKGNLSFTTSKLDLAIDGNGFFVVGNEAGESFLTRAGHFVPDGDGYLLNTAGYYL--- 124 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP 185 PI G G I L + S+ F+R S + +P Sbjct: 125 -QGYPITGNTAPTTVANGLGGLERIN---ITQNQLEATPTSEAFLRVNVSEDAAIVPAAD 180 Query: 186 LEDLSGVT 193 L + T Sbjct: 181 LPSANAAT 188 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 31/206 (15%) Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFI-STGTELDFALEGDAWFALESPRGIILTRDG 104 A + + G+ ++ T ++ A+ F L+ + L + Sbjct: 235 AAPGGGFPYTAPALNTQTLTFDVTTGNLTGASATSINIAVPNGGTFDLDLDQSTYL--NA 292 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---ISQKG--KVIATMG 159 F VT+ V A G P + + G + G + I + Sbjct: 293 DFTVTN----VDADGN------------APSAVKNVEFADDGTLFAVYANGDRRAIYKIP 336 Query: 160 LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L +V R + S + E G +K G LEDSN + E+ M Sbjct: 337 LANVPSPDRLSNRSGNVYSTSFDSGDVRVGFAGEGGMGA-IKVGGLEDSNVDLGNELTSM 395 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + + + + + + Sbjct: 396 IESQRTYTANSQVFKAGSDLLEQLVN 421 >gi|157160603|ref|YP_001457921.1| flagellar hook protein FlgE [Escherichia coli HS] gi|170020528|ref|YP_001725482.1| flagellar hook protein FlgE [Escherichia coli ATCC 8739] gi|312971213|ref|ZP_07785391.1| flagellar hook protein flgE [Escherichia coli 1827-70] gi|157066283|gb|ABV05538.1| flagellar hook protein FlgE [Escherichia coli HS] gi|169755456|gb|ACA78155.1| flagellar basal body FlaE domain protein [Escherichia coli ATCC 8739] gi|310336415|gb|EFQ01601.1| flagellar hook protein flgE [Escherichia coli 1827-70] Length = 402 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|238764392|ref|ZP_04625342.1| Flagellar hook protein FlgE [Yersinia kristensenii ATCC 33638] gi|238697418|gb|EEP90185.1| Flagellar hook protein FlgE [Yersinia kristensenii ATCC 33638] Length = 437 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG--- 119 G+ +T LD A+ + +F ++ GI R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFNDGTTTTTNRRLDLAISQNGFFRMQDSTGGIFYARNGQFKLDENRNIVNMQGLNL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP VP+ IPQ G + Sbjct: 117 TGYPATGTPPTVQQGANPVPLSIPQGMIPAKATTSGNMVAN 157 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLED 188 F + G + +Q+ +++ + + + +G N+ I T Sbjct: 326 FQINNDGSVVGTYSNQQTQLLGQIVMVNFANPEGLSSEGNNVWKETLSSGNAILGTAGSG 385 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 386 GFG-TLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 435 >gi|193069470|ref|ZP_03050424.1| flagellar hook protein FlgE [Escherichia coli E110019] gi|192957218|gb|EDV87667.1| flagellar hook protein FlgE [Escherichia coli E110019] gi|323174795|gb|EFZ60410.1| flagellar hook protein flgE [Escherichia coli LT-68] Length = 401 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF+T F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKTGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|331652129|ref|ZP_08353148.1| flagellar hook protein FlgE [Escherichia coli M718] gi|331050407|gb|EGI22465.1| flagellar hook protein FlgE [Escherichia coli M718] Length = 402 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|218689029|ref|YP_002397241.1| flagellar hook protein FlgE [Escherichia coli ED1a] gi|218426593|emb|CAR07421.1| flagellar hook protein [Escherichia coli ED1a] Length = 401 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|182680457|ref|YP_001834603.1| flagellar hook protein FlgE [Beijerinckia indica subsp. indica ATCC 9039] gi|182636340|gb|ACB97114.1| flagellar basal body FlaE domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 415 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A +LS V+DN++N++T G++ +F +V + N V + Sbjct: 5 SALTASVSGMAAQSNKLSAVSDNIANSNTTGYKQADTEFETLVNGL-NKTSYDAGGVKTT 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASGKY 121 Y G ST + D ++G+ +F + G TR G F DG+L + +G Y Sbjct: 64 IRYNISSQGQLTSTSSATDLGIQGNGFFVVTDDSGTKYLTRAGSFTKNADGTLSNTAG-Y 122 Query: 122 PVLDMA 127 ++ Sbjct: 123 KLMGYN 128 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGE---ISQKGKVIATMGL-----YSVDM---SQGFVRRENSGISPNIP 182 P + ++G G + Q G +A + SVD G V N I Sbjct: 297 PSGLKSISIGTDGVLSKVYQNGTTVAAYKIPLATVASVDNLMVGTGNVYEANGDSGSIII 356 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +++ LE SN + ++ MI + + + + + + + E + Sbjct: 357 GDAGTNGLG-SIQSSQLESSNVDLAAQLTDMIVAQRGYEANSKVFETGSTLLTELVN 412 >gi|91210228|ref|YP_540214.1| flagellar hook protein FlgE [Escherichia coli UTI89] gi|117623262|ref|YP_852175.1| flagellar hook protein FlgE [Escherichia coli APEC O1] gi|215486285|ref|YP_002328716.1| flagellar hook protein FlgE [Escherichia coli O127:H6 str. E2348/69] gi|218557958|ref|YP_002390871.1| flagellar hook protein FlgE [Escherichia coli S88] gi|237706938|ref|ZP_04537419.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|312968850|ref|ZP_07783057.1| flagellar hook protein flgE [Escherichia coli 2362-75] gi|91071802|gb|ABE06683.1| flagellar biosynthesis, hook protein [Escherichia coli UTI89] gi|115512386|gb|ABJ00461.1| flagellar biosynthesis, hook protein FlgE [Escherichia coli APEC O1] gi|215264357|emb|CAS08714.1| flagellar hook protein [Escherichia coli O127:H6 str. E2348/69] gi|218364727|emb|CAR02417.1| flagellar hook protein [Escherichia coli S88] gi|226898148|gb|EEH84407.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|294491293|gb|ADE90049.1| flagellar hook protein FlgE [Escherichia coli IHE3034] gi|307627454|gb|ADN71758.1| flagellar hook protein FlgE [Escherichia coli UM146] gi|312286252|gb|EFR14165.1| flagellar hook protein flgE [Escherichia coli 2362-75] gi|315287369|gb|EFU46780.1| flagellar hook protein FlgE [Escherichia coli MS 110-3] gi|323953238|gb|EGB49104.1| fagellar hook-basal body protein [Escherichia coli H252] gi|323957900|gb|EGB53612.1| fagellar hook-basal body protein [Escherichia coli H263] Length = 401 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|110805093|ref|YP_688613.1| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401] gi|110614641|gb|ABF03308.1| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401] Length = 402 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 13/145 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YPV P I Q N+ Sbjct: 117 TGYPV---TGTPPTIQQGANPTNIS 138 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVN 400 >gi|116694219|ref|YP_728430.1| flagellar hook protein FlgE [Ralstonia eutropha H16] gi|113528718|emb|CAJ95065.1| flagellar hook protein [Ralstonia eutropha H16] Length = 408 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 11/135 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F G++ A L + +N++N +TVG++ +F++V K + +++ V Sbjct: 2 GFGQGVSGLNAAASNLDVIGNNIANANTVGYKQSAAQFADVYAGTKIGLGVRVNSV---- 57 Query: 64 EYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG-- 119 S G+ ++G LD A+ G+ +F L SP G + +R+G+F+ +DG + + G Sbjct: 58 -VQSFNQGNIEASGRSLDVAITNGNGFFRLTSPEGAVYYSRNGQFQRQEDGRITNMQGLQ 116 Query: 120 --KYPVLDMASVPIQ 132 YP +Q Sbjct: 117 VTGYPAGVAGGAGVQ 131 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 9/109 (8%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 F+V G I+ K + + + + +G ++ + L ++G Sbjct: 299 FSVNGDGTITGNYSNEQTKPLGQIVMAAFGNVEGLKPEGDNVWSATGASGQALVGVAGGS 358 Query: 193 --TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ +E SN + ++ +I + + + I + M + Sbjct: 359 MGTLRSNAVEASNVDLSGQLVNLIVAQRNYQANAQTIKAQDTVMQTLVN 407 >gi|306518947|ref|ZP_07405294.1| flagellar basal body rod protein FlgG [Clostridium difficile QCD-32g58] Length = 182 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 11/164 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M T F A A + +L +++N++N+D+ G++ I +++S++V + N Sbjct: 1 MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDLVDEVLNRPSYPTNGND 60 Query: 54 -QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 + + E G+ T ++ + A++G+ +F + G TR+G F + Sbjct: 61 ISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIRKDGTYAYTRNGGFNIDGL 120 Query: 112 GSLVSASGKY--PVLDMASVPIQIPQKDEIFNVGEKGEISQKGK 153 G +V +G D V GE+ K Sbjct: 121 GKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELFVDNK 164 >gi|228952133|ref|ZP_04114228.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807665|gb|EEM54189.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 437 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSLTLTSDKMETAIEGNGLFLVGDRNSGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + SG+Y VL PI IP + + Sbjct: 121 VSKDNYVTNTSGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + I+ P ++ Sbjct: 322 ANDYSISDGGFVMMTYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYIATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSAEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|92114098|ref|YP_574026.1| flagellar basal body FlaE [Chromohalobacter salexigens DSM 3043] gi|91797188|gb|ABE59327.1| flagellar basal body FlaE [Chromohalobacter salexigens DSM 3043] Length = 387 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 7/132 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ L+ A +L T+ +N++N+ TVGF++ V+F+++ A + +++ Sbjct: 2 GFSQSLSGVNAASSQLDTIGNNIANSQTVGFKSSSVQFADIF-ANSQGLGTRVAG----- 55 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 + GS +TG LD A+ GD +F + +R+G+ ++ DG +A G + Sbjct: 56 KLQDFGTGSLETTGRGLDLAIAGDGFFQFTQNEQLAYSRNGQLSMSADGYFENAQGA-RL 114 Query: 124 LDMASVPIQIPQ 135 D P+Q+ Q Sbjct: 115 TDQQGEPLQVTQ 126 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP---LEDLSG 191 + E GE+ + + T+G+ + +G + ++ + + +G Sbjct: 276 VEITENGEVLANYSNGNSEAVGTVGMANFRNPEGLEPQGDNLWAATQESGAALLGQAGTG 335 Query: 192 --VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ G LE SN + E+ MI + F + I +LE + N+ Sbjct: 336 QLGSLESGTLEASNVDLTQELVDMIIAQRNFQANNNAIQTQSD-ILETVTNL 386 >gi|299066542|emb|CBJ37732.1| Putative flagellar hook protein (flgE) [Ralstonia solanacearum CMR15] Length = 395 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 9/127 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S I + E+ L ++++ +N +T GF+ ++FS++ Q A Sbjct: 1 MLDSIYIAMTGLHGYEEALRVISNDTTNMNTPGFKGSALQFSDLFYTNSGQSAQGGGHTA 60 Query: 61 SGKEY--------LSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDD 111 S + L+ + G +TG +LD A++G F L++ G TRDG+FK D Sbjct: 61 SQLGFGLNTVGTLLNFKQGQMQTTGNDLDVAVDGQGLFVLKAADGSLRYTRDGQFKFNTD 120 Query: 112 GSLVSAS 118 G+L+S++ Sbjct: 121 GNLISST 127 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 14/152 (9%) Query: 100 LTRDGR----FKVTDDGSLVS-ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQK 151 T G+ + ++ S SG L MAS G + Sbjct: 238 YTPSGQSSMPLTLDFSNNVTSFDSGGQSTLAMASQNGYAAGNLTKTTFDSTGTLVLTYAN 297 Query: 152 GKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNAN 205 G+ + A + L + N+ ++G T+ G +E+SN + Sbjct: 298 GQTVKGAQLALGRFNSPDAVEAVGNNEFKVVNGQAWETGVAGTGAFGTLHSGMVENSNVD 357 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 E ++ + + + + + ++ + E Sbjct: 358 LSQEFSNLVIMQRGYQASSQVVSTANDMLSEL 389 >gi|83576781|gb|ABC23332.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 472 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 N+ ++A A +S +++N++N+ T+G++T F +V + + + V + Sbjct: 21 NVAVSAMNAQSSSVSAISNNLANSSTIGYKTSNASFYSLVTGTGSTSNFTGAGVVASATQ 80 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGI---ILTRDGRFKVTDDGSLVSASGKYP 122 G + T D A++G F + G TR G F DG LV+++ Y Sbjct: 81 NVINQGVIVGTQNVTDLAVDGKGMFIVTDRSGSNELYYTRAGDFYPNADGDLVNSNNYYL 140 Query: 123 VL---DMASVPIQ 132 D VP+ Sbjct: 141 QGYPTDRNGVPLT 153 >gi|114707045|ref|ZP_01439944.1| flagellar hook protein E [Fulvimarina pelagi HTCC2506] gi|114537595|gb|EAU40720.1| flagellar hook protein E [Fulvimarina pelagi HTCC2506] Length = 390 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 8/136 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F ++ A +LS V+DN++N+ T G++ V+FS +V + V S Sbjct: 7 FRTSVSGMNAQSNKLSAVSDNIANSATTGYKRADVEFSSLVINSGGRGNYTSGSVLSQTR 66 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKV-----TDDGSLVSAS 118 Y G +T ++ D A+ GD +F +E G TR G F T + LV+A+ Sbjct: 67 YDISTQGLVTTTSSKTDLAISGDGFFVVEDQNGQPFFTRAGSFVQRTEPDTGETFLVNAA 126 Query: 119 GKYPVLDMASVPIQIP 134 G L + P+Q+P Sbjct: 127 GYK--LTGQNGPVQVP 140 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISP-NIPPTPLEDLSG 191 F + + G + + + + + L + P + P SG Sbjct: 276 SDFTISDDGRVFGILTTGRQIELDRIQLARFQSPDQLDVISGNVFRPSQLSGDPQFGFSG 335 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE+SN + E+ MI + + + + + + + Sbjct: 336 ELGFGDLISGALEESNVDLASELTDMIVTQRSYAANSKTFQTGSEMLDLLVN 387 >gi|291536012|emb|CBL09124.1| fagellar hook-basal body proteins [Roseburia intestinalis M50/1] Length = 551 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 18/148 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ + ++ + +N++N +TV F++ V F +V+ + ++ + Sbjct: 1 MMRSMYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATG 60 Query: 61 SG---------------KEYLSKEVGSFISTGTELDFALEGD---AWFALESPRGIILTR 102 +G G+ +TG D L +F + + + TR Sbjct: 61 TGGVNAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVP 130 G F V G+L S Y V+ P Sbjct: 121 AGSFYVDGAGNLCMTSTGYTVMGWQVDP 148 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 11/111 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---- 190 ++ G I+ + + + + + G + + + + + Sbjct: 438 ISIDNNGLITGIYDNGNKETLGQIAVAQFANASGLEKVGENCYRTTLNSGEFDGIGDEIS 497 Query: 191 --GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E QMI + F + + +I ++ + E + Sbjct: 498 ADGSSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITTSDTLLEELVN 548 >gi|319406994|emb|CBI80631.1| Flagellar hook protein FlgE [Bartonella sp. 1-1C] Length = 402 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLS VADN++N T+G++ V+FS V V Sbjct: 6 MMR---TGVSGMNAQGTRLSGVADNVANAGTIGYKRTDVQFSNYVTP-SGKYAYVPGGVK 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 S + G +TG D + G+ +F + G LTR G F DG L + +G Sbjct: 62 SHIGHDVSIGGPARATGRSGDTMIHGNGFFRVADENGKEFLTRAGSFIRDKDGYLRNTAG 121 Query: 120 KYPVLDMASVPIQI 133 Y +L+ IQI Sbjct: 122 YY-LLNEDGEKIQI 134 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 13/137 (9%) Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQG 168 LV+ G + + ++ D F G+ GEI +QK + I +G+ +V + Sbjct: 265 LVTQKGNLFAFEGEADGMESGAFDG-FTFGKNGEIEVMYSNQKTRTIGYIGVTTVASTDS 323 Query: 169 F------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 V NS P + P + + G T+ G+LEDSN + E+ MI + + + Sbjct: 324 LTFLGGTVFETNSQTGPQMMGRPGDGVFG-TLSSGYLEDSNVDMGDELTDMIEAQRNYTA 382 Query: 223 ITTLIDENEKSMLEAIR 239 + + + M + Sbjct: 383 NSKVFQTGSELMDVIVN 399 >gi|332759635|gb|EGJ89940.1| flagellar hook protein flgE [Shigella flexneri 2747-71] gi|332767683|gb|EGJ97876.1| flagellar hook protein FlgE [Shigella flexneri 2930-71] Length = 402 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 13/145 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YPV P I Q N+ Sbjct: 117 TGYPV---TGTPPTIQQGANPTNIS 138 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGSNSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVN 400 >gi|296445196|ref|ZP_06887156.1| fagellar hook-basal body protein [Methylosinus trichosporium OB3b] gi|296257370|gb|EFH04437.1| fagellar hook-basal body protein [Methylosinus trichosporium OB3b] Length = 413 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 9/199 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN + A L V+ N++N+ TVG++ +FS V+ +++N D V + Sbjct: 7 FNTSVMGMAAQASALGAVSQNIANSGTVGYKDATTQFSTVLSSVQNGSDPA-GGVTAQTG 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPV 123 G+ T + D A++G +F + G +LTR G F+ +G LV+ +G Y + Sbjct: 66 VAVTAQGNTQQTSSTTDLAIQGSGFFVVSDSSGNTLLTRAGSFEPDSEGRLVNKAGYYLM 125 Query: 124 L---DMASVPIQIPQKDEI-FNVGEK-GEISQKGKVIATM--GLYSVDMSQGFVRRENSG 176 D A+ P I + +G S +G + A + G VD S + S Sbjct: 126 GYSADDANSPSDIAGLQTVHVAIGSLIATPSTEGSLTANLQQGADVVDSSALPSTNDASA 185 Query: 177 ISPNIPPTPLEDLSGVTVK 195 + D G +VK Sbjct: 186 TYTSKTSVTAYDNYGNSVK 204 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 19/160 (11%) Query: 92 LESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE---I 148 ++ P G LT + G + G + ++ Q NV G + Sbjct: 262 IDVPNGQTLT------LDLSGM--TQLGSSFSVSDPTINGNAAQAVASVNVDSDGTLNYV 313 Query: 149 SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVT----VKRGFLED 201 G+ + + L +V G + + N T L G ++ LE Sbjct: 314 LTGGQTVPAYKIPLANVSSPSGLQSVSGNAFATNASSGTAYVGLPGTGSFGDIQSKSLES 373 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + ++ MI + + + + + + M + + N+ Sbjct: 374 STVDLATQLSNMIVAQRSYTANSQVFQVASEVM-QVLNNL 412 >gi|281600495|gb|ADA73479.1| Flagellar hook protein FlgE [Shigella flexneri 2002017] gi|332761421|gb|EGJ91705.1| flagellar hook protein flgE [Shigella flexneri K-671] gi|333019459|gb|EGK38742.1| flagellar hook protein flgE [Shigella flexneri K-304] Length = 379 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 13/145 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YPV P I Q N+ Sbjct: 117 TGYPV---TGTPPTIQQGANPTNIS 138 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 32/195 (16%) Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGR-----------FKVTDDGSLVSASGKY 121 F S G D ++ + + T+D + +G+LV + Sbjct: 187 FDSQGNAHDMSVY---FVKTGDNNWQVYTQDSSDPNSIAKTATTLEFNANGTLVDGAMAN 243 Query: 122 PVLDMASVPIQI------PQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFV 170 + A+ + P + + + G + +++ + L + ++G Sbjct: 244 NIATGANNIVATTQNGYKPGDLVSYQINDDGTVVGNNSNEQTQLLGQIVLANFANNEGLA 303 Query: 171 RRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++ + T G T+ G LE SN + E+ MI + + S Sbjct: 304 SEGDNVWSATQSSGVALLGTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYKSNA 362 Query: 225 TLIDENEKSMLEAIR 239 I ++ + + Sbjct: 363 QTIKTQDQILNTRVN 377 >gi|73539450|ref|YP_299817.1| flagellar hook protein FlgE [Ralstonia eutropha JMP134] gi|72122787|gb|AAZ64973.1| Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE [Ralstonia eutropha JMP134] Length = 417 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F G++ A L + +N++N++TVG++ +F++V K + ++ V Sbjct: 2 GFGQGVSGINAAAANLDVIGNNIANSNTVGYKASTAQFADVYAGTKIGLGTTVNSV---- 57 Query: 64 EYLSKEVGSFISTGTELDFAL-EGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 S G+ +T LD A+ G +F L G + +R+G+F TDDG +V+A G Sbjct: 58 -VQSFTQGNIQATNRSLDVAITNGSGFFRLVGTDGSVHFSRNGQFARTDDGRIVNAQG 114 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 19/207 (9%) Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTR---DG- 104 K+ ++ ++ G+ + G+ + A + + SP I LT+ +G Sbjct: 213 KSSSGPTVTGGTDWTMNVTDAAGNVMG-GSPITLAFDSNGKLTSTSPATITLTKTMTNGA 271 Query: 105 ---RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIA 156 K+ G + G + S F + G + +++ +V+ Sbjct: 272 SDLSMKLDLAG--TTQFGSDNDVMSPSQDGYASGALLGFAIEGDGTVRASYSNEQTQVLG 329 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPP----TPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + L S +G + + + + +E SN + E+ Sbjct: 330 QVVLASFGNPEGLKPEGGNTWAATGASGEAIVGAPGGARGQLLSSAVEASNVDLSGELVN 389 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 +I + + + I+ + M + Sbjct: 390 LIVAQRNYQANAKTIETQNQVMNSLMN 416 >gi|241589579|ref|YP_002979604.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] gi|240868291|gb|ACS65950.1| protein of unknown function DUF1078 domain protein [Ralstonia pickettii 12D] Length = 401 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 10/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-----VVGAIKNDIDQKISF 58 F GL+ A + LS++ N++N +TVG++ V+F + +VGA N I Q +S Sbjct: 2 GFQQGLSGLDAASKNLSSIGSNVANVNTVGYKKSTVQFGDVYARSLVGATDNQIGQGVSV 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVS 116 + S G+ TG LD A+ G ++ + S + TR+G+F+ +G ++S Sbjct: 62 TRVSQ---SFTQGNVTVTGNPLDIAINGMGFYRMVDSSSGQVSYTRNGQFQTDKNGFVIS 118 Query: 117 ASGK 120 A+G+ Sbjct: 119 ATGQ 122 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV 192 ++VG G ++ + V + + + +G + + +P G+ Sbjct: 289 SYSVGIDGTVTGQYSNGRSAVFGQIAMANFKAPEGLQNIGGNQWVETANSGSPNLGTPGM 348 Query: 193 T----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ +E SN + E+ MI + + + I + + + Sbjct: 349 GSFGLLRSSAVEQSNVDLSVELVNMIVAQRSYQANAQTIKTEDSLLQTLV 398 >gi|146311246|ref|YP_001176320.1| flagellar hook protein FlgE [Enterobacter sp. 638] gi|145318122|gb|ABP60269.1| flagellar basal body FlaE domain protein [Enterobacter sp. 638] Length = 404 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 11/144 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKIGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F + G + +R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFNDGTTTNTGRGLDVAISQNGFFRMVDANGSVFYSRNGQFKLDENRNIVNMQGLQL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNV 142 YPV IQ + + Sbjct: 117 TGYPVAGTP-PTIQTGANPQAITI 139 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +V+ + L + ++G ++ + Sbjct: 287 PGDLVSYQINDNGTVVGNYSNEQNQVLGQIVLANFANNEGLKSEGDNVWTATQSSGVALL 346 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G ++ G LE SN + E+ MI + + S I ++ + + Sbjct: 347 GTAGTGNFG-SLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 402 >gi|330447903|ref|ZP_08311551.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492094|dbj|GAA06048.1| conserved hypothetical protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 398 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A +L+T+++N++N T GF+ + +FS V N + VA+ Sbjct: 2 SFDIALSGLDATNVQLNTISNNIANVSTSGFKESRTEFSAVY----NGMQAGGVEVAAIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG LD A+ G +F + G + TR G F D ++VS +G Sbjct: 58 QNFDKT-GSITGTGRPLDLAISGSGFFVTKDHTGQTLYTRSGVFGSDKDNNIVSNNG 113 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 7/95 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 ++ + L QG V+ + + P G V G LE SN + Sbjct: 305 QLQGQVMLADFANPQGLVKTNGTSWIQSFSSGAPVNGAPSTGTLGGLVA-GALEGSNVDL 363 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I ++K + Sbjct: 364 TSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 398 >gi|157738165|ref|YP_001490849.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] gi|157700019|gb|ABV68179.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] Length = 723 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G++ + + ++N++N +TVG++ ++ F++ + N I + S+V Sbjct: 1 MIGALWTGVSGLASQTTAIDNESNNVANVNTVGYKASRISFADQIYQ--NQIGKG-SYVQ 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-----GIILTRDGRFKVTDDGSLV 115 ++ GS TG + D AL+GD +F + + TR G ++ D G+L Sbjct: 58 DAEKL--FTQGSMKVTGVDYDVALQGDGFFTVINKNTLGTAETFYTRAGNLRMGDSGTLQ 115 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +A G Y V A I +K+++ + Sbjct: 116 TADG-YEVQGWAMS--SIDEKNDVISTNSNAT 144 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 8/110 (7%) Query: 138 EIFNVGEKG--EISQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPL---EDLS 190 F+V E G I++ G + + + +QG + N+ + + Sbjct: 611 GSFSVDETGLITITEGGVQYAVGQVSIARFTNNQGLLAVGNNNFQATQESGKAIYSTNNN 670 Query: 191 GVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G LE S A+ + ++ + F + I ++ + I Sbjct: 671 NTAGMQGKTLELSEADLSESLVNLMVFQRAFEANAKSITTADEMLTTLIN 720 >gi|30062613|ref|NP_836784.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 2457T] gi|161485924|ref|NP_706995.2| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] gi|30040859|gb|AAP16590.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 2457T] gi|313650473|gb|EFS14880.1| flagellar hook protein flgE [Shigella flexneri 2a str. 2457T] gi|332758235|gb|EGJ88558.1| flagellar hook protein flgE [Shigella flexneri 4343-70] gi|333005591|gb|EGK25109.1| flagellar hook protein flgE [Shigella flexneri K-218] Length = 402 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 13/145 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNTQGLQL 116 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVG 143 YPV P I Q N+ Sbjct: 117 TGYPV---TGTPPTIQQGANPTNIS 138 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNNSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYKSNAQTIKTQDQILNTRVN 400 >gi|327398496|ref|YP_004339365.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] gi|327181125|gb|AEA33306.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] Length = 589 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK------NDIDQ 54 M + + + ++ +N++N +T+G++ + F+ ++ + + Q Sbjct: 1 MIRALYTSSNGLFEQQLGVDSITNNIANVNTIGYKKTRPTFASLLYQTQKLGMPGENPMQ 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-----ILTRDGRFKVT 109 V G+ I+ + D A+EG +F L P + TR G F Sbjct: 61 IGLGVKLQSTDTIMSEGTLITGNKDTDLAIEGKGFFTLLDPSSKDSASYLFTRAGDFSFD 120 Query: 110 DDGSLVSASGKYPVL 124 DG+LV+ +G V Sbjct: 121 ADGNLVNPNGYMVVG 135 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 17/119 (14%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTP------- 185 + V G I G IA + + QG R + Sbjct: 468 QKVFVDRDGNIMGTYSNGNSYSIAKLAISKFMNPQGLKREGKTMFKTTPNADSEDVLSSY 527 Query: 186 -----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + LE SN + +I + F + + + ++ + AI+ Sbjct: 528 GFIGVANEGGRGMILSNHLEASNVDLGEAFVNLIEYQRGFEANSKGVTTADQLLQTAIQ 586 >gi|228958033|ref|ZP_04119769.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801658|gb|EEM48539.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 437 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNSGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + SG+Y VL PI IP + + Sbjct: 121 VSKDNYVTNTSGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + I+ P ++ Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYIATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|315497625|ref|YP_004086429.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] gi|315415637|gb|ADU12278.1| fagellar hook-basal body protein [Asticcacaulis excentricus CB 48] Length = 472 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 10/150 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S G+A A LS +++N++N+ T ++ ++ F +V A V S Sbjct: 6 SMQAGVAGLAANSNALSAISNNIANSTTTAYKRVRTDFQSIVTASSTPTGYNAGGVISTT 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE------SPRGIILTRDGRFKVTDDGSLVSA 117 ++ +G+ ++LD ++G +F + + TRDG F +DG L +A Sbjct: 66 RHMISTLGTLQKASSQLDLGIDGQGFFITTQKSEPGAEDARLFTRDGSFFADEDGYLRNA 125 Query: 118 SGKY----PVLDMASVPIQIPQKDEIFNVG 143 S Y P+ + ++ + Sbjct: 126 SNLYLQGWPITAGGGPTLSAADLSQLRTIN 155 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 10/115 (8%) Query: 135 QKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP---- 185 + + ++G ++ + IA + L + + G + + + P Sbjct: 355 SGLDKVQISKEGLVTAVFKNGSTRDIAQLALATFVNADGLTPVSGNAYTVSNDSGPLTLK 414 Query: 186 LEDLSGVTVKR-GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +SG + G LE S+ + E +I + +++ + I ++ + E + Sbjct: 415 VPGVSGAGLLGVGTLEASDVDLSEEFTNLIVTQRAYSANSRTITTADEMLQELLN 469 >gi|229160717|ref|ZP_04288709.1| Flagellar hook protein flgE [Bacillus cereus R309803] gi|228622732|gb|EEK79566.1| Flagellar hook protein flgE [Bacillus cereus R309803] Length = 407 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + ++ A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSISGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSVGAKGDERYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFK 107 + + V G+ TG + A+EG+ +F + + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQVAMEGNGFFVVGDSKAGNMEFTRKGTFT 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+QIP I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPADPSTGNVDLSGIPGPLQIPMGSAIGGIRTSKGIVGGNIPA 180 Query: 151 KGKVIAT 157 K I Sbjct: 181 DAKHITQ 187 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G V+ G E +N + Sbjct: 313 KAAGQLAVGMFPNEGGLMKTGNGNFTATNTTGILALGVSGQNGAG-KVRGGAQEGANVDL 371 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 372 SVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|30019797|ref|NP_831428.1| flagellar hook protein FlgE [Bacillus cereus ATCC 14579] gi|229043508|ref|ZP_04191218.1| Flagellar hook protein FlgE [Bacillus cereus AH676] gi|229127079|ref|ZP_04256078.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4] gi|229149956|ref|ZP_04278184.1| Flagellar hook protein FlgE [Bacillus cereus m1550] gi|296502353|ref|YP_003664053.1| flagellar hook protein FlgE [Bacillus thuringiensis BMB171] gi|29895342|gb|AAP08629.1| Flagellar hook protein flgE [Bacillus cereus ATCC 14579] gi|228633637|gb|EEK90238.1| Flagellar hook protein FlgE [Bacillus cereus m1550] gi|228656432|gb|EEL12271.1| Flagellar hook protein FlgE [Bacillus cereus BDRD-Cer4] gi|228725886|gb|EEL77133.1| Flagellar hook protein FlgE [Bacillus cereus AH676] gi|296323405|gb|ADH06333.1| flagellar hook protein FlgE [Bacillus thuringiensis BMB171] Length = 437 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNSGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + SG+Y VL PI IP + + Sbjct: 121 VSKDNYVTNTSGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + I+ P ++ Sbjct: 322 ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYIATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|283833630|ref|ZP_06353371.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] gi|291071313|gb|EFE09422.1| flagellar hook protein FlgE [Citrobacter youngae ATCC 29220] Length = 411 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGAASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ +TG LD A+ + +F + G + +R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSRNGQFKLDENRNIVNMQGLQL 116 Query: 120 -KYPV--------LDMASVPIQIPQK 136 YP PI IP Sbjct: 117 TGYPATGTPPTVQQGANPAPITIPNT 142 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + G + +++ +V+ + L + ++G + ++ + Sbjct: 294 PGDLVSYQINNDGTVVGNYSNEQKQVLGQIVLANFANNEGLASQGDNVWAATQSSGVALL 353 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T E G + G LE SN + E+ MI + + S I ++ + + Sbjct: 354 GTAGEGNFG-KLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 409 >gi|330953726|gb|EGH53986.1| flagellar basal body rod protein FlgG [Pseudomonas syringae Cit 7] Length = 113 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------- 53 M + + A + L+T+++N++N T GF++ + +F +++ IK Sbjct: 1 MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS 60 Query: 54 ------QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI 98 Q + V + GS +T LD A+ G +F + P G Sbjct: 61 ELPSGLQLGTGVRIVGTQKNFNAGSLQTTNNPLDLAVNGRGFFQVTQPDGT 111 >gi|212637785|ref|YP_002314310.1| flagellar hook protein FlgE [Shewanella piezotolerans WP3] gi|212559269|gb|ACJ31723.1| Flagellar basal body rod protein FlaE [Shewanella piezotolerans WP3] Length = 402 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N+ TVGFR+ + +FS AI N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFS----AIYNGGQAGGVNVMSTS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK-- 120 + S GS + TG +LD ++GD +F L S G + R G F DG + +G Sbjct: 58 QNFSMG-GSLVYTGRQLDMGIQGDGFFVLSSQDGNTMYARAGMFNQDADGFVTDPAGNRL 116 Query: 121 --YPVLDMAS 128 Y V + Sbjct: 117 QGYSVSGTGN 126 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 9/116 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDL 189 I++ + ++ G+ +G+V+ L + G + N+ + N P+ Sbjct: 291 IRLDESGMLYGTYTNGQEQLQGQVV----LADFNNPNGLIPVSNNAWTATNAAGQPIVGT 346 Query: 190 SGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +V G+LE SN ++ EM ++ + + S ++D N + I Sbjct: 347 PTTGTLGSVASGYLEGSNVDTTAEMVSLMTAQRNYQSNAKVLDANSTMQQALLNAI 402 >gi|91794995|ref|YP_564646.1| flagellar hook protein FlgE [Shewanella denitrificans OS217] gi|91716997|gb|ABE56923.1| flagellar basal body FlaE [Shewanella denitrificans OS217] Length = 402 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ + Q L+T+++N++N+ TVGFR + +F+ + + Q Sbjct: 2 SFNIALSGLQSTTQDLNTISNNIANSSTVGFRGGRSEFAAIY-----NGGQAGGVSVMST 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + GS TG +LD ++GD +F L+ G + R G F G +V G Sbjct: 57 TQNFTKGGSLTYTGRQLDMGIQGDGFFVLKGTDGANMYARAGMFHQDSQGFVVDPVGN 114 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 156 ATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVTVKRG----FLEDSNANSMYEM 210 + L + G N+ I+ N + +LE SN ++ EM Sbjct: 312 GQVALANFSNPNGLKPVSNNAWIASNEAGQAIMGAPSTGTMGTVTGGYLEGSNVDTTAEM 371 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++ + + S ++D N + +I Sbjct: 372 VNLMSAQRNYQSNAKVLDVNSTMQQALLNSI 402 >gi|238758110|ref|ZP_04619290.1| Flagellar hook protein FlgE [Yersinia aldovae ATCC 35236] gi|238703648|gb|EEP96185.1| Flagellar hook protein FlgE [Yersinia aldovae ATCC 35236] Length = 428 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 67/161 (41%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 G+ +T LD A+ + +F ++ G+ R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFNDGTPTTTNRRLDLAISQNGFFRMQDSSGGVYFARNGQFKLDENRNIVNMQGLSL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP VP+ IPQ G + Sbjct: 117 TGYPATGTPPTVQQGANPVPLSIPQDMITAKATTSGNMVAN 157 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPL----EDL 189 F V + G + +Q+ +++ + L + +G + ++ P+ Sbjct: 317 FQVNKDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLASQGDNVWKETQSSGNPILGTAGGG 376 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ MI + + S I ++ + + Sbjct: 377 GFGSLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 426 >gi|308050024|ref|YP_003913590.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] gi|307632214|gb|ADN76516.1| flagellar hook-basal body protein [Ferrimonas balearica DSM 9799] Length = 407 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 9/128 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ + Q L+T+++N++N T GFR + +F A Q + Sbjct: 2 SFNIALSGLRSTSQDLNTISNNIANVSTPGFRGSRTEF-----ASVYAGGQGGGVAVANV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---- 119 G + TG ELD A+ G +F + TR G F DG +V + G Sbjct: 57 SQNFNTGGDVLYTGRELDMAISGSGFFMTNNQGTTTYTRSGMFAQDKDGYVVDSHGGKLQ 116 Query: 120 KYPVLDMA 127 Y V Sbjct: 117 GYQVGPNG 124 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 10/113 (8%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDL 189 I+I ++ V G+ +G+VI L + G + N+ + P+ Sbjct: 296 IRIDDNGMLYGVYTNGQDQLQGQVI----LANFANPNGLQQVGNTAWTATFASGQPVTGA 351 Query: 190 SGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G ++ G +E SN + E+ ++ + + S +I +K + +A+ Sbjct: 352 AGTGTMGSLTAGAIEGSNVDLTGELVNLMTAQRNYQSNAKVISTQDK-LTQAL 403 >gi|167568107|ref|ZP_02361023.1| flagellar hook protein FlgE [Burkholderia oklahomensis EO147] gi|167574225|ref|ZP_02367099.1| flagellar hook protein FlgE [Burkholderia oklahomensis C6786] Length = 413 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 63/159 (39%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ L + +N++N +TVGF+ +F+++ + + Sbjct: 2 GYQQGLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFADMYANSVASAVNNPIGIGTML 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ S+ + L+ A+ G+ +F + + + +RDG F+ +G +V++ G Sbjct: 62 ASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVVTYSRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYAADANGVINSAATVPLQAPTTNIAPTATSKITGQF 160 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 47/145 (32%), Gaps = 12/145 (8%) Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMG 159 + G + G ++ + F++G G+++ + + Sbjct: 270 NLTLDLTG--TTQYGGKNGINNLTQNGFASGVLTTFSIGADGKLTGNYSNGQTSTLGQIV 327 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVT----VKRGFLEDSNANSMYEMGQMI 214 L + + G V N+ + P G T ++ LE+SN + ++ ++I Sbjct: 328 LANFNNPNGLVSVGNNQYVETAASGVPQISAPGSTNHGTLQGSALENSNVDLTSQLVKLI 387 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + I + I Sbjct: 388 TAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|228945356|ref|ZP_04107711.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814328|gb|EEM60594.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 437 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + GS T +++ A+EG+ F + G + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDNYVTTTGGQY-VLGYGVKNGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|229090715|ref|ZP_04221948.1| Flagellar hook protein FlgE [Bacillus cereus Rock3-42] gi|228692657|gb|EEL46383.1| Flagellar hook protein FlgE [Bacillus cereus Rock3-42] Length = 437 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + GS T +++ A+EG+ F + G + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFS 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDSYVTNTGGQY-VLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|218902868|ref|YP_002450702.1| putative flagellar hook protein FlgE [Bacillus cereus AH820] gi|218535884|gb|ACK88282.1| putative flagellar hook protein FlgE [Bacillus cereus AH820] Length = 437 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDNYVTTTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|238785497|ref|ZP_04629480.1| Flagellar hook protein FlgE [Yersinia bercovieri ATCC 43970] gi|238713599|gb|EEQ05628.1| Flagellar hook protein FlgE [Yersinia bercovieri ATCC 43970] Length = 419 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 G+ +T LD A+ + +F ++ GI R+G+FK+ D ++++ G Sbjct: 60 ---DFNDGTATTTNRRLDLAISQNGFFRMQDSSGGIFYARNGQFKLDADRNIINMQGLSL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP +P+ IPQ G + Sbjct: 117 TGYPATGTPPTIQQGANPIPLSIPQDMISAKATTSGSMVAN 157 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPL----EDL 189 F + G + + + +++ + + + +G ++ P+ Sbjct: 308 FQINNDGSVVGTYSNSQTQLLGQIVMANFANPEGLSSEGDNVWKETLASGNPMLGTAGGG 367 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 368 GFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 417 >gi|317047691|ref|YP_004115339.1| flagellar hook-basal body protein [Pantoea sp. At-9b] gi|316949308|gb|ADU68783.1| flagellar hook-basal body protein [Pantoea sp. At-9b] Length = 406 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLSAASSNLDVIGNNIANSATAGFKSSTIAFADLFAGSDVGLGTKVAAV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + G+ +T LD AL G+ +F + G + +R+G+F + ++ +LV+ G Y Sbjct: 58 -IQNFNDGTTTTTSRGLDVALSGNGFFRMTDSSGAVYYSRNGQFTLDENRNLVNTQGLYV 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 + P I + Sbjct: 117 TGYPASGSPATIQTGANPVALS 138 Score = 75.8 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 13/146 (8%) Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMG 159 + GSL +G + P + + + G I+ Q+ +++ + Sbjct: 261 SITLNMQGSLQQNTGT-TTFGNPTQDGYAPGDLTTYTINDDGTITGTYSNQQTQLLGQIV 319 Query: 160 LYSVDMSQGFVRREN------SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 L S +G + S T G ++ G LE SN + E+ M Sbjct: 320 LASFSNPEGLQSEGDNVWSATSSSGQAAIGTAGTGTFG-SLTAGALEASNVDLSQELVNM 378 Query: 214 IHLTQKFNSITTLIDENEKSMLEAIR 239 I + + + I ++ + + Sbjct: 379 IVAQRNYQANAQTIKTQDQILNTLVN 404 >gi|229189850|ref|ZP_04316861.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 10876] gi|228593658|gb|EEK51466.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 10876] Length = 437 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSLTLTSDKMETAIEGKGLFLVGDRNSGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + SG+Y VL PI IP + + Sbjct: 121 VSKDNYVTNTSGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + I+ P ++ Sbjct: 322 ANDYSISDGGFVMMTYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYIATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSAEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|302037613|ref|YP_003797935.1| flagellar hook protein FlgE [Candidatus Nitrospira defluvii] gi|300605677|emb|CBK42010.1| Flagellar hook protein FlgE [Candidatus Nitrospira defluvii] Length = 407 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---GAIKNDIDQKIS 57 + TS + + + + +N++N T GF++ + FS+++ + DQ Sbjct: 3 ILTSMFTAVTGLSSYGNAMGVIGNNIANVGTAGFKSSRATFSDLISSSLGGGSGSDQIGL 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 V + GS +TG D A++G+ ++ + + G +R G+FKV G +V Sbjct: 63 GVFLNDVQTNFSQGSMTTTGNTFDLAIDGNGFYLVRNTSGANFYSRAGQFKVDSLGQVVD 122 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGE 144 +SG A I + Sbjct: 123 SSGALLQGYQADTNGNITSTIGGITLTS 150 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGI------SPNIPPTPLED 188 +V ++G + + + +A + L G V ++ + P + Sbjct: 295 ISVDKEGRVMAQFTNGETRALAQVVLSRFTNPDGLVNVGDNHFLETVESGAALAGAPTIN 354 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V G +E SN + E MI + F + + I +++ + E + Sbjct: 355 GLG-RVLSGTVEQSNVDLGKEFVDMIITQRAFQANSRAITTSDEMLQELVN 404 >gi|52143704|ref|YP_083124.1| flagellar hook protein FlgE [Bacillus cereus E33L] gi|228926789|ref|ZP_04089857.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121305|ref|ZP_04250536.1| Flagellar hook protein FlgE [Bacillus cereus 95/8201] gi|51977173|gb|AAU18723.1| flagellar hook protein [Bacillus cereus E33L] gi|228662150|gb|EEL17759.1| Flagellar hook protein FlgE [Bacillus cereus 95/8201] gi|228832902|gb|EEM78471.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 437 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDNYVTTTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|315636308|ref|ZP_07891558.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] gi|315479397|gb|EFU70080.1| flagellar hook protein FlgE [Arcobacter butzleri JV22] Length = 723 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G++ + + ++N++N +TVG++ ++ F++ + N I + S+V Sbjct: 1 MIGALWTGVSGLASQTTAIDNESNNVANVNTVGYKASRISFADQIYQ--NQIGKG-SYVQ 57 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-----GIILTRDGRFKVTDDGSLV 115 ++ GS TG + D AL+GD +F + + TR G ++ D G+L Sbjct: 58 DAEKL--FTQGSMKVTGVDYDVALQGDGFFTVINKNTLGTAETFYTRAGNLRMGDSGTLQ 115 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 +A G Y V A I +K+++ + Sbjct: 116 TADG-YEVQGWAMS--SIDEKNDVISTNSNAT 144 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 8/110 (7%) Query: 138 EIFNVGEKG--EISQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPL---EDLS 190 F+V E G I++ G + + + +QG + N+ + + Sbjct: 611 GSFSVDETGLITITEGGVQYAVGQVSIARFTNNQGLLAVGNNNFQATQESGKAIYSTNNN 670 Query: 191 GVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G LE S A+ + ++ + F + I ++ + I Sbjct: 671 NTAGMQGKTLELSEADLSESLVNLMVFQRAFEANAKSITTADEMLTTLIN 720 >gi|114569239|ref|YP_755919.1| hypothetical protein Mmar10_0688 [Maricaulis maris MCS10] gi|114339701|gb|ABI64981.1| protein of unknown function DUF1078 domain protein [Maricaulis maris MCS10] Length = 461 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 78/200 (39%), Gaps = 6/200 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ G + ++ L++++DN++N +TVG++ F+ + + + + V Sbjct: 3 INSALLAGASGLISNSNALASISDNIANVNTVGYKRASAVFTPLYDSDSSTKGYSAAGVN 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG------IILTRDGRFKVTDDGSL 114 S E G + + D A+ G +F + + TR GRF +G L Sbjct: 63 SVARLAIGESGLLTAGSSPTDLAISGRGFFVVRDDANVNSSDPVSFTRAGRFTPDTNGYL 122 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRREN 174 + +GKY + +PQ N E +S G + ++ + + + Sbjct: 123 RNDAGKYLSGWPVAADGSVPQNPSDLNALETINLSSIGGAAEATTIMGINANLQQSQAIS 182 Query: 175 SGISPNIPPTPLEDLSGVTV 194 + + ++S TV Sbjct: 183 ADEATYDATASATNMSSGTV 202 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPP-----TPLE 187 +V + G + K + I + + + G + + P Sbjct: 347 SSVDVDDDGFVFAKFNNGIVRKIYQIPVATFVNPDGLEAQSGGTFTVTPESGAYTLNPPG 406 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S + LE SN + E +I + +++ + +I ++ + EAIR Sbjct: 407 LGSSGQIAASTLESSNVDLANEFTSLITTQRAYSASSKIITTADEMLDEAIR 458 >gi|301166803|emb|CBW26380.1| putative flagellar hook protein [Bacteriovorax marinus SJ] Length = 414 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 13/177 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK---NDIDQKISFV 59 + NI L ++L V DN++N T GF+ + +FSE++ + DQ + Sbjct: 5 QNLNITANTSKQLGRKLEMVGDNINNAGTNGFKGSRAEFSEMLNTASMGADGGDQVGAGA 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ + + D A++G FA+ +P G TRDG F+ DG LV++ G Sbjct: 65 IIDASKRDLSQGTLAHSNSATDLAIDGTGLFAVNTPFGQAYTRDGSFRFDKDGYLVTSDG 124 Query: 120 KYPVLDMASV---------PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQ 167 + VL P+Q+ + ++ + ++ + + Sbjct: 125 -HKVLGYNGEEGQESNTVSPLQLSNGSMNASATSNVSMTMNLDAREDIKVFDIQNPR 180 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 51/202 (25%) Query: 77 GTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG---------------KY 121 G +LD A+EGD + G + G LV+ SG + Sbjct: 221 GEDLDPAVEGD----VLLGTGTA-------SFDNKGVLVNDSGLSANVTFKENDEQAINF 269 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEI------------------SQKGKVI--ATMGLY 161 + D Q + + G GK + + + Sbjct: 270 SLTDKGVATTQFGTDTSVSSNTRNGNEAGSVVGLGFDKGGSLTLRYDNGKSVQLGKIAVA 329 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 QG R + N + + ++ +E SN + M+ Sbjct: 330 KFTNEQGLRRVGQNLFVGNQTSGQVSLGKSGEQGRGDIRTNAIEQSNVDITNNFVDMMKT 389 Query: 217 TQKFNSITTLIDENEKSMLEAI 238 + F++ + + + + I Sbjct: 390 QKSFSANSEAMSAIDGLLKNVI 411 >gi|313681187|ref|YP_004058925.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] gi|313154047|gb|ADR32725.1| flagellar hook-basal body protein [Sulfuricurvum kujiense DSM 16994] Length = 445 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 25/205 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G++ A + L +ADN++NT+TVGFR +F+ + ++ Sbjct: 1 MTQGYYTGISGIQANQYGLDVIADNLANTNTVGFRGSSTEFASLFSEKLVSSGSAPTYDE 60 Query: 61 SG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD--- 111 G ++ + GS ++T D A+ G+ WF + S + TR G F + + Sbjct: 61 IGAGTRLQATTMNTQNGSLLNTDRFNDLAINGNGWFGVVSGQDRYFTRAGNFVLDEYQKT 120 Query: 112 --------GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSV 163 G L + G Y + D +N K +++ G T L +V Sbjct: 121 DGAANSSVGRLTTTEGMYV----TGTMLNNFAYDSQYNYSAKSDVTDTGAFKITASLNTV 176 Query: 164 D----MSQGFVRRENSGISPNIPPT 184 QG + P P T Sbjct: 177 PLTDANEQGPIELPTRLAYPTEPTT 201 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 13/114 (11%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRE--------NSGISPNIPPT 184 +++ G I I + +Y QG R NSG Sbjct: 328 NKYSINSDGIIVADFSNGKQSTIGRIAVYHFQNDQGLTRSGSTLFSQSDNSGNPMFWTDA 387 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E ++G T+ G LE+SN + MI + + + + + ++ + +A+ Sbjct: 388 NGEAVTGTTISSGHLENSNVRMEVGLTDMIVMQRAYQANAKTVTTVDEMIQKAL 441 >gi|30261751|ref|NP_844128.1| flagellar hook protein FlgE [Bacillus anthracis str. Ames] gi|47526975|ref|YP_018324.1| flagellar hook protein FlgE [Bacillus anthracis str. 'Ames Ancestor'] gi|49184583|ref|YP_027835.1| flagellar hook protein FlgE [Bacillus anthracis str. Sterne] gi|65319023|ref|ZP_00391982.1| COG1749: Flagellar hook protein FlgE [Bacillus anthracis str. A2012] gi|165869249|ref|ZP_02213908.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0488] gi|167633465|ref|ZP_02391790.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0442] gi|167639152|ref|ZP_02397425.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0193] gi|170686150|ref|ZP_02877372.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0465] gi|170706520|ref|ZP_02896980.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0389] gi|177650602|ref|ZP_02933569.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0174] gi|190566422|ref|ZP_03019340.1| putative flagellar hook protein FlgE [Bacillus anthracis Tsiankovskii-I] gi|227815486|ref|YP_002815495.1| putative flagellar hook protein FlgE [Bacillus anthracis str. CDC 684] gi|229600977|ref|YP_002866149.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0248] gi|254683244|ref|ZP_05147105.1| flagellar hook protein FlgE [Bacillus anthracis str. CNEVA-9066] gi|254723830|ref|ZP_05185616.1| flagellar hook protein FlgE [Bacillus anthracis str. A1055] gi|254734597|ref|ZP_05192309.1| flagellar hook protein FlgE [Bacillus anthracis str. Western North America USA6153] gi|254741006|ref|ZP_05198694.1| flagellar hook protein FlgE [Bacillus anthracis str. Kruger B] gi|254755249|ref|ZP_05207283.1| flagellar hook protein FlgE [Bacillus anthracis str. Vollum] gi|254759785|ref|ZP_05211809.1| flagellar hook protein FlgE [Bacillus anthracis str. Australia 94] gi|30255979|gb|AAP25614.1| putative flagellar hook protein FlgE [Bacillus anthracis str. Ames] gi|47502123|gb|AAT30799.1| putative flagellar hook protein FlgE [Bacillus anthracis str. 'Ames Ancestor'] gi|49178510|gb|AAT53886.1| flagellar hook protein FlgE, putative [Bacillus anthracis str. Sterne] gi|164714689|gb|EDR20207.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0488] gi|167512942|gb|EDR88315.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0193] gi|167531503|gb|EDR94181.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0442] gi|170128618|gb|EDS97485.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0389] gi|170669847|gb|EDT20588.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0465] gi|172083746|gb|EDT68806.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0174] gi|190562557|gb|EDV16524.1| putative flagellar hook protein FlgE [Bacillus anthracis Tsiankovskii-I] gi|227006608|gb|ACP16351.1| putative flagellar hook protein FlgE [Bacillus anthracis str. CDC 684] gi|229265385|gb|ACQ47022.1| putative flagellar hook protein FlgE [Bacillus anthracis str. A0248] Length = 437 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDNYVTTTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|90423517|ref|YP_531887.1| hypothetical protein RPC_2013 [Rhodopseudomonas palustris BisB18] gi|90105531|gb|ABD87568.1| protein of unknown function DUF1078-like [Rhodopseudomonas palustris BisB18] Length = 464 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 13/195 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + N ++ A + ++ N++N T GF+ I F+++V + + V + Sbjct: 6 AINTAISGMAAQSYAIGNISGNIANAHTPGFKRIDTSFADLV-SNQGPKRTLAGPVLAEA 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPRGII---LTRDGRFKVTDDGSLVSASG 119 + + G +TG + A+ G +F + + G TR G F V G LV+ +G Sbjct: 65 RFTTSVQGPLTATGVGTNMAINGSGFFTVMQRESGSAQSVYTRRGDFAVDKQGYLVNGTG 124 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 Y +L P+ V G I + +D + + + S Sbjct: 125 GY-LLGNNLDPV-------SGRVTSSGLIKIANTTLPGRQTTRIDYAANLPKVPTTTASV 176 Query: 180 NIPPTPLEDLSGVTV 194 +P S V + Sbjct: 177 GGDSSPYTVASAVVI 191 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRR-ENSGISPNIPPTPLEDLSG 191 + +V G I ++ +AT G+ + G + PL L+G Sbjct: 354 KSLSVSGDGTIVGSFSNEMTASVATAGVVNFMNPNGLRPTSGGNYEQSRDSGAPLAGLNG 413 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T+ G +E SN++ + +++ Q +++ ++ + M + + + Sbjct: 414 GTIVGGNIEGSNSDVAGQFSKLVATQQAYSANVKVMTTANQMMADLLNAV 463 >gi|254457547|ref|ZP_05070975.1| flagellar hook protein FlgE [Campylobacterales bacterium GD 1] gi|207086339|gb|EDZ63623.1| flagellar hook protein FlgE [Campylobacterales bacterium GD 1] Length = 705 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 16/134 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G++ + + + ++N++N +T GF+ + FS+++ Sbjct: 1 MLKSLFSGVSGLQSHQVAMDVESNNIANVNTTGFKYSRANFSDLLAQTKAIATAPQGALG 60 Query: 49 -KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGR 105 KN + + S + GS ++ D A++GD ++ + G TR G Sbjct: 61 GKNPVQVGLGSTISSMTRI-FSQGSVQNSDKNTDVAIQGDGFYIVSPDGGNTYKYTRAGD 119 Query: 106 FKVTDDGSLVSASG 119 FK G+ V +G Sbjct: 120 FKFDAGGNFVDNNG 133 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI---SQKGK--VIATMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSGVT 193 + + G + G+ +A +G+ ++G V N I P+ + Sbjct: 593 IRIDQSGTLVGSFSNGRSFGLAQIGMAKFTNNEGLSVEGGNIFIQTANSGDPIIGTAATA 652 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++ LE SN + + Q+I + + F + I +++ + I Sbjct: 653 GRGFIQAAALEASNVDLSRALTQLIIIQRGFQANGKTITTSDQLLQTLI 701 >gi|242238969|ref|YP_002987150.1| flagellar hook protein FlgE [Dickeya dadantii Ech703] gi|242131026|gb|ACS85328.1| flagellar basal body FlaE domain protein [Dickeya dadantii Ech703] Length = 399 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N++T GF++ V F+++ + K++ V Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSETTGFKSASVSFADIYADSAVGLGVKVASVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + G+ ST D A+ +F + G + TR+G F + D +LV+ +G Y Sbjct: 60 ---NFTDGTVESTDVGTDVAISKTGFFRVTDDSGSVYYTRNGEFTLDSDRNLVTKTGYYV 116 Query: 123 VL--DMASVP-IQIPQKDEIFNVGEKG 146 + P I + + N+ G Sbjct: 117 TGYAATGTPPSIASGSQPTVLNISSSG 143 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRREN------SGISPNIPPTPL 186 + + + G I+ + +++ + L S QG + + S + T Sbjct: 286 TSYTINDDGTITGTYSNSQTQLLGQIVLASFSNPQGLSSQGDNVWSETSASGQALLGTAG 345 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G T+ G LE SN + E+ MI + + S I + + + Sbjct: 346 TGVFG-TLTSGALESSNVDISQELVNMIVAQRNYQSNAQTIKTQDAILNTLVN 397 >gi|228914332|ref|ZP_04077947.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845326|gb|EEM90362.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 437 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + GS T +++ A+EG+ F + G + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFS 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDSYVTNTGGQY-VLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGVGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|196044997|ref|ZP_03112230.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB108] gi|300117326|ref|ZP_07055116.1| flagellar hook protein FlgE [Bacillus cereus SJ1] gi|196023999|gb|EDX62673.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB108] gi|298725161|gb|EFI65813.1| flagellar hook protein FlgE [Bacillus cereus SJ1] Length = 437 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDNYVTTTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|52841451|ref|YP_095250.1| flagellar hook protein FlgE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628562|gb|AAU27303.1| flagellar hook protein FlgE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 437 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 4/141 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--ISFVASG 62 FN L+ A + L + +N++N+ T+GF+ + +F+++ + V Sbjct: 3 FNTALSGIQASTRDLEVIGNNIANSATIGFKGSRAEFADIYSSSAYGSGSNAVGGGVKLS 62 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 + + S G+ ++ LD A+ G +F L I TR G+FK+ ++ +V+A+ + Sbjct: 63 RVHQSFATGTLSTSNNTLDLAVNGSGFFILSDQGAKIYTRAGQFKLNNENYIVNANNQRL 122 Query: 123 --VLDMASVPIQIPQKDEIFN 141 +L ++ I D N Sbjct: 123 TGLLTDSNGAITGASGDLRIN 143 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 10/108 (9%) Query: 142 VGEKGEIS---QKGK--VIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLSGVT-- 193 + + G I G+ + + L + + N S PL G Sbjct: 328 IDDSGMIYGRYTNGQSLAMGQIQLANFADPESLQNIGNTSWAETTASGQPLISAPGSGGL 387 Query: 194 --VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE+SN + E+ ++I+ + F + I + I Sbjct: 388 GLINSGRLEESNVDLTGELVKLINAQRNFQANAQTIRTGDAITQTIIN 435 >gi|157738166|ref|YP_001490850.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] gi|157700020|gb|ABV68180.1| flagellar hook protein FlgE [Arcobacter butzleri RM4018] Length = 583 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M ++ G++ ++ +S ++N++N+ T G + ++ F++++ + + +S + Sbjct: 1 MISALWNGVSGISNYDKGISVESNNIANSSTTGHKLDEITFADMLY-TNSGYGKGVSTQS 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 K++ GS S+G LD A++G +F + G I TR G F+ T DG L + G Sbjct: 60 ISKQF---AQGSINSSGGTLDMAIDGKGFFIVSDKAGEIYYTRAGDFQQTKDGWLQTQDG 116 Query: 120 KYPVL 124 + Sbjct: 117 MNVLG 121 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 5/103 (4%) Query: 141 NVGEKGEISQKGK----VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV-TVK 195 +V + G + ++ + + QG ++ S + G+ +K Sbjct: 477 SVSDDGFVFVTSGDNKFLVGRVSTAAFRNEQGLEAVGDNKYSATKSSGTAYNADGMNKIK 536 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 LE SN + + ++ + + + + I ++ + AI Sbjct: 537 EKSLERSNVSYSSTLTSLMVYQRAYEASSKSITTSDDFLKTAI 579 >gi|46203395|ref|ZP_00051590.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 293 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 6/131 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A R+STVA+N+ N +T G++ +FS ++ + V + Sbjct: 9 TGVSGMNAQSNRISTVAENIQNANTTGYKRTSAEFSSLLLDSGDVGTYNSGAVETTLRRS 68 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-DDGSLVSASG----K 120 E G ST ++ D A++G+ +F + G LTR G F V G+LV+A G Sbjct: 69 IGERGPISSTNSDKDLAIQGNGFFVVRDESGAPFLTRAGNFVVDGKSGNLVNAGGFTLLG 128 Query: 121 YPVLDMASVPI 131 Y + + A P+ Sbjct: 129 YSLANGAPNPV 139 >gi|167835111|ref|ZP_02461994.1| flagellar hook protein FlgE [Burkholderia thailandensis MSMB43] Length = 413 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ L + +N++N +TVGF+ +FS++ + + Sbjct: 2 GYQQGLSGLAGASSNLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTML 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ S+ + L+ A+ G+ +F + + + +RDG F+ +G +V++ G Sbjct: 62 ASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQG 119 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F +G G+++ + + L + + G V N+ + P G Sbjct: 301 TTFTIGNDGKLTGNYSNGQTATLGQIVLANFNNPNGLVNIGNNQYVETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQAVDQTLIN 412 >gi|167579488|ref|ZP_02372362.1| flagellar hook protein FlgE [Burkholderia thailandensis TXDOH] Length = 413 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 8/159 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 + GL+ L + +N++N +TVGF+ +FS++ + + Sbjct: 2 GYQQGLSGLAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTML 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ S+ + L+ A+ G+ +F + + + +RDG F+ +G +V++ G Sbjct: 62 ASVQQQFSQGTITSSTSSLNVAINGNGFFQMSNNGVLTYSRDGTFQRDKNGYIVNSQGLN 121 Query: 122 PVL------DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + + +P + N+ G+ Sbjct: 122 LMGYQADKNGVINTAQTVPLQAPTNNIAPTATTKISGQF 160 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ + + L + + G V N+ + P G Sbjct: 301 TTFSIGNDGKVTGNYSNGQTATLGQIVLANFNNPNGLVNVGNNQYVETAASGVPQISAPG 360 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ +I + + + I + I Sbjct: 361 STNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLIN 412 >gi|228933037|ref|ZP_04095900.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826638|gb|EEM72409.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 437 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + GS T +++ A+EG+ F + G + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFS 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDSYVTNTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|228984838|ref|ZP_04145009.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155324|ref|ZP_04283435.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 4342] gi|228628249|gb|EEK84965.1| Flagellar hook protein FlgE [Bacillus cereus ATCC 4342] gi|228774890|gb|EEM23285.1| Flagellar hook protein FlgE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 437 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + GS T +++ A+EG+ F + G + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDSYVTNTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAIATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|118477189|ref|YP_894340.1| flagellar hook protein FlgE [Bacillus thuringiensis str. Al Hakam] gi|225863612|ref|YP_002748990.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB102] gi|229183945|ref|ZP_04311161.1| Flagellar hook protein FlgE [Bacillus cereus BGSC 6E1] gi|118416414|gb|ABK84833.1| flagellar hook protein [Bacillus thuringiensis str. Al Hakam] gi|225790448|gb|ACO30665.1| putative flagellar hook protein FlgE [Bacillus cereus 03BB102] gi|228599597|gb|EEK57201.1| Flagellar hook protein FlgE [Bacillus cereus BGSC 6E1] Length = 437 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + GS T +++ A+EG+ F + G + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNGGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDSYVTNTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|90418365|ref|ZP_01226277.1| putative flagellar hook protein FlgE [Aurantimonas manganoxydans SI85-9A1] gi|90338037|gb|EAS51688.1| putative flagellar hook protein FlgE [Aurantimonas manganoxydans SI85-9A1] Length = 388 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F ++ A RLSTV++N++N+ T G++ +F+ +V A S V + Sbjct: 7 FRTSVSGMNAQANRLSTVSENIANSSTNGYKRNSTEFASLVLAQGGGEYNPGS-VKTQVR 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-------DDGSLVS 116 + GS +T + D A++GD +F ++ G TR G F + LV+ Sbjct: 66 QSISQQGSIAATSSGSDLAIQGDGFFVVQDTAGREFYTRAGSFVQRTETIGGKETTFLVN 125 Query: 117 ASGKY----PVLDMASVPIQIPQKDEI 139 +G PV A+ PI++P + Sbjct: 126 TAGYRLTGSPVGGGAAAPIELPVGAIV 152 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 15/127 (11%) Query: 124 LDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGIS 178 L P P F E G +S G++I M L + S Sbjct: 263 LVTNGNP---PGSFTGFAFAENGTLSGVMNTGQLIPLYEMSLARFASPDQLQASAGNVYS 319 Query: 179 PNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 P + G V G LE SN + E+ MI + +++ + + + Sbjct: 320 ATASSGVAALGGPGTNGYGSLVSSG-LEQSNVDLASELTSMIESQRSYSANSKVFQTGAE 378 Query: 233 SMLEAIR 239 + + Sbjct: 379 ILDVLVN 385 >gi|333004885|gb|EGK24405.1| flagellar hook protein flgE [Shigella flexneri VA-6] Length = 399 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +L++ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLLNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 282 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 341 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 342 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTRVN 397 >gi|23008562|ref|ZP_00049955.1| COG4786: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 126 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------- 53 + I A + L +A+N++N +T GF+ + +F++++ + Sbjct: 1 MRALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGVPNQAGQE 60 Query: 54 --QKISFVASGKEYLS----KEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRF 106 + + + G + GS +TG +LD A+ G +F + SP G + TR G F Sbjct: 61 AVPEGAMLGLGVRAAAIRNLHRQGSLANTGNQLDLAVNGRGYFQITSPAGEVNYTRAGSF 120 Query: 107 KVTDD 111 ++ Sbjct: 121 NKNNN 125 >gi|240145497|ref|ZP_04744098.1| flagellar basal body and hook protein [Roseburia intestinalis L1-82] gi|257202312|gb|EEV00597.1| flagellar basal body and hook protein [Roseburia intestinalis L1-82] Length = 551 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 18/148 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S ++ + ++ + +N++N +TV F++ V F +V+ + ++ + Sbjct: 1 MMRSMYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATG 60 Query: 61 SG---------------KEYLSKEVGSFISTGTELDFALEGD---AWFALESPRGIILTR 102 +G G+ +TG D L +F + + + TR Sbjct: 61 TGGVNAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVP 130 G F V G+L S Y V+ P Sbjct: 121 AGSFYVDGAGNLCMTSTGYTVMGWQVDP 148 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 11/111 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---- 190 ++ G I+ + + + + + G + + + + + Sbjct: 438 ISIDNNGLITGIYDNGNKETLGQIAVAQFANASGLEKVGENCYRTTLNSGEFDGIGDEIS 497 Query: 191 --GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E QMI + F + + +I ++ + E + Sbjct: 498 ADGSSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITTSDTLLEELVN 548 >gi|167626155|ref|YP_001676449.1| flagellar hook protein FlgE [Shewanella halifaxensis HAW-EB4] gi|167356177|gb|ABZ78790.1| flagellar basal body FlaE domain protein [Shewanella halifaxensis HAW-EB4] Length = 402 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N+ TVGFR+ + +FS + + Q Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFSAIY-----NGGQAGGVNVMNT 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 GS TG +LD ++G+ +F L G R G F DG + +G Sbjct: 57 SQNFSAGGSLTYTGRQLDMGIQGEGFFMLSGQDGSTTYARAGMFNQNADGFITDPAGSRL 116 Query: 120 -KYPVLDMAS 128 YPV + Sbjct: 117 QGYPVGATGN 126 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 7/95 (7%) Query: 153 KVIATMGLYSVDMSQGFV------RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 ++ + L + G + I TP G ++ G+LE SN + Sbjct: 309 QLQGQVVLADFNNPNGLEPVSNNAWAATNAAGQPIIGTPTTGTLG-SIAGGYLEGSNVDQ 367 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ + + S ++D N + I Sbjct: 368 TAEMVNLMTAQRNYQSNAKVLDTNSTMQQALLNAI 402 >gi|209695762|ref|YP_002263692.1| flagellar hook protein FlgE [Aliivibrio salmonicida LFI1238] gi|208009715|emb|CAQ80019.1| flagellar hook protein FlgE [Aliivibrio salmonicida LFI1238] Length = 432 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 6/125 (4%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGK 63 + L+ A ++ L+T ++N++N +T GF+ + +F +V + N + K Sbjct: 3 YVALSGLSAAQKDLNTTSNNLANANTFGFKESRAEFGDVYSSSLFSNTKTTTGGGAQTTK 62 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE----SPRGIILTRDGRFKVTDDGSLVSASG 119 GS I T +D + G +F + P L+R+G F + + + +++ Sbjct: 63 IAQQFHEGSSIYTNNPMDLRISGQGFFGVAKDRLQPGTNELSRNGAFHLDKENYVTTSND 122 Query: 120 KYPVL 124 ++ + Sbjct: 123 EFLLG 127 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----E 187 ++ + G I GK + + + V QG + + S Sbjct: 319 SKVDIDKSGNIVGSYSNGKDVTLGRVAMVRVTNQQGLAQNGGTQWSTTQASGAAIWGEAN 378 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S ++ G LE SN + E+ +I + F + + +D + + ++ Sbjct: 379 QGSFGDIQSGTLEQSNIDMTQELVDLISAQRNFQANSRALDVHNQLQQNILQ 430 >gi|196033295|ref|ZP_03100707.1| putative flagellar hook protein FlgE [Bacillus cereus W] gi|195993729|gb|EDX57685.1| putative flagellar hook protein FlgE [Bacillus cereus W] Length = 437 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNVVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFS 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDSYVTNTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|301053291|ref|YP_003791502.1| flagellar hook protein [Bacillus anthracis CI] gi|300375460|gb|ADK04364.1| flagellar hook protein [Bacillus cereus biovar anthracis str. CI] Length = 437 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDNYVTTTGGQY-VLGYGVKTGTQEIDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|292489133|ref|YP_003532020.1| flagellar hook protein FlgE [Erwinia amylovora CFBP1430] gi|292900252|ref|YP_003539621.1| flagellar hook protein [Erwinia amylovora ATCC 49946] gi|291200100|emb|CBJ47226.1| flagellar hook protein [Erwinia amylovora ATCC 49946] gi|291554567|emb|CBA22181.1| Flagellar hook protein flgE [Erwinia amylovora CFBP1430] gi|312173291|emb|CBX81546.1| Flagellar hook protein flgE [Erwinia amylovora ATCC BAA-2158] Length = 410 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 11/148 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ GL+ A L V +N++N+ T GF++ + F+++ + + SG+ Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKSGSIGFADIFAGAQ---GMGVQVAGSGQ 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 + G TG LD + G+ +F L G +R+G+F +G + + + Sbjct: 59 NFKD---GGLTGTGRNLDMGINGNGFFRLMDEAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 123 VLD---MASVP-IQIPQKDEIFNVGEKG 146 + + P IQ + + G Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQIDKTG 143 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 12/112 (10%) Query: 139 IFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLE 187 F +G+ GEI+ ++IA + L + G + N+ +I T Sbjct: 298 NFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNNTWVESPQSGGSIIGTAGS 357 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE+SN + EM MI + + S + I + + + Sbjct: 358 GSFG-SLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVN 408 >gi|186477697|ref|YP_001859167.1| flagellar basal body FlaE domain-containing protein [Burkholderia phymatum STM815] gi|184194156|gb|ACC72121.1| flagellar basal body FlaE domain protein [Burkholderia phymatum STM815] Length = 501 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 20/205 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQKISF 58 + GL+ L + +N++N +TVGF+ +F+++ A+ N I Sbjct: 2 GYQQGLSGLAGASSDLDVIGNNIANANTVGFKQGAAQFADMYANSVATAVNNQIGIGTRM 61 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + + G+ + L A+ G +F + + + +R+G F++ +G + +A Sbjct: 62 SQVEQ---NFSQGTISTDDIALHVAINGSGFFQMSNNGALTYSRNGVFQLDKNGYITNAD 118 Query: 119 GKYPVL----------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQG 168 G + +VP+Q+P + + I+ + A L S Sbjct: 119 GLKLMGYAANANGIINTAGTVPLQVPTANIPPTATK--TITAGLNLNAQDALKLGTPSVT 176 Query: 169 FVRRENSGISPNIPPTPLEDLSGVT 193 F S + + T + Sbjct: 177 FTTSTGSLTNNGVSITDATQGTNAN 201 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--- 189 F VG G I+ + + L + G + N+ Sbjct: 389 TNFTVGTDGIITGNYSNGQTAALGQVALATFANQNGLINLGNNQFQATAASGVAVVAAPG 448 Query: 190 --SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +++ G E+SN + E+ +I + + + I + I Sbjct: 449 STNHGSLQGGATENSNVDLTSELVNLITAQRNYQANAQTIKTQQTVDQTLIN 500 >gi|306814075|ref|ZP_07448248.1| flagellar hook protein FlgE [Escherichia coli NC101] gi|305852712|gb|EFM53160.1| flagellar hook protein FlgE [Escherichia coli NC101] Length = 401 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNVAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|238751762|ref|ZP_04613250.1| Flagellar hook protein FlgE [Yersinia rohdei ATCC 43380] gi|238710033|gb|EEQ02263.1| Flagellar hook protein FlgE [Yersinia rohdei ATCC 43380] Length = 430 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 66/149 (44%), Gaps = 16/149 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF++ V F+++ + + +++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKSSSVSFADMFAGSQAGMGVQVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASG--- 119 G+ +T LD A+ +F ++ GI R+G+FK+ ++ ++++ G Sbjct: 60 ---DFNDGTATTTNRRLDIAISQSGFFRMQDSTGGIYYARNGQFKLDENRNIINMQGLSL 116 Query: 120 -KYPVLDM------ASVPIQIPQKDEIFN 141 YP + PI + +I + Sbjct: 117 TGYPATGTPPTVKQGANPIALSIPQDIIS 145 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 11/145 (7%) Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMG 159 FK+ GS +G V+ + + F +G G + +Q+ +++ + Sbjct: 285 SFKLDVTGSKQQNTGTDSVVAQSQTGYAAGEFTG-FQIGTDGALVGTYSNQQTQLLGQIV 343 Query: 160 LYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMI 214 + + +G ++ +P+ ++G T+ G LE SN + E+ MI Sbjct: 344 MVNFANPEGLSSAGDNVWKETQTSGSPILGIAGSGGFGTLTSGALESSNVDLSAELVNMI 403 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + S I ++ + + Sbjct: 404 VAQRNYQSNAQTIKTQDQILQTLVN 428 >gi|89072315|ref|ZP_01158894.1| flagellar hook protein [Photobacterium sp. SKA34] gi|89051847|gb|EAR57299.1| flagellar hook protein [Photobacterium sp. SKA34] Length = 398 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A +L+T+++N++N T GF+ + +FS V N + VA+ Sbjct: 2 SFDIALSGLDATNIQLNTISNNIANVSTSGFKESRTEFSAVY----NGMQAGGVEVAAIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG LD A+ G +F + G + TR G F D ++VS +G Sbjct: 58 QNFDKT-GSITGTGRPLDLAISGSGFFVTKDLTGQTLYTRSGVFGSDKDNNIVSNNG 113 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 7/95 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 ++ + L QG V+ + + P G V G LE SN + Sbjct: 305 QLQGQVMLADFANPQGLVKTNGTSWIQSFSSGAPVNGAPSTGTLGGLVA-GALEGSNVDL 363 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I ++K + Sbjct: 364 TSELVSLMTAQRNYQANAKTISTSDKLTQSLFNAV 398 >gi|238788315|ref|ZP_04632109.1| Flagellar hook protein FlgE [Yersinia frederiksenii ATCC 33641] gi|238723561|gb|EEQ15207.1| Flagellar hook protein FlgE [Yersinia frederiksenii ATCC 33641] Length = 428 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 G+ +T LD A+ +F ++ G+ R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFNDGTPTTTNRRLDLAISQSGFFRMQDSSGGVYFARNGQFKLDENRNIVNMQGLSL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP VP+ IPQ E G + Sbjct: 117 TGYPATGTPPTVQQGANPVPLSIPQDMIAAKATESGNMVAN 157 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPL----EDL 189 F + G + +Q+ +++ + L + +G ++ P+ Sbjct: 317 FQINNDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLSPEGDNVWKETKSSGNPILGTAGGG 376 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 377 GFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 426 >gi|217327976|ref|ZP_03444058.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14588] gi|217318403|gb|EEC26829.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. TW14588] Length = 372 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ + V+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNQVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 38.5 bits (89), Expect = 0.86, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 12/84 (14%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANS 206 T G T+ G LE SN + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDL 366 >gi|11386807|sp|P57422|FLGE_BUCAI RecName: Full=Flagellar hook protein flgE gi|25403598|pir||E84969 flagellar hook protein flgE [imported] - Buchnera sp. (strain APS) gi|10039011|dbj|BAB13045.1| flagellar hook protein flgE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 405 Score = 108 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 I ++ LA + +++N++N T+G+++ K F ++ V Sbjct: 2 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 61 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G + TG +LD + D +F L +G + TRDG+F + D ++++ G Y Sbjct: 62 NFNNGMLVETGRDLDLGIIKDGFFRLVDSQGHVYYTRDGQFFLDKDQNIINIQGMY 117 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%) Query: 135 QKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 + F++ GEI +QK + I + L + + S + Sbjct: 288 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATAESGEAKTA 347 Query: 190 SGVTVK-RGFL-----EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G L E SN + E+ MI + + S +K + I Sbjct: 348 MKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLIN 403 >gi|110641252|ref|YP_668982.1| flagellar hook protein FlgE [Escherichia coli 536] gi|191172366|ref|ZP_03033907.1| flagellar hook protein FlgE [Escherichia coli F11] gi|300982621|ref|ZP_07176205.1| flagellar hook protein FlgE [Escherichia coli MS 200-1] gi|110342844|gb|ABG69081.1| flagellar hook protein FlgE [Escherichia coli 536] gi|190907250|gb|EDV66848.1| flagellar hook protein FlgE [Escherichia coli F11] gi|300307086|gb|EFJ61606.1| flagellar hook protein FlgE [Escherichia coli MS 200-1] gi|324013350|gb|EGB82569.1| flagellar hook protein FlgE [Escherichia coli MS 60-1] Length = 401 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNVAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|261821153|ref|YP_003259259.1| flagellar hook protein FlgE [Pectobacterium wasabiae WPP163] gi|261605166|gb|ACX87652.1| fagellar hook-basal body protein [Pectobacterium wasabiae WPP163] Length = 405 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 13/161 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ TVGF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGAVTFADMFAGSKVGMGVKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ S+ +LD A+ G ++ L+ G +R+G+F + ++V+A G Sbjct: 58 -LQDFGNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNG-RNIVNAQGMQL 115 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 YPV + P+ D + G++ + AT+ Sbjct: 116 TGYPV--TGTPPVVQTGADPVPLTVPDGDMLSRATTAATLK 154 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 18/149 (12%) Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQ---IPQKDEIFNVGEKGEISQKG-----KV 154 +G F + GS V + +Y PIQ P F + + G I + Sbjct: 259 NGTFTIDLTGS-VQQNTEY----SYKSPIQNGYAPGALTGFAINDDGTIEGNYSNGQKQP 313 Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYE 209 + + L S +G ++ S + L+G + E SN + E Sbjct: 314 LGQILLASFANPEGLSPEGDNAWSETASSGQAVVGLAGTGSLGKLIGKSTESSNVDLSKE 373 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + MI + + S I + + + Sbjct: 374 LVNMIVAQRNYQSNAQTIKTQDSILQTLV 402 >gi|260431756|ref|ZP_05785727.1| flagellar hook protein FlgE [Silicibacter lacuscaerulensis ITI-1157] gi|260415584|gb|EEX08843.1| flagellar hook protein FlgE [Silicibacter lacuscaerulensis ITI-1157] Length = 439 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+AA A RL+T++DN++N+ T G++ ++ F +V A + V Sbjct: 11 ISSSLNAGVAALKANANRLATISDNIANSSTFGYKRVETDFHSMVTAGQGGSYSA-GGVR 69 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE-------SPRGIILTRDGRFKVTDDGS 113 + + L + GS ++T D A++G + ++LT G F+ +G Sbjct: 70 TTSQRLIDQRGSLVTTNNSTDLAVQGRGLLPVRPSSQIGTPSNEMLLTTTGSFRTNAEGY 129 Query: 114 LVSASGKYPVLDMASVPIQIPQ 135 LV+ SG + A+ IP Sbjct: 130 LVTESGLVLLGWPANSDGSIPN 151 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 25/161 (15%) Query: 103 DGRFKVTDDGSLV--------SASGKYPVLDMASVPIQIPQKDE------IFNVGEKGEI 148 G F V G V G + D P+ I + + E G + Sbjct: 277 TGSFVVNVAGGPVEVNVGLIGDPDGITQLSDTF-APVSITRDGSAVGTMASVEIDENGYV 335 Query: 149 SQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGF 198 + + + L V G + +P+ + + Sbjct: 336 YALYDTGVTRRMYQIPLADVPNPNGLTALNSQTYAPSRESGTYFLWNAGEGPTGELISFA 395 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+S + E+ MI + ++S +I ++ + E Sbjct: 396 REESTTDVATELTSMIQTQRAYSSSAKVIQTVDEMLQETTN 436 >gi|291524892|emb|CBK90479.1| fagellar hook-basal body proteins [Eubacterium rectale DSM 17629] Length = 477 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 18/143 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S ++ + R+ + +N++N +T F+ V+FSE++ + Sbjct: 1 MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTTSGTSAGNGAAG 60 Query: 55 ---------KISFVASGKEYLSKEVGSFISTGTELDFALEGD---AWFALESPRGIILTR 102 + + GS +TG D L +F + + TR Sbjct: 61 TGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRLFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLD 125 G F V +G L +S Y + Sbjct: 121 AGDFYVDGNGYLCMSSTGYTLQG 143 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 11/111 (9%) Query: 140 FNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---- 190 V + G+I G + + + + G + ++ + + + Sbjct: 364 ITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCYQSTLNSGEFDGIGVEIS 423 Query: 191 --GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + + MI + F + + +I ++ + E I Sbjct: 424 ADGGSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELIN 474 >gi|289612840|emb|CBI60006.1| unnamed protein product [Sordaria macrospora] Length = 135 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 11/129 (8%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 A + RL A N++N T G++ ++ F++ V A S VA + Sbjct: 9 SATAVMRMAQARLDVAAHNIANVATPGYKR-RIGFADTVAA--------RSEVALATR-I 58 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 S TG LD A+ GD +F + + TR G+F+ DG+LV+ G Y + Sbjct: 59 DAAQASLTETGNVLDMAISGDGYFRVRDGERTLYTRQGQFRRDADGALVTPQG-YVLQQS 117 Query: 127 ASVPIQIPQ 135 + I Sbjct: 118 GGGDLVIDG 126 >gi|196039080|ref|ZP_03106387.1| putative flagellar hook protein FlgE [Bacillus cereus NVH0597-99] gi|196030225|gb|EDX68825.1| putative flagellar hook protein FlgE [Bacillus cereus NVH0597-99] Length = 437 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFS 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDSYVTNTGGQY-VLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|289433960|ref|YP_003463832.1| flagellar basal-body rod protein, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315301915|ref|ZP_07872926.1| flagellar basal body rod protein FlgG [Listeria ivanovii FSL F6-596] gi|289170204|emb|CBH26744.1| flagellar basal-body rod protein, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313629711|gb|EFR97833.1| flagellar basal body rod protein FlgG [Listeria ivanovii FSL F6-596] gi|313634394|gb|EFS00983.1| flagellar basal body rod protein FlgG [Listeria seeligeri FSL N1-067] Length = 259 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 20/249 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR----TIKVKFSEVVGAIKNDIDQKIS 57 IG A + Q + ++N++N T GF+ T +V V N + +++ Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVISKNKVNYQNNPVAKQVG 60 Query: 58 FVASGK----EYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRFK 107 + G +++ GS T + DF + +G +F I L+R G+F Sbjct: 61 TIDYGVRPAATHINLTAGSSYITNRDRDFFMQDANPEQGSNFFITAKNGEISLSRGGQFH 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYSV 163 G L +A G +L +Q+ K G + + + +G S Sbjct: 121 SDQFGFLRTADGA-NLLSATGEAVQVGVK-TSIRAEANGALYNAETNAYLGRLGTRFVSA 178 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 D + + N T ++ G LE SN + EM Q++ + + Sbjct: 179 DQVDNLAKDGEGRLHVNGTNTMNLPAGQGIIQNGVLETSNVDLGVEMVQLMDNQRMVQAS 238 Query: 224 TTLIDENEK 232 +++ +K Sbjct: 239 KNIVNMFDK 247 >gi|157959902|ref|YP_001499936.1| flagellar hook protein FlgE [Shewanella pealeana ATCC 700345] gi|157844902|gb|ABV85401.1| flagellar basal body FlaE domain protein [Shewanella pealeana ATCC 700345] Length = 402 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N+ TVGFR+ + +FS AI N V S Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANSSTVGFRSGRSEFS----AIYNGGQAGGVNVMSTS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK 120 + S GS TG +LD ++G+ +F L G R G F DG + +G Sbjct: 58 QNFSMG-GSLTYTGRQLDMGIQGEGFFVLSGQDGSTSYARAGMFNQDADGYITDPAGN 114 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 9/116 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPL--- 186 I+I ++ G+ +G+V+ L G V N+ + N P+ Sbjct: 291 IRIDDNGMLYGTYTNGQEQIQGQVV----LADFSNPNGLVPTSNNAWTASNAAGQPIIGT 346 Query: 187 -EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + + G+LE SN + EM ++ + + S ++D N + I Sbjct: 347 PTTGTLGGLSAGYLEGSNVDQTAEMVNLMTAQRNYQSNAKVLDTNSTMQQALLNAI 402 >gi|332701537|ref|ZP_08421625.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] gi|332551686|gb|EGJ48730.1| flagellar hook-basal body protein [Desulfovibrio africanus str. Walvis Bay] Length = 532 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFV 59 S ++ + + +S + +N++N +T+GF++ V F ++ + + DQ Sbjct: 5 NSMWTAISGLTSHSESMSVIGNNLANANTLGFKSGTVHFEDMFYSQLSTASGFDQVGHGS 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFKVTDDGSLVSA 117 Y + G ++ AL G F + ++ TR G F +G L Sbjct: 65 RVSTIYTNYTQGPHEASSESTHVALGGKGMFVVTNKTSGSTYYTRAGNFTFNQNGYLTDP 124 Query: 118 SGKYPVLD 125 +G Y V Sbjct: 125 NG-YVVQG 131 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPP----T 184 P + +V + G +S G++I + + D QG + + S T Sbjct: 413 PGFLQDISVNDDGVVSGQYSNGQIIDLFVLAVADFDNYQGLKQEGGNLFSETTESGMART 472 Query: 185 PLEDLSGVT-VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G + LE SN + EM ++I + + F + +I + M E I Sbjct: 473 GTANVGGRGDIASATLEQSNVDMSTEMVRLITIQRGFQANGKVITTTDTLMGEVIN 528 >gi|91224199|ref|ZP_01259462.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269965644|ref|ZP_06179757.1| Flagellar hook protein flgE [Vibrio alginolyticus 40B] gi|91191110|gb|EAS77376.1| flagellar hook protein E [Vibrio alginolyticus 12G01] gi|269829712|gb|EEZ83948.1| Flagellar hook protein flgE [Vibrio alginolyticus 40B] Length = 398 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFSAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + K+ GS TG +D A+ G +F + G + TR G F + + + SG Sbjct: 58 QNFDKD-GSITGTGRAMDLAINGGGFFVTKDNMGQMLYTRSGVFSTDKNNFVTANSG 113 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 5/94 (5%) Query: 153 KVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 ++ + L +QG + S P+ + G + G LE SN + Sbjct: 305 QLQGQVVLADFANTQGLAKVSGTSWTQSFSSGAPIMGVPGSGTMGDLTPGALEGSNVDLT 364 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I ++K + Sbjct: 365 SELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398 >gi|238924161|ref|YP_002937677.1| flagellar hook protein [Eubacterium rectale ATCC 33656] gi|238875836|gb|ACR75543.1| flagellar hook protein [Eubacterium rectale ATCC 33656] Length = 477 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 18/143 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S ++ + R+ + +N++N +T F+ V+FSE++ Sbjct: 1 MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTTSGASAGNGAAG 60 Query: 49 ---KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGD---AWFALESPRGIILTR 102 KN + + GS +TG D L +F + + TR Sbjct: 61 TGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRLFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLD 125 G F V +G L +S Y + Sbjct: 121 AGDFYVDGNGYLCMSSTGYTLQG 143 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 11/111 (9%) Query: 140 FNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---- 190 V + G+I G + + + + G + ++ + + + Sbjct: 364 ITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCYQSTLNSGEFDGIGVEIS 423 Query: 191 --GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + + MI + F + + +I ++ + E I Sbjct: 424 ADGGSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELIN 474 >gi|4378858|gb|AAD19726.1| flagellar hook protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 412 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 26/191 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-FVASG 62 +F L A + LS ++N++N+ + GF+ F E+V Q I Sbjct: 2 AFYTSLTGLNAAQTDLSVPSNNIANSGSYGFKKTTTDFGELVADSPLASGQNIGQGTRLR 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLVSAS 118 GS +T LD + GD +F ++SP I LTRDG F + ++V++ Sbjct: 62 ATIQDFTSGSMKTTNRALDMMVNGDGFFLVKSPRPPSGTISLTRDGSFLTDKNNNVVTSD 121 Query: 119 GKY--------------------PVLDMASVPIQIPQKDEIFNV-GEKGEISQKGKVIAT 157 G Y + +P ++ ++ GE Q G +A Sbjct: 122 GHYLQVYATTNSGNIYNNGETGSATGGRVVKNLTLPSYEDQVSISSATGETVQVGNNLAR 181 Query: 158 MGLYSVDMSQG 168 G +V + G Sbjct: 182 TGDVTVTGTNG 192 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 11/116 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS-----GISPNIPPTPLE 187 +VG G+++ ++ + L V+ G N+ G S ++ + Sbjct: 298 SNISVGTDGKVTATFANGNQYILGAVALGDVNNRNGLHSTGNANWTVTGTSGSLNYREAD 357 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +V+ G LE SN + E+ +I + F + + I + M+ + NI S Sbjct: 358 TSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAI-STDNQMVSYVMNIQS 412 >gi|315179626|gb|ADT86540.1| flagellar hook protein E [Vibrio furnissii NCTC 11218] Length = 398 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFSAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + K GS TG +D A+ G +F + G + TR G F D +V +G Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDSMGQTLYTRSGVFGTDKDNYVVGNTGAKL 116 Query: 120 -KYPVLDMAS 128 Y V + Sbjct: 117 QGYSVDGNNN 126 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 5/94 (5%) Query: 153 KVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 ++ + L + QG + + +P + G + G LE SN + Sbjct: 305 QLQGQVVLANFANPQGLAKVSGTAWTQSFSSGSPTVGVPGTGTLGDLTPGALEGSNVDLT 364 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I +K I Sbjct: 365 SELVSLMTAQRNYQANAKTISTEDKLTQALFNAI 398 >gi|167644975|ref|YP_001682638.1| hypothetical protein Caul_1010 [Caulobacter sp. K31] gi|167347405|gb|ABZ70140.1| protein of unknown function DUF1078 domain protein [Caulobacter sp. K31] Length = 556 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 11/193 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ G++ ++ L+ ++DN++N +TVG++ FS +V A V Sbjct: 3 INSAMLAGVSGLISNSSALAAISDNIANVNTVGYKRSSANFSTLVTAQSKSATYSAGGVK 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFA-------LESPRGIILTRDGRFKVTDDGS 113 + + G ST + LD ++ G +F L + TR G F++ + G Sbjct: 63 AQTHQFVSQQGLTQSTTSNLDLSIAGSGFFVGTEKPEGLTATDTRSFTRAGSFQLDNLGY 122 Query: 114 LVSASGKYP---VLDMASVPIQ-IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 L + +G Y + D + I P + G + + +G+ + S+ Sbjct: 123 LKNDAGLYLQGWLADPVTGTITPDPSDLTQLSSINVGTVGGTAEKTTRIGVNANLRSEQP 182 Query: 170 VRRENSGISPNIP 182 V + ++ Sbjct: 183 VSAAANAVATKTA 195 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 12/115 (10%) Query: 135 QKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPP------ 183 V +KG +S + IA + + + G + Sbjct: 439 GNLTNIEVDDKGYVSAIFDNGVTRRIAQVAIATFSNPNGLKGVNGNAYRVTNESGTYSLK 498 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 TP +G ++ LE S + E +I + +++ + +I ++ + E + Sbjct: 499 TPGGGGAG-SIAPSTLEASTVDLSTEFTGLITTQRAYSASSKIITTADQMLEELL 552 >gi|291529033|emb|CBK94619.1| fagellar hook-basal body proteins [Eubacterium rectale M104/1] Length = 477 Score = 108 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 18/143 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S ++ + R+ + +N++N +T F+ V+FSE++ + Sbjct: 1 MMRSLYSAVSGLKTHQTRMDVIGNNIANVNTEAFKASSVRFSEIMYQTASGASAGNGATG 60 Query: 55 ---------KISFVASGKEYLSKEVGSFISTGTELDFALEGD---AWFALESPRGIILTR 102 + + GS +TG D L +F + + TR Sbjct: 61 TGGKNAKQIGLGVKSGATAVNITGAGSAETTGNPFDLRLNDKNATNFFVVSDGTNRLFTR 120 Query: 103 DGRFKVTDDGSLVSASGKYPVLD 125 G F V +G L +S Y + Sbjct: 121 AGDFYVDGNGYLCMSSTGYTLQG 143 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 61/176 (34%), Gaps = 25/176 (14%) Query: 78 TELDFALEGDAW--FALESPRGIILTRDGRFKVTD-DGSLVSASGKYPVLDMASVPIQIP 134 D ++ G + ++ + + +G + +G+L GK L + Sbjct: 310 NTQDASINGSNFSNIEVDFSKSMNYNNNGTSTIGGMNGNLQ-GDGKGKALGALTG----- 363 Query: 135 QKDEIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 V + G+I G + + + + G + ++ + + + + Sbjct: 364 -----ITVSDDGKIYGSYDNGNTVLLCQIAVAQFANASGLEKIGDNCYQSTLNSSEFDGI 418 Query: 190 S------GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + + MI + F + + +I ++ + E I Sbjct: 419 GVEISADGGSISSGELEMSNVDLSSQFTDMIVTQRGFQANSRVITTSDTLLEELIN 474 >gi|167945456|ref|ZP_02532530.1| flagellar hook protein FlgE [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 175 Score = 108 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 17/180 (9%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--FVASGKEYLSKEVGSFI 74 L +N++N+ T GF+ + +F+++ + +D S V + K S Sbjct: 3 TDLEVTGNNIANSSTTGFKESRAEFADIFASSISDASNATSGQGVRTTKVAQQFRQDSIE 62 Query: 75 STGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 T LD + G+ +F +E P G TR G F V +G +V +G +QI Sbjct: 63 FTANNLDLGINGEGFFTMEQPNGDRSYTRAGAFNVDRNGYVVDHTGSR---------LQI 113 Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 V G G + + S P + + Sbjct: 114 FPP-----VDADGTSFNTGTTVDLNLPVVSGAPGATSQVTASLNLGAAEDVPTVAFNAAS 168 >gi|120597305|ref|YP_961879.1| flagellar hook protein FlgE [Shewanella sp. W3-18-1] gi|120557398|gb|ABM23325.1| flagellar basal body FlaE domain protein [Shewanella sp. W3-18-1] Length = 395 Score = 108 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GFR + +F+ + + Q Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTNGFRGGRSEFASIY-----NGGQAGGVSVMST 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASG 119 + GS TG +LD ++G+ +F L+ + G + R G F G + G Sbjct: 57 TQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGTDGGAMYARAGMFHKDSQGFITDPVG 113 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 5/94 (5%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVTVKRG----FLEDSNANSM 207 ++ + L + G N+ ++ N + +LE SN ++ Sbjct: 302 QLQGQVILANFSNPNGLSAVSNNAWVATNTAGQAITGAPSTGTMGTVTGGYLEGSNVDTT 361 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ + + S ++D N + I Sbjct: 362 AEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNAI 395 >gi|146294550|ref|YP_001184974.1| flagellar hook protein FlgE [Shewanella putrefaciens CN-32] gi|145566240|gb|ABP77175.1| flagellar basal body FlaE domain protein [Shewanella putrefaciens CN-32] Length = 395 Score = 108 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A Q L+T+++N++N T GFR + +F+ + + Q Sbjct: 2 SFNIALSGLQATTQDLNTISNNIANASTNGFRGGRSEFASIY-----NGGQAGGVSVMST 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGIILTRDGRFKVTDDGSLVSASG 119 + GS TG +LD ++G+ +F L+ + G + R G F G + G Sbjct: 57 TQNFSKGGSLTYTGRQLDMGIQGEGFFVLKGTDGGAMYARAGMFHKDSQGFITDPVG 113 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 5/94 (5%) Query: 153 KVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGVTVKRG----FLEDSNANSM 207 ++ + L + G N+ ++ N + +LE SN ++ Sbjct: 302 QLQGQVILANFSNPNGLSAVSNNAWVATNTAGQAITGAPSTGTMGTVTGGYLEGSNVDTT 361 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ + + S ++D N + I Sbjct: 362 AEMVNLMSAQRNYQSNAKVLDVNSTMQQALLNAI 395 >gi|28952050|ref|NP_240159.2| flagellar hook protein FlgE [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681699|ref|YP_002468085.1| flagellar hook protein FlgE [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471395|ref|ZP_05635394.1| flagellar hook protein FlgE [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624542|gb|ACL30697.1| flagellar hook protein FlgE [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086078|gb|ADP66160.1| flagellar hook protein FlgE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086649|gb|ADP66730.1| flagellar hook protein FlgE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087235|gb|ADP67315.1| flagellar hook protein FlgE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087754|gb|ADP67833.1| flagellar hook protein FlgE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 408 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 I ++ LA + +++N++N T+G+++ K F ++ V Sbjct: 5 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 64 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G + TG +LD + D +F L +G + TRDG+F + D ++++ G Y Sbjct: 65 NFNNGMLVETGRDLDLGIIKDGFFRLVDSQGHVYYTRDGQFFLDKDQNIINIQGMY 120 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%) Query: 135 QKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 + F++ GEI +QK + I + L + + S + Sbjct: 291 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATAESGEAKTA 350 Query: 190 SGVTVK-RGFL-----EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G L E SN + E+ MI + + S +K + I Sbjct: 351 MKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLIN 406 >gi|289607949|emb|CBI60684.1| unnamed protein product [Sordaria macrospora] Length = 240 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 9/150 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-------AIKNDID 53 M + IGL+ A + L V++N+SN +T GF+ V F + ++ Sbjct: 1 MFGAIYIGLSGLNAYSKGLQQVSNNVSNLNTTGFKGSTVSFHNLYATPDRGGMSLTGQGG 60 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 V L+ + G ST +LD +++G + L + R G F+V G Sbjct: 61 SAGYGVEVDDGTLNFKQGELRSTDRDLDLSVDGSGFLVLLDGDRTLYARTGSFEVDPAGF 120 Query: 114 LVSASGKYPV--LDMASVPIQIPQKDEIFN 141 +V + Y + LD + + + Sbjct: 121 IVMSGTSYRLATLDATGRAVSLSVDARRTS 150 >gi|291617020|ref|YP_003519762.1| FlgE [Pantoea ananatis LMG 20103] gi|291152050|gb|ADD76634.1| FlgE [Pantoea ananatis LMG 20103] Length = 415 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 7/141 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + GS +T LD AL G+ +F L + G + +R+G+F + + +LV+ G Sbjct: 58 -IQNFNDGSTTTTSRGLDVALSGNGFFRLTNSAGAVSYSRNGQFTLDQNRNLVNTQGLNV 116 Query: 123 VL-DMASVPIQIPQKDEIFNV 142 + VP I + Sbjct: 117 TGYPASGVPPTIQSGANPVAI 137 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G I+ Q+ +++ + L S +G + ++ N Sbjct: 298 PGDLTSYAINNDGTITGSYSNQRTQLLGQIVLASFSNPEGLKSQGDNVWAETNASGQAAV 357 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+ ++ G LE SN + E+ MI + + + I ++ + + Sbjct: 358 GLANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVN 413 >gi|307546968|ref|YP_003899447.1| flagellar hook protein FlgE [Halomonas elongata DSM 2581] gi|307218992|emb|CBV44262.1| flagellar hook protein FlgE [Halomonas elongata DSM 2581] Length = 422 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 11/173 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ L+ A L + +N++N+ TVGF+ F++V K + K+S V Sbjct: 2 GFSQALSGLNAASSSLDVLGNNIANSQTVGFKGSDTLFADVYANSKVGLGTKVSRV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123 G+ STG LD + G+ + + ++ +R+G+ +T DG L +A G + Sbjct: 58 -LQDFGEGNLESTGRNLDLGISGEGFLRFQQNGEVVYSRNGQLSMTADGYLENAQGA-RL 115 Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 + + ++ G+ + + +A V + RE G Sbjct: 116 MGFG-----VNDAGQVQTGGQPSVLQVSAEEMAASATTDVATTLNLDSREAVG 163 Score = 75.1 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLED 188 ++ + G I +++ + + L S +G ++ + P Sbjct: 311 ISIEDDGTIVRNYTNEQSRPAGQVSLASFRNPEGLDPVGDNAWAATAASGQELVGAPGTG 370 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G +E SN + E+ MI + + + + I ++ + AI Sbjct: 371 QLG-GIQSGVVESSNVDMAQELVDMIVTQRAYQANSQTIKTQDEVLQTAIN 420 >gi|260767923|ref|ZP_05876857.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] gi|260615953|gb|EEX41138.1| flagellar hook protein FlgE [Vibrio furnissii CIP 102972] Length = 398 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFSAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 + K GS TG +D A+ G +F + G + TR G F D +V +G Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDSMGQTLYTRSGVFGTDKDNYVVGNTGAKL 116 Query: 120 -KYPVLDMAS 128 Y V + Sbjct: 117 QGYSVDGSNN 126 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 5/94 (5%) Query: 153 KVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 ++ + L + QG + + +P + G + G LE SN + Sbjct: 305 QLQGQVVLANFANPQGLAKVSGTAWTQSFSSGSPTVGVPGTGTLGDLTPGALEGSNVDLT 364 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I +K I Sbjct: 365 SELVSLMTAQRNYQANAKTISTEDKLTQALFNAI 398 >gi|291276324|ref|YP_003516096.1| flagellar hook subunit protein [Helicobacter mustelae 12198] gi|290963518|emb|CBG39349.1| flagellar hook subunit protein [Helicobacter mustelae 12198] Length = 705 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------------KNDIDQKIS 57 A + L ++N++N +T GF+ + F +++ +ND+ + Sbjct: 1 MQAHQVALDVESNNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVSVGLG 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLV 115 V GS +T + D A+EGD +F + RG TRDG F +G+LV Sbjct: 61 -VNVNSTTKVFSQGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDANGNLV 119 Query: 116 SASGKYPVLD 125 + +G Y V Sbjct: 120 T-NGGYVVQG 128 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISP-NIPPTPLEDLSGV----TVKRGFLEDSNANSMYE 209 +A + L + + G + S P+ + +V LE SN + Sbjct: 613 LAQVALANFANNTGLQAIGGNVFSTSGNSGDPIIGAANTGRRGSVNGSKLEMSNVDLSRS 672 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + Q+I + + F + + + +++ + + Sbjct: 673 LTQLIVVQRGFQANSKAVTTSDQILNTLL 701 >gi|49480337|ref|YP_035873.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331893|gb|AAT62539.1| flagellar hook protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 437 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 27/171 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNAAQNALSVTSNNIANAQTVGYKKQKAIFDDLLYNNTVGSRGDGAYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFAL--ESPRGIILTRDGRFK 107 + GS T +++ A+EG+ F + + + TR G F Sbjct: 61 TNPKSIGNGVKFSGTSTDFSDGSITLTSDKMETAIEGNGLFLVGDRNAGNVEYTRKGSFS 120 Query: 108 VTDDGSLVSASGKYPVLDMA-------------SVPIQIPQKDEIFNVGEK 145 V+ D + + G+Y VL PI IP + + Sbjct: 121 VSKDSYVTNTGGQY-VLGYGVKTGTQEVDFSSRPSPIHIPMGSAVGGIQTD 170 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 137 DEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGISPNIPPTPLEDLS 190 +++ + G + G KV+ + + + S G ++ N + ++ P ++ Sbjct: 322 ANDYSISDGGFVMMKYSDGSMKVVGQLAVATFPNSGGLMKTGNGNYVATPSAGIPGIGVA 381 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ E SN + E ++ + F +I +++ + E + Sbjct: 382 GENGAGNVRGSAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 434 >gi|253827676|ref|ZP_04870561.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] gi|253511082|gb|EES89741.1| flagellar hook protein [Helicobacter canadensis MIT 98-5491] Length = 765 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 34/176 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + + ++N++N +T GFR +F + N ++ Sbjct: 1 MVGSLYSGISGIKTHQTGIDVTSNNIANVNTTGFRANSPEFKSLFSTHLNYVNSNSPVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGI 98 V G ++ G++++ + + A G WF + + Sbjct: 61 DYNYGVTIGSNAINTNDGTYVNADGDFNVAYSGKGWFVVGLNKNGAFDITNPDYTGAQQN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 TRDG F + +G LV++SG Y + G ++ + Sbjct: 121 YFTRDGSFSLDGEGYLVNSSGYYMYGINLG------------KIAADGTLTGANNL 164 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN----------IP 182 + E G I + I +G+ + QG + + N + Sbjct: 637 NDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGETSVVS 696 Query: 183 PTPL---EDLSGVTVKRG-----FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 PL E+ ++K G LE SN ++ + +I + + I ++ M Sbjct: 697 GPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLM 756 Query: 235 LEAIR 239 EAI+ Sbjct: 757 QEAIQ 761 >gi|222147375|ref|YP_002548332.1| flagellar hook protein FlgE [Agrobacterium vitis S4] gi|221734365|gb|ACM35328.1| flagellar hook protein [Agrobacterium vitis S4] Length = 411 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 27/165 (16%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ N ++ A +L+++ DN+SNT T G++ + FS +V S Sbjct: 5 SAMNSSVSGLTAQSNKLTSIGDNISNTSTTGYKGTETAFSSLVN----------GGTTST 54 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G ST +E D A++GD +F ++ G + LTR G F++ +DG LV++SG Y Sbjct: 55 TTQTVSQSGDLESTSSETDLAIDGDGYFVVQDDEGDVFLTRQGDFEIDEDGYLVNSSG-Y 113 Query: 122 PVLD---------------MASVPIQIPQKDEIFNVGEKGEISQK 151 +L P++I + + GE+S Sbjct: 114 TLLGYSYDNGEPASVINGFDGLEPVKIDTSEVTASATTTGEVSGN 158 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 10/111 (9%) Query: 139 IFNVGEKG---EISQKGKVIAT--MGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV 192 + +G G +S G T + L +V + + T + +G Sbjct: 298 DYTIGSDGVISTVSSDGTTTDTYKIALATVASPDNLEEVGGTAYKVDADSGTVVVGFAGT 357 Query: 193 ----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ LE SN + E+ MI + +++ + + + I Sbjct: 358 GSFGTIESSTLESSNVDLASELSDMIAAQRAYSANSKVFQTAADMLDTVIN 408 >gi|219682254|ref|YP_002468638.1| flagellar hook protein FlgE [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621987|gb|ACL30143.1| flagellar hook protein FlgE [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 408 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 I ++ LA + +++N++N T+G+++ K F ++ V Sbjct: 5 IAISGLLANNDYMEIISNNIANASTIGYKSRKPLFFDMFSHSFYSNTTNGYGVGISSIIQ 64 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G + TG +LD + D +F L +G + TRDG+F + D ++++ G Y Sbjct: 65 NFNNGMLVETGRDLDLGIIKDGFFRLVDSQGHVYYTRDGQFFLDKDQNIINIQGMY 120 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%) Query: 135 QKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 + F++ GEI +QK + I + L + + S + Sbjct: 291 GNLKTFDIVTNGEIIGTYCNQKQQTIGQILLSKFINPEKLQPESGNLWSATAESGEAKTA 350 Query: 190 SGVTVK-RGFL-----EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G L E SN + E+ MI + + S +K + I Sbjct: 351 MKAGIQESGVLSNKTLEVSNVDLNKELINMIIAQRNYQSNAQSFKTEDKIINTLIN 406 >gi|16125154|ref|NP_419718.1| flagellar hook protein [Caulobacter crescentus CB15] gi|221233884|ref|YP_002516320.1| flagellar hook protein FlgE [Caulobacter crescentus NA1000] gi|6226612|sp|P35806|FLGE_CAUCR RecName: Full=Flagellar hook protein flgE gi|3493243|gb|AAC33329.1| flagellar hook protein [Caulobacter crescentus CB15] gi|13422168|gb|AAK22886.1| flagellar hook protein [Caulobacter crescentus CB15] gi|220963056|gb|ACL94412.1| flagellar hook protein FlgE [Caulobacter crescentus NA1000] Length = 591 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 14/170 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ G++ +A L+ ++DN++N +TVGF+ FS +V + + V Sbjct: 3 INSAMLAGVSGLIANSSALAAISDNIANVNTVGFKRSTSNFSTLVTSGNKNQTYSAGGVK 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFA-------LESPRGIILTRDGRFKVTDDGS 113 + + G ST + LD ++ G +F L + TR G F++ + G Sbjct: 63 AQTHQFISQQGLTQSTTSNLDISISGAGFFVTTEKPENLTATDTRSFTRAGSFQLDNLGY 122 Query: 114 LVSASGKYP---VLDMASVPIQIPQKD----EIFNVGEKGEISQKGKVIA 156 L + +G Y + D S I D NVG G ++K + Sbjct: 123 LRNDAGLYLQGWLADPVSGLITPDPSDLMQLASINVGSVGGTAEKTTRVG 172 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 12/116 (10%) Query: 135 QKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPP------ 183 + E G +S + IA + + + G + Sbjct: 474 GNLTNIEIDEGGYVSAIFDNGVTRRIAQVAIATFSNPNGLKGVNGNAYRVTNESGTYSLK 533 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + +G + LE S + E +I + +++ + +I ++ + E + Sbjct: 534 APSQGGAGA-LAPSTLEASTVDLSQEFTGLITTQRAYSASSKIITTADQMLEELLN 588 >gi|23015641|ref|ZP_00055411.1| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 804 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 9/152 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ + + ++DN++N +T G++ KV F +V + V S Sbjct: 6 ALFSGVSGLASQSSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTSYSPGGVQSKP 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP-------RGI-ILTRDGRFKVTDDGSLV 115 G +T D AL G F + + G+ TR G FKV +G L Sbjct: 66 RAAIDSQGLLQATTESTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDKEGYLQ 125 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 + SG Y V P + + G Sbjct: 126 NVSGFY-VQGWPLQPTNNNTLAKPTELTIDGN 156 >gi|303249022|ref|ZP_07335267.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] gi|302489608|gb|EFL49548.1| fagellar hook-basal body protein [Desulfovibrio fructosovorans JJ] Length = 519 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---VGAIKNDIDQKISF 58 ++ G++ L+ ++ +N++NT T G+++ ++ F+++ + +D Q + Sbjct: 1 MSAIWTGVSGLLSYSTGIANTGNNLANTGTTGYKSSRLLFADMISEMAGGTSDGSQIGTG 60 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGD-AWFALESP--RGIILTRDGRFKVTDDGSLV 115 V G ++ GS IS +D A+ G+ +F ++ P TRDG F +G L Sbjct: 61 VQVGSVSMTTSTGSPISASQSMDMAINGERGYFVVKKPGTDKTYYTRDGAFNFDVNGYLT 120 Query: 116 SASG 119 + +G Sbjct: 121 TETG 124 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 141 NVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGVTV 194 +V E G IS G+ I +GL R N+ +S + V Sbjct: 408 SVDENGVISGTFSNGQTIELFVVGLADFVNPTDLYREGNNLLSATKESGDASLGRANSGV 467 Query: 195 ---KRGF-LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+ LE SN + EM +I L + F S + ++ ++ M +A+ Sbjct: 468 FDSVSGYTLESSNVDMATEMVNLITLQRAFQSNSKVVTTADEMMQKAL 515 >gi|322832564|ref|YP_004212591.1| flagellar hook-basal body protein [Rahnella sp. Y9602] gi|321167765|gb|ADW73464.1| flagellar hook-basal body protein [Rahnella sp. Y9602] Length = 414 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 8/158 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ TVGF+T F+++ + + K++ V Sbjct: 2 SFSQAVSGLSAASTNLDVIGNNIANSATVGFKTATASFADMFAGSQTGMGVKVAAVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + G+ +T LD AL G+ +F L G + +R+G+F + + +LV+ G Sbjct: 60 ---NFNDGTTTNTSRGLDVALSGNGFFRLTDTSGAVYYSRNGQFSLDANRNLVNMQGLSV 116 Query: 123 VL-DMASVPIQIPQKDEIFNVGEKGEI-SQKGKVIATM 158 P I + + + S K + TM Sbjct: 117 TGFPATGTPPTIAAGAQPVALNIPTTLMSAKATTVGTM 154 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 65/207 (31%), Gaps = 21/207 (10%) Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 D S G+ +ST A G AL P +G Sbjct: 212 YAQDGSVTGSTAGKIGAMQFDTSGALVSTTNAAGVANAG---LALTLPMNTA--TNGTVT 266 Query: 108 -----VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIAT 157 + GS+ ++G + + + + + + G IS K +++ Sbjct: 267 PQTVSLDFTGSIQQSTGSDSI-GSQTQDGYAAGQMTGYTINDDGTISGTYSNNKTQLLGQ 325 Query: 158 MGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQ 212 + L + +G ++ + + ++G ++ G LE SN + E+ Sbjct: 326 IVLSNFSNPEGLKSEGDNVWTATASSGQAVTGIAGQGGLASMTSGALESSNVDLSAELVN 385 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 MI + + S I + + + Sbjct: 386 MIVAQRNYQSNAQTIKTQDSILNTLVN 412 >gi|254227983|ref|ZP_04921413.1| Flagellar hook protein FlgE [Vibrio sp. Ex25] gi|262396035|ref|YP_003287888.1| flagellar hook protein FlgE [Vibrio sp. Ex25] gi|151939479|gb|EDN58307.1| Flagellar hook protein FlgE [Vibrio sp. Ex25] gi|262339629|gb|ACY53423.1| flagellar hook protein FlgE [Vibrio sp. Ex25] Length = 398 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +FS V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFSAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K+ GS TG +D A+ G +F + G + TR G F D + + SG Sbjct: 58 QNFDKD-GSISGTGRAMDLAINGGGFFVTKDNMGQTLYTRSGVFATDKDNFVTANSG 113 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 5/94 (5%) Query: 153 KVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT----VKRGFLEDSNANSM 207 ++ + L +QG + + P+ + G + G LE SN + Sbjct: 305 QLQGQVVLADFANTQGLAKVSGTAWTQSFSSGAPITGVPGSGTLGDLTPGALEGSNVDLT 364 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + I ++K + Sbjct: 365 SELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398 >gi|327393471|dbj|BAK10893.1| flagellar hook protein FlgE [Pantoea ananatis AJ13355] Length = 415 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 7/141 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + GS +T LD AL G+ +F L + G + +R+G+F + + +LV+ G Sbjct: 58 -IQNFNDGSTTTTSRGLDVALSGNGFFRLTNSAGAVSYSRNGQFTLDQNRNLVNTQGLNV 116 Query: 123 VL-DMASVPIQIPQKDEIFNV 142 + VP I + Sbjct: 117 TGYPASGVPPTIQTGANPVAI 137 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G I+ Q+ +++ + L S +G + ++ N Sbjct: 298 PGDLTSYAINNDGTITGSYSNQRTQLLGQIVLASFSNPEGLKSQGDNVWAETNASGQAAV 357 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+ ++ G LE SN + E+ MI + + + I ++ + + Sbjct: 358 GLANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVN 413 >gi|168764488|ref|ZP_02789495.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4501] gi|189365520|gb|EDU83936.1| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4501] Length = 401 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ + V+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNQVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|238793998|ref|ZP_04637616.1| Flagellar hook protein FlgE [Yersinia intermedia ATCC 29909] gi|238726630|gb|EEQ18166.1| Flagellar hook protein FlgE [Yersinia intermedia ATCC 29909] Length = 425 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 18/161 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG--- 119 G+ +T LD A+ +F ++ G+ R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFNDGTPTTTNRRLDLAISQSGFFRMQDSSGGVFFARNGQFKLDENRNIVNMQGLSL 116 Query: 120 -KYPV--------LDMASVPIQIPQKDEIFNVGEKGEISQK 151 YP VP+ IPQ G + Sbjct: 117 TGYPATGTPPTVQQGANPVPLSIPQDMIAAKATTSGNMVAN 157 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPL----EDL 189 F + G + +Q+ +++ + L + +G ++ P+ Sbjct: 314 FQINNDGSVVGTYSNQQTQLLGQIVLVNFSNPEGLSPEGDNVWKETKSSGNPILGTAGGG 373 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 374 GFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 423 >gi|291276999|ref|YP_003516771.1| flagellar hook protein FlgE [Helicobacter mustelae 12198] gi|290964193|emb|CBG40039.1| Putative flagellar hook protein, FlgE [Helicobacter mustelae 12198] Length = 600 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 21/143 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + L ++++N++N +T G+R +F ++ ++ Sbjct: 1 MNNTILNSYSGIKTHQFGLDSISNNIANVNTPGYREHIPEFKTLLSRNIASVNGSTVSSD 60 Query: 58 ---FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGII 99 V+ +S + G + + + D A EG WF + E + Sbjct: 61 SNYGVSVSSNAISTKSGDYKRSDGDFDMAYEGKGWFIVGKNSKGSLSINEDGYEGNQQNY 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYP 122 TRDG F DG LV+A+G Y Sbjct: 121 FTRDGSFSRDSDGYLVNAAGYYV 143 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 24/124 (19%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVR-----------RENSGISPNIPP 183 ++ E G I + +G+ + QG + +N+G + + Sbjct: 474 VSIDENGIIQLNFDNGVSTPMGRIGIAAFSNDQGLHKVGGNLFELKQTTDNNGDNKILSG 533 Query: 184 TPLEDLSG--------VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P+ G V +LE SN + + +I + + ++ + + + Sbjct: 534 APILGWDGDGDGRLKFGRVMHKYLETSNTDVTSALTNLILMQRGYSMNAKALSTGDDLIK 593 Query: 236 EAIR 239 EAI Sbjct: 594 EAIN 597 >gi|27378811|ref|NP_770340.1| flagellar hook protein FlgE [Bradyrhizobium japonicum USDA 110] gi|27351960|dbj|BAC48965.1| flgE [Bradyrhizobium japonicum USDA 110] Length = 421 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A A Q LS ++DN++N+DT G++T F +V A N V Sbjct: 6 ALSSAISALSAQSQSLSMISDNIANSDTTGYKTTSAMFDALVTASSNATSYASGGVTVSG 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASGK 120 + G +T D A++G +FA+ + I TR+G F + + G L + +G Sbjct: 66 RANITQQGLLAATSNATDVAIQGSGFFAVSNSTSGGTISYTRNGAFTINNAGYLEN-NGN 124 Query: 121 Y 121 Y Sbjct: 125 Y 125 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPP------TPL 186 ++G+ G + G+ IA + + + G R + S + Sbjct: 307 SSVSIGKDGVVDATYSNGQTIAIYKIAVATFADPNGLSARSDGIYSATVTSGNAALQASG 366 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E+ +G T+ LE S ++ + MI Q +++ + +I K I Sbjct: 367 ENGAG-TIYGSELESSTTDTSSQFSSMISAQQAYSAASQVISTVNKMYDTLI 417 >gi|209963559|ref|YP_002296474.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] gi|209957025|gb|ACI97661.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] Length = 434 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 8/127 (6%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G++ A + + ++DN+SN+ TVG++ V+FS +V + + V + Sbjct: 5 SAMYSGVSGLAAQSAKFAAISDNISNSSTVGYKRSGVQFSTLVTSASSPGSYSAGGVQAD 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP----RGII----LTRDGRFKVTDDGSL 114 G +T + D A+ G +F + + G LTR G F+V ++G+L Sbjct: 65 LHTEVSRGGIVQATNSATDMAISGRGFFVVSNRSAAVNGEAPSYMLTRSGAFRVDENGNL 124 Query: 115 VSASGKY 121 + +G + Sbjct: 125 HNTAGYF 131 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 23/157 (14%) Query: 103 DGRFKVTDDGS-LV------SASGKYPVLDMASVPIQIPQKD------EIFNVGEKG--- 146 G K+ +G +V + +G VP +I + E +G+ G Sbjct: 272 TGSIKLDVNGQPIVVNLGRPNQTGGLTQWGDDYVPTKINKDGASYAPLERVEIGDDGVMT 331 Query: 147 EISQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFL 199 I + G + + + + V G R + + + V L Sbjct: 332 AIYKNGLRQAVYQIPVADVTNPDGLRRMDGNAFQVSRESGDYYLWDAGSGKAGAVDGAAL 391 Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 E SN + E+ +I + ++S +I ++ + E Sbjct: 392 EASNVDIAEELTSIIETQRAYSSNAKIIQTADEMLDE 428 >gi|123442784|ref|YP_001006761.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161322|ref|YP_004297899.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089745|emb|CAL12598.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605242|emb|CBY26740.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665552|gb|ADZ42196.1| flagellar hook protein FlgE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860606|emb|CBX70903.1| flagellar hook protein flgE [Yersinia enterocolitica W22703] Length = 419 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYP 122 G+ +T LD A+ +F ++ G++ R+G+FK+ ++ ++V+ G Sbjct: 60 ---DFNDGTTTTTNRRLDLAISQSGFFRMQDSSGGVLYARNGQFKLDENRNIVNMQGLSL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P + Q + Sbjct: 117 TGYPATGTPPTVQQGANPVALS 138 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV- 192 F + G I + + +++ + + + +G ++ + P+ +G Sbjct: 308 FQINNDGSIVGTYSNSQTQLLGQIVMVNFANPEGLSSEGDNVWKETLSSGNPILGTAGSG 367 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 368 GFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLVN 417 >gi|291334032|gb|ADD93707.1| flagellar basal body FlaE domain protein [uncultured marine bacterium MedDCM-OCT-S04-C749] Length = 210 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 75/209 (35%), Gaps = 31/209 (14%) Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVSAS- 118 G S GS I T D AL G+ F L++P + TR+G F + D G L S++ Sbjct: 2 GASRRSDGQGSIIDTDNRTDLALLGNGMFILKNPNSVTPSFTRNGTFSLDDAGFLRSSND 61 Query: 119 -------------GKYPVLDMASVPIQI-----PQKDEIFNVGEKGEI-----SQKGKVI 155 G P PIQI + G I ++ + Sbjct: 62 AFVMGSPLVDGLFGPTPAELDGLSPIQIQLKREDVPMSELRILGDGRIEASYGTEVSYPV 121 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----EDLSGVTVKRGFLEDSNANSMYEM 210 +T+ L + G + + DL ++K G LE SN N E+ Sbjct: 122 STVALGVFSNNNGLKELGGGIYAQTDKSGAVNLGAPADLGYASLKSGGLEASNVNITDEL 181 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 MI Q+FN L+ N + + + R Sbjct: 182 TAMIKAQQQFNGSARLMQTNSEMVEKLTR 210 >gi|83309603|ref|YP_419867.1| flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] gi|82944444|dbj|BAE49308.1| Flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] Length = 843 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 9/152 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ + + ++DN++N +T G++ KV F +V + V S Sbjct: 6 ALFSGVSGLASQSSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTTYSPGGVQSKP 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP-------RGI-ILTRDGRFKVTDDGSLV 115 G +T D AL G F + + G+ TR G FKV +G L Sbjct: 66 RAAIDSQGLLQATTNSTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDKEGYLQ 125 Query: 116 SASGKYPVLDMASVPIQIPQKDEIFNVGEKGE 147 + SG Y V P + + G Sbjct: 126 NVSGFY-VQGWPLQPTNNNVLAKPTELTVDGN 156 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ---KG--KVIATMGLYSVDMSQGFVR-RENSGISPNIPPT----PLEDL 189 +VG G ++ G + + + + + G NS I N + + Sbjct: 731 VSVGTDGVVTALFDNGVRRPVFQIPVATFTNPNGLESLTGNSWIETNTSGSYTLRQANNA 790 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +V+ LE S + E MI + +++ +I ++ + E ++ Sbjct: 791 GAGSVQSASLEASTVDIGSEFTTMIITQRAYSAAAKIITTADQMLDELVQ 840 >gi|296274021|ref|YP_003656652.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] gi|296098195|gb|ADG94145.1| fagellar hook-basal body protein [Arcobacter nitrofigilis DSM 7299] Length = 783 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 11/140 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + G++ A ++ L + N++N +T+G++ ++ F++ + + I + Sbjct: 1 MIGALWTGISGLSAQQKALDNESHNIANVNTIGYKASRISFADQMYQ--DKIGKGAKVQD 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-----RGIILTRDGRFKVTDDGSLV 115 + K Y STG D AL+ +FA+ + TR G F++ D+G+L Sbjct: 59 AEKIYTPSGT---KSTGVAYDMALKDHGFFAVSNKTSTGTSETYYTRAGNFRMGDNGTLQ 115 Query: 116 SASGKYPVLDMASVPIQIPQ 135 A G V A PI Sbjct: 116 DAGGN-EVQGWAMSPITADD 134 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 138 EIFNVGEKGEIS--QKGK--VIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV 192 F+V + G I+ Q G +I + + + +G + ++ + P +++ Sbjct: 671 GDFSVDKTGLITMQQDGAKFIIGQVSVALFNNERGLLAVGDNLLKKTTESGEPTYNINND 730 Query: 193 T---VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE S AN + ++ + F + I + + I+ Sbjct: 731 RTSEIAGGNLELSGANLSESLVNLMVFQRAFEANAKSITTADALLTTLIQ 780 >gi|229172400|ref|ZP_04299959.1| Flagellar hook protein FlgE [Bacillus cereus MM3] gi|228610871|gb|EEK68134.1| Flagellar hook protein FlgE [Bacillus cereus MM3] Length = 441 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 32/202 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N T G++ K F +++ S+ Sbjct: 1 MIKALYTSITGMSATQNALSVTSNNIANAQTAGYKKQKAIFDDLLYNNTVGSRGDGSYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + GS TG +++ A+EG+ F + G + TR G F Sbjct: 61 TNPKSIGNGLKFSGTATDFSDGSITLTGEKMETAIEGNGLFLVGDRNGGNVEYTRKGSFG 120 Query: 108 VTDDGSLVSASGKYPVLDMASVP-------------IQIPQKDEIFNVGEKGEISQKGKV 154 V+ D + +A+G VL P I++P I G ++ K + Sbjct: 121 VSADNFI-TATGGQYVLGYGVKPGTQEVDFSSQPSAIKLPVGTAI-----GGSVTDKATL 174 Query: 155 IATMGLYSVDMSQGFVRRENSG 176 + D+S F ++ G Sbjct: 175 GGNLSRNQSDLSTDFTIYDDEG 196 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 13/125 (10%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRREN-SGIS 178 D+A P I +++ + G + G KV+ + + + S G ++ N + I+ Sbjct: 317 DVAGRPAAI---ANDYSISDGGFVMMRYSDGSMKVVGQLAVATFPNSGGLMKSGNGNYIA 373 Query: 179 PNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 P ++G V+ G E SN + E ++ + F +I +++ + Sbjct: 374 TPSSGIPAIGVAGENGAGNVRGGAKESSNVDLSVEFVDLMLYQRGFQGNAKVIKVSDEVL 433 Query: 235 LEAIR 239 E + Sbjct: 434 NEVVN 438 >gi|94267501|ref|ZP_01290900.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451978|gb|EAT02688.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 1069 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFV 59 +S G++ + ++ + DN++N +T + + F +V+ A Q V Sbjct: 5 SSLYAGISGLSTMGNSMNVLGDNIANVNTTAYNASRATFQDVLSQSVATSAGSAQVGRGV 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR---GIILTRDGRFKVTDDGSLVS 116 GSF ST T D A+ G+ +F + + TR G F+ G+L++ Sbjct: 65 TLTTVDGLFAQGSFESTSTATDMAIGGEGFFMMRGSGSAEADMFTRAGEFRFDTQGNLIN 124 Query: 117 ASGKY 121 +G + Sbjct: 125 PAGHF 129 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG 191 + +V G I+ G+V+ A + L QG + + + P+ G Sbjct: 955 QSVSVDTAGIITGNYSNGQVLMRAQVALADFANLQGLHKVGGNIFRATTQSGAPVTGQPG 1014 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E +MI + F + + +I ++ + E I Sbjct: 1015 TNGLGEIAPNSLEQSNVDLGTEFVKMITTQRGFQANSKMITTTDEMLNELIN 1066 >gi|218235227|ref|YP_002366439.1| flagellar hook protein FlgE [Bacillus cereus B4264] gi|228907387|ref|ZP_04071245.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 200] gi|228938867|ref|ZP_04101467.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964737|ref|ZP_04125844.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar sotto str. T04001] gi|228971748|ref|ZP_04132369.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978357|ref|ZP_04138734.1| Flagellar hook protein flgE [Bacillus thuringiensis Bt407] gi|218163184|gb|ACK63176.1| flagellar hook protein [Bacillus cereus B4264] gi|228781374|gb|EEM29575.1| Flagellar hook protein flgE [Bacillus thuringiensis Bt407] gi|228787838|gb|EEM35796.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794987|gb|EEM42486.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar sotto str. T04001] gi|228820716|gb|EEM66741.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228852248|gb|EEM97044.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 200] gi|326939367|gb|AEA15263.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar chinensis CT-43] Length = 407 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 26/174 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNV-GEKGEI 148 ++ D + + G+Y L P+QIP I + KG I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTI 174 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + ++ +G V+ G E +N + E Sbjct: 316 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KVRGGAQEGANVDLSVE 374 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 375 FVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 404 >gi|206970889|ref|ZP_03231841.1| flagellar hook protein FlgE [Bacillus cereus AH1134] gi|228920464|ref|ZP_04083809.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229178162|ref|ZP_04305533.1| Flagellar hook protein flgE [Bacillus cereus 172560W] gi|206734525|gb|EDZ51695.1| flagellar hook protein FlgE [Bacillus cereus AH1134] gi|228605292|gb|EEK62742.1| Flagellar hook protein flgE [Bacillus cereus 172560W] gi|228839094|gb|EEM84390.1| Flagellar hook protein flgE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 407 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 26/174 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNV-GEKGEI 148 ++ D + + G+Y L P+QIP I + KG I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTI 174 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + T ++ +G V+ G E +N + E Sbjct: 316 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGTSGQNGAG-KVRGGAQEGANVDLSVE 374 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 375 FVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 404 >gi|229069305|ref|ZP_04202595.1| Flagellar hook protein flgE [Bacillus cereus F65185] gi|229078936|ref|ZP_04211488.1| Flagellar hook protein flgE [Bacillus cereus Rock4-2] gi|228704350|gb|EEL56784.1| Flagellar hook protein flgE [Bacillus cereus Rock4-2] gi|228713792|gb|EEL65677.1| Flagellar hook protein flgE [Bacillus cereus F65185] Length = 407 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 26/174 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNV-GEKGEI 148 ++ D + + G+Y L P+QIP I + KG I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTI 174 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + T ++ +G V+ G E +N + E Sbjct: 316 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGTSGQNGAG-KVRGGAQEGANVDLSVE 374 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 375 FVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 404 >gi|90422390|ref|YP_530760.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisB18] gi|90104404|gb|ABD86441.1| flagellar basal body FlaE [Rhodopseudomonas palustris BisB18] Length = 419 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A A ++ ++DN++N+ TVG++T F +V + + V + Sbjct: 6 ALSSAISALSAQSSAMAMISDNIANSQTVGYKTTSASFQALVTSSSSATTYSSGGVTTLS 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASGK 120 E G +T + D + G+ +F + + + TR G F + D G LVS+ G Sbjct: 66 RSNISEQGLLTTTTSATDIGISGNGFFPVTTALTGGSTLYTRSGSFTIDDSGYLVSSGGA 125 Query: 121 YPVL 124 Y + Sbjct: 126 YLLG 129 >gi|332088750|gb|EGI93862.1| flagellar hook protein flgE [Shigella boydii 5216-82] Length = 401 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLYVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 284 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 343 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 344 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 399 >gi|315125984|ref|YP_004067987.1| flagellar hook protein FlgE [Pseudoalteromonas sp. SM9913] gi|315014498|gb|ADT67836.1| flagellar hook protein FlgE [Pseudoalteromonas sp. SM9913] Length = 442 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + FNIGL+ + + L ++N++N+ T G++ +F+ V + Q+ + Sbjct: 1 MSMFNIGLSGLKSTQAGLEVTSNNIANSGTAGYKNNTAEFAAVY-----NGSQRGGVKVA 55 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 + G + TG LD A++G +FA+ T+ G+F++ +D ++V+A+G Sbjct: 56 NVKEDFVTGGEIVRTGNALDIAIDGQGFFAISENGRTAYTQAGQFQLDNDLNVVNANGG 114 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 10/106 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-----EDL 189 V + G + + K+ + L S G + N+ E Sbjct: 331 VKVEDDGRVFATFTNGESKLQGQVVLASFANVDGLEQGSNTVWYQTEESGSALYGEPESG 390 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S + G SN + ++ ++ Q + + I ++ M Sbjct: 391 SLGKLLSGSFMGSNVDISEQLVGLMSFQQNYQANAKTISSADEMMQ 436 >gi|163939559|ref|YP_001644443.1| flagellar hook protein FlgE [Bacillus weihenstephanensis KBAB4] gi|163861756|gb|ABY42815.1| protein of unknown function DUF1078 domain protein [Bacillus weihenstephanensis KBAB4] Length = 407 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 26/174 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNV-GEKGEI 148 ++ D + + G+Y L P+QIP I + +G I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSQGTI 174 Score = 55.0 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + ++ +G ++ G E +N + E Sbjct: 316 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KIRGGAQEGANVDLSVE 374 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 375 FVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|229132566|ref|ZP_04261415.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST196] gi|228650912|gb|EEL06898.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST196] Length = 407 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGSKGDDKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNTEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+QIP I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPANAATGEVDLSGIPGPLQIPMGSAIGGIRTSKGVVGGNIPA 180 Query: 151 KGKVIAT 157 K I Sbjct: 181 DAKQITQ 187 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G V+ E +N + Sbjct: 313 KAAGQLAVAMFPNEGGLMKNGNGNYTATNTTGILAMGVSGQNGAG-KVRGSAQEGANVDL 371 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 372 SVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|254511352|ref|ZP_05123419.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium KLH11] gi|221535063|gb|EEE38051.1| flagellar hook protein FlgE [Rhodobacteraceae bacterium KLH11] Length = 439 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+AA A RL+T++DN++N+ T G++ ++ F +V + + V Sbjct: 11 ISSSLNAGVAALKANANRLATISDNIANSSTFGYKRVETDFHSMVTSGQGGSYSA-GGVR 69 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE-------SPRGIILTRDGRFKVTDDGS 113 + + L + GS ++T D A+ G + ++LT G F+ ++G Sbjct: 70 TTSQRLIDQRGSLVTTNNSTDLAVRGRGMLPVRPSSQIAAGSNEMMLTTTGSFRTNEEGY 129 Query: 114 LVSASGKYPVLDMASVPIQIPQ 135 LV+ SG + A+ IP Sbjct: 130 LVTQSGLVLLGWRAAADGSIPS 151 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 17/144 (11%) Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDE------IFNVGEKGEISQ-----KGKVIATMGL 160 G L A G + D P+ I + V E G + + + + L Sbjct: 294 GQLGDADGITQLSDTF-APVSITRDGSAVGTMTSVQVDENGYVYAFYDTGVSRRMFQIPL 352 Query: 161 YSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 V G ++ +P+ + + E+S + E+ MI Sbjct: 353 ADVPNPNGLTALDSQTYAPSRDSGTFFLWNAGEGPTGDLVSFAREESTTDVATELTSMIQ 412 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + ++S +I ++ + E Sbjct: 413 TQRAYSSSAKVIQTVDEMLQETTN 436 >gi|41351258|emb|CAE47476.1| flagellar hook protein [Helicobacter hepaticus] Length = 693 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 21/154 (13%) Query: 15 LEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--------KNDIDQKISF-----VAS 61 + L ++N++N +TVGF+ + F +++ I KN + + F V Sbjct: 1 HQIALDVESNNIANVNTVGFKYSRASFVDMLSQIKLIATSPYKNGLGGQNDFSVGLGVGI 60 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVSASG 119 G+ +T + D A+EGD +F + RG TR+G F +G+LV+ +G Sbjct: 61 DATTKVFSQGNTQNTDVKTDVAIEGDGFFIISPDRGTTHNYTRNGEFLFDANGNLVT-TG 119 Query: 120 KYPVLDMASVPIQIPQKDEI-----FNVGEKGEI 148 Y V P++ + + F V G + Sbjct: 120 GYVVQGWVRPPLEAAESGTMSDFDFFRVDNTGPV 153 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 5/82 (6%) Query: 155 IATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGVTVKRGF----LEDSNANSMYE 209 +A + L + + G + P+ + + G LE SN + Sbjct: 612 LAQVALANFANNAGLQAEGGNVYSQTGNSGEPMVGAANTGRRGGVSGSKLEMSNVDLSRS 671 Query: 210 MGQMIHLTQKFNSITTLIDENE 231 + Q+I + + F + + + ++ Sbjct: 672 LTQLIVVQRGFQANSKAVTTSD 693 >gi|333008278|gb|EGK27752.1| flagellar hook protein flgE [Shigella flexneri K-272] gi|333019768|gb|EGK39040.1| flagellar hook protein flgE [Shigella flexneri K-227] Length = 390 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+F + ++ +L++ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFMLDENRNLLNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 12/107 (11%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 T G T+ G LE SN + E+ MI + + S I Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKT 390 >gi|56551507|ref|YP_162346.1| hypothetical protein ZMO0611 [Zymomonas mobilis subsp. mobilis ZM4] gi|56543081|gb|AAV89235.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 411 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 25/190 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS-FVASG 62 +F L A + LS ++N++N+ + GF+ F E+V Q I Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPLASGQNIGQGTRLR 61 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVSASG 119 GS +T LD + GD +F ++S I LTRDG F + ++V++ G Sbjct: 62 ATIQDFTSGSMKTTNRALDMMVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVTSDG 121 Query: 120 KY--------------------PVLDMASVPIQIPQKDEIFNV-GEKGEISQKGKVIATM 158 Y + +P ++ ++ GE Q G +A Sbjct: 122 HYLQVYATTNSGNIYNNGETGSATGGRVVKNLTLPSYEDQVSISSATGETVQVGNNLART 181 Query: 159 GLYSVDMSQG 168 G +V + G Sbjct: 182 GDVTVTGTNG 191 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 11/116 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS-----GISPNIPPTPLE 187 +VG G+++ ++ + L V+ G N+ G S ++ + Sbjct: 297 SNISVGTDGKVTATFANGNQYILGAVALGDVNNRNGLHSTGNANWTVTGTSGSLNYREAD 356 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +V+ G LE SN + E+ +I + F + + I + M+ + NI S Sbjct: 357 TSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAI-STDNQMVSYVMNIQS 411 >gi|292670487|ref|ZP_06603913.1| flagellar basal body and hook protein [Selenomonas noxia ATCC 43541] gi|292647897|gb|EFF65869.1| flagellar basal body and hook protein [Selenomonas noxia ATCC 43541] Length = 506 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 18/184 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------------FVASGKEYL 66 + + +N++N +T GF+ +V F +++ + + V+ G Sbjct: 1 MDVIGNNIANVNTTGFKAGRVTFEDMLSQTLSGAASPGTTIGGTNPKQVGLGVSVGGIDT 60 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD- 125 GS STG D AL G+A F ++ TR+G F+ G+ V S V Sbjct: 61 IFSDGSVQSTGKNTDLALTGNALFVVKRGDQTYYTRNGAFEFDAKGNYVLPSSGLHVQGW 120 Query: 126 ----MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 + + E + G I + ++D + + + Sbjct: 121 MNKTTNNSKVSTEGAAENIVIDA-GRIMGPEQTDTVSYSENLDANTPIITGYSFSDPRTT 179 Query: 182 PPTP 185 PPTP Sbjct: 180 PPTP 183 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 11/112 (9%) Query: 139 IFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPT------PLE 187 +V G I+ + A +G+ G + S + Sbjct: 392 SVSVDSTGVITGTYTNGVRRAEAQIGVAKFSNPSGLTKIGGSLYQESNNSNSKVVRAQTV 451 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G + LE SN + + MI + F S + +I ++ + I Sbjct: 452 ESTGAKITPSALEMSNVDIADQFSDMIITQRGFQSNSKVITVGDEMLETLIN 503 >gi|257484946|ref|ZP_05638987.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 120 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSAGAMVETGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 >gi|259907634|ref|YP_002647990.1| Flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|224963256|emb|CAX54740.1| Flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|283477476|emb|CAY73392.1| flgE [Erwinia pyrifoliae DSM 12163] Length = 410 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 11/148 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ GL+ A L V +N++N+ T GF+ + F+++ + V Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKAGSIGFADIFA------GAQGMGVQVAG 55 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 + + G TG +D + G+ +F L G +R+G+F +G + + + Sbjct: 56 SSQNFKDGGLTGTGRNMDMGINGNGFFRLMDEAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 123 VLD---MASVP-IQIPQKDEIFNVGEKG 146 + + P IQ + + G Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQIDKTG 143 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 12/112 (10%) Query: 139 IFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLE 187 F +G+ GEI+ ++IA + L + G + N+ +I T Sbjct: 298 NFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNNTWVESPQSGGSIIGTAGT 357 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE+SN + EM MI + + S + I + + + Sbjct: 358 GSFG-SLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVN 408 >gi|310764860|gb|ADP09810.1| Flagellar hook protein FlgE [Erwinia sp. Ejp617] Length = 410 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 11/148 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ GL+ A L V +N++N+ T GF+ + F+++ + V Sbjct: 2 SFSQGLSGLNAAASALDVVGNNIANSQTFGFKAGSIGFADIFA------GAQGMGVQVAG 55 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASGKYP 122 + + G TG +D + G+ +F L G +R+G+F +G + + + Sbjct: 56 SSQNFKDGGLTGTGRNMDMGINGNGFFRLMDEAGQAYYSRNGQFDTDVNGYITNLTNGLR 115 Query: 123 VLD---MASVP-IQIPQKDEIFNVGEKG 146 + + P IQ + + G Sbjct: 116 LTGYQATGTPPAIQAGAAVAPIQIDKTG 143 Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 10/111 (9%) Query: 139 IFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSG-ISPNIPPTPLEDLSGV 192 F +G+ GEI+ ++IA + L + G + N+ + + ++G Sbjct: 298 NFQIGDNGEITANYDNGEKQLIAQVVLANFANPGGLQQNGNNTWVESPQSGGSIIGMAGT 357 Query: 193 ----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE+SN + EM MI + + S + I + + + Sbjct: 358 GSFGSLTGGALENSNVDLGSEMVNMIVYQRNYQSNSQTIKTQSEMLQTLVN 408 >gi|144900453|emb|CAM77317.1| Flagellar hook protein FlgE [Magnetospirillum gryphiswaldense MSR-1] Length = 693 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ + + ++DN+SN +TVG++ +V F +V + V S Sbjct: 6 ALFSGVSGLASQSSAMGAISDNISNVNTVGYKGARVNFQTLVTKQTSITAYSPGGVQSKP 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL------ESPRGIILTRDGRFKVTDDGSLVSA 117 G +T + D + G +F + E+ TR G FKV +G L + Sbjct: 66 RQGVDVQGLLQATNSSTDIGMSGQGFFIVNEAARPENGDMFAYTRAGSFKVDSEGYLQNV 125 Query: 118 SGKY 121 SG Y Sbjct: 126 SGWY 129 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGV- 192 ++G G ++ + + + + + G N I + P +G Sbjct: 581 VSIGSDGIVTALFDNGVTRAVFQIPVATFVNPNGMQSLSGNVFIGTDFSGEPTLRGAGSA 640 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE S + E MI + +++ +I ++ + E +R Sbjct: 641 GAGQINASSLEASTVDIGEEFTTMIVTQRAYSAAAKIITTADEMLDELVR 690 >gi|229096239|ref|ZP_04227212.1| Flagellar hook protein flgE [Bacillus cereus Rock3-29] gi|228687199|gb|EEL41104.1| Flagellar hook protein flgE [Bacillus cereus Rock3-29] Length = 407 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 26/174 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ + Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKSDGKYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNV-GEKGEI 148 ++ D + + G+Y L P+QIP I + KG I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTI 174 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + ++ +G V+ G E +N + E Sbjct: 316 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KVRGGAQEGANVDLSIE 374 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 375 FVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 404 >gi|229029434|ref|ZP_04185517.1| Flagellar hook protein flgE [Bacillus cereus AH1271] gi|228731893|gb|EEL82792.1| Flagellar hook protein flgE [Bacillus cereus AH1271] Length = 409 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 30/201 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGSKGDNKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSAGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 ++ + + + G+Y L P+QIP I G + KG + Sbjct: 121 ISSNYYITNTEGQYVFAYPANAATGEVDLSGIPGPLQIPMGTAI-----GGIQTTKGTIK 175 Query: 156 ATMGLYSVDMSQGFVRRENSG 176 + + ++Q +++G Sbjct: 176 GNIPVNESKITQDLPFYDDAG 196 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + ++ +G V+ G E +N + E Sbjct: 318 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KVRGGAQEGANVDLSVE 376 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 377 FVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 406 >gi|227328338|ref|ZP_03832362.1| flagellar hook protein FlgE [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 400 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 13/161 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ TVGF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ S+ +LD A+ G ++ L+ G +R+G+F + ++V+A G Sbjct: 58 -LQDFGNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNG-RNIVNAQGMQL 115 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 YPV + P D + G++ IA++ Sbjct: 116 TGYPV--AGTPPTVQTGADPVPLTVPDGDMLASATTIASIK 154 Score = 63.5 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 10/115 (8%) Query: 134 PQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLE 187 P F + + G I + + + L S +G ++ S + Sbjct: 283 PGSLTGFAINDDGTIEGNYSNGQKQALGQILLASFANPEGLSPEGDNAWSETASSGQAVV 342 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 L+G + E SN + E+ MI + + S I + + + Sbjct: 343 GLAGTGSLGKLIGKSTESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLV 397 >gi|187734244|ref|YP_001880752.1| flagellar hook protein FlgE [Shigella boydii CDC 3083-94] gi|187431236|gb|ACD10510.1| flagellar hook protein FlgE [Shigella boydii CDC 3083-94] Length = 402 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N+ N+ T GF++ F+++ K + K++ + Sbjct: 2 AFSQAVSGLNAAATNLDVIGNNIVNSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P I Q N+ Sbjct: 117 TGYPATGTPPTIQQGANPTNIS 138 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIP 182 P + + + G + +++ +++ + L + ++G ++ + Sbjct: 285 PGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWSATQSSGVALL 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNFG-TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|289523565|ref|ZP_06440419.1| flagellar hook protein FlgE [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503257|gb|EFD24421.1| flagellar hook protein FlgE [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 618 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 12/124 (9%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY------------L 66 L V +N++N +T+GF+ V F +++ + Sbjct: 2 LDVVGNNIANVNTMGFKKSTVTFQDLLYETSKGATAPRENIGGVNPMQIGLGTTVAAVET 61 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 G TG D A++GD ++ L + +R G F + +G++V + Y ++ Sbjct: 62 IHSQGPLQYTGNRTDVAIQGDGYYVLNDGAQNVYSRAGNFVLDGNGNIVQSGTGYTLMGY 121 Query: 127 ASVP 130 P Sbjct: 122 KMSP 125 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGE---ISQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPP------TPL 186 + F++ G I G+ A T+ L G + + P TP Sbjct: 504 QDFSIASDGTVMGIYSNGRNSALYTLSLALFSNPSGLEKIGMTAFIPTANSGLPQVVTPK 563 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +G ++ G LE +N + E ++I + F + +I +++ + E I Sbjct: 564 EGGAG-SLAGGNLEMANVDLAEEFSRLIIAQRGFQANARVITTSDQVLDELIN 615 >gi|87307400|ref|ZP_01089545.1| flagellar hook protein FlgE [Blastopirellula marina DSM 3645] gi|87290140|gb|EAQ82029.1| flagellar hook protein FlgE [Blastopirellula marina DSM 3645] Length = 929 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 39/229 (17%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFS------EVVGAIKNDIDQKIS------FV 59 A E ++ + +N++N+ TVGF+ F+ +G+ ++ D + V Sbjct: 1 MTAAETQIDVLGNNLANSQTVGFKASDALFANQFLQTRGLGSKPSETDGGTNPRQVGLGV 60 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSAS 118 + + G+ + D A++GD +F ++ G TR+G FK + LV+ Sbjct: 61 MVAEITPNFTQGTIEVSSNPSDLAIQGDGFFIVQGNNGERLYTRNGIFKTNSNNELVTIG 120 Query: 119 G----------KYPVLDMASVPIQIPQKDEIF-----NVGEKGEISQKGKV--IATMGLY 161 G + + + VP+ IP NV +G + G + +A + Sbjct: 121 GERVLGFGIDENFNIQETQLVPLTIPLGAAAVAKATENVYLEGTLPATGDLATVAQVIES 180 Query: 162 SVDMSQGFVRRENSGISPNIPPTPLEDLSGV---------TVKRGFLED 201 ++ + R + SG S + TP + S +V +G E Sbjct: 181 AILGNSAIPRPDVSGASAIVAETPDDSSSTTDSVSTPGIGSVVQGQTEG 229 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSG 191 F + E G I S + + + L G +R N+ + + P++ +G Sbjct: 815 NSFIISEDGIIRGVFSSGVDRDLGMIQLARFANPSGLEQRGNNLFAAGVNSGLPVQGDAG 874 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G +E SN + + +I + ++ + +I ++ E + Sbjct: 875 EEGIGSIIAGAVELSNTDIGGNLIDLILASTQYRGSSRIITTAQQLFDELLN 926 >gi|218896686|ref|YP_002445097.1| flagellar hook protein [Bacillus cereus G9842] gi|228900335|ref|ZP_04064565.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 4222] gi|218545583|gb|ACK97977.1| flagellar hook protein [Bacillus cereus G9842] gi|228859370|gb|EEN03800.1| Flagellar hook protein flgE [Bacillus thuringiensis IBL 4222] Length = 407 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 26/174 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNV-GEKGEI 148 ++ D + + G+Y L P+QIP I + KG I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTI 174 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + ++ +G V+ G E +N + E Sbjct: 316 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KVRGGAQEGANVDLSVE 374 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 375 FVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 404 >gi|237799636|ref|ZP_04588097.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022491|gb|EGI02548.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. oryzae str. 1_6] Length = 121 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTRDGRFKVTDDGSLVSASG 119 S + G+ + TG ELD A++GD W A+++P G TR + G L SG Sbjct: 59 SERPGTDFSAGAMVQTGRELDIAVKGDGWIAVQTPDGGEAYTRSSGMNIDALGVLRDGSG 118 >gi|308186393|ref|YP_003930524.1| Flagellar hook protein FlgE [Pantoea vagans C9-1] gi|308056903|gb|ADO09075.1| Flagellar hook protein FlgE [Pantoea vagans C9-1] Length = 418 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 7/139 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYP 122 + G+ +T LD AL G+ +F + G+ +R+G+ + + +LV+ G Sbjct: 58 -IQNFNDGATTTTSRGLDVALSGNGFFRMTDSSGGVFYSRNGQLTLDANRNLVNTQGLNV 116 Query: 123 VL-DMASVPIQIPQKDEIF 140 + P I Sbjct: 117 TGYPASGSPATIQAGANPV 135 Score = 73.9 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + G I+ QK +++ + L S +G + ++ + + Sbjct: 301 PGDLTSYAINDDGTITGSYSNQKTQLLGQIVLSSFSNPEGLESKGDNVWQASSASGQAAI 360 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+ ++ G LE SN + E+ MI + + + I ++ + + Sbjct: 361 GLANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVN 416 >gi|213026536|ref|ZP_03340983.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 110 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ F+++ K + K++ + Sbjct: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFAGSKVGLGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ Sbjct: 60 ---DFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVN 110 >gi|229166594|ref|ZP_04294346.1| Flagellar hook protein flgE [Bacillus cereus AH621] gi|228616848|gb|EEK73921.1| Flagellar hook protein flgE [Bacillus cereus AH621] Length = 407 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 26/174 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNV-GEKGEI 148 ++ D + + G+Y L P+QIP I + +G I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSQGTI 174 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + ++ +G ++ G E +N + E Sbjct: 316 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KIRGGAQEGANVDLSVE 374 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 375 FVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|94263193|ref|ZP_01287010.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456411|gb|EAT06531.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 619 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 75/205 (36%), Gaps = 10/205 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 G++ ++ ++ + DN++N +T +++ + F ++ + + + + Sbjct: 5 NMIFNGVSGLNSMSGNMAVMGDNIANVNTTSYKSSQASFQNILTSSQERFGEIGNGSQVA 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFK-----VTDDGS-- 113 + G +T D A+ G +F + +P ++ TRDG+FK +T +G Sbjct: 65 AITKNFRPGDLETTNQSTDMAISGKGFFMVNNPLADEMLYTRDGQFKLEKSAITPEGYYN 124 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 L + +G + V + E + G V M L S + Sbjct: 125 LATPAG-HLVQGRNLAANGGADNLGDILIQEVSDPRATGNVSLAMNLQSKPGREDAQPLH 183 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGF 198 +S P + T+ + F Sbjct: 184 SSWDGAAAEPLAADRYDYRTIMQAF 208 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG 191 + ++ G + +Q+ A + L +G N+ + + P ++G Sbjct: 506 QDISINPDGTMVGRYSNQQSFEQAQVMLADFADYRGLEPTSHNAYKATAMAGEPTIGVAG 565 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V LE SN + E +I + F + + I ++ +R Sbjct: 566 EGSFGKVLGNTLEGSNVDLGREFSDLIMTQRIFQANSKSITTADEVFDTLMR 617 >gi|149189836|ref|ZP_01868116.1| flagellar hook protein E [Vibrio shilonii AK1] gi|148836322|gb|EDL53279.1| flagellar hook protein E [Vibrio shilonii AK1] Length = 398 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I L+ A +L+T++ N++N T GF+ + +FS V N + VAS Sbjct: 2 SFDIALSGLDATNTQLNTISHNIANASTYGFKEARTEFSAVY----NGMQAGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G+ +F + G + TR G F D +V +G Sbjct: 58 QNFDKN-GSVSGTGRAMDLAINGNGFFVTKDHMGQTLYTRAGVFGTDKDNYVVGNTG 113 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 11/117 (9%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPT 184 +++ +F G+ +G+V+ L + QG + + G + T Sbjct: 287 VRVEDNGMVFATYTNGQSQLQGQVV----LANFANPQGLAKTNGTAWTQSYGSGAPVMGT 342 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P + G + G LE SN + E+ ++ + + + I ++K + Sbjct: 343 PGSGVLGD-LTPGALEGSNVDLTSELVNLMTAQRNYQANAKTISTSDKLTQALFNAV 398 >gi|229102353|ref|ZP_04233061.1| Flagellar hook protein flgE [Bacillus cereus Rock3-28] gi|229115194|ref|ZP_04244604.1| Flagellar hook protein flgE [Bacillus cereus Rock1-3] gi|228668334|gb|EEL23766.1| Flagellar hook protein flgE [Bacillus cereus Rock1-3] gi|228681000|gb|EEL35169.1| Flagellar hook protein flgE [Bacillus cereus Rock3-28] Length = 407 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 26/174 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNV-GEKGEI 148 ++ D + + G+Y L P+QIP I + KG I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGTI 174 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + ++ +G V+ G E +N + E Sbjct: 316 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KVRGGAQEGANVDLSVE 374 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 375 FVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 404 >gi|42780846|ref|NP_978093.1| flagellar hook protein FlgE [Bacillus cereus ATCC 10987] gi|42736766|gb|AAS40701.1| flagellar hook protein FlgE, putative [Bacillus cereus ATCC 10987] Length = 407 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFK 107 + + V G+ TG + A+EG+ +F + + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFT 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+Q+P I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPADPSTGNVDLSGIPGPLQVPMGSAIGGIRTSKGVVGGNIPA 180 Query: 151 KGKVIAT 157 K I Sbjct: 181 DAKQITQ 187 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G V+ E +N + Sbjct: 313 KAAGQLAVAMFPNEGGLMKTGNGNYTATNTTGILAMGVSGQNGAG-KVRGSAQEGANVDL 371 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 372 SVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|220922287|ref|YP_002497589.1| flagellar basal body FlaE domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219946894|gb|ACL57286.1| flagellar basal body FlaE domain protein [Methylobacterium nodulans ORS 2060] Length = 456 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 12/154 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A L ++ N++N T G+R I F +++ S VA+ Sbjct: 5 SALQTAVSGLKAQAFSLDNISGNIANAQTTGYRRIDTTFVDLLAEQPVKSQTSGS-VAAY 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPR-----------GIILTRDGRFKVTDD 111 + + G+ STG + AL GD +F + P + TR G F V D Sbjct: 64 SQLTNTLQGNLTSTGIGTNMALNGDGFFVVRIPGTDTAGQRSFSSENLYTRRGDFTVDKD 123 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 G LV+ +G Y V D + + + Sbjct: 124 GFLVNGAGSYLVGQSLDPLTGQTTGDGVIKISNQ 157 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 34/213 (15%) Query: 44 VVGAIKNDIDQKISF-VASGKEYLSKEVGSFI-STGTELDFALEGDAWFALESPRGIILT 101 + A +N S G + G TG L A+ + G L Sbjct: 258 LFYAAQNGTTSASSTWKNVGTAFTFNASGQLTAPTGGTL--AIPN------VTVDGTSL- 308 Query: 102 RDGRFKVTDDGSLVSASGKYPVLDMASVPIQIP---------QKDEIFNVGEKGEISQ-- 150 G + + SG A+ + V G+I+ Sbjct: 309 --GTLTLD------TGSGGLTQYGAANGQVTTNTLQQNGYASGTLTALAVTSDGKITGTY 360 Query: 151 ---KGKVIATMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +A +G+ + + PL L G TV G +E SN ++ Sbjct: 361 SNGNDLALAQVGVVRFNAPDALRAESLGNYARTADSGEPLIGLKGATVVGGNVEQSNTDT 420 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++I Q +++ T ++ ++ M + I Sbjct: 421 ANEFSKLIITQQAYSANTRVMSTAQQMMTDLIN 453 >gi|47566136|ref|ZP_00237174.1| flagellar hook protein flgE, putative [Bacillus cereus G9241] gi|47557053|gb|EAL15383.1| flagellar hook protein flgE, putative [Bacillus cereus G9241] Length = 409 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 30/201 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGNYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEKGEISQKGKVI 155 ++ D + + G+Y L P+QIP I G + KG + Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAI-----GGIQTTKGTIK 175 Query: 156 ATMGLYSVDMSQGFVRRENSG 176 + + ++Q +++G Sbjct: 176 GNIPVNESKITQDLPFYDDAG 196 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYE 209 + + G ++ N + ++ +G ++ G E +N + E Sbjct: 318 GQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KIRGGAQEGANVDLSVE 376 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + F +I +++ + E + Sbjct: 377 FVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 406 >gi|229058387|ref|ZP_04196771.1| Flagellar hook protein flgE [Bacillus cereus AH603] gi|228719896|gb|EEL71486.1| Flagellar hook protein flgE [Bacillus cereus AH603] Length = 407 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKADDKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKLSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFA 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+QIP I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPANAATGEVDLSGIPGPLQIPMGTAIGGIRTSKGVVGGNIPA 180 Query: 151 KGKVIAT 157 K IA Sbjct: 181 DAKAIAQ 187 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 32/93 (34%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G ++ G E +N + Sbjct: 313 KAAGQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KIRGGAQEGANVDL 371 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 372 SVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|217959237|ref|YP_002337785.1| flagellar hook protein FlgE [Bacillus cereus AH187] gi|229138454|ref|ZP_04267043.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST26] gi|217065278|gb|ACJ79528.1| flagellar hook protein [Bacillus cereus AH187] gi|228644991|gb|EEL01234.1| Flagellar hook protein flgE [Bacillus cereus BDRD-ST26] Length = 407 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFK 107 + + V G+ TG + A+EG+ +F + + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFT 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+Q+P I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPADSSTGNVDLSGIPGPLQVPMGSAIGGIRTSKGVVGGNIPA 180 Query: 151 KGKVIAT 157 K I Sbjct: 181 DAKQITQ 187 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G V+ E +N + Sbjct: 313 KAAGQLAVAMFPNEGGLMKTGNGNYTATNTTGILAMGVSGQNGAG-KVRGSAQEGANVDL 371 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 372 SVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|260779347|ref|ZP_05888239.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] gi|260605511|gb|EEX31806.1| flagellar hook protein FlgE [Vibrio coralliilyticus ATCC BAA-450] Length = 362 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--- 119 + K GS TG +D A+ G+ +F + G + TR G F D ++ +G Sbjct: 58 QNFDKN-GSVSGTGRAMDLAINGNGFFVTKDSAGQLLYTRSGVFGTDKDNYVIGNTGAKL 116 Query: 120 -KYPVLDMAS 128 Y V + Sbjct: 117 QGYSVDGNNN 126 >gi|218528727|ref|YP_002419543.1| flagellar hook protein FlgE [Methylobacterium chloromethanicum CM4] gi|218521030|gb|ACK81615.1| flagellar basal body FlaE domain protein [Methylobacterium chloromethanicum CM4] Length = 403 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A R+STVA+N+ N T G++ +FS ++ + + V + Sbjct: 9 TGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRS 68 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-DDGSLVSASG----K 120 E G ST ++ D A++G+ +F + G +TR G F V G+LV+A G Sbjct: 69 VSEGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNLVNAGGFTLMG 128 Query: 121 YPVLDMASVPI 131 Y + + P+ Sbjct: 129 YSLANGTPNPV 139 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 19/166 (11%) Query: 84 LEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 + G A ++ P G G V G L SG + + A P G Sbjct: 244 ITGSASTLVKVPNG------GSIPVDLRG-LTQLSGNHNLSGTADG--SSPTSVSGTAFG 294 Query: 144 EKGEISQ---KGKVIATMG--LYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVT 193 E G + G A L V R + + + ++ Sbjct: 295 EDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTTSAESGDIQIGFAGQGGRGI 354 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K G LE SN + E+ MI + + + + + + + Sbjct: 355 LKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMN 400 >gi|21672604|ref|NP_660671.1| flagellar hook protein FlgE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008456|sp|Q8K9K6|FLGE_BUCAP RecName: Full=Flagellar hook protein flgE gi|21623235|gb|AAM67882.1| flagellar hook protein FlgE [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 409 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 + + + V++N++N T+GF++ F ++V S V + Sbjct: 7 INGLMINNDYIDIVSNNIANASTIGFKSSTPSFFDIVSHSFYSNQIIKSGVGISNLVQNF 66 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 G + T +LD + D +F + +G + TR+G F + + ++V+ G Y Sbjct: 67 SDGVLVQTNRDLDLGIVQDGFFRVLDSKGYVYYTRNGHFLLDKNKNIVNGQGMY 120 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-----PLEDL 189 F + GEI +++ + I + L + S S D Sbjct: 298 FEILNNGEIIGQYTNEEEQKIGQIFLAKFINPEKLKPESGSIWSATHESGQEKIGAAGDQ 357 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ FLE SN + E+ MI + + S ++ + + Sbjct: 358 GFGSLYTKFLESSNVDLNKELINMIIAQRNYQSSAQAFKTEDRIINTLVN 407 >gi|148558720|ref|YP_001258004.1| flagellar hook protein FlgE [Brucella ovis ATCC 25840] gi|148370005|gb|ABQ62877.1| flagellar hook protein FlgE [Brucella ovis ATCC 25840] Length = 377 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 24/124 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S + Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVL- 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 D A++G+ +F ++ P G TR G F +G LV+++G Sbjct: 62 -------------------TDLAIDGNGYFVVQGPGGSTYLTRAGSFVPDKNGDLVNSAG 102 Query: 120 KYPV 123 Y + Sbjct: 103 YYLL 106 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 132 QIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP---- 182 Q P + +VG G + + G KV+ + L +V + P+ Sbjct: 257 QAPSSIKGMDVGNDGAVVAVYENGTQKVLYRIPLANVASPDRMTVVSGNIFLPSAESGDV 316 Query: 183 --PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D G + G LE+SNA+ E+ MI + + + + + + M + Sbjct: 317 RLGFPQGDGMG-KIMSGTLEESNADIAQELTDMIEAQRSYTANSKVFQTGSELMDVLVN 374 >gi|94264101|ref|ZP_01287900.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455517|gb|EAT05707.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 1058 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFV 59 +S G++ + ++ + DN++N +T F + + F +V+ A + Q V Sbjct: 5 SSLYAGISGLSTMGNSMNVLGDNIANVNTTAFNSSRATFQDVLSQSVATSAGVAQVGRGV 64 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR---GIILTRDGRFKVTDDGSLVS 116 GSF ST T D A+ G+ +F + + + TR G F+ G+L S Sbjct: 65 TLTTVDGLFAQGSFESTSTATDMAIGGEGFFMMRASGSAEADMFTRAGEFRFDTQGNLTS 124 Query: 117 ASGKY 121 +G + Sbjct: 125 PAGHF 129 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG 191 + +V G I+ G+V+ A + L QG + + + P+ + G Sbjct: 944 QSVSVDTGGIITGNYSNGQVLMQAQVALADFANLQGLHKVGGNIFRATTQSGAPVTGMPG 1003 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E +MI + F + + +I ++ + E I Sbjct: 1004 TNGLGEIAPNSLEQSNVDLGTEFVKMITTQRGFQANSKMITTTDEMLNELIN 1055 >gi|304397204|ref|ZP_07379083.1| fagellar hook-basal body protein [Pantoea sp. aB] gi|304355353|gb|EFM19721.1| fagellar hook-basal body protein [Pantoea sp. aB] Length = 418 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 7/139 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ ++ A L + +N++N+ T GF++ + F+++ + K++ V Sbjct: 2 SFSQAVSGLGAASSNLDVIGNNIANSATAGFKSSTIAFADMFAGSNVGLGTKVAAV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYP 122 + G+ +T LD AL G+ +F + G+ +R+G+ + + +LV+ G Sbjct: 58 -IQNFNDGATTTTSRGLDVALSGNGFFRMTDSSGGVFYSRNGQLTLDANRNLVNTQGLNV 116 Query: 123 VL-DMASVPIQIPQKDEIF 140 + P I Sbjct: 117 TGYPASGSPATIQAGANPV 135 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G I+ QK +++ + L S +G + ++ + + Sbjct: 301 PGDLTSYAINNDGTITGSYSNQKTQLLGQIVLSSFSNPEGLQSKGDNVWQASSASGQAAI 360 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 L+ ++ G LE SN + E+ MI + + + I ++ + + Sbjct: 361 GLANTGTFGSLTAGALESSNVDMSKELVNMIVAQRNYQANAQTIKTQDQILNTLVN 416 >gi|188579925|ref|YP_001923370.1| flagellar hook protein FlgE [Methylobacterium populi BJ001] gi|179343423|gb|ACB78835.1| flagellar basal body FlaE domain protein [Methylobacterium populi BJ001] Length = 402 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A R+STVA+N+ N T G++ +FS ++ + + V + Sbjct: 9 TGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRS 68 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-DDGSLVSASG----K 120 E G ST ++ D A++G+ +F + G +TR G F V G+LV+A G Sbjct: 69 VSEGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNLVNAGGFTLMG 128 Query: 121 YPVLDMASVPI 131 Y + + P+ Sbjct: 129 YSLANGTPNPV 139 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 79/260 (30%), Gaps = 36/260 (13%) Query: 6 NIGLAAQLALEQRLSTVADNMS--------NTDTVGF--RTIKVKFSEVVGAIKNDIDQK 55 N+ + Q A +T++ N+S T T+G+ + + V + D+ Sbjct: 150 NVSVMGQEARPSTSATISGNLSFETPVYDPATSTIGYSKKNSLKVYDNVGQPVTLDVQMT 209 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFA------LESPRGIILTRDGRFKVT 109 + + + GT A +G+ ++ P G KV Sbjct: 210 KTAANTWSVKFFNPADATTPVGTAT-VAFDGNGKVTSGGSTLVQVPNGR------EIKVD 262 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATMG--LYSVD 164 G L SG + + A P GE G + G A L V Sbjct: 263 -LGGLTQLSGDHALSGTADG--SSPTSVSGTAFGEDGTVYAVYSDGTRKAAFKVPLADVA 319 Query: 165 MSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 R + + + ++ +K G LE SN + E+ MI Sbjct: 320 SPDNLSPRAGNVFTTSAESGDIQIGFAGAGGRGILKAGALEQSNVDVSTELTTMIESQTV 379 Query: 220 FNSITTLIDENEKSMLEAIR 239 + + + + + + + Sbjct: 380 YTANSKVFMTGNELLETLMN 399 >gi|229195966|ref|ZP_04322719.1| Flagellar hook protein flgE [Bacillus cereus m1293] gi|228587525|gb|EEK45590.1| Flagellar hook protein flgE [Bacillus cereus m1293] Length = 407 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFK 107 + + V G+ TG + A+EG+ +F + + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFT 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+Q+P I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPADPSTGNVDLTGIPGPLQVPMGSAIGGIRTSKGVVGGNIPA 180 Query: 151 KGKVIAT 157 K I Sbjct: 181 DAKQITQ 187 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G V+ E +N + Sbjct: 313 KAAGQLAVAMFPNEGGLMKTGNGNYTATNTTGILAMGVSGQNGAG-KVRGSAQEGANVDL 371 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 372 SVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|94266588|ref|ZP_01290271.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93452783|gb|EAT03318.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 619 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 69/190 (36%), Gaps = 17/190 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 G++ ++ ++ + DN++N +T +++ + F ++ + + + + Sbjct: 5 NMIFNGVSGLNSMSGNMAVMGDNIANVNTTSYKSSQASFQNILTSSQERFGEIGNGSQVA 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSASGK 120 + G +T D A+ G +F + +P ++ TRDG+FK+ ++ G Sbjct: 65 AITKNFRPGDLETTNQSTDMAISGKGFFMVNNPLADEMLYTRDGQFKLEKSA--ITPEGF 122 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Y + A +Q G +G + N ++ N Sbjct: 123 YNLATPAGHLVQ-------------GRNLAANGGADNLGDILIQEVSDPRATGNVSLAMN 169 Query: 181 IPPTPLEDLS 190 + P + + Sbjct: 170 LQSKPGREDA 179 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG 191 + +V G + +Q+ A + L +G N+ + + P ++G Sbjct: 506 QDISVKPDGTMVGRYSNQQSVEQAQVMLADFADYRGLEPTSHNAYKATAMAGEPTIGVAG 565 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V LE SN + E +I + F + + I ++ +R Sbjct: 566 EGSFGKVLGNTLEGSNVDLGREFSDLIMTQRIFQANSKSITTADEVFDTLMR 617 >gi|206974982|ref|ZP_03235897.1| flagellar hook protein FlgE [Bacillus cereus H3081.97] gi|206747001|gb|EDZ58393.1| flagellar hook protein FlgE [Bacillus cereus H3081.97] Length = 407 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFK 107 + + V G+ TG + A+EG+ +F + + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYTDGTITLTGGKTQAAMEGNGFFVVGDSKAGNMEFTRKGTFT 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+Q+P I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPADPSTGNVDLTGIPGPLQVPMGSAIGGIRTSKGVVGGNIPA 180 Query: 151 KGKVIAT 157 K I Sbjct: 181 DAKQITQ 187 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G V+ G E +N + Sbjct: 313 KAAGQLAVAMFPNEGGLMKTGNGNYTATNTTGILAMGVSGQNGAG-KVRGGAQEGANVDL 371 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 372 SVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVN 404 >gi|1294806|gb|AAB06803.1| hook protein [Treponema denticola] Length = 184 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 12/113 (10%) Query: 25 NMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------------FVASGKEYLSKEVGS 72 N++N +T GF+ +V F +++ + + + G+ Sbjct: 1 NVANVNTTGFKRGRVNFQDLISQQLSGAARPTEELGGVNPKEVGLGMMVASIDTIFTQGA 60 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 +TG D A++G+ +F L+ TR G F + +G+LV+ + V Sbjct: 61 LQTTGVNTDLAIQGNGFFILKDGEKTFYTRAGAFGIDKEGTLVNPANGMRVQG 113 >gi|241761151|ref|ZP_04759240.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374770|gb|EER64231.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 418 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG----AIKNDIDQKISFV 59 +F L A + LS ++N++N+ + GF+ F E+V A +I Q Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPLASAKNIGQGTRLR 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVS 116 A+ +++ S GS +T LD + GD +F ++S I LTRDG F + ++V+ Sbjct: 62 ATIQDFTS---GSMKTTNRALDMMVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVT 118 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDM 165 + G Y +++ G I G + G +V Sbjct: 119 SDGHYL---------------QVYATDNSGNIYTNGDTASATGGRTVKN 152 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 28/166 (16%) Query: 94 SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD------EIFNVGEKGE 147 + G T G ++ ASG S PIQ + V G+ Sbjct: 265 ASNGSTYT----------GKIMDASGAEDTTGKVS-PIQKDESGDTSSALSNIAVATDGK 313 Query: 148 ISQ---KGK--VIATMGLYSVDMSQGFVRRENS-----GISPNIPPTPLEDLSGVTVKRG 197 ++ G ++ + L V+ G N+ G S N+ + +V+ G Sbjct: 314 VTATFANGNQYILGAVALGDVNNRNGLHSTGNANWTVTGTSGNLNYREADTSGLGSVQSG 373 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 LE SN + E+ +I + F + + I + M+ + NI S Sbjct: 374 ALELSNIDLTQELVNLISEQRNFQANSKAI-STDNQMVSYVMNIQS 418 >gi|227112521|ref|ZP_03826177.1| flagellar hook protein FlgE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 400 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 13/160 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ TVGF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ S+ +LD A+ G ++ L+ G +R+G+F + ++V+A G Sbjct: 58 -LQDFGNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNG-RNIVNAQGMQL 115 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATM 158 YPV + P+ D + G++ A++ Sbjct: 116 TGYPV--AGTPPVVQTGADPVPLTVPDGDMLASQTTTASI 153 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 14/147 (9%) Query: 103 DGRFKVTDDGSLV-SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGK--VIA 156 +G F + GS+ + Y P F + + G I G+ + Sbjct: 254 NGVFTLNLTGSVQQNTEYSYKSPTQNG---FAPGSLTGFAINDDGTIEGSYSNGQKQPLG 310 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMG 211 + L S +G ++ S + L+G + E SN + E+ Sbjct: 311 QILLASFANPEGLSPEGDNAWSETASSGQAVVGLAGTGSLGKLIGKSTESSNVDLSKELV 370 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S I + + + Sbjct: 371 NMIVAQRNYQSNAQTIKTQDSILQTLV 397 >gi|254470088|ref|ZP_05083492.1| flagellar hook protein [Pseudovibrio sp. JE062] gi|211960399|gb|EEA95595.1| flagellar hook protein [Pseudovibrio sp. JE062] Length = 561 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 75/193 (38%), Gaps = 16/193 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF-VASG 62 + N A + L ++ N++N+ T G++ + FS++V + + +++S V + Sbjct: 6 AINSATTGLDAQSKALENISGNVANSSTTGYKRLDTSFSDLVSSTGSRQAEQVSGTVIAT 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGSLV 115 + G S A+ G +F + + G TR G F++ + +LV Sbjct: 66 SRATNYLSGDITSADRNTYMAINGPGYFLVTNRDGLGQETPESFYTRAGDFELDTERNLV 125 Query: 116 SASG----KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA-TMGLYSVDMSQGFV 170 +++G YP+ + + V + +Q I L S + + Sbjct: 126 NSAGYFLQGYPINPATGA---VSDRAVPIQVSDAPMPAQPSTQINYQANLPSKPTTANYQ 182 Query: 171 RRENSGISPNIPP 183 + + + S + P Sbjct: 183 KTDGAANSQYVDP 195 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 43/107 (40%), Gaps = 5/107 (4%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + +V +G + + K + + + + + R + + S + +G Sbjct: 452 QDVSVDAEGNVIGKYSNDKSQKLFKIPVATFAAEHELQRVDGAAFSETSTSGEPDFRNGG 511 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T++ LE SNA+ E ++I Q +++ + ++ + + + Sbjct: 512 TIRAKALESSNADIAKEFSKLIITQQAYSANSKVLSTANQMLDSVLN 558 >gi|50120639|ref|YP_049806.1| flagellar hook protein FlgE [Pectobacterium atrosepticum SCRI1043] gi|49611165|emb|CAG74611.1| flagellar hook protein [Pectobacterium atrosepticum SCRI1043] Length = 405 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 19/147 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ TVGF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGNVTFADMFAGSKVGMGVKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ S+ +LD A+ G ++ L+ G +R+G+F + ++V+A G Sbjct: 58 -LQDFGNGTVTSSSRDLDIAISGGGFYRLQDTNGSTYYSRNGQFMLNG-RNIVNAQGMQL 115 Query: 120 -KYPVLDM--------ASVPIQIPQKD 137 YPV VP+ +P D Sbjct: 116 TGYPVAGTPPTVQTGADPVPLTVPDGD 142 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 14/147 (9%) Query: 103 DGRFKVTDDGSLV-SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGK--VIA 156 +G F + GS+ + Y P F + + G I G+ + Sbjct: 259 NGTFTLNLTGSVQQNTEYSYKSPTQNG---FAPGSLTGFAINDDGTIEGSYSNGQKQALG 315 Query: 157 TMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSGV----TVKRGFLEDSNANSMYEMG 211 + L S +G ++ S + L+G + E SN + E+ Sbjct: 316 QILLASFANPEGLSPEGDNAWSETASSGQAVVGLAGTGSLGKLIGKSTESSNVDLSKELV 375 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + S I + + + Sbjct: 376 SMIVAQRNYQSNAQTIKTQDSILQTLV 402 >gi|260752886|ref|YP_003225779.1| hypothetical protein Za10_0647 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552249|gb|ACV75195.1| protein of unknown function DUF1078 domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 417 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 31/189 (16%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV----GAIKNDIDQKISFV 59 +F L A + LS ++N++N+ + GF+ F E+V A +I Q Sbjct: 2 AFYTSLTGLNAAQTDLSVTSNNIANSGSYGFKKTTTDFGELVADSPYASAKNIGQGTRLR 61 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALES---PRGIILTRDGRFKVTDDGSLVS 116 A+ +++ S GS +T LD + GD +F ++S I LTRDG F + ++V+ Sbjct: 62 ATIQDFTS---GSMKTTNRALDMMVNGDGFFLVKSQGASGTISLTRDGSFLTDKNNNVVT 118 Query: 117 ASGKY--------------------PVLDMASVPIQIPQKDEIFNVGE-KGEISQKGKVI 155 + G Y + +P ++ ++ G Q G + Sbjct: 119 SDGHYLQVYATTNSGDIYNNGQTGSATGGRTVKNLTLPSYEDQVSISATDGNTVQVGNNL 178 Query: 156 ATMGLYSVD 164 A G + Sbjct: 179 AATGTVKIG 187 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 11/116 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS-----GISPNIPPTPLE 187 +VG G+++ ++ + L V+ G N+ G S ++ + Sbjct: 303 SNISVGTDGKVTATFANGNQYILGAVALGDVNNRNGLHSTGNANWTVTGTSGSLNYREAD 362 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +V+ G LE SN + E+ +I + F + + I + M+ + NI S Sbjct: 363 TSGLGSVQSGALELSNIDLTQELVNLISEQRNFQANSKAI-STDNQMVSYVMNIQS 417 >gi|218528943|ref|YP_002419759.1| hypothetical protein Mchl_0913 [Methylobacterium chloromethanicum CM4] gi|218521246|gb|ACK81831.1| protein of unknown function DUF1078 domain protein [Methylobacterium chloromethanicum CM4] Length = 460 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 25/214 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A LS ++ N++N+ T G++ I F +++ + Q V + Sbjct: 5 SALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDML-VDGDAKSQTAGSVGAF 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP-----------RGIILTRDGRFKVTDD 111 E + G+ +STG + A++G +FA+ G + TR G F D Sbjct: 64 SELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAPDKD 123 Query: 112 GSLVSASGKYPVL---------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G LV+ +G Y V + PI+I + + I+ + + + Sbjct: 124 GYLVNTAGAYLVGASLDPVTGQTNGTGPIKI--SNAVIPAKPTTTITYSANLPKSPATTN 181 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 +QG + + G + TP + +V + Sbjct: 182 AASTQGLLSAFSDGTDARV--TPANGATTGSVSQ 213 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG 191 VGE G IS G VI + + G + P+ L Sbjct: 350 NSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKPDSLGNYQQTVASGEPIVGLKD 409 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TV +E SN + E +MI Q +++ T ++ + + + + Sbjct: 410 STVVGANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQTMISDLLN 457 >gi|224825777|ref|ZP_03698881.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] gi|224602001|gb|EEG08180.1| flagellar basal body FlaE domain protein [Lutiella nitroferrum 2002] Length = 399 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S I L+ A+ +L ++++N++N+ T GF++ + FS A VAS Sbjct: 2 SLEIALSGINAVNSQLGSISNNIANSGTYGFKSSRANFS----ATYAGTQATGVEVASNT 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + + + G+ ++TG LD A++G +F G + TR G F DG LV + G++ Sbjct: 58 QSIGRSGGT-VTTGRALDAAIQGRGFFVTRDNAGSVAYTRVGIFNTDKDGVLVDSFGRHV 116 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 7/95 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 + + T+ L + G V + + P L+G T+ G LE SN + Sbjct: 306 QAVGTIALANFPNEDGLVPVSATSWVDSPASGTALLSAPGSGLAG-TLSAGSLEQSNVDM 364 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ ++ + + + T +I + + ++ + Sbjct: 365 TAELVNLMSAQRNYQANTKVISTEGQVIQALMQAV 399 >gi|240137257|ref|YP_002961726.1| flagellar hook protein FlgE [Methylobacterium extorquens AM1] gi|240007223|gb|ACS38449.1| flagellar hook protein FlgE [Methylobacterium extorquens AM1] Length = 403 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A R+STVA+N+ N T G++ +FS ++ + + V + Sbjct: 9 TGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRS 68 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-DDGSLVSASG----K 120 E G ST ++ D A++G+ +F + G +TR G F V G+LV+A G Sbjct: 69 VSEGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNLVNAGGFTLMG 128 Query: 121 YPVLDMASVPI 131 Y + + P+ Sbjct: 129 YSLANGTPNPV 139 Score = 55.0 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 50/166 (30%), Gaps = 19/166 (11%) Query: 84 LEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 + G + P G +T D G L SG + + A+ P G Sbjct: 244 VNGGGSALVAVPNGRSITVD-------LGGLTQLSGDHNLSGTANG--SSPTSVSGTAFG 294 Query: 144 EKGEISQ---KGKVIATMG--LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT----- 193 E G + G A L V R + + + ++ Sbjct: 295 EDGTVYAVYTDGTRKAAFKVPLADVASPDNLAPRAGNVFTTSAESGDIQVGFAGQGGRGI 354 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K G LE SN + E+ MI + + + + + + + Sbjct: 355 LKAGALEQSNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMN 400 >gi|253688972|ref|YP_003018162.1| hypothetical protein PC1_2595 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755550|gb|ACT13626.1| protein of unknown function DUF1078 domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 405 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 13/161 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ TVGF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASNNLDVIGNNIANSATVGFKSGTVTFADMFAGSKVGMGVKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG--- 119 G+ S+ +LD A+ G ++ L+ G + +R+G+F + ++V+A G Sbjct: 58 -LQDFGNGTVTSSSRDLDIAISGGGFYRLQDTNGSVYYSRNGQFMLNG-RNIVNAQGMQL 115 Query: 120 -KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 YPV + P+ D + G++ A++ Sbjct: 116 TGYPV--AGTPPVVQTGADPVPLTIPDGDMLANRTTTASIK 154 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 10/115 (8%) Query: 134 PQKDEIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLE 187 P + + + G I G+ + + L +G ++ S + Sbjct: 288 PGSLTGYAINDDGTIVGSYSNGQKQALGQILLAGFANPEGLSPEGDNAWSETASSGQAVV 347 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 L+G + E SN + E+ MI + + S I + + + Sbjct: 348 GLAGSGNLGKLVGKSTEMSNVDLSKELVNMIVAQRNYQSNAQTIKTQDSILQTLV 402 >gi|240137459|ref|YP_002961930.1| putative Flagellar hook protein flgE [Methylobacterium extorquens AM1] gi|240007427|gb|ACS38653.1| putative Flagellar hook protein flgE [Methylobacterium extorquens AM1] Length = 460 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 25/214 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A LS ++ N++N+ T G++ I F +++ + Q V + Sbjct: 5 SALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDML-VDGDAKSQTAGSVGAF 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP-----------RGIILTRDGRFKVTDD 111 E + G+ +STG + A++G +FA+ G + TR G F D Sbjct: 64 SELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAPDKD 123 Query: 112 GSLVSASGKYPVL---------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G LV+ +G Y V + PI+I + + I+ + + + Sbjct: 124 GYLVNTAGAYLVGASLDPVTGQTNGTGPIKI--SNAVIPAKPTTTITYSANLPKSPATTN 181 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 +QG + + G + TP + +V + Sbjct: 182 AASTQGLLSAFSDGTDARV--TPANGATTGSVSQ 213 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG 191 VGE G IS G VI + + G + P+ L Sbjct: 350 NSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKPDSLGNYQQTVASGEPIVGLKD 409 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TV +E SN + E +MI Q +++ T ++ + + + + Sbjct: 410 STVVGANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQTMISDLLN 457 >gi|163850383|ref|YP_001638426.1| hypothetical protein Mext_0950 [Methylobacterium extorquens PA1] gi|163661988|gb|ABY29355.1| protein of unknown function DUF1078 domain protein [Methylobacterium extorquens PA1] Length = 460 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 25/214 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A LS ++ N++N+ T G++ I F +++ + Q V + Sbjct: 5 SALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDML-VDGDAKSQTAGSVGAF 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP-----------RGIILTRDGRFKVTDD 111 E + G+ +STG + A++G +FA+ G + TR G F D Sbjct: 64 SELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAPDKD 123 Query: 112 GSLVSASGKYPVL---------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G LV+ +G Y V + PI+I + + I+ + + + Sbjct: 124 GYLVNTAGAYLVGASLDPVTGQTNGTGPIKI--SNAVIPAKPTTTITYSANLPKSPATTN 181 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 +QG + + G + TP + +V + Sbjct: 182 AASTQGLLSAFSDGTDARV--TPANGATTGSVSQ 213 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG 191 VGE G IS G VI + + G + P+ L Sbjct: 350 NSVEVGENGIISGKYSNGSVIGLARVEVAQFVNPDGLKPDSLGNYQQTVASGEPIVGLKD 409 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TV +E SN + E +MI Q +++ T ++ + + + + Sbjct: 410 STVVGANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQTMISDLLN 457 >gi|163850123|ref|YP_001638166.1| flagellar hook protein FlgE [Methylobacterium extorquens PA1] gi|163661728|gb|ABY29095.1| protein of unknown function DUF1078 domain protein [Methylobacterium extorquens PA1] Length = 403 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A R+STVA+N+ N T G++ +FS ++ + + V + Sbjct: 9 TGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRS 68 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-DDGSLVSASG----K 120 E G ST ++ D A++G+ +F + G +TR G F V G+LV+A G Sbjct: 69 VSEGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNLVNAGGFTLMG 128 Query: 121 YPVLDMASVPI 131 Y + + P+ Sbjct: 129 YSLANGTPNPV 139 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 12/138 (8%) Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATMG--LYSVDMS 166 G L SG + + A+ P GE G + G A L V Sbjct: 265 GGLTQLSGDHNLSGTANG--SSPTSVSGTAFGEDGTVYAVYTDGTRKAAFKVPLADVASP 322 Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLEDSNANSMYEMGQMIHLTQKFN 221 R + + + ++ +K G LE SN + E+ MI + Sbjct: 323 DNLAPRAGNVFTTSAESGDIQVGFAGQGGRGILKAGALEQSNVDVSTELTTMIESQTVYT 382 Query: 222 SITTLIDENEKSMLEAIR 239 + + + + + + Sbjct: 383 ANSKVFMTGNELLETLMN 400 >gi|83595982|gb|ABC25342.1| flagellar hook protein [uncultured marine bacterium Ant24C4] Length = 437 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 10/145 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL+T++DN++N+ T G++ F +V N V Sbjct: 3 ISSSLNAGVAGLSANATRLATISDNIANSSTFGYKRAVTDFQSLVIENSNSKYTA-GGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWF------ALESPRG---IILTRDGRFKVTDD 111 + L E GS +ST D A+ G +++ G ++LT G F+ +D Sbjct: 62 TTTTRLIDERGSLVSTTNPTDLAVRGRGLLPVTSEASVQVANGDHPLLLTTTGSFRPDED 121 Query: 112 GSLVSASGKYPVLDMASVPIQIPQK 136 G L S SG + A+ IP Sbjct: 122 GYLRSPSGLVLMGWAANADGTIPTN 146 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LE 187 +V G + S +V+ + L V G + + Sbjct: 323 TAIDVDVNGFVRASFDSGINRVLYQVPLVDVSNVNGLESLDQQSYRVSPDSGTFFLWDAG 382 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 D V E+S+ + E+ Q+I + ++S +I ++ + E Sbjct: 383 DGPTGDVVSFAREESSTDVAGELTQLIQTQRAYSSNAKVIQTVDEMLQETTN 434 >gi|229109210|ref|ZP_04238809.1| Flagellar hook protein flgE [Bacillus cereus Rock1-15] gi|228674220|gb|EEL29465.1| Flagellar hook protein flgE [Bacillus cereus Rock1-15] Length = 406 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKADDKYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + + V G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKLSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+QIP I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGVVGGNIPA 180 Query: 151 KGKVIAT 157 K I+ Sbjct: 181 DAKAISQ 187 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G V+ E +N + Sbjct: 312 KAAGQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KVRGSAQEGANVDL 370 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 371 SVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 403 >gi|254559268|ref|YP_003066363.1| flagellar hook protein FlgE [Methylobacterium extorquens DM4] gi|254266546|emb|CAX22310.1| flagellar hook protein FlgE [Methylobacterium extorquens DM4] Length = 403 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G++ A R+STVA+N+ N T G++ +FS ++ + + V + Sbjct: 9 TGVSGMNAQSNRISTVAENIQNASTTGYKRTSAEFSSLLLDSGDVGNYNSGAVETTLRRS 68 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVT-DDGSLVSASG----K 120 E G ST ++ D A++G+ +F + G +TR G F V G+LV+A G Sbjct: 69 VSEGGPIASTNSDKDLAIQGNGFFVVSDAAGAPFMTRAGNFVVDGKTGNLVNAGGFTLMG 128 Query: 121 YPVLDMASVPI 131 Y + + P+ Sbjct: 129 YSLANGTPNPV 139 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 19/158 (12%) Query: 92 LESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ- 150 ++ P G +T D G L SG + + A+ P GE G + Sbjct: 252 VDVPNGRRITVD-------LGGLTQLSGDHNLSGTANG--SSPTSVSGTAFGEDGTVYAV 302 Query: 151 --KGKVIATMG--LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT-----VKRGFLED 201 G A L V R + + + ++ +K G LE Sbjct: 303 YTDGTRKAAFKVPLADVASPDNLAPRAGNVFTTSAESGDIQVGFAGQGGRGILKAGALEQ 362 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SN + E+ MI + + + + + + + Sbjct: 363 SNVDVSTELTTMIESQTVYTANSKVFMTGNELLETLMN 400 >gi|254559637|ref|YP_003066732.1| flagellar hook protein flgE [Methylobacterium extorquens DM4] gi|254266915|emb|CAX22714.1| putative Flagellar hook protein flgE [Methylobacterium extorquens DM4] Length = 460 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 25/214 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A LS ++ N++N+ T G++ I F +++ + Q V + Sbjct: 5 SALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDML-VDGDAKSQTAGSVGAF 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP-----------RGIILTRDGRFKVTDD 111 E + G+ +STG + A++G +FA+ G + TR G F D Sbjct: 64 SELTNSIQGNKVSTGVSTNMAIDGQGFFAVRKKTTDAGGGEGFTAGNLYTRRGDFAPDKD 123 Query: 112 GSLVSASGKYPVL---------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G LV+ +G Y V + PI+I + + I+ + + + Sbjct: 124 GYLVNTAGAYLVGASLDPVTGQTNGTGPIKI--SNAVIPAKPTTTITYSANLPKSPATTN 181 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR 196 +QG + + G + TP + +V + Sbjct: 182 AASTQGLLSAFSDGTDARV--TPANGATTGSVSQ 213 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG 191 VGE G IS G VI + + G + P+ L Sbjct: 350 NSVEVGENGIISGKYSNGSVIGLARVDVAQFVNPDGLKPDSLGNYQQTVASGEPIVGLKD 409 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TV +E SN + E +MI Q +++ T ++ + + + + Sbjct: 410 STVVGANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQTMISDLLN 457 >gi|320107029|ref|YP_004182619.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] gi|319925550|gb|ADV82625.1| flagellar hook-basal body protein [Terriglobus saanensis SP1PR4] Length = 408 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 5/124 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----KNDIDQKI 56 SF+I L+ A L T+ +N++N ++V ++ V FS++ N Q Sbjct: 1 MPSFSIALSGLKADSVALDTIGNNLANMNSVAYKKQNVNFSDLFYQTIGVSGANTPQQVG 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVS 116 G F G+ A+ GD +F + + LTR+G F++ G+L++ Sbjct: 61 LGTQVSDISTDYTQGGFNPGGSSTQMAINGDGFFVVSNGGVQELTRNGDFQLDSSGNLIT 120 Query: 117 ASGK 120 + G+ Sbjct: 121 SDGQ 124 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 + F+V G I+ +V+ + L +V QG R N ++ +P ++G Sbjct: 294 QSFSVDSTGTITAQFSNGNTEVLGQVALATVSNEQGLTRMGNDLYVASRASGSPNVGVAG 353 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V ++ LE SN + E +I + F + + + + + I Sbjct: 354 VGGRGDIEGNALELSNVDISTEFANLIVAQRAFEANSKTVTTFDTVTQDTI 404 >gi|320529456|ref|ZP_08030543.1| fagellar hook-basal body protein [Selenomonas artemidis F0399] gi|320138293|gb|EFW30188.1| fagellar hook-basal body protein [Selenomonas artemidis F0399] Length = 661 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 12/119 (10%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--------GKEYLS--- 67 + + +N++N +T GF+ +V F++++ + + V G S Sbjct: 1 MDVIGNNIANVNTTGFKASRVTFADMISQNLSGASSPGTTVGGTNPKQIGLGTSVSSVDL 60 Query: 68 -KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 G STG D AL G+ F ++ TR+G F+ DG+ V + V Sbjct: 61 LFNDGVAQSTGKNTDVALSGNGTFVVKKGNETYYTRNGAFEFDADGNYVMPGSGHYVQG 119 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL----ED 188 ++ + G I+ + A + + + + G + S + P + Sbjct: 548 TSVSIDQSGVITGTYDNNVRQAEAQIAVAQFNNATGLTKMGGSLYQESNNSGPANIKTAN 607 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV++ LE SN N + MI + F S + +I +++ + I Sbjct: 608 DLGVSMTPSALEMSNVNIADQFSDMIITQRGFQSNSKIITVSDEMLETLIN 658 >gi|259417834|ref|ZP_05741753.1| flagellar hook protein FlgE [Silicibacter sp. TrichCH4B] gi|259346740|gb|EEW58554.1| flagellar hook protein FlgE [Silicibacter sp. TrichCH4B] Length = 422 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 9/142 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL+ ++DN++N T G++ + F +V + +N V+ Sbjct: 3 ISSSLNAGVAGLAANSTRLAAISDNIANASTAGYKRVVTSFESMVIS-QNGGSYAAGGVS 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE-----SPRG---IILTRDGRFKVTDDG 112 + E S IST D A+ G + + G ++LT G F+ D+G Sbjct: 62 VNNTRMIDERSSLISTSNATDLAVAGRGFLPVASLAEVDSGGDPTMLLTTSGSFRTNDEG 121 Query: 113 SLVSASGKYPVLDMASVPIQIP 134 L + SG + A+ IP Sbjct: 122 YLTTTSGLVLLGWPANADGTIP 143 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 140 FNVGEKGEI---SQKG--KVIATMGLYSVDMSQG--------FVRRENSGISPNIPPTPL 186 V E G + + G +++ + L + + G F+ +SG Sbjct: 310 VEVDEGGFVHALYENGSSRIVYQIPLADMPNANGMKSLDSQTFMPSPDSGAYYLWDAGAG 369 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ E+S + E+ MI + ++S +I ++ + E Sbjct: 370 PTGEVASYRQ---EESGTDVATELTSMIQTQRAYSSNAKVIQTVDEMLQETTN 419 >gi|163803169|ref|ZP_02197052.1| flagellar hook protein [Vibrio sp. AND4] gi|159173069|gb|EDP57902.1| flagellar hook protein [Vibrio sp. AND4] Length = 399 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F + + + +G Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDNMGQMLYTRAGVFGTDKNNFVTANNG 113 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGV- 192 V + G + ++ + L +QG + S P+ + G Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKVSGTSWTQSFSSGAPIMGVPGTG 347 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + G LE SN + E+ ++ + + + I N+K + Sbjct: 348 TLGNLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399 >gi|34558066|ref|NP_907881.1| flagellar hook protein FlgE [Wolinella succinogenes DSM 1740] gi|34483784|emb|CAE10781.1| FLAGELLAR HOOK PROTEIN FLGE [Wolinella succinogenes] Length = 745 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + GL+ L + L +V++N++N +T G+R +F + + I+ Sbjct: 1 MNATLFNGLSGILTHQVGLDSVSNNIANVNTTGYRANIPQFETLFAKSMSYINSSSPINN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL----------ESP-----RGI 98 V +S + GS+ S+ E D A G WF + ++P + Sbjct: 61 DFEHGVTVSSNAISNKNGSYKSSDGEFDIAYAGKGWFVVGTQKSGSFDLQNPTVAATQKN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKY 121 TRDG F +G LV+ASG Y Sbjct: 121 YFTRDGSFSRDSEGYLVNASGYY 143 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 22/123 (17%) Query: 138 EIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNI----PPTPLED 188 + V G I + K +V+ +GL + QG + + P+ Sbjct: 619 DDVGVDSNGRIILTFTNGKSEVMGRVGLAAFVNDQGLQKVGGNMFQMTSISVNGGQPVYS 678 Query: 189 LSGV-------------TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 V LE SN + + ++I L + ++ ++ + Sbjct: 679 SGAPILAWDETGQLKFGKVLDSMLETSNVDIGAALTELIVLQRGYSFNAKAFTTGDELIK 738 Query: 236 EAI 238 EAI Sbjct: 739 EAI 741 >gi|159045919|ref|YP_001534713.1| flagellar hook protein FlgE [Dinoroseobacter shibae DFL 12] gi|157913679|gb|ABV95112.1| flagellar hook protein FlgE [Dinoroseobacter shibae DFL 12] Length = 434 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 13/143 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ A RL+T++DN++N+ T G++ + F +V + V Sbjct: 3 ISSSLNAGVSGLNANATRLATISDNIANSSTYGYKRAEADFQSLVINGNSSGTYSAGGVR 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL-------ESPRGIILT--RDGRFKVTDD 111 + E G ++T D A+ G + E+ G L+ G F D Sbjct: 63 VTTTRVIDEQGPLVTTSNPTDLAVGGSGMLPVTTLSALDENTGGYPLSLMTTGSFSPNAD 122 Query: 112 GSLVSASG----KYPVLDMASVP 130 G L + +G +P +VP Sbjct: 123 GVLTTETGMVLMGWPAAPDGTVP 145 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 14/142 (9%) Query: 109 TDDGSLVSASGKYPV-LDMASVPIQIPQKDEIFNVGEKG---EISQKG--KVIATMGLYS 162 ++G + PV + P+ V G + G + I + L Sbjct: 293 DENGMTQLSDTFAPVSISKNGSPV---GNLSTVEVDPNGFVVAVYDTGFTRTIYQVPLAD 349 Query: 163 VDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 V G + R+N + P + V LE+S A+ E+ ++I Sbjct: 350 VPNPNGLLSRDNQSYMISPESGPFFLWNAGEGPTGDVIGFALEESAADVAGELTRLITTQ 409 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + ++S +I ++ + E Sbjct: 410 RAYSSNAKIIQTVDEMLQETTN 431 >gi|170748125|ref|YP_001754385.1| flagellar hook protein FlgE [Methylobacterium radiotolerans JCM 2831] gi|170654647|gb|ACB23702.1| flagellar basal body FlaE domain protein [Methylobacterium radiotolerans JCM 2831] Length = 407 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 + G++ A RL TVADN+ N +T G++ +FS ++ S V + Sbjct: 7 LHAGVSGMNAQSNRLGTVADNIQNQNTTGYKRASTEFSSLLIDPSPGSYDAGS-VDTVVR 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTDD-GSLVSASG 119 + E G+ +T + D ++G+ +F ++ G TR G F V G LV+A+G Sbjct: 66 HRISEEGTGTATNSPTDLTIKGNGFFVVKDGSGRSYLTRAGNFVVDGQTGDLVNAAG 122 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 10/108 (9%) Query: 142 VGEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSG 191 + G + G A + + SV R + N P + Sbjct: 297 IDTDGTVYAIYRDGSRRAAFRIPVASVGSPDNLTPRAGNVFDVNPESGPAQIGFANVGGR 356 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE+S + E+ MI + + + + + + + Sbjct: 357 GHIQSKMLENSTVDLGNELATMIEAQTTYGANSKVFQTGSEMLELLVN 404 >gi|297183504|gb|ADI19634.1| flagellar hook protein flge [uncultured delta proteobacterium HF0770_45N15] Length = 494 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 6/134 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVA 60 S G + + + +N+SN +T GF+ + F +++G + + V Sbjct: 6 SLQTGASGVKTYGKAMQVTGNNISNVNTFGFKRNIIAFEDLLGNDYPQGRSFTKVSNGVK 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVSAS 118 G + G+ ST D A+ G +F + P TR+G+ DG L + Sbjct: 66 IGSVEMEVSQGALESTQLTTDLAIAGGGYFTVIDPSTSNEYFTRNGQMSYDKDGFLATPR 125 Query: 119 GKYPVLDMASVPIQ 132 G Y V + I Sbjct: 126 G-YRVQALEVDRIT 138 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 12/116 (10%) Query: 135 QKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN------IPP 183 E V G ++ + I + L D + + ++ + + Sbjct: 377 GNLESIFVEADGTVTGVFDSGYNRPIGRIILTKFDNAGKLAQLGDNLLVETLSSGKKVTG 436 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P G ++ LE SN + E +MI + F + + +++ +++ + Sbjct: 437 EPGTAGFG-EIRSQMLEQSNVDLSLEFVKMIESQRAFQANAKTVTTSDEMIVDLVN 491 >gi|222095377|ref|YP_002529437.1| flagellar hook protein flge [Bacillus cereus Q1] gi|221239435|gb|ACM12145.1| flagellar hook protein [Bacillus cereus Q1] gi|324325771|gb|ADY21031.1| flagellar hook protein FlgE [Bacillus thuringiensis serovar finitimus YBT-020] Length = 406 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + LS ++N++N TVG++ K F +++ ++ Sbjct: 1 MIKALYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDGNYAG 60 Query: 61 S-----------GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFK 107 + G+ TG + A+EG+ +F + +G + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKTQAAMEGNGFFVVGDSKGGNMEFTRKGTFG 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+QIP I + G I Sbjct: 121 ISSDYYITNTEGQYVFAYPANEATGEVDLSGIPGPLQIPMGTAIGGIRTSKGVVGGNIPA 180 Query: 151 KGKVIAT 157 K I+ Sbjct: 181 DAKAISQ 187 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + G ++ N + ++ +G ++ E +N + Sbjct: 312 KAAGQLAVAMFPNEGGLMKTGNGNYTATNTTGILALGASGQNGAG-KIRGAAQEGANVDL 370 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 371 SVEFVDLMLYQRGFQGNAKVIKVSDEVLNEVVN 403 >gi|119385423|ref|YP_916479.1| hypothetical protein Pden_2696 [Paracoccus denitrificans PD1222] gi|119375190|gb|ABL70783.1| protein of unknown function DUF1078 domain protein [Paracoccus denitrificans PD1222] Length = 446 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 11/154 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-QKISFV 59 + ++ + G++ A RL+T++DN++N+ T G++ + F +V + V Sbjct: 3 ISSALSAGVSGLAANSTRLATISDNIANSGTYGYKRVDTSFESMVINQGRGGGLYTANGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL----------ESPRGIILTRDGRFKVT 109 + + E G+ + T LD A+ G + + +++TR G F+ Sbjct: 63 RAATSRIVDERGNLVPTSHPLDIAISGRGMLPVIYSASLDSGTATSSDLVMTRTGSFRTD 122 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 D G L + SG + A+ IP + G Sbjct: 123 DQGYLRTDSGLVLMGWPANSDGTIPSQPRDSTTG 156 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 13/123 (10%) Query: 127 ASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNI 181 P+ + E G + + + + L V G + +N + Sbjct: 324 NGSPV---GNLTALEIDENGYLQATYDTGFTRTLYQVPLVDVPNPNGLIAMDNQTYKISP 380 Query: 182 PPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 D V E S + E+ +I + + S +I ++ + E Sbjct: 381 RSGAFYLWNAGDGPTGAVAGYAREASTTDVAAELTDLIQTQRAYTSNAKVIQTVDEMLQE 440 Query: 237 AIR 239 Sbjct: 441 TAN 443 >gi|296103611|ref|YP_003613757.1| Flagellar basal body FlaE domain protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058070|gb|ADF62808.1| Flagellar basal body FlaE domain protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 399 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 18/160 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ GL+ A + L V +N++N+ TVGF+ V F+++ V Sbjct: 2 GFSQGLSGLSAAAKALDVVGNNIANSQTVGFKAGSVSFADIFA------GSTGMGVQVAG 55 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 + G+ ++ + LD + G +F + G + R+G+F+ +G +V+ + Sbjct: 56 VSQNFGDGALMNGASALDMGISGRGFFRMVDEAGSVFYGRNGQFEQDQNGFIVNKTNGLF 115 Query: 123 VL-----------DMASVPIQIPQKDEIFNVGEKGEISQK 151 + PI+IP D KG ++ Sbjct: 116 LTGYQATDGVINPGAQVGPIRIPTDDMPPAASTKGSVAGN 155 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 10/118 (8%) Query: 132 QIPQKDEIFNVGEKGE---ISQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIP-PTP 185 Q P K + V + GE I G + +A + L + G ++ N+ + P Sbjct: 280 QAPGKFNSYQVSDTGEVIAIYSNGKRQTVAQVVLADFANAGGLEQQGNNLWAETSQSGQP 339 Query: 186 LEDLSGVT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG + LE SN N EM MI + + S + I + + + Sbjct: 340 FLGTSGSGSFGDISGNMLESSNVNLGDEMVNMIVYQRNYQSNSQTIKTQSEVLQTLVN 397 >gi|28900122|ref|NP_799777.1| flagellar hook protein FlgE [Vibrio parahaemolyticus RIMD 2210633] gi|153837072|ref|ZP_01989739.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ3810] gi|260365772|ref|ZP_05778268.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|260880694|ref|ZP_05893049.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|260897700|ref|ZP_05906196.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|260899389|ref|ZP_05907784.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] gi|28808405|dbj|BAC61610.1| LfgE [Vibrio parahaemolyticus RIMD 2210633] gi|149749660|gb|EDM60405.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ3810] gi|308086228|gb|EFO35923.1| flagellar hook protein FlgE [Vibrio parahaemolyticus Peru-466] gi|308092098|gb|EFO41793.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AN-5034] gi|308109176|gb|EFO46716.1| flagellar hook protein FlgE [Vibrio parahaemolyticus AQ4037] gi|308114990|gb|EFO52530.1| flagellar hook protein FlgE [Vibrio parahaemolyticus K5030] gi|328470101|gb|EGF41012.1| flagellar hook protein FlgE [Vibrio parahaemolyticus 10329] Length = 398 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F + + +G Sbjct: 58 QNFDKN-GSITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNG 113 Score = 60.1 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGV- 192 V + G + + ++ + L +QG + + P+ + G Sbjct: 287 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLAKVSGTAWTQSFSSGAPIMGVPGSG 346 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + G LE SN + E+ ++ + + + I ++K + Sbjct: 347 TLGNLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTSDKLTQALFNAV 398 >gi|1272368|gb|AAA97476.1| LfgE [Vibrio parahaemolyticus] Length = 362 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F + + +G Sbjct: 58 QNFDKN-GSITGTGRSMDLAINGSGFFVTKDHMGQTLYTRSGVFGTDKSNFVTANNG 113 >gi|297569153|ref|YP_003690497.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus AHT2] gi|296925068|gb|ADH85878.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus AHT2] Length = 806 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN---DIDQKISFVA 60 S G++ + +S + DN++N +TV F + + F +V+ + Q V Sbjct: 6 SLYAGISGLSTMGNGMSVLGDNIANVNTVAFNSSRSTFQDVLSQSVSTAAGTAQVGRGVT 65 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR---GIILTRDGRFKVTDDGSLVSA 117 GSF ST T D A+ G+ +F L + TR G F+ G L S Sbjct: 66 LTTVDGLFAQGSFESTSTPTDMAIGGEGFFMLRGGDSAEADMFTRAGEFRFDQHGFLTSP 125 Query: 118 SGKYP 122 G + Sbjct: 126 GGHFV 130 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLEDLSG 191 + +V G I+ G+V+ A + L QG + + + P+ G Sbjct: 692 QSVSVDTAGIITGNFSNGQVLMQAKVALADFANLQGLHKVGGNIFRATTQSGAPVTGEPG 751 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E +MI + F + + +I ++ + E I Sbjct: 752 TNGLGEIAPNSLEMSNVDLGTEFVKMITTQRGFQANSKMITTTDEMLNELIN 803 >gi|323527713|ref|YP_004229866.1| flagellar hook-basal body protein [Burkholderia sp. CCGE1001] gi|323384715|gb|ADX56806.1| flagellar hook-basal body protein [Burkholderia sp. CCGE1001] Length = 502 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 75/179 (41%), Gaps = 4/179 (2%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVASGKEYLSKEVGSFIS 75 L + +N++N +TVGF++ +F+++ ++ + ++ + G+ S Sbjct: 16 DLDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLSEVQQQFSQGTITS 75 Query: 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 T LD A+ G+ +F L + ++ +R+G F++ +G + +A G + A+ I Sbjct: 76 TNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINT 135 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 + I+ K + GL +Q + ++ + T G T+ Sbjct: 136 AQTVPLSVPTANIAPKATTNISAGLNL--NAQDPLMLGTPSVTASASNTGTLTSPGATI 192 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISPN----IPPTPLED 188 F +G G ++ Q+ + + L + G V N+ + Sbjct: 390 TSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNNEFQQTSQSGVAQISAPG 449 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G +E+SN + E+ +I + + + I + I Sbjct: 450 STNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQTVDQTLIN 501 >gi|156976141|ref|YP_001447047.1| flagellar hook protein FlgE [Vibrio harveyi ATCC BAA-1116] gi|156527735|gb|ABU72820.1| hypothetical protein VIBHAR_04912 [Vibrio harveyi ATCC BAA-1116] Length = 399 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F + + + +G Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDHMGQMLYTRAGVFGTDKNNFVTANNG 113 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVT 193 V + G + ++ + L +QG + + + + P+ + G Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKVSGTAWTQSFSSGAPIMGVPGTG 347 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + G LE SN + E+ ++ + + + I N+K + Sbjct: 348 TLGDLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399 >gi|153831673|ref|ZP_01984340.1| flagellar hook protein FlgE [Vibrio harveyi HY01] gi|269960116|ref|ZP_06174492.1| Flagellar hook protein flgE [Vibrio harveyi 1DA3] gi|148872183|gb|EDL71000.1| flagellar hook protein FlgE [Vibrio harveyi HY01] gi|269835087|gb|EEZ89170.1| Flagellar hook protein flgE [Vibrio harveyi 1DA3] Length = 399 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGGRTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + K GS TG +D A+ G +F + G + TR G F + + + +G Sbjct: 58 QNFDKN-GSVTGTGRAMDLAINGSGFFVTKDHMGQMLYTRAGVFGTDKNNFVTANNG 113 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGVT 193 V + G + ++ + L +QG + + + + P+ + G Sbjct: 288 VRVEDNGMVYATYTNGQSQLQGQVVLADFANTQGLSKVSGTAWTQSFSSGAPIMGVPGTG 347 Query: 194 ----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + G LE SN + E+ ++ + + + I N+K + Sbjct: 348 TLGDLTPGALEGSNVDLTSELVALMTAQRNYQANAKTISTNDKLTQALFNAV 399 >gi|170694392|ref|ZP_02885546.1| protein of unknown function DUF1078 domain protein [Burkholderia graminis C4D1M] gi|170140815|gb|EDT08989.1| protein of unknown function DUF1078 domain protein [Burkholderia graminis C4D1M] Length = 502 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 4/179 (2%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVASGKEYLSKEVGSFIS 75 L + +N++N +TVGF++ +F+++ ++ + +I + G+ S Sbjct: 16 DLDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLSEVQQQFSQGTITS 75 Query: 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 T LD A+ G+ +F L + ++ +R+G F++ +G + +A G + A+ I Sbjct: 76 TNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSTGVINT 135 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 + I+ K GL +Q + ++ G T+ Sbjct: 136 AQTVPLSVPTANIAPKATTNIAAGLNL--NAQDPLMLGTPSVTAATTNAGTLTTPGATI 192 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISPN----IPPTPLED 188 F +G G ++ Q+ + + L + G V N+ + Sbjct: 390 TSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNNEFQQTSQSGVAQISAPG 449 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G +E+SN + E+ +I + + + I + I Sbjct: 450 STNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQTVDQTLIN 501 >gi|254488501|ref|ZP_05101706.1| flagellar hook protein FlgE [Roseobacter sp. GAI101] gi|214045370|gb|EEB86008.1| flagellar hook protein FlgE [Roseobacter sp. GAI101] Length = 432 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL++V+DN++N+ T G++ + F+ +V + + A Sbjct: 3 ISSSLNAGVAGLQANATRLASVSDNIANSSTYGYKRVVTDFNSLVLSEGSSSYTAGGVRA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR---------GIILTRDGRFKVTDD 111 S + L ++ G+ +ST D A+ G + + + ++LT G F++ + Sbjct: 63 SSQRLLGED-GALVSTTNSTDLAVRGRGFLPVTTATEFNANSETPEMMLTTTGSFRLDAE 121 Query: 112 GSLVSASG----KYPVLDMASVPI 131 G L + SG +P S+PI Sbjct: 122 GFLKTESGLLLMGWPANADGSIPI 145 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 13/126 (10%) Query: 124 LDMASVPIQIPQKDEIFNVGEKG---EISQKG--KVIATMGLYSVDMSQGFVRRENSGIS 178 L PI V E G I G I + L + +G V + Sbjct: 307 LTKDGSPI---GNMAGVEVDENGYVNAIYDNGLRNTIYQIPLIDMPNPEGMVSLDAQTYL 363 Query: 179 PNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P+ + +K E+S + E+ MI + ++S +I ++ Sbjct: 364 PSTKSGAYFLWDSGEGPTGDIKSYSREESTTDVATELTTMIRTQRAYSSNAKVIQTVDEM 423 Query: 234 MLEAIR 239 + E Sbjct: 424 LQETTN 429 >gi|134283656|ref|ZP_01770355.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 305] gi|134245065|gb|EBA45160.1| flagellar basal body protein FlaE [Burkholderia pseudomallei 305] Length = 404 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS--GKEYLSKE 69 L + +N++N +TVGF+ +FS++ + + Sbjct: 1 MAGASSDLDVIGNNIANANTVGFKGSTAQFSDMYANSVASAVNNPIGIGTMLASVQQQFS 60 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVL----- 124 G+ S+ + L+ A+ G+ +F + + +RDG F+ +G +V++ G + Sbjct: 61 QGTITSSTSSLNVAINGNGFFQMSNNGVTTYSRDGTFQRDKNGYIVNSQGLNLMGYAANA 120 Query: 125 -DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 + + +P + N+ G+ Sbjct: 121 NGVINTAATVPLQAPTTNIAPTATTKITGQF 151 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSG 191 F++G G+++ + + L + + G V N+ + P G Sbjct: 292 TTFSIGADGKVTGNYSNGQTSTLGQIVLANFNNPNGLVNVGNNQYVESAASGVPQISAPG 351 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE+SN + ++ ++I + + + I + I Sbjct: 352 STNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLIN 403 >gi|307719963|ref|YP_003891103.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] gi|306978056|gb|ADN08091.1| flagellar hook-basal body protein [Sulfurimonas autotrophica DSM 16294] Length = 420 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 8/138 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND---IDQKIS 57 M +F G++ + V+DNM+N DT+GFR +FS + + + S Sbjct: 2 MTQAFYTGISGIKTNSTGIDIVSDNMANIDTIGFRGNDYEFSSLFENMLSTDTLGTPSNS 61 Query: 58 FVASGKEY----LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + G + + ++ GSF+ + D AL D WF ++ + TRDG F D Sbjct: 62 SIGVGSQLQASPMVQQKGSFMISDKSTDLALFEDGWFGIKGNGNTLYTRDGNFTFDKDDD 121 Query: 114 LVSASGKYPVLDMASVPI 131 LV+ G + VL I Sbjct: 122 LVTQDGFH-VLGTMGNNI 138 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 44/189 (23%) Query: 93 ESPRGIIL--TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQK---DEIFNVG---- 143 +S G L T+ G+ G+L+S + +D P+ I D + ++ Sbjct: 231 QSLDGTKLYDTQTGQVSFDASGALISNT--LTTIDNNGAPVSIDLGNNFDGVVSISNVPI 288 Query: 144 -----EKGEI---------SQKGKVIAT-----------MGLYSVDMSQGFVR------- 171 G I ++ G+VIAT + +Y QG R Sbjct: 289 SASSTADGTIGGDLQGYDINKNGEVIATFTNGMQSSVGKIAVYHFQNDQGLNRISGTRFQ 348 Query: 172 -RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 NSG + E++ G + LE SN Y + ++I L + +++ + + Sbjct: 349 ESTNSGKALFFKDEKGENIIGTNMANFKLEGSNIEMSYGLTELIILQRAYDANSKSVTTA 408 Query: 231 EKSMLEAIR 239 ++ M +A+ Sbjct: 409 DQMMQKALN 417 >gi|300716218|ref|YP_003741021.1| flagellar biosynthesis, hook protein [Erwinia billingiae Eb661] gi|299062054|emb|CAX59170.1| Flagellar biosynthesis, hook protein [Erwinia billingiae Eb661] Length = 414 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N+ TVGF++ V F+++ K + K++ V Sbjct: 2 AFSQAVSGLNAASSNLDVIGNNIANSATVGFKSATVSFADMFADSKVGLGVKVAAVTQ-- 59 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG 119 G+ ST LD A+ +F + G + +R+G+F + + ++V+A G Sbjct: 60 ---DFNDGTTTSTSRGLDVAISQSGFFRMTDTSGAVYYSRNGQFTLDANRNIVNADG 113 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 17/150 (11%) Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQI---PQKDEIFNVGEKGEI-----SQKGKV 154 G F + GS +G P Q P + + G + +++ + Sbjct: 267 AGTFNLNLAGSQQQNTGT----STFGNPTQDGYKPGDLTSYQINNDGTVVGTYSNEQTQT 322 Query: 155 IATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV----TVKRGFLEDSNANSMYE 209 + + L + +G N+ + N L L+G T+ G LE SN + E Sbjct: 323 LGQIALANFANPEGLKSEGNNVWSATNSSGQALVGLAGTGNLGTLTAGALESSNVDLSKE 382 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + MI + + S I ++ + + Sbjct: 383 LVNMIVAQRNYQSNAQTIKTQDQILNTLVN 412 >gi|255262922|ref|ZP_05342264.1| flagellar hook protein FlgE [Thalassiobium sp. R2A62] gi|255105257|gb|EET47931.1| flagellar hook protein FlgE [Thalassiobium sp. R2A62] Length = 422 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A +L+T++DN++N+ T G++ F +V N V+ Sbjct: 3 ISSSLNAGIAGLAANASKLATISDNIANSSTFGYKRAGADFHSLVTGSGNGTYSA-GGVS 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGS 113 + + GS +ST D ++ G + + G ++LT G F+ +G Sbjct: 62 VTTQRMVDARGSLVSTSNATDLSISGRGMLPVTNRSGVESGDSAMMLTSTGSFRTDSNGY 121 Query: 114 LVSASGKYPVLDMASVPIQIP 134 L ++ G + A +P Sbjct: 122 LTTSGGLVLMGVPADGDGVVP 142 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 19/129 (14%) Query: 124 LDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVR------- 171 + P+ V EKG + + + + + + V G Sbjct: 297 ISKNGSPV---GNMISIEVNEKGIVQGIFDTGTTRALYQVPIVDVPNPNGLKAGNQQTFS 353 Query: 172 -RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 +NSG V E+S + E+ Q+I + +++ +I Sbjct: 354 ISQNSGSFYLWDAGAGPVGD---VVSYAREESTTDVAAELTQLIQTQRAYSTNAKVIQTV 410 Query: 231 EKSMLEAIR 239 ++ + E Sbjct: 411 DEMLQETTN 419 >gi|307731363|ref|YP_003908587.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1003] gi|307585898|gb|ADN59296.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1003] Length = 502 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 75/179 (41%), Gaps = 4/179 (2%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVASGKEYLSKEVGSFIS 75 L + +N++N +TVGF++ +F+++ ++ + ++ + G+ S Sbjct: 16 DLDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLSEVQQQFSQGTITS 75 Query: 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 T LD A+ G+ +F L + ++ +R+G F++ +G + +A G + A+ I Sbjct: 76 TNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINT 135 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 + I+ K + GL +Q + ++ N T G T+ Sbjct: 136 AQTVPLSVPTANIAPKATTNISAGLNL--NAQDPLMLGTPSVTANASNTGTLTTPGATI 192 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISPN----IPPTPLED 188 F +G G ++ Q+ + + L + G V N+ + Sbjct: 390 TSFTIGADGTLTGNYSNQQTAALGQIALANFSNQNGLVNLGNNVFQQTSQSGVAQISAPG 449 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G +E+SN + ++ +I + + + I + I Sbjct: 450 STNHGVLQGGAVENSNVDLTSQLVDLITAQRNYQANAQTIKTQQTVDQTLIN 501 >gi|242310749|ref|ZP_04809904.1| flagellar hook protein flge [Helicobacter pullorum MIT 98-5489] gi|239523147|gb|EEQ63013.1| flagellar hook protein flge [Helicobacter pullorum MIT 98-5489] Length = 764 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 33/175 (18%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M S G++ + + ++N++N +T GFR +F + N ++ Sbjct: 1 MVGSLYSGISGIKTHQVGIDVTSNNIANINTTGFRANTPEFKSLFSTNLNYVNSNSPVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--------------II 99 V G ++ G+++S + + A G WF + + Sbjct: 61 DYNYGVTLGSNAINTNDGTYVSADGDFNVAYSGKGWFVVGLNKNGEFDINNPNYNVKQNY 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 TRDG F + +G LV++SG Y + G ++ + Sbjct: 121 FTRDGSFSLDGEGYLVNSSGYYMYGINLG------------KIAADGTLTGTNNL 163 Score = 65.1 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 23/125 (18%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN----------IP 182 + + E G I + I +G+ + QG + + N + Sbjct: 636 DDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFEMNAMTINGETSVVS 695 Query: 183 PTPL---EDLSGVTVKRG-----FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 PL E+ ++K G LE SN ++ + +I + + I ++ M Sbjct: 696 GPPLLAWEETGTASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLM 755 Query: 235 LEAIR 239 EAI+ Sbjct: 756 QEAIQ 760 >gi|322432989|ref|YP_004210238.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] gi|321165216|gb|ADW70920.1| flagellar hook-basal body protein [Acidobacterium sp. MP5ACTX9] Length = 412 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 15/194 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----KNDIDQKISFV 59 F + L+ +A + +L V++N++N DTVGF+ V FS+V ND Q V Sbjct: 4 FGVPLSGLIASQSQLQAVSNNLANLDTVGFKDQNVNFSDVFAQSSLNNGSNDPVQTGLGV 63 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSAS 118 + + G+ +TG + AL G+ +F ++ G TR G F G LV+ S Sbjct: 64 NASQTTSDFTDGAVSATGIASNMALTGNGFFVTKTATGATAYTRAGDFTKNSSGQLVTPS 123 Query: 119 GKYPVL-DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 G + A+ + + + +G G VI +S G Sbjct: 124 GDLVMGYPAANGVVNTSGELQPIQIG-------TGTVIPASATTKFTISANLNSSAAVG- 175 Query: 178 SPNIPPTPLEDLSG 191 S PTP+ D G Sbjct: 176 STFASPTPVYDSLG 189 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 13/112 (11%) Query: 140 FNVGEKGEI------SQKGKVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLE 187 +++ G + + + + S +QG +R N+ G T Sbjct: 298 YSIAADGTVEGTFSNISNPVALGQVAVASFANTQGLLRTGNNDYQATVGSGAASVGTAET 357 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GV + G +E SN + E +MI Q + + + ++ ++ Sbjct: 358 GGRGV-ITGGSVESSNVDVAAEFAKMIVAQQAYQANAKTVTTFDQISQATLQ 408 >gi|99082779|ref|YP_614933.1| hypothetical protein TM1040_2939 [Ruegeria sp. TM1040] gi|99039059|gb|ABF65671.1| Flagellar hook protein flgE [Ruegeria sp. TM1040] Length = 422 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 11/144 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL+ ++DN++N+ T G++ + F +V + ++ V+ Sbjct: 3 ISSSLNAGVAGLAANSTRLAAISDNIANSSTAGYKRVVTSFESMVIS-QSGGRYAAGGVS 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------ESPRGIILTRDGRFKVTDD 111 + E S IST D A+ G + + E P ++LT G F+ D+ Sbjct: 62 VNNTRMIDERSSLISTSNATDLAVAGRGFLPVASLAEVKAGEDPN-MLLTTSGSFRTNDE 120 Query: 112 GSLVSASGKYPVLDMASVPIQIPQ 135 G L ++SG + A+ +P Sbjct: 121 GYLTTSSGLVLLGWPANSDGTLPS 144 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDL 189 V E G + + G +++ + L + + G ++ P+ Sbjct: 310 VEVDEGGYVHALYENGSSRIVYQIPLADMPNANGMRSLDSQTFMPSPDSGAYYLWDAGAG 369 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TV E+S + E+ MI + ++S +I ++ + E Sbjct: 370 PTGTVASYRQEESGTDVASELTTMIQTQRAYSSNAKVIQTVDEMLQETTN 419 >gi|315453407|ref|YP_004073677.1| flagellar hook protein FlgE [Helicobacter felis ATCC 49179] gi|315132459|emb|CBY83087.1| flagellar hook protein, FlgE [Helicobacter felis ATCC 49179] Length = 601 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + +V++N++N +TVG+R +F + + N + Sbjct: 1 MNDTILNAYSGIKTHQFGIDSVSNNIANINTVGYRRNDPEFKSLFASHLNTLGGNTVTAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGI 98 A+G +S + G ++ + ++ + A +G WF + + + Sbjct: 61 DRNYGAAAGGNAISSKDGEYMPSDSDFNMAYQGSGWFIVGPNKNGSMQINKDGYQQAQEN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 TRDG F DG +V++ G Y Sbjct: 121 FYTRDGNFLRDADGYIVNSHGYYV 144 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 22/123 (17%) Query: 139 IFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGFVRRENS----------GISPNIPP 183 + + G I G + + +G+ + QG + ++ G + + Sbjct: 476 NMRIDDDGVIHLIFTNGALETMGRVGIATFINDQGLKKVGSNLFDIQNATVNGRAAPLSG 535 Query: 184 TPLED-------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L V +LE SN N+ + + +I + + ++ + + E Sbjct: 536 NPIIGWDRDDGKLKFGKVMHKYLETSNVNAGHSLTNLILMQRGYSMNAKAFTTGDDLIKE 595 Query: 237 AIR 239 AI Sbjct: 596 AIN 598 >gi|146278769|ref|YP_001168928.1| hypothetical protein Rsph17025_2736 [Rhodobacter sphaeroides ATCC 17025] gi|145557010|gb|ABP71623.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 474 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 10/144 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFV 59 + +S N G+A A +L+++ADN++N+ T G++ F +V N V Sbjct: 3 ISSSLNAGVAGLYANATKLASIADNIANSGTYGYKRADADFESMVITQSANSGTYSAGGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------ESPRGIILTRDGRFKVTD 110 + L +E G+ +ST +D A+ G + +++TR G FK Sbjct: 63 RANTLRLVEERGAIVSTSNAMDIAISGRGMLPVVRETSLGSTTGNDALLMTRTGSFKTDP 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIP 134 +G L + +G + A+ +P Sbjct: 123 NGVLKTDTGLVLLGWPANADGTVP 146 Score = 55.0 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 15/138 (10%) Query: 114 LVSASGKYPVLD--MASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMS 166 L SG + P+ + G I +VI + L V Sbjct: 337 LTQVSGDFAQTGITKNGSPV---GNLTGVEIDAGGLIKATYDTGFTRVIYQIPLVDVPNY 393 Query: 167 QGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 G N + + D V E S + E+ +I + ++ Sbjct: 394 NGLTALNNQTFAISPDSGSFYLWDAGDGPTGDVVGYAREGSTTDVAQELTNLIQTQRAYS 453 Query: 222 SITTLIDENEKSMLEAIR 239 S +I ++ + E Sbjct: 454 SNAKIIQTVDEMLQETTN 471 >gi|149375034|ref|ZP_01892807.1| Flagellar hook protein FlgE [Marinobacter algicola DG893] gi|149360923|gb|EDM49374.1| Flagellar hook protein FlgE [Marinobacter algicola DG893] Length = 618 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISFVASGKEYLSKEVGSFI 74 L +N++N TVGF++ + +F ++ + + + V + G+ Sbjct: 1 MDLDVTGNNIANASTVGFKSSQAQFGDLYASGFLSAGTNPIGDGVRVQDVKQNFGQGNIS 60 Query: 75 STGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 T LD A+ GD +F L + + +R G+F + DG + + Sbjct: 61 FTDNGLDLAINGDGFFVLNNGGEVRYSRAGQFGIDKDGFVTNNQ 104 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGV----TVKRGFLEDSNANSM 207 + + + L S + + G E + + P+ ++K +E+SN + Sbjct: 525 QSLGQVALASFNNTNGLSPVGETTWVETFESGQPIIGAPDTGTLGSIKASSIEESNVDLS 584 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + + I+ ++ I Sbjct: 585 AELVNLIIAQRNYQANAKTIETSDAVTQTVIN 616 >gi|323492338|ref|ZP_08097491.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] gi|323313385|gb|EGA66496.1| flagellar hook protein FlgE [Vibrio brasiliensis LMG 20546] Length = 398 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 10/130 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A L+T++ N++N T GF+ + +F+ V N + VAS Sbjct: 2 SFNIALSGLDATNTELNTISHNIANASTYGFKGARTEFAAVY----NGMQPGGVEVASIS 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG--- 119 + K GS TG +D A+ G +F + G + TR G F D + +G Sbjct: 58 QNFDKN-GSVSGTGRAMDLAINGSGFFITKDTSGQLLYTRSGVFGTDKDNYVTGNTGAKL 116 Query: 120 -KYPVLDMAS 128 Y V + Sbjct: 117 QGYSVDGNNN 126 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 37/174 (21%) Query: 105 RFKVTDDGSLVSASGKYPVL----DMASVPIQIPQKDEI--------------------- 139 DG+L + +G Y V + I I Sbjct: 225 AMTFNADGTLATPTGSYNVAFPAAGANPMSIDINLAGSTQFGASFGVSTNNPNGYTSGEL 284 Query: 140 --FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG 191 V + G + ++ + L QG + + + + P+ + G Sbjct: 285 AGVRVEDNGMVYATYTNGQSQLQGQVVLADFANPQGLAKVSGTAWTQSFSSGAPIMGVPG 344 Query: 192 VT----VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + G LE SN + E+ ++ + + + I N+K + Sbjct: 345 SGTLGDLTPGALEGSNVDLTSELVNLMTAQRNYQANAKTISTNDKLTQALFNAV 398 >gi|237752020|ref|ZP_04582500.1| flagellar hook protein flge [Helicobacter winghamensis ATCC BAA-430] gi|229376587|gb|EEO26678.1| flagellar hook protein flge [Helicobacter winghamensis ATCC BAA-430] Length = 764 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 34/176 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M SF G++ + + + ++N++N +T G+R +F + N I+ Sbjct: 1 MVGSFYNGISGIKTHQFGIDSTSNNIANVNTTGYRGNLPEFKSLFATNLNFINSNSPINN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGI 98 G ++ G+++ + + A G WF + + Sbjct: 61 DYNYGATIGSNAINSNDGTYVKADGDFNVAYSGKGWFVVGLDKSGEFDIKSPNYTGTQQN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 TRDG F + +G LV++SG Y + G ++ + Sbjct: 121 FFTRDGSFSLDGEGYLVNSSGYYMYGINLG------------KIAADGTLTGTNNL 164 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 23/125 (18%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNI----------- 181 + + + G I + I G+ + QG + + N Sbjct: 637 KDIVINKDGIILVNFTNGRTEPIGRFGVAAFVNDQGLSKVGGNLFEMNARTINGQTSVVS 696 Query: 182 -------PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 L L V LE SN ++ + +I + + I ++ M Sbjct: 697 GPPILAWNEDGLAGLKFGQVMDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLM 756 Query: 235 LEAIR 239 EAI+ Sbjct: 757 QEAIQ 761 >gi|144900942|emb|CAM77806.1| flagellar hook protein FlgE precursor [Magnetospirillum gryphiswaldense MSR-1] Length = 430 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 3/116 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + N + A A LS ++DN+SN+ T G++ F +V + V + Sbjct: 4 MGAMNSAVTALKAQSTALSIISDNLSNSSTTGYKANTTSFKTLVTQSYSSTSYASGGVTA 63 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALE---SPRGIILTRDGRFKVTDDGSL 114 G T D AL+GD +F + + TRDG F++ G + Sbjct: 64 SVRQNVAAQGVISGTSNSTDLALDGDGFFVVSYGATGEETFFTRDGEFEIDSAGFM 119 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 12/107 (11%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGF------VRRENSGISPNIPPTPL 186 V +KG I G+ IA + + + G V ++ S Sbjct: 316 SSVEVDKKGVIWAHFDNGQDIAIYKLAVADFTNANGLENQGYGVYQQTSASGDFTLHEAG 375 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 ED T+ LE S ++ E +MI Q +++ + +I Sbjct: 376 EDGV-ATITPSALESSTVDTSDEFTRMIVAQQAYSAASQVISTASDM 421 >gi|317406201|gb|EFV86450.1| flagellar hook protein FlgE [Achromobacter xylosoxidans C54] Length = 495 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 11/136 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A Q L + +N++N+ TVGF++ F++V + + + K++ + Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSSTASFADVYASSRVGLGTKVAAITQRF 61 Query: 64 EYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK- 120 + G E D A++G F + G I+ TR+G F V + +V+A G Sbjct: 62 TVGTVNGGG-----GEYDIAIDGAKGMFRVTDESGAIMYTRNGEFLVDKNNFIVNAQGYR 116 Query: 121 ---YPVLDMASVPIQI 133 YP + + P+++ Sbjct: 117 LTGYPAGAIGANPVEL 132 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 N+G G + + ++ T+ L QG N+ I P + Sbjct: 384 INIGADGSLVAQYTNGETSIVGTIVLADFANLQGLQPVGNNAWKETATSGQPILGQPGSN 443 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + E SN + E+ MI + + + + I ++ M + Sbjct: 444 GLSKVVGQ-ATESSNVDMSKELVNMIIAQRTYQANSQTIKTQDEIMQVLMN 493 >gi|296157456|ref|ZP_06840291.1| fagellar hook-basal body protein [Burkholderia sp. Ch1-1] gi|295892228|gb|EFG72011.1| fagellar hook-basal body protein [Burkholderia sp. Ch1-1] Length = 503 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 10/182 (5%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQKISFVASGKEYLSKEVGS 72 L + +N++N +TVGF++ +F+++ A+ N I +++ G+ Sbjct: 16 DLDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLADVQQQF---SQGT 72 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 ST LD A+ G+ +F L + ++ +R+G F++ +G + +A G + A+ Sbjct: 73 ITSTNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGI 132 Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 I + I+ + GL +Q + ++P + G Sbjct: 133 INTAQTVPLTVPTANIAPQATTKIVAGLNL--NAQDPLMLGTPAVTPTLVTGSTLTTPGA 190 Query: 193 TV 194 T+ Sbjct: 191 TI 192 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISPN----IPPTPLED 188 F +G G ++ Q+ + + L + G V N+ + Sbjct: 391 TSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNNEFQQTSQSGVAQISAPG 450 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G +E+SN + E+ +I + + + I + I Sbjct: 451 STNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQTVDQTLIN 502 >gi|311105935|ref|YP_003978788.1| flagellar hook protein FlgE [Achromobacter xylosoxidans A8] gi|310760624|gb|ADP16073.1| flagellar hook protein FlgE [Achromobacter xylosoxidans A8] Length = 491 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 29/209 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A Q L + +N++N+ TVGF++ F++V + + + + A + Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYAS--SRVGLGVKVAAINQ 59 Query: 64 EYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKVTDDGSLVSASGK- 120 + V E D A++G F + G ++ TR+G F V + +V+A G Sbjct: 60 RFTVGTVNGGGG---EYDIAIDGAKGMFRVTDQSGAVMYTRNGEFLVDKNNFIVNAQGYR 116 Query: 121 ---YPVLDMASVPI--QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENS 175 YP + + P+ Q+P + G + ++D + + N+ Sbjct: 117 LTGYPPGSVGANPVELQLPTANVAPKATSTGT-----------TVANLDANAKVIYETNT 165 Query: 176 GISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 P T + T SN Sbjct: 166 TTDPGSAGTVTLNGVAYTFT-----RSNV 189 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN------SGISPNIPPTPLED 188 N+ G I + +++ T+ L QG N S I P + Sbjct: 380 INISGDGSIVASYTNGETQIVGTIVLADFSNLQGLQPVGNNAWTETSASGQPILGQPGSN 439 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + E SN + E+ MI + + + + I ++ M + Sbjct: 440 GLSKVVGQ-ATESSNVDMSKELVNMIIAQRTYQANSQTIKTQDEIMQVLMN 489 >gi|291519588|emb|CBK74809.1| fagellar hook-basal body proteins [Butyrivibrio fibrisolvens 16/4] Length = 582 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 16/141 (11%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ------ 54 M S G+A + ++ + +N+SN +TV F++ FS+++ Sbjct: 1 MMRSLFSGVAGLKTHQTKMDVIGNNISNVNTVAFKSSATTFSDIMYQTTQQASGATATRG 60 Query: 55 -------KISFVASGKEYLSKEVGSFISTGTELDFAL---EGDAWFALESPRGIILTRDG 104 + + G+ STG LD L +F + + + TR G Sbjct: 61 GTNAKQIGLGVTNGATKVSITSAGAAQSTGDALDIRLTDANSTNFFIVSNGSQNLFTRAG 120 Query: 105 RFKVTDDGSLVSASGKYPVLD 125 F + +G+L + Y V+ Sbjct: 121 SFYIDGNGNLAMTTTGYLVMG 141 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 11/111 (9%) Query: 140 FNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---- 190 +V G+I G + + + + G + ++ + + + Sbjct: 469 LSVQSDGKIFGSYSNGNTVLLGQIAVAQFANASGLEEKGDNCYDTTLNSGEFDGIGIDIS 528 Query: 191 --GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + G LE +N + E MI + F + + +I ++ + E I Sbjct: 529 ADGSAMNTGQLEMANVDLSSEFTDMITTQRGFQANSRIITVSDTMLEELIN 579 >gi|310767290|gb|ADP12240.1| flagellar hook protein FlgE [Erwinia sp. Ejp617] Length = 402 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N+SN+ T GF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYP 122 G+ +T LD A+ +F + G+ +R+G+F + + ++V+ G + Sbjct: 58 -VQDFNDGTTTNTSRGLDVAISSAGFFRMADANGGVFYSRNGQFTLDQNRNIVNMQGLHL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P + + Sbjct: 117 TGYPATGTPPTVQTGANPVALS 138 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + + G + +++ +V+ + L + +G ++ + L Sbjct: 285 PGELTSYQINDDGTLVGTYSNEQTQVLGQIVLSNFANPEGLKSEGDNVWSASAASGQALS 344 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GIAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|85706142|ref|ZP_01037237.1| flagellar hook protein FlgE, putative [Roseovarius sp. 217] gi|85669306|gb|EAQ24172.1| flagellar hook protein FlgE, putative [Roseovarius sp. 217] Length = 448 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 10/144 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N +A A RL+T++DN++N+ T G+R ++ F +V + V Sbjct: 18 ISSSLNASVAGLNANATRLATISDNIANSSTFGYRRVEADFESLVIS-GRGGSYSAGGVR 76 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE---------SPRGIILTRDGRFKVTDD 111 + + L + GS +S+ D A+ + + ++LT G F+ Sbjct: 77 ASTQRLIDQGGSIVSSSNPTDLAVRDRGFLPVARVTDLTVSNGDPQMLLTTTGSFRTDPQ 136 Query: 112 GSLVSASGKYPVLDMASVPIQIPQ 135 G LV+ SG + A+ IP+ Sbjct: 137 GRLVTESGLVLLGWPANPDGTIPE 160 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 17/140 (12%) Query: 116 SASGKYPVLDMASVPIQIPQKDEIF------NVGEKGEI-----SQKGKVIATMGLYSVD 164 ++ G + D P+ I + V G + + ++I + L + Sbjct: 307 TSDGLSQLSDSF-APLSIAKDGSPVGNMTSAEVDANGFVRASFDTGVSRIIYQVPLVDLP 365 Query: 165 MSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 G V + P+ D + ++S + E+ MI + Sbjct: 366 NPNGMVSMDQQTYQPSPDSGSFFLWDAGDGPTGDIVAFARQESATDVARELTDMIQTQRA 425 Query: 220 FNSITTLIDENEKSMLEAIR 239 ++S +I ++ + E Sbjct: 426 YSSNAKVIQTVDEMLQETTN 445 >gi|259908812|ref|YP_002649168.1| flagellar hook protein FlgE [Erwinia pyrifoliae Ep1/96] gi|224964434|emb|CAX55943.1| Flagellar biosynthesis, hook protein [Erwinia pyrifoliae Ep1/96] gi|283478794|emb|CAY74710.1| flgE [Erwinia pyrifoliae DSM 12163] Length = 402 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 7/142 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N+SN+ T GF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKYP 122 G+ +T LD A+ +F + G+ +R+G+F + + ++V+ G + Sbjct: 58 -VQDFNDGTTTNTSRGLDVAISSAGFFRMADANGGVFYSRNGQFTLDQNRNIVNMQGLHL 116 Query: 123 VL-DMASVPIQIPQKDEIFNVG 143 P + + Sbjct: 117 TGYPATGTPPTVQTGANPVALS 138 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + + G + +++ +V+ + L + +G ++ + L Sbjct: 285 PGELTSYQINDDGTLVGTYSNEQTQVLGQIVLSNFANPEGLKSEGDNVWSASAASGQALS 344 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GIAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|254445148|ref|ZP_05058624.1| conserved domain protein [Verrucomicrobiae bacterium DG1235] gi|198259456|gb|EDY83764.1| conserved domain protein [Verrucomicrobiae bacterium DG1235] Length = 510 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 23/160 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS------ 57 + + G++A + + + + +N++N +TV F++ ++K+SE + S Sbjct: 5 ALSSGISALNSFSKGMEVIGNNIANVNTVSFKSSRIKYSETFNQVLKQSAPSPSSGDRSN 64 Query: 58 --------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---IILTRDGRF 106 V G ST D A+ G+ +F +E P+ TR G F Sbjct: 65 VQASQVGLGVQVEGIVGQFHQGGLSSTNQLTDLAISGEGFFLVEDPKNATSQFATRGGDF 124 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 ++ D G LV++ G V + I +VGE G Sbjct: 125 RIDDRGFLVTS-GGMRVQGLTGGSI-----GFEVDVGEDG 158 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 18/123 (14%) Query: 135 QKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISP---------- 179 + F++ ++G I + + L + +R + S Sbjct: 385 PELSRFSIDDQGSIVYFLNNGDSFERGQIQLIDFNDKTALIREGQNLYSSFGAAGVKESQ 444 Query: 180 --NIPPTPLEDLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 NI + +G+ ++++G LE SN + E MI + F + + +I ++ + E Sbjct: 445 NGNIDGLQVAGTNGLGSIQQGALELSNVDLTNEFANMITTQRGFQAGSRIITVSDDILQE 504 Query: 237 AIR 239 + Sbjct: 505 VVN 507 >gi|91785634|ref|YP_560840.1| putative flagellar hook protein FlgE [Burkholderia xenovorans LB400] gi|91689588|gb|ABE32788.1| putative flagellar hook protein FlgE [Burkholderia xenovorans LB400] Length = 503 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 10/182 (5%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVG-----AIKNDIDQKISFVASGKEYLSKEVGS 72 L + +N++N +TVGF++ +F+++ A+ N I +++ G+ Sbjct: 16 DLDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQIGIGTKLADVQQQF---SQGT 72 Query: 73 FISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQ 132 ST LD A+ G+ +F L + ++ +R+G F++ +G + +A G + A+ Sbjct: 73 ITSTNQALDVAINGNGFFQLSNNGSLVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGI 132 Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 I + I+ + GL +Q + ++P + G Sbjct: 133 INTAQTVPLTVPTANIAPQATTKIVAGLNL--NAQDPLMLGTPAVTPTLVTGSTLTTPGA 190 Query: 193 TV 194 T+ Sbjct: 191 TI 192 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQGFVRRENSGISPN----IPPTPLED 188 F +G G ++ Q+ + + L + G V N+ + Sbjct: 391 TSFTIGADGTLTGNYSNQQTAALGQIVLANFSNQNGLVNLGNNEFQQTSQSGVAQISAPG 450 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G +E+SN + E+ +I + + + I + I Sbjct: 451 STNHGVLQGGAVENSNVDLTSELVDLITAQRNYQANAQTIKTQQTVDQTLIN 502 >gi|15895423|ref|NP_348772.1| flagellar hook protein FlgE [Clostridium acetobutylicum ATCC 824] gi|15025147|gb|AAK80112.1|AE007716_1 Flagellar hook protein FlgE [Clostridium acetobutylicum ATCC 824] gi|325509569|gb|ADZ21205.1| Flagellar hook protein FlgE [Clostridium acetobutylicum EA 2018] Length = 423 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 38/162 (23%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + G++ + +L V N++N+ T +++ + FS+ + + Sbjct: 1 MLRAMTSGISGLKVNQNKLDIVGSNIANSSTTAYKSQSINFSDAISETIKGASGATANYG 60 Query: 58 ---------FVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFAL--------------- 92 V S + GS +TG LD A+ +GD +F + Sbjct: 61 GVNPEQITLGVNSSAIITNTASGSVNTTGRNLDVAITDGDGYFMVASGANMADESECINV 120 Query: 93 --------ESPRGI--ILTRDGRFKVTDDGSLVSASGKYPVL 124 +P G TRDG F + ++G+LV+A G+ + Sbjct: 121 STTDHSITSTPSGTDISYTRDGSFNLDNEGNLVTADGRKVLG 162 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 28/128 (21%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPL------- 186 F++G+ G I+ I + + S + G + + + P+ P+ Sbjct: 293 FSIGQDGVITANLDNGSAAAIGQIAMSSFTNAGGLEKEGGNYVKPSASSGQPMVRSGAYS 352 Query: 187 -------------EDLSGV--TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 ED SG + G LE SN + + MI ++ + + +I ++ Sbjct: 353 NKLDPTFISSAKKEDNSGGYGKMYSGALEMSNVDLAQQFSDMIVASRAYQANGKIITTSD 412 Query: 232 KSMLEAIR 239 + + + + Sbjct: 413 EILQDLVN 420 >gi|187925761|ref|YP_001897403.1| hypothetical protein Bphyt_3791 [Burkholderia phytofirmans PsJN] gi|187716955|gb|ACD18179.1| protein of unknown function DUF1078 domain protein [Burkholderia phytofirmans PsJN] Length = 503 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 74/179 (41%), Gaps = 4/179 (2%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKIS-FVASGKEYLSKEVGSFIS 75 L + +N++N +TVGF++ +F+++ ++ + ++ + G+ S Sbjct: 16 DLDVIGNNIANANTVGFKSGAAQFADMYANSVATAVGNQVGIGTKLAEVQQQFSQGTITS 75 Query: 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 T LD A+ G+ +F L + ++ +R+G F++ +G + +A G + A+ I Sbjct: 76 TNQALDVAINGNGFFQLSNNGSMVYSRNGVFQLDKNGFITNAQGLQLMGYAANSSGIINT 135 Query: 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 + I+ + GL +Q + ++P + G T+ Sbjct: 136 AQTVPLTVPTANIAPQATTKIVAGLNL--NAQDPLMLGTPTVTPALVAGSTLTTPGATI 192 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGI----SPNIPPTPLED 188 F +G G ++ + + L + G V N+ + + Sbjct: 391 TSFTIGADGTLTGNYSNRQTAALGQIALANFSNQNGLVNLGNNEFQQTSASGVAQISAPG 450 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G +E+SN + E+ +I + + + I + I Sbjct: 451 STNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANAQTIKTQQTVDQTLIN 502 >gi|639926|gb|AAA61738.1| flagellar hook polypeptide [Borrelia burgdorferi] Length = 190 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 12/120 (10%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI--------DQKISFVASGKEYLS-- 67 R+ V +N++N +T+GF+ +V F +++ + V G S Sbjct: 1 RMDVVGNNIANVNTIGFKKGRVNFQDMISQSISGASRPTDARGGTNPKQVGLGMNVASID 60 Query: 68 --KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD 125 G+F ST D + G+ +F L+ + + TR G F V D LV+ + + Sbjct: 61 TIHTQGAFQSTQKASDLGVSGNGFFILKEGKNLFYTRAGAFDVDSDRHLVNPANGMRIQG 120 >gi|114777402|ref|ZP_01452399.1| hypothetical protein SPV1_13919 [Mariprofundus ferrooxydans PV-1] gi|114552184|gb|EAU54686.1| hypothetical protein SPV1_13919 [Mariprofundus ferrooxydans PV-1] Length = 467 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI----KNDIDQKISF 58 + G + + + + V DN++N +++GF++ V F++V+ Q + Sbjct: 5 NALFSGASGLTSFGEAVRVVGDNIANVNSIGFKSQSVSFTDVLSQTIGVSSTGSQQVGNG 64 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKVTDDGSLVS 116 V G ++ GS +T + D A+ G+ FAL P +R G F++ + +L+ Sbjct: 65 VKIGTISRNQMQGSIQNTSSATDMAINGNGLFALRDPATNQTSYSRAGSFQLDKNFNLID 124 Query: 117 ASGK 120 G Sbjct: 125 GGGN 128 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLSG 191 + G +S G+ A + L + + I +P+ + G Sbjct: 353 DTLTTDSSGTVSGTFTNGQRRALFQVALAKFPNDAVLNHVGGNLMQETIQSGSPVLEKPG 412 Query: 192 ----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T+ LE SN + E ++I + + + + + I ++ + ++ Sbjct: 413 NGGMGTITPYGLEQSNVDLAAEFVKLIVVQRGYEANSKTILTTDQMLSSLMQ 464 >gi|328542111|ref|YP_004302220.1| flagellar hook-basal body protein [polymorphum gilvum SL003B-26A1] gi|326411861|gb|ADZ68924.1| Flagellar hook-basal body protein [Polymorphum gilvum SL003B-26A1] Length = 545 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 8/146 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + G++ +A LST+++N+SN +T G++ + FS +V VAS Sbjct: 6 ALSTGVSGVIAQGSSLSTISNNISNLNTPGYKGSRTLFSHMVTGGGRPGTPVSGSVASLD 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES------PRGIILTRDGRFKVTDDGSLVSA 117 + G+ I+T D AL G +F + R F G LVS+ Sbjct: 66 QRDLTAQGAIINTSRPADLALVGKGFFVVTDSPFVGPETSYFYQRTSSFSENTQGYLVSS 125 Query: 118 SGKYPVL--DMASVPIQIPQKDEIFN 141 G + AS I P E Sbjct: 126 QGLHLQGWRTDASGEIINPASVESIE 151 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEISQKGKVIAT-----MGLYSVDMSQGF-VRRENSGISPNIPPTPLE 187 P F++ E+G + T + + G + P Sbjct: 428 PGVLREFSIDEQGFVIGSYTNGGTRKLWKVAVAIFQDPNGLELVSGGLLREAEQSGRPFF 487 Query: 188 DLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G T+ +E SN + E MI + +++ T +I ++ + E + Sbjct: 488 REAGTSGTATIAPSSIEQSNVDIGTEFSNMIVSQRSYSASTKVITTVDQMLNELMN 543 >gi|294675564|ref|YP_003576179.1| flagellar hook protein FlgE [Rhodobacter capsulatus SB 1003] gi|294474384|gb|ADE83772.1| flagellar hook protein FlgE [Rhodobacter capsulatus SB 1003] Length = 452 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 10/166 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-KISFV 59 + +S N G+A A RL+T++DN++N+ T G++ F +V V Sbjct: 3 ISSSLNAGVAGLAANATRLATISDNIANSGTYGYKRATADFESMVLTQARSSGTYSAGGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII---------LTRDGRFKVTD 110 + L + GS I T +D A+ G + + + + +T G F Sbjct: 63 RASSGRLIDQRGSLIGTSNAMDIAISGRGFLPVANTSALANGLGDQPLTMTSTGSFHTDK 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA 156 DG L + SG + A IP G + + + Sbjct: 123 DGVLRTDSGLVLLGWAALADGTIPVNARDTVTGLQPVVINANQTAG 168 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 10/115 (8%) Query: 135 QKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP---- 185 + E G I + + + L V G +N + Sbjct: 335 GNLTSVEIDENGFIKATYDTGFIRTVYQVPLVDVSNINGLTALDNQTFQVSSTSGSFYLW 394 Query: 186 -LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 D V+ E S + E+ +I + ++S +I ++ + E Sbjct: 395 DAGDGPTGAVEGYAREGSAVDVAQELTNLIQTQRAYSSNAKVIQTVDEMLQETTN 449 >gi|149203100|ref|ZP_01880071.1| flagellar hook protein FlgE, putative [Roseovarius sp. TM1035] gi|149143646|gb|EDM31682.1| flagellar hook protein FlgE, putative [Roseovarius sp. TM1035] Length = 433 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 10/152 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N +A A RL+T++DN++N+ T G+R ++ F VV A V Sbjct: 3 ISSSLNASVAGLNANATRLATISDNIANSSTFGYRRVEADFESVVIA-GRGGSYAAGGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES------PRG---IILTRDGRFKVTDD 111 +G + L + G+ +S+ D A+ + + G ++LT G F+ Sbjct: 62 AGTQRLIDQGGAIVSSSNPTDLAVRDRGFLPVARVTDLVVGNGDPRMLLTTTGSFRADPQ 121 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 G LV+ SG + A+ IP+ + G Sbjct: 122 GRLVTESGLVLLGWPANPDGTIPEFSRDTSTG 153 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 18/119 (15%) Query: 135 QKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP------ 183 NV G + + +++ + L + G V + P+ Sbjct: 316 GNMTSANVDANGFVRATFDTGVSRIVYQVPLVDLPNPNGMVSMDQQTYLPSTDSGSFFLW 375 Query: 184 TPLEDLSGVTV---KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G V ++ +S + E+ MI + ++S +I ++ + E Sbjct: 376 DAGAGPTGDIVAFARQ----ESATDVAGELTDMIQTQRAYSSNAKVIQTVDEMLQETTN 430 >gi|313905151|ref|ZP_07838520.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] gi|313470054|gb|EFR65387.1| fagellar hook-basal body protein [Eubacterium cellulosolvens 6] Length = 247 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 93/252 (36%), Gaps = 17/252 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------Q 54 M SF +G +++L V++N++N + GF+ F+E+V N Q Sbjct: 1 MDMSFWVGSIGASQAQRKLDVVSNNLANVNNNGFKPKNAVFAELVNYNLNAGRDETTELQ 60 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFAL--ESPRGIILTRDGRFKVTDD 111 + + T LD+A+ + +F + ++ I LTRDG F Sbjct: 61 AGAGAIVSATNTDFRSAALTQTNRLLDYAIMTDNQFFQVRDQATGAITLTRDGHFH---A 117 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G + G++ ++ + + Q + G + +G+Y+V Sbjct: 118 GQM--QDGRFVLMTDSDKFVLNTQGQLTYLDVTDGADEGRLAEGQQIGIYTVPFPSRLQN 175 Query: 172 RENSGI--SPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + P+ + TV G LE S + E MI + F+ ++ Sbjct: 176 VGDDDFRVREGDNNNPITLVELPTVVTGALEQSGTDIAKEFTNMIEAQRAFSYNLRMVQT 235 Query: 230 NEKSMLEAIRNI 241 +++ + + I + Sbjct: 236 SDE-VAQTINGL 246 >gi|292487939|ref|YP_003530814.1| flagellar hook protein FlgE [Erwinia amylovora CFBP1430] gi|292899158|ref|YP_003538527.1| flagellar hook protein FlgE [Erwinia amylovora ATCC 49946] gi|291199006|emb|CBJ46117.1| flagellar hook protein FlgE [Erwinia amylovora ATCC 49946] gi|291553361|emb|CBA20406.1| Flagellar hook protein flgE [Erwinia amylovora CFBP1430] gi|312172060|emb|CBX80317.1| Flagellar hook protein flgE [Erwinia amylovora ATCC BAA-2158] Length = 402 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N+SN+ T GF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASGKY 121 G+ +T LD A+ +F + G+ +R+G+F + + ++V+ G + Sbjct: 58 -VQDFNDGTTTNTSRGLDVAISSAGFFRMADANGGVFYSRNGQFTLDQNRNIVNMQGLH 115 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + + + G + +++ +++ + L + +G ++ S L Sbjct: 285 PGELTSYQINDDGTLVGTYSNEQTQLLGQIVLSNFANPEGLKSEGDNVWSSTAASGQALS 344 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GIAGTGNLGTLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|310816852|ref|YP_003964816.1| flagellar hook protein FlgE [Ketogulonicigenium vulgare Y25] gi|308755587|gb|ADO43516.1| flagellar hook protein FlgE [Ketogulonicigenium vulgare Y25] Length = 432 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 9/128 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A +L+T++DN++N+ T G++ + +F +V + Sbjct: 3 ISSSMNAGVAGLSANANKLATISDNIANSSTNGYKRAQTEFYAMVIGSSSTKYTAGGVRT 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES----PRGIIL----TRDGRFKVTDDG 112 + + E G +ST D A+ G + + + G L T G F G Sbjct: 63 TATRVID-ERGPLVSTSNATDIAISGRGFLPVTTLSAIEAGGALPFQMTTTGSFSPNAAG 121 Query: 113 SLVSASGK 120 L +ASG Sbjct: 122 YLTTASGH 129 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 39/155 (25%) Query: 124 LDMASVPIQI----PQKDEIFNVGEKG----EISQKGKVIATMGLYSVDMSQGFVRRENS 175 +D+AS P+ I P + + G +++ G T+ VD S ++ Sbjct: 275 IDVASGPLTINLGVPGQADGMTQLSDGFAPVAVTRDGAPSGTLTGVEVDASGKLYGTYSN 334 Query: 176 GISPNIPPTPLEDLSGVTVKR------------------------------GF-LEDSNA 204 G++ + P+ D+ V + G+ E S Sbjct: 335 GLTRLLYQIPVVDVPNVNGLQALGSQTYAVSQDSGAFFLWDAGAGPTGEMLGYASEGSAV 394 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E+ QMI + ++S +I ++ + E Sbjct: 395 DVATELTQMIQTQRAYSSNAKVIQTVDEMLQETTN 429 >gi|295097203|emb|CBK86293.1| fagellar hook-basal body proteins [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 404 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 20/162 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+ GL+ A + L V +N++N+ T GF+ V F+++ V Sbjct: 2 SFSQGLSGLNAAAKALDVVGNNIANSQTAGFKAGSVAFADIFA------GTTGLGVQVAG 55 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSA-SGKY 121 + G + + LD L+G +F + S G + R+G+FK +G+++++ +G Y Sbjct: 56 VTQNFGDGGLTAGNSSLDMGLQGKGFFRMVSEGGAVYYGRNGQFKQDQNGNIINSTNGLY 115 Query: 122 PVL------------DMASVPIQIPQKDEIFNVGEKGEISQK 151 PI+IP +D G ++ Sbjct: 116 LTGYQATGTPPTIAPGAPVGPIRIPTEDMPPAASTAGSLTGN 157 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 10/118 (8%) Query: 132 QIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENS-GISPNIPPTP 185 Q P K + F +G+ GE+ + +A + L S G N+ P Sbjct: 285 QAPGKYQSFVIGDSGEVVATYSNGQRQTVAQIVLADFANSGGLAAEGNNVWSETPQSGQP 344 Query: 186 LEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG T+ LE SN + EM MI + + S + I + + + Sbjct: 345 FLGTSGSGSFGTINGNMLEQSNVDLGQEMVNMIVYQRNYQSNSQTIKTQSELLQTLVN 402 >gi|237751360|ref|ZP_04581840.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] gi|229372726|gb|EEO23117.1| flagellar hook protein FlgE [Helicobacter bilis ATCC 43879] Length = 600 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 22/143 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + ++ + L ++++N++N +TVG++ +F + + ++ Sbjct: 1 MNDTMLNAVSGIKTHQFGLDSISNNIANVNTVGYKANDPEFKTLFSRSMDSMNASTVTNN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGI 98 V + ++G+ ++ A G WF + + Sbjct: 61 DFSYGVTGASNNVITKMGNLKKADSDTSVAYTGKGWFVVGKNKEGQFEIGEDNFDVSDEN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKY 121 T++G F + DG LV++ G Y Sbjct: 121 YFTKNGDFTIDSDGYLVNSEGYY 143 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 21/123 (17%) Query: 138 EIFNVGEKGEISQ---KGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----- 187 + +G IS G+ I +GL QG + + + N E Sbjct: 474 SNIRINNEGIISVAFTNGQTEAIGRVGLAMFANDQGLKKVGGNLFALNPSTINGEVTQLS 533 Query: 188 -----------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 +L V +G++E SN + + +I + + ++ ++ + E Sbjct: 534 GNPKLVWGEDSNLKQGKVLQGYVETSNVDVADALTNLILMQRGYSMNAKAFTTSDDLIKE 593 Query: 237 AIR 239 AI Sbjct: 594 AIN 596 >gi|148258440|ref|YP_001243025.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] gi|146410613|gb|ABQ39119.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] Length = 466 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 8/128 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + T+ + A ++ ++ N++NT T G++ + FS+++ + S VA Sbjct: 3 ISTALLTAFSGMKAQSYAMANISGNIANTQTPGYKYVDTSFSDLISSQTRKQAVAGSVVA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-------IILTRDGRFKVTDDGS 113 + + + G+ +TGT + A+ G A+F+++ G + TR G F + DG Sbjct: 63 EAR-FTNSVQGALRATGTSTNMAINGPAFFSVQQKTGDSKFSGVPLYTRRGDFTIDKDGY 121 Query: 114 LVSASGKY 121 L++ + Y Sbjct: 122 LMNGADLY 129 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 11/137 (8%) Query: 113 SLVSASGKY--PVLDMASVPIQIPQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDM 165 L ++SG L P + +V +G I + +A G+ + Sbjct: 332 QLATSSGAVTTNTLAQDGYP---AGSLKSLSVTSEGTIVGTFTNDMTAAVAVAGVANFAN 388 Query: 166 SQGFV-RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 S P+ L+G T+ G +E SN++ E ++I Q +++ Sbjct: 389 PNALKPASGGSYEQTRDSGPPIAGLNGATIVGGNVEASNSDVAGEFSKLIATQQAYSANV 448 Query: 225 TLIDENEKSMLEAIRNI 241 ++ +++ M + + I Sbjct: 449 KVMTTSQQMMSDLLNAI 465 >gi|227874517|ref|ZP_03992687.1| flagellar basal body rod protein FlgG [Oribacterium sinus F0268] gi|227839636|gb|EEJ50096.1| flagellar basal body rod protein FlgG [Oribacterium sinus F0268] Length = 305 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 88/307 (28%), Gaps = 101/307 (32%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK----- 55 M + + +A A + +L + +N++N +T GF++ F + + + Sbjct: 1 MLRAMDSAVAGLRAHQNKLDVIGNNIANVNTFGFKSQGYSFKDTMYQTSSTSSGGKQEAS 60 Query: 56 ISFVASGKEYLSKEVGSFISTGT-ELDF-------------ALEGDAWFALESP------ 95 + G GS TG+ DF ++ G +F + Sbjct: 61 GNATIGGANPAQYGYGSL--TGSIATDFTSSTPSYVGGFNASINGSGFFVTSASNKEVTL 118 Query: 96 --------------RGIILTRDGRFKVTDDGSLVSASGKY-------------------- 121 TR G+F V +G +V A+ + Sbjct: 119 DPANTKTTTAEMKKNNFAYTRVGQFSVDANGYIVDANHNFVYGFQPDSLTEPTKYGDGGK 178 Query: 122 -------PVLDMASV------PIQ--IPQKDEIFNVGEKG------------------EI 148 P D P+ + + +G G ++ Sbjct: 179 KLVALRAPAADNTGAVALTGSPVFTGFAAQLKSVEIGADGIVKGIIDNKTPGTGGAPAQV 238 Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-------DLSGVTVKRGFLED 201 + V+ + + S +G + N+ + + + S T+ G+LE Sbjct: 239 TSTSIVLGKVAVASFQNQEGLTKAGNNTFNAGVGDNTGYISATMPGEGSTPTLMAGYLEA 298 Query: 202 SNANSMY 208 SN + Sbjct: 299 SNVDLAK 305 >gi|312115280|ref|YP_004012876.1| flagellar hook-basal body protein [Rhodomicrobium vannielii ATCC 17100] gi|311220409|gb|ADP71777.1| flagellar hook-basal body protein [Rhodomicrobium vannielii ATCC 17100] Length = 413 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 18/199 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N + A LSTVADN++N T G++ +FS +V + Q V Sbjct: 7 LNTSASGMAAQSTALSTVADNIANVSTTGYKRASTEFSTLVASSGAGNYQS-GGVDVDTR 65 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASG---- 119 ST + D A++G+ +F + P G LTR G F+ DG+L +A+G Sbjct: 66 VAIGSQSGTTSTSSSTDLAVDGNGFFIVSGPNGTPALTRAGSFEKQADGTLENAAGYTLL 125 Query: 120 KYPVLDM-------ASVPIQIPQKDEIFNVGEKGEIS-----QKGKVIATMGLYSVDMSQ 167 YPV + I +G ++ Q V L S + + Sbjct: 126 GYPVGTTPSANSYAGLEEVNISDLAMKAVPSTEGTVTFNLPLQATAVTDATKLPSANAAD 185 Query: 168 GFVRRENSGISPNIPPTPL 186 ++ S + N T + Sbjct: 186 ATYTQKTSFTAYNNAGTAV 204 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGE---ISQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + + + G + + G +A T+ L V + PN T Sbjct: 299 KSVEISDDGTLSVVYEDGSSVAAYTIPLAMVASPDNMTVISGNAYLPNQDSGSVQIGTAG 358 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G T+ LE+S+ + E+ +MI + S + + + Sbjct: 359 TNGFG-TIGSYTLENSDVDLATELTRMIQSQNIYQSNAKVFQTGSDLLKVLVN 410 >gi|126730121|ref|ZP_01745933.1| flagellar hook protein FlgE, putative [Sagittula stellata E-37] gi|126709501|gb|EBA08555.1| flagellar hook protein FlgE, putative [Sagittula stellata E-37] Length = 435 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 10/150 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL+T++DN++N+ T G++ ++ +FS +V + N V Sbjct: 3 ISSSLNAGVAGLSANATRLATISDNIANSATQGYKRVETEFSAMVTS-GNSGTYTAGGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE---------SPRGIILTRDGRFKVTDD 111 + L E G+ ++T D A+ G + + + +T F++ + Sbjct: 62 TQTNRLVAEHGALVTTNNATDLAVRGTGFLPVAQATEVLAGNGNPQMFMTTTASFRLDAE 121 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 G L + SG + A+ IP + Sbjct: 122 GYLRTESGLMLLGWRANADGSIPNLARDTS 151 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 17/144 (11%) Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDE------IFNVGEKGEISQ-----KGKVIATMGL 160 G L + +G D P+ I + V E G + VI + L Sbjct: 290 GQLFTNNGLTQRSDSF-APLNIAKDGSPAGNMTSVEVDESGRVYAYFDTGASAVIFQIPL 348 Query: 161 YSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 V G + N P+ D + E+S + E+ MI Sbjct: 349 VDVPNPNGMIALNNQLFQPSAESGSFFLWDAGDGPTGEIVPYAREESTTDVAAELTDMIQ 408 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + ++S +I ++ + E Sbjct: 409 TQRAYSSNAKVIQTVDEMLQETTN 432 >gi|158422271|ref|YP_001523563.1| flagellar hook protein FlgE [Azorhizobium caulinodans ORS 571] gi|158329160|dbj|BAF86645.1| flagellar basal body FlaE protein [Azorhizobium caulinodans ORS 571] Length = 430 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 11/190 (5%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 ++ A +L T++DN++N++T G++ FS ++ S V + Y Sbjct: 9 TSVSGMNAQSNKLGTISDNIANSNTTGYKKATTDFSSLIVDSSTSEYNSGS-VNTKISYD 67 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVTD-DGSLVSASGKYPVL 124 + G+ S+ + D + GD +F ++ G TR G F V G+LV+ +G Y ++ Sbjct: 68 ISKQGTTTSSTSATDMMVNGDGFFVVQDGGGSTYLTRAGSFTVDATTGNLVNTAG-YTLM 126 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPP- 183 I G + I ++ L +V + G + S + Sbjct: 127 GYD---ISKGNNVTPVVNSTAGMVPVN---IGSIALAAVPTTSGTMTANLQSTSAVVSGA 180 Query: 184 TPLEDLSGVT 193 TP + + T Sbjct: 181 TPGGNTAAAT 190 Score = 55.0 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 40/114 (35%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE--- 187 I++ + ++ V G + + + + +V + ++ Sbjct: 318 IKVNSQGIVYAVDGNGNTTN----LYRIPVATVKSPDNLTPVSGNAYQVTQESGAMQIGL 373 Query: 188 -DLSGV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +GV T+K LE+SN + E+ MI + + + + + + + Sbjct: 374 SGSAGVGTIKSNTLENSNVDVASELTDMIVAQRDYTANSKVFQTGTDLLDVLMN 427 >gi|255023259|ref|ZP_05295245.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J1-208] Length = 251 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 22/242 (9%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISFVA 60 A + Q + ++N++N T GF+ ++ SEV+ G + + V Sbjct: 1 AGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVTRQVGTIDYGVR 59 Query: 61 SGKEYLSKEVGSFISTGTELDFALE------GDAWFALESPRGIILTRDGRFKVTDDGSL 114 +++ GS T + DF ++ G +F I L+R G+F G L Sbjct: 60 PAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSDQFGFL 119 Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYSVDMSQGFV 170 +A G +L IQ+ QK G++ + + + +G S + + V Sbjct: 120 RTADGA-NLLSATGEAIQVGQK-TSIRAEANGDLYNAETNQYLGRLGTKFVSANQADSLV 177 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + N T ++ G +E SN + EM Q++ + + +++ Sbjct: 178 KDGEGRLHVNGINTMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQASKNVVNMF 237 Query: 231 EK 232 +K Sbjct: 238 DK 239 >gi|118588735|ref|ZP_01546143.1| hypothetical protein SIAM614_18554 [Stappia aggregata IAM 12614] gi|118438721|gb|EAV45354.1| hypothetical protein SIAM614_18554 [Stappia aggregata IAM 12614] Length = 463 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 78/219 (35%), Gaps = 27/219 (12%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA-SG 62 + N ++ A + L ++ N++N+ T G++ + FS++V + Q++S + Sbjct: 6 AINSAVSGLAAQAKALENISGNVANSQTTGYKRLDTTFSDLVSGGGSKQAQQVSGTTFAT 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALES-----------PRGIILTRDGRFKVTDD 111 + G S + A+ G +F + TR G F+ + Sbjct: 66 SRATNTVQGDITSVDVDTYMAINGPGYFVVTKASDVVDGSTTFADETYYTRAGDFERDKE 125 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-KGKVIATMGLYSVDMSQGFV 170 G L+++SG Y P+ + +G+ + Q + + +A +VD Sbjct: 126 GYLINSSGYYL----QGFPL---DPNTGNAIGDNPTVIQIENQPLAASATTAVDYQANLP 178 Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 R + + L TV G N E Sbjct: 179 RVPATNDYDGTDES--TALLNATVGAG-----NVAVANE 210 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 8/121 (6%) Query: 124 LDMASVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGIS 178 LD P + V G + + + + + L + Q R + + + Sbjct: 343 LDQDGFP---AGELTGVAVDASGRVIASYSNNQQRPVYQIPLATFQAEQDLQRVDGAAFA 399 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G + +E SNA+ E ++I Q +++ + ++ ++ + +A+ Sbjct: 400 ATAGSGDADLSGGGQILAKKVELSNADIADEFSKLIITQQAYSANSRIVTSADEMLDDAL 459 Query: 239 R 239 Sbjct: 460 N 460 >gi|254294563|ref|YP_003060586.1| hypothetical protein Hbal_2209 [Hirschia baltica ATCC 49814] gi|254043094|gb|ACT59889.1| protein of unknown function DUF1078 domain protein [Hirschia baltica ATCC 49814] Length = 458 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ G A A ++ ++N++N +TVGF+ I+ F+ ++ V + Sbjct: 5 SALLAGTAGLRANASAMAATSENIANVNTVGFKRIRNDFTAMLNNQNYQSSYSAGAVRAT 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-------LTRDGRFKVTDDGSLV 115 L +E G+ S+ A+ G+ +F + G TR G+F + G L Sbjct: 65 ATTLMREQGTLQSSSVSTHMAISGEGYFVTRARGGDATSFDEYSYTRAGQFAPDEGGYLK 124 Query: 116 SASGKY 121 + +G+Y Sbjct: 125 NTAGQY 130 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 10/110 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-----PLED 188 +V E G + + + I + + + G + + + Sbjct: 345 SVDVDEDGVVIAQYTNGFSRKIFQVPVATFGNEGGLIAQAGGSYRSGPETGDMNLRAPKS 404 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 V LE S + E +I + +++ + +I ++ + E I Sbjct: 405 GEAGEVISSALESSTVDLAEEFSNLIVTQRAYSAASKIITTADEMLNELI 454 >gi|114762177|ref|ZP_01441645.1| flagellar hook protein FlgE, putative [Pelagibaca bermudensis HTCC2601] gi|114545201|gb|EAU48204.1| flagellar hook protein FlgE, putative [Roseovarius sp. HTCC2601] Length = 432 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 8/143 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ RLS ++DN++N+ T G+R ++ F+ +V + + A Sbjct: 3 ISSSLNAGVSGLAGNASRLSAISDNIANSSTYGYRRVETDFTALVMSSGSQRAYTAGGTA 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--------IILTRDGRFKVTDDG 112 L E G+ +ST D A++G + S ++LT G F++ ++G Sbjct: 63 IDNLRLIDEGGAIVSTSNATDLAVDGIGMLPVASQAQYEATGEPELLLTSTGSFRIDENG 122 Query: 113 SLVSASGKYPVLDMASVPIQIPQ 135 L S +G Y + A++ IP Sbjct: 123 YLASENGYYLMGWPAALDGSIPP 145 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 35/215 (16%) Query: 48 IKNDIDQKISFVASGKEYLSKEVGS-------FISTGTELDFALEGDAWFALESPRGIIL 100 + D Q + + G+ +TG + G F ++ G I Sbjct: 227 VMTDSAQDGAVIGDYTITFDATTGAGGTIATVVETTGGAYN---AGTGLFTVDVAGGPI- 282 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF------NVGEKGEISQ---- 150 F + G +G L + PI I + V E G +S Sbjct: 283 ----EFDIGATG----TTGGLSQLGDSFAPISISKDGSSVGNMVSVEVDENGYVSALYDS 334 Query: 151 -KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNA 204 + +V+ + L + G + + S P+ D +VK ++S Sbjct: 335 GQSQVLYQIPLVDLPNYNGMIAVDGSTFRPSPESGSFFLWDAGDGPTGSVKSYARQESAT 394 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E+ MI + ++S +I ++ + E Sbjct: 395 DIAQELTDMIRTQRAYSSNAKVIQTVDEMLQETTN 429 >gi|229017042|ref|ZP_04173962.1| Flagellar hook protein flgE [Bacillus cereus AH1273] gi|229023223|ref|ZP_04179734.1| Flagellar hook protein flgE [Bacillus cereus AH1272] gi|228738148|gb|EEL88633.1| Flagellar hook protein flgE [Bacillus cereus AH1272] gi|228744313|gb|EEL94395.1| Flagellar hook protein flgE [Bacillus cereus AH1273] Length = 407 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 30/187 (16%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-----------IK 49 M + + A + LS ++N++N TVG++ K F +++ Sbjct: 1 MIKALYTSITGLNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES--PRGIILTRDGRFK 107 + + V G+ TG ++ A+EG+ +F + + TR G F Sbjct: 61 TNPKSIGNGVKMSGTVTDYSDGTITLTGGKVQAAMEGNGFFVVGDSKAGNMEFTRKGTFA 120 Query: 108 VTDDGSLVSASGKYPV------------LDMASVPIQIPQKDEIFNVGEK-----GEISQ 150 ++ D + + G+Y L P+QIP I + G I Sbjct: 121 ISSDYYITNTGGQYVFAYPADPSTGNVDLSGIPGPLQIPMGSAIGGIRTSKGIVGGNIPA 180 Query: 151 KGKVIAT 157 K I Sbjct: 181 DAKHITQ 187 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANS 206 K + + + G ++ N + ++ +G V+ G E +N + Sbjct: 313 KAAGQLAVGMLPNEGGLMKTGNGNFTATNTTGILALGVSGQNGAG-KVRGGAQEGANVDL 371 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E ++ + F +I +++ + E + Sbjct: 372 SVEFVDLMLYQRGFQGNAKVIKISDEVLTEVVN 404 >gi|291538503|emb|CBL11614.1| fagellar hook-basal body proteins [Roseburia intestinalis XB6B4] Length = 547 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 18/144 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG-- 62 ++ + ++ + +N++N +TV F++ V F +V+ + ++ + +G Sbjct: 1 MYSAVSGLKTHQTKMDVIGNNIANVNTVAFKSSSVVFQDVLYQMTSNASGANAATGTGGV 60 Query: 63 -------------KEYLSKEVGSFISTGTELDFALEGD---AWFALESPRGIILTRDGRF 106 G+ +TG D L +F + + + TR G F Sbjct: 61 NAKQIGLGVTTGATNLSITTSGAAETTGRAFDIRLSDQSTTNFFVVNNGSENLFTRAGSF 120 Query: 107 KVTDDGSLVSASGKYPVLDMASVP 130 V G+L S Y V+ P Sbjct: 121 YVDGAGNLCMTSTGYTVMGWQVDP 144 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 11/111 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS---- 190 ++ G I + +++ + + + G + + + + + Sbjct: 434 ISIDNNGLIKGTYDNGNTEILGQIAVAQFANASGLEKVGENCYRTTLNSGEFDGIGVEIS 493 Query: 191 --GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G ++ G LE SN + E QMI + F + + +I ++ + E + Sbjct: 494 ADGSSMTSGELEMSNVDLSTEFTQMIITQRGFQANSRIITTSDTLLEELVN 544 >gi|325109020|ref|YP_004270088.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] gi|324969288|gb|ADY60066.1| fagellar hook-basal body protein [Planctomyces brasiliensis DSM 5305] Length = 572 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 27/223 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------KN 50 ++ L EQ + + +N++N T GF+ V F + Sbjct: 5 SALTTSLNGLALNEQTIDVLGNNIANAGTNGFKASSVLFETQLARTLSVGSRPTTENGGT 64 Query: 51 DIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 + Q S GS S+ + D A++GD +F + G + TR G F ++ Sbjct: 65 NPQQIGLGATSAAILTDFSQGSVTSSTSPSDLAIQGDGFFIVNGSNGNLYTRAGNFNLSS 124 Query: 111 DGSLVSASG----------KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 + SLV+ G + ++ I IP D + + + G +++T L Sbjct: 125 EDSLVTPEGLRVQGYGVDEDFNLVTTQLADINIPLGDLVVA-QQTRNVHIGGAMLSTGDL 183 Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRG-FLEDS 202 + +R +S + + S T+ ++E S Sbjct: 184 AT---QSSILRSVDSLTAAASSTFAADPASAATLLNSLYVEGS 223 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 9/112 (8%) Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLS 190 I + I + + G I G+V+ L QG + + + TP Sbjct: 461 VIDESGVINGIFDNGIIRTLGQVV----LARFSNPQGLLEAGGTNFQEGVSSGTPFLVTP 516 Query: 191 G----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G T++ G +E SN + + +I + + +ID ++ + E + Sbjct: 517 GNFGAGTIRAGAIELSNTDIGRNLVDLIVASTNYRGNARVIDSVQQLVDELL 568 >gi|260574380|ref|ZP_05842384.1| protein of unknown function DUF1078 domain protein [Rhodobacter sp. SW2] gi|259023276|gb|EEW26568.1| protein of unknown function DUF1078 domain protein [Rhodobacter sp. SW2] Length = 435 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 10/144 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-KISFV 59 + ++ + G+A A RL++++DN++N+ T G++ F +V V Sbjct: 3 ISSALSAGVAGLNANATRLASISDNIANSGTYGYKRASTDFESMVITQAAGAGTYSAGGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---------IILTRDGRFKVTD 110 + L E G+ +ST LD A+ G + + G +++T G F+ Sbjct: 63 RASTTRLIDERGALVSTSNALDLAVSGRGMLPVSATAGLGTDLAGTNLMMTTTGSFRPDA 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIP 134 +G L + SG + A+ IP Sbjct: 123 NGVLRTQSGLVLLGWPANADGTIP 146 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 14/112 (12%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPLED 188 V E G ++ + + + L G + N + + Sbjct: 323 VEVDENGYLTASYDTGFTRRLYQIPLVDTPNLNGLIALNNQTYQISPNSGSFFLWDAGDG 382 Query: 189 LSGVTVKRGFL-EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G V G+ E S + E+ +I + ++S +I ++ + E Sbjct: 383 PTGAVV--GYSREGSTTDVAAELTNLIQTQRAYSSNAKVIQTVDEMLQETTN 432 >gi|89056664|ref|YP_512115.1| hypothetical protein Jann_4173 [Jannaschia sp. CCS1] gi|88866213|gb|ABD57090.1| flagellar hook protein FlgE putative [Jannaschia sp. CCS1] Length = 452 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A RL+T+ADN++N+ T G++ FS +V V Sbjct: 16 ISSSLNAGVAGLSVNASRLATIADNIANSGTNGYKRATADFSSMVIDQGGGTYSA-GGVR 74 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWF------ALESPRG----IILTRDGRFKVTD 110 L + G+ +T D A+ G + A+ + G + L G F+ Sbjct: 75 VTTGRLIDQSGALATTNNGTDLAVRGRGFLPVTRSSAVNAAAGAELPLYLATTGSFRTDA 134 Query: 111 DGSLVSASG----KYPVLDMASVP 130 DG LV++SG +P +VP Sbjct: 135 DGYLVTSSGVTLMGWPADADGNVP 158 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 10/111 (9%) Query: 139 IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LED 188 V G + + + + L + G + +N + + D Sbjct: 339 SVEVDPNGFVKANFDVGITRTVYQIPLIDLPNPNGLIAEDNQLYTTSAESGSFFLWDAGD 398 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V LE+S + E+ Q+I + ++S +I ++ + E Sbjct: 399 GPTGDVVAFALEESTTDVAAELTQLIQTQRAYSSNAKIIQTVDEMLQETTN 449 >gi|260429561|ref|ZP_05783538.1| flagellar hook protein FlgE [Citreicella sp. SE45] gi|260420184|gb|EEX13437.1| flagellar hook protein FlgE [Citreicella sp. SE45] Length = 431 Score = 101 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 9/143 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ RL+ ++DN++N+ T G+R ++ F+ +V + Sbjct: 3 ISSSLNAGVSGLSGNASRLAAISDNIANSSTYGYRRVETDFTALVMSSGTRTYTAGGTSV 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL--------ESPRGIILTRDGRFKVTDDG 112 + + G+ +ST D A++G + ++LT G F++ ++G Sbjct: 63 DNLRVVDQG-GALVSTSNATDLAIDGIGMLPVVAVSQYEATGEPELLLTSTGSFRIDENG 121 Query: 113 SLVSASGKYPVLDMASVPIQIPQ 135 L S SG Y + A++ IP Sbjct: 122 YLASESGYYLMGWPANLDGTIPN 144 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 66/215 (30%), Gaps = 35/215 (16%) Query: 48 IKNDIDQKISFVASGKEYLSKEVGSFIS-------TGTELDFALEGDAWFALESPRGIIL 100 + D Q + + GS + TG D A F + G I Sbjct: 226 VMTDSAQAGAVIGEYTITFDNTTGSGGTILSVADITGGVYDGA---TGLFTVNVSGGPI- 281 Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIF------NVGEKGEISQ---- 150 F + G +G L PI I + V E G +S Sbjct: 282 ----EFHIGAVGE----TGGLSQLGDGFAPISISKDGSSVGNMVSVEVDENGYVSALYDS 333 Query: 151 -KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNA 204 + +V+ + L + G + + S P+ D +VK ++S Sbjct: 334 GQSQVLYQIPLADLPNYNGMIAVDGSTFRPSPESGSFFLWDAGDGPTGSVKSYARQESAT 393 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E+ MI + ++S +I ++ + E Sbjct: 394 DIARELTDMIRTQRAYSSNAKVIQTVDEMLQETTN 428 >gi|209521589|ref|ZP_03270287.1| flagellar basal body FlaE domain protein [Burkholderia sp. H160] gi|209497972|gb|EDZ98129.1| flagellar basal body FlaE domain protein [Burkholderia sp. H160] Length = 502 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 78/193 (40%), Gaps = 4/193 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 S+ GL+ A L + +N++N +TVGF++ +F+++ + + + Sbjct: 2 SYQTGLSGLSASSSDLDVIGNNIANANTVGFKSGTAEFADMYANSVATATSQQIGIGTQL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + G+ +T L+ A+ G+ +F + + + +R+G F++ +G + +A G Sbjct: 62 SEVQQQFSQGTITTTNQALNVAINGNGFFQMSNNGTLTYSRNGVFQLDKNGFITNAEGLD 121 Query: 122 PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNI 181 + A+ I + I+ + T GL +Q + ++ Sbjct: 122 LMGYAANSSGIINTAQTVPLTVPTANIAPQATTKITAGLNL--NAQDNIMLGTPTVTAGA 179 Query: 182 PPTPLEDLSGVTV 194 T +G T+ Sbjct: 180 TNTGSLTTTGATI 192 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----D 188 F VG G ++ + + L + G V N+ + Sbjct: 390 TSFTVGSDGTLTGNYSNGQTAALGQIVLANFSNQNGLVDLGNNEYGQTAASGVAQISTPG 449 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G +E+SN + E+ +I + + + I + I Sbjct: 450 STNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANAQTIKTQQAVDQTLIN 501 >gi|330943208|gb|EGH45615.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str. 1704B] Length = 565 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 76/199 (38%), Gaps = 21/199 (10%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ--KISFVASGKEYLSKEVG-SFIS 75 + +N++N T+GF++ + +FS + + + Q V + G + IS Sbjct: 1 MEVAGNNIANVGTLGFKSSRAQFSALYASAQLGAGQHAVGDGVRLASVQQNFNQGETVIS 60 Query: 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG----KYPVLDMASVP- 130 +G LD ++G+ +F + + TR G F +V + G Y D + Sbjct: 61 SGNALDMRIQGNGFFVVSDQGSLAYTRAGAFLKDAANFVVDSDGGRLQGYAANDKGEIAS 120 Query: 131 -IQIPQKDEIFNVGEKGEISQKGKV--------IATMGLYSVDMSQGFVRRENSGISP-N 180 I+ + + NVG + + + +A + + D + R I Sbjct: 121 GIRTDLQIDTSNVGARATTTVAETINLDASLPSLARLPTFDPDDPATYTRVATRTIQDVG 180 Query: 181 IPPTPLEDLSGVTVKRGFL 199 I P P D +K+ F+ Sbjct: 181 ITPVPAADHE---LKQYFV 196 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLSG 191 + VG G + K I + L S G R + + D+ G Sbjct: 452 KSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQPRSDTRWTATADSGVAEYDVPG 511 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 512 VGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 564 >gi|114799551|ref|YP_758981.1| flagellar hook protein FlgE [Hyphomonas neptunium ATCC 15444] gi|114739725|gb|ABI77850.1| flagellar hook protein FlgE [Hyphomonas neptunium ATCC 15444] Length = 434 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 10/133 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+ RL+T++DN++N+ T G++ V FS +V K V Sbjct: 3 ISSSLNAGVMGLSVNGTRLATISDNIANSGTYGYKRSAVDFSSMVLQQKTSA-YAAGGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---------ILTRDGRFKVTDD 111 GS I TG+ D A+ G + G +LT G F ++ Sbjct: 62 VDTYKDIAATGSLIRTGSATDVAISGRGLLPVTDLDGTTNLASNRNMMLTPTGSFFADEN 121 Query: 112 GSLVSASGKYPVL 124 G L + SG + + Sbjct: 122 GYLRTQSGLFLLG 134 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 43/128 (33%), Gaps = 23/128 (17%) Query: 127 ASVPIQIPQKDEIFNVGEKG---EISQKG--KVIATMGLYSVDMSQGFVRRE-------- 173 PI + + E+G I KG + + + + V G + Sbjct: 312 NGSPI---GDLQSIEIDEQGFLQAIYDKGFRRTLYQIPVGDVPNMNGLRALDSQAYSVSN 368 Query: 174 --NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 + + P+ +SG ++ +S + E+ +I + ++S ++ + Sbjct: 369 SSGNLYLWDAGSGPVGGISGYSLM-----ESTTDIASELTDLIETQRAYSSNAKIVQTVD 423 Query: 232 KSMLEAIR 239 + + E Sbjct: 424 EMLQETTN 431 >gi|154252984|ref|YP_001413808.1| hypothetical protein Plav_2542 [Parvibaculum lavamentivorans DS-1] gi|154156934|gb|ABS64151.1| protein of unknown function DUF1078 domain protein [Parvibaculum lavamentivorans DS-1] Length = 454 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 16/156 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + A L ++DN++N+ T+GF+ F ++V A + + V + Sbjct: 6 SMTTAITGIRAQSSALGHISDNIANSQTIGFKRTDTNFQDIVTASTSR-NHLPGAVLAAP 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-----------PRGIILTRDGRFKVTDDG 112 + + GS ++ A+ G +F + + TR G F + G Sbjct: 65 SFTNNVQGSIDASEVPTHMAINGSGFFVVSARVATVDGNPVFDNVNYYTRRGDFSMDKYG 124 Query: 113 SLVSASGKYPVLDMASVPIQ---IPQKDEIFNVGEK 145 LV+ G Y + +A P+ + + Sbjct: 125 YLVNG-GGYTLQGLAIDPVTGNPVGDTPSRIQINRD 159 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 13/136 (9%) Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS---QKGKVI--ATMGLYSV 163 D+G++ + LD P + V E G I+ GK + A + L + Sbjct: 324 DDNGTVKTTE-----LDQNGYP---SGELVSIAVSENGRITGTYSNGKTVDLAQVSLATF 375 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSI 223 + S + + + + G + E SN + E ++I Q + + Sbjct: 376 NASDKLKKLDGTAFAATQESGEPMLGGGGDIIASAREASNVDIADEFSKLIVTQQAYTAG 435 Query: 224 TTLIDENEKSMLEAIR 239 T ++ ++ + E + Sbjct: 436 TRIVTTADELIRETLN 451 >gi|83859391|ref|ZP_00952912.1| flagellar hook protein [Oceanicaulis alexandrii HTCC2633] gi|83852838|gb|EAP90691.1| flagellar hook protein [Oceanicaulis alexandrii HTCC2633] Length = 465 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 23/183 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFV 59 + ++ G + +A L+ ++DN++N +TVG++ + F + S V Sbjct: 3 INSAMAAGASGLIANSSALAAISDNIANVNTVGYKRVDTIFTPNYKIGGGGETRYASSGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALE-------SPRGIILTRDGRFKVTDDG 112 +S G + D A++GD +F + S ++ TR G F+ G Sbjct: 63 SSNSRLDVNSSGLLTPGVSATDMAIDGDGFFVVRPSPTAGGSSDAVLFTRSGGFQTDSSG 122 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRR 172 L + +G Y + V G ++Q + T+ ++ G Sbjct: 123 YLRNDAGMYL---------------YAWPVQADGTVNQNPSNVDTLEAVNLSNIGGTANA 167 Query: 173 ENS 175 +S Sbjct: 168 TSS 170 Score = 58.9 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQ---KGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DL 189 V + G +S G V + + + +V G + Sbjct: 353 VEVSDDGFLSARFTNGVVRRVYQLPVATVFNPNGLASVGGASFQITEDSGAFTLNAPGSG 412 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + T+ +E+SN + E +I + +++ + +I ++ + EAI+ Sbjct: 413 ASGTIAAKTVENSNVDIATEFSNLIITQRAYSASSRIITTADEMLAEAIQ 462 >gi|92116886|ref|YP_576615.1| flagellar basal body FlaE [Nitrobacter hamburgensis X14] gi|91799780|gb|ABE62155.1| flagellar basal body FlaE [Nitrobacter hamburgensis X14] Length = 615 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 15/144 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + N + A L ++ N++N T G++ I FS+++ Q V + Sbjct: 5 DALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQVAGGVTAY 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-----------IILTRDGRFKVTDD 111 G+ ++ A+ GD +F +++P G TR G F+V + Sbjct: 65 ATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRVDNQPQFSGVTYYTRRGDFQVNAN 124 Query: 112 GSLVSASGKY----PVLDMASVPI 131 G+LV+++G Y PV P+ Sbjct: 125 GNLVNSAGYYLMGVPVDPKTGNPL 148 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 8/146 (5%) Query: 104 GRFKVT-DDGSLV--SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI-- 155 G + G L ++SG ++ + + + V G + G+ + Sbjct: 469 GNLTLNLGTGGLTQYASSGGNATVNAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSL 528 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + L + + + + P + + LE SN + E ++I Sbjct: 529 AKVSLSHFNGTNYLKALDGGAYAVTDESGPAIAGAAGHINGSSLEGSNTDIADEFTKLIV 588 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 Q +++ T +I + + + + Sbjct: 589 TQQAYSANTKVITTANSMVQDLLNVL 614 >gi|148256818|ref|YP_001241403.1| putative flagellar hook protein flgE [Bradyrhizobium sp. BTAi1] gi|146408991|gb|ABQ37497.1| putative Flagellar hook protein flgE [Bradyrhizobium sp. BTAi1] Length = 601 Score = 100 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 78/213 (36%), Gaps = 21/213 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + N ++ A L ++ N++N TVG++ I F +++ N Q V + Sbjct: 5 DAMNTSVSGLSAQSFALQNISGNIANASTVGYKGIGTSFEDLIPNATNPTRQNAGGVTAF 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDD 111 + G+ ++ + A+ GD +F ++ ++ TR G F++ + Sbjct: 65 AKATITTQGTVSTSSVATNMAINGDGFFNVQKASSVVDNVPVFTGVTNYTRRGDFQLNAN 124 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G+L++ +G Y ++ +A P + V + + AT + + Sbjct: 125 GNLINGAGYY-LMGVAVDPKTGNATGNVPTVLQFANNFVPAQ--ATTAIQYAANLPTQPK 181 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 SG + L+ + SN Sbjct: 182 TGASGNAATGTLVAAGGLNSADL-------SNV 207 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 5/109 (4%) Query: 138 EIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + V G ++ G+ I A + L + + + + Sbjct: 492 QSVAVNNSGIVTGTFSNGQTINLAQVTLSHFNGTNYLKALDGGAYEATDQSGQAIIGASG 551 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + G LE SN + E ++I Q +++ T +I + + + + Sbjct: 552 KISGGSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVL 600 >gi|312879592|ref|ZP_07739392.1| flagellar basal body rod protein [Aminomonas paucivorans DSM 12260] gi|310782883|gb|EFQ23281.1| flagellar basal body rod protein [Aminomonas paucivorans DSM 12260] Length = 136 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 14/106 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S G++ + L + +N++N +T GF+ V F +++ S Sbjct: 1 MLRSLYSGVSGVKGHQTYLDVIGNNIANVNTTGFKKSNVLFQDLLYQSNRGAMAPNSDAG 60 Query: 61 SGKEY--------------LSKEVGSFISTGTELDFALEGDAWFAL 92 G G TG D A++GD +F + Sbjct: 61 RGGINPMQVGLGVNIAAIETIHTQGPMQYTGNRNDMAIQGDGYFLV 106 >gi|302387788|ref|YP_003823610.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] gi|302198416|gb|ADL05987.1| fagellar hook-basal body protein [Clostridium saccharolyticum WM1] Length = 533 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 31/153 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------ 48 M S G+A + ++ + +N++N +T G++ + F + + Sbjct: 1 MVKSMFAGVAGLRTHQSKMDIIGNNIANVNTWGYKAASMSFKDTMYQTTSSSSGGSTKTG 60 Query: 49 ---KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL------------- 92 + Q V +G G + LD ++G +F + Sbjct: 61 GYGGTNAGQVGYGVTTGSISYDFGKGGMAPSANGLDCMIDGTGFFIVGPMINGGSLPLGE 120 Query: 93 ---ESPRGIILTRDGRFKVTDDGSLVSASGKYP 122 G+ L+R G+F+V +G L SG Y Sbjct: 121 EDALKSSGLYLSRVGKFQVDGNGYLTDDSGNYV 153 Score = 68.5 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 13/113 (11%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----- 187 + + G + S++G V+ + L V + G + +SG + Sbjct: 420 TNYKIQTDGTVVGTSEEGVTIVVGKIALAGVQNTGGLEK--DSGYYYTLGANTGNVSVYE 477 Query: 188 -DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + +LE + + EM +MI + F + + +I ++ + E + Sbjct: 478 GGGTDGRILGNYLEQAKVDLATEMTEMITTQRGFQANSKIITVTDQMLDELVN 530 >gi|149178721|ref|ZP_01857304.1| flagellar hook protein FlgE [Planctomyces maris DSM 8797] gi|148842419|gb|EDL56799.1| flagellar hook protein FlgE [Planctomyces maris DSM 8797] Length = 563 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--------AIKNDIDQ 54 ++ N L E + + +N++N T GF+ V F+ + ++ Sbjct: 5 SALNTSLGGLSLNETSIDVLGNNIANAGTNGFKASNVLFTTQLSRTLSVGSRPTTSNGGT 64 Query: 55 KISFVASG----KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 V G GS ++ + D A++GD +F L+ P G + +R+G F++ Sbjct: 65 NPRQVGLGALSASIRKDFTQGSVTNSTSPSDLAIQGDGFFILDGPDGQVYSRNGNFELNS 124 Query: 111 DGSLVSASG 119 L + SG Sbjct: 125 QSLLTNQSG 133 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 10/115 (8%) Query: 134 PQKDEIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-- 186 P F + E G I+ G + + + L QG + NS + P Sbjct: 445 PGTLASFVIDETGIINGVFDNGIIRTLGQITLSRFSNPQGLLEFGNSTFQEGVSSGPPFL 504 Query: 187 ---EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + T++ G +E SN + + +I + + +I ++ + E + Sbjct: 505 VTPGNFGAGTIRAGSIELSNTDVGRSLVDLIVASTNYRGNARVISSVQQLVDELL 559 >gi|254502675|ref|ZP_05114826.1| conserved domain protein [Labrenzia alexandrii DFL-11] gi|222438746|gb|EEE45425.1| conserved domain protein [Labrenzia alexandrii DFL-11] Length = 477 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 79/219 (36%), Gaps = 24/219 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + N ++ A L ++ N++N+ TVGF+ + FS++V + ++S Sbjct: 6 AINSAVSGLSAQATALENISGNVANSQTVGFKRLDTTFSDLVSGGGSTQADQVSGTTYAT 65 Query: 64 EYLSKEVGSFISTGTELD--FALEGDAWFALES-----------PRGIILTRDGRFKVTD 110 + +G IS ++D A+ G+ +F + TR G F+V Sbjct: 66 SRATNTIGGDIS-SNDVDTYMAINGEGYFVVTQAADFVDGSTTFADDTFYTRAGDFEVNK 124 Query: 111 DGSLVSASGKY----PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIA-TMGLYSVDM 165 +G V+ SG Y P+ P + + + + + + L V Sbjct: 125 EGYFVNQSGYYLKGFPLDPATGNP--VGDNPSVIQINSQPLAASSTTTVNYQASLPRVPA 182 Query: 166 SQGFVRRENSG--ISPNIPPTPLEDLSGVTV-KRGFLED 201 + + + ++ P +L + G LE Sbjct: 183 TTNYDPNTANSELLNDGANGAPGPNLGATEIGDTGTLEA 221 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + E G + + + + + L + Q R + + + + G Sbjct: 368 TNIAIDESGRVIASYSNNQTRALYEIPLATFQAEQSLRRVDGAAFAATSDSGDADLSGGG 427 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V LE SNA+ E ++I Q +++ + ++ ++ + A+ Sbjct: 428 AVISNALELSNADIADEFSKLIITQQAYSANSRIVTSADEMLDSALN 474 >gi|296123915|ref|YP_003631693.1| flagellar basal body FlaE domain protein [Planctomyces limnophilus DSM 3776] gi|296016255|gb|ADG69494.1| flagellar basal body FlaE domain protein [Planctomyces limnophilus DSM 3776] Length = 562 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 12/132 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--------AIKNDIDQ 54 ++ N L E + + +N++N T GF+ V+F + D Sbjct: 5 SALNTSLNGLSLNEVTIDVLGNNIANAGTNGFKASTVRFQTQLARTLSIGSRPTATDGGS 64 Query: 55 KISFVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTD 110 V G GS ++ + D A++G+ +F ++ G TR+G F + Sbjct: 65 NPRQVGLGATTSAISKDFTQGSLSNSTSASDLAIQGEGFFVMDGSSGRTYTRNGNFLRSS 124 Query: 111 DGSLVSASGKYP 122 D LV+ G++ Sbjct: 125 DSYLVNDQGQFV 136 Score = 41.6 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 9/112 (8%) Query: 132 QIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLEDLS 190 I ++ I + + G I G+V+ L S G + + + P Sbjct: 451 VIDEQGLINGIFDNGLIRSLGQVV----LARFANSDGLLEAGGTAFREGVSSGVPQIVSP 506 Query: 191 GV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G T+ G +E SN + + +I + + +I + E + Sbjct: 507 GSFGAGTIASGKIELSNTDIGRNLVDLIVASTNYRGNARVISSVQDLTNELL 558 >gi|289670509|ref|ZP_06491584.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 141 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 15/137 (10%) Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSV 163 G LV+A+G + VLD P+ IP + +G G IS Q ++ M + V Sbjct: 1 GQLVTANG-HAVLDEGGTPMTIPPH-QAMEIGSDGSISIIPQGEGPQTMAIVGKMKV--V 56 Query: 164 DMSQGFVRRENSGISPNIPPTPLEDLS---GVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 D + R G+ N P + + G T+ G LE SN ++ + +MI L ++F Sbjct: 57 DAPADRLTRRPDGLMRNTSTDPAQAFAVATGKTINSGMLEGSNVDAAGALVEMIQLQRQF 116 Query: 221 NSITTLIDENEKSMLEA 237 +I + + A Sbjct: 117 EMQVKIIKNGDDNAQSA 133 >gi|110677963|ref|YP_680970.1| flagellar hook protein FlgE, putative [Roseobacter denitrificans OCh 114] gi|109454079|gb|ABG30284.1| flagellar hook protein FlgE, putative [Roseobacter denitrificans OCh 114] Length = 436 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 14/144 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A QRL++++DN++N+ T G++ ++ F +V + V Sbjct: 3 ISSSLNAGVAGLQTNSQRLASISDNIANSSTFGYKRVQTDFESMVLS-SGGGAYAAGGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG---------IILTRDGRFKVTDD 111 + + L E G+ +ST D A+ G + + LT G F+ D Sbjct: 62 ANTQRLIDERGTLVSTSNSTDLAVRGGGMLPVAQAAQVQTAGTDAPMFLTTTGSFRPDAD 121 Query: 112 GSLVSASG----KYPVLDMASVPI 131 G L S SG +P S+P+ Sbjct: 122 GYLTSQSGLVLMGWPAAADGSIPV 145 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 16/127 (12%) Query: 129 VPIQIPQKDEIF------NVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGI 177 PI + + +V G + + + + I + L +V G ++ Sbjct: 307 APISVTKDGSAIGNFVGVDVDPNGFVRASFDTGEIRTIYQIPLINVPNPNGLQAFDSQTY 366 Query: 178 SPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 P+ D + E+S + E+ MI + ++S +I ++ Sbjct: 367 LPSRQSGAFFLWNAGDGPTGDIVSFAREESTTDVAGELTDMIKTQRAYSSNAKVIQTVDE 426 Query: 233 SMLEAIR 239 + E Sbjct: 427 MLQETTN 433 >gi|295678058|ref|YP_003606582.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] gi|295437901|gb|ADG17071.1| fagellar hook-basal body protein [Burkholderia sp. CCGE1002] Length = 510 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS-- 61 S+ GL+ A L + +N++N +TVGF++ +F+++ + + + Sbjct: 2 SYQTGLSGLSASSSDLDVIGNNIANANTVGFKSGTAEFADMYANSVATATSQQIGIGTKL 61 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG 119 + G+ +T L+ A+ G+ ++ L ++ +R+G F++ +G + +A G Sbjct: 62 SEVQQQFSQGTITTTNQALNVAINGNGFYQLSDNGTLVYSRNGVFQLDKNGFITNAQG 119 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 10/112 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE----D 188 F V G ++ + + L + G V N+ + Sbjct: 398 TSFTVSADGTLTGNYSNGQTAALGQIVLANFANQNGLVNLGNNEYGQTSASGVAQISTPG 457 Query: 189 LSGVTVKRG-FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + V +G +E+SN + E+ +I + + + I + I Sbjct: 458 STNHGVLQGGAVENSNVDLTSELVNLITAQRNYQANAQTIKTQQAVDQTLIN 509 >gi|126734127|ref|ZP_01749874.1| flagellar hook protein FlgE, putative [Roseobacter sp. CCS2] gi|126716993|gb|EBA13857.1| flagellar hook protein FlgE, putative [Roseobacter sp. CCS2] Length = 444 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 21/209 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N +A A RL+T++DN+SN+ T G++ F +V V Sbjct: 3 ISSSLNASVAGLAANATRLATISDNISNSSTYGYKRAVTDFQSMVIESGQGTYSA-GGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI---------ILTRDGRFKVTDD 111 + L E G+ +ST D A+ G + S + LT G F+ Sbjct: 62 TTTSRLIDERGALVSTSNPTDLAVRGRGMLPVTSETSVTVDNGDNPLFLTTTGSFRPDAQ 121 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------GKVIATMGLYSVD 164 G L S G + A+ IP G + + G+ + L SV+ Sbjct: 122 GYLRSPGGLVLLGVPAAADGTIPNYPRD---SIDGLVPVQINANQFAGEATTRVDL-SVN 177 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + R SG S ++ ++L + Sbjct: 178 LPATSTREGASGESESLSVEYFDNLGASS 206 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 16/132 (12%) Query: 124 LDMASVPIQIPQKDE------IFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR 172 L A P+ I + V + G + +V+ + L V G Sbjct: 310 LSDAFAPVSISKNGTPVGSLTSIEVDQNGFVRASFDIGINRVLYQIPLVDVPNVNGLETL 369 Query: 173 ENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 + D + E+S + E+ ++I + ++S +I Sbjct: 370 DQQSYRVTPDSGSFFLWDAGDGPTGDIVGFAREESATDVAGELTELIQTQRAYSSNAKVI 429 Query: 228 DENEKSMLEAIR 239 ++ + E Sbjct: 430 QTVDEMLQETTN 441 >gi|75675292|ref|YP_317713.1| flagellar basal body rod protein, FlaE [Nitrobacter winogradskyi Nb-255] gi|74420162|gb|ABA04361.1| Flagellar basal body rod protein, FlaE [Nitrobacter winogradskyi Nb-255] Length = 613 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 15/144 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + N + A L ++ N++N T G++ I FS+++ Q V + Sbjct: 5 DALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGGVTAY 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-----------IILTRDGRFKVTDD 111 G+ ++ A+ GD +F +++P G TR G F+V Sbjct: 65 ATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQVDAG 124 Query: 112 GSLVSASGKY----PVLDMASVPI 131 G LV+++G Y PV P+ Sbjct: 125 GHLVNSAGYYLMGVPVDPKTGNPL 148 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 8/146 (5%) Query: 104 GRFKVT-DDGSLV--SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI-- 155 G + G L ++SG ++ + + + V G + G+ + Sbjct: 467 GNLTLNIGSGGLTQYASSGGNATINAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSL 526 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + L + + + + + + LE SNA+ E ++I Sbjct: 527 AQVSLSHFNGTNYLKALDGGAYAVTNESGSAIAGASGRISGSSLEGSNADIADEFTKLIV 586 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 Q +++ T +I + + + + Sbjct: 587 TQQAYSANTKVITTANSMVQDLLNVL 612 >gi|317152080|ref|YP_004120128.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] gi|316942331|gb|ADU61382.1| flagellar hook-basal body protein [Desulfovibrio aespoeensis Aspo-2] Length = 535 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 17/132 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------KND 51 +S +G +A +R+ VA+N++N T+GF+ F +++ + + Sbjct: 4 SSLYVGATGVVAHGERMQVVANNLANVSTIGFKKADALFGDLMSSQLGYGGGQFESGSSY 63 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE--SPRGII----LTRDGR 105 Q V+ G +T T D A+ G+ +F + + G + TR G Sbjct: 64 ASQMGQGVSMSAIRTVFAEGGLENTTTTTDLAITGNGFFGVRDTTAGGTMGASHYTRAGS 123 Query: 106 FKVTDDGSLVSA 117 F+ +D LV Sbjct: 124 FRFNNDAYLVDP 135 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 10/108 (9%) Query: 141 NVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL-----S 190 +V G +S G+ + Y G R + D Sbjct: 424 SVDGDGFLSGYFSNGQTEEFYQVANYRFASEWGLRRDGGNNFVATDASGAAMDGKALVGG 483 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + + LE SN + E MI + + + T +I ++ + I Sbjct: 484 RGSFVQNTLEMSNVDMAEEFASMIITQRGYQANTKVITTSDSLLNTLI 531 >gi|295687864|ref|YP_003591557.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] gi|295429767|gb|ADG08939.1| fagellar hook-basal body protein [Caulobacter segnis ATCC 21756] Length = 425 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++ A + LS +++N++N+ T ++T V F +V K + A Sbjct: 6 ALSTAVSGLTAQSRALSAISENIANSSTTAYKTTDVYFQALVSGGKGSSTSTSAVTAKSS 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALE-SPRGII----LTRDGRFKVTDDGSLVSAS 118 + +S G+ ST + A++ +F + P G TR+G F+ DG L++ Sbjct: 66 QAMSV-QGTVTSTSVATNVAIQDAGFFVVTSDPAGAASEDMYTRNGSFETNADGYLINTE 124 Query: 119 GKY 121 G Y Sbjct: 125 GFY 127 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 12/113 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFV------RRENSGISPNIPPTPLED 188 ++ G ++ I + + + G ENS P E Sbjct: 313 ISIDSDGLVTANFDNGISLAIYQIPIATFSNPNGLTLVSGTTYDENSAAGQVHLNLPGEG 372 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +G V LE S + E +MI Q +++ + ++ I+ + Sbjct: 373 GAGSLVAS-ALEGSTTDIATEFNKMIIAQQAYSAASQVVSSASDMFDSLIQAV 424 >gi|188580157|ref|YP_001923602.1| hypothetical protein Mpop_0889 [Methylobacterium populi BJ001] gi|179343655|gb|ACB79067.1| protein of unknown function DUF1078 domain protein [Methylobacterium populi BJ001] Length = 460 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 80/211 (37%), Gaps = 23/211 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ A LS ++ N++N+ T G++ I F +++ + Q VA+ Sbjct: 5 SALQTAVSGLKAQSFSLSNISGNIANSQTTGYKRIDTSFVDML-VDGDARSQTAGSVAAF 63 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALES-----------PRGIILTRDGRFKVTDD 111 E + G+ +STG + AL+G +F + + TR G F D Sbjct: 64 SELTNSVQGNKVSTGVSTNMALDGQGFFVVRKKTTDAGGAESFSNANLFTRRGDFAPDKD 123 Query: 112 GSLVSASGKYPVL---------DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 G LV+ +G Y V + PI+I + I I+ + + + Sbjct: 124 GYLVNGAGAYLVGASLDPVTGQTTGTGPIKI--SNAIIPAKPTTTITYSANLPKSPATTN 181 Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + G + + G P + P V+ Sbjct: 182 AASTGGLLSAFSDGTDPRVTPANGATTGTVS 212 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 6/108 (5%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG 191 VG+ G IS G VI + + G + + L Sbjct: 350 NSVEVGDNGLISGKYSNGSVIGLARVEVAQFVNPDGLKPDSLGNYEQTVASGEAINGLKD 409 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TV +E SN + E +MI Q +++ T ++ + + + + Sbjct: 410 STVVGANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQTMISDLLN 457 >gi|328545575|ref|YP_004305684.1| FlgE protein [polymorphum gilvum SL003B-26A1] gi|326415316|gb|ADZ72379.1| FlgE protein [Polymorphum gilvum SL003B-26A1] Length = 418 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 10/159 (6%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + N +++ A Q LS V+ N++N+ T ++ F+ +V V + Sbjct: 4 MGALNSAISSLYAQSQALSNVSSNLANSQTTAYKASSTSFTSLVAGT---TSSSSGGVVA 60 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSAS 118 E G +S+ + A+EG +F + S TR+G F++ +G L + Sbjct: 61 STRSSVSEQGLLVSSSSSTHLAIEGSGFFVVSSEVSGGQTYYTRNGEFEIDANGYLTNG- 119 Query: 119 GKYPVL---DMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 G Y + D + P+ + + + S G Sbjct: 120 GYYLLGWATDASGNPVAGTSEASLVPIDVDSVKSSVGAT 158 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP----LEDLS 190 +G G ++ + +VI + + + + G N + + L Sbjct: 306 VEIGADGSVTAFFDNGEQRVIYKIPVATFPNANGLTEMSNGIYARSSYSGNSTLHLAGTG 365 Query: 191 GV-TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS---MLEAIR 239 GV T+ G+LE S ++ E +M+ Q +++ + ++ + + +++A+R Sbjct: 366 GVGTINGGYLEASTTDTSTEFSRMLTAQQAYSAASQILSASNEMFQSLMQAVR 418 >gi|293605003|ref|ZP_06687399.1| flagellar hook protein FlgE [Achromobacter piechaudii ATCC 43553] gi|292816608|gb|EFF75693.1| flagellar hook protein FlgE [Achromobacter piechaudii ATCC 43553] Length = 489 Score = 99.7 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 11/201 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F GL+ A Q L + +N++N+ TVGF++ F++V + + + + A + Sbjct: 2 GFGQGLSGLNAAAQNLDVIGNNIANSGTVGFKSATASFADVYAS--SRVGLGVKVAAINQ 59 Query: 64 EYLSKEVGSFISTGTELDFALEG-DAWFALESPRG-IILTRDGRFKVTDDGSLVSASG-- 119 + V E D A++G F L G ++ +R+G F V + +V+A G Sbjct: 60 RFTVGTVQGGGG---EYDIAIDGAKGMFRLTDQSGAVMYSRNGEFLVDKNNFIVNAQGYR 116 Query: 120 --KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGI 177 YP + + P+++ + + A + + + S Sbjct: 117 LTGYPAGAIGANPVELQLPTANVAPKATATGTTVANLDANAKVVYPTDTVTAPAVDGSVT 176 Query: 178 SPNIPPTPLEDLSGVTVKRGF 198 P T D G V G Sbjct: 177 LGGTPYTFTRDALGALVWSGA 197 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRREN------SGISPNIPPTPLED 188 N+G G + + +V+ + L QG N S I P + Sbjct: 378 INIGGDGSLVASYTNGETQVVGNIVLADFSNLQGLQPVGNNAWTETSASGQPILGQPGTN 437 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V + E SN + E+ MI + + + + I ++ M + Sbjct: 438 GMSRVVGQ-ATEASNVDMSKELVNMIIAQRTYQANSQTIKTQDEIMQVLMN 487 >gi|304321120|ref|YP_003854763.1| putative flagellar hook protein [Parvularcula bermudensis HTCC2503] gi|303300022|gb|ADM09621.1| putative flagellar hook protein [Parvularcula bermudensis HTCC2503] Length = 446 Score = 99.7 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 12/134 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A +L+ +ADN+SN++T+G++ +F +V + A Sbjct: 3 ISSSLNAGVAGLATNAVKLAAIADNISNSETIGYKRAVAEFQSLVIDSGPNAYSAGGVRA 62 Query: 61 SGKEYLS-KEVGSFISTGTELDFALEGDAWFALESPRG---------IILTRDGRFKVTD 110 + Y+ + GS I TG D A+ G + + G ++LT G F + Sbjct: 63 T--PYIDVDDQGSLIGTGNATDLAIAGRGLLPVTNQDGAQAVTAERQLLLTATGSFTPDE 120 Query: 111 DGSLVSASGKYPVL 124 DG L + SG + + Sbjct: 121 DGYLRTTSGLFLLG 134 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + P +++G ++ +S + E+ Q+I + ++S +I Sbjct: 380 QSSGDLYLWDAGDGPTGEMAGFSLM-----ESTVDVANELTQLIQTQRAYSSNAKIIQTV 434 Query: 231 EKSMLEA 237 ++ + E Sbjct: 435 DEILQET 441 >gi|163738039|ref|ZP_02145455.1| S-adenosyl-L-homocysteine hydrolase [Phaeobacter gallaeciensis BS107] gi|161388655|gb|EDQ13008.1| S-adenosyl-L-homocysteine hydrolase [Phaeobacter gallaeciensis BS107] Length = 440 Score = 99.7 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 10/150 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL++++DN++N T G++ ++ F +V + V Sbjct: 10 ISSSLNAGVAGLSANASRLASISDNIANASTPGYKRVQTDFHSMVMSSSGGAYSA-GGVR 68 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------ESPRGIILTRDGRFKVTDD 111 + L E G ++T D A+ G + + ++LT F+ D Sbjct: 69 TTNVRLIDERGPLVTTSNATDLAVRGRGMLPVASINEVETGATNPQMMLTTTASFRTNAD 128 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 G L + SG + A IP + Sbjct: 129 GLLATESGLVLMGWPAQSDGTIPPYARDTS 158 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 14/112 (12%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPLED 188 + E G + +V+ + L + G + + P+ E Sbjct: 328 VEIDEAGFVHANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQTYMPSSESGSYFLWNAGEG 387 Query: 189 LSGVTVKRGFL-EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G+ E+S + E+ MI + ++S +I ++ + E Sbjct: 388 PTGDIL--GYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEMLQETTN 437 >gi|163744346|ref|ZP_02151706.1| flagellar hook protein FlgE [Oceanibulbus indolifex HEL-45] gi|161381164|gb|EDQ05573.1| flagellar hook protein FlgE [Oceanibulbus indolifex HEL-45] Length = 422 Score = 99.3 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 12/125 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ IG++ A R+ ++ N++N +TVG+R +F + + + V + Sbjct: 5 SALQIGVSGLQANSSRVQNISSNIANANTVGYRRTFSEF------VTQNTGSTQAGVLTD 58 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESP------RGIILTRDGRFKVTDDGSLVS 116 G+ + T + D A++GD +F + LTR G F +G L + Sbjct: 59 VRANISTNGNIVGTNSTTDLAVQGDGFFVVSRNANDPIESNYYLTRAGSFTPDQNGDLRN 118 Query: 117 ASGKY 121 ++G + Sbjct: 119 SAGYF 123 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 7/89 (7%) Query: 157 TMGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + L +V + + P+ + G ++ LE SN + E+ Sbjct: 332 QVPLANVANPDQMRSVDGNAYVATRDSGAVSLGNPMLNGLG-SINSNALEGSNVDIAQEL 390 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +I + ++S +I +++ + E + Sbjct: 391 TDLIQTQRAYSSSAKIITTSDEMLSETLN 419 >gi|254419105|ref|ZP_05032829.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196185282|gb|EDX80258.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 588 Score = 99.3 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 13/168 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-KISFVASGK 63 G++ A L+ ++ N++N +TVG++ + +F +V + V + Sbjct: 1 MLAGVSGLAANSAALAAISQNIANVNTVGYKRSQGEFQTLVNSQTRAGGSYSAGGVMANT 60 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFA-------LESPRGIILTRDGRFKVTDDGSLVS 116 + G T D A+ G +F + + + TR G F+V + G L + Sbjct: 61 RAFVSQEGQLQRTTASTDLAVSGQGFFVTTTQAENVGATDTRLFTRAGAFRVDNLGYLKN 120 Query: 117 ASGKY----PVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 ++G Y PV D P G + + + + Sbjct: 121 SAGLYLQGWPV-DSNGEIATDPSDLSRLRSVNIGSVGGTAEPTTRVQI 167 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/116 (11%), Positives = 37/116 (31%), Gaps = 12/116 (10%) Query: 135 QKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPP------ 183 + E G ++ + IA + + + + + ++ Sbjct: 471 GNLSEITIDESGFVTAIFDNGVMRRIAQVAIATFPSPDSLKEVSGNAYAVSLESGTFNLK 530 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + LE S + E +I + +++ + +I ++ + E I Sbjct: 531 AAGTGGAGTIAAQ-QLESSTVDLSAEFTGLITTQRAYSASSKIITTADEMLAELIN 585 >gi|167945822|ref|ZP_02532896.1| flagellar basal-body rod protein FlgF [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 141 Score = 99.3 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 14/137 (10%) Query: 40 KFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI- 98 +F + + + + +S GS STG +LD A++G + A+++P G Sbjct: 6 QFRSM--PVFGSGYPTRVYAMDERPDISFIKGSLQSTGNDLDLAVKGAGFIAVQAPDGTE 63 Query: 99 ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------ 152 TR G KV +G L + G PV+ PI +P ++ +G G I+ Sbjct: 64 AYTRRGDLKVDANGMLSNGEG-LPVIGNGG-PISLPAHEQ-IEIGSDGTITILPLGATPE 120 Query: 153 --KVIATMGLYSVDMSQ 167 V+ + L + M + Sbjct: 121 ALAVVDRIKLVNPPMQE 137 >gi|188534170|ref|YP_001907967.1| flagellar hook protein FlgE [Erwinia tasmaniensis Et1/99] gi|188029212|emb|CAO97084.1| Flagellar biosynthesis, hook protein [Erwinia tasmaniensis Et1/99] Length = 402 Score = 99.3 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N+SN+ T GF++ V F+++ K + K++ V Sbjct: 2 GFSQAVSGLNAASSNLDVIGNNISNSATAGFKSSTVAFADMFAGSKVGLGTKVASV---- 57 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIILTRDGRFKVTDDGSLVSASG 119 G+ +T LD A+ +F + G+ +R+G+F + + ++V+ G Sbjct: 58 -VQDFGDGTTTTTSRGLDVAISSAGFFRMADANGGVFYSRNGQFTLDAERNIVNMQG 113 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRREN------SGISPNIP 182 P + + + + G + +++ +V+ + L + +G + S + Sbjct: 285 PGELTSYQINDDGTLVGSYSNEQTQVLGQIVLSNFANPEGLKSEGDNVWSATSSSGQALT 344 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T G T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 345 GTAGTGNLG-TLTAGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 >gi|148254600|ref|YP_001239185.1| flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] gi|146406773|gb|ABQ35279.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. BTAi1] Length = 412 Score = 99.3 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A A L+ ++DN+SN DT G++T F ++V A N V+ Sbjct: 6 ALSSAISALNAQSSSLAMISDNISNADTTGYKTTSGLFEQLVTASSNSKAYSSGGVSVSS 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLVSASG 119 + G +T D A++G +F TR+G F + G L + +G Sbjct: 66 RTNITQQGLLATTTNATDVAIQGSGFFVATDSTSAGGETFYTRNGAFTTDNAGYLEN-NG 124 Query: 120 KY 121 Y Sbjct: 125 YY 126 Score = 40.8 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 12/115 (10%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPP------TPL 186 +VG+ G + G+ + + + + G V N + Sbjct: 298 SSISVGKNGLVEATYSNGQTVPIYKIAVATFADPNGLVAHSNGMYTATATSGNATLQASG 357 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ +G T+ LE S ++ + MI Q +++ + +I K I ++ Sbjct: 358 ENGAG-TIYGSELESSTTDTTGQFSNMISAQQAYSAASQVISAVNKMYDTLISSM 411 >gi|146341767|ref|YP_001206815.1| flagellar hook protein FlgE [Bradyrhizobium sp. ORS278] gi|146194573|emb|CAL78598.1| putative flagellar hook protein FlgE [Bradyrhizobium sp. ORS278] Length = 415 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 15/143 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A A L+ ++DN+SN DT G++T F ++V A + V+ Sbjct: 6 ALSSAISALNAQSSSLAMISDNISNADTTGYKTTSGLFEQLVTASSSSKAYSSGGVSVSG 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP----RGIILTRDGRFKVTDDGSLVSASG 119 + G +T D A++G +F S TR+G F + G + + +G Sbjct: 66 RSNITQQGLLAATTNATDVAIQGSGFFVATSSTAAGGETFYTRNGAFTTDNAGYIEN-NG 124 Query: 120 KY----------PVLDMASVPIQ 132 Y V+ PI Sbjct: 125 YYLEGWRTDASGNVVGSGLEPIN 147 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 12/115 (10%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPP------TPL 186 +VG+ G + G+ + + + + G V + + Sbjct: 301 SSISVGKSGLVEATYSNGQTVPIYKIAVATFADPNGLVAHSSGMYTSTATSGNATLQASG 360 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ +G T+ LE S ++ + MI Q +++ + ++ K I ++ Sbjct: 361 ENGAG-TIYGSELESSTTDTTGQFSNMISAQQAYSAASQVVSAVNKMYDTLISSM 414 >gi|322378866|ref|ZP_08053283.1| flagellar hook protein FlgE [Helicobacter suis HS1] gi|321148676|gb|EFX43159.1| flagellar hook protein FlgE [Helicobacter suis HS1] Length = 601 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 61/143 (42%), Gaps = 21/143 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +TVG+R + +F + A + + ++ Sbjct: 1 MNDTLLHAYSGIKTHQFGIDSLSNNLANINTVGYRENEPEFKSLFAAHFDSMSNNVTADD 60 Query: 58 ---FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGII 99 VA G +S + G ++ + ++ + A +G WF + + + Sbjct: 61 RNFGVAKGSNAISDKDGEYMPSDSDFNMAYQGSGWFIVGPNKDGSFEIDKDGYKQSQENF 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYP 122 TRDG F DG +V+ G Y Sbjct: 121 FTRDGNFLRDADGYIVNTHGYYV 143 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 22/124 (17%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + + G I G + + +G+ + QG + ++ G + + Sbjct: 475 RNMRIDDDGIIHLSFSNGAIETMGRVGIAAFTNDQGLKKVGSNLFDISNATRNGRAVPLS 534 Query: 183 PTPLED-------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P+ L + +LE SN N+ + +I + + ++ + + Sbjct: 535 GNPILGWDRDDGKLKFGKIMHKYLETSNVNAGRSLTNLILMQRGYSMNAKAFTTGDDLIK 594 Query: 236 EAIR 239 EAI Sbjct: 595 EAIN 598 >gi|322380410|ref|ZP_08054616.1| flagellar hook protein FlgE [Helicobacter suis HS5] gi|321147200|gb|EFX41894.1| flagellar hook protein FlgE [Helicobacter suis HS5] Length = 601 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 61/143 (42%), Gaps = 21/143 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +TVG+R + +F + A + + ++ Sbjct: 1 MNDTLLHAYSGIKTHQFGIDSLSNNLANINTVGYRENEPEFKSLFAAHFDSMSNNVTADD 60 Query: 58 ---FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGII 99 VA G +S + G ++ + ++ + A +G WF + + + Sbjct: 61 RNFGVAKGSNAISDKDGEYMPSDSDFNMAYQGSGWFIVGPNKDGSFEIDKDGYKQSQENF 120 Query: 100 LTRDGRFKVTDDGSLVSASGKYP 122 TRDG F DG +V+ G Y Sbjct: 121 FTRDGNFLRDADGYIVNTHGYYV 143 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 22/124 (17%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + + G I G + + +G+ + QG + ++ G + + Sbjct: 475 RNMRIDDDGIIHLSFSNGAIETMGRVGIAAFTNDQGLKKVGSNLFDISNATRNGRAVPLS 534 Query: 183 PTPLED-------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 P+ L + +LE SN N+ + +I + + ++ + + Sbjct: 535 GNPILGWDRDDGKLKFGKIMHKYLETSNVNAGRSLTNLILMQRGYSMNAKAFTTGDDLIK 594 Query: 236 EAIR 239 EAI Sbjct: 595 EAIN 598 >gi|146341930|ref|YP_001206978.1| putative flagellar hook protein flgE [Bradyrhizobium sp. ORS278] gi|146194736|emb|CAL78761.1| putative Flagellar hook protein flgE [Bradyrhizobium sp. ORS278] Length = 601 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 11/130 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + N ++ A L ++ N++N TVG++ I F +++ N Q V + Sbjct: 5 DAMNTSVSGLSAQSFALQNISGNIANASTVGYKGIGTSFEDLIPNATNPTRQNAGGVTAF 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDD 111 + G+ ++ + A+ GD +F ++ ++ TR G F++ + Sbjct: 65 AKATITTQGTVSTSSVATNMAINGDGFFNVQKATSVVDNVPVFTGVTNYTRRGDFQLNAN 124 Query: 112 GSLVSASGKY 121 G+L++ +G Y Sbjct: 125 GNLINGAGYY 134 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 5/109 (4%) Query: 138 EIFNVGEKGEIS---QKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + V G ++ G+ I A + L + + + + Sbjct: 492 QSVAVNNSGIVTGTFSNGQTINLAQVTLSHFNGTNYLKALDGGAYEATDQSGQAIIGASG 551 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + G LE SN + E ++I Q +++ T +I + + + + Sbjct: 552 KISGGSLEGSNTDIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVL 600 >gi|254475161|ref|ZP_05088547.1| flagellar hook protein FlgE [Ruegeria sp. R11] gi|214029404|gb|EEB70239.1| flagellar hook protein FlgE [Ruegeria sp. R11] Length = 441 Score = 99.0 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 10/152 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ A RL++++DN++N+ T G++ ++ F +V V Sbjct: 10 ISSSLNAGVSGLTANASRLASISDNIANSSTAGYKRVQTDFHSMVMGSSGGTYSA-GGVR 68 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALE---------SPRGIILTRDGRFKVTDD 111 + L E G +ST D A+ G + S ++LT F+ D Sbjct: 69 TTNVRLIDERGPLVSTNNATDLAVRGRGMLPVTSMTEVEVGASNPQMMLTTTASFRTNAD 128 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVG 143 G L + SG + A IP + G Sbjct: 129 GLLATESGLVLMGWPAQSDGTIPPYARDTSDG 160 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 14/112 (12%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPLED 188 + E G + +V+ + L + G + + P+ E Sbjct: 329 VEIDEAGFVRANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQTYMPSSESGSYFLWNAGEG 388 Query: 189 LSGVTVKRGFL-EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G+ E+S + E+ MI + ++S +I ++ + E Sbjct: 389 PTGDIL--GYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEMLQETTN 438 >gi|163793271|ref|ZP_02187246.1| flagellar basal body FlaE domain protein [alpha proteobacterium BAL199] gi|159181073|gb|EDP65588.1| flagellar basal body FlaE domain protein [alpha proteobacterium BAL199] Length = 433 Score = 99.0 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 G++A A Q ++DN++N +T+G++ +F +V + V + Sbjct: 6 GMFSGVSALAAQSQAFGIISDNIANVNTIGYKDTTARFQTLVTESSSSSRYSPGGVLARP 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-------ILTRDGRFKVTDDGSLVS 116 ++ G T + D +L GD +F + +LTR G F ++G+LV+ Sbjct: 66 FVNPEKQGLLQGTTSNTDISLVGDGFFIVNENDDPLTSGGEYLLTRAGSFTEDEEGNLVN 125 Query: 117 ASGKY 121 A+G + Sbjct: 126 AAGFF 130 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGI-----SPNIPP 183 P + +G ++ + I + + +V + + S ++ Sbjct: 315 PSALTAVEIDNEGVVTARFKNGDTRPIYKIAIGTVPAATELRSENGNAYKLSSRSGDLLL 374 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 T ++ LE S + E +I + +++ T LI ++ + E IR Sbjct: 375 TEAGLQGAGAIESSALEQSTVDLSDEFTDLIITQRAYSAATKLITTGDELLDEIIR 430 >gi|85715029|ref|ZP_01046014.1| Flagellar basal body rod protein, FlaE [Nitrobacter sp. Nb-311A] gi|85698226|gb|EAQ36098.1| Flagellar basal body rod protein, FlaE [Nitrobacter sp. Nb-311A] Length = 640 Score = 99.0 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 12/151 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + N + A L ++ N++N+ T G++ I F +++ Q V + Sbjct: 32 DALNTSVGGLQAQSFALQNISGNIANSQTTGYKGITTAFVDLIPDSTTPNRQVAGGVTAY 91 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-----------IILTRDGRFKVTDD 111 G+ ++ A+ GD +F +++P G TR G F+V Sbjct: 92 ATPTISSQGTVSASTVGTYMAINGDGFFNVQTPTGRVDNQPQFSGVTYYTRRGDFQVDAH 151 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 G LV+++G Y ++ +A P + V Sbjct: 152 GHLVNSAGYY-LMGVAVDPKTGNPLGNVPQV 181 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 8/146 (5%) Query: 104 GRFKVT-DDGSLV--SASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI-- 155 G + G L ++SG ++ + + + + G + G+ + Sbjct: 494 GNLTLNIGSGGLTQYASSGGNATINAINQNGYAAGQLQSVAINNDGIVVGTFSNGQNLSL 553 Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A + L + + + + P + + LE SN + E ++I Sbjct: 554 AQVSLSHFNGTNYLKALDGGAYAVTDESGPAIAGAAGHISGSSLEGSNTDIADEFTKLIV 613 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 Q +++ T +I + + + + Sbjct: 614 TQQAYSANTKVITTANSMVQDLLNVL 639 >gi|126738557|ref|ZP_01754262.1| flagellar hook protein FlgE, putative [Roseobacter sp. SK209-2-6] gi|126720356|gb|EBA17062.1| flagellar hook protein FlgE, putative [Roseobacter sp. SK209-2-6] Length = 446 Score = 98.6 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ N G++ A L+ ++DN++N+ T G++ I+ F +V K V Sbjct: 16 ISSALNAGVSGLSANASSLAAISDNIANSSTRGYKRIQTDFQSMVVGSKGGSYTA-GGVG 74 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWF------ALESPRG---IILTRDGRFKVTDD 111 K L E G + T D A+ G +ES G ++LT G F+ D Sbjct: 75 FDKLRLVDERGPLVGTNNATDLAVSGRGMLPVAALSEVESGNGNPTMMLTTTGSFRTNAD 134 Query: 112 GSLVSASGKYPVLDMASVPIQIPQK 136 G L +ASG + A+ + Sbjct: 135 GYLTTASGLVLMGWPANANGTVDDG 159 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDL 189 V +G + KVI + L + G + P+ D Sbjct: 334 VEVDAQGYVRANYDSGASKVIYKVPLADMANPNGLKALDKQTYLPSSQSGSYFLWDAGDG 393 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V +E+S + E+ MI + ++S +I ++ + E Sbjct: 394 PTGEVASYSMEESATDVATELTDMIKTQRAYSSNAKVIQTVDEMLQETTN 443 >gi|90422996|ref|YP_531366.1| hypothetical protein RPC_1485 [Rhodopseudomonas palustris BisB18] gi|90105010|gb|ABD87047.1| protein of unknown function DUF1078-like [Rhodopseudomonas palustris BisB18] Length = 599 Score = 98.6 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 12/129 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + +A L ++ N++N+ T F+ I F +++ ND S A + Sbjct: 6 ALTTSVAGLRTQSYALENISGNIANSQTTAFKRIDTSFLDLIPQTGNDQQLAGSVTAKSR 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDDG 112 + GS S A+ GD +FA++ P TR G F + +G Sbjct: 66 S-TNTIQGSVQSASVSTYMAINGDGFFAVQKPGSFSDNNPVFTGVNNYTRRGDFSLDKNG 124 Query: 113 SLVSASGKY 121 LV+ +G Y Sbjct: 125 YLVNGAGYY 133 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 +V +G + G+ I A + + + + + R + G Sbjct: 490 TSVSVSNEGRVVGAYSNGRNIDLAEVSVATFNGANFLKRLDGGAFEVTNESGAALFGKGG 549 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE SN + E ++I Q +++ T +I + + + Sbjct: 550 SISGSSLEASNTDIADEFTKLIVTQQAYSANTKVITTANTMVSDLLN 596 >gi|297568486|ref|YP_003689830.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus AHT2] gi|296924401|gb|ADH85211.1| fagellar hook-basal body protein [Desulfurivibrio alkaliphilus AHT2] Length = 636 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 G++ ++ ++ + DN++N +TV ++ + F V+ + ++ + + Sbjct: 5 NMMFNGMSGINSMAGNMAVLGDNVANINTVSYKNSQTTFQNVLTSSQDRFHEVGNGSQIQ 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 + G T D A+ G +F + G + TRDG+F + + + +G Y Sbjct: 65 AISKNFRPGPLEQTTKATDMAIGGKGFFMVNDYNGETLYTRDGQFDLKVEDY--TPAGFY 122 Query: 122 PVLDMASVPIQ 132 ++ A +Q Sbjct: 123 NLVTPAGYRVQ 133 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIP------PTPL 186 + +V G I G+ A + L G + N+ + TP Sbjct: 523 QNVSVKPDGTIVGNYSNGQSHDQAQVMLADFANYHGLIPGSNNTYQASAQSGDPVIGTPG 582 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G V LE SN + + + + F + + I ++ +R Sbjct: 583 SGVFG-QVLGSSLEGSNVDLARQFADLTMTQRIFQANSKSITTADEIHQTLMR 634 >gi|77464881|ref|YP_354385.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1] gi|126463723|ref|YP_001044837.1| hypothetical protein Rsph17029_2963 [Rhodobacter sphaeroides ATCC 17029] gi|221640802|ref|YP_002527064.1| hypothetical protein RSKD131_2703 [Rhodobacter sphaeroides KD131] gi|332559780|ref|ZP_08414102.1| FlgE2 [Rhodobacter sphaeroides WS8N] gi|77389299|gb|ABA80484.1| putative flagellar hook protein [Rhodobacter sphaeroides 2.4.1] gi|126105387|gb|ABN78065.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221161583|gb|ACM02563.1| Hypothetical Protein RSKD131_2703 [Rhodobacter sphaeroides KD131] gi|332277492|gb|EGJ22807.1| FlgE2 [Rhodobacter sphaeroides WS8N] Length = 465 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 10/144 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFV 59 + +S N G+A A +L+T+ADN++N+ T G++ F +V N V Sbjct: 3 ISSSLNAGVAGLNANATKLATIADNIANSGTYGYKRADADFESMVITQSANGGSYAAGGV 62 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------ESPRGIILTRDGRFKVTD 110 + +E G+ +ST + LD A+ G + +++TR G F Sbjct: 63 RANTIRRVEEWGAPVSTASALDIAISGRGMLPVIRETSLGASSGNEALLMTRTGSFATDP 122 Query: 111 DGSLVSASGKYPVLDMASVPIQIP 134 G L + +G + A+ IP Sbjct: 123 SGVLKTDTGLVLLGWPATADGTIP 146 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPT-----PLEDLSGVTVKRGFLEDSNANSM 207 +VI + L V G N + + D V E S + Sbjct: 371 RVIYQVPLVDVPNYNGLTALNNQTFAISPDSGNFYLWDAGDGPTGDVLGYAREGSTTDVA 430 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + ++S +I ++ + E Sbjct: 431 TELTNLIQTQRAYSSNAKIIQTVDEMLQETTN 462 >gi|157781876|gb|ABV72264.1| FlgE [Azospirillum brasilense] Length = 297 Score = 98.2 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN G+ A + L T+++N++N T GF+ + +FS+ V + + + V + + Sbjct: 7 FNNGVLGLTAQNRALGTISNNIANASTSGFKASETQFSDFVLSDRTGNKDPGNGVRAFER 66 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALES---------------PRGIILTRDGRFKVT 109 L G+ T + A+ G+ +F ++ + LTR G F Sbjct: 67 -LDHSGGTVTRTDITTNAAINGNGFFIVQDLAAQAGTTATTAQTSDDSVFLTRSGDFSPD 125 Query: 110 DDGSLVSASGK 120 +G LV+ +GK Sbjct: 126 KEGRLVNGAGK 136 >gi|56695115|ref|YP_165462.1| flagellar hook protein FlgE, putative [Ruegeria pomeroyi DSS-3] gi|56676852|gb|AAV93518.1| flagellar hook protein FlgE, putative [Ruegeria pomeroyi DSS-3] Length = 431 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+AA A RL+T++DN++N+ T G++ ++ F +V A V Sbjct: 3 ISSSLNAGVAALSANASRLATISDNIANSSTYGYKRVETDFHALVNASGRGKYTA-GGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-------LTRDGRFKVTDDGS 113 + + L + GS +ST D A+ G + + L G F+ D+G Sbjct: 62 TTTQRLIDQRGSLVSTSNSTDLAVRGRGMLPVMRSSQLALPQQDMLLATTGSFRTDDEGY 121 Query: 114 LVSASGKYPVLDMASVPIQIPQ 135 L S +G + A+ IP Sbjct: 122 LKSEAGLVLMGWRANPDGSIPN 143 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 17/144 (11%) Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIF------NVGEKGEISQ-----KGKVIATMGL 160 G L ++ G + D P+ I + V E G + + + + L Sbjct: 286 GQLGASDGITQLSDTF-APVSITKDGTAVGTMSRVEVDENGFVYAFFDNGVSRRVFQIPL 344 Query: 161 YSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 + G V ++ P+ D + E+S + E+ MI Sbjct: 345 VDMPNPNGLVALDSQTYEPSRESGTFFLWDAGDGPTGDLVSFAREESTTDVATELTAMIQ 404 Query: 216 LTQKFNSITTLIDENEKSMLEAIR 239 + ++S +I ++ + E Sbjct: 405 TQRAYSSSAKVIQTVDEMLQETTN 428 >gi|115522802|ref|YP_779713.1| flagellar hook protein FlgE [Rhodopseudomonas palustris BisA53] gi|115516749|gb|ABJ04733.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris BisA53] Length = 421 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A + Q L+ ++DN++N+ TVG++T F +V + + V Sbjct: 6 ALSSAISALNSQSQSLAMISDNIANSQTVGYKTTSALFDSLVTSSSSASSYSSGGVTVLS 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP---RGIILTRDGRFKVTDDGSLVSASGK 120 + G +T + D + G+ +F + + + TR G F + D G +V+ASG Sbjct: 66 KSNISSQGLLTTTTSSTDIGISGNGFFPVSTALNGGSTLYTRAGSFTIDDSGYMVNASGA 125 Query: 121 YPVL 124 Y + Sbjct: 126 YLLG 129 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 10/114 (8%) Query: 138 EIFNVGEKGEISQKGKVIATMGLYSVD------MSQGFVRRENSGISPNIPPTPLEDLSG 191 VG+ G+++ T+ LY + Q V+ + T + SG Sbjct: 307 SSVAVGDDGKVNATYSNGTTISLYKIPVATFAAPDQLQVKSNGLYAATADSGTAIVQQSG 366 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T++ G LE S A++ E MI Q +++ + +I + I + Sbjct: 367 SNGAGTIQGGKLEASTADTNTEFSNMISAQQAYSAASQVITAVNEMFDTLISAV 420 >gi|312164118|gb|ADQ38281.1| flagellar hook protein [Azospirillum brasilense] Length = 291 Score = 98.2 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN G+ A + L T+++N++N T GF+ + +FS+ V + + + V + + Sbjct: 7 FNNGVLGLTAQNRALGTISNNIANASTSGFKASETQFSDFVLSDRTGNKDPGNGVRAFER 66 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALES---------------PRGIILTRDGRFKVT 109 L G+ T + A+ G+ +F ++ + LTR G F Sbjct: 67 -LDHSGGTVTRTDITTNAAINGNGFFIVQDLAAQAGTTATTAQTSDDSVFLTRSGDFSPD 125 Query: 110 DDGSLVSASGK 120 +G LV+ +GK Sbjct: 126 KEGRLVNGAGK 136 >gi|254464969|ref|ZP_05078380.1| flagellar hook protein FlgE [Rhodobacterales bacterium Y4I] gi|206685877|gb|EDZ46359.1| flagellar hook protein FlgE [Rhodobacterales bacterium Y4I] Length = 435 Score = 98.2 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 9/143 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G++ A RL++++DN++N+ T G++ ++ F +V + + V Sbjct: 3 ISSSLNAGVSGLSANASRLASISDNIANSSTRGYKRVQTDFHSMVLS-GSGGTYSAGGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES-----PRG---IILTRDGRFKVTDDG 112 + L E G +ST D A+ G + S G ++LT G F+ G Sbjct: 62 TTNVRLIDERGPLVSTNNATDLAVRGRGMLPVASITEVEAGGSPSMMLTSTGSFRTDSSG 121 Query: 113 SLVSASGKYPVLDMASVPIQIPQ 135 L + SG + A +P Sbjct: 122 YLSTESGLVLMGWPAQADGTLPD 144 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 10/111 (9%) Query: 139 IFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LED 188 V GE+ S KVI + L V G ++ P + Sbjct: 322 SVEVNASGEVIASYDSGDTKVIYKVPLADVSNINGMQALDSQTYKPTDDSGAFYLWDAGE 381 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + E+S + E+ MI + ++S +I ++ + E Sbjct: 382 GPTGEILGYAQEESAVDVATELTDMIKTQRAYSSNAKVIQTVDEMLQETTN 432 >gi|224436455|ref|ZP_03657469.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313142967|ref|ZP_07805160.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] gi|313127998|gb|EFR45615.1| flagellar hook protein FlgE [Helicobacter cinaedi CCUG 18818] Length = 745 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 22/143 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M ++ + + L ++++N++N +T+G+R +F + + ++ Sbjct: 1 MNSTLINSYSGIKTHQFGLDSISNNIANVNTIGYRRNIPQFESLFSTNMDSLNADSPINN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGI 98 +S GS+ ++ E + A EG WF + E + Sbjct: 61 DMNYGATKSSNAISTRSGSYKASDGEFNVAYEGKGWFVVGEQKSGSFEIKDDGYEKKQKN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKY 121 TRDG F +G +V+ SG Y Sbjct: 121 YFTRDGSFLRDGEGYIVNTSGYY 143 Score = 66.6 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 20/122 (16%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + + G I G + + +G+ + QG + + G + I Sbjct: 621 RDVRIDKDGIIFLAFDNGAYEPMGRVGIAAFVNDQGLRKVGGNLFEMTEMVVNGDASTIS 680 Query: 183 PTPLEDLSGVTVKRG-----FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P+ G+ +K G LE SN + + ++I + + ++ + + EA Sbjct: 681 GKPILGWEGLNLKFGSVLYKHLETSNVDVGNALTELIVMQRGYSMNAKAFTTGDDLVKEA 740 Query: 238 IR 239 + Sbjct: 741 LN 742 >gi|163742565|ref|ZP_02149951.1| flagellar hook protein FlgE, putative [Phaeobacter gallaeciensis 2.10] gi|161384150|gb|EDQ08533.1| flagellar hook protein FlgE, putative [Phaeobacter gallaeciensis 2.10] Length = 440 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 10/150 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N G+A A RL++++DN++N+ T G++ ++ F +V + V Sbjct: 10 ISSSLNAGVAGLTANASRLASISDNIANSSTAGYKRVQTDFHSMVMSSSGGTYSA-GGVR 68 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES---------PRGIILTRDGRFKVTDD 111 + L E G +ST D A+ G + S ++LT F+ D Sbjct: 69 TTNVRLIDERGPLVSTSNATDLAVRGRGMLPVTSMNEVETGAANPQMMLTTTASFRTNAD 128 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 G L + SG + A IP + Sbjct: 129 GLLATESGLVLMGWPAQSDGTIPPYARDTS 158 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 14/112 (12%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPLED 188 + E G + +V+ + L + G + + P+ E Sbjct: 328 VEIDEAGYVHANYDTGVSRVVYQVPLVDLPNPNGMIAMDRQTYMPSSESGSYFLWNAGEG 387 Query: 189 LSGVTVKRGFL-EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G+ E+S + E+ MI + ++S +I ++ + E Sbjct: 388 PTGDIL--GYAREESATDVAGELTNMIQTQRAYSSNAKVIQTVDEMLQETTN 437 >gi|117926844|ref|YP_867461.1| hypothetical protein Mmc1_3570 [Magnetococcus sp. MC-1] gi|117610600|gb|ABK46055.1| protein of unknown function DUF1078 domain protein [Magnetococcus sp. MC-1] Length = 496 Score = 97.8 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 22/139 (15%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---FV 59 + G +A ++ + +N+SNT+T F+ + F +V+ + S Sbjct: 5 QAMYAGSSALTNYGNAMTVIGNNLSNTNTTAFKGSRTTFEDVLIQTVGISGTRASTQIGT 64 Query: 60 ASGKEYLSK--EVGSFISTGTELDFALEGDAWFALESPR-----------------GIIL 100 G + + + G F T T D A++G +F + Sbjct: 65 GVGVSAIDQLMQQGGFAGTSTVTDLAIDGQGFFKVRDANPGSAQLGGGGGNATSSMDTFY 124 Query: 101 TRDGRFKVTDDGSLVSASG 119 TR G FK DG +V+ +G Sbjct: 125 TRAGDFKQNLDGYMVTNAG 143 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 10/111 (9%) Query: 138 EIFNVGEKGEI---SQKGKVIA--TMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG 191 E +VG G I G+ A +GL D Q + + + + P E Sbjct: 382 ESLSVGLDGTINGTYTNGETKALYQIGLVDFDNEQALDQVGANLFAETHLSGVPREGEPN 441 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T++ LE+SN + EM MI + F + + LI + + E I Sbjct: 442 SGALGTIRSYTLENSNVDMSNEMVNMITTQRAFQANSRLITVTDGMLEELI 492 >gi|209966998|ref|YP_002299913.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] gi|209960464|gb|ACJ01101.1| flagellar hook protein FlgE [Rhodospirillum centenum SW] Length = 655 Score = 97.4 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + A + L ++DN++N+ T+G++ ++ F ++ + + V + Sbjct: 6 AMTTAVGGLTAQSRSLGHISDNIANSQTIGYKRVETSFQNLITQSNSSV-HSPGGVRARP 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI----------ILTRDGRFKVTDDGS 113 Y + G+ T + A+ G +F + + TR G F + +G Sbjct: 65 SYTNNIQGNVSQTQFATNMAISGSGFFQVSRGEEVSGTVNFQSQAYFTRAGDFSLDKNGY 124 Query: 114 LVSASGKY 121 L +++G Y Sbjct: 125 LRNSAGYY 132 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP------L 186 + GE+ +V+A + ++ V G + + + Sbjct: 541 RDLTILASGEVVANYDNGRSRVLAQIPIFQVSNPNGMQKTDGNAYVATTDSGAVRASGAG 600 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +G V +E SN + E ++I + +++ T ++ ++E + Sbjct: 601 ENGAGNLVVS-SIEGSNVDIADEFTKLIVTQRAYSANTRVVTSANDMLVEVLN 652 >gi|167945179|ref|ZP_02532253.1| hypothetical protein Epers_01140 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 126 Score = 97.4 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 14/121 (11%) Query: 132 QIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRENSGISPNIP--- 182 +P +G G +S I + L QG ++ + Sbjct: 6 TVPNDATSVTIGSDGIVSVLQAGNTDPTQIGQIELAYFANPQGLEPIGDNLFRESAASGG 65 Query: 183 ---PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P D +G T+ +G LE SN N + E+ MI + + + I ++ ML I Sbjct: 66 VNTAIPGSDSTG-TLMQGALESSNVNVVEELVNMIETQRAYEMNSKAISTTDE-MLSYIN 123 Query: 240 N 240 N Sbjct: 124 N 124 >gi|296535149|ref|ZP_06897378.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] gi|296264524|gb|EFH10920.1| flagellar hook protein FlgE [Roseomonas cervicalis ATCC 49957] Length = 436 Score = 97.4 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 21/193 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + A ++ V++N++N+ T G++ + F+E + ++ S V++ Sbjct: 8 SLYAATSGLGAQTAAITNVSNNVANSQTTGYKRVDTAFAEQLSQSTARLN-GSSTVSAAP 66 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGI------------ILTRDGRFKVTDD 111 G L A+ G+ FA+ P G TR+G F T + Sbjct: 67 VATVSRGGDISQVENPLALAISGNGLFAVSRPAGTDANGNTVFSPTQFYTRNGDFSKTAE 126 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G LV+ SG Y + P + N G+ G I A + + Sbjct: 127 GYLVNTSG-YALEGW-------PVANGAVNRGQLGLIQVDEAPYAPEATTQIGIGANLPA 178 Query: 172 RENSGISPNIPPT 184 P Sbjct: 179 SGTETSYSTQVPV 191 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 10/115 (8%) Query: 134 PQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT---- 184 P + E GE+ K + IA + + + + G R + + Sbjct: 318 PGAYTGVGIKENGEVVVSYDNGKSRTIAQVPIVTFQNADGLQREDGQAFTATQAAGQFRV 377 Query: 185 -PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + T+ +E SN + E +MI + +++ + ++ M E + Sbjct: 378 LAAGEQGTGTLATSSIEASNVDITSEFSKMIVAQRAYSANSRVLSTVSGLMSETV 432 >gi|327398495|ref|YP_004339364.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] gi|327181124|gb|AEA33305.1| flagellar hook-basal body protein [Hippea maritima DSM 10411] Length = 719 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 17/165 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--------GAIKNDI 52 M S G++ + +Q + V +N++N +T+GF+ ++ F +V+ G N Sbjct: 1 MLRSLWSGVSGLKSEQQGMDVVGNNVANVNTIGFKKGRINFVDVLSQTMSAATGPEGNIG 60 Query: 53 DQKISFVASGKEYL----SKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRF 106 + + + G GS +T D A++GD +F + G TR G F Sbjct: 61 GKNAAQIGLGTTVAVVDNIFSQGSLQATSKITDLAIQGDGFFVVSDDGGKTYRYTRAGDF 120 Query: 107 KVTDDGSLVSASGKYP---VLDMASVPIQIPQKDEIFNVGEKGEI 148 DG+LV+ G + + + I E V + + Sbjct: 121 SFDADGNLVNPEGFIVQGWLANEETHKINTAASIENIVVPQDKTV 165 Score = 68.5 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 12/140 (8%) Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 +F + + + G YP + I I Q + + G K +A + + Sbjct: 584 QFSLPSQTTAQTQDG-YP--GGSLQRIMINQDGVVVGIFSNG----KSYPLAQIAMAKFA 636 Query: 165 MSQGFVRRENSGISPNI-PPTPL----EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 ++G ++ S S PL T LE SN + E MI + Sbjct: 637 NNEGLMKEGGSMYSETANSGAPLIGTAGTGGRGTFAPSHLEMSNVDLAEEFTNMIIYERA 696 Query: 220 FNSITTLIDENEKSMLEAIR 239 F + + I +++ + E + Sbjct: 697 FQANSRSITTSDQMIQELLN 716 >gi|600722|gb|AAA92801.1| flagellar hook FlgE [Helicobacter mustelae] Length = 403 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 18/118 (15%) Query: 24 DNMSNTDTVGFRTIKVKFSEVVGAI--------------KNDIDQKISFVASGKEYLSKE 69 +N++N +T GF+ + F +++ +ND+ + V Sbjct: 1 NNIANVNTTGFKYSRASFVDMISQTKLIATSPHKGGLGGQNDVSVGLG-VNVNSTTKVFS 59 Query: 70 VGSFISTGTELDFALEGDAWFALESPRGII--LTRDGRFKVTDDGSLVSASGKYPVLD 125 GS +T + D A+EGD +F + RG TRDG F +G+LV+ +G Y V Sbjct: 60 QGSTQNTDVKTDLAIEGDGFFIISPDRGKTQNFTRDGEFLFDANGNLVT-NGGYVVQG 116 >gi|170737038|ref|YP_001778298.1| flagellar basal body FlaE domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169819226|gb|ACA93808.1| flagellar basal body FlaE domain protein [Burkholderia cenocepacia MC0-3] Length = 389 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 6/114 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI LA A+ +L+ +++N++N+ T+GF++ + F+ + N + +S ++ + Sbjct: 2 SFNIALAGINAINGQLNQISNNIANSGTLGFKSGRANFAS---SYINAMPSGVSIGSTSQ 58 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVS 116 G+F +TG LD A+ G +F G + +R G F + +G++ Sbjct: 59 SMDVT--GNFSATGRGLDAAIAGKGFFISRDTDGSMVFSRAGVFNIDKNGNVTD 110 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 12/113 (10%) Query: 140 FNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ E G I GK + + + + G V + SG + P Sbjct: 278 VSLAEDGSIEVQYSNGKKLSAGQLAIATFQNENGLVPVDGSGWQASSATGEPLIGKPGTG 337 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++G + +E SN + E+ ++ Q + + + ++ + M ++ + Sbjct: 338 MAG-KLAVRAVEQSNVDMTAELVSLMGAQQNYQANSKVLSTENEMMRALMQAL 389 >gi|89067517|ref|ZP_01155030.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] gi|89047086|gb|EAR53140.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] Length = 433 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 10/144 (6%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +S N +A A RL+T+ADN++N+ T G++ F +V V Sbjct: 3 ISSSLNASVAGLTANASRLATIADNIANSSTFGYKRATTDFHSMVLNTTEGTYSA-GGVR 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESP---------RGIILTRDGRFKVTDD 111 + L + GS +ST D A+ G + + +LT G F+V D Sbjct: 62 VTTQRLIDQRGSIVSTDNVTDLAVRGRGMMPVSTEAALGTGNASSQFLLTSTGSFRVDDQ 121 Query: 112 GSLVSASGKYPVLDMASVPIQIPQ 135 G L S SG + A + +P Sbjct: 122 GYLASQSGLILMGWPAGIDGNVPA 145 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 5/92 (5%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDLSGVTVKRGFLEDSNANSM 207 KVI + L V G + D + LE+S + Sbjct: 339 KVIYQIPLVDVSNVNGLETLDQQTYRATPESGSYFLWDAGDGPTGDLLSYALEESATDVA 398 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ ++I + ++S +I ++ + E Sbjct: 399 GELTELIQTQRAYSSNAKVIQTVDEMLQETTN 430 >gi|27380965|ref|NP_772494.1| hypothetical protein bll5854 [Bradyrhizobium japonicum USDA 110] gi|27354131|dbj|BAC51119.1| bll5854 [Bradyrhizobium japonicum USDA 110] Length = 754 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 12/151 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + N + A L ++ N++N+ T G++ I F +++ Q V + Sbjct: 5 DAMNTSVGGLQAQSYALQNISGNIANSSTTGYKGIGTSFVDLIPDASVPSKQVAGGVTAN 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-----------IILTRDGRFKVTDD 111 + G+ S+ + A+ GD +F+++ TR G F++ + Sbjct: 65 AKATITTQGTISSSSVATNMAITGDGFFSIQKATSVVDNLPQFGGVTYYTRRGDFQLNSN 124 Query: 112 GSLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 G+LV+ +G Y ++ + P + + V Sbjct: 125 GNLVNGAGYY-LMGVTVDPKTGNPQGNVATV 154 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 +A + L + + + + P D + T+ LE SN + E ++I Sbjct: 667 LAQVSLSHFNGTNYLKALDGGAYAATEQSGPAIDGASGTISGSSLEGSNTDIADEFTKLI 726 Query: 215 HLTQKFNSITTLIDENEKSMLEAIRNI 241 Q +++ T +I + + + + Sbjct: 727 VTQQAYSANTKVITTANSMVQDLLNVL 753 >gi|256370963|ref|YP_003108787.1| protein of unknown function DUF1078 domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007547|gb|ACU53114.1| protein of unknown function DUF1078 domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 431 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 15/202 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---- 56 M S + ++ A ++ L +A+N++N +T G+++ + +F++++ ++ + Sbjct: 1 MTKSLSSAISGIEANQEWLDNIANNIANANTTGYQSTQTEFADLLYQQQSAAGGPVPGQT 60 Query: 57 ---------SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFK 107 S V G+ + TGT D A++G + + TRDG + Sbjct: 61 GGTNPLVVGSGVRVSATPTDFSQGTIVQTGTSTDVAIQGQGFLVVNQGGQNYYTRDGALQ 120 Query: 108 VTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVG-EKGEISQK-GKVIATMGLYSVDM 165 + G LV+ASG + + + Q+ Q + + +G+++Q T+G Sbjct: 121 LDGAGQLVTASGALVMGWVPNAAGQVNQNAPLAALTIPQGQVAQPVATSTITLGGNLPAG 180 Query: 166 SQGFVRRENSGISPNIPPTPLE 187 S V +G P P++ Sbjct: 181 SSNPVVVTTTGYDDLGNPVPIQ 202 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 21/135 (15%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI---SQKG--KVIATMGLYSVDMSQGF 169 V+ YP +A F +G G I G +V+ + L +QG Sbjct: 306 VTNQNGYPSGALAG-----------FTIGSDGVIEGTYANGRTQVLGQIALAQFANAQGL 354 Query: 170 VRRENSGISPNI-PPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 ++ N + P G + G LE SN + E+ ++ + + T Sbjct: 355 SKQGNLLYAATTNSGAPQLGSPGAAGLGQLVGGALESSNVSIGSELTNLVVAQTDYQANT 414 Query: 225 TLIDENEKSMLEAIR 239 ++ + ++ Sbjct: 415 KVVQTTATVLQSLVQ 429 >gi|242280400|ref|YP_002992529.1| hypothetical protein Desal_2938 [Desulfovibrio salexigens DSM 2638] gi|242123294|gb|ACS80990.1| protein of unknown function DUF1078 domain protein [Desulfovibrio salexigens DSM 2638] Length = 528 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 23/165 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS----- 57 +S + L + N++N +T +++ + + I Sbjct: 4 SSMYTAATGVKSHGVLLQQIGANLANVNTTAYKSGDTFLETLASQSSGKANSGIVSGGIS 63 Query: 58 -------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP--RGIILTRDGRFKV 108 ++ + GSF +T + D A+ G +F + P TR G F Sbjct: 64 TPGQIGLGTRVATTRINFKEGSFETTNSSTDIAIGGQGFFRVADPVSNASRYTRAGSFHF 123 Query: 109 TDDGSLVSAS----GKYPVLDMAS-----VPIQIPQKDEIFNVGE 144 +G LV + Y + D + I +P K+E G Sbjct: 124 DKNGQLVDSHKNILQGYKIDDDGNIGSTSQNIVLPMKEETDTYGN 168 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 14/113 (12%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + + G +S + + LY+ G R ++ S I E + GV Sbjct: 414 QNVSFSPDGIMSALFSNGMSAELYQVNLYNFKNEFGLRREGSNYFSATIDS--GEAIQGV 471 Query: 193 -------TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +V LE SN + E MI + F + + I + + A+ Sbjct: 472 ARKDGLGSVVSNSLETSNVDLADEFAYMILTQRGFQANSKGITTTDSMINTAL 524 >gi|307945688|ref|ZP_07661024.1| flagellar basal body FlaE domain protein [Roseibium sp. TrichSKD4] gi|307771561|gb|EFO30786.1| flagellar basal body FlaE domain protein [Roseibium sp. TrichSKD4] Length = 459 Score = 96.7 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + N ++ A + L ++ N++N+ T G++ + F+++V + ++S Sbjct: 6 AINSAVSGLTAQSRALENISGNVANSQTTGYKRLDTTFADLVSGGGSRQATQVSGTTYAT 65 Query: 64 EYLSKE-VGSFISTGTELDFALEGDAWFALESPRGI-----------ILTRDGRFKVTDD 111 + G + A+ G+ +F + + TR G F+ + Sbjct: 66 SRATNTLQGDIAARDVGTYMAINGEGYFIVTEANAVVDGTTSFEETDYYTRAGDFERDQN 125 Query: 112 GSLVSASGKY 121 G LV++SG Y Sbjct: 126 GYLVNSSGYY 135 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 48/189 (25%) Query: 99 ILTRDGRFKVTDDGSL--------VSASGK------YPVLDMASVPIQIPQKDEIFN--- 141 TR G+ DGSL V+ +G V D+++ + + Sbjct: 268 AYTRLGQAAFNADGSLNAITAGTGVAVNGNTFEIASLQVGDVSAANVNLNFGSNSLTQFA 327 Query: 142 -------------------------VGEKGEISQ-----KGKVIATMGLYSVDMSQGFVR 171 V G ++ + + + + L + + R Sbjct: 328 ANSGAASSVDLAQDGYPAGELVGIAVDSSGRVNASYSNSQTRALYEIPLATFEAEFELRR 387 Query: 172 RENSGISPN-IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 + + + P+ S + +E SNA+ E ++I Q +++ + ++ Sbjct: 388 VDGAAFAATSTSGAPVLISSNGNIVPEAVELSNADIATEFSKLIVTQQAYSANSRIVTSA 447 Query: 231 EKSMLEAIR 239 ++ + A+ Sbjct: 448 DEMLDSALN 456 >gi|291532057|emb|CBK97642.1| fagellar hook-basal body proteins [Eubacterium siraeum 70/3] Length = 503 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 14/136 (10%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS------------GKEYL 66 + + +N++N +T GF+T F EV K + + G Sbjct: 1 MDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQVGYGTKLGAIGQ 60 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 F + + D AL GD +F + G I +R G F V + G+LV ++G VL Sbjct: 61 VMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNLVDSNGNM-VLG 119 Query: 126 MASVPIQIPQKDEIFN 141 ++ + Sbjct: 120 VSGDATGVDASSNRIT 135 Score = 79.7 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 10/131 (7%) Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSVDMSQGFVRRE 173 G + D Q + + + E G I V + + + + D G + Sbjct: 370 GNIKMTDGRVAATQTVKDLDSVYINEDGTIYGIHSVHGIIMLGRIDIVTFDNPNGLEQVG 429 Query: 174 NSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +S + P +++G +V G LE SN + E MI + F + + +I Sbjct: 430 SSYWRETLSSGQPQVNIAGENGSASVVSGALEMSNVDLSQEFSDMIITQRGFQANSRIIT 489 Query: 229 ENEKSMLEAIR 239 ++ + E + Sbjct: 490 TSDTMLEEIVN 500 >gi|291558205|emb|CBL35322.1| fagellar hook-basal body proteins [Eubacterium siraeum V10Sc8a] Length = 503 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 14/136 (10%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS------------GKEYL 66 + + +N++N +T GF+T F EV K + + G Sbjct: 1 MDVIGNNIANVNTTGFKTSVTTFQEVYYQTKKNGSAGSNLQGGVNPSQVGYGTKLGAIGQ 60 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 F + + D AL GD +F + G I +R G F V + G+LV ++G VL Sbjct: 61 VMGQSGFTYSDSVYDCALSGDGFFQVMDEAGNIFYSRAGVFNVDNAGNLVDSNGNM-VLG 119 Query: 126 MASVPIQIPQKDEIFN 141 ++ + Sbjct: 120 VSGDATGVDASSNRIT 135 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 10/131 (7%) Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV-----IATMGLYSVDMSQGFVRRE 173 G + D Q + + + E G I V + + + + D G + Sbjct: 370 GNIKMTDGRVAATQTVKDLDSVYINEDGTIYGVHSVHGIIMLGRIDIVTFDNPNGLEQVG 429 Query: 174 NSGISPNIP-PTPLEDLSG----VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 +S + P +++G +V G LE SN + E MI + F + + +I Sbjct: 430 SSYWRETLSSGQPQVNIAGENGSASVVSGALEMSNVDLSQEFSDMIITQRGFQANSRIIT 489 Query: 229 ENEKSMLEAIR 239 ++ + E + Sbjct: 490 TSDTMLEEIVN 500 >gi|83955135|ref|ZP_00963791.1| putative flagellar hook protein [Sulfitobacter sp. NAS-14.1] gi|83840464|gb|EAP79637.1| putative flagellar hook protein [Sulfitobacter sp. NAS-14.1] Length = 433 Score = 96.3 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 10/128 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFV 59 + ++ G++ A + + ++++N++N++TVG+R F+ +V + + V Sbjct: 3 ISSALQTGVSGLRANSKAVGSISENIANSNTVGYRRG---FAHMVTTTASGGNGDGVLSV 59 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI------ILTRDGRFKVTDDGS 113 + +E G IST + D A+ G+ +FA+ +LTR G F + G+ Sbjct: 60 NAVEELDISTAGGLISTNSSTDLAIGGNGFFAVSMNPNETVQTNYMLTRAGSFLPDEQGN 119 Query: 114 LVSASGKY 121 L +A+G Y Sbjct: 120 LKNAAGYY 127 Score = 68.1 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 141 NVGEKGE---ISQKG--KVIATMGLYSVDMSQGFVRREN-----SGISPNIPPTPLEDLS 190 + E G + G + + + + V G V + SG + + + Sbjct: 322 EITEDGTLFGVFDNGMRRALYDIPVAVVANPNGLVEVKGNAYRLSGETGSFSALQANSST 381 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + EM +I + F++ +I + M E R Sbjct: 382 VGSINAGALEGSNVDIAQEMTDLIKAQRAFSTNAKVITTVDDMMDETTR 430 >gi|34497159|ref|NP_901374.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] gi|34103016|gb|AAQ59379.1| flagellar hook protein flgE [Chromobacterium violaceum ATCC 12472] Length = 393 Score = 96.3 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 21/185 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF I L+ A+ +L +V+DN++N+ T GF++ +V F+ Q + A+ Sbjct: 2 SFEIALSGINAVNNQLGSVSDNIANSGTYGFKSGRVTFASAYAG-----SQAMGVNANPN 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYP 122 G ++TG LD A++G ++ S G + +R G F DG LV G Sbjct: 57 SQNIGRNGGLVNTGRALDAAIDGRGFYVSRSVAGAVSYSRVGIFDTDKDGYLVDNYGG-R 115 Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 V A E G + G + G + S N + Sbjct: 116 VQGYAQ--------------SEGGALGALGDIQIPTGNIAAKPSDQLKYSGNMSAGWAVQ 161 Query: 183 PTPLE 187 P + Sbjct: 162 TVPFD 166 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 48/119 (40%), Gaps = 12/119 (10%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVR------RENSGISPNIP 182 P ++GE GE+ + + +V+A + + + +E+S P + Sbjct: 276 PGARTGVSLGENGEVIVSYSNDQKQVVARLAIANFANQGALTAASQTSWQESSASGPALL 335 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++G V LE SN + E+ ++ + + + T +I + M ++ + Sbjct: 336 SPAGSNMAGKLVTS-SLEQSNVDVTSELVSLMTAQRNYQANTKVISTENQVMQALMQAV 393 >gi|170751911|ref|YP_001758171.1| hypothetical protein Mrad2831_5543 [Methylobacterium radiotolerans JCM 2831] gi|170658433|gb|ACB27488.1| protein of unknown function DUF1078 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 461 Score = 96.3 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 13/141 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ ++ + +S ++ N++N+ T G++ I F +++ D + S +A Sbjct: 5 SALQTSVSGLQSQSYAISNISGNIANSQTTGYKRIDTSFVDLMSEKTPDREIAGSVLAKS 64 Query: 63 KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDD 111 + + G+ +S+ + A+ G +F + G TR G F D Sbjct: 65 -QLTNTLAGNIVSSSVPTNMAINGQGFFTVVQKTGDANGATTFGGTDLYTRRGDFAQDKD 123 Query: 112 GSLVSASGKYPVLDMASVPIQ 132 G LV+ +G Y + PI Sbjct: 124 GYLVNGAGGY-LTGSNLDPIT 143 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 VG G+++ G V+A ++G+ + G N + P Sbjct: 351 TSVAVGPDGKVNGTFSNGSVVALASVGVVQFANADGLKADTNGNYLQTVDSGPPLSGLNG 410 Query: 193 TVKRGFL-EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G E SN + E +MI Q +++ T ++ + M + + Sbjct: 411 STISGASNEQSNTDIASEFSKMIVTQQAYSANTRVMSTAQTMMSDLLN 458 >gi|115523522|ref|YP_780433.1| flagellar basal body FlaE domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115517469|gb|ABJ05453.1| flagellar basal body FlaE domain protein [Rhodopseudomonas palustris BisA53] Length = 602 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 16/139 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + +A A L ++ N++N+ T F+ I F +++ + Q V Sbjct: 6 ALTTSVAGLRANSYALENISGNIANSQTTAFKRIDSSFLDLIPQTGVN-QQLAGSVTFAS 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP----------RGI-ILTRDGRFKVTDDG 112 + GS + A+ GD +F ++ P G+ TR G F + +G Sbjct: 65 RSTNTVQGSVSAASVSTFMAINGDGFFVVQKPGSFADNNPIFDGVNRYTRRGDFSLDKNG 124 Query: 113 SLVSASGKYPVLDMASVPI 131 LV+ +G Y VPI Sbjct: 125 YLVNGAGYYV----QGVPI 139 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 10/131 (7%) Query: 116 SASGKYPV--LDMASVPIQIPQKDEIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQG 168 +G V L P + +V G + G+ I A + + + + + Sbjct: 472 DTNGNVQVNQLQQNGFP---AGTLKSVSVSNDGRVVGSYSNGRNIDLAEISIATFNGANF 528 Query: 169 FVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 R + G T+ LE SN + E ++I Q +++ T +I Sbjct: 529 LKRTDGGVFEATNESGEALYGKGGTISGSSLEASNTDIADEFTKLIVTQQAYSANTKVIT 588 Query: 229 ENEKSMLEAIR 239 + + + Sbjct: 589 TANTMVQDLLN 599 >gi|315931307|gb|EFV10276.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni 327] Length = 847 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAI------------KNDIDQKISFVASGKEYL 66 + +N+SN +T GF+ + F + ++ Q V+ Sbjct: 1 MDVEGNNISNVNTTGFKYSRADFGTMFSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTR 60 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRGI--ILTRDGRFKVTDDGSLVSASG 119 GS +T D A+ GD +F + G+ LTR G FK+ G+ V+ +G Sbjct: 61 IHSQGSVQTTDKNTDVAINGDGFFMVSDDGGLTNYLTRSGDFKLDAYGNFVNNAG 115 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPP---TPLEDLSG 191 V +KG I GK +A + + SV + G + E +G Sbjct: 735 IRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTG 794 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 795 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 844 >gi|58039490|ref|YP_191454.1| flagellar hook protein FlgE [Gluconobacter oxydans 621H] gi|58001904|gb|AAW60798.1| Flagellar hook protein FlgE [Gluconobacter oxydans 621H] Length = 411 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 14/135 (10%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA--IKNDIDQKISF 58 + + + ++ A + +++N++N+ T G++ F + V + ND + Sbjct: 4 IINAVHTAVSGLNAQSHAFTDLSNNIANSQTTGYKASTTSFEDYVTNNELANDGESLSDS 63 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG------------IILTRDGRF 106 VA+ + ++ A+ G+ +F + G TR+G F Sbjct: 64 VAATTRQHTDNQCMVTTSTNSTALAISGNGFFNVVQATGQSNDSTPVLGTQQYYTRNGDF 123 Query: 107 KVTDDGSLVSASGKY 121 +G LV+ SG Y Sbjct: 124 SQDKNGYLVNTSGYY 138 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 41/109 (37%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGF-VRRENSGISPNIPPTPLEDLSGV- 192 ++ G + +++A + L + + + + + +P + Sbjct: 299 ISMETDGSVMATFDNGYSQLVAKIPLTTFADPNSLSAQNGQAYTATSQSGSPQINAVNTN 358 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T+ G +E+S + ++ ++I Q + + T ++ ++ + + Sbjct: 359 GAGTLTTGSIEESTTDLTGDLSKLIVAQQAYGANTKVVSTADQLLQTTL 407 >gi|296120817|ref|YP_003628595.1| flagellar basal body rod protein-like protein [Planctomyces limnophilus DSM 3776] gi|296013157|gb|ADG66396.1| Flagellar basal body rod protein-like protein [Planctomyces limnophilus DSM 3776] Length = 521 Score = 95.9 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 73/199 (36%), Gaps = 23/199 (11%) Query: 24 DNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFA 83 NM+ T+G+R V +++ V + + G +I T LD A Sbjct: 304 QNMAQAKTIGYRRRVV-------QLQSHGTPLADQVPTLSTTIDPTPGEWIITERPLDLA 356 Query: 84 LEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASG--KYPVLDMASVPIQIPQKDEIFN 141 ++G WF + + +LTR G ++ L G YP+ PI P+ Sbjct: 357 IQGYGWFVVRHDQQQLLTRVGHLVWNENRQLAIEIGTRSYPL----DPPIVAPEGCTQLL 412 Query: 142 VGEKGEISQKGKV-----IATMGLYSVDMSQGFVRR-----ENSGISPNIPPTPLEDLSG 191 + E G + + + + +V + + + +G S N+ E Sbjct: 413 IEETGNVQAATAGSELSSLGVITMATVPDATQLLEKLPGLFATTGKSGNLTFHTAETARS 472 Query: 192 VTVKRGFLEDSNANSMYEM 210 + G LE SN NS E+ Sbjct: 473 GKLIAGRLEQSNVNSELEL 491 >gi|83944165|ref|ZP_00956621.1| putative flagellar hook protein [Sulfitobacter sp. EE-36] gi|83845032|gb|EAP82913.1| putative flagellar hook protein [Sulfitobacter sp. EE-36] Length = 433 Score = 95.9 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 10/128 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFV 59 + ++ G++ A + + ++++N++N++TVG+R F+ +V + + V Sbjct: 3 ISSALQTGVSGLRANSKAVGSISENIANSNTVGYRRG---FAHMVTTTASGGNGDGVLSV 59 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI------ILTRDGRFKVTDDGS 113 + +E G IST + D A+ G+ +FA+ +LTR G F + G+ Sbjct: 60 NAVEELDIATAGGLISTNSSTDLAIGGNGFFAVSMNPNETVQTNYMLTRAGSFLPDEQGN 119 Query: 114 LVSASGKY 121 L +A+G Y Sbjct: 120 LKNAAGYY 127 Score = 68.1 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 141 NVGEKGE---ISQKG--KVIATMGLYSVDMSQGFVRREN-----SGISPNIPPTPLEDLS 190 + E G + G + + + + V G V + SG + + + Sbjct: 322 EITEDGTLFGVFDNGMRRALYDIPVAVVANPNGLVEVKGNAYRLSGETGSFSALQANSST 381 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + EM +I + F++ +I + M E R Sbjct: 382 VGSINAGALEGSNVDIAQEMTDLIKAQRAFSTNAKVITTVDDMMDETTR 430 >gi|237799210|ref|ZP_04587671.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022065|gb|EGI02122.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. oryzae str. 1_6] Length = 122 Score = 95.9 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 128 SVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRRENSGISP 179 PI +P + + +G G IS Q + + L D+ + + G+ Sbjct: 1 GGPIAVPPQQQ-IEIGSDGTISIRSLGESPQVMAQVDRIKLVKPDLKT--MEKGPDGLIH 57 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P + + V V+ GFL+ SN N++ EM ++ L+++F ++ E+ R Sbjct: 58 TKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAEEDDQSMAR 117 Query: 240 NI 241 + Sbjct: 118 VL 119 >gi|39936993|ref|NP_949269.1| flagellar hook protein flgE [Rhodopseudomonas palustris CGA009] gi|192292821|ref|YP_001993426.1| hypothetical protein Rpal_4455 [Rhodopseudomonas palustris TIE-1] gi|39650850|emb|CAE29373.1| probable flagellar hook protein flgE [Rhodopseudomonas palustris CGA009] gi|192286570|gb|ACF02951.1| protein of unknown function DUF1078 domain protein [Rhodopseudomonas palustris TIE-1] Length = 598 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 12/129 (9%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + +A + L ++ N++N+ T F+ I F +++ N+ Q V +G Sbjct: 6 ALTTSVAGLRSNSYALENISGNIANSQTTAFKRIDTSFLDLIPQAGNN-QQLAGSVTAGS 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDDG 112 + GS S A+ G+ +F ++ P TR G F + +G Sbjct: 65 RLTNTTQGSVQSASVSTYMAINGEGFFVVQKPSSFSDNNPIFPGVDNFTRRGDFSLDKNG 124 Query: 113 SLVSASGKY 121 LV+ +G Y Sbjct: 125 YLVNGAGYY 133 Score = 38.5 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 7/107 (6%) Query: 139 IFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGIS-PNIPPTPLEDLSGV 192 +V G + G+ I A + + + + + R + N PL G Sbjct: 490 SVSVSNDGRVVGAYSNGRNIDLAEVSVATFNGANFLKRTDGGAFEITNESGQPLYGKGGS 549 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SN + E ++I Q +++ T +I + + + Sbjct: 550 VSGSSLE-SSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLN 595 >gi|254255087|ref|ZP_04948404.1| Flagellar hook protein FlgE [Burkholderia dolosa AUO158] gi|124899732|gb|EAY71575.1| Flagellar hook protein FlgE [Burkholderia dolosa AUO158] Length = 419 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 18/179 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SFNI L+ A+ +L ++ N++N T G++ + FS + V G Sbjct: 30 SFNIALSGIKAINGQLGEISQNIANAGTYGYKAGRANFSAFY------LGSTPGGVMVGS 83 Query: 64 EYLSKEV-GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS----- 116 + V GS +STG+ +D AL G+ +F G ++ +R GRF G+++ Sbjct: 84 TSQAMNVAGSLVSTGSGMDAALPGNGFFVTRDANGALVYSRVGRFGTDQHGNVIDYMGRK 143 Query: 117 ASGKYPVLDMASVPIQIPQKD----EIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVR 171 G + IP +V G +S V+ G + D Q + R Sbjct: 144 VQGYAAAGGGQIGDLSIPGGGIPAKASESVAYAGNMSAD-WVVPANGTFDKDDPQSYNR 201 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 42/118 (35%), Gaps = 10/118 (8%) Query: 134 PQKDEIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGI-SPNIPPTPLE 187 P + E G + G+ + + + + + G V +G + L Sbjct: 302 PGTVTGVVLTEDGSLEVQYSNGEKSIAGQLAVATFQNADGLVSVSGTGWHASAAAGEALY 361 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 ++G + G LE SN E+ ++ Q + + + ++ + + ++ + Sbjct: 362 GVAGAGPIDKLVVGALEQSNVELTEELVNLMSAQQNYQANSKVLSTENEMVRTLMQTL 419 >gi|257484945|ref|ZP_05638986.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 126 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 12/127 (9%) Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEIS--------QKGKVIATMGLYSVDMSQGFVRREN 174 V+ PI +P + + +G G IS Q + + L D+ + + Sbjct: 1 VMGNGG-PIAVPPQQQ-IEIGADGTISIRSLGESPQVMAQVDRIKLVKPDLKT--MEKGP 56 Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 G+ P + + V V+ GFL+ SN N++ EM ++ L+++F ++ E+ Sbjct: 57 DGLIHTKTGRPADADATVQVESGFLQASNVNAVEEMTSVLALSRQFELHVKMMKTAEEDD 116 Query: 235 LEAIRNI 241 R + Sbjct: 117 QSMARVL 123 >gi|89068728|ref|ZP_01156114.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] gi|89045691|gb|EAR51753.1| flagellar hook protein FlgE, putative [Oceanicola granulosus HTCC2516] Length = 432 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 10/124 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ A ++ +++N++N +T GFR FS++V + +S V + Sbjct: 6 AMKTGVSGLQANAASVANISENIANANTDGFRRS---FSQMVTTTTTN-PSSMSGVIARD 61 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL-ESPR-----GIILTRDGRFKVTDDGSLVSA 117 GS T + D ALEG +F + + P +LTR G F ++G+L +A Sbjct: 62 RIDMGTPGSMRPTDSATDLALEGGGFFVVSQRPDEPLASNYMLTRAGSFTPDENGNLKNA 121 Query: 118 SGKY 121 +G Y Sbjct: 122 AGFY 125 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DL 189 + G + G+ ++ ++ + +V +G V + + + Sbjct: 320 VEIENDGTVFGFFDNGQRMSLFSLPVANVSNPEGLVAGNGNAYKLSRASGAMTLGIAGGG 379 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ G LE SN + E+ +I + +++ ++ ++ + E R Sbjct: 380 GTASIYAGALEGSNVDIAEELTDLIATQRAYSTNAKVVTTADEMLDETTR 429 >gi|217032455|ref|ZP_03437948.1| hypothetical protein HPB128_175g16 [Helicobacter pylori B128] gi|298736140|ref|YP_003728665.1| flagellar hook protein FlgE [Helicobacter pylori B8] gi|216945863|gb|EEC24483.1| hypothetical protein HPB128_175g16 [Helicobacter pylori B128] gi|298355329|emb|CBI66201.1| flagellar hook protein FlgE [Helicobacter pylori B8] Length = 605 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|330943209|gb|EGH45616.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. pisi str. 1704B] Length = 101 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-GIILTR 102 S + G+ + TG ELD A++GD W A+++P G TR Sbjct: 59 SERPGTDFSAGAMVQTGRELDIAVKGDGWIAVQTPDGGEAYTR 101 >gi|308183061|ref|YP_003927188.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] gi|308065246|gb|ADO07138.1| flagellar hook protein FlgE [Helicobacter pylori PeCan4] Length = 605 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|108563315|ref|YP_627631.1| flagellar hook protein FlgE [Helicobacter pylori HPAG1] gi|107837088|gb|ABF84957.1| flagellar hook protein [Helicobacter pylori HPAG1] Length = 605 Score = 95.5 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|317012717|gb|ADU83325.1| flagellar hook protein FlgE [Helicobacter pylori Lithuania75] Length = 605 Score = 95.1 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|317011118|gb|ADU84865.1| flagellar hook protein FlgE [Helicobacter pylori SouthAfrica7] Length = 605 Score = 95.1 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNVYEMQESTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNAKAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|308184693|ref|YP_003928826.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] gi|308060613|gb|ADO02509.1| flagellar hook protein FlgE [Helicobacter pylori SJM180] Length = 605 Score = 95.1 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|210135099|ref|YP_002301538.1| flagellar hook protein FlgE [Helicobacter pylori P12] gi|210133067|gb|ACJ08058.1| flagellar hook protein [Helicobacter pylori P12] Length = 605 Score = 95.1 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|254779511|ref|YP_003057617.1| flagellar hook protein FlgE [Helicobacter pylori B38] gi|254001423|emb|CAX29418.1| Flagellar hook protein FlgE [Helicobacter pylori B38] Length = 605 Score = 95.1 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|317009564|gb|ADU80144.1| flagellar hook protein FlgE [Helicobacter pylori India7] Length = 605 Score = 95.1 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|332673746|gb|AEE70563.1| flagellar hook [Helicobacter pylori 83] Length = 605 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|109947808|ref|YP_665036.1| flagellar hook protein FlgE [Helicobacter acinonychis str. Sheeba] gi|109715029|emb|CAK00037.1| flagellar hook protein [Helicobacter acinonychis str. Sheeba] Length = 605 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNAKAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|299131804|ref|ZP_07024999.1| fagellar hook-basal body protein [Afipia sp. 1NLS2] gi|298591941|gb|EFI52141.1| fagellar hook-basal body protein [Afipia sp. 1NLS2] Length = 604 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 16/150 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + +A + L ++ N++N+ T F+ I F +++ + S V+S Sbjct: 6 ALTTSVAGLRSQSYALENISGNIANSQTTAFKRIDTSFLDLIPDTGANAQLAGS-VSSSS 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP----------RGI-ILTRDGRFKVTDDG 112 + G + A+ GD +FA++ P G+ TR G F + +G Sbjct: 65 RETNTVQGDVQAASVATYMAINGDGFFAVQKPGSFTDNNPVFDGVDRYTRRGDFTLDKNG 124 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 LV+ +G Y +PI + +V Sbjct: 125 YLVNGAGYYL----EGIPIDPTTGNVTGSV 150 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 5/109 (4%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + ++ G + G+ I A + L + + R + G Sbjct: 495 QTVSISNNGRVVGNYSNGRNIDLAAITLATFNGPNFLKRVDGGAFEVTDESGQALFGKGG 554 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T+ LE SN + E ++I Q +++ T +I + + + + + + Sbjct: 555 TIVGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTSNQMVQDLLNVL 603 >gi|91976146|ref|YP_568805.1| hypothetical protein RPD_1667 [Rhodopseudomonas palustris BisB5] gi|91682602|gb|ABE38904.1| protein of unknown function DUF1078-like [Rhodopseudomonas palustris BisB5] Length = 610 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 13/150 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + +A A L ++ N++N+ T F+ + F +++ + S V S Sbjct: 6 ALTTSVAGLRANSYALENISGNIANSQTTAFKRVDTAFLDLIPQAGTNAQVAGS-VTSES 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDDG 112 + GS S A+ G+ +FA++ P TR G F + +G Sbjct: 65 RLTNTLSGSVQSASVSTYMAINGEGFFAVQKPGSFSDNSPVFTGVNNYTRRGDFSLDKNG 124 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 LV+ +G Y + +A P V Sbjct: 125 YLVNGAGYY-LQGVAIDPTTGNPVGSTPTV 153 Score = 36.2 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 +V +G + G+ I A + + + + + R + G Sbjct: 501 TSVSVSNEGRVVGAYSNGRNIDLAEVSVATFNGANFLKRIDGGAFEVTNESGEALYGKGG 560 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE SN + E ++I Q +++ T +I + + + Sbjct: 561 SISGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLN 607 >gi|15645524|ref|NP_207700.1| flagellar hook protein FlgE [Helicobacter pylori 26695] gi|2314044|gb|AAD07954.1| flagellar hook (flgE) [Helicobacter pylori 26695] Length = 605 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGI-------------- 98 V LS + G ++ + E A +G WF + G Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|317180242|dbj|BAJ58028.1| flagellar hook protein FlgE [Helicobacter pylori F32] Length = 605 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|317014317|gb|ADU81753.1| flagellar hook protein FlgE [Helicobacter pylori Gambia94/24] Length = 605 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|307637597|gb|ADN80047.1| Flagellar hook protein [Helicobacter pylori 908] gi|325996190|gb|ADZ51595.1| Flagellar hook protein [Helicobacter pylori 2018] gi|325997786|gb|ADZ49994.1| Flagellar hook protein [Helicobacter pylori 2017] Length = 605 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|15611911|ref|NP_223562.1| flagellar hook protein FlgE [Helicobacter pylori J99] gi|4155414|gb|AAD06422.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori J99] Length = 605 Score = 95.1 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|317182208|dbj|BAJ59992.1| flagellar hook protein FlgE [Helicobacter pylori F57] Length = 605 Score = 94.7 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGI-------------- 98 V LS + G ++ + E A +G WF + G Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|217034408|ref|ZP_03439822.1| hypothetical protein HP9810_884g13 [Helicobacter pylori 98-10] gi|216943139|gb|EEC22611.1| hypothetical protein HP9810_884g13 [Helicobacter pylori 98-10] Length = 605 Score = 94.7 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGI-------------- 98 V LS + G ++ + E A +G WF + G Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|317177697|dbj|BAJ55486.1| flagellar hook protein FlgE [Helicobacter pylori F16] Length = 605 Score = 94.7 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGI-------------- 98 V LS + G ++ + E A +G WF + G Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|208434813|ref|YP_002266479.1| flagellar hook protein [Helicobacter pylori G27] gi|208432742|gb|ACI27613.1| flagellar hook protein [Helicobacter pylori G27] Length = 605 Score = 94.7 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVTN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|315586853|gb|ADU41234.1| flagellar hook protein [Helicobacter pylori 35A] Length = 605 Score = 94.7 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGI-------------- 98 V LS + G ++ + E A +G WF + G Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|297380105|gb|ADI34992.1| flagellar hook protein FlgE [Helicobacter pylori v225d] gi|308062226|gb|ADO04114.1| flagellar hook protein FlgE [Helicobacter pylori Cuz20] gi|308063738|gb|ADO05625.1| flagellar hook protein FlgE [Helicobacter pylori Sat464] gi|317178740|dbj|BAJ56528.1| flagellar hook protein FlgE [Helicobacter pylori F30] Length = 605 Score = 94.7 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGI-------------- 98 V LS + G ++ + E A +G WF + G Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|32265682|ref|NP_859714.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] gi|32261730|gb|AAP76780.1| flagellar hook protein FlgE [Helicobacter hepaticus ATCC 51449] Length = 745 Score = 94.7 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 22/143 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK------NDIDQ 54 M + + + L ++++N++N +T+G+R +F + + I+ Sbjct: 1 MNGTLVNSYSGIKTHQFGLDSISNNIANVNTIGYRENIPQFETLFANNMDFLNADSPINN 60 Query: 55 KISFVAS-GKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGI 98 +++ A+ +S GS+ +T E + A EG WF + E + Sbjct: 61 DMNYGATKSSNAISTRSGSYKATDGEFNVAYEGKGWFIVGEQKSGSFEIKDDGYEKKQKN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKY 121 TRDG F +G +V+ SG Y Sbjct: 121 YFTRDGSFLRDGEGYIVNTSGYY 143 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 20/122 (16%) Query: 138 EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + + G I G + + +G+ + QG + + G + I Sbjct: 621 RDVRIDKDGIIFLAFDNGAYEPMGRIGIAAFVNDQGLRKVGGNLFEMTEMVVNGNANTIS 680 Query: 183 PTPLEDLSGVTVKRG-----FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P+ G+ +K G LE SN + + ++I + + ++ + + EA Sbjct: 681 GRPILGWEGLNLKYGSVLYKHLETSNVDVGNALTELIVMQRGYSMNARAFTTGDDLIKEA 740 Query: 238 IR 239 + Sbjct: 741 LN 742 >gi|316932790|ref|YP_004107772.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] gi|315600504|gb|ADU43039.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] Length = 616 Score = 94.7 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 16/139 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + +A A L ++ N++N+ T F+ I F +++ N+ Q V + Sbjct: 6 ALTTSVAGLRANSYALENISGNIANSQTTAFKRIDTSFLDLIPQTGNN-QQLAGSVNAES 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDDG 112 + GS S A+ G+ +F ++ P TR G F + +G Sbjct: 65 RLTNTLTGSVQSAAVSTYMAINGEGFFVVQKPASFTDNNPIFAGVNNYTRRGDFSLDKNG 124 Query: 113 SLVSASGKYPVLDMASVPI 131 LV+ +G Y VPI Sbjct: 125 YLVNGAGYYL----QGVPI 139 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 5/106 (4%) Query: 139 IFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 +V +G + G+ I A + + + + + R + G + Sbjct: 508 SVSVSNQGRVVGSYSNGRNIDLAEVSVATFNGANFLKRIDGGAFETTNESGEALFGKGGS 567 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE SN + E ++I Q +++ T +I + + + Sbjct: 568 ISGASLESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLN 613 >gi|261838284|gb|ACX98050.1| flagellar hook protein [Helicobacter pylori 51] Length = 605 Score = 94.7 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGI-------------- 98 V LS + G ++ + E A +G WF + G Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|86750926|ref|YP_487422.1| hypothetical protein RPB_3817 [Rhodopseudomonas palustris HaA2] gi|86573954|gb|ABD08511.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 598 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 13/150 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + +A A L ++ N++N+ T F+ + F +++ + Q V + Sbjct: 6 ALTTSVAGLRANSYALENISGNIANSQTTAFKRVDTSFLDLIPQAGTN-QQLAGSVTAES 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-----------LTRDGRFKVTDDG 112 + GS S A+ G+ +FA++ P TR G F + +G Sbjct: 65 RLTNTLSGSVQSASVSTYMAINGEGFFAVQKPGSFSDNSPVFTGVNNYTRRGDFSLDKNG 124 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 LV+ +G Y + +A P V Sbjct: 125 YLVNGAGYY-LQGVAIDPTTGNPVGSTPTV 153 Score = 35.8 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 +V +G + G+ I A + + + + + R + G Sbjct: 489 TSVSVSNEGRVVGSYSNGRNIDLAEVSVATFNGANFLKRIDGGAFEVTNESGEALYGKGG 548 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ LE SN + E ++I Q +++ T +I + + + Sbjct: 549 SISGSSLESSNTDIADEFTKLIVTQQAYSANTKVITTANTMVQDLLN 595 >gi|188527733|ref|YP_001910420.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] gi|188143973|gb|ACD48390.1| flagellar hook protein FlgE [Helicobacter pylori Shi470] Length = 605 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGI-------------- 98 V LS + G ++ + E A +G WF + G Sbjct: 61 DRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKNGFSKKQDN 120 Query: 99 ILTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|209884509|ref|YP_002288366.1| flagellar basal body FlaE domain protein [Oligotropha carboxidovorans OM5] gi|209872705|gb|ACI92501.1| flagellar basal body FlaE domain protein [Oligotropha carboxidovorans OM5] Length = 602 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 16/150 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + +A + L ++ N++N+ T F+ I F +++ ++ S V S Sbjct: 6 ALTTSVAGLRSQSYALENISGNIANSQTTAFKRIDTSFLDLIPDTGSNSQLAGS-VRSSS 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESP----------RGI-ILTRDGRFKVTDDG 112 + G + A+ GD +FA++ P G+ TR G F + +G Sbjct: 65 RETNTVQGDVQAAAVSTYMAINGDGFFAVQKPGSFTDNNPVFDGVDRYTRRGDFTLDKNG 124 Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEIFNV 142 LV+ +G Y +PI + +V Sbjct: 125 YLVNGAGYYL----EGIPIDPTTGNVTGSV 150 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 5/109 (4%) Query: 138 EIFNVGEKGEI---SQKGKVI--ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 + ++ G + G+ I A + L + + R + G Sbjct: 493 QTVSISNNGRVVGNYSNGRNIDLAAITLATFNGPNFLKRVDGGAFEVTDESGQALFGKGG 552 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 T+ LE SN + E ++I Q +++ T +I + + + + + + Sbjct: 553 TIVGSSLEGSNTDIADEFTKLIVTQQAYSANTKVITTSNQMVQDLLNVL 601 >gi|207092210|ref|ZP_03239997.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_AG0C1] Length = 605 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 22/144 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS--- 57 M + + + + ++++N++N +T+G+R+ +F + + + ++ K Sbjct: 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVAN 60 Query: 58 ----FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP-RGII------------- 99 V LS + G ++ + E A +G WF + G + Sbjct: 61 DRNYGVTGSGNTLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDN 120 Query: 100 -LTRDGRFKVTDDGSLVSASGKYP 122 LTR G F DG LV+ G Y Sbjct: 121 FLTRAGNFARDADGYLVTPEGYYV 144 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 21/122 (17%) Query: 138 EIFNVGEKGEIS---QKGKV--IATMGLYSVDMSQGFVRRENS----------GISPNIP 182 + E G IS G V +A +G+ + QG + + G + + Sbjct: 480 RDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLS 539 Query: 183 PTPLED------LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 P+ L ++ +LE SN N+ + +I + + ++ + + E Sbjct: 540 GNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKE 599 Query: 237 AI 238 AI Sbjct: 600 AI 601 >gi|289804815|ref|ZP_06535444.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 134 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 18/131 (13%) Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRR 172 +PV+ PI +P+ E + G IS + + L + ++ V+R Sbjct: 1 HPVIGEGG-PITVPEGSE-ITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNE--VQR 56 Query: 173 ENSGISPNIPPTPLE------DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 + G+ E + + G LE SN + M MI ++F + Sbjct: 57 SDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKV 116 Query: 227 IDENEKSMLEA 237 I +++ A Sbjct: 117 ITSVDENEGRA 127 >gi|255323568|ref|ZP_05364698.1| flagellar hook protein [Campylobacter showae RM3277] gi|255299282|gb|EET78569.1| flagellar hook protein [Campylobacter showae RM3277] Length = 543 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 16/169 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK-----NDIDQK 55 M S G++ + A+N++N + VGF +F + N + Sbjct: 1 MVRSLYNGVSGVRTQGFSMDVWANNIANINNVGFTASIPEFKSIFYQTSFAAGNNPTQDQ 60 Query: 56 ISFVASG--KEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 + A+G + G F+ T LD A+ G +F + + G TR G F V + Sbjct: 61 VGLGATGMTTALSFYKQGPFMKTDNVLDMAIGGKGFFGVTNGSGTYYTRAGSFGVDKERY 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 LV+ G Y VL + Q+ +G I G+V + Sbjct: 121 LVTNQGNY-VLGTQNTLTQVTP--------SQGAIEAFGRVNGRAAVTQ 160 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 43/179 (24%) Query: 103 DGRFKVTDDGSLVSA-------SGKYPVLDMASV--------PIQIPQKDEIFNVGEKG- 146 +G +G LV++ +G LD + + + + ++ + G Sbjct: 361 NGELNFDHEGRLVNSTLSALDNNGSQVELDFGTPVAAGQIYSGVTSTSQAKSISIAQDGV 420 Query: 147 -----------------EISQKGKV--IATMGLYSVDMSQGFVRRE--------NSGISP 179 G+V + + LY QG + NSG + Sbjct: 421 REGILKDYYTNDSGNILAQFTNGQVRSVGKVALYHFQNEQGLAKMGDNIYSQSANSGAAF 480 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + + G + LE SN + + ++I + +++ I + + + AI Sbjct: 481 FYKDAGGKSIYGAKLASSMLEQSNVDLAQALTEVIVTQKAYDANAKSITTSNEMLQRAI 539 >gi|170744543|ref|YP_001773198.1| flagellar hook protein FlgE [Methylobacterium sp. 4-46] gi|168198817|gb|ACA20764.1| protein of unknown function DUF1078 domain protein [Methylobacterium sp. 4-46] Length = 407 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + G++ A R+STVA+N+ N T G++ + +FS ++ + D V + + Sbjct: 6 ALRTGMSGMNAQSNRISTVAENVQNAGTTGYKRVSTEFSSLLLSSSATGDYNSGSVETVQ 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIIL-TRDGRFKVT-DDGSLVSASG 119 + G+ +ST ++ D A+ G+ +F ++ G TR G F G+ +A+G Sbjct: 66 RRAVSDEGARVSTSSKSDLAIAGNGFFVVKDASGASYLTRAGNFVPDGSTGTFKNAAG 123 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 10/107 (9%) Query: 143 GEKGEISQ---KGKVIA--TMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGV 192 G + +A + + VD R + + L+ Sbjct: 298 AADGTVYAVYEDNSKVAAFKIPIADVDSPDNLKPRAGNVYETTLESGALQVGFANQGGRG 357 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E+ MI + + + + + + + ++ Sbjct: 358 GIVSGALEQSNVDVSTELTSMIASQTVYTANSKVFMTSNEMLDTLMQ 404 >gi|254440385|ref|ZP_05053879.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198255831|gb|EDY80145.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 432 Score = 93.2 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 41/237 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + +SFN +A + RL+T++DN++N+ T G++ + F +V V Sbjct: 3 ISSSFNASVAGLASNASRLATISDNIANSSTYGYKRVVADFHSMVVDGGKGKYTA-GGVG 61 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFAL----------ESPRGIILTRDGRFKVTD 110 + L E G ++T D A+ G + ES + L G F+ Sbjct: 62 VTTQRLIDERGPLVATSNATDLAVRGRGMLPVTERSSVSVGSESDFSLRLATTGSFRTDA 121 Query: 111 DGSLV------------SASGKYPVLD----MASVPIQI--------PQKDEIFNVGEKG 146 +G L +A G P L PI+I P + V Sbjct: 122 EGYLTTTNGLLLLGWPSNADGSLPNLPRDTIGGLEPIRIDTNQFISDPTTNVELAVNLPA 181 Query: 147 EISQKGKVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 ++ G T L + G +PN+P T + + F+EDS Sbjct: 182 TATEAGASGDTEELLVEYIDNLGIAETLTVSFAPNVPATGATNEWTM-----FVEDS 233 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 23/182 (12%) Query: 81 DFALEGDAWFALESPRGIILTRDGRFKVTDD-GSL------VSASGKYPVLDMASVPIQI 133 D A G ++ + G T DG VT D G++ + G L P+ I Sbjct: 248 DLAGLGGRLLSVNNTTGGAYTADGTVSVTTDSGTIEIDIGNIGEPGGLTQLSDNFAPVSI 307 Query: 134 PQKDE------IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 + V G + +++ + L V G + +N S Sbjct: 308 IKNGSPVGTMTSVEVDANGFVRALFDNGVSRIMYQVPLVDVSNPNGLISEDNQSYSVTPE 367 Query: 183 PTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 D + E+S + E+ +I + ++S +I ++ + E Sbjct: 368 SGQFFLWDAGDGPTGDIVSFAREESATDVAAELTNLIKTQRAYSSNAKVIQTVDEMLQET 427 Query: 238 IR 239 Sbjct: 428 TN 429 >gi|288960286|ref|YP_003450626.1| flagellar hook protein [Azospirillum sp. B510] gi|288912594|dbj|BAI74082.1| flagellar hook protein [Azospirillum sp. B510] Length = 871 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 21/148 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + A + L ++DN++N+ T+G++ + F +V + + V + Sbjct: 6 SMTTAVLGLNAQSKALGHISDNIANSSTIGYKRVDSAFETMVLQSSQRLHEP-GGVTAQP 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFA-------------LESPRG------IILTRDG 104 +++ GS + + A++G +F+ +++ G + TR G Sbjct: 65 VFMNSIQGSLTQVQSPTNIAIQGQGFFSVSKVNVQNSTSTLVQTQTGAVNSSSVYYTRAG 124 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQ 132 F++ LV++SG Y + P+ Sbjct: 125 DFELDKSRYLVNSSG-YALNGWLVDPVT 151 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPLEDLSGVTVKRGFLEDSNANS 206 K+IA + + + + R + P + +G V +E SN + Sbjct: 777 KMIARVPIITFNNPNALQRESGGVFLESEDAGKPNFNDPETNGAGAVVA-NSVESSNVDI 835 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E +MI + +++ ++ +++ + E + Sbjct: 836 ADEFTKMIVTQRSYSANAKIVTTSDEMLQEVL 867 >gi|91791414|ref|YP_561065.1| flagellar basal body rod protein-like protein [Shewanella denitrificans OS217] gi|91713416|gb|ABE53342.1| Flagellar basal body rod protein-like protein [Shewanella denitrificans OS217] Length = 215 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 87/234 (37%), Gaps = 31/234 (13%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 Q L+T ++N++N +T G+ + F++V+ A Q S S Sbjct: 9 GINTQLQSLATTSNNVANANTPGYLR-QTSFTQVLDAQIQTQTQVSSKQLS--------- 58 Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 G+ TG DFA+ G + F +E + LT+DGRF + + G LV SG + Sbjct: 59 GAIKQTGNVYDFAVLGKSLFVVELLGELRLTQDGRFHLNEAGDLVHISGAMAMTSEG--- 115 Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 P ++ ++ A + S S ++ G+ + Sbjct: 116 ---PLAAN----------TETDQIAARLWTVSTSESYTNLQPAEMGLYLANWDDWKTNDD 162 Query: 191 GVTVKR--GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + + E N+ ++ +M+ + + S+ + ++ I + Sbjct: 163 SKVLAQALNYTEH---NATADVLEMMRIQRSVESLQKAYQTYDAAIGYGISELG 213 >gi|313610153|gb|EFR85462.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL F2-208] Length = 238 Score = 92.4 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 22/229 (9%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDIDQKISFVASGKEYLSKEVGSF 73 ++N++N T GF+ ++ SEV+ G + + V +++ GS Sbjct: 1 SNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVTRQVGTIDYGVRPAATHINLTAGSS 59 Query: 74 ISTGTELDFALE------GDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 T + DF ++ G +F I L+R G+F G L +A G +L Sbjct: 60 YITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQFHSDQFGFLRTADGA-NLLSAT 118 Query: 128 SVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYSVDMSQGFVRRENSGISPNIPP 183 IQ+ QK G++ + + + +G S + + V+ + N Sbjct: 119 GEAIQVGQK-TSIRAEANGDLYNAETSQYLGRLGTKFVSANQADSLVKDGEGRLHVNGIN 177 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 T ++ G +E SN + EM Q++ + + +++ +K Sbjct: 178 TMNLPAGQGIIQNGVIETSNVDLGVEMVQLMDNQRMVQASKNVVNMFDK 226 >gi|323165588|gb|EFZ51375.1| flagellar basal-body rod protein flgG [Shigella sonnei 53G] Length = 125 Score = 92.4 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 13/123 (10%) Query: 129 VPIQIPQKDEIFNVGEKGEISQKGK------VIATMGLYSVDMSQGF------VRRENSG 176 I IP +G G +S + + + L + G + E Sbjct: 3 PAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQS 62 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 TP + +G+ + +G++E SN N E+ MI + + + + + ++ + + Sbjct: 63 SGVPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQK 121 Query: 237 AIR 239 + Sbjct: 122 LTQ 124 >gi|144901061|emb|CAM77925.1| probable: Flagellar hook protein FlgE, gene: FLGE OR GSU0419 [Magnetospirillum gryphiswaldense MSR-1] Length = 605 Score = 92.0 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 31/202 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ-----KISF 58 + N A +A + +++ N+SN +T G++ + F V+ K I Sbjct: 79 AMNNASTAMMATSWDMGSISQNISNVNTTGYKRKETLFKTVMSESKAGPSTHSGKLNIFG 138 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWF----------------------ALESPR 96 V + Y ++ G+ + D A+ G + +++ P Sbjct: 139 VKTADRYHIEQQGTITGSNWNTDLAINGRGFLLVAPPSTTTSGTTVSSNAPTSASVDDPA 198 Query: 97 GIILTRDGRFKV----TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG 152 ++ TRDG F + +A G Y + MA I Q + V E + +G Sbjct: 199 SVLYTRDGSFHFVAGPNQEKYFTTAGGNYVLGWMADDTGTIDQTGALTPVYTLPETTMEG 258 Query: 153 KVIATMGLYSVDMSQGFVRREN 174 + +++ + N Sbjct: 259 RETTEASVFANIPRDATLSASN 280 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 LE SN + E +MI + + + T+ ++ M R++ + Sbjct: 562 LEASNVDIGQEFTKMIVTQKAYTTNATVFKTADE-MTTVARDLKA 605 >gi|330943210|gb|EGH45617.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. pisi str. 1704B] Length = 133 Score = 92.0 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 14/126 (11%) Query: 129 VPIQIPQKDEIFNVGEKGEISQK-------GKVIATMGLYSVDMSQGFVRRENSGISPNI 181 I +PQ + F VG+ G +S ++I + G + Sbjct: 9 PAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFINPAGLQAMGGNLYLETG 68 Query: 182 P------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 TP + G T+ + LE+SN +++ E+ MI + + + +I ++ + Sbjct: 69 SSGAPQIGTPGLNGLGPTL-QNTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLQ 127 Query: 236 EAIRNI 241 +N+ Sbjct: 128 NLTQNL 133 >gi|126653431|ref|ZP_01725527.1| flagellar hook-basal body protein [Bacillus sp. B14905] gi|126589787|gb|EAZ83920.1| flagellar hook-basal body protein [Bacillus sp. B14905] Length = 125 Score = 91.6 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 18/125 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--------- 51 M + L+ +L T+++N++N++T GF+ + F+E++ N+ Sbjct: 1 MLRTMITATNTMGQLQNKLDTISNNIANSNTTGFKAKEASFNELLYQQFNNDKLDRAERQ 60 Query: 52 ---IDQKISFVASGKEYLSKEVGSFISTGTELDFAL-EGDAWFALESPRG-----IILTR 102 + S G+ +++ GS +T +LD A +F + P G + TR Sbjct: 61 TPVGIRYGSGAMLGQIKSNQKQGSLQTTNRDLDLAFTTAKQYFNILMPNGENGTETVYTR 120 Query: 103 DGRFK 107 G F Sbjct: 121 QGDFY 125 >gi|326402284|ref|YP_004282365.1| flagellar hook protein FlgE [Acidiphilium multivorum AIU301] gi|325049145|dbj|BAJ79483.1| flagellar hook protein FlgE [Acidiphilium multivorum AIU301] Length = 425 Score = 91.6 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 27/174 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++ A + ++DN++N+ T+G++ + F+ + + S VA Sbjct: 6 ALDTSVSGLQAQSSAFTNISDNIANSQTIGYKGVNTHFTNYLVQSTASNNGPDSVVA-NP 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR---------------GIILTRDGRFKV 108 EY + G+ + L A+ G+ +F + P TR G F + Sbjct: 65 EYTNTVEGTITQSSNPLSLAINGNGYFNVSLPGPTTTTAGKTTQTFDAQQYYTRAGDFTL 124 Query: 109 TDDGSLVSASGKY-----------PVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 G LV+ +G Y V + PIQ+ Q +S Sbjct: 125 NSSGYLVNGAGAYLDGWSVNPTTGTVNTSSLAPIQVSQGASPPVPTSNVTLSAT 178 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR----ENSGISPNIPPTPLED 188 ++ +G I+ K IA + L S + E + + Sbjct: 312 SNLSIDTQGNITANYTNGFSKQIAQIPLASFASPDALQNKSGQIETATQASGAATINAVG 371 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG + G +E+SN + + +I+ Q + + T ++ ++ + + Sbjct: 372 GSGGALVTGSVENSNVDIATQFTDLINAQQAYTANTKVVTAAQQILTTTVN 422 >gi|148259130|ref|YP_001233257.1| flagellar hook protein FlgE [Acidiphilium cryptum JF-5] gi|146400811|gb|ABQ29338.1| flagellar basal body FlaE domain protein [Acidiphilium cryptum JF-5] Length = 425 Score = 91.6 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 27/174 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++ A + ++DN++N+ T+G++ + F+ + + S VA Sbjct: 6 ALDTSVSGLQAQSSAFTNISDNIANSQTIGYKGVNTHFTNYLVQSTASNNGPDSVVA-NP 64 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPR---------------GIILTRDGRFKV 108 EY + G+ + L A+ G+ +F + P TR G F + Sbjct: 65 EYTNTVEGTITQSSNPLSLAINGNGYFNVSLPGPTTTTAGKTTQTFDAQQYYTRAGDFTL 124 Query: 109 TDDGSLVSASGKY-----------PVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 G LV+ +G Y V + PIQ+ Q +S Sbjct: 125 NSSGYLVNGAGAYLDGWSVNPTTGTVNTSSLAPIQVSQGASPPVPTSNVTLSAT 178 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 9/111 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR----ENSGISPNIPPTPLED 188 ++ +G I+ K IA + L S + E + + Sbjct: 312 SNLSIDTQGNITANYTNGFSKQIAQIPLASFASPDALQNKSGQIETATQASGAATINAVG 371 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SG + G +E+SN + + +I+ Q + + T ++ ++ + + Sbjct: 372 GSGGALVTGSVENSNVDIATQFTDLINAQQAYTANTKVVTAAQQILTTTVN 422 >gi|296283217|ref|ZP_06861215.1| flagellar hook protein FlgE [Citromicrobium bathyomarinum JL354] Length = 412 Score = 91.6 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 4/107 (3%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 ++TVADN++N +TVG++ + F +V + VA+ + + G + + Sbjct: 1 MATVADNITNINTVGYKGAEADFRTLVTDGRLKSSYSAGGVAAAPRAMISKQGLLQAASS 60 Query: 79 ELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASGKY 121 + D ++G +F + GI TR G F+ + G L + G + Sbjct: 61 QTDLGIDGGGFFVTRTGSGADSGIAFTRAGAFRPDEQGYLRNTGGYF 107 Score = 68.9 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 12/109 (11%) Query: 139 IFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIP------PTPLE 187 V + G +S + + + + + G R + + + P E Sbjct: 299 SVEVSKDGIVSAVFDDGTSRPVFQLPMATFANPDGLSRLPGNAYTVSQQSGNVAIGRPGE 358 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 SG T+ G LE SN + E MI + +++ + +I + + E Sbjct: 359 LGSG-TISAGTLEASNVDLAQEFTNMIRFQRAYSASSKIITTVDDMLQE 406 >gi|255605341|ref|XP_002538377.1| Flagellar L-ring protein precursor, putative [Ricinus communis] gi|223512459|gb|EEF24006.1| Flagellar L-ring protein precursor, putative [Ricinus communis] Length = 334 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 11/102 (10%) Query: 131 IQIPQKDEIFNVGEKGEISQ------KGKVIATMGLYSVDMSQGFVRRENSGI-SPNIPP 183 + IP+ VG G +S I + + S G ++ + Sbjct: 4 VTIPEGAISVTVGSDGTVSAQMPNQTDLTQIGQIQVASFPNPAGLQAVGDNYLIETPASG 63 Query: 184 TPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFN 221 T +G+ T+++G LE SN N + E+ MI + + Sbjct: 64 TVALGNAGIDGRGTIRQGMLEGSNVNVVEELVDMIETQRAYE 105 >gi|114765247|ref|ZP_01444379.1| putative flagellar hook protein [Pelagibaca bermudensis HTCC2601] gi|114542382|gb|EAU45410.1| putative flagellar hook protein [Roseovarius sp. HTCC2601] Length = 433 Score = 90.1 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 10/128 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-GAIKNDIDQKISFV 59 + + G++ +A + + ++ N++N DTVG+R FS++V + + V Sbjct: 3 ISNAMASGVSGLMANSKAVEKISYNIANADTVGYRRS---FSQMVTSGSTSASGSFSTGV 59 Query: 60 ASGKEYLSKEVGSFISTGTELDFALEGDAWFALESP------RGIILTRDGRFKVTDDGS 113 A+ + + GSF+ T + + G +F + S G + TR G F+ +DG+ Sbjct: 60 ATEVTHSNTAEGSFMDTSVNSNLTITGSGFFVVNSNIDASYTAGNMFTRVGSFEPDEDGN 119 Query: 114 LVSASGKY 121 LV+A+G Y Sbjct: 120 LVNAAGLY 127 Score = 61.6 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 7/88 (7%) Query: 158 MGLYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 + L + G NS + P +G T+ G +E +N + E+ Sbjct: 344 IPLATFANPNGLETSNNSTFHTSNTSGSYYLGQPGTGETG-TMTSGGVESANVDIAEELT 402 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAIR 239 +I + ++S +I ++ + E + Sbjct: 403 SLIQRQRAYSSNAKIITTADEMLNETVN 430 >gi|329849962|ref|ZP_08264808.1| flagellar hook protein flgE [Asticcacaulis biprosthecum C19] gi|328841873|gb|EGF91443.1| flagellar hook protein flgE [Asticcacaulis biprosthecum C19] Length = 474 Score = 90.1 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + + G+ A A LST+++N++N +T G++ + F+ +V + V Sbjct: 3 INRAMQSGVTALAANASALSTISNNIANANTTGYKRVTTNFTNLVSGTSGTATYASNGVT 62 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWF-------ALESPRGIILTRDGRFKVTDDGS 113 + + G + + ++G +F A+ ++ TRDG F G Sbjct: 63 AAVQQNMTARGELNAASSGYSLGIDGQGFFVTSDTSDAINQGSTMLFTRDGSFNTDTSGY 122 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFN 141 L +A+G Y A + Sbjct: 123 LRNAAGLYLQGWQADSSGTVNPSSTDIT 150 Score = 62.0 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPL 186 + + G ++ + +A + L + + G + + + P Sbjct: 360 TKVEIDKDGIVTAIYNNGNTRTLAQVALATFINANGLTPISGNAFTVSSQSGGFTLREPG 419 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E +G + LE S + E +I + +++ + +I +++ + E + Sbjct: 420 EGGAG-NLAPAALEASTVDLAQEFTGLITTQRAYSAASKIITTSDEMLQELL 470 >gi|83646774|ref|YP_435209.1| flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] gi|83634817|gb|ABC30784.1| Flagellar hook protein FlgE [Hahella chejuensis KCTC 2396] Length = 660 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 1/99 (1%) Query: 31 TVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 T GF+ V F E+ + V + G +TG D A++G +F Sbjct: 32 TPGFKGRDVFFQEL-NPYSDGQGSHYDGVKVNGSGIRFSAGDLTTTGNNTDLAIDGAGFF 90 Query: 91 ALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 L + TR G+F++ +DG LV + V + Sbjct: 91 ILRGEGENLYTRAGQFRLDNDGYLVDQNSNRRVAALTGG 129 Score = 43.9 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 9/113 (7%) Query: 138 EIFNVGEKGEI---SQKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 F+ E G I G+ + + + S S + Sbjct: 545 TEFSFQEDGVIAFKYSNGQEKTGPQVAMANFLNVNALTSEGGSLFSAGEDAGITVGAANS 604 Query: 193 ----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 VK +E SN E ++I + + + + + +++ + + + ++ Sbjct: 605 GGFGKVKGESIELSNVELSREFAEIIIIQRGYQASSQVMNVSNEMIENLYNSV 657 >gi|226327742|ref|ZP_03803260.1| hypothetical protein PROPEN_01615 [Proteus penneri ATCC 35198] gi|225203446|gb|EEG85800.1| hypothetical protein PROPEN_01615 [Proteus penneri ATCC 35198] Length = 111 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 11/109 (10%) Query: 142 VGEKGEISQK------GKVIATMGLYSVDMSQGFVR-RENSGISPNIPPTPLEDLSGVT- 193 +G G +S + + + + L + G EN + P E+ G+ Sbjct: 2 IGRDGTVSVEIEGSPAPQQVGQLTLTTFINDSGLESVGENLYLETASSGAPTENAPGING 61 Query: 194 ---VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G++E SN N E+ MI + + + I +++ + + + Sbjct: 62 AGLLYQGYVETSNVNVAEELVNMIQTQRAYEINSKAISTSDQMLQKLTQ 110 >gi|316936123|ref|YP_004111105.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] gi|315603837|gb|ADU46372.1| flagellar hook-basal body protein [Rhodopseudomonas palustris DX-1] Length = 422 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + + ++A A Q L+ ++DN++N+ TVG++T FS++V A V Sbjct: 6 ALSSAISALNAQSQSLAMISDNIANSQTVGYKTTSASFSQLVTAASGASTYSSGGVTVLA 65 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWF---ALESPRGIILTRDGRFKVTDDGSLVSASGK 120 G +T + D + G+ +F + + TR G F + + G LV+ASG Sbjct: 66 RSNITTQGLLTTTTSSTDIGISGNGFFPVTTAVTGGTTLYTRGGSFTLDNSGYLVNASGA 125 Query: 121 YPVL 124 Y + Sbjct: 126 YLLG 129 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 10/114 (8%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSG 191 +G+ G +S K I + + + + ++N + T + LSG Sbjct: 308 SSIAIGDDGTVSATYSNGKTTTIYKVPVATFAAADQLEAKDNGMYAATLASGTAVVQLSG 367 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ G LE S +++ E MI Q +++ + +I + I I Sbjct: 368 TNGAGSIEGGVLEASTSDTNTEFSSMISAQQAYSAASQVISAVNEMYDTLISAI 421 >gi|313639076|gb|EFS04057.1| flagellar basal body rod protein FlgG [Listeria seeligeri FSL S4-171] Length = 239 Score = 89.7 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 22/229 (9%) Query: 23 ADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK---------EYLSKEVGSF 73 ++N++N T GF+ ++ SEV+ K + + G +++ GS Sbjct: 2 SNNVANAQTPGFKFDQLT-SEVISKNKVNYQNNLVAKKVGTIDYGVRPAATHINLTAGSS 60 Query: 74 ISTGTELDFALE------GDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 T + DF ++ G +F I L+R G+F G L +A G +L Sbjct: 61 YITNRDRDFFMQDANPEQGSNFFLTAKNGEISLSRGGQFHSDQFGFLRTADGA-NLLSAT 119 Query: 128 SVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMG--LYSVDMSQGFVRRENSGISPNIPP 183 +Q+ K G++ + + +G S D + + N Sbjct: 120 GEAVQVGVK-TSIRAEANGDLYNAETNAYLGRLGTRFVSADQVDNLAKDGEGRLHVNGTN 178 Query: 184 TPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 T ++ G LE SN + EM Q++ + + +++ +K Sbjct: 179 TMNLPAGQGIIQNGVLETSNVDLGVEMVQLMDNQRMVQASKNIVNMFDK 227 >gi|213025696|ref|ZP_03340143.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 93 Score = 89.3 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 13/92 (14%) Query: 14 ALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS---------FVASGKE 64 A + + +A+N++N T GF+ + F +++ + S + +G Sbjct: 1 AQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTLPSGLQIGTGVR 60 Query: 65 YLSKE----VGSFISTGTELDFALEGDAWFAL 92 ++ E G+ T D A++G +F + Sbjct: 61 PVATERLHSQGNLSQTNNSKDVAIKGQGFFQV 92 >gi|158604896|gb|ABW74721.1| flagellar hook protein [Campylobacter concisus 13826] Length = 533 Score = 88.2 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 7/151 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F G++ + ++N+SN + VGF+ +F ++ + Sbjct: 1 MMRGFYNGVSGIKTQSFGMDVWSNNISNINNVGFKASIPEFKNLINQNLVSAGSGPTSDQ 60 Query: 61 SG------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 G L GSF ST D A+ GD +F + G TR G F + G+ Sbjct: 61 VGLGATKQTTALDMSNGSFQSTDNNFDLAIGGDGFFGVVDKTGKNYYTRTGTFDIDAAGN 120 Query: 114 LVSASGKYPVLDMASVPIQIPQKDEIFNVGE 144 LV G + +A+ P + G+ Sbjct: 121 LVDTRGNLLLGTLANFTPTTPSATALKKYGQ 151 Score = 59.7 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 13/115 (11%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-------- 184 ++V ++G I +A + LY QG + ++ Sbjct: 416 SKYSVDDRGNIMANFDNTRAFPVAKVALYHFINDQGVAKVGDNLYEATANSGEPFFYKNK 475 Query: 185 PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E + G + LE SN + + ++I + + + I +++ + AI+ Sbjct: 476 AGETVYGAQILANKLEMSNVDLGQALSEVIVTQKAYEASAKSITTSDEMIQTAIQ 530 >gi|162147445|ref|YP_001601906.1| flagellar hook protein flgE [Gluconacetobacter diazotrophicus PAl 5] gi|209545555|ref|YP_002277784.1| hypothetical protein Gdia_3444 [Gluconacetobacter diazotrophicus PAl 5] gi|161786022|emb|CAP55604.1| putative flagellar hook protein flgE [Gluconacetobacter diazotrophicus PAl 5] gi|209533232|gb|ACI53169.1| protein of unknown function DUF1078 domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 569 Score = 87.8 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 15/134 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + + ++ A + +++N++N+ TVG++ F + V S Sbjct: 5 NALSTAVSGIDAQSTAFTNLSNNIANSQTVGYKAESTSFQDFVAGSLTSSTASSDISDSV 64 Query: 63 KEYLSKEVGSFISTGTELD---FALEGDAWFALESPRGII------------LTRDGRFK 107 + VG+ + D A+ G+ F + G TR+G F Sbjct: 65 AAVDVQNVGAQGTASASTDTLAMAINGNGLFDVSEETGQATSGTTQFENTQYYTRNGEFY 124 Query: 108 VTDDGSLVSASGKY 121 ++G LV+ +G Y Sbjct: 125 ENNEGYLVNTTGYY 138 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 36/108 (33%), Gaps = 10/108 (9%) Query: 141 NVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS----- 190 + G + ++I + L + G + + + Sbjct: 457 EIESDGSVMAEFSNGDTQLIGKVALSTFANVDGLNAVTGQAYTATAASGAAQTGTVGSNG 516 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T++ G++E S + ++ +I + +++ T ++ + + I Sbjct: 517 TGTLEVGYVESSTTDLTSDLSALIVDQEAYSANTKVVTTADDLLQATI 564 >gi|83593766|ref|YP_427518.1| hypothetical protein Rru_A2431 [Rhodospirillum rubrum ATCC 11170] gi|83576680|gb|ABC23231.1| Protein of unknown function DUF1078 [Rhodospirillum rubrum ATCC 11170] Length = 442 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 21/188 (11%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F A + L ++ N++N +T G++ + F ++ + D V Sbjct: 6 AFTNSSMAMITQSHALGQISTNVANINTTGYKQVDTNFKTLLSESTANFD--FFGVKPVD 63 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFAL----ESPRGIILTRDGRF-----------KV 108 E G ++TG LD A+ G F + + TRDG F V Sbjct: 64 YRRVSEQGGLLTTGRNLDVAIGGQGLFMVNQQADLSGETFYTRDGSFGARVAKETVGKVV 123 Query: 109 TDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGE--KGEISQKGKVIATMGLYSVDMS 166 + L + G Y V+ A+ + E F V + G I+ + ++ + L + + Sbjct: 124 AGNSYLSTQDGYY-VMGWAADQAAVQAGTEPFPVNDTKTGTIT-GARALSPIQLNTRAEA 181 Query: 167 QGFVRREN 174 G Sbjct: 182 DGQATTAA 189 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 13/113 (11%) Query: 141 NVGEKGEIS---QKGKVIATMGLYSVDM---------SQGFVRRENSGISPNIPPTPLED 188 N+ G +S G+ + L D + R ++ I Sbjct: 329 NIDASGVLSGTYSNGQTLPLYKLALTDFQANDHLEAIGKNLYRASDAAGESRIFSADSAA 388 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G TV G LE S + + +MI ++S T+ ++ M + + + Sbjct: 389 SVGTTVTSGALEQSTVDLGDQFSKMITTQTAYSSSATVFRTCDE-MSQTVSGL 440 >gi|531462|gb|AAA67880.1| orfG [Bacillus subtilis subsp. subtilis str. 168] Length = 135 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 16/126 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S L+Q++ T++ N+SN++T G++ FSE+V + +D+K VA Sbjct: 1 MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVA 60 Query: 61 SGK---------------EYLSKEVGSFISTGTELDFALEGD-AWFALESPRGIILTRDG 104 + L + GS T +LD A + + TRDG Sbjct: 61 KARKTPPGLRLGVGAMMSSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDG 120 Query: 105 RFKVTD 110 VT Sbjct: 121 ALYVTP 126 >gi|170022971|ref|YP_001719476.1| flagellar basal body rod protein [Yersinia pseudotuberculosis YPIII] gi|169749505|gb|ACA67023.1| flagellar basal body rod protein [Yersinia pseudotuberculosis YPIII] Length = 102 Score = 87.0 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF+I A A ++L+T+++N++N+ T GF+ + +FS + Q + SG Sbjct: 2 SFSIANTALNAHTEQLNTISNNIANSATKGFKASRTEFSSMYAQ-----SQPLGVAVSGV 56 Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRG 97 + G TG LD A+ G +F + G Sbjct: 57 SQNISKDGQKEKTGMGLDLAISGGGFFVVRESSG 90 >gi|218681813|ref|ZP_03529560.1| flagellar hook protein FlgE [Rhizobium etli CIAT 894] Length = 400 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 16/158 (10%) Query: 34 FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE 93 ++ + FS +V + + V + + G T + D A+ GD +F ++ Sbjct: 1 YKAVSTSFSSLVLP-SSGGNYNSGGVQTSVRQAVSDQGDISYTTSATDLAISGDGFFIVQ 59 Query: 94 SPRGI-ILTRDGRFKVTDDGSLVSASGKYPVL---DMASVPIQIPQKDEIFNVGEKGEIS 149 P G +LTR G F+ D+G+LV+A+G + D S + + D + + Sbjct: 60 GPDGTPVLTRAGDFQKDDEGNLVNAAGFGLMGYSYDAGSPAVVVNGFDGLVPIN------ 113 Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 + GL ++ + G + + P P Sbjct: 114 -----VNQEGLTAIASTSGVFKGNLDSGANIAPVAPAT 146 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 12/126 (9%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRE 173 + Q + + G + K K + + L +V G V Sbjct: 273 GTGTPNGQAASPVKDVTIDGDGIVYAKYEDGTNKPLYRIPLANVASPDKLTLMSGNVYSA 332 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + P + G T+K G LE SN + E+ +MI + + + + + Sbjct: 333 NGQSGVTVTGFPQTNGLG-TIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDI 391 Query: 234 MLEAIR 239 M + Sbjct: 392 MDVLVN 397 >gi|255028363|ref|ZP_05300314.1| flagellar basal body rod protein FlgG [Listeria monocytogenes LO28] Length = 217 Score = 85.1 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 21/213 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVTRQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALESPRGIILTRDGRF 106 V +++ GS T + DF + +G +F I L+R G+F Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITAKNGEISLSRGGQF 119 Query: 107 KVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVIATMGLYSVD 164 G L +A G +L IQ+ QK G++ + + + +G V Sbjct: 120 HSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEANGDLYNAETSQYLGRLGTKFVS 177 Query: 165 MSQGF-VRRENSGISPNIPPTPLEDLSGVTVKR 196 +Q + ++ G + +G + + Sbjct: 178 ANQADSLVKDGEGRLHINGVNTMNLPAGQGIIQ 210 >gi|84502376|ref|ZP_01000512.1| flagellar hook protein FlgE, putative [Oceanicola batsensis HTCC2597] gi|84389188|gb|EAQ01985.1| flagellar hook protein FlgE, putative [Oceanicola batsensis HTCC2597] Length = 422 Score = 84.7 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 12/118 (10%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVASGKEYLSKEV 70 +A + ++ ++ N++N+DT GFR F++++ GA S V + + + + Sbjct: 1 MANSKAVARISYNIANSDTYGFRRS---FAQMLTSGATIPTGTVSASGVRAEVVHQNTQD 57 Query: 71 GSFISTGTELDFALEGDAWFALESPRGI-------ILTRDGRFKVTDDGSLVSASGKY 121 G+ ++TG + A+ G+ +FA+ +TR G F+ +G L +ASG Y Sbjct: 58 GTPLTTGAATNLAISGNGFFAVTRNINEGTGEPEHFMTRAGDFQPDSEGYLRNASGMY 115 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 10/109 (9%) Query: 141 NVGEKGEIS---QKG--KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLS 190 + G + G + + + L +V G + +N+ + + Sbjct: 311 EISNDGVVYGIFDNGMRRALYQIPLATVPNPNGLMTADNATFLVSEASGSFTLSMAGSGT 370 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G +E SN + E+ ++I + F+S +I ++ + E +R Sbjct: 371 AGEITGGSVESSNVDIAEELTELIQKQRAFSSNAKIITTADEMLDETVR 419 >gi|206896319|ref|YP_002246665.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM 5265] gi|206738936|gb|ACI18014.1| flagellar hook protein FlgE [Coprothermobacter proteolyticus DSM 5265] Length = 221 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 30/243 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + I A L+ A N+SN +T F+ ++ A + + + + Sbjct: 1 MVELYGIARAGMRLSVGYLNVAAFNISNVNTEAFKALEPV-ESSGNAHEFPVANGRANIV 59 Query: 61 SGK---EYLSKEVGSFISTGTELDFALEG-DAWFALESPRGIILTRDGRFKVTDDGSLVS 116 +G +T +AL A+F + LTR G F++ DG+ VS Sbjct: 60 DNAYLFTVNRDNMGPLSNTSG---YALTNPQAYFVITDGTNRWLTRKGNFELDRDGN-VS 115 Query: 117 ASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSG 176 G Y + G + K + + L V+ R++ G Sbjct: 116 LQGFYVM-------------------NRDGAV-AKATDLYSGNLLLVEADTSQYDRDSIG 155 Query: 177 ISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLE 236 + ++ + LE SN + EM ++I + + ++ + Sbjct: 156 FVSTGQER-IINVDEAGLTANALEMSNVDLSAEMVKLIAAQRAYQFSAKAFRNADELIEA 214 Query: 237 AIR 239 +I Sbjct: 215 SIN 217 >gi|163735543|ref|ZP_02142975.1| flagellar hook protein FlgE, putative [Roseobacter litoralis Och 149] gi|161391163|gb|EDQ15500.1| flagellar hook protein FlgE, putative [Roseobacter litoralis Och 149] Length = 416 Score = 83.9 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 14/126 (11%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGT 78 +++++DN++N+ T G++ ++ F +V V + + L E G+ +ST Sbjct: 1 MASISDNIANSSTFGYKRVQTDFESMV-LSSGGGSYAAGGVRANTQRLIDERGTLVSTSN 59 Query: 79 ELDFALEGDAWF------ALESPRG---IILTRDGRFKVTDDGSLVSASG----KYPVLD 125 D A+ G +++ + LT G F+ +G L S SG +P Sbjct: 60 STDLAVRGGGMLPVAQSAQVQTAGADAPMFLTTTGSFRTDAEGYLTSQSGLVLMGWPAAA 119 Query: 126 MASVPI 131 S+P+ Sbjct: 120 DGSIPV 125 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 16/127 (12%) Query: 129 VPIQIPQKDEIF------NVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGI 177 PI + + +V G + + + + I + L +V G ++ Sbjct: 287 APISVTKDGSAIGNFVGVDVDPNGFVRASFDTGEIRTIYQIPLINVPNPNGLQAFDSQTY 346 Query: 178 SPNIPPTP-----LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 P+ D + E+S + E+ MI + ++S +I ++ Sbjct: 347 LPSRQSGAFFLWNAGDGPTGDIVSFAREESTTDVAGELTDMIKTQRAYSSNAKVIQTVDE 406 Query: 233 SMLEAIR 239 + E Sbjct: 407 MLQETTN 413 >gi|313650471|gb|EFS14878.1| flagellar basal-body rod protein flgF [Shigella flexneri 2a str. 2457T] gi|323165586|gb|EFZ51373.1| flagellar basal-body rod protein flgF [Shigella sonnei 53G] gi|332759653|gb|EGJ89958.1| flagellar basal-body rod protein flgF [Shigella flexneri 2747-71] gi|332761423|gb|EGJ91707.1| flagellar basal-body rod protein flgF [Shigella flexneri K-671] gi|333004887|gb|EGK24407.1| flagellar basal-body rod protein flgF [Shigella flexneri VA-6] gi|333005400|gb|EGK24918.1| flagellar basal-body rod protein flgF [Shigella flexneri K-218] gi|333019423|gb|EGK38706.1| flagellar basal-body rod protein flgF [Shigella flexneri K-304] Length = 132 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 17/123 (13%) Query: 129 VPIQIPQKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGISPN 180 PI +P+ E + G IS + + L S+ V+R + GI Sbjct: 6 GPIAVPEGAE-ITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQRGDDGIFRL 62 Query: 181 IPPTPL------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 T + + V G LE SN N++ M MI ++F +I + + Sbjct: 63 SAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNA 122 Query: 235 LEA 237 A Sbjct: 123 GRA 125 >gi|288958564|ref|YP_003448905.1| flagellar hook protein [Azospirillum sp. B510] gi|288910872|dbj|BAI72361.1| flagellar hook protein [Azospirillum sp. B510] Length = 881 Score = 83.2 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 20/133 (15%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 + L +A + L ++DN++N T G++ + F +V + + V + + Sbjct: 8 SSALMGLVAQSKALGNISDNIANASTAGYKRVDTTFQSMVLQ-SSPRNHAPGGVTARPSF 66 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGI-------------------ILTRDGRF 106 ++ G+ S + A++G +F++ + TR G F Sbjct: 67 MNDVQGNLTSVSSNTSAAIQGQGFFSVSRLDAQTAGTIGGATGGGATGSGPNVYTRLGDF 126 Query: 107 KVTDDGSLVSASG 119 +++ LV++SG Sbjct: 127 QLSRTRHLVNSSG 139 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 + GE G + ++IA + + + + R E+ G P Sbjct: 767 KEVVFGENGAVMVNYDNGRSRMIAKVPIVTFNNPNALQRESGGVFVESEGAGKPNLNDPK 826 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + +G V +E SN + E +MI + +++ ++ +++ + E + Sbjct: 827 LNGAGAMVA-NSVEASNVDIASEFTKMIVTQRGYSANAKVLTASDEMLQEVL 877 >gi|289679023|ref|ZP_06499913.1| flagellar basal body rod protein FlgF [Pseudomonas syringae pv. syringae FF5] Length = 92 Score = 82.8 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A+N++N T GF + + + ++ ++ Sbjct: 1 MDKLLYVAMSGASENAIAQKAHANNLANVSTNGFMRDLEQARSM--PVFGEVMPSRAYAM 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALES 94 S + G+ + TG ELD A++GD W A+++ Sbjct: 59 SERPGTDFSAGAMVQTGRELDIAVKGDGWIAVQT 92 >gi|309788146|ref|ZP_07682752.1| flagellar basal-body rod flgG domain protein [Shigella dysenteriae 1617] gi|308923998|gb|EFP69499.1| flagellar basal-body rod flgG domain protein [Shigella dysenteriae 1617] Length = 82 Score = 81.6 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 61 SGKEYLSKEVG 71 + L G Sbjct: 61 TLPSGLQIGTG 71 >gi|46202330|ref|ZP_00053401.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 205 Score = 81.6 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 28/138 (20%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKIS------- 57 +++ + +++ N++N +T G++ F V+ + +N ++ + Sbjct: 1 MQSMDWAMGSISQNIANVNTTGYKEKDTLFKTVLSESHTAPASTQNSPNKNTATTGLDIF 60 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR-----------GIILTRDGRF 106 V + L + G+ S+ T D A+ G +F + P G + TR G F Sbjct: 61 GVRAVDRNLITKSGTITSSTTWSDMAINGRGFFIVTQPDSTGAPGAGGTSGTLYTRAGDF 120 Query: 107 K---VTDDGSLVSASGKY 121 V + +A G Y Sbjct: 121 TQRAVNGNNYFTTADGNY 138 >gi|289609890|emb|CBI60366.1| unnamed protein product [Sordaria macrospora] Length = 90 Score = 81.2 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 19 LSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK--EYLSKEVGSFIST 76 +++++ N++N T GF+ + +F++V+ + ++ + G+ + + Sbjct: 1 MASISHNLANVGTTGFKKSRAEFADVIASNLAVAPTQMVGSGTVVKGNRQQFGEGNLVQS 60 Query: 77 GTELDFALEGDAWFALE---SPRGIILTRD 103 + LD A+ GD +FAL+ + +G+ TR+ Sbjct: 61 SSSLDIAIAGDGFFALKPDPNKQGLAFTRN 90 >gi|218133669|ref|ZP_03462473.1| hypothetical protein BACPEC_01538 [Bacteroides pectinophilus ATCC 43243] gi|217991044|gb|EEC57050.1| hypothetical protein BACPEC_01538 [Bacteroides pectinophilus ATCC 43243] Length = 420 Score = 81.2 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 17/118 (14%) Query: 19 LSTVADNMSNTDTVGFRT----------IKVKFSEVVGAIKNDIDQKISFVASGKEYLS- 67 + + +N++N +T+ F++ + + A Q + G S Sbjct: 1 MDVIGNNIANVNTIAFKSSSVSFSEVFYQTTQVASGPNATTGKGGQNAKQIGLGTSVGSI 60 Query: 68 ----KEVGSFISTGTELDFALEGDA--WFALESPRGIILTRDGRFKVTDDGSLVSASG 119 G+ T D L G +F + S TR G F G+LV+ SG Sbjct: 61 STKVDTEGASQRTDNPFDVKLSGSGNSFFIVRSNGNTYFTRAGDFTYDASGALVTQSG 118 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 11/113 (9%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL--- 189 + + G I VI + S + G + + + + + + Sbjct: 305 SSVGIQDDGRIIASYSNGDTVVIGQIATQSFTNAAGLEKVGTNMYAATLNSGEFDGVGED 364 Query: 190 ---SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G ++ G +E SN + E MI + F + + +I ++ + E I Sbjct: 365 ITSAGGSMVSGTIEMSNVDLASEFTDMITTQRGFQANSRIITVSDTMLEELIN 417 >gi|323174793|gb|EFZ60408.1| flagellar basal-body rod protein flgG domain protein [Escherichia coli LT-68] Length = 79 Score = 80.5 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 61 SGKEYLSKEVG 71 + L G Sbjct: 61 TLPSGLQIGTG 71 >gi|289804814|ref|ZP_06535443.1| flagellar basal body rod protein FlgG [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 65 Score = 78.9 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +S I A + + +A+N++N T GF+ + F +++ + S Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60 Query: 61 S 61 + Sbjct: 61 T 61 >gi|332088747|gb|EGI93859.1| flagellar basal-body rod protein flgF [Shigella boydii 5216-82] Length = 123 Score = 78.5 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 16/117 (13%) Query: 135 QKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 + + G IS + + L S+ V+R + GI T Sbjct: 2 PEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQRGDDGIFRLSAETQA 59 Query: 187 ------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + + V G LE SN N++ M MI ++F +I + + A Sbjct: 60 TREPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRA 116 >gi|330889080|gb|EGH21741.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. mori str. 301020] Length = 100 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 7/98 (7%) Query: 150 QKGKVIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSN 203 ++I + G + E TP + G T+ + LE+SN Sbjct: 4 ATPQIIGNIQTADFINPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTL-QNTLENSN 62 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ E+ MI + + + +I ++ + +N+ Sbjct: 63 VSTVEELVNMITTQRAYEMNSKVISTADQMLQNLTQNL 100 >gi|320179222|gb|EFW54180.1| Flagellar basal-body rod protein FlgG [Shigella boydii ATCC 9905] Length = 54 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID 53 M +S I A + + +A+N++N T GF+ + F +++ Sbjct: 1 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPG 53 >gi|332758237|gb|EGJ88560.1| flagellar basal-body rod protein flgF [Shigella flexneri 4343-70] gi|332767685|gb|EGJ97878.1| hypothetical protein SF293071_1339 [Shigella flexneri 2930-71] gi|333008280|gb|EGK27754.1| flagellar basal-body rod protein flgF [Shigella flexneri K-272] gi|333019770|gb|EGK39042.1| flagellar basal-body rod protein flgF [Shigella flexneri K-227] Length = 123 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 16/117 (13%) Query: 135 QKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL 186 + + G IS + + L S+ V+R + GI T Sbjct: 2 PEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQRGDDGIFRLSAETQA 59 Query: 187 ------EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + + V G LE SN N++ M MI ++F +I + + A Sbjct: 60 TRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRA 116 >gi|83310488|ref|YP_420752.1| flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] gi|82945329|dbj|BAE50193.1| Flagellar hook protein FlgE [Magnetospirillum magneticum AMB-1] Length = 545 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 29/147 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK-------- 55 +F A ++ + +++ N++N +T G++ + F V+ Sbjct: 5 AFTNASQAMQTMDWAMGSISQNIANVNTTGYKEKETLFKTVLSETHTSPPTSQNSPTKNT 64 Query: 56 ------ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR------------G 97 I V + + + G+ ++ T D A+ G +F + P Sbjct: 65 ATTGLDIFGVRAVDRTMVSKSGTITASTTWSDMAINGRGFFIVTPPDSTGAPQTTLSSSN 124 Query: 98 IILTRDGRFK---VTDDGSLVSASGKY 121 + TR G F V + +A G + Sbjct: 125 TLYTRAGDFTQRAVNGNNYFTTADGNF 151 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/115 (11%), Positives = 37/115 (32%), Gaps = 12/115 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL------ 186 + + G + + + I + + S + + Sbjct: 430 DKVEISTDGSVMAHYDNGESRRIFQIPVASFVAPDQLDAISGTLFRATEQAGDMTVASIS 489 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 + SG ++ E SN + +MI + ++ + + ++ M + IR++ Sbjct: 490 DQGSGASIVASATESSNVALEDQFTRMIVTQKAYSVNSNVFKTADE-MTQTIRDL 543 >gi|309788145|ref|ZP_07682751.1| flagellar basal-body rod protein flgF [Shigella dysenteriae 1617] gi|308923997|gb|EFP69498.1| flagellar basal-body rod protein flgF [Shigella dysenteriae 1617] Length = 123 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 16/117 (13%) Query: 135 QKDEIFNVGEKGEISQKG--------KVIATMGLYSVDMSQGFVRRENSGISP------N 180 + + G IS + + L S+ V+R + GI Sbjct: 2 PEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSE--VQRGDDGIFRLSAESQA 59 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 L+ + V G LE SN N++ M MI ++F +I + + A Sbjct: 60 TRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRA 116 >gi|332092842|gb|EGI97910.1| flagellar basal-body rod protein flgF [Shigella dysenteriae 155-74] Length = 123 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 12/115 (10%) Query: 135 QKDEIFNVGEKGEISQKG-----KVIATMG-LYSVDMSQGFVRRENSGISPNIPPTPL-- 186 + + G IS +A +G L V + V+R + GI T Sbjct: 2 PEGAEITIAADGTISALNPGDPANTVAPVGCLKLVKATGSEVQRGDDGIFRLSAETQATR 61 Query: 187 ----EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 + + V G LE SN N++ M MI ++F +I + + A Sbjct: 62 GPVLQADPTLRVMSGGLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRA 116 >gi|73532548|dbj|BAE19832.1| flagellar hook protein [Edwardsiella tarda] Length = 76 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 A +L + +N++N+ TVGF++ V F+++ K + ++ V + G Sbjct: 1 MNAASSQLDVIGNNIANSQTVGFKSGSVTFADMFAGSKVGLGVTVASVNQ-----DFKDG 55 Query: 72 SFISTGTELDFALEGDAWFAL 92 + +T LD A+ G +F + Sbjct: 56 TTTTTNRGLDVAISGQGFFRM 76 >gi|207110308|ref|ZP_03244470.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPKX_438_CA4C1] Length = 114 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 19/120 (15%) Query: 94 SPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ-- 150 P G TR G FK+ + G+LV++ G + I +P+ N+G G +S Sbjct: 1 MPDGTTAYTRSGNFKLDEQGNLVTSEGYLLI-----PQITLPEDTTQVNIGVDGTVSVTQ 55 Query: 151 ----KGKVIATMGLYSVDMSQGFVRRENSGI------SPNIPPTPLEDLSGVTVKRGFLE 200 VI + L + G ++ I P G +++GFLE Sbjct: 56 GLQTTSNVIGQITLANFVNPAGLHSMGDNLFSITNASGDAIVGNPDSQGLG-KLRQGFLE 114 >gi|256043052|ref|ZP_05445997.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1 str. Rev.1] Length = 70 Score = 75.8 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 40/65 (61%) Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P+ P P+ D + V V +G +E SN ++M EM ++I +++ F + L+ + E ++ EAI Sbjct: 3 PSKPAQPVVDDNSVGVVQGMIEGSNVDAMTEMTRLISISRAFEQVNNLLSQQEATVSEAI 62 Query: 239 RNIAS 243 + + S Sbjct: 63 KTLGS 67 >gi|218290052|ref|ZP_03494219.1| flagellar basal body rod protein [Alicyclobacillus acidocaldarius LAA1] gi|218239886|gb|EED07074.1| flagellar basal body rod protein [Alicyclobacillus acidocaldarius LAA1] Length = 403 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 56/172 (32%), Gaps = 26/172 (15%) Query: 97 GIILTRDGRFKVTDDGSLVSASGKYPV-LDMASVPI--------------QIPQKDEIFN 141 G+ +TRDG ++ D +V A+G LD A I QI + Sbjct: 227 GLAVTRDGALQLNADNVVVDAAGHAIAPLDAAGRVIVGGRIVVNPLYHGTQIFSQSGTPV 286 Query: 142 VGEKGEIS-----QKGKVI--ATMGLYSVD----MSQGFVRRENSGISPNIPPTPLEDLS 190 G+ S +G + +GL D G G PL S Sbjct: 287 YDANGQPSFRVYDAQGNPVAGGRIGLVDADVAGLQPLGEGEYMVGGSYQAAAVEPLLRAS 346 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + G LE SN N M QM+ + + + + + A +I Sbjct: 347 TGRMVFGALESSNVNVAATMAQMMQALNAYEANQRVAQSVDSMLNVAATDIG 398 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 18/148 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI-----------KVKFSEVVGAIK 49 M + A ++ +++N++N +T GF+ ++S G+ Sbjct: 1 MIQGLTAAASGMAAEDRLEQLLSNNLANQETPGFKASIGELIEDPVFAMERYSYGDGSDG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL-----EGDAWFALESPRGIILTRDG 104 I + V + S G +TG LD A+ G+ +AL +P+G G Sbjct: 61 IGIGEMGGGVDFQEGVPSFSEGGLETTGRPLDLAIVDTISSGEVAYAL-TPQGAK-PAAG 118 Query: 105 RFKVTDDGSLVSASGKYPVLDMASVPIQ 132 V G L + V P+Q Sbjct: 119 PVTVGAGGRLTAGGMPLAVYGPDGQPVQ 146 >gi|226327744|ref|ZP_03803262.1| hypothetical protein PROPEN_01617 [Proteus penneri ATCC 35198] gi|225203448|gb|EEG85802.1| hypothetical protein PROPEN_01617 [Proteus penneri ATCC 35198] Length = 98 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 155 IATMG-LYSVDMSQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSM 207 + +G L V Q + R + G+ P L V V G LE SN N Sbjct: 2 LGQIGRLKMVKPEQNDLVRGDDGLFHLSPNGVARAGAELPADDSVKVLAGVLEGSNVNPA 61 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 M MI ++F +I + + A Sbjct: 62 EAMVDMIANARRFEMQMKVIHSADDNAQRA 91 >gi|254699461|ref|ZP_05161289.1| flagellar basal body rod protein FlgG [Brucella suis bv. 5 str. 513] gi|261749912|ref|ZP_05993621.1| predicted protein [Brucella suis bv. 5 str. 513] gi|261739665|gb|EEY27591.1| predicted protein [Brucella suis bv. 5 str. 513] Length = 77 Score = 75.5 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 26/52 (50%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID 53 + I A + L +A+N++N +T GF+ + +F++++ + D Sbjct: 1 MKALTIAATGMNAQQLNLEVIANNIANINTTGFKRARAEFTDLLYQSERTAD 52 >gi|218660672|ref|ZP_03516602.1| flagellar hook protein FlgE [Rhizobium etli IE4771] Length = 374 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 34/170 (20%) Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIP----------------------QKDEIF 140 G +G L + V + I + + Sbjct: 203 TGTLNFDANGKLTTGGAVNIVDPVTGQTIAMDFSGFTQLGADFSGTGTPNGQAATPVKDV 262 Query: 141 NVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRENSGISPNIPPTPLEDL 189 + G + K K + + L +V G V N + P + Sbjct: 263 TIDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSANGQSGVTVTGFPQTNG 322 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G T+K G LE SN + E+ +MI + + + + + M + Sbjct: 323 LG-TIKSGALEGSNVDLAGELTEMIESQRSYTANSKVFQTGSDIMDVLVN 371 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 15/134 (11%) Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVS 116 V + + G T + D A+ GD +F ++ G +LTR G F+ D+G+LV+ Sbjct: 1 GVQTSVRQAVSDQGDISYTTSTTDLAISGDGFFIVQGADGTPVLTRAGDFQKDDEGNLVN 60 Query: 117 ASGKYPVL---DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRE 173 A+G + D + + + D + V + GL ++ + G + Sbjct: 61 AAGFQLMGYSYDSGAPAVVVNGFDGLVPVN-----------VNQDGLTAIASTSGVFKGN 109 Query: 174 NSGISPNIPPTPLE 187 + P P Sbjct: 110 LDSNAKVAPVAPAT 123 >gi|258512707|ref|YP_003186141.1| flagellar basal body rod protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479433|gb|ACV59752.1| flagellar basal body rod protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 403 Score = 74.7 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 26/172 (15%) Query: 97 GIILTRDGRFKVTDDGSLVSASGKY--PVLDMA----SVPIQIPQ---------KDEIFN 141 G+ +TRDG ++ + +V A+G P+ I + + Sbjct: 227 GLAVTRDGALQLNAENVVVDAAGHAIAPLDAAGRVMVGGRIVVNPLYHGTQIFSQSGTPV 286 Query: 142 VGEKGEIS-----QKGKVI--ATMGLYSVDMSQGFVRREN----SGISPNIPPTPLEDLS 190 G+ S +G+ + +GL D++Q E G PL S Sbjct: 287 YDANGQPSFRVYDAQGQPVAGGRIGLVDADVTQLQPLGEGEYMVGGSYQAAAVEPLLRAS 346 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + G LE SN N M QM+ + + + + + A +I Sbjct: 347 TGRMVFGALESSNVNVAATMAQMMQALNAYEANQRVAQSVDSMLNVAATDIG 398 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 45/205 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI-----------KVKFSEVVGAIK 49 M + A ++ +++N++N +T GF+ ++S G+ Sbjct: 1 MIQGLTAAASGMAAEDRLEQLLSNNLANQETPGFKASIGELIEDPVFAMERYSYGDGSDG 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVT 109 I + V + S G +TG LD A+ + S + Sbjct: 61 IGIGEMGGGVDFQEGVPSFSEGGLETTGRPLDLAIVD-----VLSSGEVAYA-------- 107 Query: 110 DDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGF 169 ++ G PV + VG G ++ G +A GL + F Sbjct: 108 -----LTPQGAKPV-------------AGLVTVGAGGRLTAGGMPLAVYGLDGQPVQGLF 149 Query: 170 VRRENSGISPNI---PPTPLEDLSG 191 R S + P D +G Sbjct: 150 AVRNPSYQGSELLSEGGAPAYDAAG 174 >gi|312879594|ref|ZP_07739394.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] gi|310782885|gb|EFQ23283.1| fagellar hook-basal body protein [Aminomonas paucivorans DSM 12260] Length = 554 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Query: 138 EIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPP------TPL 186 E + V G +S K + + + L QG V+ ++ S + TP+ Sbjct: 440 EDYAVSADGTVSGVYSNGKNQPLYQVALALFANPQGLVKEGDTVFSESANSGMAQVMTPM 499 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E +G + LE +N + E +I + F + +I +++ + E I Sbjct: 500 EGGAG-KIMGSNLEMANVDLSQEFVNLIVAQRGFQANARVITTSDQVLEELIN 551 >gi|330809244|ref|YP_004353706.1| flagellar hook protein FlgE [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377352|gb|AEA68702.1| putative flagellar hook protein FlgE [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 392 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 18/194 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +F G++ + + L V++N+SN +T G+R + V G I+ Sbjct: 1 MLQAFFNGMSGLFSFAKGLDNVSNNVSNMNTPGYRGSDTFYRAVNGQDGQSFGSGIAGTQ 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGII-LTRDGRFKVTDDGSLVSASG 119 + + G TG + A+ G +F L +G + TR G+F+V DG LV Sbjct: 61 -----VRIKPGENRQTGNNTNVAINGAGYFVLRDEQGALSYTRAGQFEVDKDGYLVDTIS 115 Query: 120 KYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP 179 + + I + ++ +G+ + + + + R + + Sbjct: 116 QQRIAG-------IDSAGNLRDINIQGQRTLPPQATTRVEMVG-----ALARTGTTEATH 163 Query: 180 NIPPTPLEDLSGVT 193 I + D +G + Sbjct: 164 QINAIQVFDSTGAS 177 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 4/87 (4%) Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSG----VTVKRGFLEDSNANSMYEMGQ 212 + L + NS +G ++ G+LE SN + E G Sbjct: 301 QLALADFADESALIAGANSLYHTPSSMKAEFGRAGEKQFGRIQGGYLELSNVDLAQEFGD 360 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ + + + + + ++ + + + + Sbjct: 361 ILIIQRGYQASSRVMTVSNEMLEQLYN 387 >gi|333008282|gb|EGK27756.1| flagellar basal-body rod protein flgG domain protein [Shigella flexneri K-272] gi|333019772|gb|EGK39044.1| flagellar basal-body rod protein flgG domain protein [Shigella flexneri K-227] Length = 82 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Query: 159 GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 GL S+ + + E TP + +G+ + +G++E SN N E+ MI + + Sbjct: 5 GLESIGEN---LYTETQSSGAPNESTPGLNGAGL-LYQGYVETSNVNVAEELVNMIQVQR 60 Query: 219 KFNSITTLIDENEKSMLEAIR 239 + + + ++ + + + Sbjct: 61 AYEINSKAVSTTDQMLQKLTQ 81 >gi|289670508|ref|ZP_06491583.1| flagellar basal body rod protein FlgF [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 90 Score = 73.2 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 + A Q STV+ N++N DTVGF+ +E +I + + + + Sbjct: 1 MTGARASLQAQSTVSHNLANVDTVGFKAALAN-TEAFKIQGKGYPSRIDALHVDQGF-DR 58 Query: 69 EVGSFISTGTELDFALEGDAWFALESPRGI 98 G TG LD +L+ D W A++SP G Sbjct: 59 SQGHQKVTGNPLDVSLQQDRWLAVQSPDGS 88 >gi|309788144|ref|ZP_07682750.1| flagellar basal-body rod protein flgF [Shigella dysenteriae 1617] gi|308923996|gb|EFP69497.1| flagellar basal-body rod protein flgF [Shigella dysenteriae 1617] Length = 111 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 2/89 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGPSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAW 89 + G T LD AL+ D W Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGW 87 >gi|196018952|ref|XP_002118898.1| hypothetical protein TRIADDRAFT_62888 [Trichoplax adhaerens] gi|190577813|gb|EDV18617.1| hypothetical protein TRIADDRAFT_62888 [Trichoplax adhaerens] Length = 140 Score = 72.4 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%) Query: 25 NMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFAL 84 N+SN +T G++ F + + + + V +G + G T E D+A+ Sbjct: 26 NLSNANTPGYKG----FGTYLLSETSKYN---GGVNAGSRINANIQGEISETKKEFDYAI 78 Query: 85 EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDM 126 EGD +F LE I TR GR+++ + + S +G Y + + Sbjct: 79 EGDGFFPLECGEQIKFTRAGRYELDNQDFIKSPNGCYLLGEA 120 >gi|323706570|ref|ZP_08118123.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534077|gb|EGB23875.1| protein of unknown function DUF1078 domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 59 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 V++GFLE SN + EM MI + + + I + ML N+ Sbjct: 10 NVRQGFLETSNVQVVNEMVNMIAAQRAYELNSKAIQAADD-MLSIANNL 57 >gi|167467491|ref|ZP_02332195.1| flagellar hook protein FlgE [Yersinia pestis FV-1] Length = 314 Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV- 192 F + G + +Q+ +++ + + + +G ++ P +G Sbjct: 203 FQINSDGSVVGTYSNQQTQLLGQIVMVNFSNPEGLSSEGDNVWKETQSSGNPTLGTAGSG 262 Query: 193 ---TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 T+ G LE SN + E+ MI + + S I ++ + + Sbjct: 263 GFGTLTSGALESSNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILQTLV 311 >gi|154174960|ref|YP_001407311.1| hypothetical protein CCV52592_2049 [Campylobacter curvus 525.92] gi|153793155|gb|EAU00899.2| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 533 Score = 71.6 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 7/116 (6%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 F G++ + ++N++N + GF+ +F ++ + Sbjct: 1 MRGFYNGVSGIKTQSFGMDVWSNNIANINNAGFKASIPEFKNLINQSAVSAGNYPTTDQV 60 Query: 62 G------KEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTD 110 G L G F +T D A+ G +F + G I TR G F + Sbjct: 61 GLGAVKQTTALKMSNGGFQTTDKNFDLAIGGKGFFGVTDANGKIYYTRTGSFNIDA 116 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 39/176 (22%) Query: 103 DGRFKVTDDGSLVSAS----GKYPVLDMASVPIQI-------PQKDEIFNVGEKG----- 146 G G LVS + G + + + K++ FN+ G Sbjct: 354 SGALTFDSSGRLVSNTLASVGNVALNFGGNGDANVYNGMTSAANKNKNFNITRDGYAEGL 413 Query: 147 ----EISQKGKV-----------IATMGLYSVDMSQGFVRRENSGISPNIPPT------- 184 + G V +A + LY QG + ++ Sbjct: 414 LSKYSMDDSGNVIANFDNTRTFPVAKVALYHFQNEQGVSKVGDNLYEATPNSGEAFFYKN 473 Query: 185 -PLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + G + LE SN + + ++I + + +++ I +++ + AI+ Sbjct: 474 KAGQTIYGANIIANKLEMSNVDLGQALTEVIVIQKAYDASAKSITTSDEMIQTAIK 529 >gi|315301942|ref|ZP_07872943.1| flagellar hook protein FlgE [Listeria ivanovii FSL F6-596] gi|313629684|gb|EFR97816.1| flagellar hook protein FlgE [Listeria ivanovii FSL F6-596] Length = 342 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 17/111 (15%) Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASG 119 G GS STG D AL+G +F G I+ TRDG F V+D+ L + G Sbjct: 4 GAILTDYTAGSPTSTGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNYLTTQQG 63 Query: 120 KYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 KY VL PIQIP I GE ++ G + + L Sbjct: 64 KYVMGYATDKNGNVLSGNLQPIQIPLNSAIP-----GEATKTGSLSGNIPL 109 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 41/184 (22%) Query: 96 RGIILTR--DGRFKVTDDGSLVSA------------SGKYPVLDMASVPIQIPQKDEIFN 141 G LT G G L +A +GK +D+ + +++F+ Sbjct: 157 DGKALTPPVTGTLNYNAQGELTNAAALRNIQINTTVNGKQIDMDLNLSGLTNYGTNQVFS 216 Query: 142 VGEKG---------EISQKGKV-----------IATMGLYSVDMSQGFVRRENSGISP-- 179 G I+ G + +A + + + G V+ N P Sbjct: 217 PTSDGKGAATVKDYAITDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLVKMGNGEYVPGL 276 Query: 180 ----NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 + ++ +G + LE SN + E ++ F T +I + M Sbjct: 277 SSGDAVYGVAGQNGAG-GISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMK 335 Query: 236 EAIR 239 + + Sbjct: 336 QIVN 339 >gi|313650472|gb|EFS14879.1| flagellar basal-body rod protein flgF [Shigella flexneri 2a str. 2457T] gi|323165585|gb|EFZ51372.1| flagellar basal-body rod protein flgF [Shigella sonnei 53G] gi|332758236|gb|EGJ88559.1| flagellar basal-body rod protein flgF [Shigella flexneri 4343-70] gi|332759657|gb|EGJ89962.1| flagellar basal-body rod protein flgF [Shigella flexneri 2747-71] gi|332761422|gb|EGJ91706.1| flagellar basal-body rod protein flgF [Shigella flexneri K-671] gi|332767684|gb|EGJ97877.1| flagella basal body rod family protein [Shigella flexneri 2930-71] gi|333004886|gb|EGK24406.1| flagellar basal-body rod protein flgF [Shigella flexneri VA-6] gi|333005551|gb|EGK25069.1| flagellar basal-body rod protein flgF [Shigella flexneri K-218] gi|333008279|gb|EGK27753.1| flagellar basal-body rod protein flgF [Shigella flexneri K-272] gi|333019416|gb|EGK38699.1| flagellar basal-body rod protein flgF [Shigella flexneri K-304] gi|333019769|gb|EGK39041.1| flagellar basal-body rod protein flgF [Shigella flexneri K-227] Length = 111 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 2/89 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAW 89 + G T LD AL+ D W Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGW 87 >gi|218509412|ref|ZP_03507290.1| flagellar hook protein FlgE [Rhizobium etli Brasil 5] Length = 196 Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 12/126 (9%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQ------GFVRRE 173 + Q + + G + K K + + L +V G V Sbjct: 69 GTGTPNGQAATPVKDVTIDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLTLMSGNVYSA 128 Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N + P + G T+K G LE SN + E+ +MI + + + + + Sbjct: 129 NGQSGVTVTGFPQTNGLG-TIKSGALEGSNVDLAGELTEMIEAQRSYTANSKVFQTGSDI 187 Query: 234 MLEAIR 239 M + Sbjct: 188 MDVLVN 193 >gi|313610124|gb|EFR85444.1| flagellar hook protein FlgE [Listeria monocytogenes FSL F2-208] Length = 129 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 48/117 (41%), Gaps = 17/117 (14%) Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGS 113 S G GS +TG D AL+G +F G I+ TRDG F V+D+ Sbjct: 18 GSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFIAGDNAGGNIVYTRDGSFAVSDNNY 77 Query: 114 LVSASGKYP----------VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 L + GKY VL+ PIQIP I GE ++ G + + L Sbjct: 78 LTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNSAIP-----GEATKNGSLSGNIPL 129 >gi|218663526|ref|ZP_03519456.1| flagellar hook protein FlgE [Rhizobium etli IE4771] Length = 384 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 15/149 (10%) Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFK 107 + + V + + G T + D A+ GD +F +E G +LTR G F Sbjct: 4 SSSGNYNSGGVQTSVRQAISQQGDISYTTSAYDLAISGDGFFIVEGADGTPVLTRAGDFS 63 Query: 108 VTDDGSLVSASGKYPVLD---MASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVD 164 V DG+LV+++G Y ++ + VP + G G + +A GL ++ Sbjct: 64 VDSDGNLVNSAG-YTLMGYSYDSGVP-------AVVVNGFDGLVPVN---VAQSGLSAIA 112 Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVT 193 + + + + + T + + Sbjct: 113 STSAYFSGNLNSEATVVTDTTTLPSANTS 141 Score = 69.3 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 34/167 (20%) Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKD----------------------EIFNVG 143 +G L SA+ V + + I + D ++ Sbjct: 216 LSFDANGQLTSATDTDIVDPVTAKTITMDYSDFTQLASDFSATGSADGQAASSVSSVSID 275 Query: 144 EKGEISQ-----KGKVIATMGLYSVDMSQGF------VRRENSGISPNIPPTPLEDLSGV 192 G +S K + + L +V V N + P + G Sbjct: 276 TDGVVSVSYANGTTKALYQIPLANVASPDNLTLLSGNVYTANGQSGVTVTGFPQTNGLG- 334 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +++ G LE SN + E+ +MI + + + + + M + Sbjct: 335 SIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 381 >gi|213028802|ref|ZP_03343249.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 293 Score = 70.8 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 176 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 235 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G + G LE SN + E+ MI + + S I ++ + + Sbjct: 236 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 291 >gi|218672515|ref|ZP_03522184.1| flagellar basal body rod protein FlgG [Rhizobium etli GR56] Length = 58 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 25/52 (48%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID 53 + I A + L +A+N++N +T GF+ + +F++++ + Sbjct: 1 MRALAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKG 52 >gi|315301940|ref|ZP_07872942.1| flagellar basal-body rod protein FlgG [Listeria ivanovii FSL F6-596] gi|313629693|gb|EFR97824.1| flagellar basal-body rod protein FlgG [Listeria ivanovii FSL F6-596] Length = 74 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A +Q LS ++N++N +T G++ V F++++ N + + Sbjct: 1 MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDLLYQ--NTMGSVAGGLY 58 Query: 61 SGKEYLSKEVGS 72 +G +S G+ Sbjct: 59 AGTNPMSFGSGA 70 >gi|255019026|ref|ZP_05291152.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL F2-515] Length = 168 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 6/138 (4%) Query: 85 EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGE 144 +G +F I L+R G+F G L +A G +L IQ+ QK Sbjct: 11 QGSNFFITAKNGEISLSRGGQFHSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEA 68 Query: 145 KGEIS--QKGKVIATMG--LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLE 200 G++ + + + +G S + + V+ + N T ++ G +E Sbjct: 69 NGDLYNAETSQYLGRLGTKFVSANQADSLVKDGEGRLHINGVNTMNLPAGQGIIQNGVIE 128 Query: 201 DSNANSMYEMGQMIHLTQ 218 SN + EM Q++ + Sbjct: 129 TSNVDLGVEMVQLMDNQR 146 >gi|218678737|ref|ZP_03526634.1| flagellar hook protein FlgE [Rhizobium etli CIAT 894] Length = 112 Score = 68.5 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 12/110 (10%) Query: 141 NVGEKGEISQKGKVIATMGLYSVDMSQ-----------GFVRRENSGISPNIPPTPLEDL 189 ++G G +S AT LY + ++ G V N + P + Sbjct: 1 SIGTDGVVSVSYANGATKSLYQIPLATVASPDNLTLMSGNVYSANGQSGVTVTGFPQTNG 60 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G +++ G LE SN + E+ +MI + + + + + M + Sbjct: 61 LG-SIQSGALESSNVDLAGELTEMIEAQRSYTANSKVFQTGSDIMDVLVN 109 >gi|289670507|ref|ZP_06491582.1| flagellar hook protein FlgE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 262 Score = 67.4 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSG------ISPNIPPTPLED 188 ++ G + + K + + L S QG + N+ P Sbjct: 151 ISIDTSGVVFARYSNGADKPLGQVALSSFVNPQGLQSQGNNMWAESYTSGAARTGAPNTS 210 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G V+ G LE S + ++ MI + F + + +I ++ I Sbjct: 211 DLG-QVESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIIN 260 >gi|291334314|gb|ADD93975.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 449 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 53/172 (30%), Gaps = 33/172 (19%) Query: 104 GRFKVTDDGSLVS-------ASGKYPVLDMASVPIQIPQKDEIFNVGEKG---------E 147 G DG +VS A G + S Q+ Q V + G E Sbjct: 279 GELTFDRDGQIVSPITDVKYAGGLTELTLDFSTATQLDQPFSAREVTQDGFSAGRLTNLE 338 Query: 148 ISQKGKV-----------IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV---- 192 I G V + + L S G + NS E G Sbjct: 339 IDTYGNVQAGYSNGQNVVLGKIMLASFASESGLKQIGNSTFIATAASGDPELGEGAEDGF 398 Query: 193 -TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + G +E SN + E+ +I + + + I E SM + I NI S Sbjct: 399 GQILSGSIERSNVDITEELVNLITSQRNYQAAAKAI-ETSTSMTQTIINIRS 449 >gi|224418355|ref|ZP_03656361.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] Length = 727 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN----------IP 182 + E G I + I +G+ + QG + + N + Sbjct: 599 NDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGETSVVS 658 Query: 183 PTPL---EDLSGVTVKRG-----FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 PL E+ ++K G LE SN ++ + +I + + I ++ M Sbjct: 659 GPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLM 718 Query: 235 LEAIR 239 EAI+ Sbjct: 719 QEAIQ 723 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 34/137 (24%) Query: 40 KFSEVVGAIKNDIDQKIS-------FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL 92 +F + N ++ V G ++ G++++ + + A G WF + Sbjct: 2 EFKSLFSTHLNYVNSNSPVANDYNYGVTIGSNAINTNDGTYVNADGDFNVAYSGKGWFVV 61 Query: 93 ---------------ESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD 137 + TRDG F + +G LV++SG Y Sbjct: 62 GLNKNGAFDITNPDYTGAQQNYFTRDGSFSLDGEGYLVNSSGYYMYGINLG--------- 112 Query: 138 EIFNVGEKGEISQKGKV 154 + G ++ + Sbjct: 113 ---KIAADGTLTGANNL 126 >gi|291526818|emb|CBK92404.1| flagellar hook-associated protein FlgK [Eubacterium rectale M104/1] Length = 569 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF +G + + L+T A+NM+N +T G+ +V+FS+ +N+ + SG Sbjct: 7 SFYVGSSGLKNSQNALNTTANNMANVNTTGYVRQQVRFSDKHYITRNNPTAGTNIQQSGL 66 Query: 64 EYLSKEV 70 +V Sbjct: 67 GVSVSDV 73 >gi|238782792|ref|ZP_04626821.1| Flagellar basal body FlaE domain protein [Yersinia bercovieri ATCC 43970] gi|238716215|gb|EEQ08198.1| Flagellar basal body FlaE domain protein [Yersinia bercovieri ATCC 43970] Length = 359 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 24/184 (13%) Query: 68 KEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMA 127 G ++T +L+ ++G A+ G L F + G + +D Sbjct: 189 DTSGQLVTTPAKLN--IQGAAF-----NGGEPL----NFDLDLAGM--TQQASETSMDRQ 235 Query: 128 SVPIQIPQKDEIFNVGEKGEISQ-----KGKVIATMGLYSVDMSQGFVRRENS-GISPNI 181 S P + VG+ GEI + +++ + L S G + ++ + Sbjct: 236 STTGYAPGMMNGYTVGDGGEIIASYSNGEQQLLGQVVLSSFTNPGGLSSQGDNCWLETPE 295 Query: 182 PPTPLEDLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 P+ +SG + LE SN + EM MI + + S + I + +L+ Sbjct: 296 SGQPVTGISGTGNLGKLSGNKLEASNVDLSKEMVNMIVYQRNYQSNSQTIKTQSE-LLQI 354 Query: 238 IRNI 241 + N+ Sbjct: 355 LANL 358 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%) Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVS 116 V + G + LD ++G+ +F L + G + +R+G+FK DG +V+ Sbjct: 2 GVQVSSVNQNFSDGVLGMGNSSLDMGIQGNGFFRLTNDAGRVFYSRNGQFKTDADGFIVN 61 Query: 117 ASGKYPVL------------DMASVPIQIPQKDEIFNVGEKGEISQK 151 G A PIQIP + G ++ Sbjct: 62 NQGMNLTGFQATGNPPTIQPGAAVGPIQIPNGQMPARASDSGILNGN 108 >gi|238922533|ref|YP_002936046.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC 33656] gi|238874205|gb|ACR73912.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC 33656] gi|291526373|emb|CBK91960.1| flagellar hook-associated protein FlgK [Eubacterium rectale DSM 17629] Length = 569 Score = 66.2 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 SF +G + + L+T A+NM+N +T G+ +V+FS+ +N+ + SG Sbjct: 7 SFYVGSSGLKNSQNALNTTANNMANVNTTGYVRQQVRFSDKHYITRNNPTAGTNIQQSGL 66 Query: 64 EYLSKEV 70 +V Sbjct: 67 GVSVSDV 73 >gi|313141887|ref|ZP_07804080.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] gi|313130918|gb|EFR48535.1| flagellar hook protein FlgE [Helicobacter canadensis MIT 98-5491] Length = 708 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 23/125 (18%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPN----------IP 182 + E G I + I +G+ + QG + + N + Sbjct: 580 NDIVINEDGIILVNFTNGKVEPIGRIGIAAFVNDQGLSKVGGNLFKMNAMTINGETSVVS 639 Query: 183 PTPL---EDLSGVTVKRG-----FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 PL E+ ++K G LE SN ++ + +I + + I ++ M Sbjct: 640 GPPLLAWEETGNASLKYGQVLDHMLETSNVDTGTALTDLIVYQRGYQMSAKSITTADQLM 699 Query: 235 LEAIR 239 EAI+ Sbjct: 700 QEAIQ 704 Score = 55.8 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 27/112 (24%) Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL---------------ESPRGIILTR 102 V G ++ G++++ + + A G WF + + TR Sbjct: 8 GVTIGSNAINTNDGTYVNADGDFNVAYSGKGWFVVGLNKNGAFDITNPDYTGAQQNYFTR 67 Query: 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKV 154 DG F + +G LV++SG Y + G ++ + Sbjct: 68 DGSFSLDGEGYLVNSSGYYMYGINLG------------KIAADGTLTGANNL 107 >gi|24459279|gb|AAL86632.1| FlgG [Vibrio fischeri ES114] Length = 43 Score = 65.8 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 M + + A + ++T+++N++N TVGF+ + F + Sbjct: 1 MNPALWVSKTGLDAQQTNIATISNNLANASTVGFKKSRAVFED 43 >gi|332092853|gb|EGI97921.1| flagellar basal-body rod protein flgF [Shigella dysenteriae 155-74] Length = 111 Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 2/89 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASMPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAW 89 + G T LD AL+ D W Sbjct: 59 ASTPGADMTPGKMDYTSRPLDVALQQDGW 87 >gi|260222468|emb|CBA32062.1| hypothetical protein Csp_D30240 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 104 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 + + + QG + E S + +P E G T + G LEDSN + Sbjct: 11 QARGQLLVADFRNVQGLTQIAGGNWIETSASGQPVLGSPGEGKFGKT-RSGALEDSNVDL 69 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ M+ + + + I ++ M + Sbjct: 70 TGELVNMMTAQRNYQANAQTIKTQDQIMSTLVN 102 >gi|323163702|gb|EFZ49522.1| flagellar basal-body rod protein flgF domain protein [Escherichia coli E128010] Length = 75 Score = 65.1 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 175 SGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 S S L+ + V G LE SN N++ M MI ++F +I + + Sbjct: 6 SAESQATRGPILQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNA 65 Query: 235 LEA 237 A Sbjct: 66 GRA 68 >gi|218674651|ref|ZP_03524320.1| flagellar hook protein FlgE [Rhizobium etli GR56] Length = 77 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +T G++ + FS +V + + V + Sbjct: 6 SMKTAVSGMSAQANRLSTVSDNIANANTTGYKAVSTSFSSLVLPSSSG-NYNSGGVQTSV 64 Query: 64 EYLSKEVGSFIST 76 + G T Sbjct: 65 RQAISQQGDISYT 77 >gi|218461124|ref|ZP_03501215.1| flagellar hook protein FlgE [Rhizobium etli Kim 5] Length = 91 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 7/89 (7%) Query: 157 TMGLYSVDMSQ------GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 + L +V G V N + P + G T+K G LE SN + E+ Sbjct: 1 RIPLANVASPDKLTLMSGNVYSANGQSGVTVTGFPQTNGLG-TIKSGALEGSNVDLAGEL 59 Query: 211 GQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +MI + + + + + M + Sbjct: 60 TEMIESQRSYTANSKVFQTGSDIMDVLVN 88 >gi|296127542|ref|YP_003634794.1| flagellar basal-body rod protein FlgC [Brachyspira murdochii DSM 12563] gi|296019358|gb|ADG72595.1| flagellar basal-body rod protein FlgC [Brachyspira murdochii DSM 12563] Length = 153 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N N + EM M+ ++ + + +T+I + A+ Sbjct: 107 GYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALN 149 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS 42 N + A RL +ADN++N +T FR +V F Sbjct: 7 INTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVIFK 50 >gi|300870979|ref|YP_003785850.1| flagellar basal body rod protein FlgC [Brachyspira pilosicoli 95/1000] gi|300688678|gb|ADK31349.1| flagellar basal body rod protein, FlgC [Brachyspira pilosicoli 95/1000] Length = 153 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N N + EM M+ ++ + + +T+I + A+ Sbjct: 107 GYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALN 149 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS 42 N + A RL +ADN++N +T FR +V F Sbjct: 7 INTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVVFK 50 >gi|225619783|ref|YP_002721040.1| flagellar basal body rod protein FlgC [Brachyspira hyodysenteriae WA1] gi|225214602|gb|ACN83336.1| flagellar basal body rod protein FlgC [Brachyspira hyodysenteriae WA1] Length = 153 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N N + EM M+ ++ + + +T+I + A+ Sbjct: 107 GYVEMPNVNPVTEMVDMMEASRAYEANSTMIQSAKTMFGSALN 149 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS 42 N + A RL +ADN++N +T FR +V F Sbjct: 7 INTSGSGLTAQRTRLDVIADNIANVNTTRTTEGGAFRRSRVIFK 50 >gi|213421609|ref|ZP_03354675.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 147 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 10/111 (9%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 37 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 96 Query: 188 DLSGV----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM 234 +G + G LE SN + E+ MI + + S I ++ + Sbjct: 97 GTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQIL 147 >gi|237817504|ref|ZP_04596494.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] gi|237787259|gb|EEP61477.1| flagellar hook protein FlgE [Brucella abortus str. 2308 A] Length = 106 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A RLSTVADN++N TVG++ + +FS +V S + Sbjct: 6 MMR---TGVSGMNAQANRLSTVADNIANASTVGYKRAETQFSSLVLPSTAGQYNSGSVLT 62 Query: 61 SGKEYLSK 68 + +S Sbjct: 63 DVRYGISD 70 >gi|313895783|ref|ZP_07829337.1| flagellar hook-basal body complex protein FlhP domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975208|gb|EFR40669.1| flagellar hook-basal body complex protein FlhP domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 117 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 11/112 (9%) Query: 139 IFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPT------PLE 187 ++ G I+ + A + + G + + + Sbjct: 3 SVSIDTSGVITGTYTNGVRRAEAQVAVAKFPNPSGLTKLGGNLYQESNNSNVKTVQPQTV 62 Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +G + LE SN + + MI + F S + +I +++ + I Sbjct: 63 ETAGAKITPSSLEMSNVDISDQFSDMIITQRGFQSNSKIITVSDEMLETLIN 114 >gi|167469720|ref|ZP_02334424.1| flagellar hook protein FlgE [Yersinia pestis FV-1] Length = 73 Score = 62.8 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 5/75 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 F+ ++ A L + +N++N+ T GF+ V F+++ + + K++ + Sbjct: 2 GFSQAVSGMNAASSNLDVIGNNIANSATSGFKAGSVSFADMFAGSQTGMGVKVAGITQ-- 59 Query: 64 EYLSKEVGSFISTGT 78 G+ +T Sbjct: 60 ---DFNDGTATTTNR 71 >gi|328543139|ref|YP_004303248.1| hypothetical protein SL003B_1520 [polymorphum gilvum SL003B-26A1] gi|326412884|gb|ADZ69947.1| Conserved domain protein [Polymorphum gilvum SL003B-26A1] Length = 361 Score = 62.8 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 140 FNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 ++ G I +Q+ + + + L + Q R + S + +G T+ Sbjct: 254 LSIDGAGRIIASYSNQQTRSLFEIPLATFQADQNLRRVDGSAFAATPSSGKAAYGNGGTI 313 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SNA+ E ++I Q +++ + ++ ++ + +A+ Sbjct: 314 VANALESSNADIAAEFSKLIITQQAYSANSKVVTSADQMLNDALN 358 Score = 43.1 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Query: 81 DFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV---LDMASVPIQIPQKD 137 D ++G FA TR G F++ +DG +V+++G Y + LD + + Sbjct: 5 DAVIDGQTTFATT----EYYTRAGDFELNEDGYMVNSAGYYLMGFPLDARTGN-AVGDNP 59 Query: 138 EIFNVGEK 145 E+ +G + Sbjct: 60 EVIQIGSQ 67 >gi|213613181|ref|ZP_03371007.1| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 110 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 10/107 (9%) Query: 143 GEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLEDLSGV---- 192 G + +++ +V+ + L + ++G + ++ + L +G Sbjct: 2 NNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFG 61 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + G LE SN + E+ MI + + S I ++ + + Sbjct: 62 KLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 108 >gi|315281336|ref|ZP_07869982.1| flagellar basal body rod protein FlgG [Listeria marthii FSL S4-120] gi|313615012|gb|EFR88510.1| flagellar basal body rod protein FlgG [Listeria marthii FSL S4-120] Length = 152 Score = 62.4 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 6/139 (4%) Query: 98 IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEIS--QKGKVI 155 I L+R G+F G L +A G +L IQ+ QK G++ + + + Sbjct: 4 ISLSRGGQFHSDQFGFLRTADGA-NLLSATGEAIQVGQK-TSIRAEANGDLYNAETNQYL 61 Query: 156 ATMG--LYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQM 213 +G S + + V+ + N T ++ G +E SN + EM Q+ Sbjct: 62 GRLGTKFVSANQADSLVKDGEGRLHVNGVNTMNLPAGQGIIQNGVIETSNVDLGVEMVQL 121 Query: 214 IHLTQKFNSITTLIDENEK 232 + + + +++ +K Sbjct: 122 MDNQRMVQASKNVVNMFDK 140 >gi|296133051|ref|YP_003640298.1| flagellar basal-body rod protein FlgC [Thermincola sp. JR] gi|296031629|gb|ADG82397.1| flagellar basal-body rod protein FlgC [Thermincola potens JR] Length = 145 Score = 62.0 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 +G++E N N + EM MI T+ + + I ++ +A Sbjct: 98 AQGYVEMPNVNIVTEMVDMISATRAYEANVASIRATKEMFAKA 140 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M SF+I + A R+ +++N++N +T G +R F G + Sbjct: 3 MFDSFDISASGLTAQRLRMDLISENIANVNTTRTASGGPYRRKLAVFEAKNGDFDKVFQE 62 Query: 55 KISFVASGKEYLSKEV 70 ++ V+ GK ++ Sbjct: 63 RLDSVSPGKGVRVTKI 78 >gi|289679025|ref|ZP_06499915.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 137 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFV-RRENSGISPNIPPTPLEDLSG 191 + VG G + K I + L S G R + + D+ G Sbjct: 24 KSLEVGRDGILRAGFTNGMTKSIGQVMLASFANPHGLQPRSDTRWTATADSGVAEYDVPG 83 Query: 192 V----TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 V ++ G LE SN E+ +I + + + I M I++ Sbjct: 84 VGTLGSIVSGALEGSNVVLADELIALIQAQTAYQANSKAISTEVTLMQTLIQS 136 >gi|203284214|ref|YP_002221954.1| flagellar basal-body rod protein [Borrelia duttonii Ly] gi|203287753|ref|YP_002222768.1| flagellar basal-body rod protein [Borrelia recurrentis A1] gi|201083657|gb|ACH93248.1| flagellar basal-body rod protein [Borrelia duttonii Ly] gi|201084973|gb|ACH94547.1| flagellar basal-body rod protein [Borrelia recurrentis A1] Length = 154 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 25/45 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G++E N N + EM MI ++ + + +++I+ ++ A+ + Sbjct: 108 GYVEFPNVNVVEEMVDMISASRAYEANSSVINSSKSMFRSALSIL 152 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS 42 +S N A RL +A+N++N +T +R ++ F+ Sbjct: 7 SSINTASTGLTAQRLRLDVIANNIANVETTRTADGGAYRRERIIFA 52 >gi|219684534|ref|ZP_03539477.1| flagellar basal-body rod protein FlgC [Borrelia garinii PBr] gi|219685765|ref|ZP_03540576.1| flagellar basal-body rod protein FlgC [Borrelia garinii Far04] gi|219671896|gb|EED28950.1| flagellar basal-body rod protein FlgC [Borrelia garinii PBr] gi|219672704|gb|EED29732.1| flagellar basal-body rod protein FlgC [Borrelia garinii Far04] Length = 152 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 26/47 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + +T+I+ ++ A+ + S Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQS 152 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|86136709|ref|ZP_01055287.1| flagellar hook protein FlgE, putative [Roseobacter sp. MED193] gi|85826033|gb|EAQ46230.1| flagellar hook protein FlgE, putative [Roseobacter sp. MED193] Length = 388 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 56/159 (35%), Gaps = 28/159 (17%) Query: 49 KNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL------ESPRG---II 99 + V++ L + G + T D A+ G + E G ++ Sbjct: 5 SSGGRYSAGGVSASNMRLIDQRGPLVGTNNSTDLAVSGRGMLPVASLTEIEGGNGSPTML 64 Query: 100 LTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG 159 +T G F+ DG L + SG +L + P G +S + A G Sbjct: 65 MTTTGSFRTNADGYLTTNSG-LVLLGWPANP--------------DGTVSDGPRDTAE-G 108 Query: 160 LYSVDMSQGFVRRE---NSGISPNIPPTPLEDLSGVTVK 195 L V + + E N G+ N+P T E S TV+ Sbjct: 109 LEPVQYNMNQLTGEPTTNVGLGVNLPATDTEAGSAGTVR 147 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTP-----LEDL 189 V +G + +VI + L V G +N P+ D Sbjct: 276 VEVDPQGYVRANYDSGASRVIFKIPLVDVPNLNGLKSLDNQTYLPSSDSGSYFLWDAGDG 335 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 V E+S + E+ MI + ++S +I ++ + E Sbjct: 336 PTGEVASYAQEESATDVATELTDMIKTQRAYSSNAKVIQTVDEMLQETTN 385 >gi|315926654|gb|EFV06034.1| flagellar hook protein FlgE [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 594 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 140 FNVGEKGEI---SQKGKV--IATMGLYSVDMSQGFVRRENSGISPNIPPTP---LEDLSG 191 V +KG I GK +A M + SV + G + E +G Sbjct: 482 IRVDDKGNILGEFTNGKTFAVAKMAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTG 541 Query: 192 VT--VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +K LE SN + + ++I + + + + + I +++ + I+ Sbjct: 542 GRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQ 591 >gi|224531802|ref|ZP_03672434.1| flagellar basal-body rod protein FlgC [Borrelia valaisiana VS116] gi|224511267|gb|EEF81673.1| flagellar basal-body rod protein FlgC [Borrelia valaisiana VS116] Length = 152 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 26/47 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + +T+I+ ++ A+ + S Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQS 152 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|224534284|ref|ZP_03674862.1| flagellar basal-body rod protein FlgC [Borrelia spielmanii A14S] gi|224514386|gb|EEF84702.1| flagellar basal-body rod protein FlgC [Borrelia spielmanii A14S] Length = 152 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 26/47 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + +T+I+ ++ A+ + S Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQS 152 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|216264021|ref|ZP_03436015.1| flagellar basal-body rod protein FlgC [Borrelia afzelii ACA-1] gi|215980065|gb|EEC20887.1| flagellar basal-body rod protein FlgC [Borrelia afzelii ACA-1] Length = 152 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 26/47 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + +T+I+ ++ A+ + S Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQS 152 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|111115118|ref|YP_709736.1| flagellar basal body rod protein FlgC [Borrelia afzelii PKo] gi|110890392|gb|ABH01560.1| flagellar basal-body rod protein [Borrelia afzelii PKo] Length = 152 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 26/47 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + +T+I+ ++ A+ + S Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSALAILQS 152 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|226321611|ref|ZP_03797137.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi Bol26] gi|226232800|gb|EEH31553.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi Bol26] Length = 152 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM MI ++ + + +T+I+ ++ A+ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSAL 147 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|225552253|ref|ZP_03773193.1| flagellar basal-body rod protein FlgC [Borrelia sp. SV1] gi|225371251|gb|EEH00681.1| flagellar basal-body rod protein FlgC [Borrelia sp. SV1] Length = 152 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM MI ++ + + +T+I+ ++ A+ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSAL 147 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLAAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|15594638|ref|NP_212427.1| flagellar basal body rod protein FlgC [Borrelia burgdorferi B31] gi|195941353|ref|ZP_03086735.1| flagellar basal body rod protein FlgC [Borrelia burgdorferi 80a] gi|216264936|ref|ZP_03436928.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a] gi|218249308|ref|YP_002374816.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7] gi|221217671|ref|ZP_03589139.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a] gi|223888936|ref|ZP_03623527.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b] gi|224533191|ref|ZP_03673791.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi WI91-23] gi|224533682|ref|ZP_03674270.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi CA-11.2a] gi|225549042|ref|ZP_03770017.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a] gi|225550067|ref|ZP_03771027.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a] gi|226320594|ref|ZP_03796154.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 29805] gi|2494521|sp|Q57466|FLGC_BORBU RecName: Full=Flagellar basal-body rod protein flgC gi|1165277|gb|AAA85616.1| FlgC [Borrelia burgdorferi] gi|1196316|gb|AAB51408.1| flagellar basal body rod protein [Borrelia burgdorferi] gi|2688173|gb|AAC66655.1| flagellar basal-body rod protein (flgC) [Borrelia burgdorferi B31] gi|215981409|gb|EEC22216.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a] gi|218164496|gb|ACK74557.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7] gi|221192348|gb|EEE18567.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a] gi|223885752|gb|EEF56851.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b] gi|224511918|gb|EEF82319.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi WI91-23] gi|224512975|gb|EEF83338.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi CA-11.2a] gi|225369179|gb|EEG98632.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a] gi|225370268|gb|EEG99706.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a] gi|226234013|gb|EEH32734.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 29805] gi|312147876|gb|ADQ30535.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi JD1] gi|312149272|gb|ADQ29343.1| flagellar basal-body rod protein FlgC [Borrelia burgdorferi N40] Length = 152 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM MI ++ + + +T+I+ ++ A+ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSAL 147 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|211639036|emb|CAR67650.1| flagellar hook protein flge [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 72 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +F+ ++ A L + +N++N T GF++ F+++ + + K+S + Sbjct: 2 AFSQAVSGLNAAAANLDVIGNNIANAATYGFKSSSAAFADIFAGSQVGLGVKMSGINQ-- 59 Query: 64 EYLSKEVGSFISTGTE 79 + + G+ +T Sbjct: 60 ---NFKDGTPTTTNRT 72 >gi|1448943|gb|AAB04619.1| flagellar basal body distal rod protein [Borrelia burgdorferi] Length = 152 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM MI ++ + + +T+I+ ++ A+ Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVINSSKSMFRSAL 147 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 15/29 (51%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDT 31 +S N+ A R+ +++N++N T Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVST 33 >gi|159045788|ref|YP_001534582.1| flagellar basal body rod protein FlgC [Dinoroseobacter shibae DFL 12] gi|157913548|gb|ABV94981.1| flagellar basal-body rod protein FlgC [Dinoroseobacter shibae DFL 12] Length = 130 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 S + + +A QRL+ V+ N++N DT G++ + +F ++ + V+ Sbjct: 5 LKSMTVSASGLMAQAQRLNVVSQNIANVDTPGYQRKQAEFQQMFDTFDGTDGVAVLRVS 63 Score = 35.8 bits (82), Expect = 5.7, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G+ E SN ++M E+ + + + D N + M ++ + Sbjct: 84 GYYEGSNVSTMVEVADAREAQRSYEANLRSFD-NARQMSRSLLEL 127 >gi|187918167|ref|YP_001883730.1| flagellar basal body rod protein FlgC [Borrelia hermsii DAH] gi|119861015|gb|AAX16810.1| flagellar basal-body rod protein FlgC [Borrelia hermsii DAH] Length = 152 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 26/45 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G++E N N++ EM MI ++ + + +T+I+ ++ A+ + Sbjct: 106 GYVEFPNVNAVEEMVDMISASRAYEANSTVINSSKSMFRSALSIL 150 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS 42 +S N A RL +A+N++N +T +R +V F+ Sbjct: 5 SSINTASTGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRVIFA 50 >gi|51598553|ref|YP_072741.1| flagellar basal body rod protein FlgC [Borrelia garinii PBi] gi|51573124|gb|AAU07149.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 152 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 26/47 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + +T+++ ++ A+ + S Sbjct: 106 GYVELPNVNLVEEMVDMISASRAYEANSTVVNSSKSMFRSALAILQS 152 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +S N+ A R+ +++N++N T G +R ++ F+ Sbjct: 5 SSINVASTGLTAQRLRIDVISNNIANVSTSRTPDGGPYRRQRIIFA 50 >gi|289807286|ref|ZP_06537915.1| flagellar basal body rod protein FlgF [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 74 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGS 113 + V + G T LD AL+ D W +++ G TR+G +V G Sbjct: 10 TRTLVTASTPGADMTQGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQ 69 Query: 114 LV 115 L Sbjct: 70 LT 71 >gi|262364765|gb|ACY61322.1| flagellar hook protein [Yersinia pestis D182038] Length = 104 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 156 ATMGLYSVDMSQGFVRR------ENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 + L + G V + E++ + TP L G +++ G LE+SN + E Sbjct: 14 GKVVLANFASPSGLVTQNGTSWSESNKSGAALLGTPGTGLLG-SLESGALENSNVDITAE 72 Query: 210 MGQMIHLTQKFNSITTLIDENEKSM 234 + ++ + + + T +I N+ M Sbjct: 73 LVGLMTAQRNYQASTKIISTNDSMM 97 >gi|21748188|emb|CAD41958.1| flagellar hook protein [Pseudomonas fluorescens] Length = 181 Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 5/95 (5%) Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPN-IPPTPLEDLSGV----TVKRGFLEDSNA 204 Q+ K I + L S + QG + P D ++K LE+SN Sbjct: 85 QQSKAIGQISLASFNNEQGLQPAGGTTWKETFASGQPGYDAPESGTLGSIKASSLENSNV 144 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N E+ +I + + I M I+ Sbjct: 145 NLTNELVDLIKAQSNYQANAKTISTQSTIMQTIIQ 179 >gi|218509843|ref|ZP_03507721.1| flagellar hook protein FlgE [Rhizobium etli Brasil 5] Length = 65 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A RLSTV+DN++N +T G++ + FS +V S + Sbjct: 6 SMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGVQTSVR 65 >gi|119953092|ref|YP_945301.1| flagellar basal body rod protein FlgC [Borrelia turicatae 91E135] gi|119861863|gb|AAX17631.1| flagellar basal-body rod protein FlgC [Borrelia turicatae 91E135] Length = 152 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 24/36 (66%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 ++G++E N N++ EM MI ++ + + +T+I+ + Sbjct: 104 RKGYVEFPNVNAVEEMVDMISASRAYEANSTVINSS 139 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS 42 +S N A RL +A+N++N +T +R ++ FS Sbjct: 5 SSINTAATGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRIVFS 50 >gi|126653433|ref|ZP_01725529.1| flagellar basal-body rod protein [Bacillus sp. B14905] gi|126589789|gb|EAZ83922.1| flagellar basal-body rod protein [Bacillus sp. B14905] Length = 67 Score = 59.3 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV---KFSEVVGAI 48 M F + ++R +++N++N +T GF+ + F +++ + Sbjct: 1 MFKGFYTVATGMITQQRRTELLSNNLANANTPGFKADQSTIRSFPDMLMSS 51 >gi|207108270|ref|ZP_03242432.1| flagellar basal-body rod protein FlgG [Helicobacter pylori HPKX_438_CA4C1] Length = 49 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSM-LEAIRNIAS 243 LE SN N++ EM +I + + + + ++ ++ M EAI +A+ Sbjct: 1 MLEKSNVNAVREMSALIEINRFLDMYSKVLKTHQDDMNAEAINKLAT 47 >gi|161526188|ref|YP_001581200.1| flagellar basal body rod protein FlgC [Burkholderia multivorans ATCC 17616] gi|189349096|ref|YP_001944724.1| flagellar basal body rod protein FlgC [Burkholderia multivorans ATCC 17616] gi|221199737|ref|ZP_03572780.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans CGD2M] gi|221208658|ref|ZP_03581658.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans CGD2] gi|221215569|ref|ZP_03588532.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans CGD1] gi|160343617|gb|ABX16703.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans ATCC 17616] gi|189333118|dbj|BAG42188.1| flagellar basal-body rod protein [Burkholderia multivorans ATCC 17616] gi|221164557|gb|EED97040.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans CGD1] gi|221171469|gb|EEE03916.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans CGD2] gi|221179976|gb|EEE12380.1| flagellar basal-body rod protein FlgC [Burkholderia multivorans CGD2M] Length = 141 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 17/132 (12%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVR 171 V+AS D A+ P P K + G + G+ + + + V ++ Sbjct: 24 VTAS-NLANADSATGPDGKPYKAKQVVFATDPIGGARTASGQGVGGVRVTKVIDDPSPMK 82 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S P P D + G+++ N + + EM MI ++ + + ++ + Sbjct: 83 ------STYDPANPAADAN------GYVQMPNVDPVQEMVNMISASRSYQANVETLNTAK 130 Query: 232 KSMLEAIRNIAS 243 + ML+ + I S Sbjct: 131 QLMLKTL-TIGS 141 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS-EVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F+ + +G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPIGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + A + + + ++ P Sbjct: 65 GVGGVRVTKVIDDPS--PMKSTYDPANPAADANGY--VQMPN 102 >gi|325529011|gb|EGD06024.1| flagellar basal body rod protein FlgC [Burkholderia sp. TJI49] Length = 141 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 17/132 (12%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVR 171 V+AS D A+ P P K + G + G+ + + + V ++ Sbjct: 24 VTAS-NLANADSATGPDGKPYKAKQVVFATDPIGGARTASGQGVGGVRVTKVVDDPSPMK 82 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S P P D + G+++ N + + EM MI ++ + + ++ + Sbjct: 83 ------STYDPANPAADAN------GYVQMPNVDPVQEMVNMISASRSYQANVETLNTAK 130 Query: 232 KSMLEAIRNIAS 243 + ML+ + I S Sbjct: 131 QLMLKTL-TIGS 141 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS-EVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F+ + +G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPIGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + A + + + ++ P Sbjct: 65 GVGGVRVTKVVDDPS--PMKSTYDPANPAADANGY--VQMPN 102 >gi|114320055|ref|YP_741738.1| flagellar basal-body rod protein FlgC [Alkalilimnicola ehrlichii MLHE-1] gi|114226449|gb|ABI56248.1| flagellar basal-body rod protein FlgC [Alkalilimnicola ehrlichii MLHE-1] Length = 151 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 27/44 (61%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ SN N + EM MI ++ + + +++ +++ +L+ +R Sbjct: 104 QGYVYRSNVNPVEEMTNMISASRSYQNNVEVMNTSKELLLQTLR 147 Score = 42.7 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 6/47 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVV 45 F++ + A + RL+TVA N++N++TV +R+ + F+ V+ Sbjct: 7 FDVSGSGMNAQQTRLNTVASNLANSETVAGSPEQAYRSRQPVFASVL 53 >gi|255030384|ref|ZP_05302335.1| flagellar hook protein FlgE [Listeria monocytogenes LO28] Length = 189 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 11/102 (10%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 90 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 144 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 LE SN + E ++ F T +I + M + + Sbjct: 145 SLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 186 >gi|328947992|ref|YP_004365329.1| flagellar basal-body rod protein FlgC [Treponema succinifaciens DSM 2489] gi|328448316|gb|AEB14032.1| flagellar basal-body rod protein FlgC [Treponema succinifaciens DSM 2489] Length = 153 Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI + + + +++I +++ A+ IAS Sbjct: 107 GYVEYPNVNIVNEMVNMISANRAYEANSSVIQGSKEMFASAL-EIAS 152 Score = 43.9 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 13/30 (43%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 TS NI R +++N++N T Sbjct: 5 TSINIAATGMSVERLRTDVISNNIANATTT 34 >gi|254516995|ref|ZP_05129053.1| flagellar hook-associated protein FlgK [gamma proteobacterium NOR5-3] gi|219674500|gb|EED30868.1| flagellar hook-associated protein FlgK [gamma proteobacterium NOR5-3] Length = 639 Score = 58.5 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M NIG +A L+L++ +ST N++N +T GF +V+F+ + + + ++ Sbjct: 1 MADVLNIGTSALLSLQRAISTTGHNIANVNTEGFSRQRVEFAALEPQLSGAGFVGSGVTI 60 Query: 59 VASGKEYLSKEVGSF 73 A + Y G Sbjct: 61 AAITRSYDQYLAGDV 75 >gi|254251189|ref|ZP_04944507.1| flagella basal body rod protein [Burkholderia dolosa AUO158] gi|124893798|gb|EAY67678.1| flagella basal body rod protein [Burkholderia dolosa AUO158] Length = 141 Score = 58.5 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 17/132 (12%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVR 171 V+AS D A+ P P K + G + G+ + + + V ++ Sbjct: 24 VTAS-NLANADSATGPDGKPYKAKQVVFATDPMGGARTASGQGVGGVRVTKVIDDPSPMK 82 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S P P D + G+++ N + + EM MI ++ + + ++ + Sbjct: 83 ------STYDPANPAADEN------GYVQMPNVDPVQEMVNMISASRSYQANVETLNTAK 130 Query: 232 KSMLEAIRNIAS 243 + ML+ + I S Sbjct: 131 QLMLKTL-TIGS 141 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS-EVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F+ + +G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPMGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + A + + + ++ P Sbjct: 65 GVGGVRVTKVIDDPS--PMKSTYDPANPAADENGY--VQMPN 102 >gi|225377360|ref|ZP_03754581.1| hypothetical protein ROSEINA2194_03008 [Roseburia inulinivorans DSM 16841] gi|225210785|gb|EEG93139.1| hypothetical protein ROSEINA2194_03008 [Roseburia inulinivorans DSM 16841] Length = 51 Score = 58.1 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT 36 M + ++RL + +N++N DT G++ Sbjct: 1 MIKGLYTAYTGMVNEQKRLDVLTNNLANADTNGYKK 36 >gi|255021352|ref|ZP_05293400.1| Flagellar basal-body rod protein flgC [Acidithiobacillus caldus ATCC 51756] gi|254969215|gb|EET26729.1| Flagellar basal-body rod protein flgC [Acidithiobacillus caldus ATCC 51756] Length = 138 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 8/88 (9%) Query: 156 ATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIH 215 A G+ V + G V + P P + G+++ N N + EM MI Sbjct: 59 APAGVEGVQV-AGVVEKPGPLKLVYEPGNPAANAE------GYVQMPNVNPVDEMVNMIS 111 Query: 216 LTQKFNSITTLIDENEKSMLEAIRNIAS 243 ++ + + +++ + + + + + + Sbjct: 112 ASRAYQANVNVMNTTKALLQKTL-TLGA 138 Score = 37.3 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 17/101 (16%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKISF 58 ++ +A A RL+ VA N++N ++ G +R +V F+ + Sbjct: 7 LDVASSALTAQSYRLNVVASNLANANSATSSDGQPYRAREVVFA---ATPLHSGQAPAGV 63 Query: 59 VASGKEYLSKEVGSFI---STGTELDFALEGDAWFALESPR 96 + ++ G G A + + ++ P Sbjct: 64 EGVQVAGVVEKPGPLKLVYEPGNP---AANAEGY--VQMPN 99 >gi|121997321|ref|YP_001002108.1| flagellar basal-body rod protein FlgC [Halorhodospira halophila SL1] gi|121588726|gb|ABM61306.1| flagellar basal-body rod protein FlgC [Halorhodospira halophila SL1] Length = 189 Score = 58.1 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 25/43 (58%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N++ EM MI ++ F + +++ + MLE +R Sbjct: 144 GYVYRSNVNTVEEMTNMISASRSFQNNVEVMNTSRDLMLETLR 186 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQK 55 + ++ A + RL+TVA N++N +TV +R + F+ + + Q Sbjct: 4 MNAIDVAGTGMNAQQLRLNTVASNLANAETVASSPEEAYRARQPVFAAALHQAQGGYPQG 63 Query: 56 ISFVASGKEYLSKEVGSF 73 + ++ G Sbjct: 64 GGPQPAHTPTWAESGGPV 81 >gi|310659047|ref|YP_003936768.1| flagellar component of cell-proximal portion of basal-body rod [Clostridium sticklandii DSM 519] gi|308825825|emb|CBH21863.1| flagellar component of cell-proximal portion of basal-body rod [Clostridium sticklandii] Length = 146 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 26/42 (61%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ SN +++ EM MI T+ + + T ++ ++ +L+A+ Sbjct: 101 GYVTMSNVDTITEMVDMISATRSYEANVTALNTSKSMLLKAL 142 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 +S NI +A A R+ ++ N++N +T G +R V F E Sbjct: 5 SSINISASALTAERTRMDVISKNLANANTTRTQSGDPYRRQVVVFKE 51 >gi|302389656|ref|YP_003825477.1| flagellar basal-body rod protein FlgC [Thermosediminibacter oceani DSM 16646] gi|302200284|gb|ADL07854.1| flagellar basal-body rod protein FlgC [Thermosediminibacter oceani DSM 16646] Length = 147 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 S I + A R+ +++N++N +T G +R +V F E Sbjct: 5 RSLEISASGLTAQRLRMDVISNNIANVNTTRTEEGGPYRRQRVIFQE 51 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI T+ + + T I+ + + +A+ Sbjct: 101 GYVRMPNVNIVTEMVDMISATRSYEANITAINSAKGMITKAL 142 >gi|320354315|ref|YP_004195654.1| flagellar basal-body rod protein FlgC [Desulfobulbus propionicus DSM 2032] gi|320122817|gb|ADW18363.1| flagellar basal-body rod protein FlgC [Desulfobulbus propionicus DSM 2032] Length = 145 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM M+ T+ + + TT I ++ + A+ +I S Sbjct: 100 GYVEMPNVNVLKEMVDMMSTTRSYEANTTTIKSAKRMAMRAL-DIGS 145 Score = 43.1 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFS 42 T+F+I + A RL+T++ N++N++T ++ V F Sbjct: 5 TTFDIAASGLKAQTMRLNTISANLANSETTSTPEGGPYKKKSVVFQ 50 >gi|90577350|ref|ZP_01233161.1| putative flagellar hook-associated protein [Vibrio angustum S14] gi|90440436|gb|EAS65616.1| putative flagellar hook-associated protein [Vibrio angustum S14] Length = 455 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 3/75 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NIGL A + L A N++N +T GF + + + G NDI S V Sbjct: 1 MNMINIGLTGLNANKTALDVTAHNIANVNTPGFSRQQAMMNALAG---NDILSAGSGVEI 57 Query: 62 GKEYLSKEVGSFIST 76 + T Sbjct: 58 ASIRRISDQFIVKQT 72 >gi|167630286|ref|YP_001680785.1| flagellar basal-body rod protein flgb, putative [Heliobacterium modesticaldum Ice1] gi|167593026|gb|ABZ84774.1| flagellar basal-body rod protein flgb, putative [Heliobacterium modesticaldum Ice1] Length = 137 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 14/86 (16%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A R +ADN++N DT G++ +V+F + + A+ + ++ S ++ Sbjct: 16 GLDAASTRHQVIADNLANVDTPGYKRKEVQFEDELAAVIDREASGMTGKRSDPRHIPLNG 75 Query: 71 G--------------SFISTGTELDF 82 G SF + G +D Sbjct: 76 GIGDLSVRVVTQESESFRNDGNNVDV 101 >gi|325567534|ref|ZP_08144201.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus ATCC 12755] gi|325158967|gb|EGC71113.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus ATCC 12755] Length = 158 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 11/109 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE----VVGAIKNDIDQKISFVASGKEY 65 A QR ++ N++N +T G++ ++ F + + D + S + Sbjct: 48 TAMNVSAQRAELISSNIANVNTDGYKAKRIVFESELKQALASSGTDAVTEASVSQVKPKI 107 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 S G +D +E ++ G+ + +G L Sbjct: 108 TENATTSIKDNGNNVDLEVE----MLDQAANGLYYS---ALTAQVNGRL 149 >gi|207108617|ref|ZP_03242779.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1] Length = 294 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGF-----LEDSNANSMYE 209 +A + L + G + S + T +RG LE SN + Sbjct: 202 LAQVALANFANDAGLQALGGNVFSQTGNSGQALIGAANTGRRGSISGSKLESSNVDLSRS 261 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 262 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 291 >gi|167585192|ref|ZP_02377580.1| flagellar basal-body rod protein FlgC [Burkholderia ubonensis Bu] Length = 141 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 12/91 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + G+ + + + V ++ S P P D + G+++ N + + Sbjct: 60 TASGQGVGGVRVAKVIDDPSPMK------STYDPANPAADAN------GYVQMPNVDPVQ 107 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 EM MI ++ + + ++ ++ ML+ + Sbjct: 108 EMVNMISASRSYQANVETLNTAKQLMLKTLT 138 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKF-SEVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F ++ G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNIANADSATGPDGKPYKAKQVVFAADPQGRARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + A + + + ++ P Sbjct: 65 GVGGVRVAKVIDDPS--PMKSTYDPANPAADANGY--VQMPN 102 >gi|322380221|ref|ZP_08054447.1| flagellar hook protein FlgE [Helicobacter suis HS5] gi|321147348|gb|EFX42022.1| flagellar hook protein FlgE [Helicobacter suis HS5] Length = 619 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNI-PPTPLEDLSGVTVKRGF----LEDSNANSMYE 209 +A + L + G S S L + + G LE SN + Sbjct: 527 LAQVALANFANDAGLQADGGSVFSETSNSGKALIGAANTGRRGGVSGSKLESSNVDLSRS 586 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + +I + + F + + + +++ + + Sbjct: 587 LTNLIVVQRGFQANSKAVTTSDQILNTLLN 616 >gi|119899029|ref|YP_934242.1| flagellar basal-body rod protein FlgC [Azoarcus sp. BH72] gi|119671442|emb|CAL95355.1| flagellar basal-body rod protein FlgC [Azoarcus sp. BH72] Length = 146 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 11/109 (10%) Query: 142 VGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-EDLSGVTVK----- 195 + E G+ + +V+ G VR + + S + T + E + + + Sbjct: 35 IAEDGQPYRAKQVVFAAKPVGATPPVGGVRDKGAAASVGVQVTQVVESAAPMRLVYEPHN 94 Query: 196 -----RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N N + EM MI ++ + + +++ + + ++ Sbjct: 95 PAANAEGYVEMPNVNVVEEMVNMISASRSYQNNAEVMNTAQTLLQRTLQ 143 Score = 40.0 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M F I +A A RL+T A N++N D+V G +R +V F+ + Sbjct: 3 MLNVFQIAGSALNAQSLRLNTTASNLANADSVIAEDGQPYRAKQVVFAAKPVGATPPVGG 62 Query: 55 KISFVASGKEYLSKEV 70 A+ + Sbjct: 63 VRDKGAAASVGVQVTQ 78 >gi|78044505|ref|YP_359818.1| flagellar hook-associated protein FlgK [Carboxydothermus hydrogenoformans Z-2901] gi|77996620|gb|ABB15519.1| flagellar hook-associated protein 1 [Carboxydothermus hydrogenoformans Z-2901] Length = 473 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 1 MQT-SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS 42 M S L++ A + L + N++N +T G+ +V F+ Sbjct: 1 MFNISLETALSSLRAQQLALDITSHNIANANTPGYTRQRVNFA 43 Score = 36.2 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 16/43 (37%) Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E + EM MI +++ ++ ++ M I + Sbjct: 427 ESGGVSIDEEMANMILYQNAYSAAARIVTAIDEMMDIVINRMG 469 >gi|320529387|ref|ZP_08030475.1| flagellar basal-body rod protein FlgC [Selenomonas artemidis F0399] gi|320138353|gb|EFW30247.1| flagellar basal-body rod protein FlgC [Selenomonas artemidis F0399] Length = 151 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + TT I+ KSM+ A I S Sbjct: 104 GYVERPNVNIVSEMVDMISASRGYEANTTTINAA-KSMVNAALRIGS 149 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 6/32 (18%), Positives = 15/32 (46%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M + + A R+ +++N++N +T Sbjct: 3 MFLGIDAAASGLTAERLRMDVISNNIANANTT 34 >gi|330889084|gb|EGH21745.1| flagellar hook protein FlgE [Pseudomonas syringae pv. mori str. 301020] Length = 419 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 138 EIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRR------ENSGISPNIPPTPL 186 +VG G + K I + L S QG R E++ P Sbjct: 306 SSLSVGRDGILRAGFTNGMNKNIGQVILASFANPQGLQARSDTRWTESADSGVADYDVPG 365 Query: 187 EDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 G + G LE +N E+ +I + + + I M I++ Sbjct: 366 VGTLGSLIGDG-LEGANVVLADELIALIQAQTAYQANSKAISTEATVMQTLIQS 418 >gi|147678426|ref|YP_001212641.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] gi|146274523|dbj|BAF60272.1| flagellar basal body rod protein [Pelotomaculum thermopropionicum SI] Length = 147 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 9/73 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG---------FRTIKVKFSEVVGAIKNDID 53 SF I + A RL +++N++N +T G +R F++V+ +++ Sbjct: 5 DSFAISASGLTAERLRLDLISNNIANMNTAGRPDDPAVPAYRRRFPVFAQVLQEVRSAGT 64 Query: 54 QKISFVASGKEYL 66 + + +G + Sbjct: 65 ARPRYKGAGVRVI 77 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI T+ + + T ++ + L+AI Sbjct: 107 NINIVNEMINMITATRSYEANVTALNAAKDIALKAI 142 >gi|45656202|ref|YP_000288.1| flagellar basal body rod protein FlgC [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599436|gb|AAS68925.1| flagellar basal-body rod protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 155 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM MI ++ + + +I+ ++ +A+ Sbjct: 109 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKAL 150 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 7/45 (15%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG---FRTIKVK 40 +S NI A R+ +++N++N+ +T G FR +V Sbjct: 7 SSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVV 51 >gi|330721008|gb|EGG99169.1| Flagellar hook protein FlgE [gamma proteobacterium IMCC2047] Length = 92 Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPN------IPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + +GL + +G + N+ + + TP GV ++ G LE+SN + Sbjct: 1 MGQVGLANFSNVEGLSPQGNTQWAETFDSGNPVVGTPGSASLGV-LQSGALEESNVDLSA 59 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E+ +I + + + I E E ++ +AI I Sbjct: 60 ELVSLILAQRNYQANARAI-ETESAVTQAILQI 91 >gi|294827625|ref|NP_710527.2| flagellar basal body rod protein FlgC [Leptospira interrogans serovar Lai str. 56601] gi|293385469|gb|AAN47545.2| flagellar basal body rod protein FlgC [Leptospira interrogans serovar Lai str. 56601] Length = 153 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM MI ++ + + +I+ ++ +A+ Sbjct: 107 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKAL 148 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 7/45 (15%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG---FRTIKVK 40 +S NI A R+ +++N++N+ +T G FR +V Sbjct: 5 SSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVV 49 >gi|15639388|ref|NP_218837.1| flagellar basal body rod protein FlgC [Treponema pallidum subsp. pallidum str. Nichols] gi|189025630|ref|YP_001933402.1| flagellar basal body rod protein FlgC [Treponema pallidum subsp. pallidum SS14] gi|3322680|gb|AAC65385.1| flagellar basal-body rod protein (flgC) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018205|gb|ACD70823.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidum SS14] Length = 129 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N + + EM +I ++ + + ++I +++ A+ Sbjct: 84 GYVEYPNVDIVTEMVDLISASRAYEANISVISGSKEMFQRAL 125 >gi|207110390|ref|ZP_03244552.1| flagellar hook protein FlgE [Helicobacter pylori HPKX_438_CA4C1] Length = 107 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 16/101 (15%) Query: 153 KVIATMGLYSVDMSQGFVRRENS----------GISPNIPPTPLED------LSGVTVKR 196 + +A +G+ + QG + + G + + P+ L ++ Sbjct: 7 EPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRH 66 Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 +LE SN N+ + +I + + ++ + + EA Sbjct: 67 KYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEA 107 >gi|307718596|ref|YP_003874128.1| hypothetical protein STHERM_c09080 [Spirochaeta thermophila DSM 6192] gi|306532321|gb|ADN01855.1| hypothetical protein STHERM_c09080 [Spirochaeta thermophila DSM 6192] gi|315186391|gb|EFU20151.1| flagellar basal-body rod protein FlgC [Spirochaeta thermophila DSM 6578] Length = 152 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 17/82 (20%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE-----------VVGA 47 NI A R+ +++N++N T G FR +V F + Sbjct: 7 INIAATGLTAQRLRMDVISNNIANATTTRTTEGGPFRRSRVVFRPRVEQPYWRSPFLPKP 66 Query: 48 IKNDIDQKISFVASGKEYLSKE 69 + N + + + V K+Y +K Sbjct: 67 LDNGLGKGVRVVKVEKDYDAKT 88 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ + + +++ ++ L+A+ Sbjct: 107 GYVEYPNVNIVNEMVDLIDASRAYEANLAVVNGSKTMFLKAL 148 >gi|297570257|ref|YP_003691601.1| protein of unknown function DUF1078 domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296926172|gb|ADH86982.1| protein of unknown function DUF1078 domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 118 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 34/83 (40%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M T + L+ LAL+Q+ + A N +N +T G++ ++V E V + + Sbjct: 1 MVTGIHSALSGLLALQQKTAATAHNTANVNTDGYKKVRVTLHEGVAPGTVEPRAEKIETP 60 Query: 61 SGKEYLSKEVGSFISTGTELDFA 83 G + + +D A Sbjct: 61 GPVVQEQTAAGPEMVEKSNVDLA 83 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 18/42 (42%) Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN + EM ++ + + + ++ ++ + + Sbjct: 74 MVEKSNVDLAQEMPNLMLSRRYYQANLKVVQSEDERLGSLLN 115 >gi|116327145|ref|YP_796865.1| flagellar basal body rod protein FlgC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332198|ref|YP_801916.1| flagellar basal body rod protein FlgC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119889|gb|ABJ77932.1| Endoflagellar proximal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125887|gb|ABJ77158.1| Endoflagellar proximal basal body rod protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 153 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM MI ++ + + +I+ ++ +A+ Sbjct: 107 GYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKAL 148 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 7/45 (15%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG---FRTIKVK 40 +S NI A R+ +++N++N+ +T G FR +V Sbjct: 5 SSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVV 49 >gi|149203129|ref|ZP_01880100.1| flagellar basal-body rod protein FlgC [Roseovarius sp. TM1035] gi|149143675|gb|EDM31711.1| flagellar basal-body rod protein FlgC [Roseovarius sp. TM1035] Length = 130 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 12/93 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + ++ + A QRL V++N++N DT G+R V F +S V Sbjct: 6 NALSVSASGLKAQAQRLQHVSENIANADTPGYRRKTVSFEATHAGTGTAGAVTVSRVHLD 65 Query: 63 KEYLSK----------EVGSFISTGTELDFALE 85 + + E G + G+ +D +E Sbjct: 66 QSAPQRIYDPSHPLADETGHYQ--GSTVDLMIE 96 >gi|313895871|ref|ZP_07829425.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon 137 str. F0430] gi|312975296|gb|EFR40757.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon 137 str. F0430] Length = 151 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + T I+ KSM+ A I S Sbjct: 104 GYVERPNVNIVSEMVDMISASRGYEANATTINAA-KSMVNAALRIGS 149 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 6/32 (18%), Positives = 15/32 (46%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M + + A R+ +++N++N +T Sbjct: 3 MFLGIDAAASGLTAERLRMDVISNNIANANTT 34 >gi|260772274|ref|ZP_05881190.1| flagellar hook protein FlgE [Vibrio metschnikovii CIP 69.14] gi|260611413|gb|EEX36616.1| flagellar hook protein FlgE [Vibrio metschnikovii CIP 69.14] Length = 356 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 18/114 (15%) Query: 80 LDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASGKYP-----------VL 124 +D + G +FA+ P+ LTR+G F + + +V+++ +Y VL Sbjct: 1 MDLRIAGTGFFAVAKDRLIPQQNELTRNGAFHLDKNNYMVTSNDQYLLGYEVNPDNGEVL 60 Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMG---LYSVDMSQGFVRRENS 175 PI IP + E+S + L+ + + R +S Sbjct: 61 SYEPKPINIPAQFGKPKQTGNIELSANLPANGDLKDPALFDITDPDTYNRTTSS 114 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 9/114 (7%) Query: 131 IQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-----P 185 I + + G+ + + + V QG ++ + Sbjct: 245 IDFDEYGSVLATYSNGQ----NVTLGRVAMVRVANEQGLDKKGGTQWDSTQQSGVKIWGE 300 Query: 186 LEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S T+ G LE SN + E+ +I + F + + ++ + ++ Sbjct: 301 SSKGSFGTISNGVLEQSNIDMTQELVDLISAQRNFQANSRALEVHTGLQQTILQ 354 >gi|134297200|ref|YP_001120935.1| flagellar basal body rod protein FlgC [Burkholderia vietnamiensis G4] gi|134140357|gb|ABO56100.1| flagellar basal-body rod protein FlgC [Burkholderia vietnamiensis G4] Length = 141 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 16/128 (12%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVR 171 V+AS D A+ P P K + G + G+ + + + V ++ Sbjct: 24 VTAS-NLANADSATGPDGKPYKAKQVVFATDPLGGARTASGQGVGGVRVTKVVDDPSPMK 82 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S P P D + G+++ N + + EM MI ++ + + ++ + Sbjct: 83 ------STYDPANPAADAN------GYVQMPNVDPVQEMVNMISASRSYQANVETLNTAK 130 Query: 232 KSMLEAIR 239 ML+ + Sbjct: 131 TLMLKTLT 138 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS-EVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F+ + +G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPLGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + A + + + ++ P Sbjct: 65 GVGGVRVTKVVDDPS--PMKSTYDPANPAADANGY--VQMPN 102 >gi|332297607|ref|YP_004439529.1| flagellar basal-body rod protein FlgC [Treponema brennaborense DSM 12168] gi|332180710|gb|AEE16398.1| flagellar basal-body rod protein FlgC [Treponema brennaborense DSM 12168] Length = 151 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ + + +++I ++ A+ Sbjct: 106 GYVEYPNVNIVNEMVDLISASRAYEANSSVIQGSKDMFSSAL 147 Score = 43.1 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 TS NI R ++DN++N T Sbjct: 5 TSINIAATGMSVERLRTDVISDNIANASTT 34 >gi|148976392|ref|ZP_01813098.1| flagellar basal-body rod protein C [Vibrionales bacterium SWAT-3] gi|145964215|gb|EDK29471.1| flagellar basal-body rod protein C [Vibrionales bacterium SWAT-3] Length = 137 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ SN N M EM MI ++ + + + D +++ +L ++ Sbjct: 92 GFIYKSNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 134 Score = 36.2 bits (83), Expect = 4.6, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKND 51 FN+ +A A RL+T + N++N D+V ++ F + +N Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKETYKARHAVFGAELNRARNS 59 >gi|15642198|ref|NP_231830.1| flagellar basal body rod protein FlgC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586290|ref|ZP_01676080.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 2740-80] gi|121726545|ref|ZP_01679794.1| flagellar basal-body rod protein FlgC [Vibrio cholerae V52] gi|147675208|ref|YP_001217716.1| flagellar basal body rod protein FlgC [Vibrio cholerae O395] gi|153817070|ref|ZP_01969737.1| flagellar basal-body rod protein FlgC [Vibrio cholerae NCTC 8457] gi|153820804|ref|ZP_01973471.1| flagellar basal-body rod protein FlgC [Vibrio cholerae B33] gi|227082323|ref|YP_002810874.1| flagellar basal-body rod protein FlgC [Vibrio cholerae M66-2] gi|229507724|ref|ZP_04397229.1| flagellar basal-body rod protein FlgC [Vibrio cholerae BX 330286] gi|229512081|ref|ZP_04401560.1| flagellar basal-body rod protein FlgC [Vibrio cholerae B33] gi|229519217|ref|ZP_04408660.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC9] gi|229607228|ref|YP_002877876.1| flagellar basal body rod protein FlgC [Vibrio cholerae MJ-1236] gi|254849328|ref|ZP_05238678.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MO10] gi|255747102|ref|ZP_05421047.1| flagellar basal-body rod protein FlgC [Vibrio cholera CIRS 101] gi|262161354|ref|ZP_06030464.1| flagellar basal-body rod protein FlgC [Vibrio cholerae INDRE 91/1] gi|262167775|ref|ZP_06035477.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC27] gi|298500423|ref|ZP_07010228.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MAK 757] gi|9656755|gb|AAF95344.1| flagellar basal-body rod protein FlgC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549556|gb|EAX59582.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 2740-80] gi|121630998|gb|EAX63377.1| flagellar basal-body rod protein FlgC [Vibrio cholerae V52] gi|126512338|gb|EAZ74932.1| flagellar basal-body rod protein FlgC [Vibrio cholerae NCTC 8457] gi|126521596|gb|EAZ78819.1| flagellar basal-body rod protein FlgC [Vibrio cholerae B33] gi|146317091|gb|ABQ21630.1| flagellar basal-body rod protein FlgC [Vibrio cholerae O395] gi|227010211|gb|ACP06423.1| flagellar basal-body rod protein FlgC [Vibrio cholerae M66-2] gi|227014095|gb|ACP10305.1| flagellar basal-body rod protein FlgC [Vibrio cholerae O395] gi|229343906|gb|EEO08881.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC9] gi|229352046|gb|EEO16987.1| flagellar basal-body rod protein FlgC [Vibrio cholerae B33] gi|229355229|gb|EEO20150.1| flagellar basal-body rod protein FlgC [Vibrio cholerae BX 330286] gi|229369883|gb|ACQ60306.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MJ-1236] gi|254845033|gb|EET23447.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MO10] gi|255735504|gb|EET90904.1| flagellar basal-body rod protein FlgC [Vibrio cholera CIRS 101] gi|262023840|gb|EEY42539.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC27] gi|262028665|gb|EEY47319.1| flagellar basal-body rod protein FlgC [Vibrio cholerae INDRE 91/1] gi|297541116|gb|EFH77170.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MAK 757] Length = 138 Score = 56.6 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + ++ P PL + G++ SN N M EM MI ++ + + + Sbjct: 70 GIVESDKPLVAEFNPEHPLANDE------GYIYKSNVNVMEEMANMISASRSYQTNVQVA 123 Query: 228 DENEKSMLEAIR 239 D +++ +L ++ Sbjct: 124 DASKQMLLRTLQ 135 Score = 35.0 bits (80), Expect = 8.4, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 FN+ +A A RL+T + N++N D++ ++ F + + + D + Sbjct: 7 FNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGAELSKARFNRDPNVPV 66 Query: 59 VASG 62 G Sbjct: 67 KVLG 70 >gi|300114793|ref|YP_003761368.1| flagellar hook-associated protein FlgK [Nitrosococcus watsonii C-113] gi|299540730|gb|ADJ29047.1| flagellar hook-associated protein FlgK [Nitrosococcus watsonii C-113] Length = 647 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFVASG 62 IG + LA ++ L+T + N++N +T GF + + + + I + Sbjct: 7 LGIGASGLLAAQRALATTSHNIANVNTPGFSRQRAELAARLPEFTGQGFIGTGVDVTTVR 66 Query: 63 KEYLSK 68 + Y S Sbjct: 67 RAYDSF 72 >gi|149189842|ref|ZP_01868122.1| putative flagellar hook-associated protein [Vibrio shilonii AK1] gi|148836328|gb|EDL53285.1| putative flagellar hook-associated protein [Vibrio shilonii AK1] Length = 457 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T G+ + + + G + + + + Sbjct: 1 MNLVNIALSGMNANRVALDVTAQNVANINTPGYSRQQAVMASLAGGKYDKTNPGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|292492369|ref|YP_003527808.1| flagellar hook-associated protein FlgK [Nitrosococcus halophilus Nc4] gi|291580964|gb|ADE15421.1| flagellar hook-associated protein FlgK [Nitrosococcus halophilus Nc4] Length = 647 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKISFVASG 62 +IGL+ LA+++ L+T + N++N +T GF + + S + K I ++ Sbjct: 7 LSIGLSGLLAMQRSLATTSHNIANVNTPGFSRQRTELSASLPESTAKGFIGTGVNVATVR 66 Query: 63 KEYLSK 68 + Y + Sbjct: 67 RAYDAF 72 >gi|188586014|ref|YP_001917559.1| flagellar basal-body rod protein FlgB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350701|gb|ACB84971.1| flagellar basal-body rod protein FlgB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 134 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Query: 7 IGLAA--QLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 IGL +R +++N++N +T GF+ +V F E Sbjct: 7 IGLLGNSLNGTTKRHEVISNNIANVNTPGFKRGRVDFEE 45 >gi|85706171|ref|ZP_01037266.1| flagellar basal-body rod protein FlgC [Roseovarius sp. 217] gi|85669335|gb|EAQ24201.1| flagellar basal-body rod protein FlgC [Roseovarius sp. 217] Length = 130 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 12/93 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + ++ + A QRL V++N++N DT G+R V F + ++S V Sbjct: 6 NALSVSASGLKAQAQRLVHVSENIANADTPGYRRKTVSFETAFAGSEGTGAVEVSRVNLD 65 Query: 63 KE----------YLSKEVGSFISTGTELDFALE 85 + L+ E G + G+ +D +E Sbjct: 66 RRELQKIYDPSHPLADETGHYQ--GSTVDLMIE 96 >gi|254246963|ref|ZP_04940284.1| Flagellar basal-body rod protein FlgC [Burkholderia cenocepacia PC184] gi|124871739|gb|EAY63455.1| Flagellar basal-body rod protein FlgC [Burkholderia cenocepacia PC184] Length = 141 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVR 171 V+AS D A+ P P K + G + G+ + + + V ++ Sbjct: 24 VTAS-NLANADSATGPDGKPYKAKQVVFATDPLGGARTASGQGVGGVRVTKVMDDPSPMK 82 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S P P D + G+++ N + + EM MI ++ + + ++ + Sbjct: 83 ------STYDPANPAADAN------GYVQMPNVDPVQEMVNMISASRSYQANVETLNTAK 130 Query: 232 KSMLEAIRNIAS 243 ML+ + I S Sbjct: 131 TLMLKTL-TIGS 141 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS-EVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F+ + +G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPLGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + A + + + ++ P Sbjct: 65 GVGGVRVTKVMDDPS--PMKSTYDPANPAADANGY--VQMPN 102 >gi|145297460|ref|YP_001140301.1| lateral flagellar hook-associated protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850232|gb|ABO88553.1| lateral flagellar hook-associated protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 439 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + NIGL+ A + L+ A N++N +T+G+ + + G + D + Sbjct: 1 MSMLNIGLSGLNAAQIALNVTAQNIANVNTIGYSRQEAMMGSLSGFGRLDNGMGVEVTGV 60 Query: 62 GKEYLSK 68 + Sbjct: 61 RRITDDY 67 >gi|147678427|ref|YP_001212642.1| flagellar basal body protein [Pelotomaculum thermopropionicum SI] gi|146274524|dbj|BAF60273.1| flagellar basal body protein [Pelotomaculum thermopropionicum SI] Length = 133 Score = 56.2 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 A R +A+N++N +T GF+ V+F + Sbjct: 13 GLDAAALRHRVIANNIANANTPGFKKSAVEFESLF 47 >gi|254499106|ref|ZP_05111796.1| hypothetical protein LDG_3179 [Legionella drancourtii LLAP12] gi|254351645|gb|EET10490.1| hypothetical protein LDG_3179 [Legionella drancourtii LLAP12] Length = 408 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 8/104 (7%) Query: 33 GFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFAL 92 GF+ V F +G + + SG + G+++ + D A+ G +F + Sbjct: 5 GFKRSDV-FYSSLGNGQGEEGMGHGVRVSGMR-TNYGPGNYLKGMGDSDLAIVGHGFFVV 62 Query: 93 ESPRGII-LTRDGRFKVTDDGSLVSASGKYPVLD----MASVPI 131 + TRDG F +DG L+ V PI Sbjct: 63 KLKNNEFVYTRDGHFNF-EDGILIDRKTGGQVQGYDSAGNLAPI 105 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 113 SLVSASGKYPVLDMASVPIQIPQKDEI-----FNVGEKGEI---SQKGKVIATM--GLYS 162 L + G + ++ I + ++ E+G+I G+ I + GL Sbjct: 265 QLDTVEGAFSNEKRTNIEIDYNDGYGVGKQSYWSFDEEGQIAYYYDNGQTIKGIHVGLAR 324 Query: 163 VDMSQGFVRRENSGISPNIPPTPL----EDLSGVT-VKRGFLEDSNANSMYEMGQMIHLT 217 D + + + + + +G ++ LE SN +S E ++ L Sbjct: 325 FDDMENNLIQTQDNFFRAKTNRGIHYGRPNNNGFECIRANELEASNVDSTAEFANIVVLQ 384 Query: 218 QKFNSITTLIDENEKSMLE 236 + F + + ++D +K +LE Sbjct: 385 RMFQACSQIMDI-DKQLLE 402 >gi|257871286|ref|ZP_05650939.1| flagellar basal-body rod protein FlgB [Enterococcus gallinarum EG2] gi|257805450|gb|EEV34272.1| flagellar basal-body rod protein FlgB [Enterococcus gallinarum EG2] Length = 136 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 11/109 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE----VVGAIKNDIDQKISFVASGKEY 65 A QR ++ N++N +T G++ ++ F + + D + S + Sbjct: 26 TAMNVSAQRAELISSNIANVNTDGYKAKRIVFESELKQALASSGTDAATEASVSQVKPKI 85 Query: 66 LSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 S G +D +E ++ G+ + +G L Sbjct: 86 TENATTSIKDNGNNVDLEVE----MLDQAANGLYYS---ALTAQVNGRL 127 >gi|119384843|ref|YP_915899.1| flagellar basal body rod protein FlgC [Paracoccus denitrificans PD1222] gi|119374610|gb|ABL70203.1| flagellar basal body rod protein [Paracoccus denitrificans PD1222] Length = 130 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%) Query: 1 MQTSFNI---GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 M S + ++ + RL +++N++N DT G+R V F E V D + Sbjct: 1 MTNSLSATELAVSGMKSQAVRLRHISENIANADTPGYRRKLVAFREQV-----DFGRPTG 55 Query: 58 FVASGKEYLSKE 69 V G + Sbjct: 56 AVTPGPPRFDRR 67 >gi|320535379|ref|ZP_08035493.1| flagellar basal-body rod protein FlgC [Treponema phagedenis F0421] gi|320147781|gb|EFW39283.1| flagellar basal-body rod protein FlgC [Treponema phagedenis F0421] Length = 152 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ + + ++I +++ A+ Sbjct: 107 GYVEYPNVNIVTEMVDLISASRAYEANASVILGSKEMFQRAL 148 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G---FRTIKVKFSE 43 M +S NI A R ++DN++N + G F+ +V SE Sbjct: 3 MFSSINIAATGMSAERLRTDVISDNIANASSTRTQEGEGPFKRSRVILSE 52 >gi|107023955|ref|YP_622282.1| flagellar basal body rod protein FlgC [Burkholderia cenocepacia AU 1054] gi|116691042|ref|YP_836665.1| flagellar basal body rod protein FlgC [Burkholderia cenocepacia HI2424] gi|170734376|ref|YP_001766323.1| flagellar basal body rod protein FlgC [Burkholderia cenocepacia MC0-3] gi|206558966|ref|YP_002229726.1| flagellar basal body rod protein FlgC [Burkholderia cenocepacia J2315] gi|105894144|gb|ABF77309.1| flagellar basal-body rod protein FlgC [Burkholderia cenocepacia AU 1054] gi|116649131|gb|ABK09772.1| flagellar basal-body rod protein FlgC [Burkholderia cenocepacia HI2424] gi|169817618|gb|ACA92201.1| flagellar basal-body rod protein FlgC [Burkholderia cenocepacia MC0-3] gi|198035003|emb|CAR50875.1| flagellar basal-body rod protein FlgC (putative proximal rod protein) [Burkholderia cenocepacia J2315] Length = 141 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVR 171 V+AS D A+ P P K + G + G+ + + + V ++ Sbjct: 24 VTAS-NLANADSATGPDGKPYKAKQVVFATDPMGGARTASGQGVGGVRVTKVMDDPSPMK 82 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S P P D + G+++ N + + EM MI ++ + + ++ + Sbjct: 83 ------STYDPANPAADAN------GYVQMPNVDPVQEMVNMISASRSYQANVETLNTAK 130 Query: 232 KSMLEAIRNIAS 243 ML+ + I S Sbjct: 131 TLMLKTL-TIGS 141 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS-EVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F+ + +G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPMGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + A + + + ++ P Sbjct: 65 GVGGVRVTKVMDDPS--PMKSTYDPANPAADANGY--VQMPN 102 >gi|297617136|ref|YP_003702295.1| flagellar basal-body rod protein FlgC [Syntrophothermus lipocalidus DSM 12680] gi|297144973|gb|ADI01730.1| flagellar basal-body rod protein FlgC [Syntrophothermus lipocalidus DSM 12680] Length = 145 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI T+ + + + ++ + ++A+ Sbjct: 100 GYVNMPNVNVVSEMVDMISATRAYEANVSAVEATKSMAMKAL 141 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +F+I + A R+ +++N++N +T G +R V F Sbjct: 4 LNAFDISASGMTAQRLRMDVISNNLANVNTTRTPQGGPYRRQMVIFE 50 >gi|304404241|ref|ZP_07385903.1| flagellar basal-body rod protein FlgB [Paenibacillus curdlanolyticus YK9] gi|304347219|gb|EFM13051.1| flagellar basal-body rod protein FlgB [Paenibacillus curdlanolyticus YK9] Length = 136 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A + E R ++DN++N DT F+ +V F +++ ++KI+ + + ++ Sbjct: 14 TAIQSAETRQKVISDNIANVDTPNFKRSEVLFEDLLADAMGTNEKKIAGIRTNARHIPIG 73 Query: 70 VGSFIST 76 S I T Sbjct: 74 QSSSIPT 80 >gi|330447910|ref|ZP_08311558.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492101|dbj|GAA06055.1| flagellar hook-associated protein FlgK [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 455 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 NIGL+ A + L A N++N +TVG+ + S + G + Sbjct: 1 MNMINIGLSGLNANKTALDVTAHNVANVNTVGYSRQQAMMSALAGRELFSAGSGV 55 >gi|315281334|ref|ZP_07869981.1| flagellar basal body rod protein FlgG [Listeria marthii FSL S4-120] gi|313615022|gb|EFR88519.1| flagellar basal body rod protein FlgG [Listeria marthii FSL S4-120] Length = 111 Score = 55.8 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 16/112 (14%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVARQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFALE------GDAWFALESPRGI 98 V +++ GS T + DF ++ G +F I Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTNPTLGSNFFITAKNGEI 111 >gi|313673746|ref|YP_004051857.1| flagellar basal-body rod protein flgc [Calditerrivibrio nitroreducens DSM 19672] gi|312940502|gb|ADR19694.1| flagellar basal-body rod protein FlgC [Calditerrivibrio nitroreducens DSM 19672] Length = 134 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N N + EM MI ++ + + T+++ ++ + A+ Sbjct: 88 GYVQYPNVNPIEEMVNMIEASRSYEANVTVLNTAKQLAMRAL 129 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDT----VG--FRTIKVKFSEVVGAIKNDIDQKI 56 N+ A R++ ++ N++N +T G ++ V F E++ + Sbjct: 5 NILNVAATGLSAQRIRINVISSNLANANTTKTETGEPYKRKDVVFKELLEGEYTGGVRVE 64 Query: 57 SFVASGKEYL 66 V K ++ Sbjct: 65 KVVEDKKPFV 74 >gi|291059787|gb|ADD72522.1| flagellar basal-body rod protein FlgC [Treponema pallidum subsp. pallidum str. Chicago] Length = 152 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N + + EM +I ++ + + ++I +++ A+ Sbjct: 107 GYVEYPNVDIVTEMVDLISASRAYEANISVISGSKEMFQRAL 148 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 13/76 (17%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 + NI A R ++DN++N + G FR +V V+ ID +I Sbjct: 6 SGINIAATGMSAQRLRADVISDNIANASSTRTQEGGVFRRSRV----VLAQKNPGIDWRI 61 Query: 57 SFVASGKEYLSKEVGS 72 FV E L + VG+ Sbjct: 62 PFVP---EQLDRGVGT 74 >gi|90408058|ref|ZP_01216229.1| flagellar basal-body rod protein FlgC [Psychromonas sp. CNPT3] gi|90310815|gb|EAS38929.1| flagellar basal-body rod protein FlgC [Psychromonas sp. CNPT3] Length = 140 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSN 203 KG +S G + +G+ D P +P D GF+ SN Sbjct: 56 AKGALSSSGVGVKVLGIVESDAP---------LAREYAPNSPSADKD------GFVYHSN 100 Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N M EM MI ++ + + + D ++ + ++ Sbjct: 101 VNVMEEMANMISASRSYQTNVQIADAAKQMLSRTLQ 136 Score = 37.3 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 10/65 (15%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTD--------TVGFRTIKVKFSEVVGAIKNDIDQ 54 +I A RL+T A N++N + T +R F+ + K + Sbjct: 5 RILDISATGMSAQSVRLNTTASNLANANSVSSSSEKT--YRARHPVFAAELNKAKGALSS 62 Query: 55 KISFV 59 V Sbjct: 63 SGVGV 67 >gi|88858145|ref|ZP_01132787.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas tunicata D2] gi|88819762|gb|EAR29575.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas tunicata D2] Length = 140 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 GF+ SN N + EM MI ++ + + L D + + + I Sbjct: 94 GFIYKSNVNVVEEMANMISASRAYQTNVQLADAAKSMLSKTI 135 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 10/95 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKF-SEVVGAIKNDIDQK 55 F+I A RL+T A NMSN ++V +R F +E+ A + + Sbjct: 5 NVFDISATGMSAQSVRLNTTASNMSNANSVSSSIDQTYRARHPVFAAELTKAAASQQGES 64 Query: 56 ISFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 + G K + D + Sbjct: 65 VGVKVLGIVESDK---PLQIEFNPTHPMADKDGFI 96 >gi|77165832|ref|YP_344357.1| hypothetical protein Noc_2369 [Nitrosococcus oceani ATCC 19707] gi|254433787|ref|ZP_05047295.1| flagellar hook-associated protein FlgK [Nitrosococcus oceani AFC27] gi|76884146|gb|ABA58827.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090120|gb|EDZ67391.1| flagellar hook-associated protein FlgK [Nitrosococcus oceani AFC27] Length = 647 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 1 MQTS--FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKI 56 M +S IG + LA ++ L+T + N++N +T GF + + + + I + Sbjct: 1 MASSDLLGIGASGLLAAQRALATTSHNIANVNTPGFSRQRTELAARLPEFTGQGFIGTGV 60 Query: 57 SFVASGKEYLSK 68 + Y S Sbjct: 61 DVTTVRRAYDSF 72 >gi|296274397|ref|YP_003657028.1| hypothetical protein Arnit_2873 [Arcobacter nitrofigilis DSM 7299] gi|296098571|gb|ADG94521.1| protein of unknown function DUF1078 domain protein [Arcobacter nitrofigilis DSM 7299] Length = 913 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S NI + A + + +N++N +T G++ V+ SE + + + ++ Sbjct: 1 MLDSLNIAQSGLKAAQTAVENTMNNIANVNTEGYKKRVVETSETDQLPGSKLGRGVTVGN 60 Query: 61 S 61 + Sbjct: 61 T 61 >gi|317492422|ref|ZP_07950851.1| flagellar hook-associated protein FlgK [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919761|gb|EFV41091.1| flagellar hook-associated protein FlgK [Enterobacteriaceae bacterium 9_2_54FAA] Length = 561 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISF 58 M N ++ A + LS ++N+SN T G+ V F++ + I ++ Sbjct: 1 MANLINSAMSGLSAAQTALSVTSNNLSNVYTQGYNRQTVSFAQSGGISTSTGFIGNGVNV 60 Query: 59 VASGKEYLSKEVGSFIS 75 +EY S VG Sbjct: 61 SGINREYNSFIVGQLRQ 77 >gi|302338075|ref|YP_003803281.1| flagellar basal-body rod protein FlgC [Spirochaeta smaragdinae DSM 11293] gi|301635260|gb|ADK80687.1| flagellar basal-body rod protein FlgC [Spirochaeta smaragdinae DSM 11293] Length = 152 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM M+ ++ + + +++ ++ + A+ Sbjct: 107 GYVEMPNVNIVEEMVDMMSASRSYEANVAVVNGSKAMFMRAL 148 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 17/80 (21%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE-----------VV 45 +S N+ A RL V+DN++N T G FR +V F + Sbjct: 5 SSINVAATGMSAQRLRLDVVSDNIANASTARTPEGGPFRRSRVIFRARNSQPYWRSPFLP 64 Query: 46 GAIKNDIDQKISFVASGKEY 65 A+ N + + + + K+ Sbjct: 65 TALDNGVGRGVRVASVQKDM 84 >gi|255521621|ref|ZP_05388858.1| flagellar basal body rod protein FlgG [Listeria monocytogenes FSL J1-175] Length = 106 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 16/107 (14%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV---------GAIKNDI 52 IG A + Q + ++N++N T GF+ ++ SEV+ G + + Sbjct: 1 MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLT-SEVISRNKVNYQNGPVARQV 59 Query: 53 DQKISFVASGKEYLSKEVGSFISTGTELDFAL------EGDAWFALE 93 V +++ GS T + DF + +G +F + Sbjct: 60 GTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNFFITD 106 >gi|78224306|ref|YP_386053.1| flagellar basal-body rod protein FlgC [Geobacter metallireducens GS-15] gi|78195561|gb|ABB33328.1| Flagellar basal-body rod protein FlgC [Geobacter metallireducens GS-15] Length = 147 Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +G++ N N + EM MI T+ + + T + + L+ + + S Sbjct: 99 AQGYVALPNVNVVEEMADMIAATRAYEANVTAVQAAKGMALKTL-ELGS 146 Score = 41.6 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 6/74 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 ++ I +A A R++ ++ N++N ++ G ++ F+ A K + Sbjct: 5 SAMQISSSALSAERTRMNLISSNIANANSTRTAEGGPYKRKDAVFAATPAAEKFQAAMER 64 Query: 57 SFVASGKEYLSKEV 70 + + Sbjct: 65 MRRGTSPAGVQVTQ 78 >gi|260886629|ref|ZP_05897892.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC 35185] gi|330839539|ref|YP_004414119.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC 35185] gi|260863772|gb|EEX78272.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC 35185] gi|329747303|gb|AEC00660.1| flagellar basal-body rod protein FlgC [Selenomonas sputigena ATCC 35185] Length = 147 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N N + EM MI ++ + + T I+ + A+ Sbjct: 102 GYVERPNINIVQEMVDMITASRAYEANVTAINAAKGMAQNALN 144 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 6/32 (18%), Positives = 15/32 (46%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M + + A R+ +++N++N +T Sbjct: 3 MFGGIDASASGLTAERLRMDVISNNIANANTT 34 >gi|78067839|ref|YP_370608.1| flagellar basal body rod protein FlgC [Burkholderia sp. 383] gi|77968584|gb|ABB09964.1| Flagellar basal-body rod protein FlgC [Burkholderia sp. 383] Length = 141 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVR 171 V+AS D A+ P P K + G + G+ + + + V ++ Sbjct: 24 VTAS-NLANADSATGPDGKPYKAKQVVFATDPIGGARTASGQGVGGVRVTKVMDDPSPMK 82 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S P P D + G+++ N + + EM MI ++ + + ++ + Sbjct: 83 ------STYDPSNPAADSN------GYVQMPNVDPVQEMVNMISASRSYQANVETLNTAK 130 Query: 232 KSMLEAIRNIAS 243 ML+ + I S Sbjct: 131 TLMLKTL-TIGS 141 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS-EVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F+ + +G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPIGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + A + + + ++ P Sbjct: 65 GVGGVRVTKVMDDPS--PMKSTYDPSNPAADSNGY--VQMPN 102 >gi|306820111|ref|ZP_07453759.1| flagellar basal-body rod protein FlgC [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551889|gb|EFM39832.1| flagellar basal-body rod protein FlgC [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 145 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + EM MI + + + T ++ ++ + +AI Sbjct: 100 GYVKMPNVELITEMVDMITAQRAYEANATAVNTSKAMLQKAI 141 Score = 42.3 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 + NI A A R+ ++ N++N T G ++ F E Sbjct: 5 SGMNINATALTAERLRMDIISKNIANAQTTRTKNGLPYKRQVAVFKE 51 >gi|296134284|ref|YP_003641531.1| flagellar hook-associated protein FlgK [Thermincola sp. JR] gi|296032862|gb|ADG83630.1| flagellar hook-associated protein FlgK [Thermincola potens JR] Length = 479 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 NIG A A ++ L A N++N +T GF + + +++ I G Sbjct: 7 GLNIGRQALQAQQRALDVTAHNIANANTEGFSRQRAVMATTTPFAYPSVNRPIGAGQIGT 66 Query: 64 EYLSKEV 70 + +EV Sbjct: 67 GVMVEEV 73 Score = 43.9 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 16/43 (37%) Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E S + EM MI +N+ I ++ + + + Sbjct: 433 EVSGVSLDEEMTNMIKFQHAYNAAARTITAMDEMLDTIVNRLG 475 >gi|303240290|ref|ZP_07326809.1| flagellar basal-body rod protein FlgC [Acetivibrio cellulolyticus CD2] gi|302592200|gb|EFL61929.1| flagellar basal-body rod protein FlgC [Acetivibrio cellulolyticus CD2] Length = 146 Score = 55.4 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N + + EM MI T+ + + T I+ + ++A+ Sbjct: 101 GYVEMPNVDILTEMVNMISATRSYEANVTSINTTKSMAMKAL 142 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDT------VGFRTIKVKFSE 43 +S +IG + A R+ T++ N++N +T +R V F E Sbjct: 5 SSLDIGASGLTAQRLRMDTISQNIANANTTRTENGTAYRRKVVVFEE 51 >gi|326791545|ref|YP_004309366.1| flagellar basal-body rod protein FlgC [Clostridium lentocellum DSM 5427] gi|326542309|gb|ADZ84168.1| flagellar basal-body rod protein FlgC [Clostridium lentocellum DSM 5427] Length = 145 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 23/44 (52%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++E N N++ EM MI ++ + + T + + +A+ Sbjct: 98 AQGYVEMPNVNTVDEMVNMISASRSYEANVTSFNTMKSMFAKAL 141 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 16/106 (15%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDI---- 52 S +I + A RL ++ NM+N +T G ++ V F ++ Sbjct: 5 DSMDIAASGLTAQRLRLDIISQNMANVNTTRTAEGGPYKRKTVIFEQMQNENSFSSILNK 64 Query: 53 --DQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 ++ V + + G+ + + +E P Sbjct: 65 KKQSGVNGVRVARIVEDESQGALVY--NPTHPDANAQGY--VEMPN 106 >gi|307546970|ref|YP_003899449.1| flagellar basal body rod protein FlgC [Halomonas elongata DSM 2581] gi|307218994|emb|CBV44264.1| flagellar basal body rod protein FlgC [Halomonas elongata DSM 2581] Length = 135 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 25/43 (58%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G+++ N + EM MI ++ + + ++D N++ +L+ + Sbjct: 88 QGYVDMPNVDPAAEMVNMISASRSYQANVEVMDTNKQLLLKTL 130 Score = 41.6 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS 42 M + F I +A A QR++ A N++N D+V +R +V F Sbjct: 3 MFSVFEISGSAMSAQSQRMNVTASNLANADSVAGPDGEAYRAKQVLFE 50 >gi|323341388|ref|ZP_08081632.1| flagellar basal-body rod protein FlgC [Lactobacillus ruminis ATCC 25644] gi|323091265|gb|EFZ33893.1| flagellar basal-body rod protein FlgC [Lactobacillus ruminis ATCC 25644] Length = 139 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + T + S + + +N+ P P D + G++E N N EM Sbjct: 55 QAQGTNKITSAGVKVTNIAEDNTTKLTYDPTNPDADAN------GYVEMPNVNMADEMVD 108 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAI 238 MI + + + + + N+ + +A+ Sbjct: 109 MIQAMRTYEANVSSTEANKNILKKAL 134 Score = 41.2 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 I + +L + N++N +T G ++ V+FSE + + Sbjct: 5 NGLQINASGLSLERMKLDVASTNIANVNTTRTAEGGPYKKKTVEFSENLRQAQGTNKITS 64 Query: 57 SFV 59 + V Sbjct: 65 AGV 67 >gi|261856362|ref|YP_003263645.1| flagellar basal-body rod protein FlgC [Halothiobacillus neapolitanus c2] gi|261836831|gb|ACX96598.1| flagellar basal-body rod protein FlgC [Halothiobacillus neapolitanus c2] Length = 133 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 175 SGISPNIPPTPLEDLSGVTVKR--GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEK 232 SGI+ + P P G + G++ SN N + EM M+ ++ + + ++D + Sbjct: 64 SGITQSTAPNPALYEPGNPLANKDGYVYSSNVNPVEEMVNMLSASRSYQTNVQMMDTAKN 123 Query: 233 SMLEAIR 239 L ++ Sbjct: 124 LALRTLQ 130 Score = 40.0 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 11/82 (13%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISF 58 FN+ +A A RL+ A NM+N D V ++ + F +V+ + + + Sbjct: 7 FNVSSSAMSAQSLRLNATASNMANADAVATKPEDAYKAREPVFQQVM-----EQNGGVGV 61 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 SG + + G L Sbjct: 62 RVSGITQSTAPNPALYEPGNPL 83 >gi|115353120|ref|YP_774959.1| flagellar basal body rod protein FlgC [Burkholderia ambifaria AMMD] gi|170703094|ref|ZP_02893914.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria IOP40-10] gi|171321836|ref|ZP_02910737.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria MEX-5] gi|172061974|ref|YP_001809626.1| flagellar basal body rod protein FlgC [Burkholderia ambifaria MC40-6] gi|115283108|gb|ABI88625.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria AMMD] gi|170131991|gb|EDT00499.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria IOP40-10] gi|171092874|gb|EDT38126.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria MEX-5] gi|171994491|gb|ACB65410.1| flagellar basal-body rod protein FlgC [Burkholderia ambifaria MC40-6] Length = 141 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIFNVGEK---GEISQKGKVIATMGLYSVDMSQGFVR 171 V+AS D A+ P P K + G + G+ + + + V ++ Sbjct: 24 VTAS-NLANADSATGPDGKPYKAKQVVFATDPMGGARTASGQGVGGVRVTKVMDDPSPMK 82 Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 S P P D + G+++ N + + EM MI ++ + + ++ + Sbjct: 83 ------STYDPANPSADAN------GYVQMPNVDPVQEMVNMISASRSYQANVETLNTAK 130 Query: 232 KSMLEAIRNIAS 243 ML+ + I S Sbjct: 131 TLMLKTL-TIGS 141 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS-EVVGAIKNDIDQ 54 F + +A A QRL+ A N++N D+ G ++ +V F+ + +G + Q Sbjct: 5 MNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPMGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K ST + + + + + ++ P Sbjct: 65 GVGGVRVTKVMDDPS--PMKSTYDPANPSADANGY--VQMPN 102 >gi|260222465|emb|CBA32056.1| Flagellar basal-body rod protein flgC [Curvibacter putative symbiont of Hydra magnipapillata] Length = 134 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N + EM MI ++ + + +++ + +L+ ++ Sbjct: 89 GYVTQSNVNPVEEMVNMISASRSYQNNVEVMNTAKSLLLKTLQ 131 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M + FN+ +A A QRL+ VA N++N D V G+++ +V F V + Sbjct: 3 MFSIFNVSGSAVSAQSQRLNVVASNLANADAVAGPDGQGYKSRQVVFETVPMGSEASSGV 62 Query: 55 KISFV 59 K+S + Sbjct: 63 KVSSI 67 >gi|188592115|ref|YP_001796713.1| flgc: flagellar basal-body rod protein [Cupriavidus taiwanensis LMG 19424] gi|170938489|emb|CAP63476.1| FlgC: Flagellar basal-body rod protein [Cupriavidus taiwanensis LMG 19424] Length = 122 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%) Query: 142 VGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLED 201 V G+ + +V+ M G V+ + P+ P + +G++ Sbjct: 22 VSPDGQAYRAKQVVFGMAPTPGQTDIGGVQVQGVSEDPSPPRMVHNPTHPMANAQGYVVM 81 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ + + +++ + ML+ + Sbjct: 82 PNVNPVEEMVNMISASRSYQANVEVLNTAKNMMLKTLT 119 >gi|83720057|ref|YP_440799.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis E264] gi|167579486|ref|ZP_02372360.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis TXDOH] gi|167617583|ref|ZP_02386214.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis Bt4] gi|257140550|ref|ZP_05588812.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis E264] gi|83653882|gb|ABC37945.1| flagellar basal-body rod protein FlgC [Burkholderia thailandensis E264] Length = 141 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 13/98 (13%) Query: 146 GEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 G + G+ + + + V ++ P P D + G++ N + Sbjct: 57 GARTASGQGVGGVQVTKVIDDPSPMKTTYD------PSNPAADQN------GYVTMPNVD 104 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + EM MI ++ + + ++ ++ ML+ + I S Sbjct: 105 PVQEMVNMISASRSYQANVETLNTAKQLMLKTL-TIGS 141 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEV-VGAIKNDIDQ 54 F++ +A A QRL+ A N++N G ++ +V F+ +G + Q Sbjct: 5 MNIFDVAGSAMSAQSQRLNVTASNLANADSVTGPDGKPYKAKQVVFATAPMGGARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K +T + A + + + + P Sbjct: 65 GVGGVQVTKVIDDPS--PMKTTYDPSNPAADQNGY--VTMPN 102 >gi|238927420|ref|ZP_04659180.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] gi|238884702|gb|EEQ48340.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] Length = 151 Score = 55.0 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N N + EM MI ++ + + TT I+ KSM+ A I S Sbjct: 104 GYVERPNVNIVAEMVDMISASRGYEANTTTINAA-KSMVSAALRIGS 149 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 18/91 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GF-----------RTIKVKFSE 43 M + + A R+ +++N++N +T + + + F Sbjct: 3 MFLGIDAAASGLTAERLRMDVISNNIANANTTRTQGGGAYHRRYVVFQPREKGTGIGFES 62 Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + N + A + G + Sbjct: 63 FLARASNRLRPGDGVRAVSIQ-ADNTQGPLV 92 >gi|332530688|ref|ZP_08406619.1| flagellar basal body rod protein [Hylemonella gracilis ATCC 19624] gi|332039856|gb|EGI76251.1| flagellar basal body rod protein [Hylemonella gracilis ATCC 19624] Length = 101 Score = 55.0 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 1 MQTSFN-IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 M S + IG++ A + RL + A N++N +T GF+ V + Sbjct: 1 MMASLSSIGISGLQAAQLRLDSSAHNVANLNTPGFKRQTVTQQD 44 >gi|53717912|ref|YP_106898.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei K96243] gi|53724563|ref|YP_104796.1| flagellar basal body rod protein FlgC [Burkholderia mallei ATCC 23344] gi|76809289|ref|YP_331878.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei 1710b] gi|121599639|ref|YP_994289.1| flagellar basal body rod protein FlgC [Burkholderia mallei SAVP1] gi|124385719|ref|YP_001028062.1| flagellar basal body rod protein FlgC [Burkholderia mallei NCTC 10229] gi|126439110|ref|YP_001057320.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei 668] gi|126450357|ref|YP_001082869.1| flagellar basal body rod protein FlgC [Burkholderia mallei NCTC 10247] gi|126454889|ref|YP_001064562.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei 1106a] gi|134283634|ref|ZP_01770333.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 305] gi|167001534|ref|ZP_02267329.1| flagellar basal-body rod protein FlgC [Burkholderia mallei PRL-20] gi|167717658|ref|ZP_02400894.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei DM98] gi|167736701|ref|ZP_02409475.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei 14] gi|167813799|ref|ZP_02445479.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei 91] gi|167822316|ref|ZP_02453787.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei 9] gi|167843906|ref|ZP_02469414.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei B7210] gi|167892408|ref|ZP_02479810.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei 7894] gi|167900906|ref|ZP_02488111.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei NCTC 13177] gi|167909125|ref|ZP_02496216.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei 112] gi|167917162|ref|ZP_02504253.1| flagellar basal body rod protein FlgC [Burkholderia pseudomallei BCC215] gi|217424916|ref|ZP_03456412.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 576] gi|226199800|ref|ZP_03795351.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei Pakistan 9] gi|237810459|ref|YP_002894910.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei MSHR346] gi|238562527|ref|ZP_00440313.2| flagellar basal-body rod protein FlgC [Burkholderia mallei GB8 horse 4] gi|242316173|ref|ZP_04815189.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 1106b] gi|254174790|ref|ZP_04881451.1| flagellar basal-body rod protein FlgC [Burkholderia mallei ATCC 10399] gi|254182142|ref|ZP_04888739.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 1655] gi|254188072|ref|ZP_04894584.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei Pasteur 52237] gi|254197006|ref|ZP_04903430.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei S13] gi|254201894|ref|ZP_04908258.1| flagellar basal-body rod protein FlgC [Burkholderia mallei FMH] gi|254207228|ref|ZP_04913579.1| flagellar basal-body rod protein FlgC [Burkholderia mallei JHU] gi|254258642|ref|ZP_04949696.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 1710a] gi|254295812|ref|ZP_04963269.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 406e] gi|254359730|ref|ZP_04976001.1| flagellar basal-body rod protein FlgC [Burkholderia mallei 2002721280] gi|42766726|gb|AAS45446.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei] gi|52208326|emb|CAH34259.1| flagellar basal-body rod protein [Burkholderia pseudomallei K96243] gi|52427986|gb|AAU48579.1| flagellar basal-body rod protein FlgC [Burkholderia mallei ATCC 23344] gi|76578742|gb|ABA48217.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 1710b] gi|121228449|gb|ABM50967.1| flagellar basal-body rod protein FlgC [Burkholderia mallei SAVP1] gi|124293739|gb|ABN03008.1| flagellar basal-body rod protein FlgC [Burkholderia mallei NCTC 10229] gi|126218603|gb|ABN82109.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 668] gi|126228531|gb|ABN92071.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 1106a] gi|126243227|gb|ABO06320.1| flagellar basal-body rod protein FlgC [Burkholderia mallei NCTC 10247] gi|134245043|gb|EBA45138.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 305] gi|147747788|gb|EDK54864.1| flagellar basal-body rod protein FlgC [Burkholderia mallei FMH] gi|147752770|gb|EDK59836.1| flagellar basal-body rod protein FlgC [Burkholderia mallei JHU] gi|148028944|gb|EDK86876.1| flagellar basal-body rod protein FlgC [Burkholderia mallei 2002721280] gi|157805705|gb|EDO82875.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 406e] gi|157935752|gb|EDO91422.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei Pasteur 52237] gi|160695835|gb|EDP85805.1| flagellar basal-body rod protein FlgC [Burkholderia mallei ATCC 10399] gi|169653749|gb|EDS86442.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei S13] gi|184212680|gb|EDU09723.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 1655] gi|217391936|gb|EEC31962.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 576] gi|225928151|gb|EEH24187.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei Pakistan 9] gi|237504017|gb|ACQ96335.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei MSHR346] gi|238522487|gb|EEP85931.1| flagellar basal-body rod protein FlgC [Burkholderia mallei GB8 horse 4] gi|242139412|gb|EES25814.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 1106b] gi|243062736|gb|EES44922.1| flagellar basal-body rod protein FlgC [Burkholderia mallei PRL-20] gi|254217331|gb|EET06715.1| flagellar basal-body rod protein FlgC [Burkholderia pseudomallei 1710a] Length = 141 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + G+ + + + V ++ P P D + G++ N + + Sbjct: 60 TASGQGVGGVQVSKVIDDPSPMKTAYD------PSNPAADQN------GYVTMPNVDPVQ 107 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM MI ++ + + ++ ++ ML+ + I S Sbjct: 108 EMVNMISASRSYQANVETLNTAKQLMLKTL-TIGS 141 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEV-VGAIKNDIDQ 54 F++ +A A QRL+ A N++N G ++ +V F+ +G + Q Sbjct: 5 MNIFDVAGSAMSAQSQRLNVTASNLANADSVTGPDGKPYKAKQVVFATAPMGRARTASGQ 64 Query: 55 KISFVASGKEYLSKEV 70 + V K Sbjct: 65 GVGGVQVSKVIDDPSP 80 >gi|89072309|ref|ZP_01158888.1| putative flagellar hook-associated protein [Photobacterium sp. SKA34] gi|89051841|gb|EAR57293.1| putative flagellar hook-associated protein [Photobacterium sp. SKA34] Length = 144 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 23/67 (34%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NIGL A + L A N++N +T GF + S + G + + Sbjct: 1 MNMINIGLTGLNANKTALDVTAHNVANVNTPGFSRQQAMMSALAGNNILSAGSGVEVASI 60 Query: 62 GKEYLSK 68 + Sbjct: 61 RRISDQF 67 >gi|254519436|ref|ZP_05131492.1| flagellar hook-associated protein 1 [Clostridium sp. 7_2_43FAA] gi|226913185|gb|EEH98386.1| flagellar hook-associated protein 1 [Clostridium sp. 7_2_43FAA] Length = 611 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++FNI ++ + + N++N++TVG+ + K + + G Sbjct: 6 STFNIAKRGMNVQQKSIDVTSHNIANSNTVGYSRQRAKIETSRPFGGTSMGSSVQAGQLG 65 Query: 63 KEYLSKEVGSFISTGTELDFALEGD 87 + + LD+ + G+ Sbjct: 66 TGAQIRAIERVR--DNFLDYQVRGE 88 Score = 36.6 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 16/40 (40%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + EM ++ +N+ +I ++ + I + Sbjct: 570 SGVSLDEEMANLVQFQHAYNANAKIISTVDELLEVIINGL 609 >gi|325295411|ref|YP_004281925.1| flagellar basal-body rod protein FlgC [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065859|gb|ADY73866.1| flagellar basal-body rod protein FlgC [Desulfurobacterium thermolithotrophum DSM 11699] Length = 135 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 21/121 (17%) Query: 125 DMASVPIQ--IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 D P + IP + + KGEI + + + + + P Sbjct: 34 DENGNPYRRKIPIFESVLEKTAKGEIY-------RVKVKKIVEDPSPYKLKYD------P 80 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 PL D K G+++ N + + EM MI + + + T + ++ +L AI + Sbjct: 81 SNPLAD------KNGYVKLPNVDPIREMVDMISAMRTYEANLTAFNTHKGMLLNAIDILK 134 Query: 243 S 243 + Sbjct: 135 A 135 Score = 36.2 bits (83), Expect = 4.1, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 5/48 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV---G--FRTIKVKFSEVV 45 + L R+ + N++N ++V G +R F V+ Sbjct: 4 KGLEVSLTGMEVQRVRIDIHSSNLANANSVDENGNPYRRKIPIFESVL 51 >gi|121607563|ref|YP_995370.1| flagellar basal-body rod protein FlgC [Verminephrobacter eiseniae EF01-2] gi|121552203|gb|ABM56352.1| flagellar basal-body rod protein FlgC [Verminephrobacter eiseniae EF01-2] Length = 134 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 25/45 (55%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ SN N++ EM MI + + + +++ + +L+ ++ Sbjct: 87 AQGYVTHSNVNAVQEMVDMISAARSYQNNVEVMNTAKSLLLKTLQ 131 Score = 43.9 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 M + FN+ +A A QRL+ VA N++N D V ++ +V F + Sbjct: 3 MLSIFNLSGSAISAQAQRLNVVASNLANVDAVAGPDGQPYKARQVVFQTAPMGAPSAAGV 62 Query: 55 KISFVASGKE 64 ++ ++ + Sbjct: 63 RVIAISESQV 72 >gi|291539398|emb|CBL12509.1| flagellar hook-associated protein FlgK [Roseburia intestinalis XB6B4] Length = 587 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S IG+A + + L+ ++N++N DT G+ V F++ N IS SG Sbjct: 7 SMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFN-TTAAISNQQSGL 65 Query: 64 EYLSKEV 70 +V Sbjct: 66 GVTIGDV 72 >gi|240145383|ref|ZP_04743984.1| flagellar hook-associated protein FlgK [Roseburia intestinalis L1-82] gi|257202504|gb|EEV00789.1| flagellar hook-associated protein FlgK [Roseburia intestinalis L1-82] Length = 587 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S IG+A + + L+ ++N++N DT G+ V F++ N IS SG Sbjct: 7 SMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFN-TTAAISNQQSGL 65 Query: 64 EYLSKEV 70 +V Sbjct: 66 GVTIGDV 72 >gi|169831914|ref|YP_001717896.1| flagellar basal-body rod protein FlgB [Candidatus Desulforudis audaxviator MP104C] gi|169638758|gb|ACA60264.1| flagellar basal-body rod protein FlgB [Candidatus Desulforudis audaxviator MP104C] Length = 132 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A R +A N++N +T GF+ +V F + A +D + + +L+ Sbjct: 14 ALDGQAVRQRVIAHNIANLNTPGFKRSRVDFQAFMQAALDD--SAVRMKRTDPRHLAGRA 71 Query: 71 GS 72 G Sbjct: 72 GD 73 >gi|116694217|ref|YP_728428.1| flagellar basal body rod protein [Ralstonia eutropha H16] gi|113528716|emb|CAJ95063.1| flagellar basal body rod protein [Ralstonia eutropha H16] Length = 135 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 38/98 (38%) Query: 142 VGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLED 201 V G+ + +V+ M G V+ P+ P + +G++ Sbjct: 35 VSPDGQAYRAKQVVFGMAPTPGQTDIGGVQVRGVSEDPSPPRMVHNPTHPMANAQGYVVM 94 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ + + +++ + ML+ + Sbjct: 95 PNVNPVEEMVNMISASRSYQANVEVLNTAKNMMLKTLT 132 Score = 40.8 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDID 53 F++ +A A QR++ A N++N D+V +R +V F + DI Sbjct: 4 MNIFDVAGSAMAAQSQRMNVTASNLANADSVVSPDGQAYRAKQVVFGMAPTPGQTDIG 61 >gi|220927554|ref|YP_002504463.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum H10] gi|219997882|gb|ACL74483.1| flagellar hook-associated protein FlgK [Clostridium cellulolyticum H10] Length = 537 Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 1 MQTSF---NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 MQ SF NI L+ ++ L TV N+SN T G+ + S + + Sbjct: 1 MQQSFFGLNIALSGLYTAQRNLDTVGHNLSNASTPGYSRQQSIQS---ASNPLAVMDGTG 57 Query: 58 FVASGKEYLSKE 69 V +G + E Sbjct: 58 MVGTGSQVTGVE 69 Score = 39.6 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 15/41 (36%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S N EM M+ Q +N+ +I + I + Sbjct: 495 SGVNLNEEMTNMVKFQQSYNAAARMIVTMGEIYDTLINRLG 535 >gi|150388562|ref|YP_001318611.1| flagellar hook-associated protein FlgK [Alkaliphilus metalliredigens QYMF] gi|149948424|gb|ABR46952.1| flagellar hook-associated protein FlgK [Alkaliphilus metalliredigens QYMF] Length = 493 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + FN + A ++ L V N++N +T G+ +++ + + + + +G Sbjct: 6 SGFNTATSGIFASQRSLDVVGHNIANANTPGYSRQRLEQA---ASTPMSLYGGKGMLGTG 62 Query: 63 KEYLSKEV 70 + ++ + Sbjct: 63 VDTVAIKQ 70 Score = 36.2 bits (83), Expect = 4.4, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 17/42 (40%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 S + EM M+ +N+ ++ ++ + I + + Sbjct: 449 SGVSLDEEMANMVRFQHAYNASARMVTTMDEMIDVIINRMGT 490 >gi|330818587|ref|YP_004362292.1| flagellar basal-body rod protein FlgC [Burkholderia gladioli BSR3] gi|327370980|gb|AEA62336.1| flagellar basal-body rod protein FlgC [Burkholderia gladioli BSR3] Length = 141 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 13/95 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 ++ G+ + + + V ++ P P D + G++ N + + Sbjct: 60 TRSGQGVGGVQVKQVIDDPSPMKTNYD------PSNPAADAN------GYVTMPNVDPVQ 107 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM MI ++ + + ++ ++ ML+ + I S Sbjct: 108 EMVNMISASRSYQANVETLNTAKQLMLKTL-TIGS 141 Score = 41.6 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEV-VGAIKNDIDQ 54 F++ +A A QRL+ A N++N G +R +V F VG + Q Sbjct: 5 MNIFDVAGSAMSAESQRLNVTASNLANADSVTGPDGKPYRAKQVVFETQPVGNARTRSGQ 64 Query: 55 KISFVASGKEYLSKEV 70 + V + Sbjct: 65 GVGGVQVKQVIDDPSP 80 >gi|167835109|ref|ZP_02461992.1| flagellar basal body rod protein FlgC [Burkholderia thailandensis MSMB43] Length = 141 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + G+ + + + V ++ P P D + G++ N + + Sbjct: 60 TASGQGVGGVQVTKVVDDPSPMKTTYD------PSNPAADQN------GYVTMPNVDPVQ 107 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 EM MI ++ + + ++ ++ ML+ + I S Sbjct: 108 EMVNMISASRSYQANVETLNTAKQLMLKTL-TIGS 141 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 11/102 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEV-VGAIKNDIDQ 54 F++ +A A QRL+ A N++N G ++ +V F+ +G + Q Sbjct: 5 MNIFDVAGSAMSAQSQRLNVTASNLANADSVTGPDGKPYKAKQVVFATAPMGRARTASGQ 64 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V K +T + A + + + + P Sbjct: 65 GVGGVQVTKVVDDPS--PMKTTYDPSNPAADQNGY--VTMPN 102 >gi|330839540|ref|YP_004414120.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC 35185] gi|329747304|gb|AEC00661.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC 35185] Length = 137 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG 46 A R ++ N++N +T F+ V F +++ Sbjct: 17 GMGAANLRQEVISHNIANVNTPNFKKSNVVFEDLLA 52 >gi|291534844|emb|CBL07956.1| flagellar hook-associated protein FlgK [Roseburia intestinalis M50/1] Length = 589 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S IG+A + + L+ ++N++N DT G+ V F++ N IS SG Sbjct: 7 SMFIGVAGLQSSQNALNVTSNNLANLDTTGYVRQSVLFADRDYVTFN-TTAAISNQQSGL 65 Query: 64 EYLSKEV 70 +V Sbjct: 66 GVTIGDV 72 >gi|241766918|ref|ZP_04764724.1| flagellar basal-body rod protein FlgC [Acidovorax delafieldii 2AN] gi|241362622|gb|EER58470.1| flagellar basal-body rod protein FlgC [Acidovorax delafieldii 2AN] Length = 134 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV-KRGFLED 201 G G+ + +V+ D S G R ++ N P + D S + +G++ Sbjct: 36 GPDGQAYKARQVVFQTAPMGADSSAGV--RVSAISENNTPGRRIHDPSHPSADAQGYVTH 93 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SN N++ EM MI ++ + + +++ + +L+ ++ Sbjct: 94 SNVNAVDEMVNMISASRSYQNNVEVMNTAKSLLLKTLQ 131 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M + F++ +A A QRL+ VA N++N D V ++ +V F + Sbjct: 3 MFSIFSVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGADSSAGV 62 Query: 55 KISFVA 60 ++S ++ Sbjct: 63 RVSAIS 68 >gi|260886628|ref|ZP_05897891.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC 35185] gi|260863771|gb|EEX78271.1| flagellar basal-body rod protein FlgB [Selenomonas sputigena ATCC 35185] Length = 142 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG 46 A R ++ N++N +T F+ V F +++ Sbjct: 22 GMGAANLRQEVISHNIANVNTPNFKKSNVVFEDLLA 57 >gi|257457889|ref|ZP_05623048.1| flagellar basal-body rod protein FlgC [Treponema vincentii ATCC 35580] gi|257444602|gb|EEV19686.1| flagellar basal-body rod protein FlgC [Treponema vincentii ATCC 35580] Length = 151 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ + + ++ +++ A+ Sbjct: 106 GYVEYPNVNIVTEMVDLISASRSYEANAAVVQGSKEMFQRAL 147 Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 14/86 (16%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 +S NI A R ++DN++N T FR +V ++ + ID ++ Sbjct: 5 SSINIAATGMSAERLRTDVISDNIANASTTSSQEGGYFRRSRV----ILAQKNDGIDWRL 60 Query: 57 SFVASGKEYLSKEVGS-FISTGTELD 81 FV S + + VG+ TG E D Sbjct: 61 PFVPSD---MDRGVGTGVRVTGIEKD 83 >gi|170755438|ref|YP_001782346.1| flagellar hook-associated protein FlgK [Clostridium botulinum B1 str. Okra] gi|169120650|gb|ACA44486.1| flagellar hook-associated protein FlgK [Clostridium botulinum B1 str. Okra] Length = 621 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + L+T + N++N +T G+ +V+ K ++ G Sbjct: 8 LNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 67 Query: 65 Y 65 Sbjct: 68 V 68 >gi|114320063|ref|YP_741746.1| flagellar hook-associated protein FlgK [Alkalilimnicola ehrlichii MLHE-1] gi|114226457|gb|ABI56256.1| flagellar hook-associated protein FlgK [Alkalilimnicola ehrlichii MLHE-1] Length = 695 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + N G++ +A ++ L+ + N+SN +T GF +V+ S + FV Sbjct: 1 MSGTMNTGISGLMAAQRALAATSHNISNVNTEGFSRQRVEQSSRL-----PTGSGAGFVG 55 Query: 61 SGKEY 65 +G + Sbjct: 56 NGVQV 60 >gi|307748584|gb|ADN91854.1| Hypothetical protein CJM1_1678 [Campylobacter jejuni subsp. jejuni M1] Length = 88 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 160 LYSVDMSQGFVRRENSGISPNIPP---TPLEDLSGVT--VKRGFLEDSNANSMYEMGQMI 214 + SV + G + E +G +K LE SN + + ++I Sbjct: 1 MASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELI 60 Query: 215 HLTQKFNSITTLIDENEKSMLEAIR 239 + + + + + I +++ + I+ Sbjct: 61 IIQRGYQANSKTISTSDQMLQTLIQ 85 >gi|168183196|ref|ZP_02617860.1| flagellar hook-associated protein FlgK [Clostridium botulinum Bf] gi|182673575|gb|EDT85536.1| flagellar hook-associated protein FlgK [Clostridium botulinum Bf] Length = 622 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + L+T + N++N +T G+ +V+ K ++ G Sbjct: 8 LNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 67 Query: 65 Y 65 Sbjct: 68 V 68 >gi|237796175|ref|YP_002863727.1| flagellar hook-associated protein FlgK [Clostridium botulinum Ba4 str. 657] gi|229264184|gb|ACQ55217.1| flagellar hook-associated protein FlgK [Clostridium botulinum Ba4 str. 657] Length = 622 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + L+T + N++N +T G+ +V+ K ++ G Sbjct: 8 LNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 67 Query: 65 Y 65 Sbjct: 68 V 68 >gi|148380698|ref|YP_001255239.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. ATCC 3502] gi|153932743|ref|YP_001384982.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. ATCC 19397] gi|153935679|ref|YP_001388452.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. Hall] gi|226950152|ref|YP_002805243.1| flagellar hook-associated protein FlgK [Clostridium botulinum A2 str. Kyoto] gi|148290182|emb|CAL84301.1| flagellar hook-associated protein 1 [Clostridium botulinum A str. ATCC 3502] gi|152928787|gb|ABS34287.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. ATCC 19397] gi|152931593|gb|ABS37092.1| flagellar hook-associated protein FlgK [Clostridium botulinum A str. Hall] gi|226841472|gb|ACO84138.1| flagellar hook-associated protein FlgK [Clostridium botulinum A2 str. Kyoto] Length = 622 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + L+T + N++N +T G+ +V+ K ++ G Sbjct: 8 LNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 67 Query: 65 Y 65 Sbjct: 68 V 68 >gi|332799171|ref|YP_004460670.1| flagellar basal-body rod protein FlgC [Tepidanaerobacter sp. Re1] gi|332696906|gb|AEE91363.1| flagellar basal-body rod protein FlgC [Tepidanaerobacter sp. Re1] Length = 143 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 S +I + A RL T+++N++N +T G F+ +V F E Sbjct: 5 NSLDISASGLTAQRLRLDTISNNIANANTTRTEEGGPFQRERVVFQE 51 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI T+ + + T I+ + M +A+ Sbjct: 96 SGYVMLPNVNIVTEMVDMISATRSYEANVTAINSAKSMMSKAL 138 >gi|332531616|ref|ZP_08407513.1| flagellar basal-body rod protein FlgC [Hylemonella gracilis ATCC 19624] gi|332038979|gb|EGI75408.1| flagellar basal-body rod protein FlgC [Hylemonella gracilis ATCC 19624] Length = 136 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N + EM MI ++ + + +++ + +L+ ++ Sbjct: 91 GYVNQSNVNPVEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQ 133 Score = 40.8 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 M + F + +A A QRL+ VA N++N D V ++ +V F + Sbjct: 3 MFSIFGVSGSAISAQAQRLNVVASNLANADAVAGPDGQFYKARQVVFETLPFDEATPGAA 62 Query: 55 KISFVASGKE 64 + A + Sbjct: 63 GVKINAVTES 72 >gi|255099395|ref|ZP_05328372.1| putative flagellar hook-associated protein [Clostridium difficile QCD-63q42] gi|255305252|ref|ZP_05349424.1| putative flagellar hook-associated protein [Clostridium difficile ATCC 43255] Length = 436 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N + A ++ + T++ N+SN DT G+ + +F+ + I+ G Sbjct: 8 LNTANSGMNAHQKAIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIARGQLGTG 67 Query: 65 YLSKEV 70 +V Sbjct: 68 VHVTDV 73 Score = 40.8 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 17/40 (42%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + EM ++I + + + + ++ + + I I Sbjct: 396 SGVSLDEEMTELIKIQRSYQASAKVMSTAVQLLDVVINGI 435 >gi|222530141|ref|YP_002574023.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor bescii DSM 6725] gi|222456988|gb|ACM61250.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor bescii DSM 6725] Length = 145 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M + NI +A A R+ +A N++N +T G +R V F E + N + Q Sbjct: 1 MFDAINISSSALSAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEERKLSFANILSQ 60 Query: 55 KISFVASG 62 KI + Sbjct: 61 KIGEGTTS 68 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + + EM MI ++ + + T ++ KSM+ I Sbjct: 106 NVDIVTEMVNMIEASRSYEANVTALNIT-KSMITRTFEIG 144 >gi|149194904|ref|ZP_01871998.1| flagellar hook-associated protein [Caminibacter mediatlanticus TB-2] gi|149135063|gb|EDM23545.1| flagellar hook-associated protein [Caminibacter mediatlanticus TB-2] Length = 717 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISF 58 + +S + L+ A + + T ++N+SN + + FS + + +I DI ++ Sbjct: 3 ISSSLSTALSGLNAHQTAIQTTSNNISNASNPDYVRERAVFSTLPPINSIPGDIGTGVNI 62 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 + + + T +L Sbjct: 63 SKIYRITDTFVFNQMVKTSQDL 84 >gi|146296277|ref|YP_001180048.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409853|gb|ABP66857.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 137 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIST 76 +R +++N++N DT G++ + F + A ND + + + K ++ E S ST Sbjct: 20 KRNEVISNNIANADTPGYKAKDLNFKAFLQAYLND-QNNLELITTDKRHIKAEQSSGTST 78 Query: 77 GTELDFALE 85 D A+E Sbjct: 79 K---DSAIE 84 >gi|317052365|ref|YP_004113481.1| flagellar basal-body rod protein FlgC [Desulfurispirillum indicum S5] gi|316947449|gb|ADU66925.1| flagellar basal-body rod protein FlgC [Desulfurispirillum indicum S5] Length = 151 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI ++ + + T+I+ +K EA+ Sbjct: 111 NINVVEEMTDMITASRSYEANITMIETIKKMANEAL 146 Score = 44.3 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 I +A A QR++ ++ N++N T G ++ + F Sbjct: 5 DGLKISSSALFAQRQRMNVISSNLANAHTTRAEDGTYYKRKDLVFK 50 >gi|54307275|ref|YP_128295.1| flagellar hook-associated protein [Photobacterium profundum SS9] gi|46911695|emb|CAG18493.1| Hypothetical flagellar hook-associated protein [Photobacterium profundum SS9] Length = 468 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 + NIGL+ A LS + N++N T GF +V F V A +S V Sbjct: 1 MSLINIGLSGLNAANAGLSVTSHNIANAMTPGFSRQRVGFGAQVSAGSQGAGVGVSSV 58 >gi|319649569|ref|ZP_08003725.1| flagellar basal-body rod protein C [Bacillus sp. 2_A_57_CT2] gi|317398731|gb|EFV79413.1| flagellar basal-body rod protein C [Bacillus sp. 2_A_57_CT2] Length = 150 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N + + EM +I T+ + + T+ + ++ M++A+ Sbjct: 105 GYVEMPNVDPLREMTDLISATRSYEANVTVFNASKGMMMKAL 146 Score = 39.3 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M S N +A A R+ ++ NM+N D+ Sbjct: 3 MFHSMNNTASALTAQRLRMDVISSNMANADST 34 >gi|167568105|ref|ZP_02361021.1| flagellar basal body rod protein FlgC [Burkholderia oklahomensis EO147] gi|167574223|ref|ZP_02367097.1| flagellar basal body rod protein FlgC [Burkholderia oklahomensis C6786] Length = 141 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 12/91 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + G+ + + + V ++ P P D + G++ N + + Sbjct: 60 TASGQGVGGVQVTKVIDDPSPMKTAYD------PSNPAADQN------GYVTMPNVDPVQ 107 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 EM MI ++ + + ++ ++ ML+ + Sbjct: 108 EMVNMISASRSYQANVETLNTAKQLMLKTLT 138 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEV-VGAIKNDIDQ 54 F++ +A A QRL+ A N++N G ++ +V F+ +G + Q Sbjct: 5 MNIFDVAGSAMSAQSQRLNVTASNLANADSVTGPDGKPYKAKQVVFATAPMGRARTASGQ 64 Query: 55 KISFVASGKEYLSKEV 70 + V K Sbjct: 65 GVGGVQVTKVIDDPSP 80 >gi|238916198|ref|YP_002929715.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC 27750] gi|238871558|gb|ACR71268.1| flagellar hook-associated protein 1 FlgK [Eubacterium eligens ATCC 27750] Length = 646 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 IG + L+T A N+SN +T G+ +V FS+ N D+ S Sbjct: 5 MAGLFIGTTGLKTAQTALNTTAHNLSNINTSGYTRQQVTFSDTQYVRVNTSDKVSS 60 >gi|302872573|ref|YP_003841209.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor obsidiansis OB47] gi|302575432|gb|ADL43223.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor obsidiansis OB47] Length = 145 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M + NI +A A R+ +A N++N +T G +R V F E + + + Q Sbjct: 1 MFDAINISSSALTAQRVRMDVIAQNIANANTTRTESGQPYRRKIVVFEERKQSFADILTQ 60 Query: 55 KISFVASG 62 KI A+ Sbjct: 61 KIGEAANS 68 Score = 46.2 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + + EM MI ++ + + T ++ KSM+ I Sbjct: 106 NVDIVTEMVNMIEASRSYEANVTALNIT-KSMITRTFEIG 144 >gi|296186751|ref|ZP_06855153.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans P7] gi|296048788|gb|EFG88220.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans P7] Length = 463 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 23/66 (34%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NI + A ++ + + N++N +T G+ + + ++ + G Sbjct: 8 LNISKSGMFAQQRCIDVTSHNIANANTDGYSRQRAELQTTKPFPMPSVNNAVGPGQLGTG 67 Query: 65 YLSKEV 70 + Sbjct: 68 VEVTTI 73 >gi|83589620|ref|YP_429629.1| flagellar basal-body rod protein FlgB [Moorella thermoacetica ATCC 39073] gi|83572534|gb|ABC19086.1| flagellar basal-body rod protein FlgB [Moorella thermoacetica ATCC 39073] Length = 132 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 11/83 (13%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI-----------KNDIDQKISFV 59 A R T+A N++N +T GF+ +V F + + N S + Sbjct: 13 ALDTATLRQRTIAHNIANVNTPGFKRYQVSFEDQLSRALGLEPGLPLYRTNPYHLPPSGL 72 Query: 60 ASGKEYLSKEVGSFISTGTELDF 82 + + G +D Sbjct: 73 ELAPQVSRDTSTTMRQDGNNVDI 95 >gi|258511369|ref|YP_003184803.1| flagellar basal-body rod protein FlgC [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478095|gb|ACV58414.1| flagellar basal-body rod protein FlgC [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 144 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVG--AIKNDID 53 TS NI + A + L+ +A+N++N +T G +R V F+ V + + + Sbjct: 4 NTSMNISASGLAANQLWLNVIANNIANVNTTRTPQGGPYRAEIVNFAPVENDVSFQTALG 63 Query: 54 QKISFVASGKEYLSKEV 70 Q + + G E S Sbjct: 64 QAVQGIGGGVEVTSITQ 80 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E SN N +M +I T+ + + T D ++ + A+ Sbjct: 99 GYVETSNVNLTTQMVDLIQATRAYQANATAFDAAKQMAVTAL 140 >gi|94987189|ref|YP_595122.1| flagellar hook-associated protein [Lawsonia intracellularis PHE/MN1-00] gi|94731438|emb|CAJ54801.1| Flagellar hook-associated protein [Lawsonia intracellularis PHE/MN1-00] Length = 705 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + T F IG +A + L+ +N++N +T G+ V+F + G ++Q + Sbjct: 3 INTLFGIGKSAIAGNQTALNVTGNNIANVNTQGYSRQSVRFEDRYG-----LNQTPGMLG 57 Query: 61 SGK 63 G Sbjct: 58 QGV 60 Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 14/35 (40%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N EM Q+I + + LI ++ + + Sbjct: 667 VNLDEEMTQLIKFQHSYTAAAKLITTADQMLQTLL 701 >gi|237653585|ref|YP_002889899.1| flagellar basal-body rod protein FlgC [Thauera sp. MZ1T] gi|237624832|gb|ACR01522.1| flagellar basal-body rod protein FlgC [Thauera sp. MZ1T] Length = 134 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N N + EM MI ++ + + ++ + ++ Sbjct: 89 GYVEMPNVNVVEEMVNMISASRSYQNNAEVMSTARTLLQRTLQ 131 Score = 39.3 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M F I +A A RL+ A N++N D+V G +R +V F+ A + Sbjct: 3 MLNVFQIAGSALNAQSLRLNATASNLANADSVISEDGQPYRAKQVVFAARPVAGPAAVGV 62 Query: 55 KISFV 59 +++ V Sbjct: 63 QVTQV 67 >gi|312792645|ref|YP_004025568.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179785|gb|ADQ39955.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor kristjanssonii 177R1B] Length = 147 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M + NI +A A R+ +A N++N +T G +R V F E + + + Q Sbjct: 3 MFDAINISSSALAAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEERKQSFADILTQ 62 Query: 55 KISFVASGK 63 KI S Sbjct: 63 KIGQAQSSS 71 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + + EM MI ++ + + T ++ KSM+ I Sbjct: 108 NVDIVTEMVNMIEASRSYEANVTALNIT-KSMITRTFEIG 146 >gi|255523748|ref|ZP_05390714.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans P7] gi|255512617|gb|EET88891.1| flagellar hook-associated protein FlgK [Clostridium carboxidivorans P7] Length = 649 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 23/66 (34%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NI + A ++ + + N++N +T G+ + + ++ + G Sbjct: 8 LNISKSGMFAQQRCIDVTSHNIANANTDGYSRQRAELQTTKPFPMPSVNNAVGPGQLGTG 67 Query: 65 YLSKEV 70 + Sbjct: 68 VEVTTI 73 >gi|300854137|ref|YP_003779121.1| Flagellar hook-associated protein [Clostridium ljungdahlii DSM 13528] gi|300434252|gb|ADK14019.1| Flagellar hook-associated protein [Clostridium ljungdahlii DSM 13528] Length = 638 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 21/66 (31%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN + A + ++ + N++N +T G+ + +D G Sbjct: 8 FNTAKSGLFAQQTAINVTSHNIANANTDGYSRQRADMETTTPYTLPSVDGAAGAGQLGTG 67 Query: 65 YLSKEV 70 + Sbjct: 68 VTVDSI 73 Score = 40.8 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +S + EM +I + + +I ++ + I + Sbjct: 596 NSGVSIDEEMTNLIQFQHCYQANAKMISTVDELLDVVINQL 636 >gi|313895777|ref|ZP_07829331.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon 137 str. F0430] gi|320529388|ref|ZP_08030476.1| flagellar basal-body rod protein FlgB [Selenomonas artemidis F0399] gi|312975202|gb|EFR40663.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon 137 str. F0430] gi|320138354|gb|EFW30248.1| flagellar basal-body rod protein FlgB [Selenomonas artemidis F0399] Length = 140 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 25/44 (56%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG 46 ++ +IG A A R +++N++N +T FR V+F +++ Sbjct: 9 STLDIGSRALAAASLRHEVLSNNIANVNTPNFRRSHVRFEDLLQ 52 >gi|168698712|ref|ZP_02730989.1| Flagellar basal body rod protein [Gemmata obscuriglobus UQM 2246] Length = 144 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Query: 10 AAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQK 55 A R+ +A+N++N +T G +R V F E++GA Sbjct: 15 TGMSAERLRMEVIANNIANANTTRSANGGPYRRQDVVFEELLGAAAGPFGGP 66 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 18/47 (38%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 GF+ N EM ++ T+ + + + +A+ + S Sbjct: 98 GFVRMPNVQLPIEMVNLLTATRAYEANLRAAQTFRQMNEQALVLLRS 144 >gi|312621566|ref|YP_004023179.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor kronotskyensis 2002] gi|312202033|gb|ADQ45360.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor kronotskyensis 2002] Length = 145 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M + NI +A A R+ +A N++N +T G +R V F E + + + Q Sbjct: 1 MFDAINISSSALSAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEESKQSFADILSQ 60 Query: 55 KIS 57 KI Sbjct: 61 KIG 63 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + + EM MI ++ + + T ++ KSM+ I Sbjct: 106 NVDIVTEMVNMIEASRSYEANVTALNIT-KSMITRTFEIG 144 >gi|118581824|ref|YP_903074.1| flagellar basal-body rod protein FlgC [Pelobacter propionicus DSM 2379] gi|118504534|gb|ABL01017.1| flagellar basal-body rod protein FlgC [Pelobacter propionicus DSM 2379] Length = 145 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N + EM MI ++ + + T + + L+A+ Sbjct: 99 QGYVAMPNVNVIEEMADMIGASRTYEANVTAVQTAKSMALKAL 141 Score = 40.8 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 ++ N+ +A A R++ ++ N++N + G ++ F+ Sbjct: 5 SAMNVSASALSAERTRMNLISSNLANANATRTPEGGPYKRKDAVFA 50 >gi|312876494|ref|ZP_07736477.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor lactoaceticus 6A] gi|311796705|gb|EFR13051.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor lactoaceticus 6A] Length = 147 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M + NI +A A R+ +A N++N +T G +R V F E + + ++Q Sbjct: 3 MFDAINISSSALAAQRVRMDVIAQNIANANTTRTENGQPYRRKVVVFEERKQSFSDILNQ 62 Query: 55 KISFVASGK 63 KI + Sbjct: 63 KIGQAQASS 71 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + + EM MI ++ + + T ++ KSM+ I Sbjct: 108 NVDIVTEMVNMIEASRSYEANVTALNIT-KSMITRTFEIG 146 >gi|325473784|gb|EGC76972.1| FlgC protein [Treponema denticola F0402] Length = 151 Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ + + +++ + A+ Sbjct: 106 GYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRAL 147 Score = 43.5 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 TS NI R +++N++N ++ G F+ +V +VG K+ ID + Sbjct: 5 TSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRV----IVGQKKSGIDWQT 60 Query: 57 SFVA 60 F Sbjct: 61 PFTP 64 >gi|309388815|gb|ADO76695.1| flagellar basal-body rod protein FlgC [Halanaerobium praevalens DSM 2228] Length = 143 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N + M EM MI ++ + + T I + A+ Sbjct: 98 GYVELPNVSVMTEMVNMIDASRAYEANTQAISNYKSMANSALN 140 Score = 42.0 bits (98), Expect = 0.083, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 16/32 (50%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M +I + A R+ T++ N++N +T Sbjct: 1 MFKGIDISASGLTAQRLRMDTISSNIANAETT 32 >gi|39995516|ref|NP_951467.1| flagellar basal-body rod protein FlgC [Geobacter sulfurreducens PCA] gi|39982279|gb|AAR33740.1| flagellar basal-body rod protein FlgC [Geobacter sulfurreducens PCA] gi|298504516|gb|ADI83239.1| flagellar basal body rod protein FlgC [Geobacter sulfurreducens KN400] Length = 146 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++ N N + EM MI T+ + + T + + L+ + I S Sbjct: 100 GYVALPNVNVVEEMADMIAATRAYEANVTAMQAAKNMALKTL-EIGS 145 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS--EVVGAIKNDIDQ 54 ++ + +A A R++ ++ N++N ++ G ++ F+ +V ++ +D+ Sbjct: 5 SAMQVSSSALSAERTRMNLISANLANANSTRTAEGGPYKRKDAVFAATQVGEGFRSALDR 64 Query: 55 KISFVASGKEYL 66 G + Sbjct: 65 MRKNAPQGVQVT 76 >gi|312126817|ref|YP_003991691.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor hydrothermalis 108] gi|311776836|gb|ADQ06322.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor hydrothermalis 108] Length = 147 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M + NI +A A R+ +A N++N +T G +R V F E + + Q Sbjct: 3 MFDAINISSSALTAQRVRMDVIAQNIANANTTKTENGQPYRRKVVVFEERRQSFAEILSQ 62 Query: 55 KISFVASGK 63 KI + Sbjct: 63 KIGQAQASS 71 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + + EM MI ++ + + T ++ KSM+ I Sbjct: 108 NVDIVTEMVNMIEASRSYEANVTALNIT-KSMITRTFEIG 146 >gi|254973892|ref|ZP_05270364.1| putative flagellar hook-associated protein [Clostridium difficile QCD-66c26] gi|255091277|ref|ZP_05320755.1| putative flagellar hook-associated protein [Clostridium difficile CIP 107932] gi|255312936|ref|ZP_05354519.1| putative flagellar hook-associated protein [Clostridium difficile QCD-76w55] gi|255515695|ref|ZP_05383371.1| putative flagellar hook-associated protein [Clostridium difficile QCD-97b34] gi|255648789|ref|ZP_05395691.1| putative flagellar hook-associated protein [Clostridium difficile QCD-37x79] gi|260682009|ref|YP_003213294.1| putative flagellar hook-associated protein [Clostridium difficile CD196] gi|260685607|ref|YP_003216740.1| putative flagellar hook-associated protein [Clostridium difficile R20291] gi|260208172|emb|CBA60493.1| putative flagellar hook-associated protein [Clostridium difficile CD196] gi|260211623|emb|CBE01861.1| putative flagellar hook-associated protein [Clostridium difficile R20291] Length = 436 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N + A ++ + T++ N+SN DT G+ + +F+ + I+ G Sbjct: 8 LNTANSGMNAHQKAIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIARGQLGTG 67 Query: 65 YLSKEV 70 +V Sbjct: 68 VHVTDV 73 Score = 40.4 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 17/40 (42%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + EM ++I + + + + ++ + + I I Sbjct: 396 SGVSLDEEMTELIKIQRSYQASAKVMSTAVQLLDVVINGI 435 >gi|42526722|ref|NP_971820.1| flagellar basal body rod protein FlgC [Treponema denticola ATCC 35405] gi|41817037|gb|AAS11731.1| flagellar basal-body rod protein FlgC [Treponema denticola ATCC 35405] Length = 151 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ + + +++ + A+ Sbjct: 106 GYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRAL 147 Score = 43.9 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 TS NI R +++N++N ++ G F+ +V +VG K+ ID + Sbjct: 5 TSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRV----IVGQKKSGIDWQT 60 Query: 57 SFVASGKE 64 F E Sbjct: 61 PFTPQNVE 68 >gi|239628952|ref|ZP_04671983.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519098|gb|EEQ58964.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 118 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 25/49 (51%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 A+ + + N++N +T GF+ KV+F +V+ + +++ V Sbjct: 15 GMDAMWLKQQVSSHNIANVETPGFKAKKVEFKDVLRETEQGVERIAKPV 63 >gi|94266975|ref|ZP_01290624.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93452330|gb|EAT02961.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 118 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + L+ AL+Q+ S A N++N +T G++ +KV +E + + Sbjct: 1 MVSGIQAALSGLQALQQKNSATAHNVANVNTDGYKKVKVSLAETTPPGGVEARAEKIDTP 60 Query: 61 SGKEYLSKEVGSFISTGTELDFA 83 + G + + +D A Sbjct: 61 GPQVSEQTADGPELVEKSNVDLA 83 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN + EM M+ + F + ++ ++ + + Sbjct: 75 VEKSNVDLAEEMPNMMLSRRYFQANLKVVQTEDERLGNLLN 115 >gi|319764537|ref|YP_004128474.1| flagellar basal-body rod protein flgc [Alicycliphilus denitrificans BC] gi|330826753|ref|YP_004390056.1| flagellar basal-body rod protein FlgC [Alicycliphilus denitrificans K601] gi|317119098|gb|ADV01587.1| flagellar basal-body rod protein FlgC [Alicycliphilus denitrificans BC] gi|329312125|gb|AEB86540.1| flagellar basal-body rod protein FlgC [Alicycliphilus denitrificans K601] Length = 134 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFV-----RRENSGISPNIPPTPLEDLSGVTVKRG 197 G G+ + +V+ D S G G + P P+ D G Sbjct: 36 GPDGQAYKARQVVFQTAPMGPDSSAGVRVSTIQESGVPGRRVHDPSNPMADAE------G 89 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ SN N++ EM MI ++ + + +++ + +L+ ++ Sbjct: 90 YVTHSNVNAVEEMVNMISASRSYQNNVEVMNTAKSLLLKTLQ 131 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M + FN+ +A A QRL+ VA N++N D V ++ +V F + Sbjct: 3 MFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGPDSSAGV 62 Query: 55 KISFVA 60 ++S + Sbjct: 63 RVSTIQ 68 >gi|149912830|ref|ZP_01901364.1| flagellar basal-body rod protein FlgC [Roseobacter sp. AzwK-3b] gi|149813236|gb|EDM73062.1| flagellar basal-body rod protein FlgC [Roseobacter sp. AzwK-3b] Length = 130 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ + A QRL V++N++N DT G+R V F + + V +G+ Sbjct: 7 SLSVSASGLKAQAQRLRHVSENIANADTPGYRRKTVSFEARAAGMS-----GVHHVETGR 61 Query: 64 EYLSKE 69 L + Sbjct: 62 VRLDRS 67 Score = 37.3 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 4/33 (12%), Positives = 12/33 (36%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 SN + E+ + + + + D+ + Sbjct: 88 SSNVQLVIEIADAREAQRSYEANLKMFDQARQM 120 >gi|226313072|ref|YP_002772966.1| flagellar basal-body rod protein FlgC [Brevibacillus brevis NBRC 100599] gi|226096020|dbj|BAH44462.1| flagellar basal-body rod protein FlgC [Brevibacillus brevis NBRC 100599] Length = 152 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+L N + M EM MI ++ + + T ++ ++ ML+A+ Sbjct: 108 GYLLMPNVDPMKEMVDMISASRSYEANVTALNASKAMMLKAL 149 Score = 36.6 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 14/78 (17%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE---------VVGAIKNDID 53 N +A A RL T++ N++N + + F + +V Sbjct: 5 QGINTSASALTANRLRLDTISSNIANAEVT-----RANFVDGAWQPYRRKMVELSPQTNG 59 Query: 54 QKISFVASGKEYLSKEVG 71 +F+ + +S G Sbjct: 60 TFDNFLQAAVGTVSGSQG 77 >gi|187778686|ref|ZP_02995159.1| hypothetical protein CLOSPO_02281 [Clostridium sporogenes ATCC 15579] gi|187772311|gb|EDU36113.1| hypothetical protein CLOSPO_02281 [Clostridium sporogenes ATCC 15579] Length = 624 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + ++T + N++N +T G+ +V+ K ++ G Sbjct: 11 LNIGKSGMFAQQGAINTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 70 Query: 65 Y 65 Sbjct: 71 V 71 >gi|153837083|ref|ZP_01989750.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ3810] gi|149749671|gb|EDM60416.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ3810] Length = 457 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T G+ + + V N + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|224418356|ref|ZP_03656362.1| hypothetical protein HcanM9_03665 [Helicobacter canadensis MIT 98-5491] Length = 36 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRT 36 M S G++ + + ++N++N +T GFR Sbjct: 1 MVGSLYSGISGIKTHQTGIDVTSNNIANVNTTGFRA 36 >gi|28900128|ref|NP_799783.1| putative flagellar hook-associated protein [Vibrio parahaemolyticus RIMD 2210633] gi|260365778|ref|ZP_05778274.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus K5030] gi|260880700|ref|ZP_05893055.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AN-5034] gi|260897694|ref|ZP_05906190.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus Peru-466] gi|28808411|dbj|BAC61616.1| putative flagellar hook-associated protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086274|gb|EFO35969.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus Peru-466] gi|308092694|gb|EFO42389.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AN-5034] gi|308114946|gb|EFO52486.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus K5030] Length = 457 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T G+ + + V N + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|322807049|emb|CBZ04623.1| flagellar hook-associated protein FlgK [Clostridium botulinum H04402 065] Length = 630 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + ++T + N++N +T G+ +V+ K ++ G Sbjct: 8 LNIGKSGMFAQQGAINTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 67 Query: 65 Y 65 Sbjct: 68 V 68 >gi|15615023|ref|NP_243326.1| flagellar basal body rod protein FlgC [Bacillus halodurans C-125] gi|10175080|dbj|BAB06179.1| flagellar basal-body rod protein [Bacillus halodurans C-125] Length = 152 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N + + EM ++ T+ + + T ++ ++ +++A+ Sbjct: 107 GYVEMPNVDPLREMVDLMSATRSYEANVTTLNASKNILMKAL 148 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 15/29 (51%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV 32 NI +A + R+ ++ NM+N +T Sbjct: 6 GMNISGSALTSQRLRMDVISANMANAETT 34 >gi|89069822|ref|ZP_01157157.1| flagellar basal-body rod protein FlgC [Oceanicola granulosus HTCC2516] gi|89044623|gb|EAR50739.1| flagellar basal-body rod protein FlgC [Oceanicola granulosus HTCC2516] Length = 128 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 + ++ + A RL V++N++N+DT G+R V F + GA ++ Sbjct: 6 QALDVVASGLRAQSARLRHVSENIANSDTPGYRRKTVTFRDAFGATAGEVAVGP 59 Score = 42.3 bits (99), Expect = 0.064, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 14/98 (14%) Query: 147 EISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-PLEDLSGVTVKRGFLEDSNAN 205 ++ + AT G +V G VR ++S + P PL D + G E SN + Sbjct: 41 TVTFRDAFGATAGEVAV----GPVRLDDSALERIFDPAHPLAD------ESGHFEGSNVD 90 Query: 206 SMYEMGQMIHLTQKFNSITTL---IDENEKSMLEAIRN 240 + E+ + + + + + + S+L+ +R Sbjct: 91 LLIEIADAREAQRSYEANLKMFEQVRQMSTSLLDLLRR 128 >gi|186477695|ref|YP_001859165.1| flagellar basal body rod protein FlgC [Burkholderia phymatum STM815] gi|184194154|gb|ACC72119.1| flagellar basal-body rod protein FlgC [Burkholderia phymatum STM815] Length = 141 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 12/94 (12%) Query: 146 GEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 G + G+ + + + V ++ P P D + G+++ N + Sbjct: 57 GARTGSGQQVGGVQVTGVIDDPTPMKT------SYEPGNPAADAN------GYVQLPNVD 104 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + EM MI ++ + + ++ ++ ML+ + Sbjct: 105 PVQEMVNMISASRSYQANVETLNTAKQLMLKTLT 138 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 19/82 (23%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 FN+ +A A QRL+ A N++N T G ++ +V F+ Sbjct: 5 MNIFNVAGSAMSAQSQRLNVTASNLANADSTTGPDGKPYKAKQVVFA------------- 51 Query: 56 ISFVASGKEYLSKEVGSFISTG 77 ++ + + ++VG TG Sbjct: 52 VNPIGGARTGSGQQVGGVQVTG 73 >gi|91224193|ref|ZP_01259456.1| putative flagellar hook-associated protein [Vibrio alginolyticus 12G01] gi|91191104|gb|EAS77370.1| putative flagellar hook-associated protein [Vibrio alginolyticus 12G01] Length = 457 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +TVG+ + + V N + + + Sbjct: 1 MNLVNIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|260899395|ref|ZP_05907790.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ4037] gi|308109296|gb|EFO46836.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus AQ4037] Length = 457 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T G+ + + V N + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVANVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|304438470|ref|ZP_07398410.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368553|gb|EFM22238.1| flagellar basal-body rod protein FlgC [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 151 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G++E N N + EM MI ++ + + TT I+ KSM+ A I Sbjct: 104 GYVERPNVNIVAEMVDMISASRGYEANTTTINAA-KSMVNAALRIG 148 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 18/91 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GF-----------RTIKVKFSE 43 M + + A R+ +++N++N +T + + + F Sbjct: 3 MFLGIDTAASGLTAERLRMDVISNNIANANTTRTQGGGAYHRRYVVFQPREKGHGIGFES 62 Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + N + A G G + Sbjct: 63 FLARASNRMRPGDGVRAVGIR-TDNTQGPLV 92 >gi|183220163|ref|YP_001838159.1| flagellar basal body rod protein FlgC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910283|ref|YP_001961838.1| flagellar basal body rod protein FlgC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774959|gb|ABZ93260.1| Endoflagellar proximal basal body rod protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778585|gb|ABZ96883.1| Flagellar basal-body rod protein FlgC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 153 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNT----DTVG---FRTIKV 39 M S NI A R+ +++N++N+ +T G FR +V Sbjct: 3 MFDSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRV 48 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 23/41 (56%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 G++E N N + EM MI ++ + + LI+ ++ M +A Sbjct: 107 GYVELPNINIVTEMTDMISASRSYEANVQLINGSKAMMNKA 147 >gi|311992325|gb|ADQ26736.1| proximal rod protein [Aeromonas hydrophila] Length = 138 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V E + P P+ D GF+ N N + EM MI+ ++ + + + Sbjct: 68 KGIVESEAPLLKEYNPNHPMADKD------GFIFKPNVNMVEEMADMINASRSYQTNVQV 121 Query: 227 IDENEKSMLEAIR 239 D +K + + + Sbjct: 122 ADSAKKMLQQTLN 134 Score = 35.8 bits (82), Expect = 5.8, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I +A A RL+TVA NM+N D+V + + F+ + +D Sbjct: 6 FDIAGSAMSAQSVRLNTVASNMANADSVSSSVEKTYHARRPIFAAQLDQAMSDKQASAGV 65 Query: 59 VASG 62 G Sbjct: 66 EVKG 69 >gi|144245|gb|AAA23042.1| hook protein [Caulobacter vibrioides] Length = 52 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 28/47 (59%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA 47 + ++ G++ +A L+ ++DN++N +TVGF+ FS +V + Sbjct: 3 INSAMLAGVSGLIANSSALAAISDNIANVNTVGFKRSTSNFSTLVTS 49 >gi|262396029|ref|YP_003287882.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] gi|262339623|gb|ACY53417.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] Length = 457 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +TVG+ + + V N + + + Sbjct: 1 MNLVNIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|254227989|ref|ZP_04921419.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] gi|151939485|gb|EDN58313.1| flagellar hook-associated protein FlgK [Vibrio sp. Ex25] Length = 457 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +TVG+ + + V N + + + Sbjct: 1 MNLVNIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|126697802|ref|YP_001086699.1| putative flagellar hook-associated protein [Clostridium difficile 630] gi|115249239|emb|CAJ67052.1| Flagellar hook-associated protein FlgK (or HAP1) [Clostridium difficile] Length = 436 Score = 53.5 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N + A ++ + T++ N+SN DT G+ + +F+ + I G Sbjct: 8 LNTANSGMNAHQKSIQTISHNISNLDTDGYSRQRTEFATNSPMYMPSLSNSIGRGQLGTG 67 Query: 65 YLSKEV 70 +V Sbjct: 68 VHVTDV 73 Score = 39.6 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 17/40 (42%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + EM +++ + + + + ++ + + I I Sbjct: 396 SGVSLDEEMTELMKVQRSYQASAKVMSTAVQLLDVVINGI 435 >gi|261856354|ref|YP_003263637.1| flagellar hook-associated protein FlgK [Halothiobacillus neapolitanus c2] gi|261836823|gb|ACX96590.1| flagellar hook-associated protein FlgK [Halothiobacillus neapolitanus c2] Length = 549 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M + + LA++Q L+T +N++N +T G+ +V + + +N I + Sbjct: 1 MPDLMSNSVTGLLAMQQALATTGNNIANANTPGYSRERVNLASMQAQYQNGSYIGSGVQV 60 Query: 59 VASGK---EYLSKEVGSFISTGTEL 80 + + ++++ ++ + +T + L Sbjct: 61 ASVTRVYDQFITSQLNAATTTNSSL 85 >gi|225375212|ref|ZP_03752433.1| hypothetical protein ROSEINA2194_00837 [Roseburia inulinivorans DSM 16841] gi|225212879|gb|EEG95233.1| hypothetical protein ROSEINA2194_00837 [Roseburia inulinivorans DSM 16841] Length = 594 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV 39 S IG + + L+T ++N++N +T G+ +V Sbjct: 7 SLYIGASGLQNSQNALNTTSNNLANVNTKGYVRQQV 42 >gi|329898292|ref|ZP_08272375.1| Flagellar basal-body rod protein FlgB [gamma proteobacterium IMCC3088] gi|328920857|gb|EGG28300.1| Flagellar basal-body rod protein FlgB [gamma proteobacterium IMCC3088] Length = 124 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + F + A + QRL +A N++N DT GF+ V F +V+ A + Sbjct: 1 MNSIFGVHEQALVLKSQRLQVLAKNIANADTPGFKARDVDFKQVLAAQAGFGSLVTTHKR 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGD 87 K LS + G + T + L+G+ Sbjct: 61 HLKTALSNQDG-LVYT-NPYNAGLDGN 85 >gi|327441057|dbj|BAK17422.1| flagellar basal body rod protein [Solibacillus silvestris StLB046] Length = 154 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ SN + + EM +I ++ + + T + N+ + +A+ Sbjct: 108 GYVQMSNVDVLKEMVDLISASRSYEANITAFNANKNMLTKAL 149 Score = 43.1 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 14/29 (48%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S N +A R+ ++ N++N DT Sbjct: 6 SMNTTASALTTQRLRMDVISSNIANVDTT 34 >gi|153940778|ref|YP_001392018.1| flagellar hook-associated protein FlgK [Clostridium botulinum F str. Langeland] gi|152936674|gb|ABS42172.1| flagellar hook-associated protein FlgK [Clostridium botulinum F str. Langeland] gi|295320033|gb|ADG00411.1| flagellar hook-associated protein FlgK [Clostridium botulinum F str. 230613] Length = 621 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + L+T + N++N T G+ +V+ K ++ G Sbjct: 8 LNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 67 Query: 65 Y 65 Sbjct: 68 V 68 >gi|317129211|ref|YP_004095493.1| flagellar basal-body rod protein FlgC [Bacillus cellulosilyticus DSM 2522] gi|315474159|gb|ADU30762.1| flagellar basal-body rod protein FlgC [Bacillus cellulosilyticus DSM 2522] Length = 148 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N + + EM ++ T+ + + T +D ++ +L+A+ Sbjct: 103 GYVELPNVDPLKEMIDLMSATRSYEANVTTLDAHKNMLLKAL 144 Score = 42.0 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV 32 N +A A R+ V+ NM+N DT Sbjct: 6 GINTSASALTAQRLRMDVVSSNMANADTT 34 >gi|294140182|ref|YP_003556160.1| flagellar basal-body rod protein FlgC [Shewanella violacea DSS12] gi|293326651|dbj|BAJ01382.1| flagellar basal-body rod protein FlgC [Shewanella violacea DSS12] Length = 138 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDAPLLKEYSPNHPMADGD------GFIYKPNVNVMEEMANMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAIR 239 + + + + +R Sbjct: 123 AEAAKSMLQQTLR 135 Score = 40.8 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 9/94 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N D+V +R F + Sbjct: 5 NIFNVAGSGMSAQSIRLNTTASNIANADSVSSSVDKTYRARHPIFEAEMAKASYQQQSSP 64 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 S G + + +GD + Sbjct: 65 SVKVKGIVESDA---PLLKEYSPNHPMADGDGFI 95 >gi|220932527|ref|YP_002509435.1| flagellar basal-body rod protein FlgC [Halothermothrix orenii H 168] gi|219993837|gb|ACL70440.1| flagellar basal-body rod protein FlgC [Halothermothrix orenii H 168] Length = 145 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 M S NI + A R+ +ADN++N +T G +R F E Sbjct: 1 MLDSLNISASGLTAQRLRMDIIADNIANVNTTRTEDGGPYRRKLPVFRE 49 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N EM MI ++ + + T ++ + L+A++ Sbjct: 99 GYVAMPNVNITTEMVDMISASRAYEANVTALNTAKNMALKALQ 141 >gi|168180854|ref|ZP_02615518.1| flagellar hook-associated protein FlgK [Clostridium botulinum NCTC 2916] gi|182668369|gb|EDT80348.1| flagellar hook-associated protein FlgK [Clostridium botulinum NCTC 2916] Length = 621 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + L+T + N++N T G+ +V+ K ++ G Sbjct: 8 LNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 67 Query: 65 Y 65 Sbjct: 68 V 68 >gi|23099008|ref|NP_692474.1| flagellar basal body rod protein FlgC [Oceanobacillus iheyensis HTE831] gi|22777236|dbj|BAC13509.1| flagellar basal-body rod protein [Oceanobacillus iheyensis HTE831] Length = 151 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 25/43 (58%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++E N + + EM ++ T+ + + T + ++ +++A+ Sbjct: 105 QGYVEMPNVDPLKEMVDLMSATRSYEANITAFNASKGMLMKAL 147 Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S N + A R+ V+ N++N + Sbjct: 5 NSMNTSASGLTAQRLRMDIVSSNVANAQST 34 >gi|260767929|ref|ZP_05876863.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP 102972] gi|260615959|gb|EEX41144.1| flagellar hook-associated protein FlgK [Vibrio furnissii CIP 102972] gi|315179632|gb|ADT86546.1| flagellar hook-associated protein [Vibrio furnissii NCTC 11218] Length = 457 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T G+ + + V GA +++ + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVANINTPGYSRQQALMASVGGAKYDNLSAGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|145298489|ref|YP_001141330.1| flagellar basal body rod protein FlgC [Aeromonas salmonicida subsp. salmonicida A449] gi|142851261|gb|ABO89582.1| flagellar basal body rod protein FlgC [Aeromonas salmonicida subsp. salmonicida A449] Length = 139 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D G++ N N + EM MI+ ++ + + + Sbjct: 69 KGIVESKAPLLKEYNPNHPMADDD------GYIFKPNVNMVEEMADMINASRSYQTNVQV 122 Query: 227 IDENEKSMLEAIR 239 D +K + + + Sbjct: 123 ADSAKKMLQQTLN 135 Score = 37.3 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I +A A RL+TVA NM+N D+V + + F+ + +D + Sbjct: 7 FDIAGSAMSAQSVRLNTVASNMANADSVSSSVEKTYHARRPIFAAQLDQAMSDKQSSVGV 66 Query: 59 VASG 62 G Sbjct: 67 EVKG 70 >gi|170760196|ref|YP_001788056.1| flagellar hook-associated protein FlgK [Clostridium botulinum A3 str. Loch Maree] gi|169407185|gb|ACA55596.1| flagellar hook-associated protein FlgK [Clostridium botulinum A3 str. Loch Maree] Length = 621 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + L+T + N++N T G+ +V+ K ++ G Sbjct: 8 LNIGKSGMFAQQGALNTTSHNIANASTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTG 67 Query: 65 Y 65 Sbjct: 68 V 68 >gi|117621411|ref|YP_857345.1| flagellar basal body rod protein FlgC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562818|gb|ABK39766.1| flagellar basal-body rod protein FlgC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 139 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V E + P P+ D GF+ N N + EM MI+ ++ + + + Sbjct: 69 KGIVESEAPLLKEYNPNHPMADKD------GFIFKPNVNMVEEMADMINASRSYQTNVQV 122 Query: 227 IDENEKSMLEAIR 239 D +K + + + Sbjct: 123 ADSAKKMLQQTLN 135 Score = 35.4 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I +A A RL+TVA NM+N D+V + + F+ + +D Sbjct: 7 FDIAGSAMSAQSVRLNTVASNMANADSVSSSVEKTYHARRPIFAAQLDQAMSDKQASAGV 66 Query: 59 VASG 62 G Sbjct: 67 EVKG 70 >gi|2494522|sp|P70911|FLGC_BORHE RecName: Full=Flagellar basal-body rod protein flgC gi|1621621|gb|AAB51474.1| flagellar rod protein FLgC [Borrelia hermsii] Length = 59 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS 42 +S N A RL +A+N++N +T +R +V F+ Sbjct: 5 SSINTASTGLTAQRLRLDVIANNIANVETTRTSEGGSYRRQRVIFA 50 >gi|255264378|ref|ZP_05343720.1| flagellar basal-body rod protein FlgC [Thalassiobium sp. R2A62] gi|255106713|gb|EET49387.1| flagellar basal-body rod protein FlgC [Thalassiobium sp. R2A62] Length = 130 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S I + A RL ++N++N DT G+R F +V + Q V +G Sbjct: 6 NSLAISASGMAAQTDRLRFTSENIANADTPGYRRKTTSFEAIV-----EQGQSTGAVTTG 60 Query: 63 KEYLSKE 69 L K Sbjct: 61 PMVLDKT 67 >gi|74101664|gb|AAZ99754.1| FlgKL [Aeromonas hydrophila] Length = 437 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG + A + L+ A N++N +T+G+ + + G + D + + Sbjct: 2 LNIGFSGLNAAQIALNVTAQNIANVNTIGYSRQEAMMGSLSGFGRLDNGMGVEVTGVRRI 61 Query: 65 YLSK 68 Sbjct: 62 TDDY 65 >gi|167630287|ref|YP_001680786.1| flagellar basal-body rod protein flgc, putative [Heliobacterium modesticaldum Ice1] gi|167593027|gb|ABZ84775.1| flagellar basal-body rod protein flgc, putative [Heliobacterium modesticaldum Ice1] Length = 159 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N++ EM MI T+ + + T I+ + ++A+ Sbjct: 113 GYVRMPNVNTVTEMVDMISATRAYEANVTAINAAKSMAMKAL 154 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 6/31 (19%), Positives = 16/31 (51%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 +S + + A R+ +++N++N +T Sbjct: 4 LSSIDTSASGLTAQRFRMDIISNNLANVNTT 34 >gi|292669734|ref|ZP_06603160.1| flagellar basal-body rod protein FlgC [Selenomonas noxia ATCC 43541] gi|292648531|gb|EFF66503.1| flagellar basal-body rod protein FlgC [Selenomonas noxia ATCC 43541] Length = 151 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N N + EM MI ++ + + T I+ + + A+R Sbjct: 104 GYVERPNVNIVAEMVDMISASRGYEANATTINAAKSMVTAALR 146 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 16/90 (17%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFS----------EV 44 M + + A R+ +++N++N +T + V F E Sbjct: 3 MFLGIDAAASGLTAERLRMDVISNNIANANTTRAQGGGAYHRRYVVFQPREKGNGIGFES 62 Query: 45 VGAIKNDIDQKISFVASGKEYLSKEVGSFI 74 A +D + V + + G+ + Sbjct: 63 FLARASDRLRPGDGVRAVSIETDRSQGTLV 92 >gi|323341389|ref|ZP_08081633.1| flagellar basal-body rod protein FlgB [Lactobacillus ruminis ATCC 25644] gi|323091266|gb|EFZ33894.1| flagellar basal-body rod protein FlgB [Lactobacillus ruminis ATCC 25644] Length = 121 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 6/79 (7%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------QKISFVASGK 63 A + R +++N++N +T ++ +V F + + ++ + + Sbjct: 9 TAMDVSQTRSELISNNIANVNTPNYKAKRVVFESQLSQAMDSLNLTETHKNHMQTGGTSG 68 Query: 64 EYLSKEVGSFISTGTELDF 82 Y++ F G +D Sbjct: 69 PYITSRNTGFQKNGNNVDV 87 >gi|292669735|ref|ZP_06603161.1| flagellar basal-body rod protein FlgB [Selenomonas noxia ATCC 43541] gi|292648532|gb|EFF66504.1| flagellar basal-body rod protein FlgB [Selenomonas noxia ATCC 43541] Length = 140 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA 47 IG A A R +++N++N +T FR V+F +++ Sbjct: 13 IGSRAMAAASLRHEVLSNNIANVNTPYFRRSHVRFEDLLKQ 53 >gi|302037602|ref|YP_003797924.1| flagellar basal-body rod protein FlgC [Candidatus Nitrospira defluvii] gi|300605666|emb|CBK41999.1| Flagellar basal-body rod protein FlgC [Candidatus Nitrospira defluvii] Length = 149 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 GF+ N N M EM MI ++ + + I+ ++M I Sbjct: 104 GFVTMPNVNVMEEMVNMIGASRAYEANVQAINAT-RTMWNRALEIG 148 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT-----DTVG-FRTIKVKFSEVVGAIKNDIDQKI 56 S + ++A A RL+ +A N++N T G +R V F + K Sbjct: 5 DSLAVSVSALDAHRHRLNVIASNLANAQSTKTSTGGPYRRRDVVFQAAPVSPTFQKAFKQ 64 Query: 57 SFVASGKEYLS 67 G++ L Sbjct: 65 VTSGPGRQALD 75 >gi|206895941|ref|YP_002246669.1| flagellar hook-associated protein FlgK [Coprothermobacter proteolyticus DSM 5265] gi|206738558|gb|ACI17636.1| flagellar hook-associated protein FlgK [Coprothermobacter proteolyticus DSM 5265] Length = 540 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 17/42 (40%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS 42 M S I + A L + N++N +T G+ + F Sbjct: 1 MIWSLEIAKRSLQAQMLALDVTSHNIANVNTPGYSRQEAVFR 42 >gi|238028851|ref|YP_002913082.1| flagellar basal body rod protein FlgC [Burkholderia glumae BGR1] gi|237878045|gb|ACR30378.1| Flagellar basal-body rod protein FlgC [Burkholderia glumae BGR1] Length = 141 Score = 53.1 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 35/94 (37%), Gaps = 12/94 (12%) Query: 146 GEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNAN 205 G ++ G+ + + + V ++ +P G++ N + Sbjct: 57 GARTRSGQGVGGVQVKQVIDDPSPMKTSYDPSNPTADAN------------GYVTLPNVD 104 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + EM MI ++ + + ++ ++ ML+ + Sbjct: 105 PVQEMVNMISASRSYQANVETLNTAKQLMLKTLT 138 Score = 42.7 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEV-VGAIKNDIDQ 54 F++ +A A QRL+ A N++N G +R +V F +G + Q Sbjct: 5 MNIFDVAGSAMSAESQRLNVTASNLANADSVTGPDGKPYRAKQVVFETQPLGGARTRSGQ 64 Query: 55 KISFVASGKEYLSKEV 70 + V + Sbjct: 65 GVGGVQVKQVIDDPSP 80 >gi|219670161|ref|YP_002460596.1| flagellar basal-body rod protein FlgC [Desulfitobacterium hafniense DCB-2] gi|219540421|gb|ACL22160.1| flagellar basal-body rod protein FlgC [Desulfitobacterium hafniense DCB-2] Length = 176 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + G + + ++ R E + SP+ T + + G++ N N + Sbjct: 87 TTSGATGNGVEVQAIAEDTLPFRLEYNPDSPDAAQTTEDGIPA-----GYVRMPNVNIVT 141 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 EM MI ++ + + T ++ ++ M +A+ Sbjct: 142 EMVDMISASRAYEANVTALNASKAMMSKAL 171 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 16/29 (55%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S +I + A RL +++N++N +T Sbjct: 6 SMDISASGLTAQRLRLDVISNNIANINTT 34 >gi|154250382|ref|YP_001411207.1| flagellar basal-body rod protein FlgC [Fervidobacterium nodosum Rt17-B1] gi|154154318|gb|ABS61550.1| flagellar basal-body rod protein FlgC [Fervidobacterium nodosum Rt17-B1] Length = 138 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G+++ N N + EM MI+ + + + T I+ K+M+ A I Sbjct: 93 GYVKLPNVNIVREMVDMINAQRAYEANATAINTT-KAMINAALQIG 137 Score = 44.3 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 NI A R+ ++ N++N++T G +R F EV+ IK + + Sbjct: 6 NIMNISATGLSAQRFRIEVISTNIANSETTRTENGGPYRRKVPVFQEVLRNIKGNQENGG 65 Query: 57 SFVAS 61 V S Sbjct: 66 VMVKS 70 >gi|260437431|ref|ZP_05791247.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM 2876] gi|292810063|gb|EFF69268.1| flagellar hook-associated protein FlgK [Butyrivibrio crossotus DSM 2876] Length = 579 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 +GL+ L+T A+N++N +T G+ +V + Sbjct: 3 MAGLYVGLSGLQTSSNSLNTTANNLANVNTSGYVRQQVVNGD 44 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E+ MI Q +N+ + I+ + + I N+ Sbjct: 543 EELSNMIKFQQAYNASSRFINVIDDMIQTLINNLG 577 >gi|330445346|ref|ZP_08308998.1| flagellar basal-body rod protein FlgC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489537|dbj|GAA03495.1| flagellar basal-body rod protein FlgC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 138 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 25/45 (55%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +GF+ N N M EM MI ++ + + + D +++ +++ ++ Sbjct: 91 AQGFIYKPNVNVMEEMANMISASRSYQNNVQVADASKQMLMKTLQ 135 Score = 36.9 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N ++V ++ F+ + + + + + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYKARHPIFAAALESASYNREDSV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVQVKG 70 >gi|152990371|ref|YP_001356093.1| flagellar basal-body rod protein FlgC [Nitratiruptor sp. SB155-2] gi|151422232|dbj|BAF69736.1| flagellar basal-body rod protein FlgC [Nitratiruptor sp. SB155-2] Length = 136 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P PL D + G+++ N + + EM MI + + + T + ++ +L+ I Sbjct: 80 DPNNPLADEN------GYVQLPNVDPLREMVDMISAMRTYEANLTAFNTHKDMLLKTI 131 Score = 36.6 bits (84), Expect = 3.3, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDT---VG--FRTIKVKFSEVVGAIKNDID 53 + R+ VA NM+N ++ G +R F E++ +N I Sbjct: 11 TGLSTQKYRMDIVASNMANANSIDDNGVPYRRKIPIFQEILDKEQNRIP 59 >gi|2105146|gb|AAB57897.1| FlgC [Treponema denticola] Length = 151 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ + + +++ + A+ Sbjct: 106 GYVEYPNVNIVTEMVDLISASRAYEANLAVVNGAKDMFQRAL 147 Score = 42.7 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 TS NI R +++N++N ++ G F+ +V +VG K+ ID + Sbjct: 5 TSINIAATGMGVERLRTDVISNNIANASSLETQEGGPFKRSRV----IVGQKKSGIDWQT 60 Query: 57 SFVASGKE 64 F E Sbjct: 61 PFTPQNVE 68 >gi|188586015|ref|YP_001917560.1| flagellar basal-body rod protein FlgC [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350702|gb|ACB84972.1| flagellar basal-body rod protein FlgC [Natranaerobius thermophilus JW/NM-WN-LF] Length = 146 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + EM MI ++ + + T ID + + Sbjct: 101 GYVQKPNVEIVKEMTDMITASRAYEANATAIDNAKSMASNTL 142 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 M +F+I + A R+ +++N++N +T G +R F Sbjct: 1 MFDTFDISGSGLTAERLRMDVISNNIANANTTRTEDGEPYRRQMPVFE 48 >gi|121533766|ref|ZP_01665593.1| flagellar basal-body rod protein FlgB [Thermosinus carboxydivorans Nor1] gi|121307757|gb|EAX48672.1| flagellar basal-body rod protein FlgB [Thermosinus carboxydivorans Nor1] Length = 164 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 20/86 (23%) Query: 21 TVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 +++N++N +T GF+ +V F E + N SG + Sbjct: 57 VISNNIANVNTPGFKRSEVHFEEQLKQALN--------AKSGLSRTHQRH---------- 98 Query: 81 DFALEGDAW-FALESPRGIILTRDGR 105 A +GD + + + DG Sbjct: 99 -IAAKGDDFSVEVITVNNTAYRADGN 123 >gi|89895737|ref|YP_519224.1| hypothetical protein DSY2991 [Desulfitobacterium hafniense Y51] gi|89335185|dbj|BAE84780.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 176 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 + G + + ++ R E + SP+ T + + G++ N N + Sbjct: 87 TTLGTTGNGVEVQAIAEDTLPFRLEYNPDSPDAAQTTEDGIPA-----GYVRMPNVNIVT 141 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 EM MI ++ + + T ++ ++ M +A+ Sbjct: 142 EMVDMISASRAYEANVTALNASKAMMTKAL 171 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 14/89 (15%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDT--VG----------FRTIKVKFSE--VVGAIK 49 S +I + A RL +++N++N +T G ++ V F + Sbjct: 6 SMDISASGLTAQRLRLDVISNNIANINTTRTGQLTEGGNQIPYQRQVVVFKARGTESSFA 65 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGT 78 ++Q + + L + + +TG Sbjct: 66 ETLNQALQGRSVSTTALLQGQTTLGTTGN 94 >gi|226939376|ref|YP_002794449.1| FlgC1 [Laribacter hongkongensis HLHK9] gi|226714302|gb|ACO73440.1| FlgC1 [Laribacter hongkongensis HLHK9] Length = 137 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI ++ + + +++ ++ + + + Sbjct: 91 GYVTMPNINPVEEMTDMISASRAYQTNVEMMNTTKQLLQKTL 132 Score = 38.9 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTD----TVG--FRTIKVKFSEVVGAIKNDIDQK 55 +I +A A +RL+ VA N++N D + G ++ ++ F+ + + K Sbjct: 4 NRVLDIAGSALTAQSKRLNVVASNIANVDSAVASNGEPYKARRIVFTPIPVSPAEPKVAK 63 Query: 56 ISFVA 60 ++ A Sbjct: 64 VAVTA 68 >gi|163750572|ref|ZP_02157810.1| flagellar basal-body rod protein FlgC [Shewanella benthica KT99] gi|161329727|gb|EDQ00716.1| flagellar basal-body rod protein FlgC [Shewanella benthica KT99] Length = 139 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDAPLLKEYSPNHPMADGD------GFIYKPNVNVMEEMANMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAIR 239 + + + + +R Sbjct: 123 AEAAKSMLQQTLR 135 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 9/94 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N D+V +R F+ + Sbjct: 5 NIFNVAGSGMSAQSIRLNTTASNIANADSVSSSVDKTYRARHPIFAAEMLKASYQQQSSP 64 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 S V G + + +GD + Sbjct: 65 SVVVKGIVESDA---PLLKEYSPNHPMADGDGFI 95 >gi|254476330|ref|ZP_05089716.1| flagellar basal-body rod protein FlgC [Ruegeria sp. R11] gi|214030573|gb|EEB71408.1| flagellar basal-body rod protein FlgC [Ruegeria sp. R11] Length = 130 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S +I +A A RL V++N+SN DT G+R V F V D+ + V+ G Sbjct: 6 KSLSISASALQAQSTRLRHVSENISNADTPGYRRKTVPFEAV-----RDLSADVEKVSVG 60 Query: 63 KEYLSKE 69 L + Sbjct: 61 PVRLDRS 67 Score = 35.8 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 6/43 (13%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLID---ENEKSMLEAIRN 240 SN + M E+ + + + + + + S+++ +R Sbjct: 88 GSNVDLMIEIADAREAQRSYEANLKMFEQGRQMSSSLMDLLRR 130 >gi|121596115|ref|YP_988011.1| flagellar basal-body rod protein FlgC [Acidovorax sp. JS42] gi|222112270|ref|YP_002554534.1| flagellar basal-body rod protein flgc [Acidovorax ebreus TPSY] gi|120608195|gb|ABM43935.1| flagellar basal-body rod protein FlgC [Acidovorax sp. JS42] gi|221731714|gb|ACM34534.1| flagellar basal-body rod protein FlgC [Acidovorax ebreus TPSY] Length = 134 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 11/102 (10%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFV-----RRENSGISPNIPPTPLEDLSGVTVKRG 197 G G+ + +V+ + + G + G + P P+ D G Sbjct: 36 GPDGQAYKARQVVFQTAPMGPESAAGVRVSSIQESDQPGRRVHDPANPMADAE------G 89 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ SN N++ EM MI ++ + + +++ + +L+ ++ Sbjct: 90 YVTHSNVNAVEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQ 131 Score = 45.0 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M + FN+ +A A QRL+ VA N++N D V ++ +V F ++ Sbjct: 3 MFSIFNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGPESAAGV 62 Query: 55 KISFVASGKE 64 ++S + + Sbjct: 63 RVSSIQESDQ 72 >gi|269965650|ref|ZP_06179763.1| putative flagellar hook-associated protein [Vibrio alginolyticus 40B] gi|269829718|gb|EEZ83954.1| putative flagellar hook-associated protein [Vibrio alginolyticus 40B] Length = 107 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +TVG+ + + V N + + + Sbjct: 1 MNLVNIALSGLGANRVALDVTAQNVANVNTVGYSRQQALMASVDDGKANRLSPGLGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|257866375|ref|ZP_05646028.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus EC30] gi|257873109|ref|ZP_05652762.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus EC10] gi|257875988|ref|ZP_05655641.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus EC20] gi|257800333|gb|EEV29361.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus EC30] gi|257807273|gb|EEV36095.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus EC10] gi|257810154|gb|EEV38974.1| flagellar basal-body rod protein FlgB [Enterococcus casseliflavus EC20] Length = 120 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 11/118 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE----VVGAIKNDIDQKI 56 M ++++ A QR ++ N++N +T G++ ++ F + + D + Sbjct: 1 MLDTYDLLKTAMNVSAQRAELISSNIANVNTDGYKAKRIVFESELKQALASSGTDAATEA 60 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSL 114 S + S G +D +E ++ G+ + +G L Sbjct: 61 SVSQVKPKITENATTSIKDNGNNVDLEVE----MLDQAANGLYYS---ALTAQVNGRL 111 >gi|288553067|ref|YP_003425002.1| flagellar basal body rod protein FlgC [Bacillus pseudofirmus OF4] gi|288544227|gb|ADC48110.1| flagellar basal body rod protein FlgC [Bacillus pseudofirmus OF4] Length = 151 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N + + EM ++ T+ + + T ++ + +++A+ Sbjct: 106 GYVEMPNVDPLREMVDLMTATRSYEANVTSLNATKNMLMKAL 147 Score = 40.4 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 15/30 (50%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 + FN +A R+ ++ NM+N +T Sbjct: 5 SGFNASASALTTQRLRMDVISSNMANAETT 34 >gi|149927796|ref|ZP_01916047.1| flagellar basal-body rod protein FlgC [Limnobacter sp. MED105] gi|149823418|gb|EDM82649.1| flagellar basal-body rod protein FlgC [Limnobacter sp. MED105] Length = 140 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N++ EM M+ ++ + + +++ ++ ML+ + Sbjct: 94 GYVYMPNVNAVEEMVDMLAASRSYQTNAEVMNTAKQLMLKTLN 136 Score = 40.8 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVG 46 SF + A A RL+TVA N++N DT ++ KV F V+ Sbjct: 5 NSFKLAGGAMQAQTTRLNTVASNLANVDTAAGDPNSVYQARKVVFEAVLQ 54 >gi|71282480|ref|YP_268228.1| flagellar hook-associated protein [Colwellia psychrerythraea 34H] gi|71148220|gb|AAZ28693.1| flagellar hook-associated protein [Colwellia psychrerythraea 34H] Length = 665 Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 1 MQTSFNI-GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 M S G++ LA +Q+L+T N+SN +T G+ + + Sbjct: 1 MSVSLYQSGMSGLLAAQQQLATTGHNISNVNTDGYNRQRAE 41 >gi|125972984|ref|YP_001036894.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum ATCC 27405] gi|256004781|ref|ZP_05429756.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM 2360] gi|281417195|ref|ZP_06248215.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum JW20] gi|125713209|gb|ABN51701.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum ATCC 27405] gi|255991231|gb|EEU01338.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM 2360] gi|281408597|gb|EFB38855.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum JW20] gi|316940780|gb|ADU74814.1| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM 1313] Length = 147 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM MI T+ + + T I+ + ++A+ Sbjct: 102 GYVLMPNVDVITEMVNMISATRAYEANITAINTTKGLAMKAL 143 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 TS +I +A A R+ T++ N++N +T G +R V F E Sbjct: 5 TSLDISASALTAQRLRMDTISQNIANANTTRTENGQPYRRKTVLFEE 51 >gi|56695104|ref|YP_165451.1| flagellar basal body rod protein FlgC [Ruegeria pomeroyi DSS-3] gi|56676841|gb|AAV93507.1| flagellar basal-body rod protein FlgC [Ruegeria pomeroyi DSS-3] Length = 135 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S ++ +A A RL V++N+SN DT G+R V F ++ D + V +G Sbjct: 11 KSLSVTASALRAQATRLRHVSENISNADTPGYRRKTVPFE-----VERGRDDGVERVTTG 65 Query: 63 KEYLSKEV 70 + L + Sbjct: 66 RVKLDRRQ 73 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS---MLEAIRN 240 G + SN + M E+ + + + L D+ + ++E +R Sbjct: 89 GHYQGSNVDLMIEIADAREAQRSYEANLKLFDQARQMSASLMELLRK 135 >gi|289679028|ref|ZP_06499918.1| flagellar hook protein FlgE [Pseudomonas syringae pv. syringae FF5] Length = 159 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +VI L S QG + + + P G + LE+SN + Sbjct: 66 QVIGQTSLTSFANVQGLAQAGGTNWRETFASGVPVSGAPQSGTLGYITGQ-ALEESNVDL 124 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 125 TMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 157 >gi|167626153|ref|YP_001676447.1| flagellar basal-body rod protein FlgC [Shewanella halifaxensis HAW-EB4] gi|167356175|gb|ABZ78788.1| flagellar basal-body rod protein FlgC [Shewanella halifaxensis HAW-EB4] Length = 139 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +G++ SN N++ EM M+ ++ F + +++ +SM + + + + Sbjct: 92 QGYVAYSNVNTVEEMADMMAASRSFETNVEIMNRA-RSMQQGLLQLGA 138 Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 16/84 (19%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISF 58 + I A A RL+TVA N++N FR +K FS + + Sbjct: 7 YQIAGAGMNAQTIRLNTVASNLANAGAAAESPDEAFRALKPVFSTIYKQTQEG------- 59 Query: 59 VASGKEYLSKEVGSFISTGTELDF 82 EV + + + LD Sbjct: 60 ---QVAGAHVEVSAIVQSDAPLDL 80 >gi|291520179|emb|CBK75400.1| Flagellar hook-associated protein [Butyrivibrio fibrisolvens 16/4] Length = 199 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 1 MQTSF---NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 M SF +G + + L+T A+N+SN +T G+ +V + + Sbjct: 1 MANSFGSLYVGASGLQSASHGLNTTANNLSNINTEGYVREQVVYEDRNYQKIGTAAISTQ 60 Query: 58 FVASGKEY 65 + G + Sbjct: 61 YRGLGVQV 68 >gi|212640402|ref|YP_002316922.1| flagellar hook-associated protein FlgK [Anoxybacillus flavithermus WK1] gi|212561882|gb|ACJ34937.1| Flagellar hook-associated protein [Anoxybacillus flavithermus WK1] Length = 513 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 3/65 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A +Q L N++N +T G+ +V F K V G+ E Sbjct: 14 GMTAQQQALYVTGHNIANANTPGYSRQRVNFE---QTPPYPFASKNRPVMPGQMGTGVEG 70 Query: 71 GSFIS 75 G+ Sbjct: 71 GTVQR 75 Score = 42.0 bits (98), Expect = 0.076, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 19/41 (46%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S+ + EM M+ +N+ +I ++ + + I N+ Sbjct: 469 SSVSLDEEMMNMMKFQHAYNASARMITMIDQMLDKIINNMG 509 >gi|110677659|ref|YP_680666.1| flagellar basal body rod protein FlgC [Roseobacter denitrificans OCh 114] gi|163733139|ref|ZP_02140583.1| flagellar basal-body rod protein FlgC [Roseobacter litoralis Och 149] gi|109453775|gb|ABG29980.1| flagellar basal-body rod protein FlgC [Roseobacter denitrificans OCh 114] gi|161393674|gb|EDQ17999.1| flagellar basal-body rod protein FlgC [Roseobacter litoralis Och 149] Length = 129 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S ++ + A RL +++N+SN DT G+R V F G Q +S V + Sbjct: 6 KSLDVTTSGLKAQATRLRHLSENISNADTPGYRRKLVSFETAFG------GQGVSTVETS 59 Query: 63 KEYLSKE 69 + L + Sbjct: 60 RVRLDQS 66 Score = 39.3 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 15/92 (16%) Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 G+ ++T+ V + Q + R P P+ D + G+ + SN + + E+ Sbjct: 50 GQGVSTVETSRVRLDQSTLERVYD------PSHPMAD------ESGYFDGSNVDLLIELS 97 Query: 212 QMIHLTQKFNSITTLIDEN---EKSMLEAIRN 240 + + + + ++ S++E +R Sbjct: 98 DAREAQRSYEANLKVFEQTRKMSSSLMELLRK 129 >gi|120554030|ref|YP_958381.1| flagellar basal body rod protein FlgB [Marinobacter aquaeolei VT8] gi|120323879|gb|ABM18194.1| flagellar basal-body rod protein FlgB [Marinobacter aquaeolei VT8] Length = 132 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A A +R +A+N++N DT G++ V F ++ ++ + + Sbjct: 15 ALQARVKRAEVLANNLANADTPGYKARDVDFQAMMQKAQDSMTGFGMTTTHSGHMDTSSP 74 Query: 71 GS 72 G+ Sbjct: 75 GA 76 >gi|126734103|ref|ZP_01749850.1| flagellar basal-body rod protein FlgC [Roseobacter sp. CCS2] gi|126716969|gb|EBA13833.1| flagellar basal-body rod protein FlgC [Roseobacter sp. CCS2] Length = 130 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + ++ + A RL V++N++NTDT G+R + F E+V + V +G Sbjct: 6 DAISVATSGMKAQASRLRHVSENIANTDTPGYRRKAITFEELVTQ-----GRTTGAVETG 60 Query: 63 KEYLSKE 69 L + Sbjct: 61 PLRLDQT 67 Score = 39.6 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 SN N + E+ + + + + D+ + M A+ ++ Sbjct: 88 GSNVNLLIEIADAREAQRSYEANLKMFDQV-RQMSSALNDL 127 >gi|86139479|ref|ZP_01058048.1| flagellar basal-body rod protein FlgC [Roseobacter sp. MED193] gi|85823982|gb|EAQ44188.1| flagellar basal-body rod protein FlgC [Roseobacter sp. MED193] Length = 130 Score = 52.7 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S ++ + A RL V++N+SN DT G+R V F D++ + V +G Sbjct: 6 NSLSVTASGLKAQATRLRHVSENISNADTPGYRRKSVPFE-----AARDLENDVERVKTG 60 Query: 63 KEYLSKE 69 + L + Sbjct: 61 RVVLDRS 67 Score = 39.3 bits (91), Expect = 0.52, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN---EKSMLEAIRN 240 G E SN + M E+ + +++ + ++ S+++ +R Sbjct: 83 SGHYEGSNVDLMIEIADAREAQRSYDANLKMFEQTRGMSASLMDLLRK 130 >gi|303240291|ref|ZP_07326810.1| flagellar basal-body rod protein FlgB [Acetivibrio cellulolyticus CD2] gi|302592201|gb|EFL61930.1| flagellar basal-body rod protein FlgB [Acetivibrio cellulolyticus CD2] Length = 137 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 6/83 (7%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN------DIDQKISFVASGKE 64 + A R +A N++N DT G++ V F E + + +A G Sbjct: 15 SLDATATRNEVIAQNIANVDTPGYKRKTVSFEEQLSDAISKNSSFKGRRTDPRHIAIGGS 74 Query: 65 YLSKEVGSFISTGTELDFALEGD 87 + + + LD L+G+ Sbjct: 75 SADEVKINVSEDKSSLDMRLDGN 97 >gi|149927804|ref|ZP_01916055.1| Flagellar hook-associated protein [Limnobacter sp. MED105] gi|149823426|gb|EDM82657.1| Flagellar hook-associated protein [Limnobacter sp. MED105] Length = 576 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 1 MQTSFN-IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M S I L+ A LST + N++N++TVGF +V + + I ++ Sbjct: 1 MSNSVYGIALSGLNAARAGLSTTSHNIANSNTVGFNRQQV-----IQQSRPSTGSDIGYI 55 Query: 60 ASGKEYLSKE 69 G + S + Sbjct: 56 GQGVDIASVQ 65 >gi|114562340|ref|YP_749853.1| flagellar basal body rod protein FlgC [Shewanella frigidimarina NCIMB 400] gi|114333633|gb|ABI71015.1| flagellar basal-body rod protein FlgC [Shewanella frigidimarina NCIMB 400] Length = 138 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDKPLLKEYSPDHPMADGD------GFIYKPNVNVMEEMADMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAIR 239 D + + + +R Sbjct: 123 ADATKSMLQQTLR 135 Score = 40.0 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 9/94 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N D+V +R F + + + Sbjct: 5 NIFNVSGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPVFEAEMLKANSQQNSSP 64 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 G K + + +GD + Sbjct: 65 GVTVKGIVESDK---PLLKEYSPDHPMADGDGFI 95 >gi|319944137|ref|ZP_08018415.1| flagellar basal-body rod protein FlgC [Lautropia mirabilis ATCC 51599] gi|319742631|gb|EFV95040.1| flagellar basal-body rod protein FlgC [Lautropia mirabilis ATCC 51599] Length = 149 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 6/69 (8%) Query: 170 VRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 + G P P + G + SN N + EM MI ++ + + +++ Sbjct: 83 IEDPTPGKQTYDPKNPAANAEGYVMH------SNVNVIEEMVNMISASRSYQNNVEMMNT 136 Query: 230 NEKSMLEAI 238 ++ L+ + Sbjct: 137 AQQLALKTL 145 Score = 42.0 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 1 MQTSFNI---GLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVV-----G 46 M + NI +A A QRL+TVA N++N DTV ++ +V F + Sbjct: 1 MSSLMNILPLAGSALSAQSQRLNTVASNLANADTVAGPDGSVYKARQVVFKPAMVEARQA 60 Query: 47 AIKNDIDQKISFVASGKEYLS 67 A + + + G + Sbjct: 61 AGARQWSTRGASASMGVRVVD 81 >gi|312962289|ref|ZP_07776780.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens WH6] gi|311283216|gb|EFQ61806.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens WH6] Length = 678 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + NIG++ A + LS +++N++N +T G+ + ++ + Sbjct: 1 MSLLNIGMSGLNAAQGSLSVLSNNIANVNTPGYSRQQTT-----QNAGASNPYGGVYIGT 55 Query: 62 GKEYLS 67 G Sbjct: 56 GTTLAD 61 >gi|92114100|ref|YP_574028.1| flagellar basal-body rod protein FlgC [Chromohalobacter salexigens DSM 3043] gi|91797190|gb|ABE59329.1| flagellar basal-body rod protein FlgC [Chromohalobacter salexigens DSM 3043] Length = 135 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM MI ++ + + +++ ++ M + + Sbjct: 89 GYVAMPNVDPVDEMVDMIAASRSYQANVEVMNTSKSLMQQTL 130 >gi|89902475|ref|YP_524946.1| flagellar basal-body rod protein FlgC [Rhodoferax ferrireducens T118] gi|89347212|gb|ABD71415.1| flagellar basal-body rod protein FlgC [Rhodoferax ferrireducens T118] Length = 134 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N + EM MI ++ + + +++ + +L+ ++ Sbjct: 89 GYVTQSNVNPIEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQ 131 Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEV 44 M + FN+ +A A QRL+ VA N++N D V G++ +V F V Sbjct: 3 MFSIFNVSGSAISAQSQRLNVVASNLANADAVAGPDGQGYKGRQVVFETV 52 >gi|269965426|ref|ZP_06179545.1| Flagellar basal-body rod protein flgC [Vibrio alginolyticus 40B] gi|269829905|gb|EEZ84135.1| Flagellar basal-body rod protein flgC [Vibrio alginolyticus 40B] Length = 70 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 25 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 67 >gi|99082804|ref|YP_614958.1| flagellar basal body rod protein FlgC [Ruegeria sp. TM1040] gi|99039084|gb|ABF65696.1| Flagellar basal-body rod protein flgC [Ruegeria sp. TM1040] Length = 130 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S ++ + A RL+ V++N+SN DT G+R V F V D++ +S V G Sbjct: 6 KSLSVTASGLRAQAARLTHVSENISNADTPGYRRKTVSFQSV-----RDLETDVSQVRVG 60 Query: 63 KEYLSKE 69 + L + Sbjct: 61 RVSLDRT 67 Score = 41.2 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G E SN + M E+ + + + + D+ + Sbjct: 84 GHYEGSNVDLMIEIADAREAQRTYEANLKMFDQTRQM 120 >gi|330955627|gb|EGH55887.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 208 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +VI L S QG + + + P G + LE+SN + Sbjct: 115 QVIGQTSLTSFANVQGLAQAGGTNWRETFASGVPVSGAPQSGTLGYITGQ-ALEESNVDL 173 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 174 TMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 206 >gi|78047580|ref|YP_363755.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927969|ref|ZP_08189190.1| flagellar hook-associated protein FlgK [Xanthomonas perforans 91-118] gi|78036010|emb|CAJ23701.1| flagellar hook-associated protein 1 (HAP1) [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541654|gb|EGD13175.1| flagellar hook-associated protein FlgK [Xanthomonas perforans 91-118] Length = 624 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|54297179|ref|YP_123548.1| flagellar basal body rod protein FlgB [Legionella pneumophila str. Paris] gi|148358803|ref|YP_001250010.1| flagellar basal body rod protein FlgB [Legionella pneumophila str. Corby] gi|296106848|ref|YP_003618548.1| flagellar basal-body rod protein FlgB [Legionella pneumophila 2300/99 Alcoy] gi|53750964|emb|CAH12375.1| Flagellar basal-body rod protein FlgB [Legionella pneumophila str. Paris] gi|148280576|gb|ABQ54664.1| flagellar basal body rod protein FlgB [Legionella pneumophila str. Corby] gi|295648749|gb|ADG24596.1| flagellar basal-body rod protein FlgB [Legionella pneumophila 2300/99 Alcoy] Length = 130 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F I A +A +QR S +A+N++N +T F+ V F+EV+ A Q++ + Sbjct: 9 FGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATMAGNSQQLRVTSDQHI 68 Query: 65 YLSKE 69 + + Sbjct: 69 STNAD 73 >gi|157373209|ref|YP_001471809.1| flagellar basal-body rod protein FlgC [Shewanella sediminis HAW-EB3] gi|157315583|gb|ABV34681.1| flagellar basal-body rod protein FlgC [Shewanella sediminis HAW-EB3] Length = 139 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 18/110 (16%) Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 P I+N + GE+S G + + D P P D Sbjct: 47 PVFSTIYNQTQAGEVS--GAQVEVAAIVETDAPLDMRYE---------PDHPFAD----- 90 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 ++G++ SN N++ EM M+ ++ F + ++++ +SM + + + + Sbjct: 91 -EQGYVAYSNVNTVEEMADMMAASRSFETSVEVMNQA-RSMQQGLLQLGT 138 Score = 40.0 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 16/84 (19%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTD----T--VGFRTIKVKFSEVVGAIKNDIDQKISF 58 + I A A RL+TVA N++N T +R +K FS + + Sbjct: 7 YQIAGAGMHAQSIRLNTVASNLANAGAAAETQDSAYRALKPVFSTIYNQTQ--------- 57 Query: 59 VASGKEYLSKEVGSFISTGTELDF 82 A EV + + T LD Sbjct: 58 -AGEVSGAQVEVAAIVETDAPLDM 80 >gi|146296278|ref|YP_001180049.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409854|gb|ABP66858.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 146 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 M + NI +A A R+ +A N++N +T G +R V F E Sbjct: 3 MFDAINISASALHAQRVRMDVIAQNIANANTTRTEDGTPYRRKIVVFEE 51 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + + EM MI ++ + + T ++ KSM+ I I Sbjct: 107 NVDIVTEMVNMIEASRAYEANVTAMNIT-KSMITRIFEIG 145 >gi|311031940|ref|ZP_07710030.1| flagellar hook-associated protein FlgK [Bacillus sp. m3-13] Length = 620 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + + + L TV N++N +T G+ +V F V G+ Sbjct: 7 SLEVARRGLVTQQTALQTVGHNIANANTPGYTRQRVNF---VQTEPYPAPSLNRPQIPGQ 63 Query: 64 EYLSKEVGSFIS 75 E GS Sbjct: 64 IGTGVEAGSIQR 75 Score = 43.1 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 17/41 (41%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM MI +N+ +I ++ + + I + Sbjct: 576 SGVSLDEEMTSMIQYQHAYNASARMITLTDELLDKIINGMG 616 >gi|261885051|ref|ZP_06009090.1| hypothetical protein CfetvA_07580 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 58 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 25/55 (45%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK 55 M + G++ + + +++++SN +TVG+++ + V+ + Sbjct: 1 MMIGYYNGISGIKSGNIGIDVISNDISNINTVGYKSSTAECKSVLYPGLDHTSSS 55 >gi|268589172|gb|ACZ06862.1| flagella hook-associated protein [Xanthomonas axonopodis pv. glycines] Length = 624 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|302389655|ref|YP_003825476.1| flagellar basal-body rod protein FlgB [Thermosediminibacter oceani DSM 16646] gi|302200283|gb|ADL07853.1| flagellar basal-body rod protein FlgB [Thermosediminibacter oceani DSM 16646] Length = 136 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 A R +A+N++N DT F+ V F E++ + + ++ + ++++S Sbjct: 15 MDAKWMRHEVLANNIANVDTPNFKRSDVVFEELLQKYLKESNSRLPLKTTSEKHIS---- 70 Query: 72 SFIST 76 + T Sbjct: 71 NLKPT 75 >gi|325923280|ref|ZP_08184953.1| flagellar hook-associated protein FlgK [Xanthomonas gardneri ATCC 19865] gi|325546207|gb|EGD17388.1| flagellar hook-associated protein FlgK [Xanthomonas gardneri ATCC 19865] Length = 624 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|326202857|ref|ZP_08192724.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens DSM 2782] gi|325986934|gb|EGD47763.1| flagellar hook-associated protein FlgK [Clostridium papyrosolvens DSM 2782] Length = 544 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 1 MQTSF---NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 MQ SF NI L+ ++ L TV N+SN T G+ + S + + Sbjct: 1 MQQSFFGLNIALSGLYTAQRNLDTVGHNLSNATTPGYSRQQTIQS---ASNPLAVLDGTG 57 Query: 58 FVASGKEYLSKE 69 V +G + + Sbjct: 58 MVGTGSQATGVQ 69 Score = 42.3 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 15/41 (36%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S N EM MI Q +N+ +I + I + Sbjct: 502 SGVNLNEEMTNMIKFQQSYNAAARMIVTMGQIYDTLINKLG 542 >gi|262404542|ref|ZP_06081097.1| flagellar basal-body rod protein FlgC [Vibrio sp. RC586] gi|262349574|gb|EEY98712.1| flagellar basal-body rod protein FlgC [Vibrio sp. RC586] Length = 138 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + ++ P PL + G++ N N M EM MI ++ + + + Sbjct: 70 GIVESDKPLVAEFNPEHPLANDE------GYIYKPNVNVMEEMANMISASRSYQTNVQVA 123 Query: 228 DENEKSMLEAIR 239 D +++ +L ++ Sbjct: 124 DASKQMLLRTLQ 135 >gi|91202525|emb|CAJ72164.1| strongly similar to flagellar basal-body rod protein FlgC [Candidatus Kuenenia stuttgartiensis] Length = 147 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 IP P D + GF+E N N EM ++ ++ + + +I+ ++ +A+ Sbjct: 91 IPGHPQADEN------GFVEMPNVNIATEMVDLVTASRSYEANLAVINSSKDITNQALSI 144 Query: 241 IA 242 I Sbjct: 145 IG 146 >gi|294624307|ref|ZP_06703010.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601389|gb|EFF45423.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 624 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|258514000|ref|YP_003190222.1| flagellar basal-body rod protein FlgB [Desulfotomaculum acetoxidans DSM 771] gi|257777705|gb|ACV61599.1| flagellar basal-body rod protein FlgB [Desulfotomaculum acetoxidans DSM 771] Length = 134 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 12/84 (14%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV------------GAIKNDIDQKISF 58 A A R +A+N++N +T GF+ V F ++ + S Sbjct: 15 AIDAGSLRQRVIANNIANINTPGFKKSSVAFESILKKNLNTGRIPLKYSDSRHFGAADSL 74 Query: 59 VASGKEYLSKEVGSFISTGTELDF 82 A + + S S G +D Sbjct: 75 DAINPTVVKENTTSMRSDGNNVDV 98 >gi|312135856|ref|YP_004003194.1| flagellar basal-body rod protein flgc [Caldicellulosiruptor owensensis OL] gi|311775907|gb|ADQ05394.1| flagellar basal-body rod protein FlgC [Caldicellulosiruptor owensensis OL] Length = 145 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQ 54 M + NI +A A R+ +A N++N +T G +R V F E ++Q Sbjct: 1 MFDAINISSSALTAQRVRMDVIAQNIANANTTRTENGQPYRRKIVVFEERKQNFSQILNQ 60 Query: 55 KISFVASGKE 64 KI + + Sbjct: 61 KIEQIQASSS 70 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N + + EM MI ++ + + T ++ KSM+ I Sbjct: 106 NVDIVTEMVNMIEASRSYEANVTALNIT-KSMITRTFEIG 144 >gi|304438469|ref|ZP_07398409.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368552|gb|EFM22237.1| flagellar basal-body rod protein FlgB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 139 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE------ 64 A A R +++N++N +T F+ V+F +++ D + V + Sbjct: 17 AMAASTLRHEVLSNNIANVNTPNFKRSHVRFEDLLKKELGLEDDPLMPVVRTHDRHLPLA 76 Query: 65 YLSKEVGSFISTGTELDFALEGD 87 Y K G + L+G+ Sbjct: 77 YRGKAHGVIEQ-ENTTNMRLDGN 98 >gi|259417635|ref|ZP_05741554.1| flagellar basal-body rod protein FlgC [Silicibacter sp. TrichCH4B] gi|259346541|gb|EEW58355.1| flagellar basal-body rod protein FlgC [Silicibacter sp. TrichCH4B] Length = 130 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S ++ + A RL+ V++N+SN DT G+R V F V D++ +S V G Sbjct: 6 KSLSVTASGLRAQAARLTHVSENISNADTPGYRRKTVSFQAV-----RDLETDVSQVKVG 60 Query: 63 KEYLSKE 69 + L + Sbjct: 61 RVSLDRS 67 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 G E SN + M E+ + + + + D+ + Sbjct: 84 GHYEGSNVDLMIEIADAREAQRTYEANLKMFDQTRQM 120 >gi|294665573|ref|ZP_06730854.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604671|gb|EFF48041.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 624 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|21242721|ref|NP_642303.1| flagellar hook-associated protein FlgK [Xanthomonas axonopodis pv. citri str. 306] gi|21108196|gb|AAM36839.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 624 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|166712056|ref|ZP_02243263.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzicola BLS256] Length = 624 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|88811799|ref|ZP_01127053.1| flagellar basal body rod protein [Nitrococcus mobilis Nb-231] gi|88791190|gb|EAR22303.1| flagellar basal body rod protein [Nitrococcus mobilis Nb-231] Length = 139 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + P PL D G++ SN N++ M MI ++ + + + Sbjct: 70 RGVVTSSAAAEPLYQPNNPLADAD------GYVYRSNVNTVEAMVNMISASRSYQNNVEV 123 Query: 227 IDENEKSMLEAIR 239 + + +L+ +R Sbjct: 124 VSTSRDLLLQTLR 136 Score = 42.0 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 7/82 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISF 58 F++ +A A RL+ A NM+N DTV ++ + F+ + +D + Sbjct: 9 FDVAGSAMSAQALRLNITASNMANADTVASTPERAYKARQPVFAAAL-NTAHDTVSAVPV 67 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 G S L Sbjct: 68 QLRGVVTSSAAAEPLYQPNNPL 89 >gi|229591865|ref|YP_002873984.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens SBW25] gi|229363731|emb|CAY51133.1| putative flagellar hook-associated protein [Pseudomonas fluorescens SBW25] Length = 682 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + NIG++ A + LS +++N++N +T G+ + + + F+ S Sbjct: 1 MSLLNIGMSGLNAAQGSLSVLSNNIANANTAGYSRQQT-----IQSANASNQYGGVFIGS 55 Query: 62 GKEYLS 67 G Sbjct: 56 GTTLAD 61 >gi|153213630|ref|ZP_01948903.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 1587] gi|153825350|ref|ZP_01978017.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MZO-2] gi|153829337|ref|ZP_01982004.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 623-39] gi|183179563|ref|ZP_02957774.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MZO-3] gi|229513843|ref|ZP_04403305.1| flagellar basal-body rod protein FlgC [Vibrio cholerae TMA 21] gi|229522148|ref|ZP_04411565.1| flagellar basal-body rod protein FlgC [Vibrio cholerae TM 11079-80] gi|229524194|ref|ZP_04413599.1| flagellar basal-body rod protein FlgC [Vibrio cholerae bv. albensis VL426] gi|229528796|ref|ZP_04418186.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 12129(1)] gi|254286492|ref|ZP_04961449.1| flagellar basal-body rod protein FlgC [Vibrio cholerae AM-19226] gi|258621047|ref|ZP_05716081.1| Flagellar basal-body rod protein flgC [Vibrio mimicus VM573] gi|258625275|ref|ZP_05720183.1| Flagellar basal-body rod protein flgC [Vibrio mimicus VM603] gi|261211324|ref|ZP_05925612.1| flagellar basal-body rod protein FlgC [Vibrio sp. RC341] gi|262170823|ref|ZP_06038501.1| flagellar basal-body rod protein FlgC [Vibrio mimicus MB-451] gi|262191691|ref|ZP_06049867.1| flagellar basal-body rod protein FlgC [Vibrio cholerae CT 5369-93] gi|297580845|ref|ZP_06942770.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC385] gi|124115829|gb|EAY34649.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 1587] gi|148875178|gb|EDL73313.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 623-39] gi|149741034|gb|EDM55103.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MZO-2] gi|150423441|gb|EDN15385.1| flagellar basal-body rod protein FlgC [Vibrio cholerae AM-19226] gi|183012974|gb|EDT88274.1| flagellar basal-body rod protein FlgC [Vibrio cholerae MZO-3] gi|229332570|gb|EEN98056.1| flagellar basal-body rod protein FlgC [Vibrio cholerae 12129(1)] gi|229337775|gb|EEO02792.1| flagellar basal-body rod protein FlgC [Vibrio cholerae bv. albensis VL426] gi|229341073|gb|EEO06078.1| flagellar basal-body rod protein FlgC [Vibrio cholerae TM 11079-80] gi|229349024|gb|EEO13981.1| flagellar basal-body rod protein FlgC [Vibrio cholerae TMA 21] gi|258582448|gb|EEW07289.1| Flagellar basal-body rod protein flgC [Vibrio mimicus VM603] gi|258586435|gb|EEW11150.1| Flagellar basal-body rod protein flgC [Vibrio mimicus VM573] gi|260839279|gb|EEX65905.1| flagellar basal-body rod protein FlgC [Vibrio sp. RC341] gi|261891899|gb|EEY37885.1| flagellar basal-body rod protein FlgC [Vibrio mimicus MB-451] gi|262032430|gb|EEY50992.1| flagellar basal-body rod protein FlgC [Vibrio cholerae CT 5369-93] gi|297534671|gb|EFH73507.1| flagellar basal-body rod protein FlgC [Vibrio cholerae RC385] gi|327484718|gb|AEA79125.1| Flagellar basal-body rod protein FlgC [Vibrio cholerae LMA3894-4] Length = 138 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + ++ P PL + G++ N N M EM MI ++ + + + Sbjct: 70 GIVESDKPLVAEFNPEHPLANDE------GYIYKPNVNVMEEMANMISASRSYQTNVQVA 123 Query: 228 DENEKSMLEAIR 239 D +++ +L ++ Sbjct: 124 DASKQMLLRTLQ 135 Score = 35.4 bits (81), Expect = 7.7, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 FN+ +A A RL+T + N++N D++ ++ F + + + D + Sbjct: 7 FNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGAELSKARFNRDPNVPV 66 Query: 59 VASG 62 G Sbjct: 67 KVLG 70 >gi|218288292|ref|ZP_03492591.1| flagellar basal-body rod protein FlgC [Alicyclobacillus acidocaldarius LAA1] gi|218241651|gb|EED08824.1| flagellar basal-body rod protein FlgC [Alicyclobacillus acidocaldarius LAA1] Length = 144 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVG--AIKNDID 53 TS +I + A + L+ +A+N++N +T G +R V F+ V + + + Sbjct: 4 NTSMDISASGLAANQLWLNVIANNIANVNTTRTPQGGPYRAEIVNFAPVENDVSFQTALG 63 Query: 54 QKISFVASGKEYLSKEV 70 Q + + G E S Sbjct: 64 QAVQGIGGGVEVTSITQ 80 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E SN N +M +I T+ + + T D ++ + A+ Sbjct: 99 GYVESSNVNLTTQMVDLIQATRAYQANATAFDAAKQMAVTAL 140 >gi|163789652|ref|ZP_02184090.1| Flagellar basal body rod protein FlgC [Carnobacterium sp. AT7] gi|159875184|gb|EDP69250.1| Flagellar basal body rod protein FlgC [Carnobacterium sp. AT7] Length = 145 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 26/43 (60%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+++ SN N EM M+ + +++ T ++ +++ + +A++ Sbjct: 99 GYVQQSNVNMADEMIDMMTTLRTYDANVTAMNASKEMLSKALQ 141 Score = 41.6 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 7/71 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G---FRTIKVKFSEVVGAIKNDIDQK 55 S I + +L T++ N++N +T G + +V F E + ++ ++ + Sbjct: 5 DSMQINASGLSLERLKLDTISTNIANVNTTRTEDGEGPYLKKEVVFEESLKQVETSLNGQ 64 Query: 56 ISFVASGKEYL 66 + + G + Sbjct: 65 GTEKSFGVKPT 75 >gi|326319095|ref|YP_004236767.1| flagellar basal-body rod protein FlgC [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375931|gb|ADX48200.1| flagellar basal-body rod protein FlgC [Acidovorax avenae subsp. avenae ATCC 19860] Length = 134 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N + EM MI ++ + + +++ + +L+ ++ Sbjct: 89 GYVTHSNVNPVEEMVNMISASRSYQNNVEVLNTTKSLLLKTLQ 131 Score = 42.7 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M + F + +A A QRL+ VA N++N D V ++ +V F + Sbjct: 3 MFSIFGVSGSAISAQAQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGDEGAAGV 62 Query: 55 KISFVASGK 63 ++S ++ + Sbjct: 63 RVSAISESQ 71 >gi|83589621|ref|YP_429630.1| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 39073] gi|83572535|gb|ABC19087.1| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 39073] Length = 145 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKIS 57 + I + A RL +A+N++N +T G +R F+E + + + S Sbjct: 6 ALAISASGLTAERLRLDIIANNLANINTTRTPRGGPYRREVPVFAERLQEAMGQLPGRPS 65 Query: 58 FVASGKEY 65 A G Sbjct: 66 SRAPGAGV 73 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI ++ + + T+++ + L+A+ Sbjct: 100 GYVHLPNINIVNEMVDMITASRAYEANVTVLNAAKAMTLKAL 141 >gi|84388089|ref|ZP_00990985.1| flagellar basal body rod protein [Vibrio splendidus 12B01] gi|84377156|gb|EAP94026.1| flagellar basal body rod protein [Vibrio splendidus 12B01] Length = 137 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 134 Score = 36.2 bits (83), Expect = 4.1, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + +N Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAEETYKARHAVFGAELNKARNSGHTVP 64 Query: 57 SFV 59 V Sbjct: 65 VKV 67 >gi|52841448|ref|YP_095247.1| flagellar basal body rod protein FlgB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294160|ref|YP_126575.1| flagellar basal body rod protein FlgB [Legionella pneumophila str. Lens] gi|52628559|gb|AAU27300.1| flagellar basal body rod protein FlgB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53753992|emb|CAH15463.1| Flagellar basal-body rod protein FlgB [Legionella pneumophila str. Lens] gi|307609974|emb|CBW99503.1| flagellar basal-body rod protein FlgB [Legionella pneumophila 130b] Length = 130 Score = 52.4 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F I A +A +QR S +A+N++N +T F+ V F+EV+ A Q++ + Sbjct: 9 FGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATMAGNSQQLRVTSDQHI 68 Query: 65 YLSKE 69 + + Sbjct: 69 NTNAD 73 >gi|332982896|ref|YP_004464337.1| flagellar hook-associated protein FlgK [Mahella australiensis 50-1 BON] gi|332700574|gb|AEE97515.1| flagellar hook-associated protein FlgK [Mahella australiensis 50-1 BON] Length = 495 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 1 MQTSFN---IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID 53 M ++F IG +A +Q L+ A N++N T G+ +V +V + Sbjct: 1 MSSTFYGLQIGKSAINLQQQALNVTAHNIANAGTPGYTRQQVISEAIVPPSTLGMG 56 >gi|120613057|ref|YP_972735.1| flagellar basal-body rod protein FlgC [Acidovorax citrulli AAC00-1] gi|120591521|gb|ABM34961.1| flagellar basal-body rod protein FlgC [Acidovorax citrulli AAC00-1] Length = 134 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N + EM MI ++ + + +++ + +L+ ++ Sbjct: 89 GYVTHSNVNPVEEMVNMISASRSYQNNVEVLNTTKSLLLKTLQ 131 Score = 42.7 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M + F + +A A QRL+ VA N++N D V ++ +V F + Sbjct: 3 MFSIFGVSGSAISAQAQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTAPMGGEGAAGV 62 Query: 55 KISFVASGK 63 ++S ++ + Sbjct: 63 RVSAISESQ 71 >gi|261253616|ref|ZP_05946189.1| flagellar basal-body rod protein FlgC [Vibrio orientalis CIP 102891] gi|260937007|gb|EEX92996.1| flagellar basal-body rod protein FlgC [Vibrio orientalis CIP 102891] Length = 138 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + + P PL + G++ N N M EM MI ++ + + + Sbjct: 70 GIVESDKPLSAEYNPDHPLANDE------GYIYKPNVNVMEEMANMISASRSYQTNVQVA 123 Query: 228 DENEKSMLEAIR 239 D +++ +L ++ Sbjct: 124 DASKQMLLRTLQ 135 Score = 36.2 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D++ ++ F + K D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGAELSKAKYGRDHTV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKLMG 70 >gi|253688974|ref|YP_003018164.1| flagellar basal-body rod protein FlgC [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755552|gb|ACT13628.1| flagellar basal-body rod protein FlgC [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 134 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G GE + +V+ + + S G VR N P+ E + + +G++ Sbjct: 36 GPDGEPYRAKQVVFEVN-AAPGQSTGGVRVANVIEDPSPARLVYEPGNPLADGQGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM I ++ + + +++ + ML+ + Sbjct: 95 NVDPVAEMVNTISASRSYQANVEVLNTTKSMMLKTLT 131 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 17/102 (16%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F I +A A QRL+ A N++N G +R +V F + Q Sbjct: 4 LNIFEISGSALSAQSQRLNVSASNLANADSVTGPDGEPYRAKQVVFE-----VNAAPGQS 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTELDFALEGDAWFALESPR 96 V + G L +G + + P Sbjct: 59 TGGVRVANVIEDPSPARLVYEPGNPL---ADGQGY--VRMPN 95 >gi|323703166|ref|ZP_08114819.1| flagellar basal-body rod protein FlgB [Desulfotomaculum nigrificans DSM 574] gi|323531825|gb|EGB21711.1| flagellar basal-body rod protein FlgB [Desulfotomaculum nigrificans DSM 574] Length = 132 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 A R +A+N++N +T GF+ V F E + A + Sbjct: 15 GLDASALRQRVIANNVANLNTPGFKKSYVSFEEQLKAAMESGGGPLKGT 63 >gi|291562058|emb|CBL40874.1| flagellar hook-associated protein FlgK [butyrate-producing bacterium SS3/4] Length = 557 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-----VGAIKNDIDQKIS 57 + FN L+A A ++RL N+SN +T G+ +++ S + V N + + Sbjct: 7 SGFNTALSALQANQKRLDITGQNLSNMNTAGYTRQQLEASSLNYTNPVSHYSNGNETAVG 66 Query: 58 FVAS 61 F S Sbjct: 67 FGVS 70 >gi|27363707|ref|NP_759235.1| flagellar basal body rod protein FlgC [Vibrio vulnificus CMCP6] gi|37679145|ref|NP_933754.1| flagellar basal body rod protein FlgC [Vibrio vulnificus YJ016] gi|320157111|ref|YP_004189490.1| flagellar basal-body rod protein FlgC [Vibrio vulnificus MO6-24/O] gi|27359823|gb|AAO08762.1| flagellar basal-body rod protein FlgC [Vibrio vulnificus CMCP6] gi|37197887|dbj|BAC93725.1| flagellar basal body rod protein FlgC [Vibrio vulnificus YJ016] gi|319932423|gb|ADV87287.1| flagellar basal-body rod protein FlgC [Vibrio vulnificus MO6-24/O] Length = 138 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + + P PL + G++ N N M EM MI ++ + + + Sbjct: 70 GIVESDKPLSAEYNPEHPLANDE------GYIYKPNVNVMEEMANMISASRAYQTNVQVA 123 Query: 228 DENEKSMLEAIR 239 D +++ +L ++ Sbjct: 124 DASKQMLLRTLQ 135 Score = 36.2 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + + + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMYNRGDTV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVLG 70 >gi|325916941|ref|ZP_08179185.1| flagellar hook-associated protein FlgK [Xanthomonas vesicatoria ATCC 35937] gi|325536844|gb|EGD08596.1| flagellar hook-associated protein FlgK [Xanthomonas vesicatoria ATCC 35937] Length = 624 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|58582202|ref|YP_201218.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576762|ref|YP_001913691.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576954|ref|YP_001913883.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426796|gb|AAW75833.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188521214|gb|ACD59159.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521406|gb|ACD59351.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae PXO99A] Length = 624 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|167037671|ref|YP_001665249.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040332|ref|YP_001663317.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X514] gi|256750738|ref|ZP_05491623.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus CCSD1] gi|300914416|ref|ZP_07131732.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X561] gi|307264864|ref|ZP_07546426.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter wiegelii Rt8.B1] gi|307724348|ref|YP_003904099.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X513] gi|320116086|ref|YP_004186245.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389485|ref|ZP_08211052.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus JW 200] gi|166854572|gb|ABY92981.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X514] gi|166856505|gb|ABY94913.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750321|gb|EEU63340.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus CCSD1] gi|300889351|gb|EFK84497.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X561] gi|306920122|gb|EFN50334.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter wiegelii Rt8.B1] gi|307581409|gb|ADN54808.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X513] gi|319929177|gb|ADV79862.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994490|gb|EGD52915.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus JW 200] Length = 147 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 23/44 (52%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G++E N N + EM MI T+ + + T + ++ +++ Sbjct: 99 QNGYVEYPNVNIVSEMVDMISATRAYEANVTAFNASKAMFQKSL 142 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 +S +I + A R+ +A N++N +T G +R V E+ I K+ Sbjct: 5 SSMDISASGLTAERLRMDIIAQNIANVNTTRTVQGGPYRRKLVVLKEIQPDSFESILDKV 64 Query: 57 SFVASGKEY 65 SGK Sbjct: 65 KGKYSGKGV 73 >gi|296452609|ref|ZP_06894303.1| flagellar hook-associated protein FlgK [Clostridium difficile NAP08] gi|296880979|ref|ZP_06904925.1| flagellar hook-associated protein FlgK [Clostridium difficile NAP07] gi|296258570|gb|EFH05471.1| flagellar hook-associated protein FlgK [Clostridium difficile NAP08] gi|296428000|gb|EFH13901.1| flagellar hook-associated protein FlgK [Clostridium difficile NAP07] Length = 436 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N + + ++ + T++ N+SN DT G+ + +F+ + I G Sbjct: 8 LNTANSGMNSHQKAIQTISHNISNLDTEGYSRQRTEFATNSPMYMPSLSNSIGRGQLGTG 67 Query: 65 YLSKEV 70 +V Sbjct: 68 VHVTDV 73 Score = 40.8 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 17/40 (42%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + EM ++I + + + + ++ + + I I Sbjct: 396 SGVSLDEEMTELIKIQRSYQASAKVMSTAVQLLDVVINGI 435 >gi|90021858|ref|YP_527685.1| GTP-binding protein LepA [Saccharophagus degradans 2-40] gi|89951458|gb|ABD81473.1| flagellar basal-body rod protein FlgB [Saccharophagus degradans 2-40] Length = 134 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 7/72 (9%) Query: 1 MQTSFNIGL----AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L +A +R +A+N++N +T G++ + F A+K+ + Q I Sbjct: 1 MAISFDKALGIYESALSLRSERAGVLANNLANVNTPGYKARDIDFQ---QALKDSMGQGI 57 Query: 57 SFVASGKEYLSK 68 A+ + + Sbjct: 58 GGKAAKTTHAAH 69 >gi|148266225|ref|YP_001232931.1| flagellar basal-body rod protein FlgC [Geobacter uraniireducens Rf4] gi|146399725|gb|ABQ28358.1| flagellar basal-body rod protein FlgC [Geobacter uraniireducens Rf4] Length = 146 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 12/82 (14%) Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 +G+ ++ Q R + P+ ++G++ N N + EM MI Sbjct: 73 QVGVVQINEDQNPPRLQYDPTHPDAN------------QQGYVALPNVNVVEEMADMIAA 120 Query: 217 TQKFNSITTLIDENEKSMLEAI 238 T+ + + T + ++ + Sbjct: 121 TRTYEANVTAAQAAKSMAMKTL 142 Score = 40.0 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 11/79 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS-----EVVGAIKND 51 TS +I +A A R++ ++ N++N ++ G +R FS E ++ + Sbjct: 5 TSMDISSSALTAERTRMNLISSNLANANSTRTAEGGPYRRKDAVFSARPVAESFSSVFSK 64 Query: 52 IDQKISFVASGKEYLSKEV 70 + G ++++ Sbjct: 65 TGNRGVPQQVGVVQINEDQ 83 >gi|83646783|ref|YP_435218.1| flagellar basal-body rod protein FlgC [Hahella chejuensis KCTC 2396] gi|83634826|gb|ABC30793.1| flagellar basal-body rod protein FlgC [Hahella chejuensis KCTC 2396] Length = 133 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G++E N + EM M+ T+ + + +++ + L+A+ I S Sbjct: 88 GYVEMPAINPVDEMTSMMLATRAYEANVSVLSAAKTMALKAL-EIGS 133 >gi|269961597|ref|ZP_06175959.1| Flagellar basal-body rod protein flgC [Vibrio harveyi 1DA3] gi|269833638|gb|EEZ87735.1| Flagellar basal-body rod protein flgC [Vibrio harveyi 1DA3] Length = 124 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 79 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 121 >gi|330953722|gb|EGH53982.1| flagellar hook protein FlgE [Pseudomonas syringae Cit 7] Length = 162 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 153 KVIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 +VI L S QG + + + P G + LE+SN + Sbjct: 69 QVIGQTSLTSFANVQGLAQAGGTNWRETFASGVPVSGAPQSGTLGYITGQ-ALEESNVDL 127 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 128 TMELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 160 >gi|66768556|ref|YP_243318.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. campestris str. 8004] gi|66573888|gb|AAY49298.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 624 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKISD 61 >gi|84624094|ref|YP_451466.1| flagellar hook-associated protein FlgK [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368034|dbj|BAE69192.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 624 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|149188064|ref|ZP_01866359.1| flagellar basal-body rod protein C [Vibrio shilonii AK1] gi|148838052|gb|EDL54994.1| flagellar basal-body rod protein C [Vibrio shilonii AK1] Length = 138 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + + P PL + G++ N N M EM MI ++ + + + Sbjct: 70 GIVESDKPLSAEYNPDHPLANDE------GYIYKPNVNVMEEMANMISASRSYQTNVQVA 123 Query: 228 DENEKSMLEAIR 239 D +++ +L +R Sbjct: 124 DASKQMLLSTLR 135 Score = 36.6 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D++ ++ F + + + D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKETYKARHAVFGAELSKAQYNRDHSV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVLG 70 >gi|289578436|ref|YP_003477063.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter italicus Ab9] gi|297544712|ref|YP_003677014.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528149|gb|ADD02501.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter italicus Ab9] gi|296842487|gb|ADH61003.1| flagellar basal-body rod protein FlgC [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 147 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 23/44 (52%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G++E N N + EM MI T+ + + T + ++ +++ Sbjct: 99 QNGYVEYPNVNIVSEMVDMISATRAYEANVTAFNASKAMFQKSL 142 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 +S +I + A R+ ++ N++N +T G +R V E+ I K+ Sbjct: 5 SSMDISASGLTAERVRMDVISQNIANVNTTRTSQGGPYRRKLVVLKEIQPDSFESILDKV 64 Query: 57 SFVASGKEY 65 SGK Sbjct: 65 KGKYSGKGV 73 >gi|28897550|ref|NP_797155.1| flagellar basal body rod protein FlgC [Vibrio parahaemolyticus RIMD 2210633] gi|153839687|ref|ZP_01992354.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus AQ3810] gi|260364609|ref|ZP_05777211.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus K5030] gi|260878286|ref|ZP_05890641.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus AN-5034] gi|260898116|ref|ZP_05906612.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus Peru-466] gi|260901951|ref|ZP_05910346.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus AQ4037] gi|5361006|gb|AAD42913.1|U12817_7 polar flagellar FlgC homolog [Vibrio parahaemolyticus] gi|28805762|dbj|BAC59039.1| polar flagellar FlgC [Vibrio parahaemolyticus RIMD 2210633] gi|149746797|gb|EDM57785.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus AQ3810] gi|308086105|gb|EFO35800.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus Peru-466] gi|308090161|gb|EFO39856.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus AN-5034] gi|308106781|gb|EFO44321.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus AQ4037] gi|308115115|gb|EFO52655.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus K5030] gi|328473455|gb|EGF44303.1| flagellar basal body rod protein FlgC [Vibrio parahaemolyticus 10329] Length = 137 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 134 Score = 36.2 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + D Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGDTVP 64 Query: 57 SFV 59 V Sbjct: 65 VKV 67 >gi|168334478|ref|ZP_02692649.1| Flagellar basal body rod protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 153 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 16/30 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 G++E N + + EM MI ++ + + T Sbjct: 108 GYVEMPNVDVVTEMVNMISASRSYEANVTA 137 Score = 38.5 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 6/30 (20%), Positives = 13/30 (43%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 + +I A RL + N++N ++ Sbjct: 5 SGMDIAATGLTAQRFRLDVITQNLANINST 34 >gi|21231391|ref|NP_637308.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991635|ref|YP_001903645.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. campestris str. B100] gi|21113056|gb|AAM41232.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167733395|emb|CAP51596.1| Flagellar hook-associated protein 1 (HAP1) [Xanthomonas campestris pv. campestris] Length = 624 Score = 52.0 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D +FV + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAFVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKISD 61 >gi|227112519|ref|ZP_03826175.1| flagellar basal body rod protein FlgC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328336|ref|ZP_03832360.1| flagellar basal body rod protein FlgC [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 134 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G GE + +V+ + + S G VR N P+ E + + +G++ Sbjct: 36 GPDGEPYRAKQVVFEVN-AAPGQSTGGVRVSNVIEDPSPARLVYEPGNPLADGQGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM I ++ + + +++ + ML+ + Sbjct: 95 NVDPVAEMVNTISASRSYQANVEVLNTTKSMMLKTLT 131 Score = 38.5 bits (89), Expect = 0.85, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 17/102 (16%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F I +A A QRL+ A N++N G +R +V F + Q Sbjct: 4 LNIFEISGSALSAQSQRLNVSASNLANADSVTGPDGEPYRAKQVVFE-----VNAAPGQS 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTELDFALEGDAWFALESPR 96 V + G L +G + + P Sbjct: 59 TGGVRVSNVIEDPSPARLVYEPGNPL---ADGQGY--VRMPN 95 >gi|163803175|ref|ZP_02197058.1| putative flagellar hook-associated protein [Vibrio sp. AND4] gi|159173075|gb|EDP57908.1| putative flagellar hook-associated protein [Vibrio sp. AND4] Length = 457 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T G+ + + V N + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVANINTPGYSRQQALMASVGDGKYNKLSPGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|154250318|ref|YP_001411143.1| flagellar hook-associated protein FlgK [Fervidobacterium nodosum Rt17-B1] gi|154154254|gb|ABS61486.1| flagellar hook-associated protein FlgK [Fervidobacterium nodosum Rt17-B1] Length = 847 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N GL A + ++ VA N++N +T GF + + + + Q + G Sbjct: 10 LNTGLLGVYASKLAMNVVAHNIANANTPGFSRQRPELLTMPPIPITSLTQPAVPLQIGTG 69 Query: 65 YLSKEV 70 +++ Sbjct: 70 VYVRDI 75 Score = 42.7 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 25/96 (26%) Query: 152 GKVIATMGLYS-----VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 G V+A +G+ S + + +++E G + + Sbjct: 768 GSVVAELGVESETAMKIKSNTDLMKKEIDGERERVKG--------------------VSL 807 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 EM MI Q FN+ ++ + + I + Sbjct: 808 DEEMANMIKYQQAFNAAARVMTAVDDMISRVIDKLG 843 >gi|114762160|ref|ZP_01441628.1| flagellar basal-body rod protein FlgC [Pelagibaca bermudensis HTCC2601] gi|114545184|gb|EAU48187.1| flagellar basal-body rod protein FlgC [Roseovarius sp. HTCC2601] Length = 130 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + ++ + A RL V++N++N DT G+R + F + + V +G Sbjct: 6 DALSVSSSGLRAQADRLRVVSENIANVDTPGYRRKTLPFE------LGEGSDGVREVQAG 59 Query: 63 KEYLSKE 69 L + Sbjct: 60 DTRLDRS 66 >gi|88858137|ref|ZP_01132779.1| flagellar hook-associated protein [Pseudoalteromonas tunicata D2] gi|88819754|gb|EAR29567.1| flagellar hook-associated protein [Pseudoalteromonas tunicata D2] Length = 681 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 G++ A ++ L T N++N +T G+ V+ VG I F+ +G + Sbjct: 6 LGTGVSGLAAAQKGLDTTGHNIANVNTTGYNRQTVEQISTVG-----IPFGGVFLGNGTQ 60 Query: 65 YLSKE 69 S Sbjct: 61 VSSIS 65 >gi|311030132|ref|ZP_07708222.1| flagellar basal body rod protein FlgC [Bacillus sp. m3-13] Length = 150 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G++E N + + EM ++ ++ + + T+ + ++ M++ + + Sbjct: 105 GYVELPNVDPLKEMVDLMSASRSYEANVTVFNASKGIMMKTL-ELG 149 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M S NI +A A R+ ++ NM+N D+ Sbjct: 3 MFKSMNISSSALTAQRLRMDVISSNMANVDST 34 >gi|138894738|ref|YP_001125191.1| flagellar basal body rod protein FlgC [Geobacillus thermodenitrificans NG80-2] gi|196247641|ref|ZP_03146343.1| flagellar basal-body rod protein FlgC [Geobacillus sp. G11MC16] gi|134266251|gb|ABO66446.1| Flagellar basal-body rod protein [Geobacillus thermodenitrificans NG80-2] gi|196212425|gb|EDY07182.1| flagellar basal-body rod protein FlgC [Geobacillus sp. G11MC16] Length = 150 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 17/84 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKV-------KFSE 43 M S NI +A A R+ ++ N++N DT G +R V +FS Sbjct: 3 MFQSLNISASALTAQRLRMDVISSNIANVDTTRARLVNGEWEPYRRKVVVVEPRGEQFSS 62 Query: 44 VVGAIKNDIDQKISFVASGKEYLS 67 + A D S V + Sbjct: 63 YLQAALGRTDAVGSGVRVREIVDD 86 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM +I T+ + + T ++ ++ +++A+ Sbjct: 105 GYVRLPNVDPLKEMVDLIGATRSYEANVTALNASKGMLMKAL 146 >gi|218516400|ref|ZP_03513240.1| flagellar hook protein FlgE [Rhizobium etli 8C-3] Length = 126 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFR 35 S ++ A RLSTV+DN+++ +TVG++ Sbjct: 31 SMKTAVSGMSAQANRLSTVSDNIADANTVGYK 62 >gi|301631992|ref|XP_002945075.1| PREDICTED: flagellar basal-body rod protein flgC-like [Xenopus (Silurana) tropicalis] Length = 134 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 25/43 (58%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N++ EM MI ++ + + +++ + +L+ ++ Sbjct: 89 GYVNHSNVNAVEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQ 131 Score = 40.4 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISF 58 FN+ +A A QRL+ VA N++N D V ++ +V F + ++ Sbjct: 7 FNVSGSAISAQSQRLNVVASNLANVDAVAGPDGQAYKARQVVFQTTPMGSDSAAGVRVRS 66 Query: 59 VASGKE 64 + + Sbjct: 67 IEESQV 72 >gi|91792662|ref|YP_562313.1| flagellar basal body rod protein FlgC [Shewanella denitrificans OS217] gi|91714664|gb|ABE54590.1| flagellar basal-body rod protein FlgC [Shewanella denitrificans OS217] Length = 138 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + D + + + +R Sbjct: 93 GFIYKPNVNVMEEMADMISASRSYQMNVQVADATKTMLQQTLR 135 Score = 35.0 bits (80), Expect = 8.2, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 9/94 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 F++ + A RL+T A N++N D+V +R F + +D Sbjct: 5 NIFDVSGSGMAAQSIRLNTTASNIANADSVSSSVDKTYRARHPIFEAEL-NKAHDQQNGT 63 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 V S + + + +GD + Sbjct: 64 KGVQVRAIVESDK--PLLKEYSPSHPMADGDGFI 95 >gi|158320509|ref|YP_001513016.1| flagellar basal-body rod protein FlgB [Alkaliphilus oremlandii OhILAs] gi|158140708|gb|ABW19020.1| flagellar basal-body rod protein FlgB [Alkaliphilus oremlandii OhILAs] Length = 131 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN 50 M + NI A A +R + +N++N +T F+ V F +V+ N Sbjct: 1 MYNNINILTKALDASWRRNEVITNNIANAETPNFKRSDVIFEDVLREHLN 50 >gi|262394941|ref|YP_003286795.1| flagellar basal-body rod protein FlgC [Vibrio sp. Ex25] gi|262338535|gb|ACY52330.1| flagellar basal-body rod protein FlgC [Vibrio sp. Ex25] Length = 137 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 134 Score = 36.6 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + D Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGDTVP 64 Query: 57 SFVAS 61 V Sbjct: 65 VKVMG 69 >gi|89098646|ref|ZP_01171528.1| flagellar basal-body rod protein C [Bacillus sp. NRRL B-14911] gi|89086608|gb|EAR65727.1| flagellar basal-body rod protein C [Bacillus sp. NRRL B-14911] Length = 149 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM +I T+ + + T+ + ++ M++A+ Sbjct: 104 GYVQMPNVDPLREMVDLISATRSYEANVTVFNASKSMMMKAL 145 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M S N +A A R+ ++ NM+N D+ Sbjct: 3 MFHSMNTTSSALTAQRLRMDVISSNMANVDST 34 >gi|127512277|ref|YP_001093474.1| flagellar basal body rod protein FlgC [Shewanella loihica PV-4] gi|126637572|gb|ABO23215.1| flagellar basal-body rod protein FlgC [Shewanella loihica PV-4] Length = 139 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + D + + + +R Sbjct: 93 GFIYKPNVNVMEEMANMISASRSYQMNVQVADAAKSMLQQTLR 135 Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N D+V +R F + + + Sbjct: 5 NIFNVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPVFEAELAKASHQQNTSQ 64 Query: 57 SFVASG 62 + +G Sbjct: 65 AVKVAG 70 >gi|119775452|ref|YP_928192.1| flagellar basal body rod protein FlgC [Shewanella amazonensis SB2B] gi|119767952|gb|ABM00523.1| flagellar basal-body rod protein FlgC [Shewanella amazonensis SB2B] Length = 137 Score = 52.0 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + D + +++ +R Sbjct: 92 GFIYKPNVNVMEEMADMISASRSYQMNVQVADTAKSMLMQTLR 134 Score = 38.5 bits (89), Expect = 0.87, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N D+V +R F + + Sbjct: 5 NIFNVSGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPVFEAELAKASQQQSARG 64 Query: 57 SFV 59 V Sbjct: 65 VNV 67 >gi|146281777|ref|YP_001171930.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri A1501] gi|145569982|gb|ABP79088.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri A1501] Length = 669 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +IGL+ A + L+T +N++N DT G+ VV + + +V Sbjct: 1 MASLISIGLSGLSASQTALATTGNNIANVDTAGYSR-----QSVVQKSASAEFIGVGYVG 55 Query: 61 SGKEYLS 67 +G Sbjct: 56 NGTTVAD 62 >gi|94312667|ref|YP_585876.1| flagellar basal body rod protein FlgC [Cupriavidus metallidurans CH34] gi|93356519|gb|ABF10607.1| flagellar basal body rod protein FlgC [Cupriavidus metallidurans CH34] Length = 135 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM MI ++ + + +++ + ML+ + Sbjct: 90 GYVTMPNVNPVEEMVNMISASRSYQANVEVLNTAKNMMLKTLT 132 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT----VG--FRTIKVKFSEVVGAIKNDID 53 + F++ +A A QR++ A N++N D+ G +R +V F ++D+ Sbjct: 4 MSIFDVAGSAMAAQSQRMNVTASNLANADSAVAPNGQPYRAKQVIFEMAPTPGQSDVG 61 >gi|260774936|ref|ZP_05883837.1| flagellar basal-body rod protein FlgC [Vibrio coralliilyticus ATCC BAA-450] gi|260609191|gb|EEX35349.1| flagellar basal-body rod protein FlgC [Vibrio coralliilyticus ATCC BAA-450] Length = 138 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 93 GYIYKPNVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQ 135 Score = 38.5 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 16/85 (18%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + K D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSKAKYGRDHTV 64 Query: 57 SFVASGKEYLSKEVGSFISTGTELD 81 G + + LD Sbjct: 65 PVQVLG----------IVESDKPLD 79 >gi|289666054|ref|ZP_06487635.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 223 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D ++V + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAYVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|89092134|ref|ZP_01165089.1| flagellar basal-body rod protein FlgC [Oceanospirillum sp. MED92] gi|89083869|gb|EAR63086.1| flagellar basal-body rod protein FlgC [Oceanospirillum sp. MED92] Length = 145 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V E P P+ D ++GF+ N N + EM MI ++ F T ++ Sbjct: 76 GIVESEAELRQEYNPAHPMAD------EQGFVYYPNVNVVEEMADMISASRSFQINTEIM 129 Query: 228 DENEKSMLEAIR 239 + ++ + + IR Sbjct: 130 NTAKQMLQQTIR 141 >gi|323163759|gb|EFZ49578.1| flagellar basal-body rod protein flgF domain protein [Escherichia coli E128010] Length = 77 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 2/79 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + A + + A N++N T GFR V ++ + V Sbjct: 1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV--PVEGLSLPTRTLVT 58 Query: 61 SGKEYLSKEVGSFISTGTE 79 + G T Sbjct: 59 ASTPGADMTPGKMDYTSRP 77 >gi|51246506|ref|YP_066390.1| flagellar basal body rod protein (FlgC) [Desulfotalea psychrophila LSv54] gi|50877543|emb|CAG37383.1| probable flagellar basal body rod protein (FlgC) [Desulfotalea psychrophila LSv54] Length = 143 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N +++ EM M+ T+ + + T I ++ L+A+ Sbjct: 98 GYVDMPNVDTLKEMVDMMSATRSYQANVTAIQSAKRMALKAL 139 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 + SF I +A A RL T++ N++N +T ++ V F ++ Sbjct: 3 ILNSFKISSSALKAQSIRLDTISSNIANAETTSTPEGGPYKKKSVYFQAKPLTFAEQLNG 62 Query: 55 KISFVASGKEYLS 67 ++ +G E ++ Sbjct: 63 SLNAKTTGVEVIN 75 >gi|86146157|ref|ZP_01064483.1| flagellar basal body rod protein [Vibrio sp. MED222] gi|218708802|ref|YP_002416423.1| flagellar basal body rod protein FlgC [Vibrio splendidus LGP32] gi|85836104|gb|EAQ54236.1| flagellar basal body rod protein [Vibrio sp. MED222] gi|218321821|emb|CAV17789.1| Polar flagellar FlgC [Vibrio splendidus LGP32] Length = 137 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 134 Score = 36.6 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + +N Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELNQARNSGHTVP 64 Query: 57 SFV 59 V Sbjct: 65 VKV 67 >gi|258625228|ref|ZP_05720140.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM603] gi|258582475|gb|EEW07312.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM603] Length = 457 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T GF + + V G + S Sbjct: 1 MNIVNIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYEKHSPGMGVEVS 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SVRRITDQ 68 >gi|332669180|ref|YP_004452188.1| flagellar hook-associated protein FlgK [Cellulomonas fimi ATCC 484] gi|332338218|gb|AEE44801.1| flagellar hook-associated protein FlgK [Cellulomonas fimi ATCC 484] Length = 480 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + L++ +A Q L N++N +TVG+ + S + A + G Sbjct: 5 SGLGTALSSLIAQRQALDVAGQNVANANTVGYTRQRASMSALPAAQVPSMFSVNHGAGEG 64 Query: 63 KEYLSKE 69 E Sbjct: 65 VRVTGIE 71 Score = 36.6 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 3/39 (7%), Positives = 13/39 (33%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 ++ E M+ + + ++ ++ + I Sbjct: 438 VDTDEETVNMLAFQRAYEGAARVLTAVDEMLDTLINRTG 476 >gi|168187526|ref|ZP_02622161.1| flagellar hook-associated protein FlgK [Clostridium botulinum C str. Eklund] gi|169294577|gb|EDS76710.1| flagellar hook-associated protein FlgK [Clostridium botulinum C str. Eklund] Length = 678 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ N+G A + L + N++N++T G+ + +D ++ G Sbjct: 6 STLNVGKRGLYAQQGALDVTSHNIANSNTKGYTRQRALMETTRPFGMPSMDNQVGPGQIG 65 Query: 63 KEY 65 Sbjct: 66 TGV 68 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 34/96 (35%), Gaps = 12/96 (12%) Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFL--------ED-SNAN 205 T+GL ++ ++ +S + +++ + +G L E S + Sbjct: 582 TLGLDTITGDINGMKI-DSYFKDTVDKLGVQEQEAQRIVKNQGALLKEFSQRRESISGVS 640 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ + + +I ++ + I + Sbjct: 641 LNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGL 676 >gi|304558598|gb|ADM41262.1| Flagellar hook-associated protein FlgK [Edwardsiella tarda FL6-60] Length = 546 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N ++ A + L+ ++N++N T G+ V F+E N F+ Sbjct: 1 MANLINNAMSGLSAAQTALAVTSNNINNVYTAGYNRQSVSFAE-----NNGTSTPAGFIG 55 Query: 61 SGKEY 65 +G Sbjct: 56 NGVVV 60 >gi|262166284|ref|ZP_06034021.1| flagellar basal-body rod protein FlgC [Vibrio mimicus VM223] gi|262026000|gb|EEY44668.1| flagellar basal-body rod protein FlgC [Vibrio mimicus VM223] Length = 71 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + ++ P PL + G++ N N M EM MI ++ + + + Sbjct: 3 GIVESDKPLVAEFNPEHPLANDE------GYIYKPNVNVMEEMANMISASRSYQTNVQVA 56 Query: 228 DENEKSMLEAIR 239 D +++ +L ++ Sbjct: 57 DASKQMLLRTLQ 68 >gi|224373490|ref|YP_002607862.1| flagellar hook-associated protein FlgK [Nautilia profundicola AmH] gi|223589300|gb|ACM93036.1| flagellar hook-associated protein FlgK [Nautilia profundicola AmH] Length = 727 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISF 58 + TSF+ L A + + ++N+SN + + FS + + +I DI + Sbjct: 3 ISTSFSTALTGLKAHQTAIDVTSNNISNASNPDYVRERAVFSTLNPINSIPGDIGTGVQI 62 Query: 59 VASGKEYLSKEVGSFIST 76 + + + + ST Sbjct: 63 SSIYRITDTFLFNRYTST 80 Score = 35.0 bits (80), Expect = 9.7, Method: Composition-based stats. Identities = 4/34 (11%), Positives = 12/34 (35%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 S N E+ + + + + +I + + Sbjct: 687 SGVNIDEELVNLEQYQRGYQANAKVITTINQMLD 720 >gi|94266018|ref|ZP_01289739.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94270422|ref|ZP_01291737.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93450809|gb|EAT01850.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93453413|gb|EAT03835.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 118 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M L+ AL+Q+ S A N++N +T G++ +KV +E + + Sbjct: 1 MVGGIQAALSGLQALQQKNSATAHNVANVNTDGYKKVKVSLAETTPPGGVEARAEKIDTP 60 Query: 61 SGKEYLSKEVGSFISTGTELDFA 83 + G + + +D A Sbjct: 61 GPQVSEQTADGPELVEKSNVDLA 83 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +E SN + EM M+ + F + ++ ++ + + Sbjct: 75 VEKSNVDLAEEMPNMMLSRRYFQANLKVVQTEDERLGNLLN 115 >gi|323495379|ref|ZP_08100456.1| flagellar basal body rod protein FlgC [Vibrio brasiliensis LMG 20546] gi|323310302|gb|EGA63489.1| flagellar basal body rod protein FlgC [Vibrio brasiliensis LMG 20546] Length = 138 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + L D +++ +L ++ Sbjct: 93 GYIYKPNVNVMEEMANMISASRSYQTNVQLADASKQMLLRTLQ 135 Score = 36.9 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D++ ++ F + K D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGAELSKAKYGRDHTV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVLG 70 >gi|304310785|ref|YP_003810383.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium HdN1] gi|301796518|emb|CBL44726.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium HdN1] Length = 145 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F + +++ K ML A+ N+ Sbjct: 106 NVNVVEEMTNMISASRSFQTNADVMNSA-KQMLSAVLNLG 144 Score = 35.0 bits (80), Expect = 9.8, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I + A RL+T + N++N ++V +R F + + + + Sbjct: 7 FDIAGSGMSAQTVRLNTTSSNIANAESVASSVDKTYRARHPVF---MAQYTAALGNRPTD 63 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 +GK +V + + L Sbjct: 64 PLTGKANAGVDVVGIVESQAPL 85 >gi|289670516|ref|ZP_06491591.1| flagellar hook-associated protein FlgK [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 229 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G +A +A ++ LSTV+ N++N +T G+ +V+F A + D ++V + Sbjct: 1 MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEF-----ATRTPTDMGYAYVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GAKITD 61 >gi|157738153|ref|YP_001490837.1| flagellar basal body rod protein FlgC [Arcobacter butzleri RM4018] gi|157700007|gb|ABV68167.1| flagellar basal body rod protein FlgC [Arcobacter butzleri RM4018] Length = 154 Score = 51.6 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKN 50 +N+ + A R++ V+ N++N T G ++ +V F +V+ A N Sbjct: 5 DGYNVATSGMSAQRTRINVVSANIANAKTTHTAEGGPYKKQEVVFEDVLVANTN 58 Score = 37.7 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDEN---EKSMLEAIRN 240 N + EM +I + + + T + + + LE + + Sbjct: 116 NPVIEMVNLIEAMRSYEANVTSFNTHRGIDSKTLEILNS 154 >gi|50120637|ref|YP_049804.1| flagellar basal body rod protein FlgC [Pectobacterium atrosepticum SCRI1043] gi|49611163|emb|CAG74609.1| flagellar basal-body rod protein [Pectobacterium atrosepticum SCRI1043] Length = 134 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + S G VR N P+ E + + +G++ Sbjct: 36 GPDGQPYRAKQVVFEVN-AAPGQSTGGVRVANVIEDPSPARLVYEPGNPLADGQGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM I ++ + + +++ + ML+ + Sbjct: 95 NVDPVAEMVNTISASRSYQANVEVLNTTKSMMLKTLT 131 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 17/102 (16%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F I +A A QRL+ A N++N G +R +V F + Q Sbjct: 4 LNIFEISGSALSAQSQRLNVSASNLANADSVTGPDGQPYRAKQVVFE-----VNAAPGQS 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTELDFALEGDAWFALESPR 96 V + G L +G + + P Sbjct: 59 TGGVRVANVIEDPSPARLVYEPGNPL---ADGQGY--VRMPN 95 >gi|134300250|ref|YP_001113746.1| flagellar basal-body rod protein FlgB [Desulfotomaculum reducens MI-1] gi|134052950|gb|ABO50921.1| flagellar basal-body rod protein FlgB [Desulfotomaculum reducens MI-1] Length = 132 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 GL A A ++ +A+N++N +T GF+ V F + + A + + Sbjct: 12 LQQGLDAGAARQR---VIANNIANFNTPGFKKSYVSFEDQLKAALGNSGVSLKGT 63 >gi|315636296|ref|ZP_07891546.1| flagellar basal-body rod protein FlgC [Arcobacter butzleri JV22] gi|315479385|gb|EFU70068.1| flagellar basal-body rod protein FlgC [Arcobacter butzleri JV22] Length = 154 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKN 50 +N+ + A R++ V+ N++N T G ++ +V F +V+ A N Sbjct: 5 DGYNVATSGMSAQRTRINVVSANIANAKTTHTAEGGPYKKQEVVFEDVLVANTN 58 Score = 37.7 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDEN---EKSMLEAIRN 240 N + EM +I + + + T + + + LE + + Sbjct: 116 NPVIEMVNLIEAMRSYEANVTSFNTHRGIDSKTLEILNS 154 >gi|269138588|ref|YP_003295288.1| flagellar hook-associated protein [Edwardsiella tarda EIB202] gi|267984248|gb|ACY84077.1| flagellar hook-associated protein [Edwardsiella tarda EIB202] Length = 546 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N ++ A + L+ ++N++N T G+ V F+E N F+ Sbjct: 1 MANLINNAMSGLSAAQTALAVTSNNINNVYTAGYNRQTVSFAE-----NNGTSTPAGFIG 55 Query: 61 SGKEY 65 +G Sbjct: 56 NGVVV 60 >gi|261821151|ref|YP_003259257.1| flagellar basal body rod protein FlgC [Pectobacterium wasabiae WPP163] gi|261605164|gb|ACX87650.1| flagellar basal-body rod protein FlgC [Pectobacterium wasabiae WPP163] Length = 134 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G GE + +V+ + + S G VR N P+ E + + +G++ Sbjct: 36 GPDGEPYRAKQVVFEVN-AAPGQSTGGVRVANVIEDPSPARLVYEPGNPLADGQGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM I ++ + + +++ + M++ + Sbjct: 95 NVDPVAEMVNTISASRSYQANVEVLNTTKSMMMKTLT 131 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 17/102 (16%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F I +A A QRL+ A N++N G +R +V F + Q Sbjct: 4 LNIFEISGSALSAQSQRLNVSASNLANADSVTGPDGEPYRAKQVVFE-----VNAAPGQS 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTELDFALEGDAWFALESPR 96 V + G L +G + + P Sbjct: 59 TGGVRVANVIEDPSPARLVYEPGNPL---ADGQGY--VRMPN 95 >gi|91225871|ref|ZP_01260840.1| flagellar basal-body rod protein C [Vibrio alginolyticus 12G01] gi|91189521|gb|EAS75797.1| flagellar basal-body rod protein C [Vibrio alginolyticus 12G01] Length = 137 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 134 Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + D Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGDTVP 64 Query: 57 SFVAS 61 V Sbjct: 65 VKVMG 69 >gi|56554379|pdb|1WLG|A Chain A, Crystal Structure Of Flge31, A Major Fragment Of The Hook Protein gi|56554380|pdb|1WLG|B Chain B, Crystal Structure Of Flge31, A Major Fragment Of The Hook Protein gi|60594453|pdb|2BGY|A Chain A, Fit Of The X-Ray Strucutre Of The Baterial Flagellar Hook Fragment Flge31 Into An Em Map From The Hook Of Caulobacter Crescentus. gi|60594454|pdb|2BGZ|A Chain A, Atomic Model Of The Bacterial Flagellar Based On Docking An X-Ray Derived Hook Structure Into An Em Map Length = 299 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 13/70 (18%) Query: 80 LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASG----KYPV--------LDM 126 LD A+ + +F L G + +R+G+FK+ ++ +LV+ G YP Sbjct: 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGA 61 Query: 127 ASVPIQIPQK 136 PI IP Sbjct: 62 NPAPITIPNT 71 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 10/83 (12%) Query: 134 PQKDEIFNVGEKGEI-----SQKGKVIATMGLYSVDMSQGFVRRENS-GISPNIPPTPLE 187 P + + G + +++ +V+ + L + ++G + ++ + L Sbjct: 215 PGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALL 274 Query: 188 DLSGV----TVKRGFLEDSNANS 206 +G + G LE SN + Sbjct: 275 GTAGSGNFGKLTNGALEASNVDL 297 >gi|323498422|ref|ZP_08103418.1| flagellar basal body rod protein FlgC [Vibrio sinaloensis DSM 21326] gi|323316495|gb|EGA69510.1| flagellar basal body rod protein FlgC [Vibrio sinaloensis DSM 21326] Length = 138 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + + P PL + G++ N N M EM MI ++ + + + Sbjct: 70 GIVESDKPLSAEYNPDHPLANDE------GYIYKPNVNVMEEMANMISASRSYQTNVQVA 123 Query: 228 DENEKSMLEAIR 239 D +++ +L ++ Sbjct: 124 DASKQMLLRTLQ 135 Score = 36.2 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D++ ++ F + K D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGAELSKAKYGNDHTV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVMG 70 >gi|330899402|gb|EGH30821.1| flagellar hook protein FlgE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 93 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 7/92 (7%) Query: 154 VIATMGLYSVDMSQGFVRRENS------GISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 VI L S QG + + + P G + LE+SN + Sbjct: 1 VIGQTSLTSFANVQGLAQAGGTNWRETFASGVPVSGAPQSGTLGYITGQ-ALEESNVDLT 59 Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E+ +I + + I M I+ Sbjct: 60 MELVNLIKAQSNYQANAKTISTQSTIMQTTIQ 91 >gi|315497622|ref|YP_004086426.1| flagellar hook-associated protein flgk [Asticcacaulis excentricus CB 48] gi|315415634|gb|ADU12275.1| flagellar hook-associated protein FlgK [Asticcacaulis excentricus CB 48] Length = 718 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF-RTIKVKFSEVVGAIKNDIDQKISFVA 60 + NIG + + + +L V+DN+SN +T G+ R + + + V+G+ + +A Sbjct: 4 NSILNIGASGLMTAQSQLRVVSDNISNVNTPGYIRKVGTQQASVIGSQGAGVMSGQVMLA 63 Query: 61 SGK 63 + K Sbjct: 64 ADK 66 >gi|153834459|ref|ZP_01987126.1| flagellar basal-body rod protein FlgC [Vibrio harveyi HY01] gi|163802605|ref|ZP_02196497.1| flagellar basal-body rod protein C [Vibrio sp. AND4] gi|148869155|gb|EDL68187.1| flagellar basal-body rod protein FlgC [Vibrio harveyi HY01] gi|159173688|gb|EDP58507.1| flagellar basal-body rod protein C [Vibrio sp. AND4] Length = 137 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQ 134 Score = 36.2 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + D Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGDTVP 64 Query: 57 SFVAS 61 V Sbjct: 65 VKVMG 69 >gi|312882661|ref|ZP_07742398.1| flagellar basal body rod protein FlgC [Vibrio caribbenthicus ATCC BAA-2122] gi|309369622|gb|EFP97137.1| flagellar basal body rod protein FlgC [Vibrio caribbenthicus ATCC BAA-2122] Length = 138 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 93 GYIYKPNVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQ 135 Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D++ ++ F + K D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSISSSAKDTYKARHAVFGAELSKAKYGRDHTV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVLG 70 >gi|254508426|ref|ZP_05120546.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus 16] gi|219548636|gb|EED25641.1| flagellar basal-body rod protein FlgC [Vibrio parahaemolyticus 16] Length = 138 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 93 GYIYKPNVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQ 135 Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + K D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSKAKYGNDHTV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVMG 70 >gi|206890290|ref|YP_002248113.1| flagellar basal-body rod protein FlgC [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742228|gb|ACI21285.1| flagellar basal-body rod protein FlgC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 135 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N N M EM +I ++ + + T+I+ + + + Sbjct: 89 GYVKYPNVNPMEEMINLISASRAYEANLTMINSYKDMFMRTL 130 Score = 39.6 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKISF 58 + A + RL+ +A N++N ++ G +R V F+ + + Sbjct: 8 LKVSATGLEAQKIRLNVIASNLANINSTKTPEGGPYRRKDVLFTTYMYDQISQGVDVQRI 67 Query: 59 VASGKEY 65 V + + Sbjct: 68 VEDQRPF 74 >gi|15616183|ref|NP_244488.1| flagellar hook-associated protein FlgK [Bacillus halodurans C-125] gi|10176245|dbj|BAB07340.1| flagellar hook-associated protein 1 (HAP1) [Bacillus halodurans C-125] Length = 556 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKF--SEVVGAIKNDIDQKISFVASGK 63 + + L TV N++N +T G+ +V F ++ + + V +G Sbjct: 15 GMMTQQAALRTVGHNIANANTPGYTRQRVNFVQTQAYPGVGRNAPSIPGQVGTGV 69 Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM MI +N+ I + ++ + I + Sbjct: 512 SQVSLDEEMTLMIQFQHAYNAAARNITQIDEMLDRIINGMG 552 >gi|319787115|ref|YP_004146590.1| flagellar hook-associated protein FlgK [Pseudoxanthomonas suwonensis 11-1] gi|317465627|gb|ADV27359.1| flagellar hook-associated protein FlgK [Pseudoxanthomonas suwonensis 11-1] Length = 625 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + G A LA ++ LSTV+ N++N +T G+ +V F A + D V + Sbjct: 1 MSVLSTGTGALLAFQRALSTVSHNVANVNTEGYTRQRVDF-----AARRPSDYGYGHVGN 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GTQVAD 61 >gi|118444348|ref|YP_877945.1| flagellar hook-associated protein 1 [Clostridium novyi NT] gi|118134804|gb|ABK61848.1| flagellar hook-associated protein 1 [Clostridium novyi NT] Length = 676 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ N+G A + L + N++N++T G+ + +D ++ G Sbjct: 6 STLNVGKRGLYAQQGALDVTSHNIANSNTKGYTRQRALMETTRPFGMPSMDNQVGPGQIG 65 Query: 63 KEY 65 Sbjct: 66 TGV 68 Score = 40.4 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 34/96 (35%), Gaps = 12/96 (12%) Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFL--------ED-SNAN 205 T+GL ++ ++ +S + +++ + +G L E S + Sbjct: 580 TLGLDTITGDINGMKI-DSYFKDTVDKLGVQEQEAQRIVKNQGALLKEFSQRRESISGVS 638 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ + + +I ++ + I + Sbjct: 639 LNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGL 674 >gi|306821564|ref|ZP_07455162.1| flagellar hook-associated protein FlgK [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550309|gb|EFM38302.1| flagellar hook-associated protein FlgK [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 536 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 18/38 (47%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 + N + A ++ L T+ N++N +T G+ + Sbjct: 20 SGLNAATSGLFAAQRVLDTIGHNIANQNTPGYTRQRAN 57 Score = 36.2 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 18/43 (41%) Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 E S+ + E+ M+ +N+ +I ++ + I + Sbjct: 490 EVSSVSENEELTNMVKFQHAYNASARMITTVDEMIDVLINRMG 532 >gi|220934392|ref|YP_002513291.1| flagellar basal-body rod protein FlgC [Thioalkalivibrio sp. HL-EbGR7] gi|219995702|gb|ACL72304.1| flagellar basal-body rod protein FlgC [Thioalkalivibrio sp. HL-EbGR7] Length = 139 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 + G + + + ++ P PL + ++G++ N + + EM Sbjct: 55 QAAGQSGSATPVRVVNVLESQAEPVAEYAPNHPLAN------EQGYIFKPNVSVVEEMAN 108 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 MI ++ + + +++ ++ +L ++ Sbjct: 109 MISASRSYQNNVEVMNTTKQLLLRTLQ 135 >gi|24216895|ref|NP_714376.1| hypothetical protein LA_4196 [Leptospira interrogans serovar Lai str. 56601] gi|24198278|gb|AAN51394.1| FlgG [Leptospira interrogans serovar Lai str. 56601] Length = 283 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 67/203 (33%), Gaps = 36/203 (17%) Query: 20 STVADNMS-------------NTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 ++DN+S N T G+++ F++ + + I+ Sbjct: 18 DLISDNLSLLEEYKLLHSDLSNIKTYGYKS---YFNDRLNKAEAKINNI----------- 63 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 G +T + + A+ G +F + G I TR ++ + LV+ Y + Sbjct: 64 ---QGILKTTKSRFNCAILGFGFFKIRLSNGLIGYTRQCELRLNKEFELVNKQ--YSFYN 118 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQ---KGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 +P + ++ + I + ++ + Y VD E + + Sbjct: 119 KIFMPREFDSDTFKIHLDKSISIQTYKKEKLIVGKLLTYKVDPELLEYYEEGIYFAKDNK 178 Query: 183 PTPLEDLSGVTVKRGFLEDSNAN 205 + + V +E +N N Sbjct: 179 TIENKIMDDDRVYINVVELANYN 201 >gi|117928040|ref|YP_872591.1| flagellar hook-associated protein FlgK [Acidothermus cellulolyticus 11B] gi|117648503|gb|ABK52605.1| flagellar hook-associated protein FlgK [Acidothermus cellulolyticus 11B] Length = 463 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + L A A + L N++N T G+ + F + G++ + + V +G Sbjct: 7 SLSTALTALQAERKALEVTGQNIANASTSGYTRQRAVFQGIGGSVVPAMYSRSDGVGAGV 66 Query: 64 EY 65 Sbjct: 67 VV 68 >gi|190574257|ref|YP_001972102.1| flagellar hook-associated protein FlgK [Stenotrophomonas maltophilia K279a] gi|190012179|emb|CAQ45802.1| putative flagellar hook-associated protein [Stenotrophomonas maltophilia K279a] Length = 626 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + G A LA ++ L+T + N++N +T G+ KV F A + + V Sbjct: 1 MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNF-----ATADPQNYGYGTVG 55 Query: 61 SGKEYLS 67 +G Sbjct: 56 NGTRITD 62 >gi|260772272|ref|ZP_05881188.1| flagellar basal-body rod protein FlgC [Vibrio metschnikovii CIP 69.14] gi|260611411|gb|EEX36614.1| flagellar basal-body rod protein FlgC [Vibrio metschnikovii CIP 69.14] Length = 138 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 93 GFIYKPNVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQ 135 Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + + D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKETYKARHAVFGAELNKARYHRDPNV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVLG 70 >gi|153831692|ref|ZP_01984359.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01] gi|148872202|gb|EDL71019.1| flagellar hook-associated protein FlgK [Vibrio harveyi HY01] Length = 457 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T G+ + + V N + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVANINTPGYSRQQALTASVGDGKYNKLSPGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|269960122|ref|ZP_06174498.1| putative flagellar hook-associated protein 1 [Vibrio harveyi 1DA3] gi|269835093|gb|EEZ89176.1| putative flagellar hook-associated protein 1 [Vibrio harveyi 1DA3] Length = 457 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T G+ + + V N + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVANINTPGYSRQQALTASVGDGKYNKLSPGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|262173360|ref|ZP_06041037.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451] gi|261890718|gb|EEY36705.1| flagellar hook-associated protein FlgK [Vibrio mimicus MB-451] Length = 457 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T GF + + V G + + + Sbjct: 1 MNIVNIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYENHRPGMGVEVN 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SVRRITDQ 68 >gi|114566383|ref|YP_753537.1| flagellar basal body rod protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337318|gb|ABI68166.1| flagellar basal body rod protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 155 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI T+ + + +I+ + + A+ Sbjct: 116 NVNIVEEMINMISATRAYEANAQVIEATKSIAMRAL 151 Score = 43.1 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT------VG-FRTIKVKFS 42 S + + A R+ T+A NM+N +T G +R V F Sbjct: 4 LNSIDTSASGLTAQRLRMDTIASNMANVETTRVDNRTGPYRRQVVVFE 51 >gi|20807892|ref|NP_623063.1| flagellar basal body protein [Thermoanaerobacter tengcongensis MB4] gi|20516457|gb|AAM24667.1| Flagellar basal body protein [Thermoanaerobacter tengcongensis MB4] Length = 131 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 A R + +A+N++N DT F+ +VKF E++ N Sbjct: 11 GLYAATVRSNVIANNIANVDTPNFKRSEVKFEEILQEALNG 51 >gi|325274792|ref|ZP_08140821.1| flagellar hook-associated protein FlgK [Pseudomonas sp. TJI-51] gi|324100073|gb|EGB97890.1| flagellar hook-associated protein FlgK [Pseudomonas sp. TJI-51] Length = 680 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +IGL+ A + LS ++N++N T G+ + + A + F+ Sbjct: 1 MSSLISIGLSGLNASQAALSVTSNNIANAATSGYSRQQT-----LQAAGPSHNIGAGFLG 55 Query: 61 SGKEYLS 67 +G Sbjct: 56 TGTTLAD 62 >gi|256833255|ref|YP_003161982.1| flagellar hook-associated protein FlgK [Jonesia denitrificans DSM 20603] gi|256686786|gb|ACV09679.1| flagellar hook-associated protein FlgK [Jonesia denitrificans DSM 20603] Length = 463 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 24/67 (35%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + + L++ A + N++N +T G+ + + V + + + + +G Sbjct: 5 SGLSTALSSLNAQRAAMEITGQNIANVNTPGYTRQRADMTPVSAGQTASLFSQGAKIGNG 64 Query: 63 KEYLSKE 69 Sbjct: 65 VRITDIS 71 Score = 38.5 bits (89), Expect = 0.90, Method: Composition-based stats. Identities = 2/39 (5%), Positives = 15/39 (38%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 ++ E ++ + + + ++ ++ + + I Sbjct: 421 VDTDEETVNLLSYQRAYQAAARVMTTVDEMLDQLINRTG 459 >gi|150021011|ref|YP_001306365.1| flagellar basal-body rod protein FlgC [Thermosipho melanesiensis BI429] gi|149793532|gb|ABR30980.1| flagellar basal-body rod protein FlgC [Thermosipho melanesiensis BI429] Length = 137 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+++ N N + EM MI+ + + + T + + + A++ Sbjct: 92 GYVKLPNVNVVREMVDMINAQRAYEANVTAFNTTKAMINSALQ 134 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 I A R+ + +N++N++T G +R F E++ ++ ++ Sbjct: 5 NIMTIAATGMSAQRLRIDVITNNLANSETTRTEKGEPYRRKVPVFQELLRNVRGRLENGG 64 Query: 57 SFV 59 V Sbjct: 65 VVV 67 >gi|83647167|ref|YP_435602.1| flagellar hook-associated protein [Hahella chejuensis KCTC 2396] gi|83635210|gb|ABC31177.1| Flagellar hook-associated protein [Hahella chejuensis KCTC 2396] Length = 892 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 NIGL A + L+T +N+SN +T G+ +V+F + Sbjct: 4 NVINIGLTGLKASQTALATTGNNVSNANTEGYSRQRVEFEATPSQFIGAGYLGTGVGVAD 63 Query: 63 KEYLSKE 69 ++ + Sbjct: 64 ISRMTNQ 70 >gi|331006032|ref|ZP_08329374.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium IMCC1989] gi|330420161|gb|EGG94485.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium IMCC1989] Length = 140 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ F +++ ++ M A+ Sbjct: 101 NVNVVEEMTNMISASRSFQINVEVMNSAKQMMQRALT 137 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 7/79 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 + F+I + A RL+T A N++N D +R F+ + + D + Sbjct: 4 DSVFSIAGSGMNAQSLRLNTTASNLANADAAASSIDETYRGRHPVFASLKDTLSMDSNGN 63 Query: 56 ISFVASGKEYLSKEVGSFI 74 S V G + + Sbjct: 64 AS-VGVGVLGIVESDAPLQ 81 >gi|332525068|ref|ZP_08401248.1| flagellar basal-body rod protein FlgC [Rubrivivax benzoatilyticus JA2] gi|332108357|gb|EGJ09581.1| flagellar basal-body rod protein FlgC [Rubrivivax benzoatilyticus JA2] Length = 139 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 15/106 (14%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK------- 195 G G+ + +V+ L S + + G V Sbjct: 36 GPDGQAYKARQVVFQTALMDAGADP------ASAAGVRVSTIREDASPGRRVHDPKHPAA 89 Query: 196 --RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N++ EM MI ++ + + +++ + + + ++ Sbjct: 90 DAEGYVTFSNVNAVQEMVDMISASRSYQNNVEVMNTAKTLLQKTLQ 135 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 7/77 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M F++ +A A QRL+ VA N++N DTV ++ +V F + D Sbjct: 3 MFRIFDVSGSAVSAQSQRLNVVASNLANADTVAGPDGQAYKARQVVFQTALMDAGADPAS 62 Query: 55 KISFVASGKEYLSKEVG 71 + V G Sbjct: 63 A-AGVRVSTIREDASPG 78 >gi|260767771|ref|ZP_05876706.1| flagellar basal-body rod protein FlgC [Vibrio furnissii CIP 102972] gi|260617280|gb|EEX42464.1| flagellar basal-body rod protein FlgC [Vibrio furnissii CIP 102972] gi|315179397|gb|ADT86311.1| flagellar basal-body rod protein FlgC [Vibrio furnissii NCTC 11218] Length = 138 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 93 GYIYKPNVNVMEEMANMISASRSYQTNVQVADASKQMLLRTLQ 135 Score = 36.6 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + + + D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSKARYNRDPNV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVLG 70 >gi|254443396|ref|ZP_05056872.1| flagellar basal-body rod protein FlgC [Verrucomicrobiae bacterium DG1235] gi|198257704|gb|EDY82012.1| flagellar basal-body rod protein FlgC [Verrucomicrobiae bacterium DG1235] Length = 123 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 11/106 (10%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV-------- 194 G G Q+ V L + Q + G+ N+ ++ +G V Sbjct: 16 GPDGMPYQRQTVQFEAKLMELGRDQNGKMQTAQGV--NVRDVVTDETNGPLVFNPGHPDA 73 Query: 195 -KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++G ++ N N +EM +I ++ + + ++ +++ +A+R Sbjct: 74 DEKGMVQLPNVNLTHEMVDLISASRSYEANLQVVRTSKQMAQQALR 119 >gi|194365674|ref|YP_002028284.1| flagellar hook-associated protein FlgK [Stenotrophomonas maltophilia R551-3] gi|194348478|gb|ACF51601.1| flagellar hook-associated protein FlgK [Stenotrophomonas maltophilia R551-3] Length = 626 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + G A LA ++ L+T + N++N +T G+ KV F A + + V Sbjct: 1 MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNF-----ATADPQNYGYGTVG 55 Query: 61 SGKEYLS 67 +G Sbjct: 56 NGTRITD 62 >gi|291613036|ref|YP_003523193.1| flagellar basal-body rod protein FlgC [Sideroxydans lithotrophicus ES-1] gi|291583148|gb|ADE10806.1| flagellar basal-body rod protein FlgC [Sideroxydans lithotrophicus ES-1] Length = 134 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 12/93 (12%) Query: 147 EISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANS 206 + G+V + + +V ++ P PL D +G++ N N Sbjct: 51 TVPITGQVGEGVKVAAVVEDNSPMKTVYD------PKNPLADG------QGYVTMPNVNP 98 Query: 207 MYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + EM MI ++ + + +++ ++ + + + Sbjct: 99 VDEMVNMISASRSYQNNVDVLNTSKTLLTKTLT 131 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFSEVVGAIKNDIDQKI 56 FNI +A A QRL+ VA N++N D+ G ++ +V FS V + K+ Sbjct: 5 NIFNIAGSAMTAQSQRLNVVASNLANVDSATGPDGKPYKAKQVVFSTVPITGQVGEGVKV 64 Query: 57 SFV 59 + V Sbjct: 65 AAV 67 >gi|149375027|ref|ZP_01892800.1| Flagellar hook-associated protein [Marinobacter algicola DG893] gi|149360916|gb|EDM49367.1| Flagellar hook-associated protein [Marinobacter algicola DG893] Length = 682 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M NIGL L + L+T +N++N +T G+ +V+F ++ V Sbjct: 1 MAGLINIGLTGILGHQAALNTTGNNITNANTPGYSRQEVQFE-----TQSAQRTGAGSVG 55 Query: 61 SGKEYLS 67 +G + Sbjct: 56 TGVSITN 62 >gi|15596275|ref|NP_249769.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa PAO1] gi|107100523|ref|ZP_01364441.1| hypothetical protein PaerPA_01001548 [Pseudomonas aeruginosa PACS2] gi|116049007|ref|YP_792191.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa UCBPP-PA14] gi|152984084|ref|YP_001349652.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa PA7] gi|218892958|ref|YP_002441827.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa LESB58] gi|254234214|ref|ZP_04927537.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa C3719] gi|254239436|ref|ZP_04932758.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa 2192] gi|296390558|ref|ZP_06880033.1| flagellar basal body rod protein FlgC [Pseudomonas aeruginosa PAb1] gi|313106033|ref|ZP_07792292.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa 39016] gi|9946994|gb|AAG04467.1|AE004539_9 flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa PAO1] gi|115584228|gb|ABJ10243.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa UCBPP-PA14] gi|126166145|gb|EAZ51656.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa C3719] gi|126192814|gb|EAZ56877.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa 2192] gi|150959242|gb|ABR81267.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa PA7] gi|218773186|emb|CAW28998.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa LESB58] gi|310878794|gb|EFQ37388.1| flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa 39016] Length = 146 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V ++S + P P D + G++ N N + EM MI ++ F + ++ Sbjct: 78 GIVEDQSSLMPRYEPNHPAADAN------GYVYYPNVNVVEEMADMISASRAFQTNAEMM 131 Query: 228 DENEKSMLEAIR 239 + ++ M + + Sbjct: 132 NTAKQMMQKVLT 143 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 FNI + A RL+TVA N++N +TV +R FS + + D Sbjct: 7 FNIAGSGMSAQSTRLNTVASNIANAETVSSSVDKTYRARHPVFSTMFQQAQGDSGS 62 >gi|300311350|ref|YP_003775442.1| flagellar basal-body rod protein [Herbaspirillum seropedicae SmR1] gi|300074135|gb|ADJ63534.1| Flagellar basal-body rod protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM MI ++ + + ++ + +++ + Sbjct: 89 GYVAMPNVNPVEEMVNMISASRAYQTNVETMNTAKAMLVKTLT 131 Score = 42.7 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTD-------TVGFRTIKVKFSEVVGAIKNDIDQK 55 FN+ +A A QRL+ A N++N D T ++ +V F + D K Sbjct: 5 NIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTP-YKAKQVVFQAIPVGGVKDSGVK 63 Query: 56 ISFV 59 ++ V Sbjct: 64 VAAV 67 >gi|296531743|ref|ZP_06894568.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC 49957] gi|296267926|gb|EFH13728.1| flagellar hook-associated protein FlgK [Roseomonas cervicalis ATCC 49957] Length = 485 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGF-RTIKVKFSEVVGAIKNDIDQKIS 57 + + L++ A +++ + +++N++N +T G+ R + +V I + +D I+ Sbjct: 6 ALSNALSSLAAEQRQAAILSNNIANANTPGYVRRDMPRSERLVAGIGSGVDTAIT 60 >gi|45659169|ref|YP_003255.1| hypothetical protein LIC13350 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602415|gb|AAS71892.1| FlgG [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 283 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 40/205 (19%) Query: 20 STVADNMS-------------NTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 ++DN+S N T G+++ F++ + + I+ Sbjct: 18 DLISDNLSLLEEYKLLHSDLSNIKTYGYKS---YFNDRLNKAEAKINNI----------- 63 Query: 67 SKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLD 125 G +T + + A+ G +F + G I TR ++ + LV+ Y + Sbjct: 64 ---QGILKTTKSRFNCAILGFGFFKIRLSNGLIGYTRQCELRLNKEFELVNKQ--YSFYN 118 Query: 126 MASVPIQIPQKDEIFNVGEKGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPN 180 +P + F + IS + ++ + Y VD E + + Sbjct: 119 KIFMPREFDSD--TFKIHLDKSISIETYKKEKLIVGKLLTYKVDPELLEYYEEGIYFAKD 176 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNAN 205 + + V +E +N N Sbjct: 177 NKTIENKIMDDDRVYINVVELANYN 201 >gi|239817167|ref|YP_002946077.1| flagellar basal-body rod protein FlgC [Variovorax paradoxus S110] gi|239803744|gb|ACS20811.1| flagellar basal-body rod protein FlgC [Variovorax paradoxus S110] Length = 138 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI ++ + + +++ + M++ + Sbjct: 93 GYVAMPNVNVVEEMTNMISASRSYQANVEVLNTAKTLMVKTL 134 Score = 41.6 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 F++ +A A QR++ A N++N ++V +R +V F ++ K Sbjct: 8 MNIFSVAGSAMAAQSQRMNVTASNLANAESVAGPDGKPYRAKQVVFEVDASGQQDIGGVK 67 Query: 56 ISFV 59 ++ V Sbjct: 68 VAGV 71 >gi|217077497|ref|YP_002335215.1| flagellar basal-body rod protein FlgC [Thermosipho africanus TCF52B] gi|217037352|gb|ACJ75874.1| flagellar basal-body rod protein FlgC [Thermosipho africanus TCF52B] Length = 137 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+++ N N + EM MI+ + + + T + + + A++ Sbjct: 92 GYVKLPNVNVVREMVDMINAQRAYEANVTAFNTTKAMINSALQ 134 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 I A R+ +++N++N++T G +R F E++ I ++ Sbjct: 5 NIMTISATGMSAQRLRIDVISNNLANSETTRTENGEPYRRKVPVFQELLRNINGRLENGG 64 Query: 57 SFV 59 V Sbjct: 65 VVV 67 >gi|124268256|ref|YP_001022260.1| flagellar basal body rod protein [Methylibium petroleiphilum PM1] gi|124261031|gb|ABM96025.1| flagellar basal body rod protein [Methylibium petroleiphilum PM1] Length = 138 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M FN+ +A A QRL+ VA N++N DTV ++ +V F + + Sbjct: 3 MLNIFNVSGSAVSAQSQRLNVVASNLANADTVAGPDGKAYKARQVVFQTLPFQQPGEAGT 62 Query: 55 KISFVASGKEYLSKEVG 71 + V + G Sbjct: 63 A-AGVQVSQVTEDNAPG 78 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 25/43 (58%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N++ EM MI ++ + + +++ + +L+ ++ Sbjct: 93 GYVTYSNVNAVEEMVNMISASRSYQNNIEVMNTAKTLLLKTLQ 135 >gi|238927421|ref|ZP_04659181.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] gi|238884703|gb|EEQ48341.1| flagellar basal body rod protein [Selenomonas flueggei ATCC 43531] Length = 139 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 20/35 (57%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 A A R +++N++N +T FR V+F +++ Sbjct: 17 ALSAANLRHEVLSNNIANVNTPYFRRSHVRFEDLL 51 >gi|94500239|ref|ZP_01306772.1| flagellar basal-body rod protein FlgC [Oceanobacter sp. RED65] gi|94427538|gb|EAT12515.1| flagellar basal-body rod protein FlgC [Oceanobacter sp. RED65] Length = 148 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 5/37 (13%), Positives = 16/37 (43%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM M+ ++ + ++ ++ + + Sbjct: 109 NVNIVEEMTDMMSSSRSYQMNVEMMKTAKQMLQRTLT 145 Score = 41.2 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEV 44 FN+ A RL+T A N++N +TV +R K F + Sbjct: 5 NVFNVAGTGMNAQSVRLNTTASNIANAETVSSSIDETYRARKPWFQAL 52 >gi|73539448|ref|YP_299815.1| flagellar basal-body rod protein FlgC [Ralstonia eutropha JMP134] gi|72122785|gb|AAZ64971.1| Flagellar basal-body rod protein FlgC [Ralstonia eutropha JMP134] Length = 135 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM MI ++ + + +++ + ML+ + Sbjct: 90 GYVVMPNVNPVEEMVNMISASRSYQANVEVLNSAKNMMLKTLT 132 Score = 39.3 bits (91), Expect = 0.53, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDID 53 F++ +A A QR++ A N++N D+V +RT +V F ++D+ Sbjct: 4 MNIFDVAGSAMAAQSQRMNVTASNLANADSVVSPDGQAYRTKQVIFGMAPTPGQSDVG 61 >gi|34498342|ref|NP_902557.1| flagellar basal-body rod protein flgC [Chromobacterium violaceum ATCC 12472] gi|34104196|gb|AAQ60555.1| flagellar basal-body rod protein flgC [Chromobacterium violaceum ATCC 12472] Length = 136 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N N + EM MI ++ + + +++ + + + ++ Sbjct: 82 PGNPLADER------GYVTMPNVNVVEEMADMIAASRAYQNNVEMMNTAKSLLQKTLQ 133 Score = 40.0 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG--FRTIKVKFSEVVGAIKNDIDQKI 56 FNI +A A RL+ VA N++N + G ++ V F+ V + ++ Sbjct: 5 NLFNISGSALSAQSMRLNVVASNLANAESATSSTGQPYKGRHVVFTAV---PVDAAQPQV 61 Query: 57 SFVASGKEYLSKEVGSFI-STGTEL 80 + V + G L Sbjct: 62 AGVRVTSVVEDQSPPRLKYEPGNPL 86 >gi|85858815|ref|YP_461017.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] gi|85721906|gb|ABC76849.1| flagellar basal-body rod protein [Syntrophus aciditrophicus SB] Length = 143 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++G + N N M EM MI ++ + + T D + L+ + Sbjct: 96 QQGNVAMPNVNVMMEMTDMITASRAYEACVTAFDATKNMALKTL 139 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSE 43 TSF I + A ++ +A N++N T ++ FS Sbjct: 4 LTSFRICSSGFAAQRAKMDVIASNLANVSTTSTPEGGPYKRKVAIFSS 51 >gi|260893878|ref|YP_003239975.1| flagellar basal-body rod protein FlgB [Ammonifex degensii KC4] gi|260866019|gb|ACX53125.1| flagellar basal-body rod protein FlgB [Ammonifex degensii KC4] Length = 133 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN 50 A R +ADN++N DT GF+ V+F E + N Sbjct: 16 LDAAALRQRVIADNLANVDTPGFKKGVVRFEEELKRALN 54 >gi|331269279|ref|YP_004395771.1| flagellar hook-associated protein 1 [Clostridium botulinum BKT015925] gi|329125829|gb|AEB75774.1| flagellar hook-associated protein 1 [Clostridium botulinum BKT015925] Length = 647 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ N+G A + L + N++N++T G+ + +D ++ G Sbjct: 6 STLNVGKRGLYAQQGALDVTSHNIANSNTEGYTRQRALMETTRPFGMPAMDNQVGPGQIG 65 Query: 63 KEY 65 Sbjct: 66 TGV 68 Score = 41.6 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 16/111 (14%) Query: 142 VGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK--RGFL 199 V + G+++ T+GL ++ ++ +S + +++ + +G L Sbjct: 540 VDDNGKLTDD----ITLGLDTIKGDINGMKI-DSYFKDAVDKLGVQEQEAQRIVKNQGAL 594 Query: 200 --------ED-SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E S + EM ++ + + +I ++ + I + Sbjct: 595 LKEFSQRRESISGVSLNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGL 645 >gi|51894142|ref|YP_076833.1| flagella basal body rod protein [Symbiobacterium thermophilum IAM 14863] gi|51857831|dbj|BAD41989.1| flagella basal body rod protein [Symbiobacterium thermophilum IAM 14863] Length = 119 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVASGKEYLS 67 A A R +A+N++N T GF+ +V F + A D DQ V + + Sbjct: 14 AIDAASLRQRVLANNLANAMTPGFKRSRVDFETELARALAKGGDPDQVRPTVVRETDSIG 73 Query: 68 KEVGS 72 + G+ Sbjct: 74 RPDGN 78 >gi|220929470|ref|YP_002506379.1| flagellar basal-body rod protein FlgC [Clostridium cellulolyticum H10] gi|219999798|gb|ACL76399.1| flagellar basal-body rod protein FlgC [Clostridium cellulolyticum H10] Length = 147 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM MI T+ + + T ++ + L+A+ Sbjct: 102 GYVNMPNVDIVTEMVNMISATRSYEANVTSVNATKSMALKAL 143 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 ++ +I + A R+ T++ N++N +T G +R V F E Sbjct: 5 SALDISASGLTAQRVRMDTISQNIANANTTRTTDGTPYRRRDVVFEE 51 >gi|269796409|ref|YP_003315864.1| flagellar hook-associated protein FlgK [Sanguibacter keddieii DSM 10542] gi|269098594|gb|ACZ23030.1| flagellar hook-associated protein FlgK [Sanguibacter keddieii DSM 10542] Length = 475 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + + L++ + Q L N++N +T G+ +V V + + + V +G Sbjct: 5 SGLSTALSSLITQRQALEVAGQNLANINTPGYTRQRVDMQSVSAGQGATMFSQGNQVGNG 64 Query: 63 KEYL 66 + + Sbjct: 65 VQAV 68 >gi|119469947|ref|ZP_01612752.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Alteromonadales bacterium TW-7] gi|119446657|gb|EAW27930.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Alteromonadales bacterium TW-7] Length = 135 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 8/82 (9%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL---SK 68 L QR +A N++N DT G++ + F+ + A K+ + V + ++++ ++ Sbjct: 16 MLIRSQRAEVLASNIANADTPGYKAKDINFASALKAAKSHQQSGNTMVTTNEKHIGGGTR 75 Query: 69 EVGS--FISTGTELDFALEGDA 88 VG T + D GD Sbjct: 76 SVGGDELFRTPNQTD---TGDG 94 >gi|326204628|ref|ZP_08194484.1| flagellar basal-body rod protein FlgC [Clostridium papyrosolvens DSM 2782] gi|325985195|gb|EGD46035.1| flagellar basal-body rod protein FlgC [Clostridium papyrosolvens DSM 2782] Length = 147 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM MI T+ + + T ++ + L+A+ Sbjct: 102 GYVNMPNVDIVTEMVNMISATRSYEANVTSVNATKSMALKAL 143 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 ++ +I + A R+ T++ N++N +T G +R +V F E Sbjct: 5 SALDISASGLTAQRVRMDTISQNIANANTTRTADGTPYRRREVVFEE 51 >gi|121997313|ref|YP_001002100.1| flagellar hook-associated protein FlgK [Halorhodospira halophila SL1] gi|121588718|gb|ABM61298.1| flagellar hook-associated protein FlgK [Halorhodospira halophila SL1] Length = 685 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M G++ A ++ L+T + N+SN +T G+ +V+ + + Sbjct: 1 MVDILQTGISGLRASQRGLATTSHNISNVNTDGYSRQRVEQDTSIPHYHSRGAIGTGTQV 60 Query: 61 SGKEYLSKE 69 + LS++ Sbjct: 61 QTIQRLSED 69 >gi|212637783|ref|YP_002314308.1| flagellar basal-body rod protein FlgC [Shewanella piezotolerans WP3] gi|212559267|gb|ACJ31721.1| Flagellar basal-body rod protein FlgC [Shewanella piezotolerans WP3] Length = 139 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +G++ SN N++ EM M+ ++ F + +++ +SM + + + + Sbjct: 92 QGYVAYSNVNTVEEMADMMAASRSFETSVEVMNRA-RSMQQGLLQLGA 138 Score = 39.6 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 16/84 (19%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISF 58 + I A A RL+TVA N++N FR +K FS + + Sbjct: 7 YQIAGAGMNAQTIRLNTVASNLANAGAAAESPDQAFRALKPVFSTIYKQTQEG------- 59 Query: 59 VASGKEYLSKEVGSFISTGTELDF 82 EV + + T LD Sbjct: 60 ---QVAGAHVEVSAIVETDAPLDL 80 >gi|157376218|ref|YP_001474818.1| flagellar basal body rod protein FlgC [Shewanella sediminis HAW-EB3] gi|157318592|gb|ABV37690.1| flagellar basal-body rod protein FlgC [Shewanella sediminis HAW-EB3] Length = 138 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDAPLQKEYSPDHPMADGD------GFIYKPNVNVMEEMANMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAIR 239 + + + + +R Sbjct: 123 AEAAKSMLQQTLR 135 Score = 40.0 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 9/92 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 FN+ + A RL+T A N++N D V +R F + + + Sbjct: 7 FNVAGSGMSAQSVRLNTTASNIANADAVSSSVDETYRARHPIFEAEMAKASHQQQSSQAV 66 Query: 59 VASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 G + +GD + Sbjct: 67 AVKGIVESDA---PLQKEYSPDHPMADGDGFI 95 >gi|222053600|ref|YP_002535962.1| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32] gi|221562889|gb|ACM18861.1| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32] Length = 146 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G++ N N + EM MI T+ + + T + L+ + + Sbjct: 101 GYVALPNVNVVEEMADMIAATRTYEANVTAAQAAKSMALKTL-ELG 145 Score = 39.3 bits (91), Expect = 0.53, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 TS +I +A A R++ ++ N++N + G ++ F+ Sbjct: 5 TSMDISASALTAERTRMNLISSNLANAGSTRTAEGGPYKRKDAVFA 50 >gi|258622494|ref|ZP_05717516.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM573] gi|258585194|gb|EEW09921.1| putative flagellar hook-associated protein 1 [Vibrio mimicus VM573] Length = 457 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N +T GF + + V G + + Sbjct: 1 MNIVNIALSGLNANRVALDVTAQNVANINTPGFSRQQAIMTSVGGGKYEKHSPGMGVEVN 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SVRRITDQ 68 >gi|119469948|ref|ZP_01612753.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Alteromonadales bacterium TW-7] gi|119446658|gb|EAW27931.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Alteromonadales bacterium TW-7] Length = 143 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI ++ + + + D ++ + + + Sbjct: 97 GYIYKPNVNVVEEMANMISASRSYETNVQVADAAKQMLSKTL 138 Score = 40.4 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKF-SEVVGAIKNDIDQK 55 F+I + A RL+T A N+SN +T+ +R + F +E+ A ++ + + Sbjct: 5 NVFDIAGSGMSAQNVRLNTTASNISNANTISSSQDKTYRARQPVFAAELTKASESVSNNQ 64 Query: 56 ISFVASGKEYLSKEVGSFI 74 S V + + Sbjct: 65 GSSVGVKVLGIVESSAPLQ 83 >gi|295706287|ref|YP_003599362.1| flagellar basal-body rod protein FlgC [Bacillus megaterium DSM 319] gi|294803946|gb|ADF41012.1| flagellar basal-body rod protein FlgC [Bacillus megaterium DSM 319] Length = 149 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 25/43 (58%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G+++ N + + EM +I T+ + + T+ + N+ + +A+ Sbjct: 103 QGYVQMPNVDPLKEMTDLISATRSYEANVTVFNTNKSILTKAL 145 Score = 36.2 bits (83), Expect = 4.4, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 + NI +A A R+ V+ NM+N +T Sbjct: 5 QNMNITSSALTANRLRMDVVSSNMANAETT 34 >gi|294084412|ref|YP_003551170.1| flgK flagellar hook-associated protein 1 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663985|gb|ADE39086.1| FlgK flagellar hook-associated protein 1 [Candidatus Puniceispirillum marinum IMCC1322] Length = 1402 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + F+IG + + Q L+ N++N +T G++ + E+ G+ + ++ Sbjct: 1 MASLFDIGKSGLSSYRQALAVTGQNIANINTDGYKRREANLEEIQGSTGS-VNSVPDQSG 59 Query: 61 SGKEYLS 67 G Sbjct: 60 LGVRVTD 66 >gi|255654319|ref|ZP_05399728.1| putative flagellar hook-associated protein [Clostridium difficile QCD-23m63] Length = 125 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N + + ++ + T++ N+SN DT G+ + +F+ + I G Sbjct: 8 LNTANSGMNSHQKAIQTISHNISNLDTEGYSRQRTEFATNSPMYMPSLSNSIGRGQLGTG 67 Query: 65 YLSKEV 70 +V Sbjct: 68 VHVTDV 73 >gi|255598721|ref|XP_002537067.1| Flagellar basal-body rod protein flgC, putative [Ricinus communis] gi|223517602|gb|EEF25316.1| Flagellar basal-body rod protein flgC, putative [Ricinus communis] Length = 121 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N EM MI ++ + + ++ + +L+ + Sbjct: 76 GYITMPNVNVTEEMVNMISASRAYQNNVETMNAAKTMLLKTLN 118 >gi|308050374|ref|YP_003913940.1| flagellar basal-body rod protein FlgC [Ferrimonas balearica DSM 9799] gi|307632564|gb|ADN76866.1| flagellar basal-body rod protein FlgC [Ferrimonas balearica DSM 9799] Length = 139 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM MI ++ + + + + + +R Sbjct: 93 GYIYKPNVNVVEEMANMISASRSYQANVQVASAAKDMAQQTLR 135 Score = 42.0 bits (98), Expect = 0.082, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+ + A RL+T A N++N ++V +R + F + +Q + Sbjct: 7 FDTAGSGMSAQSVRLNTTASNIANANSVSSSAGETYRARQPIFEAALQQASGYQNQSVPV 66 Query: 59 VASG 62 +G Sbjct: 67 QVAG 70 >gi|298529920|ref|ZP_07017322.1| flagellar hook-associated protein FlgK [Desulfonatronospira thiodismutans ASO3-1] gi|298509294|gb|EFI33198.1| flagellar hook-associated protein FlgK [Desulfonatronospira thiodismutans ASO3-1] Length = 701 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 N G A A + + T +N++N +T G+R +V+ E + A+ Q + V + + Sbjct: 8 MNSGRTALFANQSAIQTTGNNIANVNTEGYRRREVRLEEAM-ALDTAPGQIGTGVNAKEV 66 Query: 65 YLSKEVGSFIST 76 + + SFI T Sbjct: 67 FRHFD--SFIET 76 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 15/39 (38%) Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 E S N EM +I + + +I ++ M + Sbjct: 659 EKSGVNLDEEMSNLIKYQHSYQAAARMISTADQMMQTLL 697 >gi|28211376|ref|NP_782320.1| flagellar hook-associated protein 1 [Clostridium tetani E88] gi|28203817|gb|AAO36257.1| flagellar hook-associated protein 1 [Clostridium tetani E88] Length = 579 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 24/61 (39%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 ++G + A ++ + + NM+N +T G+ + + ++ + G+ Sbjct: 8 LHVGKSGIFANQKAIDVTSHNMANANTEGYSRQRAELQTERPFCTPSMNNAVGAGQLGRG 67 Query: 65 Y 65 Sbjct: 68 V 68 Score = 38.5 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 5/41 (12%), Positives = 14/41 (34%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + E +I + + +I ++ + I + Sbjct: 537 ASGVSIDEETTNLIQFQHAYQANAKIISTVDELLDVVINGL 577 >gi|24374760|ref|NP_718803.1| flagellar basal body rod protein FlgC [Shewanella oneidensis MR-1] gi|24349426|gb|AAN56247.1|AE015762_4 flagellar basal-body rod protein FlgC [Shewanella oneidensis MR-1] Length = 138 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDKPLLKEYSPDHPMADGD------GFIYKPNVNVMEEMADMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAI 238 + + + + + Sbjct: 123 AEAAKSMLQQTL 134 Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 9/94 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 F++ + A RL+T A N++N D+V +R+ F + ++ Sbjct: 5 NIFDVAGSGMSAQSLRLNTTASNIANADSVSSSIDKTYRSRHPIFEAEMAKAQSQQQASQ 64 Query: 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWF 90 G K + + +GD + Sbjct: 65 GVAVKGIVESDK---PLLKEYSPDHPMADGDGFI 95 >gi|266621921|ref|ZP_06114856.1| flagellar basal-body rod protein FlgB [Clostridium hathewayi DSM 13479] gi|288866394|gb|EFC98692.1| flagellar basal-body rod protein FlgB [Clostridium hathewayi DSM 13479] Length = 118 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI-SFVAS 61 + GL A +Q N++N +T GF+ KV+F +V+ + + V + Sbjct: 10 RALQSGLDAMWLKQQ---VAGHNIANVETPGFKAKKVEFKQVLKEAADGSGPVYKAVVGT 66 Query: 62 GKEYLSKEVG-SFISTGTELDF 82 + ++ G + ELD Sbjct: 67 DNDTEARPDGNNVQVEKEELDL 88 >gi|253998490|ref|YP_003050553.1| flagellar basal-body rod protein FlgC [Methylovorus sp. SIP3-4] gi|313200565|ref|YP_004039223.1| flagellar basal-body rod protein flgc [Methylovorus sp. MP688] gi|253985169|gb|ACT50026.1| flagellar basal-body rod protein FlgC [Methylovorus sp. SIP3-4] gi|312439881|gb|ADQ83987.1| flagellar basal-body rod protein FlgC [Methylovorus sp. MP688] Length = 134 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 21/45 (46%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ N N EM MI ++ + + ++ + +L+ + Sbjct: 87 AQGYVTMPNVNVTEEMVNMISASRAYQNNVETMNAAKTMLLKTLT 131 Score = 37.3 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTD--TVG----FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A QRL+ VA N++N D T ++ +V FS K+ Sbjct: 5 NVFNVSGSAMSAQSQRLNAVASNLANADSATSANGQPYKAKQVVFSATPTNNAAVSGVKV 64 Query: 57 SFV 59 V Sbjct: 65 QQV 67 >gi|304310784|ref|YP_003810382.1| Flagellar basal-body rod protein FlgB [gamma proteobacterium HdN1] gi|301796517|emb|CBL44725.1| Flagellar basal-body rod protein FlgB [gamma proteobacterium HdN1] Length = 135 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A +R +++N++N DT GFR V F +V+G + D S V + ++ Sbjct: 15 AMELRGRRAEILSNNLANGDTPGFRARDVDFKDVLGGMLGDPSATPSPVTTQSGHVQ 71 >gi|330949134|gb|EGH49394.1| flagellar basal body rod protein FlgG [Pseudomonas syringae pv. pisi str. 1704B] Length = 47 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Query: 101 TRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK 151 +RDG F + +G +V+A+G I +PQ + F VG+ G +S Sbjct: 1 SRDGTFHLDANGQIVTANGY-----ALEPAIVVPQNAQTFTVGQDGTVSVT 46 >gi|312884828|ref|ZP_07744520.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC BAA-2122] gi|309367480|gb|EFP95040.1| flagellar hook-associated protein FlgK [Vibrio caribbenthicus ATCC BAA-2122] Length = 457 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 24/68 (35%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NIGL A L A N++N +T G+ + + V G + + Sbjct: 1 MNLVNIGLTGLNASRVALDVTAQNVANINTPGYSRQQALMASVGGPKHDKLSAGAGVEVP 60 Query: 62 GKEYLSKE 69 +S E Sbjct: 61 SIRRISDE 68 >gi|87119678|ref|ZP_01075575.1| Flagellar basal-body rod protein FlgC [Marinomonas sp. MED121] gi|86165154|gb|EAQ66422.1| Flagellar basal-body rod protein FlgC [Marinomonas sp. MED121] Length = 149 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N + EM M+ ++ F + +++ + M + + Sbjct: 102 SGYVYYSNVNPVEEMADMMSASRSFQTNVEVMNSAKSMMQKMLT 145 Score = 37.7 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDID 53 F I +A A RL+TVA N++N D+V +R K FS ++ Sbjct: 4 NNIFAISGSAMSAQTIRLNTVASNIANADSVASSEDQTYRARKPVFSTMMQESMRGYG 61 >gi|225181613|ref|ZP_03735054.1| flagellar basal-body rod protein FlgC [Dethiobacter alkaliphilus AHT 1] gi|225167721|gb|EEG76531.1| flagellar basal-body rod protein FlgC [Dethiobacter alkaliphilus AHT 1] Length = 136 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI T+ + + T ++ ++ L+A+ Sbjct: 96 NVNIVQEMVDMITATRAYEANVTALNASKNMFLKAL 131 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 9/70 (12%) Query: 1 MQ--TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVV-GAIKND 51 MQ + N+ + A RL +A+N++N T G ++ F+EV+ GA K+ Sbjct: 1 MQIFKAMNVSSSGLTAERFRLDLIANNIANAHTTRTEDGGPYQRKSAVFAEVMDGARKSG 60 Query: 52 IDQKISFVAS 61 ++ V+ Sbjct: 61 QGVRVQGVSV 70 >gi|289523576|ref|ZP_06440430.1| flagellar basal-body rod protein FlgC [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503268|gb|EFD24432.1| flagellar basal-body rod protein FlgC [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 136 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 N N + EM M+ T+ + + +++ ++ AI + S Sbjct: 96 NVNVVREMTDMMAATRAYEANLMVVESAKEIWGSAIDVLRS 136 Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDI 52 S I ++ A + ++ N++N +T G +R F+E + A + Sbjct: 5 DSLEIAGSSLTAHRLWMDLISQNLANVNTTRTQDGGPYRRKVPIFAERLEAAEKGA 60 >gi|260431752|ref|ZP_05785723.1| flagellar basal-body rod protein FlgC [Silicibacter lacuscaerulensis ITI-1157] gi|260415580|gb|EEX08839.1| flagellar basal-body rod protein FlgC [Silicibacter lacuscaerulensis ITI-1157] Length = 128 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-------EVVGAIKNDIDQ- 54 S + +A A RL V++N+SN DT G+R V F ++V A + +DQ Sbjct: 6 KSLEVTASALRAQAARLRHVSENISNADTPGYRRKTVPFEAVHKDGADLVQAGRVRLDQS 65 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALE 85 K+S + L+ E G + G+ +D +E Sbjct: 66 KLSRIYDPGHPLADESGHYQ--GSNVDLMIE 94 Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 148 ISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSM 207 + + G + G +D S+ P PL D + G + SN + M Sbjct: 47 VHKDGADLVQAGRVRLDQSK--------LSRIYDPGHPLAD------ESGHYQGSNVDLM 92 Query: 208 YEMGQMIHLTQKFNSITTLIDEN---EKSMLEAIRN 240 E+ + + + + D+ S++E +R Sbjct: 93 IEIADAREAQRSYEANLKMFDQARQMSSSLMELLRK 128 >gi|323705449|ref|ZP_08117024.1| flagellar basal-body rod protein FlgB [Thermoanaerobacterium xylanolyticum LX-11] gi|323535351|gb|EGB25127.1| flagellar basal-body rod protein FlgB [Thermoanaerobacterium xylanolyticum LX-11] Length = 136 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 A A E R +++N++N DT GF+ V F ++ N Sbjct: 15 ALDASELRNEVISNNIANVDTPGFKRSDVNFESILNDAINS 55 >gi|113969604|ref|YP_733397.1| flagellar basal body rod protein FlgC [Shewanella sp. MR-4] gi|114046836|ref|YP_737386.1| flagellar basal body rod protein FlgC [Shewanella sp. MR-7] gi|113884288|gb|ABI38340.1| flagellar basal-body rod protein FlgC [Shewanella sp. MR-4] gi|113888278|gb|ABI42329.1| flagellar basal-body rod protein FlgC [Shewanella sp. MR-7] Length = 138 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDKPLLKEYSPDHPMADAD------GFIYKPNVNVMEEMADMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAI 238 + + + + + Sbjct: 123 AEAAKSMLQQTL 134 Score = 35.8 bits (82), Expect = 6.0, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F++ + A RL+T A N++N D+V +R+ F + ++ Sbjct: 7 FDVAGSGMSAQSVRLNTTASNIANADSVSSSIDKTYRSRHPIFEAEMAKAQSQQQASQGV 66 Query: 59 VASG 62 G Sbjct: 67 AVKG 70 >gi|226944490|ref|YP_002799563.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] gi|226719417|gb|ACO78588.1| flagellar basal-body rod protein [Azotobacter vinelandii DJ] Length = 135 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 M F+I +A A QR++ A N++N D+VG +R +V F + + Sbjct: 3 MFNIFDIAGSALSAQSQRMNVTASNLANVDSVGSEDGQAYRAKQVLFESMARGRSDTGGV 62 Query: 55 KISFV 59 ++ V Sbjct: 63 RVVQV 67 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N ++EM MI ++ + + +++ +++ +L+ + Sbjct: 89 GYVSLPNVEPVHEMVNMIAASRSYQANVEVMNTSKQMLLKTLT 131 >gi|253573515|ref|ZP_04850858.1| flagellar basal-body rod protein FlgB [Paenibacillus sp. oral taxon 786 str. D14] gi|251847043|gb|EES75048.1| flagellar basal-body rod protein FlgB [Paenibacillus sp. oral taxon 786 str. D14] Length = 135 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 A A R +A+N++N DT F+ V F ++ A N + + + Sbjct: 14 TAIQAANLRQGVIANNIANVDTPYFKRSSVSFESMLQAEMNGNMPALQGRRTDVRHF 70 >gi|313497768|gb|ADR59134.1| FlgK [Pseudomonas putida BIRD-1] Length = 680 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +IGL+ A + LS ++N++N T G+ + V A + F+ Sbjct: 1 MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQT-----VQAAGPSHNIGAGFLG 55 Query: 61 SGKEYLS 67 +G Sbjct: 56 TGTTLAD 62 >gi|220913735|ref|YP_002489044.1| flagellar basal-body rod protein FlgB [Arthrobacter chlorophenolicus A6] gi|219860613|gb|ACL40955.1| flagellar basal-body rod protein FlgB [Arthrobacter chlorophenolicus A6] Length = 113 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Query: 1 MQTSFNIGL--AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 M S +A L R T+A+N++N +T ++ +V F + + A + S Sbjct: 1 MLESVTSAALASALDGLALRQRTIANNIANINTPNYKAKRVSFEDELAASVRRGNGHTSA 60 Query: 59 VASGKEYLSKEVGS 72 ++ G+ Sbjct: 61 SVEASLEPTQLNGN 74 >gi|153001474|ref|YP_001367155.1| flagellar basal body rod protein FlgC [Shewanella baltica OS185] gi|160876205|ref|YP_001555521.1| flagellar basal body rod protein FlgC [Shewanella baltica OS195] gi|151366092|gb|ABS09092.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS185] gi|160861727|gb|ABX50261.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS195] gi|315268395|gb|ADT95248.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS678] Length = 138 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDKPLLKEYSPDHPMADAD------GFIYKPNVNVMEEMADMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAI 238 + + + + + Sbjct: 123 AEAAKSMLQQTL 134 Score = 35.8 bits (82), Expect = 6.0, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F++ + A RL+T A N++N D+V +R+ F + ++ Sbjct: 7 FDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRSRHPIFEAEMAKAQSQQQASQGV 66 Query: 59 VASG 62 G Sbjct: 67 AVKG 70 >gi|88799029|ref|ZP_01114610.1| Flagellar hook-associated protein [Reinekea sp. MED297] gi|88778256|gb|EAR09450.1| Flagellar hook-associated protein [Reinekea sp. MED297] Length = 1025 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + + + A + L T N+SN +T G+ + V A N + + + ++ Sbjct: 1 MSLLSTAITGIKAHQTALETTGHNISNANTPGYSRQEA-----VMATNNPLFRGVGYIGQ 55 Query: 62 GKEYLS 67 G + Sbjct: 56 GVNIST 61 >gi|126175148|ref|YP_001051297.1| flagellar basal body rod protein FlgC [Shewanella baltica OS155] gi|125998353|gb|ABN62428.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS155] Length = 138 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDKPLLKEYSPDHPMADAD------GFIYKPNVNVMEEMADMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAI 238 + + + + + Sbjct: 123 AEAAKSMLQQTL 134 Score = 36.2 bits (83), Expect = 4.6, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F++ + A RL+T A N++N D+V +R F + ++ Sbjct: 7 FDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEAEMAKAQSQQQASQGV 66 Query: 59 VASG 62 G Sbjct: 67 AVKG 70 >gi|330830305|ref|YP_004393257.1| flagellar basal-body rod protein FlgC [Aeromonas veronii B565] gi|328805441|gb|AEB50640.1| Flagellar basal-body rod protein FlgC [Aeromonas veronii B565] Length = 139 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N + EM MI+ ++ + + + D +K + + ++ Sbjct: 93 GFIFKPNVNMVEEMADMINASRSYQTNVQVADSAKKMLQQTLQ 135 Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT--------DTVGFRTIKVKFSEVVGAIKNDIDQKI 56 F+I +A A RL+TVA NM+N +T + + F+ + +D + Sbjct: 7 FDIAGSAMSAQSVRLNTVASNMANADSVSSSVENT--YHARRPVFAAQLDQAMSDKQGSV 64 Query: 57 SFVASG 62 G Sbjct: 65 GVEVKG 70 >gi|307823529|ref|ZP_07653758.1| flagellar basal-body rod protein FlgC [Methylobacter tundripaludum SV96] gi|307735514|gb|EFO06362.1| flagellar basal-body rod protein FlgC [Methylobacter tundripaludum SV96] Length = 138 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 6/87 (6%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 KVI S G V +++ + P P+ + G++ SN N++ EM Sbjct: 55 KVINKQNATSKVNVLGVVEGQDAPVMEYAPNHPMANSD------GYIFKSNVNTVEEMAN 108 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 M+ ++ + + +++ ++ ML+ ++ Sbjct: 109 MMSASRSYQNNVDVLNTAKQMMLQTLK 135 >gi|170725953|ref|YP_001759979.1| flagellar basal body rod protein FlgC [Shewanella woodyi ATCC 51908] gi|169811300|gb|ACA85884.1| flagellar basal-body rod protein FlgC [Shewanella woodyi ATCC 51908] Length = 139 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + + + + + +R Sbjct: 94 GFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLR 136 Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N D+V +R F + + Sbjct: 6 NIFNVSGSGMSAQSVRLNTTASNIANADSVSSSIDETYRARHPIFEAEMAKASHQQQSSQ 65 Query: 57 SFVASG 62 S G Sbjct: 66 SVAVKG 71 >gi|26991070|ref|NP_746495.1| flagellar hook-associated protein FlgK [Pseudomonas putida KT2440] gi|24986104|gb|AAN69959.1|AE016634_8 flagellar hook-associated protein FlgK [Pseudomonas putida KT2440] Length = 680 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +IGL+ A + LS ++N++N T G+ + V A + F+ Sbjct: 1 MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQT-----VQAAGPSHNIGAGFLG 55 Query: 61 SGKEYLS 67 +G Sbjct: 56 TGTTLAD 62 >gi|222055648|ref|YP_002538010.1| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32] gi|221564937|gb|ACM20909.1| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32] Length = 139 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 N N + EM M+ T+ + + TT + ++A+ I S Sbjct: 99 NVNIVEEMADMVTATRAYEANTTAMKAGMDMQMKAL-EIGS 138 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQK 55 + I +A A R++ ++ N++N ++ G +R F+ V+ +++ Sbjct: 1 MDAMEISASALTAERTRMNLISSNLANANSTRTDEGGQYRRKDAVFATVLDGASANMEGG 60 Query: 56 ISFVASGKEYLSKEV 70 + + ++ Sbjct: 61 TEVIGVEVVNIIEDQ 75 >gi|157959904|ref|YP_001499938.1| flagellar basal-body rod protein FlgC [Shewanella pealeana ATCC 700345] gi|157844904|gb|ABV85403.1| flagellar basal-body rod protein FlgC [Shewanella pealeana ATCC 700345] Length = 139 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +G++ SN N++ EM M+ ++ F + +++ +SM + + + + Sbjct: 92 QGYVAYSNVNTVEEMADMMAASRSFETSVEVMNRA-RSMQQGLLQLGT 138 Score = 36.2 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 16/84 (19%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISF 58 + I A A RL+TVA N++N FR +K FS + + Sbjct: 7 YQIAGAGMNAQTIRLNTVASNLANAGAAAESPDQAFRALKPVFSTIYKQTQEG------- 59 Query: 59 VASGKEYLSKEVGSFISTGTELDF 82 EV + + + LD Sbjct: 60 ---ELAGAHVEVSAIVQSDAPLDL 80 >gi|46578934|ref|YP_009742.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str. Hildenborough] gi|46448346|gb|AAS95001.1| flagellar hook-associated protein FlgK, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311232792|gb|ADP85646.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris RCH1] Length = 698 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKI 56 FN+G A + + T +N++N +T G+ +V+F E + + Q + Sbjct: 7 FNLGWNALNGAQSAIQTTGNNIANVNTPGYSRQEVRFEEAPTLDKFGGQMGQGV 60 >gi|109899405|ref|YP_662660.1| flagellar basal-body rod protein FlgB [Pseudoalteromonas atlantica T6c] gi|109701686|gb|ABG41606.1| flagellar basal-body rod protein FlgB [Pseudoalteromonas atlantica T6c] Length = 133 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 14/93 (15%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV--------ASGKEYLSKE 69 R+ +A N++N +T G++ + F + + + +N +Q ++ G + Sbjct: 22 RMEVLAGNLANANTPGYKARDINFQDAMRSAQNSRNQNLTRTHENHIKGHMQGSGEVQFR 81 Query: 70 VGSFIST--GTELDFALEGDAWFALESPRGIIL 100 + + T G +D +E +A+ G+ Sbjct: 82 INNQPDTGDGNNVDVQVERNAFL----DNGLRY 110 >gi|78043872|ref|YP_359837.1| flagellar basal-body rod protein FlgB [Carboxydothermus hydrogenoformans Z-2901] gi|77995987|gb|ABB14886.1| flagellar basal-body rod protein FlgB [Carboxydothermus hydrogenoformans Z-2901] Length = 136 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 18/41 (43%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 A R +A N++N +T G+R V F E V N Sbjct: 15 GIDAATIRQQAIAHNIANVNTPGYRKEVVVFEEKVQEFLNQ 55 >gi|117919770|ref|YP_868962.1| flagellar basal body rod protein FlgC [Shewanella sp. ANA-3] gi|117612102|gb|ABK47556.1| flagellar basal-body rod protein FlgC [Shewanella sp. ANA-3] Length = 138 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V + + P P+ D GF+ N N M EM MI ++ + + Sbjct: 69 KGIVESDKPLLKEYSPDHPMADAD------GFIYKPNVNVMEEMADMISASRSYQMNVQV 122 Query: 227 IDENEKSMLEAI 238 + + + + + Sbjct: 123 AEAAKSMLQQTL 134 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 F++ + A RL+T A N++N D+V +R+ F + ++ Sbjct: 5 NIFDVAGSGMSAQSLRLNTTASNIANADSVSSSVDKTYRSRHPIFEAEMAKAQSQQQASQ 64 Query: 57 SFVASG 62 G Sbjct: 65 GVTVKG 70 >gi|300722684|ref|YP_003711974.1| flagellar basal-body rod cell-proximal protein [Xenorhabdus nematophila ATCC 19061] gi|297629191|emb|CBJ89787.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Xenorhabdus nematophila ATCC 19061] Length = 134 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 23/109 (21%) Query: 142 VGEKGEIS-----------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 VG GE G+ I + + V R E P PL D Sbjct: 35 VGPDGEPYRAKQVVFRVAAPAGQEIGGVRVSEVVDDPTPFRLE------YKPGNPLADEK 88 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N + + EM I ++ + + +++ + ML+ + Sbjct: 89 ------GYVRMPNVDVVGEMVNTISASRSYQANVEVLNTTKSIMLKTLT 131 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 + F+I +A A QRL+ A NM+N VG +R +V F A + + Sbjct: 4 LSIFDIASSALSAQSQRLNVSASNMANADSVVGPDGEPYRAKQVVFRVAAPAGQEIGGVR 63 Query: 56 ISFV 59 +S V Sbjct: 64 VSEV 67 >gi|120603465|ref|YP_967865.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris DP4] gi|120563694|gb|ABM29438.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris DP4] Length = 698 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKI 56 FN+G A + + T +N++N +T G+ +V+F E + + Q + Sbjct: 7 FNLGWNALNGAQSAIQTTGNNIANVNTPGYSRQEVRFEEAPTLDKFGGQMGQGV 60 >gi|260779341|ref|ZP_05888233.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC BAA-450] gi|260605505|gb|EEX31800.1| flagellar hook-associated protein FlgK [Vibrio coralliilyticus ATCC BAA-450] Length = 457 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N+SN +T G+ + + V G + + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVSNINTPGYSRQQALMASVGGTKHDKLSPGLGVEVT 60 Query: 62 GKEYLSKE 69 ++ E Sbjct: 61 SIRRVTDE 68 >gi|156973584|ref|YP_001444491.1| flagellar basal body rod protein FlgC [Vibrio harveyi ATCC BAA-1116] gi|156525178|gb|ABU70264.1| hypothetical protein VIBHAR_01287 [Vibrio harveyi ATCC BAA-1116] Length = 137 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ +L ++ Sbjct: 92 GYIYKPNVNVMEEMANMISASRAYQTNLQVADSSKQMLLRTLQ 134 Score = 36.2 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N D+V ++ F + D Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGDTVP 64 Query: 57 SFVAS 61 V Sbjct: 65 VKVMG 69 >gi|284041493|ref|YP_003391833.1| flagellar hook-associated protein FlgK [Conexibacter woesei DSM 14684] gi|283945714|gb|ADB48458.1| flagellar hook-associated protein FlgK [Conexibacter woesei DSM 14684] Length = 443 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG---AIKNDIDQKISFVA 60 L +A +Q L+T N++N +T GF + F + + + + Sbjct: 8 GLQTSLRGLIAHQQALNTTGHNVANANTPGFSRQEAIFGAMSALRLPTNSGTTGLGAQLG 67 Query: 61 SGKEYL 66 +G + L Sbjct: 68 TGVDVL 73 Score = 43.1 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 5/39 (12%), Positives = 13/39 (33%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI + + + + ++ + I Sbjct: 401 VSPDEEMTNMIRFQRGYQASARTMSTLDEMLDTLINRTG 439 >gi|329901228|ref|ZP_08272753.1| Flagellar basal-body rod protein FlgC [Oxalobacteraceae bacterium IMCC9480] gi|327549160|gb|EGF33752.1| Flagellar basal-body rod protein FlgC [Oxalobacteraceae bacterium IMCC9480] Length = 122 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM MI ++ + + ++ + +L+ + Sbjct: 77 GYVSMPNVNVVEEMVNMISASRSYQTNVETMNAAKTLLLKTLT 119 Score = 39.6 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Query: 12 QLALEQRLSTVADNMSNT----DTVG--FRTIKVKFSEV 44 A QRL+ VA N++N T G ++ +V FS V Sbjct: 1 MSAQAQRLNVVASNIANADSTTSTNGQVYKAKQVVFSAV 39 >gi|323490140|ref|ZP_08095360.1| flagellar basal body rod protein FlgC [Planococcus donghaensis MPA1U2] gi|323396188|gb|EGA89014.1| flagellar basal body rod protein FlgC [Planococcus donghaensis MPA1U2] Length = 151 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ SN + + EM ++ T+ + + T ++ ++ ++A+ Sbjct: 106 GYVRMSNVDPLQEMVDLMSATRSYEANVTALNASKSMFMKAL 147 Score = 42.7 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-DIDQKISFVAS 61 T FNI + A R+ V+ N++N +T R V + K ++ Q + S Sbjct: 5 TGFNISSSGLTANRLRMDVVSANIANANTN--RAELVDGEWMPYRRKTVELSQSGTSPFS 62 Query: 62 GKEYLSKEVGSFISTG 77 + + G+ TG Sbjct: 63 NQLQSAINRGNTAVTG 78 >gi|304316911|ref|YP_003852056.1| flagellar basal-body rod protein FlgB [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778413|gb|ADL68972.1| flagellar basal-body rod protein FlgB [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 136 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 A A E R +++N++N DT GF+ V F ++ N Sbjct: 15 ALDASELRDEVISNNIANVDTPGFKRSDVNFESILNDAINS 55 >gi|254524155|ref|ZP_05136210.1| flagellar hook-associated protein FlgK [Stenotrophomonas sp. SKA14] gi|219721746|gb|EED40271.1| flagellar hook-associated protein FlgK [Stenotrophomonas sp. SKA14] Length = 626 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + G A LA ++ L+T + N++N +T G+ KV F A + + + Sbjct: 1 MSSVLSTGTGALLAFQRALATTSHNVANLNTPGYSRQKVNF-----ATADPQNYGYGTIG 55 Query: 61 SGKEYLS 67 +G Sbjct: 56 NGTRITD 62 >gi|90579907|ref|ZP_01235715.1| flagellar basal body rod protein [Vibrio angustum S14] gi|90438792|gb|EAS63975.1| flagellar basal body rod protein [Vibrio angustum S14] Length = 138 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + + D +++ +++ ++ Sbjct: 93 GFIYKPNVNVMEEMANMISASRSYQNNVQVADASKQMLMKTLQ 135 Score = 37.7 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N ++V ++ F+ + + + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYKARHPIFAAALNSASYHQSSSV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVQVKG 70 >gi|89075493|ref|ZP_01161904.1| Putative flagellar basal body rod protein FlgC [Photobacterium sp. SKA34] gi|89048765|gb|EAR54336.1| Putative flagellar basal body rod protein FlgC [Photobacterium sp. SKA34] Length = 138 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + + D +++ +++ ++ Sbjct: 93 GFIYKPNVNVMEEMANMISASRSYQNNVQVADASKQMLMKTLQ 135 Score = 37.7 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N ++V ++ F+ + + + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYKARHPIFAAALNSASYHQSSSV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVQVKG 70 >gi|294500941|ref|YP_003564641.1| flagellar basal-body rod protein FlgC [Bacillus megaterium QM B1551] gi|294350878|gb|ADE71207.1| flagellar basal-body rod protein FlgC [Bacillus megaterium QM B1551] Length = 149 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 25/43 (58%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G+++ N + + EM +I T+ + + T+ + N+ + +A+ Sbjct: 103 QGYVKMPNVDPLKEMTDLISATRSYEANVTVFNTNKSILTKAL 145 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 + NI +A A R+ V+ NM+N +T Sbjct: 5 RNMNITSSALTANRLRMDVVSSNMANAETT 34 >gi|207728344|ref|YP_002256738.1| flagellar basal-body rod protein flgc [Ralstonia solanacearum MolK2] gi|207739739|ref|YP_002258132.1| flagellar basal-body rod protein flgc [Ralstonia solanacearum IPO1609] gi|206591590|emb|CAQ57202.1| flagellar basal-body rod protein flgc [Ralstonia solanacearum MolK2] gi|206593121|emb|CAQ60027.1| flagellar basal-body rod protein flgc [Ralstonia solanacearum IPO1609] Length = 168 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM MI ++ + + + + + +A+ Sbjct: 114 PGNPLADAD------GYVTMPNVDVVDEMVNMISASRSYQANVEVANTTKTMAAKALT 165 Score = 38.5 bits (89), Expect = 0.89, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQKISF 58 ++ +A A +R++ VA N++N G +R +V FS G + Sbjct: 40 MDVAGSALTAQSKRMNVVASNLANAESVTGPDGTAYRAKQVVFSPEQGTDGYATGVSVDG 99 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 V K G L Sbjct: 100 VVEDTVTPMKR---MHQPGNPL 118 >gi|217972596|ref|YP_002357347.1| flagellar basal body rod protein FlgC [Shewanella baltica OS223] gi|304409980|ref|ZP_07391599.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS183] gi|307302307|ref|ZP_07582065.1| flagellar basal-body rod protein FlgC [Shewanella baltica BA175] gi|217497731|gb|ACK45924.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS223] gi|304351389|gb|EFM15788.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS183] gi|306914345|gb|EFN44766.1| flagellar basal-body rod protein FlgC [Shewanella baltica BA175] Length = 138 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 GF+ N N M EM MI ++ + + + + + + + Sbjct: 93 GFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTL 134 Score = 35.8 bits (82), Expect = 5.8, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F++ + A RL+T A N++N D+V +R+ F + ++ Sbjct: 7 FDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRSRHPIFEAEMAKAQSQQQASQGV 66 Query: 59 VASGKEYLSK 68 G + Sbjct: 67 AVKGIVESDR 76 >gi|269103183|ref|ZP_06155880.1| flagellar hook-associated protein FlgK [Photobacterium damselae subsp. damselae CIP 102761] gi|268163081|gb|EEZ41577.1| flagellar hook-associated protein FlgK [Photobacterium damselae subsp. damselae CIP 102761] Length = 661 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 2/68 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASG 62 IG++ +++L + N+SN +T G+ V+ + N Sbjct: 6 MQIGMSGLRTSQKQLDVASHNISNVNTPGYSRQVVEQKADDAFYNGSNYYGTGAYIDNVS 65 Query: 63 KEYLSKEV 70 + Y Sbjct: 66 RAYDQFAA 73 >gi|117923583|ref|YP_864200.1| flagellar basal-body rod protein FlgC [Magnetococcus sp. MC-1] gi|117607339|gb|ABK42794.1| flagellar basal-body rod protein FlgC [Magnetococcus sp. MC-1] Length = 141 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + M EM M+ ++ + + ++++ +++ L+A+ Sbjct: 96 GYVAMPNIDVMTEMVNMMSASRSYEANVSVLNASKQMALKAL 137 Score = 40.0 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 11/68 (16%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVK-----FSEVVGAIKN 50 TSF + + A R++ +++N++N T G ++ F + + ++ Sbjct: 4 LTSFKVTASGLAAQRLRMNIISENVANAQTTRTPEGGPYKRRDPVFMSRPFQDYLTREES 63 Query: 51 DIDQKISF 58 ++ Sbjct: 64 AGATGVAV 71 >gi|296274007|ref|YP_003656638.1| flagellar basal-body rod protein FlgC [Arcobacter nitrofigilis DSM 7299] gi|296098181|gb|ADG94131.1| flagellar basal-body rod protein FlgC [Arcobacter nitrofigilis DSM 7299] Length = 153 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVV 45 +NI + A R++ V+ N++N T G ++ V F E++ Sbjct: 5 DGYNIASSGMSAQRTRINVVSANIANAKTTHSTDGGPYKKQNVVFQEML 53 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 5/24 (20%), Positives = 11/24 (45%) Query: 203 NANSMYEMGQMIHLTQKFNSITTL 226 N N + EM +I + + + + Sbjct: 113 NINPVIEMVDLIEAMRSYEANVSA 136 >gi|189426355|ref|YP_001953532.1| flagellar basal-body rod protein FlgC [Geobacter lovleyi SZ] gi|189422614|gb|ACD97012.1| flagellar basal-body rod protein FlgC [Geobacter lovleyi SZ] Length = 145 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 19/43 (44%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N + EM MI T+ + + + L+ + Sbjct: 99 QGYVALPNVNVVEEMADMITATRVYEANVMSAQAAKNMALKTL 141 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 T+ N +A A R++ ++ N++N +T G ++ F+ Sbjct: 5 TAMNTSSSALTAERTRMNLISSNLANVNTTRTPEGGPYKRKDAVFA 50 >gi|20807891|ref|NP_623062.1| flagellar basal body rod protein [Thermoanaerobacter tengcongensis MB4] gi|20516456|gb|AAM24666.1| Flagellar basal body rod protein [Thermoanaerobacter tengcongensis MB4] Length = 146 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 22/44 (50%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 ++G++ N N + EM MI T+ + + T + + +++ Sbjct: 99 QQGYVSYPNVNIVAEMVDMISATRAYEANVTAFNAAKSMFQKSL 142 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 +S +I A R+ V+ N++N +T G +R V F E+ I +K+ Sbjct: 5 SSMDISATGLTAERVRMDVVSQNIANANTTRTVQGGPYRRKLVVFKEIQPDSFQSILEKV 64 Query: 57 SFVASGKEY 65 +GK Sbjct: 65 KGKYTGKGV 73 >gi|258512522|ref|YP_003185956.1| flagellar hook-associated protein FlgK [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479248|gb|ACV59567.1| flagellar hook-associated protein FlgK [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 481 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + IGL+ A+++ S V +N+ N +T G+ V F+E V + G Sbjct: 7 SPLYIGLSGLQAMQEAESVVGNNIDNANTPGYAQETVNFAENVPYPPEPGYGPLVAGQLG 66 Query: 63 KEYLSKEV 70 + + V Sbjct: 67 QGVSVQSV 74 >gi|167034937|ref|YP_001670168.1| flagellar hook-associated protein FlgK [Pseudomonas putida GB-1] gi|166861425|gb|ABY99832.1| flagellar hook-associated protein FlgK [Pseudomonas putida GB-1] Length = 680 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + +IGL+ A + LS ++N++N T G+ + + A + F+ Sbjct: 1 MSSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQT-----IQAAGASHNIGAGFLG 55 Query: 61 SGKEYLS 67 +G Sbjct: 56 TGTTLAD 62 >gi|90411003|ref|ZP_01219017.1| flagellar basal body rod protein [Photobacterium profundum 3TCK] gi|90328216|gb|EAS44527.1| flagellar basal body rod protein [Photobacterium profundum 3TCK] Length = 138 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + S + D +++ ++ ++ Sbjct: 93 GYIYKPNVNVMEEMANMISASRSYQSNVQVADASKQMLMSTLQ 135 Score = 37.7 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N ++V ++ F+ + + + + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYKARHPIFAAALNSASYQRAESV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVQVKG 70 >gi|160939632|ref|ZP_02086980.1| hypothetical protein CLOBOL_04524 [Clostridium bolteae ATCC BAA-613] gi|158437423|gb|EDP15187.1| hypothetical protein CLOBOL_04524 [Clostridium bolteae ATCC BAA-613] Length = 118 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 8 GLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 G+ +Q + N++N +T G++ KV+F +V+ ++ V Sbjct: 15 GMDGMWLKQQ---IASHNIANVETPGYKAKKVEFRDVLYETAQGTERISKPVVEEDGNTQ 71 Query: 68 KEV 70 Sbjct: 72 ARP 74 >gi|254485520|ref|ZP_05098725.1| flagellar basal-body rod protein FlgC [Roseobacter sp. GAI101] gi|214042389|gb|EEB83027.1| flagellar basal-body rod protein FlgC [Roseobacter sp. GAI101] Length = 130 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + ++ + A RL +++N+SN DT G+R V F + + V +G Sbjct: 6 NALDVSSSGLRAQANRLRHLSENISNADTPGYRRKLVSFQTAFS-----LGDAPAKVQTG 60 Query: 63 KEYLSKEV 70 K +L + Sbjct: 61 KVHLDQTA 68 Score = 35.8 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 5/33 (15%), Positives = 13/33 (39%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 SN N + E+ + + + + ++ K Sbjct: 88 GSNVNLLIELADAKEAQRSYEANLKMFEQTRKM 120 >gi|166009026|ref|ZP_02229924.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. E1979001] gi|167419248|ref|ZP_02311001.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466339|ref|ZP_02331043.1| flagellar basal body rod protein FlgF [Yersinia pestis FV-1] gi|229840622|ref|ZP_04460781.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842827|ref|ZP_04462979.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. India 195] gi|165992365|gb|EDR44666.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Antiqua str. E1979001] gi|166963242|gb|EDR59263.1| flagellar basal-body rod protein FlgF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229690094|gb|EEO82151.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. India 195] gi|229696988|gb|EEO87035.1| Flagellar basal-body rod protein flgF [Yersinia pestis biovar Orientalis str. PEXU2] Length = 62 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 16/37 (43%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTI 37 M ++ + A+N++N++T GFR Sbjct: 1 MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRAD 37 >gi|171059414|ref|YP_001791763.1| flagellar basal-body rod protein FlgC [Leptothrix cholodnii SP-6] gi|170776859|gb|ACB34998.1| flagellar basal-body rod protein FlgC [Leptothrix cholodnii SP-6] Length = 136 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 25/43 (58%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N++ EM MI ++ + + +++ + +L+ ++ Sbjct: 89 GYVTYSNVNAVEEMVNMISASRSYQNNVEVMNTAKTLLLKTLQ 131 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 M FN+ +A A QRL+ VA N++N DTV F+ +V F V Sbjct: 3 MLNIFNVAGSAVSAQSQRLNAVATNLANADTVAGPDGQSFKARQVMFQSVQMGEMGAAGV 62 Query: 55 KISFVASGKE 64 K+S + + Sbjct: 63 KVSQITEDQS 72 >gi|221069324|ref|ZP_03545429.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni KF-1] gi|264676568|ref|YP_003276474.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni CNB-2] gi|299531288|ref|ZP_07044698.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni S44] gi|220714347|gb|EED69715.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni KF-1] gi|262207080|gb|ACY31178.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni CNB-2] gi|298720695|gb|EFI61642.1| flagellar basal-body rod protein FlgC [Comamonas testosteroni S44] Length = 134 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFV-----RRENSGISPNIPPTPLEDLSGVTVKRG 197 G G + + +V+ D S G G + P PL D G Sbjct: 36 GPDGSVYKARQVVFQTVPMGNDGSAGVKVNAISEDNTPGRRIHDPSNPLADGE------G 89 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++ SN +++ EM MI ++ + + +++ + +L+ ++ Sbjct: 90 YVTHSNVSAVDEMVNMISASRSYQNNVEVMNTAKTLLLKTLQ 131 Score = 44.3 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 M + FNI +A A QRL+ VA N++N D V ++ +V F V Sbjct: 3 MFSIFNISGSAVSAQSQRLNVVASNLANVDAVAGPDGSVYKARQVVFQTVPMGNDGSAGV 62 Query: 55 KISFVA 60 K++ ++ Sbjct: 63 KVNAIS 68 >gi|330502740|ref|YP_004379609.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina NK-01] gi|328917026|gb|AEB57857.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina NK-01] Length = 681 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M NIGL+ A + L+ N+ N +T GF E + A + ++ Sbjct: 1 MADLLNIGLSGLAANKTSLAVTGHNIVNVNTPGFSR-----QETIQATRTPQFSGAGYIG 55 Query: 61 SGKEYLS 67 SG Sbjct: 56 SGTTLTD 62 >gi|237653577|ref|YP_002889891.1| flagellar hook-associated protein FlgK [Thauera sp. MZ1T] gi|237624824|gb|ACR01514.1| flagellar hook-associated protein FlgK [Thauera sp. MZ1T] Length = 660 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV--KFSEVVGAIKNDIDQKISF 58 M + NIGL A + L+T + N++N T GF V + + + Sbjct: 1 MASLLNIGLTGLSASQAYLNTTSHNIANAATPGFHRQTVTQEARDPQYSGGAFFGTGTGV 60 Query: 59 VASGKEYLSKEVGSFIS 75 + Y G +S Sbjct: 61 TGVARSYSQLLEGQVLS 77 >gi|158321541|ref|YP_001514048.1| flagellar hook-associated protein FlgK [Alkaliphilus oremlandii OhILAs] gi|158141740|gb|ABW20052.1| flagellar hook-associated protein FlgK [Alkaliphilus oremlandii OhILAs] Length = 522 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 T F + A ++ L N++N +T G+ +++ V + + + +G Sbjct: 6 TGFTTAKSGLFASQRALDITGHNLANVNTKGYSRQRLEQ---VQSTPLKLAGGQGMLGTG 62 Query: 63 KEYLSKEV 70 + + Sbjct: 63 VDTTAIHQ 70 >gi|309779445|ref|ZP_07674206.1| flagellar basal-body rod protein FlgC [Ralstonia sp. 5_7_47FAA] gi|308921686|gb|EFP67322.1| flagellar basal-body rod protein FlgC [Ralstonia sp. 5_7_47FAA] Length = 135 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM MI ++ + + + + + +A+ Sbjct: 81 PGNPLADAD------GYVTMPNVDVVDEMVNMISASRSYQANVEVANTTKTMASKALT 132 Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQKISF 58 ++ +A A +R++ VA N++N G +R +V FS A ++D Sbjct: 7 MDVAGSALTAQSKRMNVVASNLANAESVTGPDGKAYRAKQVVFS---PAQESDDYATGVS 63 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 V E + G L Sbjct: 64 VDRVVEDTVTPMKRMHQPGNPL 85 >gi|172057891|ref|YP_001814351.1| flagellar basal-body rod protein FlgB [Exiguobacterium sibiricum 255-15] gi|171990412|gb|ACB61334.1| flagellar basal-body rod protein FlgB [Exiguobacterium sibiricum 255-15] Length = 120 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 + +A ++ ++ N++N DT G++ +V FS+V+ + ++ + + + Sbjct: 11 MTQAVDRTVAAQK---VISTNIANVDTPGYKAKRVVFSDVLDSEMKMSLKRHATIGTSGS 67 Query: 65 YLSKEVGSFISTGTELDF 82 + + + + G +D Sbjct: 68 IVEQSS-AMRNDGNGVDI 84 >gi|302878274|ref|YP_003846838.1| flagellar basal-body rod protein FlgC [Gallionella capsiferriformans ES-2] gi|302581063|gb|ADL55074.1| flagellar basal-body rod protein FlgC [Gallionella capsiferriformans ES-2] Length = 134 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM MI ++ + + +++ ++ +L+ + Sbjct: 89 GYVSMPNVNVVDEMVNMISASRAYQNNVDVLNTSKTLLLKTLT 131 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A QRL+ VA N++N T G +R +V FS + K+ Sbjct: 5 NIFNVAGSGMAAQSQRLNVVASNLANADSTTGADGKPYRAKQVVFSATPMGSTDVQGVKV 64 Query: 57 SFVASGKE 64 VA Sbjct: 65 VRVAEDTS 72 >gi|54308095|ref|YP_129115.1| flagellar basal body rod protein FlgC [Photobacterium profundum SS9] gi|46912521|emb|CAG19313.1| Putative flagellar basal body rod protein FlgC [Photobacterium profundum SS9] Length = 138 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + S + D +++ ++ ++ Sbjct: 93 GYIYKPNVNVMEEMANMISASRSYQSNVQVADASKQMLMSTLQ 135 Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N ++V +R F+ + + + + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAEETYRARHPIFAAALNSASYQRAESV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVQVKG 70 >gi|85712252|ref|ZP_01043303.1| Flagellar basal body rod protein [Idiomarina baltica OS145] gi|85693879|gb|EAQ31826.1| Flagellar basal body rod protein [Idiomarina baltica OS145] Length = 150 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G++ SN N+M EM MI ++ + + + D K+M + + + Sbjct: 104 GYIYRSNVNTMEEMANMISASRSYQTNVQVADTA-KTMTQRLLRLG 148 Score = 37.3 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKN 50 FNI +A A RL+T A N++N ++V +R F+ + Sbjct: 5 NIFNISGSAMSAQSVRLNTTASNLANANSVSSSIDETYRARSPIFAAALSDASG 58 >gi|163856433|ref|YP_001630731.1| flagellar basal body rod protein FlgC [Bordetella petrii DSM 12804] gi|163260161|emb|CAP42463.1| flagellar basal-body rod protein FlgC [Bordetella petrii] Length = 139 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 9/104 (8%) Query: 142 VGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED----LSGVTVK-- 195 VG G+ + +V+ + Q + R + P + Sbjct: 35 VGPDGQPYRARQVVFQ---VNPPAGQAYGREIGGVRVAGVVQDPSPPKLIYDPSHPLANP 91 Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ N + + E MI ++ + + +++ ++ M++ + Sbjct: 92 QGYVTMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMMKTLT 135 Score = 36.6 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I +A A QR++ A N++N D+ VG +R +V F V ++I Sbjct: 7 FDIAGSALQAQSQRMNVSASNLANADSAVGPDGQPYRARQVVFQ-VNPPAGQAYGREIGG 65 Query: 59 VASGKEYLSKEV 70 V Sbjct: 66 VRVAGVVQDPSP 77 >gi|160878463|ref|YP_001557431.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans ISDg] gi|160427129|gb|ABX40692.1| flagellar hook-associated protein FlgK [Clostridium phytofermentans ISDg] Length = 620 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 23/69 (33%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 +S +G++ + L+T N++N +T G+ + + Sbjct: 4 MSSLYVGVSGLQVSQNGLNTTGHNLANVETEGYVRQQTVLQTSQYRTIGQSYISPMQLGL 63 Query: 62 GKEYLSKEV 70 G E + Sbjct: 64 GAETAAVRQ 72 >gi|59712483|ref|YP_205259.1| flagellar basal body rod protein FlgC [Vibrio fischeri ES114] gi|197336337|ref|YP_002156702.1| flagellar basal-body rod protein FlgC [Vibrio fischeri MJ11] gi|24459275|gb|AAL86628.1| FlgC [Vibrio fischeri ES114] gi|59480584|gb|AAW86371.1| flagellar proximal rod protein FlgC [Vibrio fischeri ES114] gi|197317827|gb|ACH67274.1| flagellar basal-body rod protein FlgC [Vibrio fischeri MJ11] Length = 138 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D +++ + +R Sbjct: 93 GYIFKPNVNVMEEMANMISASRSYQTNVQVADASKQMLQSTLR 135 Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + NM+N D+V ++ + F + K D + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNMANADSVSSSAAETYKARQAVFGAELSKAKYKQDHTV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVLG 70 >gi|52080221|ref|YP_079012.1| flagellar basal body rod protein FlgC [Bacillus licheniformis ATCC 14580] gi|52785598|ref|YP_091427.1| flagellar basal body rod protein FlgC [Bacillus licheniformis ATCC 14580] gi|319646000|ref|ZP_08000230.1| flagellar basal-body rod protein [Bacillus sp. BT1B_CT2] gi|52003432|gb|AAU23374.1| flagellar basal-body rod protein [Bacillus licheniformis ATCC 14580] gi|52348100|gb|AAU40734.1| FlgC [Bacillus licheniformis ATCC 14580] gi|317391750|gb|EFV72547.1| flagellar basal-body rod protein [Bacillus sp. BT1B_CT2] Length = 150 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM ++ T+ + + T ++ + +++A+ Sbjct: 105 GYVQMPNVDPLKEMVDLMSSTRSYEANVTAMNATKGMLMKAL 146 Score = 43.9 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S NI +A A R+ TV+ N++N DT Sbjct: 5 NSINISASALTAQRVRMDTVSSNLANMDTT 34 >gi|290474970|ref|YP_003467854.1| flagellar basal body rod cell-proximal protein [Xenorhabdus bovienii SS-2004] gi|289174287|emb|CBJ81077.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Xenorhabdus bovienii SS-2004] Length = 134 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 23/109 (21%) Query: 142 VGEKGEIS-----------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 VG GE G+ I + + V R E P PL D Sbjct: 35 VGPDGEPYRAKQVVFRVAAPAGQEIGGVRVSEVVDDPTPFRLE------YRPGNPLADEK 88 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N + + EM I ++ + + +++ + ML+ + Sbjct: 89 ------GYVRMPNVDVVGEMVNTISASRSYQANIEVLNTTKSIMLKTLT 131 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 + F+I +A A QRL+ A NM+N VG +R +V F A + + Sbjct: 4 LSIFDIASSALSAQSQRLNVSASNMANADSVVGPDGEPYRAKQVVFRVAAPAGQEIGGVR 63 Query: 56 ISFV 59 +S V Sbjct: 64 VSEV 67 >gi|327399355|ref|YP_004340224.1| flagellar basal-body rod protein FlgC [Hippea maritima DSM 10411] gi|327181984|gb|AEA34165.1| flagellar basal-body rod protein FlgC [Hippea maritima DSM 10411] Length = 137 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 S NI + A R++ ++ N++N DTV G ++ V F + + +D+ +K+ Sbjct: 5 DSMNIASSGMSAQRLRMNIISSNIANADTVRTPEGGPYKRRDVVFEAIGYSKFSDVLKKV 64 Query: 57 SFV 59 Sbjct: 65 QVA 67 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 20/36 (55%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM +I + + + ++ID ++++ A+ Sbjct: 97 NINPVIEMTNLIDAMRTYQANASVIDSAKQTIQAAL 132 >gi|212634346|ref|YP_002310871.1| flagellar basal body rod protein FlgC [Shewanella piezotolerans WP3] gi|212555830|gb|ACJ28284.1| Flagellar basal-body rod protein FlgC [Shewanella piezotolerans WP3] Length = 138 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + D + + + +R Sbjct: 93 GFIYKPNVNVMEEMANMISASRSYQMNVQVTDAAKSMLQQTLR 135 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG--FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N + G +R F + + Sbjct: 5 NIFNVAGSGMSAQSVRLNTTASNIANADAVSSSAGETYRARHPIFEAEMSKAQQHQSASQ 64 Query: 57 SFVASG 62 S G Sbjct: 65 SVAVKG 70 >gi|329890330|ref|ZP_08268673.1| flagellar hook-associated protein FlgK [Brevundimonas diminuta ATCC 11568] gi|328845631|gb|EGF95195.1| flagellar hook-associated protein FlgK [Brevundimonas diminuta ATCC 11568] Length = 735 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGF 34 + NI + A + +L V+DN+SN +T G+ Sbjct: 4 NSIMNIATSGMNAAQTQLRVVSDNVSNVNTPGY 36 >gi|284041507|ref|YP_003391847.1| flagellar basal-body rod protein FlgC [Conexibacter woesei DSM 14684] gi|283945728|gb|ADB48472.1| flagellar basal-body rod protein FlgC [Conexibacter woesei DSM 14684] Length = 149 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 20/42 (47%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM +I ++ + + T + ++ + + Sbjct: 104 GYVAMPNVNPVTEMVDLISSSRSYEANVTAMQSAKQMFTKTL 145 Score = 35.8 bits (82), Expect = 5.7, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 14/30 (46%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 + +I + A R+ A+N++N T Sbjct: 5 DAIDIAGSGLTAERLRMDVTAENLANAQTT 34 >gi|285018203|ref|YP_003375914.1| flagellar hook-associated protein 1 (hap1) [Xanthomonas albilineans GPE PC73] gi|283473421|emb|CBA15926.1| probable flagellar hook-associated protein 1 (hap1) [Xanthomonas albilineans] Length = 624 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 23/41 (56%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS 42 + + G A LA ++ L TV+ N++N +T G+ + F+ Sbjct: 1 MSVMSTGTGALLAFQRALQTVSHNVANANTNGYSRQRASFA 41 >gi|160896081|ref|YP_001561663.1| flagellar basal-body rod protein FlgC [Delftia acidovorans SPH-1] gi|160361665|gb|ABX33278.1| flagellar basal-body rod protein FlgC [Delftia acidovorans SPH-1] Length = 134 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 25/43 (58%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN +++ EM MI ++ + + +++ + +L+ ++ Sbjct: 89 GYVTHSNVSAVDEMVNMISASRSYQNNVEVMNTTKSLLLKTLQ 131 Score = 41.2 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 M + F+I +A A QRL+ VA N++N D V ++ +V F V + Sbjct: 3 MFSIFSISGSAVSAQSQRLNVVASNLANVDAVAGPDGKAYQARQVVFQTVAMGEEGSSGV 62 Query: 55 KISFVA 60 ++S ++ Sbjct: 63 RVSAIS 68 >gi|301168512|emb|CBW28102.1| putative flagellar hook-associated protein 1 [Bacteriovorax marinus SJ] Length = 487 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M NIG A ++ L T N+SN +T G+ +V I + + Sbjct: 1 MSDLLNIGRTGLNASKKSLETTGHNISNVNTEGYSRQRVN-----QTTNTPITKGGTVHG 55 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFA 91 +G S + L+ A+ D +F Sbjct: 56 TGVRVKSVTRINDDFINKRLEKAISNDRFFE 86 >gi|33596138|ref|NP_883781.1| flagellar basal body rod protein FlgC [Bordetella parapertussis 12822] gi|33601539|ref|NP_889099.1| flagellar basal body rod protein FlgC [Bordetella bronchiseptica RB50] gi|33573141|emb|CAE36788.1| flagellar basal-body rod protein FlgC [Bordetella parapertussis] gi|33575975|emb|CAE33054.1| flagellar basal-body rod protein FlgC [Bordetella bronchiseptica RB50] Length = 139 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 23/45 (51%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ N + + E MI ++ + + +++ ++ ML+ + Sbjct: 91 AQGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTLT 135 Score = 38.9 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 + F I +A A QR++ A NM+N D+V +R +V F V Q+ Sbjct: 4 LSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQ-VNPPPGQAFGQE 62 Query: 56 ISFVASGKEYLSKEV 70 I V + Sbjct: 63 IGGVRVAGVVEDQSP 77 >gi|284989567|ref|YP_003408121.1| flagellar hook-associated protein FlgK [Geodermatophilus obscurus DSM 43160] gi|284062812|gb|ADB73750.1| flagellar hook-associated protein FlgK [Geodermatophilus obscurus DSM 43160] Length = 482 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 N A A ++ L N++N +T G+ +V+ + G I S V +G Sbjct: 7 GLNTARTALWASQRGLDVTGQNIANVNTDGYSRQRVELRAMGGTAVPAIHSVSSPVGNGV 66 Query: 64 E 64 + Sbjct: 67 D 67 Score = 37.3 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S N EM M+ +++ ++ ++++ I Sbjct: 438 SGVNLDEEMTNMLSFQHAYSAAARMVTAIDEALDTLINRTG 478 >gi|91202526|emb|CAJ72165.1| similar to flagellar basal-body rod protein FlgB [Candidatus Kuenenia stuttgartiensis] Length = 125 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 21 TVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV--GSFISTGT 78 VA+N++N +T G++ + V F + QK K +S++V G+ + G Sbjct: 25 VVANNIANVNTPGYKKMVVNFEGELEKAIQSSSQKNFNKFEPKVVISEDVVDGTLRNDGN 84 Query: 79 ELDF 82 +D Sbjct: 85 TVDM 88 >gi|3493240|gb|AAC33326.1| hook associated protein I homolog [Caulobacter crescentus CB15] Length = 397 Score = 50.0 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG 46 + + +A + L +DN++N +T G+ V S ++ Sbjct: 7 MSTATSGMMAAQTGLRVTSDNIANVNTTGYVRKTVSQSNLLS 48 >gi|218887610|ref|YP_002436931.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758564|gb|ACL09463.1| flagellar hook-associated protein FlgK [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 702 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQK 55 N+G + LA + + T +N++N +TVG+ V+F E + I Sbjct: 8 LNMGQLSLLANQTAIQTTGNNIANVNTVGYSRQAVRFEEYPALDGFPGQIGTG 60 >gi|121533765|ref|ZP_01665592.1| flagellar basal-body rod protein FlgC [Thermosinus carboxydivorans Nor1] gi|121307756|gb|EAX48671.1| flagellar basal-body rod protein FlgC [Thermosinus carboxydivorans Nor1] Length = 143 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM M+ + + + T I+ + L+A+ Sbjct: 98 GYVAMPNVNIIAEMVDMMTAARAYEANVTAINAAKSMALKAL 139 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 30/72 (41%), Gaps = 15/72 (20%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKV---------KFSEVVGA 47 T+ + + A R+ +++N++N +T G +R V F++++ Sbjct: 5 TAIDAAASGMTAERLRMDVISNNIANANTTRTPEGGPYRRQMVIFQPRAGQNSFADLLSG 64 Query: 48 IKNDIDQKISFV 59 ++ ++ + Sbjct: 65 KVENVGVRVVGI 76 >gi|94312666|ref|YP_585875.1| flagellar basal body rod protein FlgB [Cupriavidus metallidurans CH34] gi|93356518|gb|ABF10606.1| flagellar basal body rod protein FlgB [Cupriavidus metallidurans CH34] gi|222834412|gb|EEE72889.1| predicted protein [Populus trichocarpa] Length = 134 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A QR S +A N+++ DT G++ F+ + + S Sbjct: 14 ALSLRTQRQSVIASNIAHADTPGYKARDFDFASTLAQSVERGQRSEGTSLSTTSVRHLPG 73 Query: 71 GSFISTGTELDFAL 84 + STG ELD+ + Sbjct: 74 QAPTSTGHELDYRI 87 >gi|302392398|ref|YP_003828218.1| flagellar basal-body rod protein FlgC [Acetohalobium arabaticum DSM 5501] gi|302204475|gb|ADL13153.1| flagellar basal-body rod protein FlgC [Acetohalobium arabaticum DSM 5501] Length = 145 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++E N + EM M+ ++ + + T ++ +++ A++ Sbjct: 100 GYVEMPNIDIASEMVDMVSASRAYEANVTALNTSKQMAKSALK 142 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 + N+ + A R+ +++N++N +T G ++ F Sbjct: 5 SGMNVSSSGMTAQRLRMDLISNNIANINTTRTDDGGPYKKKSPVFK 50 >gi|260574405|ref|ZP_05842409.1| flagellar basal-body rod protein FlgC [Rhodobacter sp. SW2] gi|259023301|gb|EEW26593.1| flagellar basal-body rod protein FlgC [Rhodobacter sp. SW2] Length = 126 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ 54 S + + A RL V++N++N DT G+ + F E + + Sbjct: 5 LQSLTMAASGMEAQAMRLRHVSENIANADTPGYHRKTMSFQEAMDGGTVEAGP 57 Score = 39.3 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 5/41 (12%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 SN + + E+ + + + + D+ + M +++ + Sbjct: 84 GSNVDLVIEIADAREAQRSYEANLKMFDQA-RQMTQSLFEL 123 >gi|120554039|ref|YP_958390.1| flagellar hook-associated protein FlgK [Marinobacter aquaeolei VT8] gi|120323888|gb|ABM18203.1| flagellar hook-associated protein FlgK [Marinobacter aquaeolei VT8] Length = 688 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M IGL+ L + L+T A+N++N +T G+ +V+F + + Sbjct: 1 MAGLIGIGLSGVLGYQAALNTTANNITNANTPGYSRQEVQFE-----TQEGRRTGAGTIG 55 Query: 61 SGKEYLS 67 SG Sbjct: 56 SGVSVAD 62 >gi|253996321|ref|YP_003048385.1| flagellar basal-body rod protein FlgC [Methylotenera mobilis JLW8] gi|253983000|gb|ACT47858.1| flagellar basal-body rod protein FlgC [Methylotenera mobilis JLW8] Length = 135 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N EM MI ++ + + ++ + +++ + Sbjct: 89 GYVSMPNVNVTEEMVNMISASRAYQNNVETMNATKTMLMKTLT 131 Score = 43.5 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTD-------TVGFRTIKVKFSEVVGAIKNDIDQK 55 FNI +A A QRL+TVA N++N D T +++ +V FS + + K Sbjct: 5 NVFNISGSAMSAQAQRLNTVASNLANADSATSANGTP-YKSKQVVFSAMPSKSPDVSGVK 63 Query: 56 ISFV 59 ++ V Sbjct: 64 VTKV 67 >gi|253682065|ref|ZP_04862862.1| flagellar basal-body rod protein FlgC [Clostridium botulinum D str. 1873] gi|253561777|gb|EES91229.1| flagellar basal-body rod protein FlgC [Clostridium botulinum D str. 1873] Length = 145 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI T+ + + T I+ ++ ++A+ Sbjct: 100 GYVLMPNVNILNEMADMIAATRAYEANVTAINSSKSMFMKAL 141 Score = 36.2 bits (83), Expect = 4.0, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV-G-------FRTIKVKFSE 43 +S I + A R+ T++ N++N T G +R F E Sbjct: 5 SSLRISASGLSAERLRMDTISSNITNFKTTRGKDGNKEPYRRKIAVFQE 53 >gi|254466614|ref|ZP_05080025.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium Y4I] gi|206687522|gb|EDZ48004.1| flagellar basal-body rod protein FlgC [Rhodobacterales bacterium Y4I] Length = 130 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + ++ + A RL V++N+SN DT G+R V F V ++ + V +G Sbjct: 6 KALSVTASGLKAQAARLRHVSENISNADTPGYRRKAVPFESV-----RELRTDVEHVRTG 60 Query: 63 KEYLSKE 69 + L + Sbjct: 61 RVTLDRS 67 Score = 43.5 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G E SN + M E+ + + + + ++ +SM ++ + Sbjct: 83 SGHFEGSNVDLMIEIADAREAQRSYEANLKMFEQT-RSMSASLMEL 127 >gi|253681928|ref|ZP_04862725.1| flagellar hook-associated protein FlgK [Clostridium botulinum D str. 1873] gi|253561640|gb|EES91092.1| flagellar hook-associated protein FlgK [Clostridium botulinum D str. 1873] Length = 686 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVASG 62 N+G A + L + N++N++T G+ + G + + +G Sbjct: 8 LNVGKRGLYAQQGALDVTSHNIANSNTEGYTRQRAIMETTRPFGMPSMNCQIGPGQIGTG 67 Query: 63 KE 64 E Sbjct: 68 VE 69 Score = 38.5 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 12/96 (12%) Query: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL-SGVTVK-RGFL--------ED-SNAN 205 T+GL ++ ++ +S + +E+ + TVK +G L E S + Sbjct: 590 TLGLDTIKGDINGMKI-DSYFKDTVDKLGVEEQQAKRTVKNQGSLLKDFSQRRESTSGVS 648 Query: 206 SMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM ++ + + +I ++ + I + Sbjct: 649 LNEEMANIVQYQHAYQANAKIIATTDQLLDVVINGL 684 >gi|16125152|ref|NP_419716.1| flagellar hook-associated protein FlaN [Caulobacter crescentus CB15] gi|221233880|ref|YP_002516316.1| flagellar hook-associated protein FlaN [Caulobacter crescentus NA1000] gi|13422164|gb|AAK22884.1| flagellar hook-associated protein FlaN, putative [Caulobacter crescentus CB15] gi|220963052|gb|ACL94408.1| flagellar hook-associated protein FlaN [Caulobacter crescentus NA1000] Length = 703 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG 46 + + +A + L +DN++N +T G+ V S ++ Sbjct: 7 MSTATSGMMAAQTGLRVTSDNIANVNTTGYVRKTVSQSNLLS 48 >gi|260428875|ref|ZP_05782852.1| flagellar basal-body rod protein FlgC [Citreicella sp. SE45] gi|260419498|gb|EEX12751.1| flagellar basal-body rod protein FlgC [Citreicella sp. SE45] Length = 130 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + ++ + A RL V++N++N DT G+ + F + + V +G Sbjct: 6 NALSVSSSGLRAQASRLRIVSENIANVDTPGYHRKTIPFE-----TSGNARDGVQMVETG 60 Query: 63 KEYLSKE 69 + L + Sbjct: 61 RVDLDRS 67 >gi|222099583|ref|YP_002534151.1| Flagellar hook-associated protein 1 [Thermotoga neapolitana DSM 4359] gi|221571973|gb|ACM22785.1| Flagellar hook-associated protein 1 [Thermotoga neapolitana DSM 4359] Length = 860 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 22/70 (31%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N L + ++ V N++N +T G+ + + Q + Sbjct: 8 MFGILNTALTGIYTHKLAMNVVGHNIANANTPGYSRQRPVIEATPPIPLTTLTQPSIPLQ 67 Query: 61 SGKEYLSKEV 70 G + + Sbjct: 68 MGTGSRVRTI 77 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 14/36 (38%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + EM MI F++ +I ++ + I Sbjct: 822 VSLDEEMANMIEYQHAFSAAAKVISTVDEMIQTVIN 857 >gi|209963543|ref|YP_002296458.1| flagellar basal-body rod protein FlgC, putative [Rhodospirillum centenum SW] gi|209957009|gb|ACI97645.1| flagellar basal-body rod protein FlgC, putative [Rhodospirillum centenum SW] Length = 137 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKNDIDQK 55 +SF I + A RL VA+NM+N + G +R + F V+ + Sbjct: 6 SSFGIAASGMKAQATRLRVVAENMANASSTGETPGADPYRRKTIVFDSVLDRALRADTVR 65 Query: 56 ISFVA 60 + + Sbjct: 66 VKTIG 70 Score = 38.5 bits (89), Expect = 0.86, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 19/42 (45%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N N++ EM M + + + ++ + + I Sbjct: 91 GYVKLPNVNTLVEMMDMREAGRSYEANLNVLQQARGMLGRTI 132 >gi|295401181|ref|ZP_06811154.1| flagellar hook-associated protein FlgK [Geobacillus thermoglucosidasius C56-YS93] gi|294976774|gb|EFG52379.1| flagellar hook-associated protein FlgK [Geobacillus thermoglucosidasius C56-YS93] Length = 530 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 1 MQTSFN---IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 M ++F+ + + L A N++N +T G+ +V F E +++ Sbjct: 1 MLSTFHGLEVAKRGMFTQQAALYVTAHNIANANTPGYSRQRVNFVETEPFPPASMNRPQI 60 Query: 58 FVASGKEYLSKEVGSFIS 75 G E GS Sbjct: 61 PGQMGTGV---EAGSIQR 75 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 19/41 (46%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S+ + EM MI +N+ +I ++ + + I N+ Sbjct: 486 SSVSLDEEMTNMIKFQHAYNAAARMITAIDEMLDKIINNMG 526 >gi|239907806|ref|YP_002954547.1| putative flagellar basal-body rod protein [Desulfovibrio magneticus RS-1] gi|239797672|dbj|BAH76661.1| putative flagellar basal-body rod protein [Desulfovibrio magneticus RS-1] Length = 128 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 12/94 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS-----------EVVGAIK 49 M + + +A A ++ A+N++N +T G+++ + ++V Sbjct: 1 MTDAISAAQSALSAFSTSMAVTANNVANVNTDGYKSQDARLETGPDGQGVRVSDIVRDAS 60 Query: 50 NDIDQKISFVASGKEYLSKEVGSFISTGTELDFA 83 Q S A + + + + T +D A Sbjct: 61 PGGYQPESVSAYNQAGVYEPSAGLVETSN-VDLA 93 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 17/110 (15%) Query: 137 DEIFNVGEKGEISQK--------GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED 188 + + NV G SQ G+ + + G+ S + P Sbjct: 24 NNVANVNTDGYKSQDARLETGPDGQGVRVSDIVRDASPGGYQPESVSAYNQAGVYEPSA- 82 Query: 189 LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G +E SN + + MI ++ F + I ++ + + Sbjct: 83 --------GLVETSNVDLARQTVDMIQTSRAFEANVVTIRSQDQMLGTLL 124 >gi|163738064|ref|ZP_02145480.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis BS107] gi|163742540|ref|ZP_02149926.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis 2.10] gi|161384125|gb|EDQ08508.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis 2.10] gi|161388680|gb|EDQ13033.1| flagellar basal-body rod protein FlgC [Phaeobacter gallaeciensis BS107] Length = 130 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S ++ +A A RL V++N+SN DT G+R V F V D+ + V G Sbjct: 6 KSLSVSASALKAQASRLRHVSENISNADTPGYRRKTVPFEAV-----RDLRSDVEKVEVG 60 Query: 63 KEYLSKE 69 L + Sbjct: 61 PVRLDRS 67 Score = 41.6 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLID---ENEKSMLEAIRN 240 G E SN + M E+ + + + + + + S+++ +R Sbjct: 83 SGHYEGSNVDLMIEIADAREAQRSYEANLKMFEQGRQMSSSLMDLLRR 130 >gi|77359720|ref|YP_339295.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] gi|76874631|emb|CAI85852.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas haloplanktis TAC125] Length = 143 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI ++ + + + D ++ + + + Sbjct: 97 GYIYKPNVNVVEEMANMISASRSYQTNVQVADAAKQMLSKTL 138 Score = 40.8 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKF-SEVVGAIKNDIDQK 55 F+I + A RL+T A N+SN +T+ +R + F +E+ A + + + Sbjct: 5 NVFDIAGSGMSAQNVRLNTTASNISNANTISSSQDKTYRARQPVFAAELTKASASASNPQ 64 Query: 56 ISFVASGKEYLSKEVGSFI 74 S V + + Sbjct: 65 GSAVGVKVLGIVESNKPLQ 83 >gi|289606849|emb|CBI60984.1| unnamed protein product [Sordaria macrospora] Length = 336 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV-VGAIKNDIDQKISFV 59 M +IG + A + L+T +DN++N T G+ +EV VG+ + ++ Sbjct: 40 MSDLLSIGASGVRAYQSALTTTSDNIANAGTTGYVRRTTSLAEVGVGSSRQITGSGVTVT 99 Query: 60 ASGKEYLSKEVGSFISTGTE 79 + + ++ Sbjct: 100 GVARSADIYRSQEVRQSNSD 119 >gi|114777912|ref|ZP_01452826.1| probable flagellar hook-associated protein [Mariprofundus ferrooxydans PV-1] gi|114551699|gb|EAU54251.1| probable flagellar hook-associated protein [Mariprofundus ferrooxydans PV-1] Length = 575 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 25/64 (39%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S NI ++ ++ ++ V+ N++N +T G+ + + + +G Sbjct: 4 DSLNIAASSLQTQQKSINVVSHNIANANTAGYSRQVADIATLTPESVGGLSLGRGVNVTG 63 Query: 63 KEYL 66 + Sbjct: 64 ISRI 67 Score = 40.8 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 S N+ E+ MI + + + +I + M + Sbjct: 535 SGVNTDEELVSMIKFQRAYEASAKIITTTNQMMDSLL 571 >gi|320354350|ref|YP_004195689.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus DSM 2032] gi|320122852|gb|ADW18398.1| flagellar hook-associated protein FlgK [Desulfobulbus propionicus DSM 2032] Length = 465 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + N G + L ++ + V +N++N +T G+ + + ++ D + Q ++ Sbjct: 5 LNALNAGKTSLLTNQKSIEIVGNNIANVNTEGYSRQRAELMQIPAVNFGDFFVGQGVTVS 64 Query: 60 ASGKEYLSKEVGSFIS 75 ++Y Sbjct: 65 NVSRDYSVFINRQLQE 80 Score = 41.2 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 15/87 (17%) Query: 153 KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQ 212 +++AT+G+ + + ++ G+ S + EM Sbjct: 391 QMVATVGIEAARNDLAL------------QGAQDAAVQLQNLRDGY---SGVSLEEEMID 435 Query: 213 MIHLTQKFNSITTLIDENEKSMLEAIR 239 +I + F S + ++ M ++ Sbjct: 436 LIQYQRGFESSAKFLATVDEMMNALLQ 462 >gi|33592477|ref|NP_880121.1| flagellar basal body rod protein FlgC [Bordetella pertussis Tohama I] gi|33572123|emb|CAE41665.1| flagellar basal-body rod protein FlgC [Bordetella pertussis Tohama I] gi|332381894|gb|AEE66741.1| flagellar basal body rod protein FlgC [Bordetella pertussis CS] Length = 139 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 23/45 (51%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ N + + E MI ++ + + +++ ++ ML+ + Sbjct: 91 AQGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTLT 135 Score = 38.9 bits (90), Expect = 0.69, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 + F I +A A QR++ A NM+N D+V +R +V F V Q+ Sbjct: 4 LSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQ-VNPPAGQAFGQE 62 Query: 56 ISFVASGKEYLSKEV 70 I V + Sbjct: 63 IGGVRVAGVVEDQSP 77 >gi|114330367|ref|YP_746589.1| flagellar hook-associated protein FlgK [Nitrosomonas eutropha C91] gi|114307381|gb|ABI58624.1| flagellar hook-associated protein FlgK [Nitrosomonas eutropha C91] Length = 467 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 1 MQTS-FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M S N+G++ A + L T + N+SN T G+ + + + + F+ Sbjct: 1 MANSIMNVGVSGLQAAQTALLTTSHNISNATTPGYNRQQA-----IQSTNTPLPHSNGFI 55 Query: 60 ASGKEYLSKE 69 G + + + Sbjct: 56 GRGVQVSTVQ 65 >gi|89056688|ref|YP_512139.1| flagellar basal body rod protein FlgC [Jannaschia sp. CCS1] gi|88866237|gb|ABD57114.1| flagellar basal-body rod protein FlgC [Jannaschia sp. CCS1] Length = 130 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + ++ + A QRL+ V++N++N DT G++ F ++ V +G Sbjct: 6 NALSVAASGMRAQTQRLTHVSENIANADTPGYQRKITSFE-----VERGFSAVEGQVRTG 60 Query: 63 KEYLSKEV 70 L + Sbjct: 61 PVRLDQTA 68 Score = 38.5 bits (89), Expect = 0.90, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 163 VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNS 222 +G VR + P + + + G E SN + + E+ + + + Sbjct: 50 FSAVEGQVRTGPVRLDQTALPVIFDPSHPMADEAGSYEGSNVDLVIELADAREANRSYEA 109 Query: 223 ITTLIDENEKSMLEAIRNI 241 + D+ + M ++ ++ Sbjct: 110 NLRIFDQI-RQMSSSLNDL 127 >gi|70729010|ref|YP_258744.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens Pf-5] gi|68343309|gb|AAY90915.1| flagellar hook-associated protein FlgK [Pseudomonas fluorescens Pf-5] Length = 683 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + NIG++ A + L T +N++N DT G+ + V K F+ + Sbjct: 1 MSLLNIGMSGLAASQTSLMTTGNNIANADTAGYSRQQT-----VQGTKASSQNGNVFIGT 55 Query: 62 GKEYLS 67 G Sbjct: 56 GTTLAD 61 >gi|330502732|ref|YP_004379601.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina NK-01] gi|328917018|gb|AEB57849.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina NK-01] Length = 147 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F + +++ K ML+ + + Sbjct: 108 NVNVVEEMADMISASRAFQTNVEMMNTA-KQMLQRVLTLG 146 Score = 44.6 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKND 51 FNI A RL+T++ N++N +TV +R F+ V + Sbjct: 7 FNIAGTGMSAQSTRLNTISSNIANAETVSSSLDQTYRARHPVFATVFQQAQGG 59 >gi|291278935|ref|YP_003495770.1| flagellar basal-body rod protein FlgC [Deferribacter desulfuricans SSM1] gi|290753637|dbj|BAI80014.1| flagellar basal-body rod protein FlgC [Deferribacter desulfuricans SSM1] Length = 134 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 21/36 (58%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM M+ ++ + + T+++ ++ L+A+ Sbjct: 94 NINPIEEMVNMLEASRSYEANVTVLNTAKQLALKAL 129 Score = 41.6 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 6/49 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGA 47 I A R++ ++ N++N +T G ++ +V F ++ Sbjct: 7 LKIASTGLSAQRIRINVISSNLANANTTRTEDGTPYQKREVIFRTILDG 55 >gi|17548564|ref|NP_521904.1| flagellar basal-body rod protein FlgC [Ralstonia solanacearum GMI1000] gi|300693335|ref|YP_003749308.1| flagellar basal-body rod protein flgc (proximal rod protein) [Ralstonia solanacearum PSI07] gi|17430812|emb|CAD17494.1| probable flagellar basal-body rod protein flgc [Ralstonia solanacearum GMI1000] gi|299075372|emb|CBJ34667.1| Flagellar basal-body rod protein flgC (proximal rod protein) [Ralstonia solanacearum PSI07] Length = 135 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM MI ++ + + + + + +A+ Sbjct: 81 PGNPLADAD------GYVTMPNVDVVDEMVNMISASRSYQANVEVANTTKTMAAKALT 132 Score = 36.2 bits (83), Expect = 4.4, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQKISF 58 ++ +A A +R++ VA N++N G +R +V FS + D Sbjct: 7 MDVAGSALTAQSKRMNVVASNLANAESVTGPDGTAYRAKQVVFS---PEQETDGYATGVS 63 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 V E + G L Sbjct: 64 VDRVVEDTVTPMKRMHQPGNPL 85 >gi|238782790|ref|ZP_04626819.1| Flagellar basal-body rod protein flgC [Yersinia bercovieri ATCC 43970] gi|238716213|gb|EEQ08196.1| Flagellar basal-body rod protein flgC [Yersinia bercovieri ATCC 43970] Length = 121 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 12/91 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 S G+ I + + V + + P PL D G++ N N + Sbjct: 40 SAPGQEIGGVRVSDV------MESSDPDRMVYEPGNPLADDK------GYVRMPNVNVVS 87 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 EM I ++ + + +++ + ML+ + Sbjct: 88 EMVNTISASRSYQANVEVLNTAKSMMLKTLT 118 >gi|68164540|gb|AAY87269.1| predicted flagellar hook-associated protein 1 [uncultured bacterium BAC17H8] Length = 1404 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F+IG + + Q L+ N++N +T G++ + E+ A + ++ Sbjct: 1 MANLFDIGRSGLNSYRQGLAITGQNIANINTDGYKRRGAELEELSAAKASVLESSQGSGM 60 Query: 61 SGKEYLSKEV 70 + + Sbjct: 61 GVRIGTIRRA 70 >gi|302390139|ref|YP_003825960.1| flagellar hook-associated protein FlgK [Thermosediminibacter oceani DSM 16646] gi|302200767|gb|ADL08337.1| flagellar hook-associated protein FlgK [Thermosediminibacter oceani DSM 16646] Length = 465 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 1 MQTSFN---IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 M +SF I A A ++ V+ N++N +T G+ + + Sbjct: 1 MYSSFFGIEIAKRALFAQQRAQENVSHNVANANTPGYSRQRPVMEATYTKPWAGMYTAAG 60 Query: 58 FVASGKEY 65 V +G Sbjct: 61 AVQAGTGV 68 Score = 39.6 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S+ + EM +MI +N+ +I ++ + + + Sbjct: 421 SSVSLDEEMSRMIMYQHAYNAAARMITAIDEMLDTIVSRMG 461 >gi|297617135|ref|YP_003702294.1| flagellar basal-body rod protein FlgB [Syntrophothermus lipocalidus DSM 12680] gi|297144972|gb|ADI01729.1| flagellar basal-body rod protein FlgB [Syntrophothermus lipocalidus DSM 12680] Length = 138 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 13/85 (15%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL---- 66 A R +A+N++N DT G++ ++V F E + + + + + +L Sbjct: 17 ALDGAMLRQKVIANNLANVDTPGYKAMEVTFEEQLKNSMKEAGSEYNLKTTHPRHLQIPN 76 Query: 67 --SKEVG-------SFISTGTELDF 82 S +VG +F + G +D Sbjct: 77 ISSFQVGINVAEGYTFRNDGNSVDI 101 >gi|146307871|ref|YP_001188336.1| flagellar basal body rod protein FlgC [Pseudomonas mendocina ymp] gi|145576072|gb|ABP85604.1| flagellar basal-body rod protein FlgC [Pseudomonas mendocina ymp] Length = 147 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F + +++ K ML+ + + Sbjct: 108 NVNVVEEMADMISASRAFQTNVEMMNTA-KQMLQRVLTLG 146 Score = 44.6 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKND 51 FNI A RL+T++ N++N +TV +R F+ V + Sbjct: 7 FNIAGTGMSAQSTRLNTISSNIANAETVSSSIDQTYRARHPVFATVFQQAQGG 59 >gi|71280491|ref|YP_268220.1| flagellar basal-body rod protein FlgC [Colwellia psychrerythraea 34H] gi|71146231|gb|AAZ26704.1| flagellar basal-body rod protein FlgC [Colwellia psychrerythraea 34H] Length = 143 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM MI ++ + + L + + + + ++ Sbjct: 97 GYIYKPNVNVIEEMTNMISASRSYQTNVQLAESAKNMLNKTLQ 139 >gi|332981429|ref|YP_004462870.1| flagellar basal-body rod protein FlgC [Mahella australiensis 50-1 BON] gi|332699107|gb|AEE96048.1| flagellar basal-body rod protein FlgC [Mahella australiensis 50-1 BON] Length = 129 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 20/41 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 G++ N + EM M+ T+ + + T+ID + + A Sbjct: 84 GYVRMPNVDVTEEMVDMVSATRSYEANVTVIDAAKNMAMRA 124 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 15/32 (46%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M + N + A R+ ++ N++N +T Sbjct: 3 MFDAINNSASGLTAQRLRMDIISQNIANANTT 34 >gi|315127356|ref|YP_004069359.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas sp. SM9913] gi|315015870|gb|ADT69208.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas sp. SM9913] Length = 136 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 12/97 (12%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A L QR +A N++N DT G++ + F+ + K++ Sbjct: 1 MAISFDKALGVHPHAMLIRSQRAEMLATNIANADTPGYKAKDIDFASALKTAKSNQLSGN 60 Query: 57 SFVASGKEYL---SKEVGS--FISTGTELDFALEGDA 88 + V + ++++ ++ VGS T + D GD Sbjct: 61 TMVRTNEKHIAGGTRSVGSNELFRTPNQTD---TGDG 94 >gi|146281769|ref|YP_001171922.1| flagellar basal body rod protein FlgC [Pseudomonas stutzeri A1501] gi|145569974|gb|ABP79080.1| flagellar basal-body rod protein FlgC [Pseudomonas stutzeri A1501] Length = 134 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 7/75 (9%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + + P P D + G++ N N + EM MI ++ F + L+ Sbjct: 66 GVVEDQGELQARYEPNHPAAD------ESGYVYYPNVNVVEEMADMISASRAFQTNAELM 119 Query: 228 DENEKSMLEAIRNIA 242 + K+ML+ + + Sbjct: 120 NTA-KTMLQKVLTLG 133 Score = 39.6 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 12/75 (16%) Query: 12 QLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKND------IDQKISFV 59 A RL+T++ N++N +TV +R F+ V Q + Sbjct: 1 MSAQSTRLNTISSNIANAETVSSSVDQTYRARHPVFATVFQQAGGQPNESLFAGQDQAGA 60 Query: 60 ASGKEYLSKEVGSFI 74 + ++ G Sbjct: 61 GVQVLGVVEDQGELQ 75 >gi|302342345|ref|YP_003806874.1| flagellar basal-body rod protein FlgC [Desulfarculus baarsii DSM 2075] gi|301638958|gb|ADK84280.1| flagellar basal-body rod protein FlgC [Desulfarculus baarsii DSM 2075] Length = 147 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 19/36 (52%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N + + EM +I T+ + + + + ++ L+A+ Sbjct: 108 NVDVVTEMVNLISATRSYEANVSAVGASKNMALKAL 143 Score = 42.3 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 TS I + A RL+ ++ N++N +T Sbjct: 5 TSMEISASGLSAQRTRLNIISQNLANAETT 34 >gi|258592507|emb|CBE68816.1| flagellar basal-body rod protein FlgC (cell-proximal rod protein) [NC10 bacterium 'Dutch sediment'] Length = 140 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 7/109 (6%) Query: 130 PIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDL 189 PI P + + +G +G + + ++ S PN+ P Sbjct: 35 PIGGPYRRKGVVLGTRGT----SAFEGLLNAGAAPGGVEVLKIVESQAPPNLVYNPSHPD 90 Query: 190 SGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G++ N N + EM ++ ++ + + + I + M + + Sbjct: 91 ADTA---GYVAMPNINPVMEMVDLMSASRAYEANISAIQIAKSMMTKTL 136 >gi|78485814|ref|YP_391739.1| flagellar basal-body rod protein FlgC [Thiomicrospira crunogena XCL-2] gi|78364100|gb|ABB42065.1| Flagellar basal-body rod protein FlgC [Thiomicrospira crunogena XCL-2] Length = 136 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 24/43 (55%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM M+ ++ + + +++ +++ +L I+ Sbjct: 91 GYIYRPNVNVVEEMANMMSASRSYETNIEVLNTSKQLLLRTIQ 133 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 M + +I A RL+T+A NM+N D++ +R+ + F ++ Sbjct: 3 MFPTLDISATGMHAQTVRLNTIASNMANVDSISSNSDETYRSKQPVFKTIMDNETGRPAG 62 Query: 55 KI 56 + Sbjct: 63 GV 64 >gi|327480026|gb|AEA83336.1| flagellar hook-associated protein FlgK [Pseudomonas stutzeri DSM 4166] Length = 685 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +IGL+ A + +LS N++N +T G+ A ++ ++ Sbjct: 1 MADLLSIGLSGLAASKTQLSITGHNITNVNTPGYSRQDAT-----QATRSPQFSGAGYIG 55 Query: 61 SGKEYLS 67 SG + Sbjct: 56 SGTTLVD 62 >gi|312109475|ref|YP_003987791.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y4.1MC1] gi|311214576|gb|ADP73180.1| flagellar hook-associated protein FlgK [Geobacillus sp. Y4.1MC1] Length = 534 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 1 MQTSFN---IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 M ++F+ + + L A N++N +T G+ +V F E +++ Sbjct: 1 MLSTFHGLEVAKRGMFTQQAALYVTAHNIANANTPGYSRQRVNFVETEPFPPASMNRPQI 60 Query: 58 FVASGKEYLSKEVGSFIS 75 G E GS Sbjct: 61 PGQMGTGV---EAGSIQR 75 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 19/41 (46%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S+ + EM MI +N+ +I ++ + + I ++ Sbjct: 490 SSVSLDEEMTNMIKFQHAYNAAARMITAIDEMLDKIINDMG 530 >gi|170289254|ref|YP_001739492.1| flagellar basal-body rod protein FlgB [Thermotoga sp. RQ2] gi|281412856|ref|YP_003346935.1| flagellar basal-body rod protein FlgB [Thermotoga naphthophila RKU-10] gi|170176757|gb|ACB09809.1| flagellar basal-body rod protein FlgB [Thermotoga sp. RQ2] gi|281373959|gb|ADA67521.1| flagellar basal-body rod protein FlgB [Thermotoga naphthophila RKU-10] Length = 127 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 9/91 (9%) Query: 1 MQTS-FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--------AIKND 51 M S F A R + + N++N T G++ V F E++ + N+ Sbjct: 1 MFNSNFYTLKQAMDVALLRQNVHSLNIANVSTPGYKRKYVAFEELLKESEMKLKLSKTNE 60 Query: 52 IDQKISFVASGKEYLSKEVGSFISTGTELDF 82 S L + + G +D Sbjct: 61 KHLIGSKSVVEPRVLVDNTTTMRNDGNNVDI 91 >gi|332305612|ref|YP_004433463.1| flagellar basal-body rod protein FlgB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172941|gb|AEE22195.1| flagellar basal-body rod protein FlgB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 133 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 14/93 (15%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV--------ASGKEYLSKE 69 R+ +A N++N +T G++ + F + + + ++ Q ++ G + Sbjct: 22 RMEVLAGNLANANTPGYKARDINFQDAMRSAQSGRSQNLTRTHENHIKGNMQGSGEMQFR 81 Query: 70 VGSFIST--GTELDFALEGDAWFALESPRGIIL 100 + + T G +D +E +A+ G+ Sbjct: 82 ISNQPDTGDGNNVDVQVERNAFL----DNGLRY 110 >gi|120598230|ref|YP_962804.1| flagellar basal body rod protein FlgC [Shewanella sp. W3-18-1] gi|146293692|ref|YP_001184116.1| flagellar basal body rod protein FlgC [Shewanella putrefaciens CN-32] gi|120558323|gb|ABM24250.1| flagellar basal-body rod protein FlgC [Shewanella sp. W3-18-1] gi|145565382|gb|ABP76317.1| flagellar basal-body rod protein FlgC [Shewanella putrefaciens CN-32] gi|319427091|gb|ADV55165.1| flagellar basal-body rod protein FlgC [Shewanella putrefaciens 200] Length = 138 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 GF+ N N M EM MI ++ + + + + + + + Sbjct: 93 GFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTL 134 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F++ + A RL+T A N++N D+V +R+ F + ++ Sbjct: 7 FDVAGSGMSAQSVRLNTTASNIANADSVSSSIDKTYRSRHPIFEAEMAKAQSQQQTSQGV 66 Query: 59 VASG 62 G Sbjct: 67 TVRG 70 >gi|146307863|ref|YP_001188328.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp] gi|145576064|gb|ABP85596.1| flagellar hook-associated protein FlgK [Pseudomonas mendocina ymp] Length = 681 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M NIGL+ A + L+ N+ N +T GF + V + ++ Sbjct: 1 MADLLNIGLSGLSASKTSLAVTGHNIVNVNTPGFSRQEA-----VQTTRTPQFSGAGYIG 55 Query: 61 SGKEYLS 67 SG + Sbjct: 56 SGTTLVD 62 >gi|240145510|ref|ZP_04744111.1| flagellar basal-body rod protein FlgB [Roseburia intestinalis L1-82] gi|257202325|gb|EEV00610.1| flagellar basal-body rod protein FlgB [Roseburia intestinalis L1-82] gi|291535999|emb|CBL09111.1| flagellar basal-body rod protein FlgB [Roseburia intestinalis M50/1] gi|291538493|emb|CBL11604.1| flagellar basal-body rod protein FlgB [Roseburia intestinalis XB6B4] Length = 131 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A A R + + +N++N DT G++ V F V+ K S + L++++ Sbjct: 16 AADASWMRENVITNNIANIDTPGYKRQDVDFESVLQKALG--KTKYSSLDKKVRELNQDL 73 Query: 71 GSFISTGTELDFA 83 G +T + D A Sbjct: 74 GKLTTT-SYTDAA 85 >gi|167623359|ref|YP_001673653.1| flagellar basal body rod protein FlgC [Shewanella halifaxensis HAW-EB4] gi|167353381|gb|ABZ75994.1| flagellar basal-body rod protein FlgC [Shewanella halifaxensis HAW-EB4] Length = 138 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + + + + + +R Sbjct: 93 GFIYKPNVNVMEEMANMISASRSYQMNVQVTEAAKSMLQQTLR 135 Score = 40.0 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG--FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N +VG +R F + + Sbjct: 5 NIFNVAGSGMSAQSVRLNTTASNIANADSVSSSVGETYRARHPIFEAEMSKAQQHQSASA 64 Query: 57 SFVASG 62 S G Sbjct: 65 SVAVKG 70 >gi|157371209|ref|YP_001479198.1| flagellar basal body rod protein FlgC [Serratia proteamaculans 568] gi|157322973|gb|ABV42070.1| flagellar basal-body rod protein FlgC [Serratia proteamaculans 568] Length = 134 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 12/91 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 S G+ + + V R P PL D G++ N + + Sbjct: 53 SAAGQPTGGVRVAQVVDDPAPER------LVYQPGNPLADGK------GYVRMPNVDVVG 100 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 EM I ++ + + +++ + M++ + Sbjct: 101 EMVNTISASRSYQANVEVLNTTKSMMMKTLT 131 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 17/102 (16%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A NM+N D+V +R +V F + + Q Sbjct: 4 LNIFDISGSALSAQSQRLNVSASNMANADSVSGPDGQPYRAKQVVFE-----VASAAGQP 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTELDFALEGDAWFALESPR 96 V + + G L +G + + P Sbjct: 59 TGGVRVAQVVDDPAPERLVYQPGNPL---ADGKGY--VRMPN 95 >gi|332533177|ref|ZP_08409046.1| flagellar basal-body rod protein FlgC [Pseudoalteromonas haloplanktis ANT/505] gi|332037459|gb|EGI73913.1| flagellar basal-body rod protein FlgC [Pseudoalteromonas haloplanktis ANT/505] Length = 143 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI ++ + + + D ++ + + + Sbjct: 97 GYIYKPNVNVVEEMANMISASRSYQTNVQVADAAKQMLSKTL 138 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKF-SEVVGAIKNDIDQK 55 F+I + A RL+T A N+SN +T+ +R + F +E+ A + +Q+ Sbjct: 5 NVFDIAGSGMSAQNVRLNTTASNISNANTISSSQDKTYRARQPVFAAELTKASASVSNQQ 64 Query: 56 ISFVASGKEYLSKEVGSFI 74 S V + + Sbjct: 65 GSAVGVKVLGIVESDAPLQ 83 >gi|157376210|ref|YP_001474810.1| flagellar hook-associated protein FlgK [Shewanella sediminis HAW-EB3] gi|157318584|gb|ABV37682.1| flagellar hook-associated protein FlgK [Shewanella sediminis HAW-EB3] Length = 638 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 NI LA + +L+ ++N++N +T G+ + S + Sbjct: 3 MNLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSLESQRAGS 52 >gi|258592508|emb|CBE68817.1| putative Flagellar basal-body rod protein flgB [NC10 bacterium 'Dutch sediment'] Length = 120 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 13 LALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGS 72 A R +A N++N DT G+R ++V FSE + + ++ + + V + VG+ Sbjct: 17 RAASLRHQVLARNIANIDTPGYRPMEVDFSEEL-RLASEAGEPPAMVVRTAVAADRSVGA 75 Query: 73 FISTGTELDF 82 G +D Sbjct: 76 GRYDGNAVDL 85 >gi|322832562|ref|YP_004212589.1| flagellar basal-body rod protein FlgC [Rahnella sp. Y9602] gi|321167763|gb|ADW73462.1| flagellar basal-body rod protein FlgC [Rahnella sp. Y9602] Length = 134 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 12/90 (13%) Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 G+ + + V +R P P+ D G+++ N + + E Sbjct: 54 APGQETGGVKVAQVVDDPAPMR------MVYEPGNPMADAK------GYVQMPNVDVVSE 101 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 M I ++ + + +++ + M++ + Sbjct: 102 MVNTISASRSYQANVEVLNTTKSLMMKTLT 131 Score = 38.5 bits (89), Expect = 0.87, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQ 54 M F+I +A A QRL+ A NM+N G ++ +V F + Sbjct: 3 MLGIFDIAGSALAAQSQRLNVSASNMANADSVTGPDGKPYKAKQVVFQVDAAPGQETGGV 62 Query: 55 KISFV 59 K++ V Sbjct: 63 KVAQV 67 >gi|187926956|ref|YP_001893301.1| flagellar basal-body rod protein FlgC [Ralstonia pickettii 12J] gi|241665285|ref|YP_002983644.1| flagellar basal-body rod protein FlgC [Ralstonia pickettii 12D] gi|187728710|gb|ACD29874.1| flagellar basal-body rod protein FlgC [Ralstonia pickettii 12J] gi|240867312|gb|ACS64972.1| flagellar basal-body rod protein FlgC [Ralstonia pickettii 12D] Length = 135 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM MI ++ + + + + + +A+ Sbjct: 81 PGNPLADAD------GYVTMPNVDVVDEMVNMISASRSYQANVEVANTTKTMAAKALT 132 Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT------DTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 ++ +A A +R++ VA N++N + +R +V F+ V + + Sbjct: 7 MDVAGSALTAQSKRMNVVASNLANAESVTGPNGTAYRAKQVVFTPVQESDDYATGVSVDR 66 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 V K G L Sbjct: 67 VVEDTVTPMKR---MHQPGNPL 85 >gi|323705448|ref|ZP_08117023.1| flagellar basal-body rod protein FlgC [Thermoanaerobacterium xylanolyticum LX-11] gi|323535350|gb|EGB25126.1| flagellar basal-body rod protein FlgC [Thermoanaerobacterium xylanolyticum LX-11] Length = 149 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 19/36 (52%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI T+ + + T ++ + + +A+ Sbjct: 109 NVNIVSEMVDMISATRAYEANVTAVNSTKSMIEKAL 144 Score = 43.1 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 20/95 (21%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRT---------IKVKFSEVVG 46 S +I A R+ ++ N++N DT G +R + FS+++ Sbjct: 4 LNSIDISATGLTAERLRMDVISQNIANVDTTRTSNGGPYRRKLVVLKEIDNQSSFSDMLN 63 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELD 81 A K S V +G E +S E + D Sbjct: 64 AAK-----GSSTVGNGVEVVSIEEDNKTPFNRVYD 93 >gi|254437430|ref|ZP_05050924.1| conserved domain protein [Octadecabacter antarcticus 307] gi|198252876|gb|EDY77190.1| conserved domain protein [Octadecabacter antarcticus 307] Length = 1436 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + F IG +A A Q L+ N+ N +T G+R +EV G ++++++ S V Sbjct: 1 MASLFEIGRSAINAQRQALNVTGQNIVNANTEGYRRRDANLTEVFG-VQSELNSMTSQVG 59 Query: 61 SGKE 64 G + Sbjct: 60 LGVK 63 >gi|150390490|ref|YP_001320539.1| flagellar basal-body rod protein FlgB [Alkaliphilus metalliredigens QYMF] gi|149950352|gb|ABR48880.1| flagellar basal-body rod protein FlgB [Alkaliphilus metalliredigens QYMF] Length = 136 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%) Query: 1 MQTSFNIGL----AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 M + +A A R +++N++N +T F+ V+F + Sbjct: 1 MTNGLYSNINLLNSAMSASWVRNEAISNNIANANTPNFKKSTVEFETHL 49 >gi|259907632|ref|YP_002647988.1| Flagellar basal-body rod protein, FlgC [Erwinia pyrifoliae Ep1/96] gi|224963254|emb|CAX54738.1| Flagellar basal-body rod protein, FlgC [Erwinia pyrifoliae Ep1/96] gi|283477474|emb|CAY73390.1| Flagellar basal-body rod protein flgC [Erwinia pyrifoliae DSM 12163] gi|310764862|gb|ADP09812.1| Flagellar basal-body rod protein, FlgC [Erwinia sp. Ejp617] Length = 134 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P PL D ++G++ N N + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLAD------QQGYVRMPNVNVVDEMVNTLSASRSYQANVEVMNSAKAMMLKTL 130 >gi|293395581|ref|ZP_06639864.1| flagellar basal-body rod protein FlgC [Serratia odorifera DSM 4582] gi|291421900|gb|EFE95146.1| flagellar basal-body rod protein FlgC [Serratia odorifera DSM 4582] Length = 134 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + G VR + P + + + +G++ Sbjct: 36 GPDGQPYRAKQVVFEVA-AAPGQPTGGVRVASIVDDPAPERLVFQPGNPLADAKGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM I ++ + + +++ + M++ + Sbjct: 95 NVDVVGEMVNTISASRSYQANVEVLNTTKSMMMKTLT 131 Score = 35.0 bits (80), Expect = 8.4, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A NM+N D+V +R +V F V A Sbjct: 4 LNIFDISGSALSAQSQRLNVSASNMANADSVSGPDGQPYRAKQVVFE--VAAAPGQPTGG 61 Query: 56 ISFVASGKEYLSKEVGSFISTGTEL 80 + + + + + G L Sbjct: 62 VRVASIVDDPAPERL--VFQPGNPL 84 >gi|167465319|ref|ZP_02330408.1| Flagellar basal body protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 136 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 21/96 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S A R +A+N++N DT F+ V F E++ + + Sbjct: 12 MERSL-------DASALRQRVIANNVANVDTPQFKRSDVLFEELLQNEITGSVKPLEGYR 64 Query: 61 S--------------GKEYLSKEVGSFISTGTELDF 82 + G + + E + + G +D Sbjct: 65 TDPRHFKIGQPSLPEGAQISTDEHTAMNNNGNNVDM 100 >gi|331269312|ref|YP_004395804.1| flagellar basal-body rod protein FlgC [Clostridium botulinum BKT015925] gi|329125862|gb|AEB75807.1| flagellar basal-body rod protein FlgC [Clostridium botulinum BKT015925] Length = 145 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI T+ + + T I+ ++ ++A+ Sbjct: 100 GYVLMPNVNILNEMADMIAATRAYEANVTAINSSKNMFMKAL 141 Score = 35.8 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV-G-------FRTIKVKFSE 43 +S I + A R+ T++ N++N T G +R F E Sbjct: 5 SSLRISASGLSAERLRMDTISSNITNFKTTRGKDGQKEPYRRKIAVFQE 53 >gi|317133492|ref|YP_004092806.1| flagellar basal-body rod protein FlgB [Ethanoligenens harbinense YUAN-3] gi|315471471|gb|ADU28075.1| flagellar basal-body rod protein FlgB [Ethanoligenens harbinense YUAN-3] Length = 125 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S + G A AL QR + ++DN++N DT G++ V F + + +D + S Sbjct: 9 SMDAGTKAIDALWQRSNVISDNVANADTPGYQQKSVSFEDQLSQAISDGSLSAGELDSVS 68 Query: 64 EYLSKEVGSFISTGTE 79 + E G+ S+ + Sbjct: 69 PQVQVESGTISSSDSN 84 >gi|157961169|ref|YP_001501203.1| flagellar basal body rod protein FlgC [Shewanella pealeana ATCC 700345] gi|157846169|gb|ABV86668.1| flagellar basal-body rod protein FlgC [Shewanella pealeana ATCC 700345] Length = 138 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N M EM MI ++ + + + + + + +R Sbjct: 93 GFIYKPNVNVMEEMANMISASRSYQMNVQVTEAAKSMLQQTLR 135 Score = 40.0 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG--FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ + A RL+T A N++N +VG +R F + + Sbjct: 5 NIFNVAGSGMSAQSVRLNTTASNIANADSVSSSVGETYRARHPIFEAEMSKAQQHQSAAQ 64 Query: 57 SFVASG 62 S G Sbjct: 65 SVAVKG 70 >gi|325274802|ref|ZP_08140830.1| flagellar basal body rod protein FlgC [Pseudomonas sp. TJI-51] gi|324100070|gb|EGB97888.1| flagellar basal body rod protein FlgC [Pseudomonas sp. TJI-51] Length = 87 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V +++ + P P + G++ N N + EM MI ++ F + L Sbjct: 18 KGIVEDQSNLEARYEPNHPAANKD------GYVYYPNVNVVEEMADMISASRAFQTNAEL 71 Query: 227 IDENEKSMLEAIRNIA 242 ++ KSM++ + + Sbjct: 72 MNTA-KSMMQKVLTLG 86 >gi|292489135|ref|YP_003532022.1| flagellar basal-body rod protein FlgC [Erwinia amylovora CFBP1430] gi|292900254|ref|YP_003539623.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291200102|emb|CBJ47228.1| flagellar basal-body rod protein [Erwinia amylovora ATCC 49946] gi|291554569|emb|CBA22184.1| Flagellar basal-body rod protein flgC [Erwinia amylovora CFBP1430] gi|312173293|emb|CBX81548.1| Flagellar basal-body rod protein flgC [Erwinia amylovora ATCC BAA-2158] Length = 134 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P PL D ++G++ N N + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLAD------QQGYVRMPNVNVVDEMVNTLSASRSYQANVEVMNSAKAMMLKTL 130 >gi|330808201|ref|YP_004352663.1| flagellar hook-associated protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376309|gb|AEA67659.1| flagellar hook-associated protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 688 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + NIG++ A + L T +N++N DT G+ + V K F+ S Sbjct: 1 MSLLNIGMSGLSASQTALVTTGNNIANVDTAGYSRQQT-----VQTTKASNQYGNVFIGS 55 Query: 62 GKEYLS 67 G Sbjct: 56 GTTLAD 61 >gi|296103613|ref|YP_003613759.1| Flagellar basal-body rod protein, FlgC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058072|gb|ADF62810.1| Flagellar basal-body rod protein, FlgC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 134 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 15/106 (14%) Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 P + + Q+ + + V P PL D Sbjct: 41 PYRARQVVFSVDASVGQEIGGVQVSDVVESSAPDRLVYE---------PGNPLAD----- 86 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 ++G++ N N M EM I ++ + + +++ + ML+ + Sbjct: 87 -EQGYVRMPNVNVMNEMVNTISASRSYQANVEVMNSAKSLMLKTLT 131 Score = 36.6 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 12/83 (14%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I +A A +RL+ A NM+N D+V +R +V FS + + Q+I Sbjct: 7 FDISGSAMAAQSRRLNVSASNMANADSVAGPDGQPYRARQVVFS-----VDASVGQEIGG 61 Query: 59 VASGKEYLSKEVGSFI-STGTEL 80 V S + G L Sbjct: 62 VQVSDVVESSAPDRLVYEPGNPL 84 >gi|169831913|ref|YP_001717895.1| flagellar basal-body rod protein FlgC [Candidatus Desulforudis audaxviator MP104C] gi|169638757|gb|ACA60263.1| flagellar basal-body rod protein FlgC [Candidatus Desulforudis audaxviator MP104C] Length = 139 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 11/71 (15%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 SF I + A RL +++N++N T G +R F++ + + Sbjct: 5 KSFGISGSGMTAERLRLDLISNNIANAHTTRTREGGPYRREVPVFAQYLERF-----RGR 59 Query: 57 SFVASGKEYLS 67 F +G + Sbjct: 60 GFAGAGVRVTA 70 >gi|88813660|ref|ZP_01128889.1| hypothetical protein NB231_05371 [Nitrococcus mobilis Nb-231] gi|88789078|gb|EAR20216.1| hypothetical protein NB231_05371 [Nitrococcus mobilis Nb-231] Length = 652 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M F+ ++ LA ++ ++T A N++N +T G+ + + + + + + Sbjct: 1 MGDLFDNSISGLLAFQRAINTTAHNIANVNTAGYSRQRTELTARAPTEFGNGFVGNGVQA 60 Query: 59 VASGKEYLSKEVGSFIS 75 ++ + + + + Sbjct: 61 ASTNRLFNQTRQVAVQT 77 >gi|315127355|ref|YP_004069358.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas sp. SM9913] gi|315015869|gb|ADT69207.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Pseudoalteromonas sp. SM9913] Length = 143 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI ++ + + + D ++ + + + Sbjct: 97 GYIYKPNVNVVEEMANMISASRSYQTNVQVADAAKQMLSKTL 138 Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKF-SEVVGAIKNDIDQK 55 F+I + A RL+T A N+SN +T+ +R + F +E+ A + + + Sbjct: 5 NVFDIAGSGMSAQNVRLNTTASNISNANTISSSQNETYRARQPVFAAELTKASASASNPQ 64 Query: 56 ISFVASGKEYLSKEVGSFI 74 S V + + Sbjct: 65 GSAVGVKVLGVVESNKPLQ 83 >gi|322382306|ref|ZP_08056213.1| flagellar basal body rod protein FlgB-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153659|gb|EFX46034.1| flagellar basal body rod protein FlgB-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 137 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 21/96 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M+ S A R +A+N++N DT F+ V F E++ + + Sbjct: 13 MERSL-------DASALRQRVIANNVANVDTPQFKRSDVLFEELLQNEITGSVKPLEGYR 65 Query: 61 S--------------GKEYLSKEVGSFISTGTELDF 82 + G + + E + + G +D Sbjct: 66 TDPRHFKIGQPSLPEGAQISTDEHTAMNNNGNNVDM 101 >gi|332296506|ref|YP_004438429.1| flagellar basal-body rod protein FlgC [Thermodesulfobium narugense DSM 14796] gi|332179609|gb|AEE15298.1| flagellar basal-body rod protein FlgC [Thermodesulfobium narugense DSM 14796] Length = 134 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P P + G++E N N + EM +I+ ++ + + ++ + + + + Sbjct: 79 DPGNPEANAD------GYVEYPNVNPIREMVSLINASRSYEADLNVVSATKSMIGQTLDE 132 Query: 241 I 241 + Sbjct: 133 L 133 Score = 38.9 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 7/67 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-----DTVG--FRTIKVKFSEVVGAIKNDIDQ 54 + I + A ++ A+N++N D G F+ V+ E G + + Sbjct: 3 LRTLEIAGSGLTAQRLKMDVAANNLANAYSNVKDKNGQIFKRQIVELQESTGKDGSFLGV 62 Query: 55 KISFVAS 61 K++ + S Sbjct: 63 KVAGIIS 69 >gi|238796902|ref|ZP_04640406.1| Flagellar basal-body rod protein flgC [Yersinia mollaretii ATCC 43969] gi|238719162|gb|EEQ10974.1| Flagellar basal-body rod protein flgC [Yersinia mollaretii ATCC 43969] Length = 121 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 12/91 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 S G+ I + + V S R P PL D G++ N N + Sbjct: 40 SAPGQEIGGVRVGDVVESTEPDR------MVYEPANPLADDK------GYVRMPNVNVVS 87 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 EM I ++ + + +++ + ML+ + Sbjct: 88 EMVNTISASRSYQANVEVMNTAKSMMLKTLT 118 >gi|328475671|gb|EGF46420.1| flagellar basal body rod protein FlgB [Listeria monocytogenes 220] Length = 139 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 16/107 (14%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 L+ V++N++N +T F+ + F E G+ Q + G Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESFGSSLRASGQN----------SIESAG 61 Query: 72 SFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS 118 + T A ++ + T+ G + V++ Sbjct: 62 NLTKT-NTKHLAGTD-----IDETNAKVTTKSGSINEDGNNVNVTSE 102 >gi|299536009|ref|ZP_07049328.1| flagellar hook-associated protein FlgK [Lysinibacillus fusiformis ZC1] gi|298728614|gb|EFI69170.1| flagellar hook-associated protein FlgK [Lysinibacillus fusiformis ZC1] Length = 555 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S+ + EM MI Q +N+ +I ++++ + I + Sbjct: 511 SSVSLDEEMTNMITFQQAYNANARMITVVDETLDKIINGMG 551 Score = 43.9 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 7/78 (8%) Query: 2 QTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 S +GL + L T N+SN +T+G+ +V G ++Q I Sbjct: 1 MRSTFMGLEASKRGLFTQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPIY 60 Query: 58 FVASGKEYLSKEVGSFIS 75 G E GS Sbjct: 61 PGHLGTGV---EAGSIQR 75 >gi|299068730|emb|CBJ39969.1| FlgC: Flagellar basal-body rod protein [Ralstonia solanacearum CMR15] Length = 129 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM MI ++ + + + + + +A+ Sbjct: 75 PGNPLADAD------GYVTMPNVDVVDEMVNMISASRSYQANVEVANTTKTMAAKALT 126 Score = 35.8 bits (82), Expect = 5.8, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQKISF 58 ++ +A A +R++ VA N++N G +R +V FS + D Sbjct: 1 MDVAGSALTAQSKRMNVVASNLANAESVTGPDGTAYRAKQVVFS---PEQETDGYATGVS 57 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 V E + G L Sbjct: 58 VDRVVEDTVTPMKRMHQPGNPL 79 >gi|83747656|ref|ZP_00944692.1| FlgC [Ralstonia solanacearum UW551] gi|300696911|ref|YP_003747572.1| FlgC: flagellar basal-body rod protein [Ralstonia solanacearum CFBP2957] gi|83725708|gb|EAP72850.1| FlgC [Ralstonia solanacearum UW551] gi|299073635|emb|CBJ53155.1| FlgC: Flagellar basal-body rod protein [Ralstonia solanacearum CFBP2957] Length = 135 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM MI ++ + + + + + +A+ Sbjct: 81 PGNPLADAD------GYVTMPNVDVVDEMVNMISASRSYQANVEVANTTKTMAAKALT 132 Score = 37.3 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQKISF 58 ++ +A A +R++ VA N++N G +R +V FS G + Sbjct: 7 MDVAGSALTAQSKRMNVVASNLANAESVTGPDGTAYRAKQVVFSPEQGTDGYATGVSVDG 66 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 V K G L Sbjct: 67 VVEDTVTPMKR---MHQPGNPL 85 >gi|251797447|ref|YP_003012178.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. JDR-2] gi|247545073|gb|ACT02092.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. JDR-2] Length = 151 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + EM MI ++ + + T ++ ++ +A+ Sbjct: 106 GYVHMPNVDVAKEMVDMISASRSYEANVTALNASKAMFTKAL 147 Score = 35.0 bits (80), Expect = 8.4, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 19/69 (27%) Query: 12 QLALEQRLSTVADNMSNTDTV--G--------FRTIKVK---------FSEVVGAIKNDI 52 A R+ ++ N++N +T G ++ V FS+++ Sbjct: 14 LTAQRLRMDVISSNIANAETTRAGYVNGQFVPYKRKMVVLEPMTQNSSFSDLLNKQLEGT 73 Query: 53 DQKISFVAS 61 A+ Sbjct: 74 SGAQGVKAT 82 >gi|82702451|ref|YP_412017.1| flagellar basal-body rod protein FlgC [Nitrosospira multiformis ATCC 25196] gi|82410516|gb|ABB74625.1| flagellar basal-body rod protein FlgC [Nitrosospira multiformis ATCC 25196] Length = 139 Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ N N + EM MI ++ + + +++ + +L+ + Sbjct: 94 GFVTMPNVNVVEEMVDMISASRSYQNNVDMMNTAKTLLLKTLT 136 Score = 42.0 bits (98), Expect = 0.082, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 6/74 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 F + +A A QRL+ VA N++N D+ ++ +V F N I Sbjct: 5 NIFTVAGSAMTAQNQRLNVVASNLANADSAASSNGQPYKAKQVVFMSTSPLGDNGISNGT 64 Query: 57 SFVASGKEYLSKEV 70 V + Sbjct: 65 HGVRVSGVIEDQSP 78 >gi|281412143|ref|YP_003346222.1| flagellar hook-associated protein FlgK [Thermotoga naphthophila RKU-10] gi|281373246|gb|ADA66808.1| flagellar hook-associated protein FlgK [Thermotoga naphthophila RKU-10] Length = 858 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK 38 M N L A + ++ V N++N T G+ + Sbjct: 6 MFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQR 43 Score = 39.6 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI F++ +I ++ + I + Sbjct: 820 VSLDEEMANMIKYQHAFSAAAKVITAVDQMIQTVINMVG 858 >gi|170288661|ref|YP_001738899.1| flagellar hook-associated protein FlgK [Thermotoga sp. RQ2] gi|170176164|gb|ACB09216.1| flagellar hook-associated protein FlgK [Thermotoga sp. RQ2] Length = 858 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK 38 M N L A + ++ V N++N T G+ + Sbjct: 6 MFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQR 43 Score = 41.6 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI F++ +I ++ + I + Sbjct: 820 VSLDEEMANMIEYQHAFSAAAKVITAVDQMIQTVINMVG 858 >gi|148269976|ref|YP_001244436.1| flagellar hook-associated protein FlgK [Thermotoga petrophila RKU-1] gi|147735520|gb|ABQ46860.1| flagellar hook-associated protein FlgK [Thermotoga petrophila RKU-1] Length = 858 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK 38 M N L A + ++ V N++N T G+ + Sbjct: 6 MFGILNTALTGIHAHKLAMNVVGHNIANASTPGYSRQR 43 Score = 39.6 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI F++ +I ++ + I + Sbjct: 820 VSLDEEMANMIKYQHAFSAAAKVITAVDQMIQTVINMVG 858 >gi|251789166|ref|YP_003003887.1| flagellar basal body rod protein FlgC [Dickeya zeae Ech1591] gi|271500064|ref|YP_003333089.1| flagellar basal-body rod protein FlgC [Dickeya dadantii Ech586] gi|307131611|ref|YP_003883627.1| flagellar basal-body rod protein flgC [Dickeya dadantii 3937] gi|247537787|gb|ACT06408.1| flagellar basal-body rod protein FlgC [Dickeya zeae Ech1591] gi|270343619|gb|ACZ76384.1| flagellar basal-body rod protein FlgC [Dickeya dadantii Ech586] gi|306529140|gb|ADM99070.1| Flagellar basal-body rod protein flgC [Dickeya dadantii 3937] Length = 134 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM I ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAK------GYVRMPNVDPVNEMVNTISASRSYQANVEVLNTTKSMMLKTLT 131 Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A N++N G +R +V F + Q Sbjct: 4 LNIFDISGSALSAQSQRLNVSASNLANADSVTGPDGQPYRAKQVVFE-----VDAAPGQA 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V K + G L Sbjct: 59 TGGVKVAKVVEDPSPEKLVYQPGNPL 84 >gi|328958286|ref|YP_004375672.1| flagellar basal body rod protein FlgC [Carnobacterium sp. 17-4] gi|328674610|gb|AEB30656.1| flagellar basal body rod protein FlgC [Carnobacterium sp. 17-4] Length = 145 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 25/43 (58%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G+++ N N EM M+ + +++ T ++ +++ + +A++ Sbjct: 99 GYVQMPNVNMADEMIDMMTTLRTYDANVTAMNASKEMLTKALQ 141 Score = 40.4 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 7/71 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G---FRTIKVKFSEVVGAIKNDIDQK 55 S I + +L T++ N++N +T G + +V F E ++ + + Sbjct: 5 DSMQINASGLSLERLKLDTISTNIANVNTTRTEDGEGPYLKKEVVFEESFKQVETSLAGQ 64 Query: 56 ISFVASGKEYL 66 + + G + Sbjct: 65 GTEKSFGVKPT 75 >gi|297538894|ref|YP_003674663.1| flagellar basal-body rod protein FlgC [Methylotenera sp. 301] gi|297258241|gb|ADI30086.1| flagellar basal-body rod protein FlgC [Methylotenera sp. 301] Length = 135 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N EM MI ++ + + ++ + +L+ + Sbjct: 89 GYVTMPNVNVTEEMVNMISASRAYQNNVETMNAAKTMLLKTLT 131 Score = 41.6 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTD-------TVGFRTIKVKFSEVVGAIKNDIDQK 55 FNI +A A QRL+TVA N++N D T ++ +V FS + K Sbjct: 5 NVFNISGSAMSAQAQRLNTVASNLANADSATSANGTP-YKAKQVVFSATPTGSPDASGVK 63 Query: 56 I 56 + Sbjct: 64 V 64 >gi|84502401|ref|ZP_01000537.1| flagellar basal body rod protein [Oceanicola batsensis HTCC2597] gi|84389213|gb|EAQ02010.1| flagellar basal body rod protein [Oceanicola batsensis HTCC2597] Length = 136 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 12/84 (14%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 ++T+G+ S+D R ++ P P D ++GF++ SN + + EM M Sbjct: 61 VSTVGVSSID------RDDSDFSLRFEPSHPAAD------EQGFIKVSNVSPIMEMANMR 108 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 ++ + + L + + + I Sbjct: 109 EASRSYEANMNLFEAARRMRSQVI 132 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 14/97 (14%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKNDIDQKIS 57 I + LA +RL V++N++N + +R + F E++ D + +S Sbjct: 8 LTISASGMLAQGERLKVVSENVANASSTAMSPGEDPYRRKTITFEELL-----DSESGVS 62 Query: 58 FVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES 94 V S A + + + + Sbjct: 63 TVGVSSIDRDDSDFSLRF--EPSHPAADEQGFIKVSN 97 >gi|288554150|ref|YP_003426085.1| flagellar hook-associated protein FlgK [Bacillus pseudofirmus OF4] gi|288545310|gb|ADC49193.1| flagellar hook-associated protein FlgK [Bacillus pseudofirmus OF4] Length = 523 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A + + L T N++N +T G+ +V F++ +++ + G + Sbjct: 14 AMMTQQYALHTTGHNIANANTPGYSRQRVNFTQAEPYPSIGMNRPMLPGHLGTG---TKA 70 Query: 71 GSFIS 75 GS Sbjct: 71 GSIQR 75 Score = 40.4 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S+ + EM MI +N+ I ++ + I + Sbjct: 479 SSVSLDEEMTDMIKFQHAYNAAARNITMVDEMLDRIINGLG 519 >gi|83944175|ref|ZP_00956631.1| flagellar basal body rod protein [Sulfitobacter sp. EE-36] gi|83955124|ref|ZP_00963780.1| flagellar basal body rod protein [Sulfitobacter sp. NAS-14.1] gi|83840453|gb|EAP79626.1| flagellar basal body rod protein [Sulfitobacter sp. NAS-14.1] gi|83845042|gb|EAP82923.1| flagellar basal body rod protein [Sulfitobacter sp. EE-36] Length = 122 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKF 220 ++ S G +R + P P D + G+++ N N + EM M + + Sbjct: 47 AAIVQSAGVLRDDADFTLRYEPSHPAADQN------GYIKMPNVNPLIEMSNMREAARSY 100 Query: 221 NSITTLIDENEKSMLEAI 238 + +++D+ + + Sbjct: 101 EANLSMLDKARDMRRQLV 118 >gi|218135315|ref|ZP_03464119.1| hypothetical protein BACPEC_03220 [Bacteroides pectinophilus ATCC 43243] gi|217990700|gb|EEC56711.1| hypothetical protein BACPEC_03220 [Bacteroides pectinophilus ATCC 43243] Length = 606 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 T +G + + + L+T A N++N + G+ +V S Sbjct: 5 MTGLYVGSSGLRSAQTALNTTAHNLANVNVKGYTRQQVALSS 46 >gi|291526374|emb|CBK91961.1| flagellar hook-associated protein FlgK [Eubacterium rectale DSM 17629] gi|291526819|emb|CBK92405.1| flagellar hook-associated protein FlgK [Eubacterium rectale M104/1] Length = 617 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +IG +A + + +T A+N++N T G+ + + ++ + V +G Sbjct: 7 GLHIGSSALSSFQVATNTTANNIANVKTTGYTRQEAT---LQAKDAINVTARYGSVGTGV 63 Query: 64 EYLSKEV 70 S + Sbjct: 64 TVTSIKQ 70 >gi|302669847|ref|YP_003829807.1| flagellar hook-associated protein FlgK2 [Butyrivibrio proteoclasticus B316] gi|302394320|gb|ADL33225.1| flagellar hook-associated protein FlgK2 [Butyrivibrio proteoclasticus B316] Length = 615 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 19/37 (51%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 NI + A L+T A+N++N +T G+ KV Sbjct: 7 GLNIAASGLRASNASLNTTANNIANANTDGYSRQKVT 43 >gi|83647176|ref|YP_435611.1| flagellar basal body rod protein FlgB [Hahella chejuensis KCTC 2396] gi|83635219|gb|ABC31186.1| Flagellar basal body protein [Hahella chejuensis KCTC 2396] Length = 131 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN 50 M SF+ L A +R +A+N++N DT GFR + F V+ K+ Sbjct: 1 MAISFDKALGIHEQALNVRTRRAEVLANNIANADTPGFRARDIDFKAVLRQAKS 54 >gi|83312926|ref|YP_423190.1| flagellar hook-associated protein [Magnetospirillum magneticum AMB-1] gi|82947767|dbj|BAE52631.1| Flagellar hook-associated protein [Magnetospirillum magneticum AMB-1] Length = 858 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 N L+ L ++ L ++ N+ N +T G+ ++ V A Q+ + + Sbjct: 6 GLNSALSGLLTNQKGLDVISQNVVNVNTKGYVRKQMTPESRVVAGVGAGVQQGALTRNVD 65 Query: 64 EYLSKEVGSFISTGTELDF 82 E L +++ ST LD Sbjct: 66 EGLMRDIRRQTSTQGALDV 84 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 17/39 (43%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S N E+ MI+ Q +++ +I ++ + + Sbjct: 817 TSGVNLDEEVANMINFQQAYSASAKVISTLQEMLDTLVN 855 >gi|207111880|ref|ZP_03246042.1| flagellar basal body rod protein FlgG [Helicobacter pylori HPKX_438_CA4C1] Length = 36 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 208 YEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 EM +I + + + + I + +ML+ + ++ Sbjct: 1 EEMTDLITAQRAYEANSKSIQTAD-AMLQTVNSL 33 >gi|238922534|ref|YP_002936047.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC 33656] gi|238874206|gb|ACR73913.1| flagellar hook-associated protein FlgK [Eubacterium rectale ATCC 33656] Length = 617 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 +IG +A + + +T A+N++N T G+ + + ++ + V +G Sbjct: 7 GLHIGSSALSSFQVATNTTANNIANVKTTGYTRQEAT---LQAKDAINVTARYGSVGTGV 63 Query: 64 EYLSKEV 70 S + Sbjct: 64 TVTSIKQ 70 >gi|149375037|ref|ZP_01892810.1| Flagellar basal body protein [Marinobacter algicola DG893] gi|149360926|gb|EDM49377.1| Flagellar basal body protein [Marinobacter algicola DG893] Length = 132 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 12 QLALE---QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 Q ALE +R +A+N++N DT G++ V F ++ ++ + + Sbjct: 13 QHALEGRIKRAEVLANNLANADTPGYKARDVDFQAMMQKAQDSMSGFGMTRTHESHMDTS 72 Query: 69 EVGS 72 +G+ Sbjct: 73 SMGA 76 >gi|240145509|ref|ZP_04744110.1| flagellar basal-body rod protein FlgC [Roseburia intestinalis L1-82] gi|257202324|gb|EEV00609.1| flagellar basal-body rod protein FlgC [Roseburia intestinalis L1-82] gi|291536000|emb|CBL09112.1| flagellar basal-body rod protein FlgC [Roseburia intestinalis M50/1] gi|291538494|emb|CBL11605.1| flagellar basal-body rod protein FlgC [Roseburia intestinalis XB6B4] Length = 146 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 19/37 (51%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N++ EM +I T+ + + TT D + + A+ Sbjct: 107 NVNTVTEMTNLIDATRAYEANTTAFDATKSMVQAALN 143 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 +F+I + A R+ T+A N++N +T G +R V F+E + + Sbjct: 5 QAFDISASGMTAERFRMDTIAQNIANINTTRTEDGTPYRRKIVTFAEKTETPFSQYYETA 64 Query: 57 SFVASGKEYLSKEV 70 A G V Sbjct: 65 RARAVGNGVKVTSV 78 >gi|209695764|ref|YP_002263694.1| flagellar basal body rod protein FlgC [Aliivibrio salmonicida LFI1238] gi|208009717|emb|CAQ80021.1| flagellar basal-body rod protein FlgC [Aliivibrio salmonicida LFI1238] Length = 138 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + D ++ + +R Sbjct: 93 GYIFKPNVNVMEEMANMISASRSYQTNVQVADAGKQMLQSTLR 135 Score = 36.2 bits (83), Expect = 4.6, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + NM+N D+V ++ F + K D + Sbjct: 5 NVFNVAGSAMSAESVRLNTTSSNMANADSVSSSASETYKARHAIFGAELSKAKYKQDFTV 64 Query: 57 SFVASG 62 G Sbjct: 65 PVKVLG 70 >gi|103488393|ref|YP_617954.1| flagellar hook-associated protein [Sphingopyxis alaskensis RB2256] gi|98978470|gb|ABF54621.1| Flagellar hook-associated protein [Sphingopyxis alaskensis RB2256] Length = 441 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN 50 M IG + A + LST+ DN++N T G+ +++ E VG + Sbjct: 1 MSDLLGIGYSGLKAYSRALSTIGDNIANAQTPGYARRRLEMMEAVGGGNS 50 >gi|328470107|gb|EGF41018.1| flagellar hook-associated protein FlgK [Vibrio parahaemolyticus 10329] Length = 457 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N+++ +T G+ + + V N + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVASVNTPGYSRQQALMATVGDGKSNRLSSGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|326792655|ref|YP_004310476.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM 5427] gi|326543419|gb|ADZ85278.1| flagellar hook-associated protein FlgK [Clostridium lentocellum DSM 5427] Length = 645 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN+ L+ A ++ L ++N++N T G+ ++G + +G Sbjct: 6 FNVALSGLFAAQRGLHVTSNNITNASTDGYSRQ------ILGQRADTPLSGFGVGMTGTG 59 Query: 65 YLSKEV 70 ++ V Sbjct: 60 VMTTNV 65 Score = 35.8 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 5/41 (12%), Positives = 14/41 (34%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + E +I Q + + +++ + I + Sbjct: 603 SQVDLTEEFTSLIKYQQAYQASAKIMNTIDGIYETTIFKLG 643 >gi|296133052|ref|YP_003640299.1| flagellar basal-body rod protein FlgB [Thermincola sp. JR] gi|296031630|gb|ADG82398.1| flagellar basal-body rod protein FlgB [Thermincola potens JR] Length = 138 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 A A R +A+NM+N DT G++ + V F E Sbjct: 17 ALDAASMRNEAIANNMANVDTPGYKRVDVAFEE 49 >gi|212639569|ref|YP_002316089.1| flagellar basal body rod protein FlgC [Anoxybacillus flavithermus WK1] gi|212561049|gb|ACJ34104.1| Flagellar basal body rod protein FlgC [Anoxybacillus flavithermus WK1] Length = 145 Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM ++ T+ + + T+++ + +++A+ Sbjct: 100 GYVQLPNVDPLKEMVDLMSATRSYEANVTVLNATKGMLMKAL 141 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 16/75 (21%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKVK------FSEV 44 M SFN+ +A A R+ ++ NM+N DT G +R V FS Sbjct: 1 MFQSFNVSASALTAQRLRMDVISANMANVDTTRAKMVDGKWQPYRRKMVVMQPNESFSSF 60 Query: 45 VGAIKNDIDQKISFV 59 + N+ V Sbjct: 61 LNQAMNERSTGGVKV 75 >gi|332799170|ref|YP_004460669.1| flagellar basal-body rod protein FlgB [Tepidanaerobacter sp. Re1] gi|332696905|gb|AEE91362.1| flagellar basal-body rod protein FlgB [Tepidanaerobacter sp. Re1] Length = 134 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 21/35 (60%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +R +++N++N DT G++ + + F E++ N Sbjct: 20 KRYELISNNLANVDTPGYKRMGMSFEEILMNSLNQ 54 >gi|46204473|ref|ZP_00049952.2| COG1749: Flagellar hook protein FlgE [Magnetospirillum magnetotacticum MS-1] Length = 127 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 6/108 (5%) Query: 138 EIFNVGEKGEIS---QKGKVIA--TMGLYSVDMSQGFVRRE-NSGISPNIPPTPLEDLSG 191 +VGE G I+ G +I + + G + + L Sbjct: 17 NSVDVGENGVITGKYSNGSLIGLARVEVAQFVNPDGLKADSLGNYQQTVASGEAISGLKD 76 Query: 192 VTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 TV +E SN + E +MI Q +++ T ++ + + + + Sbjct: 77 TTVVGANVEQSNTDIAAEFSKMIVTQQAYSANTRVMSTAQTMISDLLN 124 >gi|150390489|ref|YP_001320538.1| flagellar basal-body rod protein FlgC [Alkaliphilus metalliredigens QYMF] gi|149950351|gb|ABR48879.1| flagellar basal-body rod protein FlgC [Alkaliphilus metalliredigens QYMF] Length = 147 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM MI T+ + + TT ++ + ++A+ Sbjct: 102 GYVLMPNVDIVVEMANMISATRAYEANTTALNATKSMAMKAL 143 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 + N + A R+ T++ N++N +T G ++ V F Sbjct: 5 NAINTSASGLTAERFRMDTISKNIANANTTRTPNGSPYKRQVVLFQS 51 >gi|218886418|ref|YP_002435739.1| hypothetical protein DvMF_1322 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757372|gb|ACL08271.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 136 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 188 DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 VTV+ +E SN + EM M+ + F + ++ ++ Sbjct: 82 ADGSVTVETSAIEGSNTDVANEMVSMLTDQRAFEANAAVVRARDEM 127 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M F L+A A ++ A+N++N +T FR V+ + Q+ V Sbjct: 1 MIDGFGTPLSALDAFGTSMAVTANNVANMNTDEFRASDVRLQTGPASQDGQDGQERG-VQ 59 Query: 61 SGKEYLSKEVGSFI 74 + S G Sbjct: 60 VAEIRQSTTEGPLR 73 >gi|327480018|gb|AEA83328.1| flagellar basal body rod protein FlgC [Pseudomonas stutzeri DSM 4166] Length = 147 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F + L++ K+ML+ + + Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTA-KTMLQKVLTLG 146 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI + A RL+T++ N++N +TV +R F+ V DQ + Sbjct: 7 FNIAGSGMSAQSTRLNTISSNIANAETVSSSVDQTYRARHPVFATVFQQANGQPDQSL 64 >gi|269976263|ref|ZP_06183259.1| flagellar basal-body rod protein FlgB [Mobiluncus mulieris 28-1] gi|307699942|ref|ZP_07636993.1| putative flagellar basal-body rod protein FlgB [Mobiluncus mulieris FB024-16] gi|269935592|gb|EEZ92130.1| flagellar basal-body rod protein FlgB [Mobiluncus mulieris 28-1] gi|307614980|gb|EFN94198.1| putative flagellar basal-body rod protein FlgB [Mobiluncus mulieris FB024-16] Length = 115 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 1 MQTSF-NIGL-AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 M S I + A L R +ADN++N T GF KV+F + + + + + Sbjct: 1 MFDSINYIAMRTALDGLSMRQRVIADNIANIQTPGFLAGKVRFEDELARATRFGNPQSAH 60 Query: 59 VASGKE 64 +A+ + Sbjct: 61 IATARS 66 >gi|222053739|ref|YP_002536101.1| flagellar hook-associated protein FlgK [Geobacter sp. FRC-32] gi|221563028|gb|ACM19000.1| flagellar hook-associated protein FlgK [Geobacter sp. FRC-32] Length = 479 Score = 48.9 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 3/82 (3%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 + F+I A Q + ++N++N +T G+ +V I + I + Sbjct: 3 INDIFSIATRGIAAQRQAIEVTSENIANVNTPGYSRQRVIMESGPANIASGFPIGGGVEV 62 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 VA + Y + ++ G Sbjct: 63 VAVQRSYDNLLQTQLVN-GNST 83 >gi|149182501|ref|ZP_01860974.1| flagellar basal-body rod protein C [Bacillus sp. SG-1] gi|148849761|gb|EDL63938.1| flagellar basal-body rod protein C [Bacillus sp. SG-1] Length = 153 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM +I T+ + + T+ + N+ M++++ Sbjct: 108 GYVQMPNVDPLREMIDLISATRSYEANVTVFNANKSMMMKSL 149 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV-G---------FRTIKVKFSEVVGAIKNDID 53 S N +A A R+ ++ NM+N DT G +R V F G + ++ Sbjct: 6 SMNTSASALSAQRLRMDVISSNMANADTTRGKLVDGEWQPYRRKSVVFQPNGGQFSSFLN 65 Query: 54 QKISFVASGK 63 + ++ SG Sbjct: 66 KAMNTKDSGS 75 >gi|126738582|ref|ZP_01754287.1| flagellar basal-body rod protein FlgC [Roseobacter sp. SK209-2-6] gi|126720381|gb|EBA17087.1| flagellar basal-body rod protein FlgC [Roseobacter sp. SK209-2-6] Length = 130 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 S N+ + A +RL V++N+SN DT G+R V F V ++ V +G Sbjct: 6 NSLNVTASGLKAQAKRLRHVSENISNADTPGYRRKTVPFLAV-----RELQNDAEKVETG 60 Query: 63 KEYLSKE 69 + L + Sbjct: 61 RVTLDRT 67 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 15/34 (44%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 G E SN + M E+ + +++ + ++ Sbjct: 84 GHYEGSNVDLMIEIADAREAQRSYDANLKMFEQT 117 >gi|238916744|ref|YP_002930261.1| flagellar basal-body rod protein FlgC [Eubacterium eligens ATCC 27750] gi|238872104|gb|ACR71814.1| flagellar basal-body rod protein FlgC [Eubacterium eligens ATCC 27750] Length = 164 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M T+FN+ + A + R +++N++N DT Sbjct: 1 MFTAFNVSASGMTAQQLRTDVISENIANADTT 32 Score = 42.3 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 N N++ EM +I ++ + + + + ++ + + +I S Sbjct: 123 NVNTVQEMTDLIDASRSYEANISAFNASKSMATKGL-SIGS 162 >gi|256833244|ref|YP_003161971.1| flagellar basal-body rod protein FlgB [Jonesia denitrificans DSM 20603] gi|256686775|gb|ACV09668.1| flagellar basal-body rod protein FlgB [Jonesia denitrificans DSM 20603] Length = 113 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 6 NIGL-AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 + L +A L QR +A+N++N +T F +V+F + + + ++ Sbjct: 7 YVALNSALDGLAQRQRVIANNVANINTPNFHAQRVQFEDELSRQVQRGNGAVTPTVQRSL 66 Query: 65 YLSKEVGS 72 ++ G+ Sbjct: 67 EPTRLDGN 74 >gi|312126816|ref|YP_003991690.1| flagellar basal-body rod protein flgb [Caldicellulosiruptor hydrothermalis 108] gi|311776835|gb|ADQ06321.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor hydrothermalis 108] Length = 132 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +R +++N++N DT G++ + F + N Sbjct: 20 KRNEIISNNIANADTPGYKAKDLNFEAYLQRSLNQ 54 >gi|294635619|ref|ZP_06714095.1| flagellar hook-associated protein FlgK [Edwardsiella tarda ATCC 23685] gi|291091002|gb|EFE23563.1| flagellar hook-associated protein FlgK [Edwardsiella tarda ATCC 23685] Length = 552 Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N ++ A + L+ ++N+++ T G+ V F+E N F+ Sbjct: 1 MANLINNAMSGLNAAQTALAVTSNNINHVYTAGYNRQSVSFAE-----NNGTSTPAGFIG 55 Query: 61 SGKEY 65 +G Sbjct: 56 NGVVV 60 >gi|118444436|ref|YP_877973.1| flagellar basal body rod protein FlgC [Clostridium novyi NT] gi|118134892|gb|ABK61936.1| flagellar basal-body rod protein FlgC [Clostridium novyi NT] Length = 145 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI T+ + + T I+ ++ ++A+ Sbjct: 100 GYVLMPNVNILNEMADMIAATRAYEANVTAINSSKNMFMKAL 141 >gi|226327737|ref|ZP_03803255.1| hypothetical protein PROPEN_01610 [Proteus penneri ATCC 35198] gi|225203441|gb|EEG85795.1| hypothetical protein PROPEN_01610 [Proteus penneri ATCC 35198] Length = 463 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKIS 57 M S N ++ A + +STV++N++N + + F+E G + + I ++ Sbjct: 1 MSNSLINTAMSGLNAAQAAMSTVSNNIANQNVKWYNRQMTVFNENSGTMTGNGYIGNGVN 60 Query: 58 FVASGKEYLSKEVGSFIS 75 +EY G Sbjct: 61 VSRIHREYNEFLAGQMNR 78 >gi|126668564|ref|ZP_01739518.1| flagellar hook-associated protein [Marinobacter sp. ELB17] gi|126626969|gb|EAZ97612.1| flagellar hook-associated protein [Marinobacter sp. ELB17] Length = 668 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M IGL+ L + L+T A+N++N +T G+ V+F + + Sbjct: 1 MAGLLGIGLSGILGSQAALNTTANNITNANTPGYSRQDVQF-----GAQTPQRTGAGSIG 55 Query: 61 SGKEY 65 +G Sbjct: 56 TGVNV 60 >gi|88799018|ref|ZP_01114599.1| Flagellar basal body protein [Reinekea sp. MED297] gi|88778245|gb|EAR09439.1| Flagellar basal body protein [Reinekea sp. MED297] Length = 132 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + S I A L +R S +A+N++N DT GF+ + F ++ + + Q + + Sbjct: 7 ENSLGIHDNALLVRSERSSVLANNLANADTPGFKARDMDFKAILRG-EVEKQQSLEMAET 65 Query: 62 GKEYLSKEV 70 ++ Sbjct: 66 NSRHIPGRQ 74 >gi|304316910|ref|YP_003852055.1| flagellar basal-body rod protein FlgC [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778412|gb|ADL68971.1| flagellar basal-body rod protein FlgC [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 149 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 159 GLYSVDMSQGFVRRENSGISP-NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLT 217 G+ +V V + +P N P + T G++ N N + EM MI T Sbjct: 67 GIQAVGNGVEVVSIVDDNKTPLNRVYDPGNPDADNT---GYVNYPNVNIVSEMVDMISAT 123 Query: 218 QKFNSITTLIDENEKSMLEAI 238 + + + T ++ + + +A+ Sbjct: 124 RAYEANVTAVNSAKSMIEKAL 144 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 14/31 (45%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S +I A R+ ++ N++N DT Sbjct: 4 LNSIDISATGLTAERLRMDVISQNIANVDTT 34 >gi|317406203|gb|EFV86452.1| flagellar basal-body rod protein FlgC [Achromobacter xylosoxidans C54] Length = 139 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 21/45 (46%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ N + + E MI ++ + + +++ + M + + Sbjct: 91 AQGYVSMPNVDPVAETVNMIAASRSYQANVEVLNTAKSLMQKTLT 135 Score = 35.8 bits (82), Expect = 5.9, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 + F+I +A A QR++ A NM+N VG +R +V F Sbjct: 4 LSIFDIAGSALSAQSQRMNVAASNMANADSVVGPDGQPYRARQVVFQ 50 >gi|192361114|ref|YP_001982394.1| flagellar hook-associated protein 1 FlgK [Cellvibrio japonicus Ueda107] gi|190687279|gb|ACE84957.1| flagellar hook-associated protein 1 FlgK [Cellvibrio japonicus Ueda107] Length = 923 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + ++ A + L T N+SN +T G+ +V V FV Sbjct: 1 MSGILSNAISGLQASQNALRTAGHNISNANTTGYTRQQV----VYSTRPEQSAGAAGFVG 56 Query: 61 SGKEYLSKE 69 SG S E Sbjct: 57 SGVTTTSIE 65 >gi|312962293|ref|ZP_07776784.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6] gi|311283220|gb|EFQ61810.1| flagellar basal-body rod protein FlgG [Pseudomonas fluorescens WH6] Length = 38 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 18/37 (48%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 +++ EM MI + + + +I ++ + +N+ Sbjct: 2 STVEEMVNMITTQRAYEMNSKVISTADQMLSFVTQNL 38 >gi|150020229|ref|YP_001305583.1| flagellar hook-associated protein FlgK [Thermosipho melanesiensis BI429] gi|149792750|gb|ABR30198.1| flagellar hook-associated protein FlgK [Thermosipho melanesiensis BI429] Length = 846 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 22/61 (36%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + N GL + ++ V+ N++N +T GF + + Q + G Sbjct: 9 ALNTGLLGIYTSKLAMNVVSHNIANANTPGFSRQVPIIRTMPPIPATTLTQPSVPLQIGT 68 Query: 64 E 64 Sbjct: 69 G 69 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI FN+ ++ ++ + I + Sbjct: 804 VSLDEEMANMIKFQHAFNASARVMTAVDEMIGRVIDKLG 842 >gi|301168116|emb|CBW27702.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 135 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 26/63 (41%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++ + R ++ N++N +T G++ +V F + + + Q+ + + Sbjct: 12 ASSLNFRQMRQEIISSNIANAETPGYKAKRVDFEQALARALDVDGQQQLNTEDSRHFDVG 71 Query: 69 EVG 71 G Sbjct: 72 SGG 74 >gi|291288372|ref|YP_003505188.1| flagellar hook-associated protein FlgK [Denitrovibrio acetiphilus DSM 12809] gi|290885532|gb|ADD69232.1| flagellar hook-associated protein FlgK [Denitrovibrio acetiphilus DSM 12809] Length = 584 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFVASG 62 F+ G++ A + + +N+SN +T G+ +V + + +S Sbjct: 8 FSTGVSGLFASQAGIDVTGNNISNVNTEGYSRQRVVLETANPEKNSQGVFGRGVSVETVE 67 Query: 63 KEYLSKEVGSFISTGTEL 80 + Y S + ++L Sbjct: 68 RIYDDMLASSIRNESSDL 85 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 4/40 (10%), Positives = 18/40 (45%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + EM ++ + F + + I ++ + + + ++ + Sbjct: 542 VSMDEEMTNLMKFQRAFEASSRFITVVDEMLEKLVNSLGT 581 >gi|154175384|ref|YP_001408368.1| flagellar hook-associated protein FlgK [Campylobacter curvus 525.92] gi|112802604|gb|EAT99948.1| flagellar hook-associated protein FlgK [Campylobacter curvus 525.92] Length = 623 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S N G++ A + ++ST +N++N D+ + +V V + ++ V +G Sbjct: 7 SLNTGVSGLNAAQTQISTTGNNIANADSAYYTRQRV-----VQSASPAMNTVPGGVGTGT 61 Query: 64 EY 65 + Sbjct: 62 QV 63 >gi|291520177|emb|CBK75398.1| flagellar hook-associated protein FlgK [Butyrivibrio fibrisolvens 16/4] Length = 494 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 I + + +++T A+N+SN +T G+ V V + Q +G Sbjct: 7 GLTIAASGLNTAQAQINTTANNISNVNTTGYSKQVVN---TVASSALRCYQSWGTTGTGV 63 Query: 64 EYLSKEV 70 E S Sbjct: 64 EAKSVTQ 70 >gi|167750732|ref|ZP_02422859.1| hypothetical protein EUBSIR_01710 [Eubacterium siraeum DSM 15702] gi|167656411|gb|EDS00541.1| hypothetical protein EUBSIR_01710 [Eubacterium siraeum DSM 15702] gi|291532066|emb|CBK97651.1| flagellar basal-body rod protein FlgC [Eubacterium siraeum 70/3] Length = 160 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 +S NI + A RL ++ N++N T G +R V FSE Sbjct: 4 LSSLNIAASGMAAERLRLDVISQNVANAKTTRTEDGTPYRRQVVLFSE 51 >gi|302670715|ref|YP_003830675.1| flagellar basal-body rod protein FlgB [Butyrivibrio proteoclasticus B316] gi|302395188|gb|ADL34093.1| flagellar basal-body rod protein FlgB [Butyrivibrio proteoclasticus B316] Length = 131 Score = 48.5 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 A A R +A+N++N DT G++ + F + Sbjct: 16 AADASWLRNEVIANNIANVDTPGYKRQDLNFED 48 >gi|311105933|ref|YP_003978786.1| flagellar basal-body rod protein FlgC [Achromobacter xylosoxidans A8] gi|310760622|gb|ADP16071.1| flagellar basal-body rod protein FlgC [Achromobacter xylosoxidans A8] Length = 139 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 12/91 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 G+ I + + V Q +++ P PL D +G++ N + + Sbjct: 57 QALGQEIGGVRVAGVIEDQSPLKQVYD------PQHPLAD------AQGYVSMPNVDPVA 104 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E MI ++ + + +++ + M + + Sbjct: 105 ETVNMIAASRSYQANVEVLNTAKALMQKTLT 135 Score = 37.7 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 + F+I +A A QR++ A NM+N VG +R +V F V + Q+ Sbjct: 4 LSIFDIAGSALSAQSQRMNVAASNMANADSVVGPDGKPYRARQVVFQ-VNPPAGQALGQE 62 Query: 56 ISFVASGKEYLSKEV 70 I V + Sbjct: 63 IGGVRVAGVIEDQSP 77 >gi|23092313|gb|AAN08638.1| FlgC [Aeromonas hydrophila] Length = 139 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 +G V E + P P+ D GF+ N N + EM M + ++ + + + Sbjct: 69 KGIVESEAPLLKEYNPGHPMADKD------GFIFKPNVNMVEEMADMTNASRSYQTNVQV 122 Query: 227 IDENEKSMLEAIR 239 D +K + + ++ Sbjct: 123 ADSAKKMLQQTLQ 135 Score = 36.9 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT--------DTVGFRTIKVKFSEVVGAIKNDIDQKI 56 F+I +A A RL+TVA NM+N +T + + F+ + +D + Sbjct: 7 FDIAGSAMSAQSVRLNTVASNMANADSVSSSVENT--YHARRPIFAAQLDQAMSDKQASV 64 Query: 57 SFVASG 62 G Sbjct: 65 GVEVKG 70 >gi|42524765|ref|NP_970145.1| flagellar basal-body rod protein [Bdellovibrio bacteriovorus HD100] gi|39576975|emb|CAE78204.1| flagellar basal-body rod protein [Bdellovibrio bacteriovorus HD100] Length = 147 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N M EM MI ++ + + T + ++ L A+ Sbjct: 108 NINLMEEMTNMIQASRSYEANVTAVQASKDMALSAL 143 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGA 47 T I + A R++T+A N++N +T G +R V F + A Sbjct: 5 LTGMRISSSGMAAQRMRMNTIASNIANINTTQTPEGGPYRRKDVVFEAMPDA 56 >gi|255023253|ref|ZP_05295239.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J1-208] Length = 243 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 11/89 (12%) Query: 144 EKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISP------NIPPTPLEDLSGVTVKRG 197 G + +A + + + G V+ N P + ++ +G + Sbjct: 154 SDGTVI----PVAQLAVATFSNEDGLVKMGNGEYVPGLSSGDAVYGVAGQNGAG-GISGS 208 Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTL 226 LE SN + E ++ F L Sbjct: 209 SLEGSNVDLSREFVNLMTYQSGFQGTQKL 237 >gi|71906389|ref|YP_283976.1| flagellar basal-body rod protein FlgC [Dechloromonas aromatica RCB] gi|71846010|gb|AAZ45506.1| Flagellar basal-body rod protein FlgC [Dechloromonas aromatica RCB] Length = 137 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 18/36 (50%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI ++ + + +++ + +L + Sbjct: 97 NVNVVEEMTNMISASRSYQTNVEVMNTAKTMLLRTL 132 Score = 40.0 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 F + +A A RL+T A N++N D+V G +R +V F D + + Sbjct: 5 NVFQVSSSAMTAQSMRLNTTASNLANADSVISADGKPYRAKQVVFEATPMGNAGDSSKGV 64 Query: 57 SF 58 Sbjct: 65 RV 66 >gi|160903121|ref|YP_001568702.1| flagellar basal-body rod protein FlgC [Petrotoga mobilis SJ95] gi|160360765|gb|ABX32379.1| flagellar basal-body rod protein FlgC [Petrotoga mobilis SJ95] Length = 140 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 1 MQTSFN----IGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKN 50 M I + A RL ++ N++N+DT G +R V F E + N Sbjct: 1 MMDGLFKVLDIAASGMTAERFRLDVISQNLANSDTTRTEEGGPYRRKAVIFQEALSESTN 60 Query: 51 D 51 Sbjct: 61 G 61 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 15/36 (41%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM M+ + + +++ + A+ Sbjct: 101 NVNVLREMVDMMSAQRAYEMNAAVVNSAKSMYNSAL 136 >gi|188997545|ref|YP_001931796.1| flagellar basal-body rod protein FlgC [Sulfurihydrogenibium sp. YO3AOP1] gi|188932612|gb|ACD67242.1| flagellar basal-body rod protein FlgC [Sulfurihydrogenibium sp. YO3AOP1] Length = 136 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM M+ + + + T + ++ +++++ Sbjct: 90 GYVRLPNVDPIREMVDMMTAMRTYEANLTAFNTHKDMLIKSL 131 Score = 39.6 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKN 50 I ++ A R+ A N++N ++ G +R F V+ A Sbjct: 4 KGLEISVSGMQAERVRIDLAASNLANVNSTHTENGQPYRRKVPVFEAVLDAQSQ 57 >gi|187478183|ref|YP_786207.1| flagellar basal body rod protein FlgC [Bordetella avium 197N] gi|115422769|emb|CAJ49297.1| flagellar basal-body rod protein [Bordetella avium 197N] Length = 139 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 34/91 (37%), Gaps = 12/91 (13%) Query: 149 SQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMY 208 G+ I + + +V ++ P P+ D +G++ N + + Sbjct: 57 QAAGQEIGGVKVAAVVEDASPLK------MVFDPKNPMAD------AQGYVAMPNVDPVA 104 Query: 209 EMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E MI ++ + + +++ ++ M + Sbjct: 105 ETVNMIAASRSYQANIEVLNTAKQLMQRTLT 135 Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 + F I +A A QRL+ A N++N D+V +R +V F + A+ Q+ Sbjct: 4 LSIFEISGSALAAQSQRLNVAASNLANADSVAGPDGQPYRARQVVFQ-MNPALGQAAGQE 62 Query: 56 ISFVASGKEYLSKEV 70 I V Sbjct: 63 IGGVKVAAVVEDASP 77 >gi|295678060|ref|YP_003606584.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1002] gi|295437903|gb|ADG17073.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1002] Length = 141 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P P D + G++ N + + EM MI ++ + + ++ + ML+ + Sbjct: 86 DPGNPAADAN------GYVTLPNVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLT 138 Score = 42.3 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F + +A A +RL+ A N++N T G ++ +V F+ Sbjct: 5 MNIFGVAGSAMSAQSERLNVTASNLANADSTTGPDGQPYKAKQVIFA 51 >gi|126730138|ref|ZP_01745950.1| flagellar basal-body rod protein FlgC [Sagittula stellata E-37] gi|126709518|gb|EBA08572.1| flagellar basal-body rod protein FlgC [Sagittula stellata E-37] Length = 129 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Query: 2 QTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFS 42 ++F+ L+ + RL V++N++N DT G+R ++ F+ Sbjct: 1 MSAFSDALSVTSGGLTSQAARLRVVSENIANVDTPGYRRKQLNFA 45 Score = 38.9 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P PL D +G + SN + M E+ + + + + D+ + M A+ + Sbjct: 73 DPSHPLADETGKYL------GSNVDLMIELADAREAQRSYEANLKMFDQT-RQMSSALLD 125 Query: 241 I 241 + Sbjct: 126 L 126 >gi|90415321|ref|ZP_01223255.1| flagellar basal-body rod protein FlgB [marine gamma proteobacterium HTCC2207] gi|90332644|gb|EAS47814.1| flagellar basal-body rod protein FlgB [marine gamma proteobacterium HTCC2207] Length = 128 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 9/83 (10%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A +R+ ++ N++N DT GF+ + F V+ ++ + + A + S Sbjct: 15 ALDLRAKRMEVLSQNIANADTPGFKARDIDFKNVLNNVQQAGSIRTTHAAHVSQASSAGA 74 Query: 71 GSFIST--------GTELDFALE 85 + T G +D ++E Sbjct: 75 -DMVYTVPFGTSVDGNTVDISVE 96 >gi|323492332|ref|ZP_08097485.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG 20546] gi|323313379|gb|EGA66490.1| flagellar hook-associated protein FlgK [Vibrio brasiliensis LMG 20546] Length = 457 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 1/75 (1%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N+SN +T G+ + + VGA K D V Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVSNINTPGYSRQQAMMTS-VGAGKYDKLSAGMGVEV 59 Query: 62 GKEYLSKEVGSFIST 76 + T Sbjct: 60 ASIRRVTDQFLIQQT 74 >gi|167567748|ref|ZP_02360664.1| flagellar basal-body rod protein FlgC [Burkholderia oklahomensis EO147] gi|167574699|ref|ZP_02367573.1| flagellar basal-body rod protein FlgC [Burkholderia oklahomensis C6786] Length = 138 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 17/106 (16%) Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 P IF VG GE+ G + + + V + P PL D G Sbjct: 47 PVFASIFKVGADGEV--NGAAVQVLDVVQSTEPLRKVHQ---------PGNPLADADGNV 95 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + N + + EM M+ T+ +++ ++ +E ++ Sbjct: 96 LYP------NVDPVEEMTDMLSSTRAYSTNVEVLGRVNGMQMELLK 135 Score = 37.3 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 10/83 (12%) Query: 6 NIGLAAQLALEQRLSTVADNMSN--------TDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 I +A A RL+T+A N++N T +R K F+ + + + Sbjct: 8 QIAGSAMAAQTVRLNTIASNLANADAASSTEAST--YRARKPVFASIFKVGADGEVNGAA 65 Query: 58 FVASGKEYLSKEVGSFISTGTEL 80 ++ + G L Sbjct: 66 VQVLDVVQSTEPLRKVHQPGNPL 88 >gi|317051987|ref|YP_004113103.1| flagellar basal body rod protein [Desulfurispirillum indicum S5] gi|316947071|gb|ADU66547.1| flagellar basal body rod protein [Desulfurispirillum indicum S5] Length = 129 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M +F +A R S A N++N +T GF++ +V +E V I Sbjct: 1 MVDAFYNAASAIKTYGFRQSASAHNVANVNTDGFKSQRVDTAEGVSGGVRPTGVSI 56 >gi|225849147|ref|YP_002729311.1| flagellar basal-body rod protein FlgC [Sulfurihydrogenibium azorense Az-Fu1] gi|225643183|gb|ACN98233.1| flagellar basal-body rod protein FlgC [Sulfurihydrogenibium azorense Az-Fu1] Length = 137 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM M+ + + + T + ++ +L+++ Sbjct: 91 GYVRLPNVDPIREMVDMMSAMRSYEANLTAFNTHKDMILKSL 132 Score = 38.5 bits (89), Expect = 0.87, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 6/57 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDID 53 + ++ A R+ A N++N ++ G +R F V+ + + Sbjct: 4 KGLEVSVSGMQAERVRIDLSASNLANVNSTRAEDGQPYRRKVPVFEAVLDSQSKNTP 60 >gi|163789653|ref|ZP_02184091.1| flagellar basal-body rod protein FlgB [Carnobacterium sp. AT7] gi|159875185|gb|EDP69251.1| flagellar basal-body rod protein FlgB [Carnobacterium sp. AT7] Length = 125 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIK--------NDI 52 M ++N+ A A R ++ N++N +T G++ KV+F ++ + +D+ Sbjct: 1 MDPTYNLMKNALDAASMRQEMISSNIANVNTDGYKVNKVEFESILDNVSKGTTMNKTSDL 60 Query: 53 DQKISFVASGKEYLSKEVG-SFISTGTELDFALE 85 + +SK S G +D +E Sbjct: 61 HIGFENLNEVTPVVSKRTNTSVKENGNNVDIDIE 94 >gi|134095099|ref|YP_001100174.1| basal-body rod protein [Herminiimonas arsenicoxydans] gi|133739002|emb|CAL62050.1| Flagellar basal-body rod protein FlgC (Putative proximal rod protein) [Herminiimonas arsenicoxydans] Length = 134 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + N N + EM MI ++ + + ++ + +L+ + Sbjct: 89 GHVAMPNVNVVEEMVNMISASRSYQTNVETMNAAKTMLLKTLT 131 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A QRL+ V+ N++N T +R +V+F V A K+ Sbjct: 5 NIFNVAGSAMSAQSQRLNVVSSNIANAESTTSADGKTYRAKQVEFQSVPMAGATSTGVKV 64 Query: 57 SFV 59 V Sbjct: 65 RQV 67 >gi|52082076|ref|YP_080867.1| flagellar hook-associated protein FlgK [Bacillus licheniformis ATCC 14580] gi|52787465|ref|YP_093294.1| flagellar hook-associated protein FlgK [Bacillus licheniformis ATCC 14580] gi|319647943|ref|ZP_08002161.1| FlgK protein [Bacillus sp. BT1B_CT2] gi|52005287|gb|AAU25229.1| flagellar hook-associated protein 1 [Bacillus licheniformis ATCC 14580] gi|52349967|gb|AAU42601.1| FlgK [Bacillus licheniformis ATCC 14580] gi|317390284|gb|EFV71093.1| FlgK protein [Bacillus sp. BT1B_CT2] Length = 507 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 I A + LS A+N+SN +T G+ +V F + + S +G+ Sbjct: 8 GLEIAKRGLSAQQSALSVTANNISNANTEGYSRQRVTFK---ASTPYPSVSRDSVGLAGQ 64 Query: 64 EYLSKEVGSFIS 75 E+GS Sbjct: 65 MGTGVEIGSVER 76 Score = 39.6 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 17/41 (41%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM MI +N+ +I ++ + + I + Sbjct: 463 SAVSLDEEMSNMIQFQHAYNAAARMITLQDEVLDKIINGMG 503 >gi|302392399|ref|YP_003828219.1| flagellar basal-body rod protein FlgB [Acetohalobium arabaticum DSM 5501] gi|302204476|gb|ADL13154.1| flagellar basal-body rod protein FlgB [Acetohalobium arabaticum DSM 5501] Length = 135 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 S ++ A L+QR +++N++N DT ++ V F + N+ ++ Sbjct: 7 NQSISVLTKALDGLQQRQEAISNNIANVDTPDYKRKDVNFKSELKTALNNDSTGLTAT 64 >gi|332981428|ref|YP_004462869.1| flagellar basal-body rod protein FlgB [Mahella australiensis 50-1 BON] gi|332699106|gb|AEE96047.1| flagellar basal-body rod protein FlgB [Mahella australiensis 50-1 BON] Length = 137 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 23/41 (56%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 A L R ++DN++N DT GF+ KV F +V+ +D Sbjct: 17 ALDGLWMRNQVISDNVANVDTPGFKASKVAFEDVLKGALDD 57 >gi|310816827|ref|YP_003964791.1| flagellar basal-body rod protein FlgC [Ketogulonicigenium vulgare Y25] gi|308755562|gb|ADO43491.1| flagellar basal-body rod protein FlgC [Ketogulonicigenium vulgare Y25] Length = 127 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 15/93 (16%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 T+ +I + A R+ ++N++N DT G+ V F A ND + S V Sbjct: 6 TTLSIAASGMQAQASRMRFTSENIANADTPGYHRKLVSFR---AAHANDGTVEASRVRLD 62 Query: 63 KE----------YLSKEVGSFISTGTELDFALE 85 + L+ + G++ G+ +D +E Sbjct: 63 RAPLAEIYDPAHPLANDQGNYS--GSNVDLLIE 93 >gi|78358192|ref|YP_389641.1| flagellar hook-associated protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220597|gb|ABB39946.1| Flagellar hook-associated protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 696 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 21/41 (51%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS 42 + ++G A A + + T +N++N +T G+ V+F Sbjct: 4 NSLLSVGKDALFASQSAIQTTGNNIANVNTPGYSRQAVRFE 44 >gi|291280513|ref|YP_003497348.1| flagellar hook-associated protein 1 FlgK [Deferribacter desulfuricans SSM1] gi|290755215|dbj|BAI81592.1| flagellar hook-associated protein 1 FlgK [Deferribacter desulfuricans SSM1] Length = 584 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 17/36 (47%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 F G++ + + + N++N +T G+ ++ Sbjct: 8 FQTGVSGLMVSQAGIDVTGHNIANVNTEGYSRQRLS 43 Score = 40.0 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 4/40 (10%), Positives = 13/40 (32%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 + E +I + + + I ++ + I + Sbjct: 542 VSLDEEFTNLIKFQKAYEANARFITAVDEMLDRLINGTGT 581 >gi|152980444|ref|YP_001353109.1| FlgC flagellar basal body rod protein [Janthinobacterium sp. Marseille] gi|151280521|gb|ABR88931.1| FlgC flagellar basal body rod protein [Janthinobacterium sp. Marseille] Length = 135 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G + N N + EM MI ++ + + ++ + +L+ + Sbjct: 90 GHVAMPNVNVVEEMVNMISASRSYQTNVETMNTAKTMLLKTLT 132 Score = 41.2 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 FN+ +A A QRL+ V+ N++N T +R +V+F Sbjct: 5 NIFNVSGSAMSAQSQRLNVVSSNIANAESTTSADGKTYRAKQVEFQ 50 >gi|23016696|ref|ZP_00056449.1| COG1256: Flagellar hook-associated protein [Magnetospirillum magnetotacticum MS-1] Length = 858 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 N ++ L ++ L ++ N+ N +T G+ ++ V A Q+ + + Sbjct: 6 GLNTAVSGLLTNQKGLDVISQNVVNVNTKGYVRKQMTPESRVVAGVGAGVQQGALTRNVD 65 Query: 64 EYLSKEVGSFISTGTELDF 82 E L +++ ST LD Sbjct: 66 EGLMRDIRRQTSTQGALDV 84 Score = 35.8 bits (82), Expect = 5.6, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 17/39 (43%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S N E+ MI+ Q +++ +I ++ + + Sbjct: 817 TSGVNLDEEVANMINFQQAYSASAKVISTLQEMLDVLVN 855 >gi|315657526|ref|ZP_07910408.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491998|gb|EFU81607.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 688 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S N GL A ++ + N++N +T G+ +V+ + + + G Sbjct: 6 SSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQGGG 65 Query: 63 KEYL 66 E Sbjct: 66 VEIT 69 >gi|266621920|ref|ZP_06114855.1| flagellar basal-body rod protein FlgC [Clostridium hathewayi DSM 13479] gi|288866393|gb|EFC98691.1| flagellar basal-body rod protein FlgC [Clostridium hathewayi DSM 13479] Length = 144 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N NS EM ++ T+ + + T ++ + L+A+ Sbjct: 99 GYVMMPNVNSAEEMVDLMAATRAYEANVTALNIAKSMALKAL 140 >gi|291558197|emb|CBL35314.1| flagellar basal-body rod protein FlgC [Eubacterium siraeum V10Sc8a] Length = 160 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 +S NI + A RL ++ N++N T G +R V FSE Sbjct: 4 LSSLNIAASGMAAERLRLDVISQNVANAKTTRTEDGTPYRRQVVLFSE 51 >gi|256376476|ref|YP_003100136.1| flagellar basal-body rod protein FlgB [Actinosynnema mirum DSM 43827] gi|255920779|gb|ACU36290.1| flagellar basal-body rod protein FlgB [Actinosynnema mirum DSM 43827] Length = 118 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 AA L R A+N++N T GF KV F E +G + + V + +S Sbjct: 12 AALTGLAMRQRVSANNIANVQTPGFIASKVNFEESLGEAVRS-GEGSTAVRGTRPVISDS 70 Query: 70 VGSFISTGTE 79 V + G Sbjct: 71 VNAARQDGNN 80 >gi|163750564|ref|ZP_02157802.1| hypothetical flagellar hook-associated protein [Shewanella benthica KT99] gi|161329719|gb|EDQ00708.1| hypothetical flagellar hook-associated protein [Shewanella benthica KT99] Length = 637 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 NI LA + +L+ ++N++N +T G+ + S + D Sbjct: 3 MDLLNIARTGVLASQAQLAVTSNNIANVNTQGYHRQVAEQSSLESQRLGD 52 >gi|253573516|ref|ZP_04850859.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. oral taxon 786 str. D14] gi|251847044|gb|EES75049.1| flagellar basal-body rod protein FlgC [Paenibacillus sp. oral taxon 786 str. D14] Length = 149 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N + + EM MI T+ + + T ++ ++ +A++ Sbjct: 104 GYVYMPNVDILKEMVDMISATRSYEANVTALNASKAMFTKALQ 146 Score = 42.7 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 + SF I +A A R+ ++ N++N +T Sbjct: 3 ISDSFGISSSALTAQRLRMDVISSNIANAETT 34 >gi|258511368|ref|YP_003184802.1| flagellar basal-body rod protein FlgB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478094|gb|ACV58413.1| flagellar basal-body rod protein FlgB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 134 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ 54 +A A R + A+N++N T G++ V F ++ + D Sbjct: 9 SALDASTLRQAVYANNIANAGTPGYKRQDVAFETLLQSALGSGDS 53 >gi|298345981|ref|YP_003718668.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC 43063] gi|298236042|gb|ADI67174.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC 43063] Length = 687 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S N GL A ++ + N++N +T G+ +V+ + + + G Sbjct: 6 SSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQGGG 65 Query: 63 KEYL 66 E Sbjct: 66 VEIT 69 >gi|218288291|ref|ZP_03492590.1| flagellar basal-body rod protein FlgB [Alicyclobacillus acidocaldarius LAA1] gi|218241650|gb|EED08823.1| flagellar basal-body rod protein FlgB [Alicyclobacillus acidocaldarius LAA1] Length = 134 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ 54 +A A R + A+N++N T G++ V F ++ + D Sbjct: 9 SALDASTLRQAVYANNIANAGTPGYKRQDVAFETLLQSALGSGDS 53 >gi|304390261|ref|ZP_07372215.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326743|gb|EFL93987.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 687 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S N GL A ++ + N++N +T G+ +V+ + + + G Sbjct: 6 SSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQGGG 65 Query: 63 KEYL 66 E Sbjct: 66 VEIT 69 >gi|270487671|ref|ZP_06204745.1| conserved domain protein [Yersinia pestis KIM D27] gi|270336175|gb|EFA46952.1| conserved domain protein [Yersinia pestis KIM D27] Length = 50 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 198 FLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 LE SN +++ EM I L+++F + ++ E Sbjct: 4 HLESSNVSAISEMIASISLSRQFEAQIKMMKVAEDLAQ 41 >gi|221069316|ref|ZP_03545421.1| flagellar hook-associated protein FlgK [Comamonas testosteroni KF-1] gi|220714339|gb|EED69707.1| flagellar hook-associated protein FlgK [Comamonas testosteroni KF-1] Length = 648 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 + N+G A +A + L T N++N +T G+ V F G + Sbjct: 1 MSLLNVGARALMANQIALQTTGHNIANVNTAGYSRQSVAFQTSAGQNIGN 50 >gi|91776307|ref|YP_546063.1| flagellar basal-body rod protein FlgC [Methylobacillus flagellatus KT] gi|91710294|gb|ABE50222.1| flagellar basal-body rod protein FlgC [Methylobacillus flagellatus KT] Length = 135 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N EM MI ++ + + ++ + +L+ + Sbjct: 90 GYVAMPNVNVTEEMVNMISASRSYQNNVETMNAAKSMLLKTLT 132 Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG--FRTIKVKFSEVVGAIKNDID 53 FNI +A A QRL+ VA N++N + G +RT + FS V K D Sbjct: 5 NVFNISGSAMSAQGQRLNVVASNLANADSVTSSNGQPYRTKHIVFSAVPVNAKGDAQ 61 >gi|322832570|ref|YP_004212597.1| flagellar hook-associated protein FlgK [Rahnella sp. Y9602] gi|321167771|gb|ADW73470.1| flagellar hook-associated protein FlgK [Rahnella sp. Y9602] Length = 550 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M +S N ++ A + LST +N++N G+ + N I ++ Sbjct: 1 MSSSLINTAMSGLNAAQAALSTTGNNIANVSVAGYNRQTA-----IITQSNGISTPAGYI 55 Query: 60 ASGKEYL 66 +G Sbjct: 56 GNGVTVT 62 >gi|299531280|ref|ZP_07044690.1| flagellar hook-associated protein FlgK [Comamonas testosteroni S44] gi|298720687|gb|EFI61634.1| flagellar hook-associated protein FlgK [Comamonas testosteroni S44] Length = 648 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 + N+G A +A + L T N++N +T G+ V F G + Sbjct: 1 MSLLNVGARALMANQIALQTTGHNIANVNTAGYSRQSVAFQTSAGQNIGN 50 >gi|294339836|emb|CAZ88199.1| putative flagellar hook-associated protein FlgK [Thiomonas sp. 3As] Length = 667 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 2/74 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFVASG 62 N L A + L +N++N +T G+ S + ++ + A Sbjct: 8 LNNALTGLQAAQSALQVTGNNIANVNTPGYSRETAVQSTLTPSLYGGQYLGNGTQIDAVT 67 Query: 63 KEYLSKEVGSFIST 76 + Y S ST Sbjct: 68 RSYNSYLQSQVWST 81 >gi|89100618|ref|ZP_01173476.1| flagellar hook-associated protein K [Bacillus sp. NRRL B-14911] gi|89084642|gb|EAR63785.1| flagellar hook-associated protein K [Bacillus sp. NRRL B-14911] Length = 527 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 3/65 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 + L N++N +T GF ++ F + +++ G E Sbjct: 9 GMFTQQSALYVTGHNIANANTPGFSRQRINFEQTSPYPAASMNRPQVPGQMGTGV---EA 65 Query: 71 GSFIS 75 GS Sbjct: 66 GSVQR 70 Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM MI +N+ I ++ + + I + Sbjct: 483 SAVSLDEEMTNMIKFQHAYNAAARNITVVDEMLDKIINGMG 523 >gi|295696111|ref|YP_003589349.1| flagellar basal-body rod protein FlgC [Bacillus tusciae DSM 2912] gi|295411713|gb|ADG06205.1| flagellar basal-body rod protein FlgC [Bacillus tusciae DSM 2912] Length = 155 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + EM +I ++ + + T +D + ++A+ Sbjct: 109 GYVQLPNVDVATEMVDLISASRAYEANVTALDAGKMMAVKAL 150 Score = 41.2 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 Q +F I + A R+ +A N++N DT Sbjct: 4 QDTFAISGSGLSAQRLRMDVIAGNIANADTT 34 >gi|238924172|ref|YP_002937688.1| flagellar basal body rod protein [Eubacterium rectale ATCC 33656] gi|238875847|gb|ACR75554.1| flagellar basal body rod protein [Eubacterium rectale ATCC 33656] gi|291524901|emb|CBK90488.1| flagellar basal-body rod protein FlgC [Eubacterium rectale DSM 17629] Length = 146 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 +FNI + A R +A N++N +T +R V FSE + I Sbjct: 5 QAFNISASGMTAERFRTDIIAQNIANVNTTSTKEGTPYRRKIVTFSEKNVTPFSQIYSSS 64 Query: 57 SFVASGKEYLSKEVGSFISTG 77 A G V S ST Sbjct: 65 KKAAVGNGVKVSSVTSDYSTD 85 Score = 45.0 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N++ EM +I T+ + + T + ++ ++ Sbjct: 107 NVNTVTEMTNLIDATRAYEANATAFEASKSMAQNGLQ 143 >gi|157692298|ref|YP_001486760.1| flagellar basal body rod protein FlgC [Bacillus pumilus SAFR-032] gi|157681056|gb|ABV62200.1| flagellar basal body rod protein [Bacillus pumilus SAFR-032] Length = 150 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM +I ++ + + T ++ N+ +++A+ Sbjct: 105 GYVQTPNVDPLKEMVDLISSSRSYEANVTALNANKSMLMKAL 146 Score = 40.0 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 21/111 (18%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKV-------KFSEVV 45 + N +A A R+ V+ N++N DT G +R V FS ++ Sbjct: 5 SGVNASASALTAQRLRMDVVSSNLANMDTTRAKQVDGNWEPYRRKLVTLQPSGESFSSIL 64 Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + N + + V + K + + T D + + +++P Sbjct: 65 NSSMNSSGKLGNGVKATKITEDETPFNLQYDPTNPDA--NENGY--VQTPN 111 >gi|315654567|ref|ZP_07907473.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC 51333] gi|315491031|gb|EFU80650.1| flagellar hook-associated protein FlgK [Mobiluncus curtisii ATCC 51333] Length = 681 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S N GL A ++ + N++N +T G+ +V+ + + + G Sbjct: 6 SSLNAGLTGLYAAQRLIEVSGQNINNMNTPGYTRQRVEQRALGIGSEPSVFAGSVPQGGG 65 Query: 63 KEYL 66 E Sbjct: 66 VEIT 69 >gi|302872574|ref|YP_003841210.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor obsidiansis OB47] gi|302575433|gb|ADL43224.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor obsidiansis OB47] Length = 133 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +R +++N++N DT G++ + F + N Sbjct: 20 KRNEIISNNIANADTPGYKAKDLNFEAFLQRSFNQ 54 >gi|134300249|ref|YP_001113745.1| flagellar basal-body rod protein FlgC [Desulfotomaculum reducens MI-1] gi|134052949|gb|ABO50920.1| flagellar basal-body rod protein FlgC [Desulfotomaculum reducens MI-1] Length = 145 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 9/77 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG---------FRTIKVKFSEVVGAIKNDID 53 SF I + + RL +++N++N +T +R F+E + + Sbjct: 5 DSFGISASGMTSERLRLDLISNNIANMNTPSRPNDPNSPVYRRRVPIFAEQLRQTISTKG 64 Query: 54 QKISFVASGKEYLSKEV 70 + + ++++ Sbjct: 65 VEPKGAGVRVKAITEDP 81 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 19/36 (52%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI ++ + + T ++ + L+A+ Sbjct: 105 NINIVNEMVDMITASRTYEANVTALNAAKSMALKAL 140 >gi|310641541|ref|YP_003946299.1| flagellar basal-body rod protein flgc [Paenibacillus polymyxa SC2] gi|309246491|gb|ADO56058.1| Flagellar basal-body rod protein FlgC [Paenibacillus polymyxa SC2] Length = 150 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + M EM MI T+ + + T ++ ++ + +A+ Sbjct: 105 GYVYMPNVDIMKEMVDMISATRSYEANVTALNASKAMVSKAL 146 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 17/87 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKVK-------FSE 43 + F+I +A A R+ ++ N++N +T G +R V F++ Sbjct: 3 INNGFDISASALTAQRLRMDVISSNIANAETTRAKVENGQAIPYRRKTVVLEPNQSGFAD 62 Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEV 70 V+ A + V + + Sbjct: 63 VLKAQMEGSSTSAAGVKVSQIQEDQSP 89 >gi|308050018|ref|YP_003913584.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM 9799] gi|307632208|gb|ADN76510.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM 9799] Length = 457 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 GL+ A + L+T ++N++N T G+ ++ +V A S V Sbjct: 1 MNMLGNGLSGLHAAQMHLATTSNNIANATTPGYSRQQL----LVSARPGGFMGAGSGVQV 56 >gi|224825162|ref|ZP_03698268.1| flagellar basal-body rod protein FlgC [Lutiella nitroferrum 2002] gi|224602833|gb|EEG09010.1| flagellar basal-body rod protein FlgC [Lutiella nitroferrum 2002] Length = 136 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKR-GFLED 201 G+ Q V+ T S Q R S + PP D + G++ Sbjct: 36 SSTGQPYQGRHVVFTAIPVSATQPQVAGVRVTSVVEDTTPPRLKYDPGNPLADQRGYVNL 95 Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI + + + L++ + + + ++ Sbjct: 96 PNVNPVEEMADMISAARSYQTNVELMNTAKNLLQKTLQ 133 >gi|308068650|ref|YP_003870255.1| flagellar basal-body rod protein flgC [Paenibacillus polymyxa E681] gi|305857929|gb|ADM69717.1| Flagellar basal-body rod protein flgC [Paenibacillus polymyxa E681] Length = 150 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + M EM MI T+ + + T ++ ++ + +A+ Sbjct: 105 GYVYMPNVDIMKEMVDMISATRSYEANVTALNASKAMVSKAL 146 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 17/87 (19%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKVK-------FSE 43 + F+I +A A R+ ++ N++N +T G +R V F++ Sbjct: 3 INNGFDISASALTAQRLRMDVISSNIANAETTRAKVENGQAVPYRRKTVVLEPNQSGFAD 62 Query: 44 VVGAIKNDIDQKISFVASGKEYLSKEV 70 V+ A + V + + Sbjct: 63 VLKAQMEGSSTSAAGVKVSQIQEDQSP 89 >gi|260222474|emb|CBA32074.1| hypothetical protein Csp_D30300 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 656 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + NIG A A + L T +N++N +T G+ V V G + + + Sbjct: 1 MSILNIGTRALQANQIALQTAGNNIANVNTPGYSRQNVVLKAVEGQFSGGGYVGKGVEVQ 60 Query: 60 ASGKEYLSK 68 + + + Sbjct: 61 TIQRSFSAF 69 >gi|15895480|ref|NP_348829.1| flagellar hook-associated protein FlgK [Clostridium acetobutylicum ATCC 824] gi|15025209|gb|AAK80169.1|AE007721_9 Flagellar hook-associated protein FlgK [Clostridium acetobutylicum ATCC 824] gi|325509627|gb|ADZ21263.1| Flagellar hook-associated protein FlgK [Clostridium acetobutylicum EA 2018] Length = 634 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 14/107 (13%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NIG++ +Q + N+SN T G+ +V ++ + S G Sbjct: 8 LNIGVSGLTVNQQAIDVTGHNISNASTDGYSRQRV---DIQTRSPYGMPSLNSAAGPGLF 64 Query: 65 YLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDD 111 EV S D++ + TR+G FK T++ Sbjct: 65 GTGAEVYSVQR---------VRDSFLDYQIRDLT--TRNGTFKTTNN 100 Score = 38.5 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 17/41 (41%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + EM +I + + + +I ++ + + N+ Sbjct: 592 TSGVSLDEEMTNLIQYSHGYQASAKIISTVDQLLDVVVNNL 632 >gi|327480017|gb|AEA83327.1| flagellar basal body rod protein FlgB [Pseudomonas stutzeri DSM 4166] Length = 134 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + FS V+ Sbjct: 1 MSISFDKALGIHEKALGFRSQRAEVLANNIANADTPNYKARDLDFSSVLAEQSARSQGGF 60 Query: 57 SFVASGKEYLSKE 69 + + +++ E Sbjct: 61 GVARTSERHIAAE 73 >gi|262276419|ref|ZP_06054228.1| flagellar basal-body rod protein FlgC [Grimontia hollisae CIP 101886] gi|262220227|gb|EEY71543.1| flagellar basal-body rod protein FlgC [Grimontia hollisae CIP 101886] Length = 136 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 23/43 (53%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N M EM MI ++ + + + + +++ ++ ++ Sbjct: 91 GYIYKPNVNVMEEMANMISASRSYQTNVEVAEASKQMLMRTLQ 133 Score = 37.3 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A RL+T + N++N ++V ++ F+ + + + Sbjct: 5 NVFNVTGSAMSAESVRLNTTSSNLANANSVSSSAAETYKARHPVFAAELNRFQQGASVPV 64 Query: 57 SFVA 60 Sbjct: 65 QVKG 68 >gi|293605001|ref|ZP_06687397.1| flagellar basal-body rod protein FlgC [Achromobacter piechaudii ATCC 43553] gi|292816606|gb|EFF75691.1| flagellar basal-body rod protein FlgC [Achromobacter piechaudii ATCC 43553] Length = 139 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 21/45 (46%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ N + + E MI ++ + + +++ + M + + Sbjct: 91 AQGYISMPNVDPVAETVNMIAASRSYQANVEVLNTAKSLMQKTLT 135 Score = 39.6 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 + F+I +A A QR++ A N++N VG +R +V F V A + Q+ Sbjct: 4 LSIFDIAGSALSAQSQRMNVTASNLANADSVVGPDGQPYRARQVVFQ-VNPAAGQAMGQE 62 Query: 56 ISFVASGKEYLSKEV 70 I V Sbjct: 63 IGGVRVAGVIQDPSP 77 >gi|227871683|ref|ZP_03990096.1| flagellar hook-associated protein FlgK [Oribacterium sinus F0268] gi|227842482|gb|EEJ52699.1| flagellar hook-associated protein FlgK [Oribacterium sinus F0268] Length = 594 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + F+ L+A +++L V N++N +T G+ ++K S + + V G Sbjct: 7 SGFDTALSALRMNQKKLDVVGHNLANMNTEGYTRQELKTSSINYENPTSFYMNSNDVNVG 66 Query: 63 KEYLSKEV 70 EV Sbjct: 67 FGVAMDEV 74 >gi|221636051|ref|YP_002523927.1| flagellar basal-body rod protein FlgB [Thermomicrobium roseum DSM 5159] gi|221157824|gb|ACM06942.1| flagellar basal-body rod protein FlgB [Thermomicrobium roseum DSM 5159] Length = 138 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 AL R A N++N +T GFR V+F +++ A+ N ++ V + +++ Sbjct: 15 LDALALRQQVTASNVANAETPGFRGQAVRFEDLLQAMLNGTFARLPLVRTDSRHIAVTAS 74 Query: 72 S 72 S Sbjct: 75 S 75 >gi|312876493|ref|ZP_07736476.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor lactoaceticus 6A] gi|311796704|gb|EFR13050.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor lactoaceticus 6A] Length = 133 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +R +++N++N DT G++ + F + N Sbjct: 20 KRNEIISNNIANADTPGYKAKDLDFEAFLQKSLNQ 54 >gi|308050026|ref|YP_003913592.1| flagellar basal-body rod protein FlgC [Ferrimonas balearica DSM 9799] gi|307632216|gb|ADN76518.1| flagellar basal-body rod protein FlgC [Ferrimonas balearica DSM 9799] Length = 138 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +G++ SN N++ EM M+ T+ F + ++ +SM + + + Sbjct: 91 QGYVTYSNVNTVQEMADMMAATRAFETSVDIMSRA-RSMQQGLLKLG 136 >gi|317121813|ref|YP_004101816.1| flagellar basal-body rod protein FlgC [Thermaerobacter marianensis DSM 12885] gi|315591793|gb|ADU51089.1| flagellar basal-body rod protein FlgC [Thermaerobacter marianensis DSM 12885] Length = 179 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 +F+I + A RL +A N++N DT G +R + F E V + ++ Sbjct: 7 NTFDIAASGMTAQRLRLDLIASNLANVDTTRTAQGGPYRRLVPVFQERVRPFAEVLRERA 66 Query: 57 SFVASGKEYLSKEVGS 72 + G+ Sbjct: 67 AGFGGMSGSAGGVSGA 82 Score = 39.6 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 15/36 (41%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N + + EM ++ T+ + + + L A+ Sbjct: 139 NVDPLMEMVNLLAATRAYEANVAVFSAARTLALRAL 174 >gi|307131603|ref|YP_003883619.1| flagellar hook-associated protein flgK [Dickeya dadantii 3937] gi|306529132|gb|ADM99062.1| Flagellar hook-associated protein flgK [Dickeya dadantii 3937] Length = 640 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N G++ A + LSTV++N+SN G+ + A N + ++ Sbjct: 1 MSNLINTGMSGLSAAQAALSTVSNNISNQAVTGYSRQNA-----LLAQNNGTNISAGYIG 55 Query: 61 SGKEYLS 67 +G +S Sbjct: 56 NGVTVVS 62 >gi|251797448|ref|YP_003012179.1| flagellar basal-body rod protein FlgB [Paenibacillus sp. JDR-2] gi|247545074|gb|ACT02093.1| flagellar basal-body rod protein FlgB [Paenibacillus sp. JDR-2] Length = 132 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID 53 A A E R VA+N++N DT F+ +V F E++ Sbjct: 12 ALKASELRQGVVANNIANVDTPNFKRSEVLFEELLSQEMGGQT 54 >gi|294140191|ref|YP_003556169.1| flagellar hook-associated protein FlgK [Shewanella violacea DSS12] gi|293326660|dbj|BAJ01391.1| flagellar hook-associated protein FlgK, putative [Shewanella violacea DSS12] Length = 638 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 NI LA + +L+ ++N++N +T G+ + S + D Sbjct: 3 MDLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSLESQRFGD 52 >gi|169831934|ref|YP_001717916.1| flagellar hook-associated protein FlgK [Candidatus Desulforudis audaxviator MP104C] gi|169638778|gb|ACA60284.1| flagellar hook-associated protein FlgK [Candidatus Desulforudis audaxviator MP104C] Length = 532 Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 8/57 (14%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVK--------FSEVVGAIKNDIDQKISFV 59 + +Q ++T A N++N +T G++ + + V + +S V Sbjct: 12 SLHGHQQAMNTTAHNIANINTPGYKRQEAVLQSTPAIAYPSVFSPRPGQLGTGMSAV 68 Score = 40.8 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 19/132 (14%) Query: 125 DMASVPIQIPQKDEIFNVGEKGEISQKGK-VIATMGLYSVDMSQGFVRREN--SGISPNI 181 D + PI I + E G +++ + +A + V + G + G + Sbjct: 404 DYKTGPISIGPEAE----GALAQVTAEQAWAVAQIREQRVVDADGDGEDDTTLDGYYQQL 459 Query: 182 PPTPLEDLS-------GVTVKRGFLED-----SNANSMYEMGQMIHLTQKFNSITTLIDE 229 DL+ V+ G +E S N E+ +MI + + +I Sbjct: 460 VTGIGADLNAAQRGRDNVSAILGQIEALRESVSGVNLDEELTRMIQYQYGYQAAARVITV 519 Query: 230 NEKSMLEAIRNI 241 ++ + I + Sbjct: 520 LDELLDTLINRM 531 >gi|291529042|emb|CBK94628.1| flagellar basal-body rod protein FlgC [Eubacterium rectale M104/1] Length = 146 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 +FNI + A R +A N++N +T +R V FSE + I Sbjct: 5 QAFNISASGMTAERFRTDIIAQNIANVNTTSTKGGTPYRRKIVTFSEKNVTPFSQIYSSS 64 Query: 57 SFVASGKEYLSKEVGSFISTG 77 A G V S ST Sbjct: 65 KKAAVGNGVKVSSVTSDYSTD 85 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N++ EM +I T+ + + T + ++ ++ Sbjct: 107 NVNTVTEMTNLIDATRAYEANATAFEASKSMAQNGLQ 143 >gi|260893877|ref|YP_003239974.1| flagellar basal-body rod protein FlgC [Ammonifex degensii KC4] gi|260866018|gb|ACX53124.1| flagellar basal-body rod protein FlgC [Ammonifex degensii KC4] Length = 137 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 18/36 (50%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N E+ +I + + + T+++ ++ +AI Sbjct: 97 NVNVADEVVDLIGAARAYEANATVLETAKEMARQAI 132 Score = 43.5 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKND-IDQKIS 57 F I + A RL VA+N++N DT G +R F++V+ A K + + Sbjct: 7 FRISGSGLTAERLRLDLVANNLANIDTTRTPAGGPYRRRVPVFAQVLEARKEGMVGMGVR 66 Query: 58 FVASGKEYLSKEV 70 VA ++ +V Sbjct: 67 VVAIVEDQSPFKV 79 >gi|157961177|ref|YP_001501211.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC 700345] gi|157846177|gb|ABV86676.1| flagellar hook-associated protein FlgK [Shewanella pealeana ATCC 700345] Length = 640 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L+ ++N++N +T G+ V S + + ND ++V+ K Sbjct: 6 MNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNDFYGAGTYVSDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RVYND 70 >gi|148546704|ref|YP_001266806.1| flagellar basal body rod protein FlgC [Pseudomonas putida F1] gi|148510762|gb|ABQ77622.1| flagellar basal-body rod protein FlgC [Pseudomonas putida F1] Length = 147 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ F + L++ + M + + Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVLT 144 Score = 42.7 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI + A RL+TVA N++N +TV +R F+ + Q + Sbjct: 7 FNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGSSQSL 64 >gi|225181620|ref|ZP_03735061.1| flagellar hook-associated protein FlgK [Dethiobacter alkaliphilus AHT 1] gi|225167728|gb|EEG76538.1| flagellar hook-associated protein FlgK [Dethiobacter alkaliphilus AHT 1] Length = 494 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 1/61 (1%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG-AIKNDIDQKISFVASG 62 NI A ++ L A N++N +T G+ S N S V Sbjct: 6 GLNISRLGMQAQQKALEVTAHNVANANTPGYSRQVAGMSTTTPLPYPNGQGMLGSGVKVS 65 Query: 63 K 63 + Sbjct: 66 Q 66 >gi|57167572|ref|ZP_00366712.1| flagellar basal-body rod protein FlgC [Campylobacter coli RM2228] gi|305433078|ref|ZP_07402234.1| flagellar basal-body rod protein FlgC [Campylobacter coli JV20] gi|57020694|gb|EAL57358.1| flagellar basal-body rod protein FlgC [Campylobacter coli RM2228] gi|304443779|gb|EFM36436.1| flagellar basal-body rod protein FlgC [Campylobacter coli JV20] Length = 164 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N + EM +I T+ + + + + AI Sbjct: 116 AQGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAI 159 Score = 40.0 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%) Query: 11 AQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 A R++ ++ N++N +T G +R +V F Sbjct: 13 GLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFK 50 >gi|294679035|ref|YP_003579650.1| flagellar basal-body rod protein FlgC [Rhodobacter capsulatus SB 1003] gi|294477855|gb|ADE87243.1| flagellar basal-body rod protein FlgC [Rhodobacter capsulatus SB 1003] Length = 131 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID 53 ++ ++ + A RL V++N++N DT G+ V+F E+ Sbjct: 6 STLSVSASGLKAQSMRLRHVSENIANADTPGYHRKVVRFEELAAQKDGGAT 56 Score = 41.6 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 P +PL D + G+ + SN + + E+ + + + + D+ + M A+ Sbjct: 75 DPGSPLADEN------GYYDGSNVDLVVEIADARQAQRSYEANLRMFDQT-RQMSSALME 127 Query: 241 I 241 + Sbjct: 128 L 128 >gi|194015045|ref|ZP_03053662.1| flagellar basal-body rod protein FlgC [Bacillus pumilus ATCC 7061] gi|194014071|gb|EDW23636.1| flagellar basal-body rod protein FlgC [Bacillus pumilus ATCC 7061] Length = 150 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM +I ++ + + T ++ N+ +++A+ Sbjct: 105 GYVQTPNVDPLKEMVDLISSSRSYEANVTALNANKSMLMKAL 146 Score = 39.3 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 21/111 (18%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKV-------KFSEVV 45 + N +A A R+ V+ N++N DT G +R V FS ++ Sbjct: 5 SGVNASASALTAQRLRMDVVSSNLANMDTTRAKQVDGNWEPYRRKLVTLQPSGESFSSIL 64 Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + N + + V + K + + T D + + +++P Sbjct: 65 NSNMNSSGKLGNGVKATKITEDETPFNLQYDPTNPDA--NENGY--VQTPN 111 >gi|296135666|ref|YP_003642908.1| flagellar hook-associated protein FlgK [Thiomonas intermedia K12] gi|295795788|gb|ADG30578.1| flagellar hook-associated protein FlgK [Thiomonas intermedia K12] Length = 667 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 2/74 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFVASG 62 N L A + L +N++N +T G+ S + ++ + A Sbjct: 8 LNNALTGLQAAQSALQVTGNNIANVNTPGYSRETAVQSTLTPSLYGGQYLGNGTQIDAVT 67 Query: 63 KEYLSKEVGSFIST 76 + Y S ST Sbjct: 68 RSYNSYLQSQVWST 81 >gi|256371026|ref|YP_003108850.1| flagellar hook-associated protein FlgK [Acidimicrobium ferrooxidans DSM 10331] gi|256007610|gb|ACU53177.1| flagellar hook-associated protein FlgK [Acidimicrobium ferrooxidans DSM 10331] Length = 462 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 20/37 (54%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 + I L+ A + L VA N++N +T G+++ V Sbjct: 5 ALYIALSGLEAQQVGLDVVAQNVANANTPGYQSESVD 41 >gi|270262403|ref|ZP_06190674.1| flagellar basal-body rod protein FlgC [Serratia odorifera 4Rx13] gi|270043087|gb|EFA16180.1| flagellar basal-body rod protein FlgC [Serratia odorifera 4Rx13] Length = 134 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM I ++ + + +++ + M++ + Sbjct: 80 PGNPLADGK------GYVRMPNVDVVSEMVNTISASRSYQANVEVLNTTKSMMMKTLT 131 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 17/102 (16%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QR++ A NM+N G +R +V F + Q Sbjct: 4 LNIFDISGSALSAQSQRMNVSASNMANADSVTGPDGEPYRAKQVVFE-----VAAAAGQP 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTELDFALEGDAWFALESPR 96 V + + G L +G + + P Sbjct: 59 TGGVRVSQVVDDPAPERLVYQPGNPL---ADGKGY--VRMPN 95 >gi|167034946|ref|YP_001670177.1| flagellar basal body rod protein FlgC [Pseudomonas putida GB-1] gi|166861434|gb|ABY99841.1| flagellar basal-body rod protein FlgC [Pseudomonas putida GB-1] Length = 147 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ F + L++ + M + + Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVLT 144 Score = 42.7 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI + A RL+TVA N++N +TV +R F+ + Q + Sbjct: 7 FNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGGSQSL 64 >gi|307265481|ref|ZP_07547036.1| flagellar hook-associated protein FlgK [Thermoanaerobacter wiegelii Rt8.B1] gi|306919435|gb|EFN49654.1| flagellar hook-associated protein FlgK [Thermoanaerobacter wiegelii Rt8.B1] Length = 480 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 1/69 (1%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFVAS 61 I ++ L N++N +T G+ V + + + DQ + Sbjct: 5 QGLEIAKTGLFVSQKALDVTGHNIANANTTGYTRQVVDMASIAPPTTFGMYDQWGKAIGE 64 Query: 62 GKEYLSKEV 70 G + Sbjct: 65 GVKIQDIRQ 73 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM MI + + + +I ++ + I + Sbjct: 436 SGVSLDEEMTNMIKYQKSYAASARVITAMDELLDTLINRMG 476 >gi|158320510|ref|YP_001513017.1| flagellar basal-body rod protein FlgC [Alkaliphilus oremlandii OhILAs] gi|158140709|gb|ABW19021.1| flagellar basal-body rod protein FlgC [Alkaliphilus oremlandii OhILAs] Length = 147 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + M EM MI ++ + + T ++ + L+ + Sbjct: 102 GYVKMPNVDIMTEMANMISASRAYEANITAMNGTKSMFLKTL 143 Score = 42.0 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 S NI + A R+ N++N +T G +R V F Sbjct: 5 NSLNISASGLTAERLRMDIATKNIANANTTRTSNGTPYRRQVVVFK 50 >gi|209521587|ref|ZP_03270285.1| flagellar basal-body rod protein FlgC [Burkholderia sp. H160] gi|209497970|gb|EDZ98127.1| flagellar basal-body rod protein FlgC [Burkholderia sp. H160] Length = 141 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P P + G++ N + + EM MI ++ + + ++ + ML+ + Sbjct: 87 PGNPAANAD------GYVTLPNVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLT 138 Score = 43.5 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F + +A A +RL+ A N++N T G ++ +V F+ Sbjct: 5 MNIFGVAGSAMSAQSERLNVTASNLANADSTTGPDGQPYKAKQVVFA 51 >gi|116252321|ref|YP_768159.1| hypothetical protein RL2575 [Rhizobium leguminosarum bv. viciae 3841] gi|115256969|emb|CAK08063.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 101 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 18/29 (62%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGF 34 + L+ A R+S +A+N++N+ T G+ Sbjct: 8 STALSGMRAQTTRVSAIANNIANSSTPGY 36 >gi|56419752|ref|YP_147070.1| flagellar basal body rod protein FlgC [Geobacillus kaustophilus HTA426] gi|56379594|dbj|BAD75502.1| flagellar basal-body rod protein [Geobacillus kaustophilus HTA426] Length = 150 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S NI +A A R+ +A N++N DT Sbjct: 5 QSLNISASALTAQRLRMDVIASNIANVDTT 34 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM +I T+ + + T+++ ++ +++A+ Sbjct: 105 GYVRLPNVDPLKEMVDLIGATRSYEANVTVLNASKGMLMKAL 146 >gi|332533178|ref|ZP_08409047.1| flagellar basal-body rod protein FlgB [Pseudoalteromonas haloplanktis ANT/505] gi|332037460|gb|EGI73914.1| flagellar basal-body rod protein FlgB [Pseudoalteromonas haloplanktis ANT/505] Length = 135 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A L QR +A N++N DT G++ + F+ + A ++ Sbjct: 1 MAISFDKALGVHPQAMLIRSQRAELIATNIANADTPGYKAKDIDFASALKAARSTQQSGN 60 Query: 57 SFVASGKEYL 66 + V + +++ Sbjct: 61 TMVRTNDKHI 70 >gi|325927872|ref|ZP_08189096.1| flagellar basal-body rod protein FlgB [Xanthomonas perforans 91-118] gi|325541712|gb|EGD13230.1| flagellar basal-body rod protein FlgB [Xanthomonas perforans 91-118] Length = 179 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 A EQR+ +A N+SN DT G++ + F + + + + D + K Y Sbjct: 61 ALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSAQGEQDGGLLQTTDAKHY 115 >gi|195952550|ref|YP_002120840.1| flagellar basal-body rod protein FlgC [Hydrogenobaculum sp. Y04AAS1] gi|195932162|gb|ACG56862.1| flagellar basal-body rod protein FlgC [Hydrogenobaculum sp. Y04AAS1] Length = 136 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 17/106 (16%) Query: 144 EKGEISQKGKVIATM---------GLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 G QK + + GL V++S+ +R+ N P P + Sbjct: 37 TDGTPYQKLEPVFQAVYDRNMLSDGLVPVNVSE--IRQSNGFKLIYDPSNPHANT----- 89 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 +G++E+ N N EM MI TQ + + + + + I + Sbjct: 90 -QGYVEEPNINVTTEMVDMITATQSYQANLSAFNMTKNIAQFTINS 134 >gi|218508323|ref|ZP_03506201.1| probable flagellar basal body rod protein [Rhizobium etli Brasil 5] gi|327191050|gb|EGE58103.1| putative flagellar basal body rod protein [Rhizobium etli CNPAF512] Length = 100 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGF 34 NI L+ A R+ +A+N++N+ T G+ Sbjct: 8 NIALSGMRAQMTRIGAIANNVANSSTPGY 36 >gi|26991079|ref|NP_746504.1| flagellar basal body rod protein FlgC [Pseudomonas putida KT2440] gi|24986114|gb|AAN69968.1|AE016635_4 flagellar basal-body rod protein FlgC [Pseudomonas putida KT2440] gi|313497759|gb|ADR59125.1| FlgC [Pseudomonas putida BIRD-1] Length = 147 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ F + L++ + M + + Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVLT 144 Score = 42.7 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI + A RL+TVA N++N +TV +R F+ + Q + Sbjct: 7 FNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGSSQSL 64 >gi|54307268|ref|YP_128288.1| FlgC flagellar basal-body rod protein [Photobacterium profundum SS9] gi|46911688|emb|CAG18486.1| Hypothetical FlgC flagellar basal-body rod protein [Photobacterium profundum SS9] Length = 138 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G++ S N + EM M+ ++ F + ++ +SM ++I + Sbjct: 92 GYVFHSTVNVVEEMADMMAASRNFETNVNVMSRA-RSMQQSILRLG 136 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDT------VGFRTIKVKFSEVVGAIKNDIDQK 55 ++I +A A RL+TVA N++N D G+ + FS V+ + + + Sbjct: 7 YDIAGSAMSAQTIRLNTVASNLANADVVSGSDKTGYHAKRPVFSTVMIDMDSPVPGA 63 >gi|238919265|ref|YP_002932780.1| flagellar hook-associated protein FlgK, [Edwardsiella ictaluri 93-146] gi|238868834|gb|ACR68545.1| flagellar hook-associated protein FlgK, putative [Edwardsiella ictaluri 93-146] Length = 550 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N ++ A + L ++N++N T G+ V +E N F+ Sbjct: 1 MANLINNAMSGLSAAQTALGVTSNNINNVYTAGYNRQTVTLAE-----SNGTSTPAGFIG 55 Query: 61 SGKEY 65 +G Sbjct: 56 NGVTV 60 >gi|222100200|ref|YP_002534768.1| Flagellar basal-body rod protein FlgC [Thermotoga neapolitana DSM 4359] gi|221572590|gb|ACM23402.1| Flagellar basal-body rod protein FlgC [Thermotoga neapolitana DSM 4359] Length = 139 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 17/107 (15%) Query: 133 IPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGV 192 +P E + G I G + + V+ F + P E+ Sbjct: 46 VPVFAEYLRRAKDGRIESAGVKVVKI----VEDPSPFR-----LVYDPTHPDADEN---- 92 Query: 193 TVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM +I+ + +++ + + + A++ Sbjct: 93 ----GYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKNMVNSALQ 135 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKND 51 NI A R+ V+ N++N +T G +R F+E + K+ Sbjct: 7 MNISATGMSAQRLRVEIVSTNIANAETTRTEMGEPYRRKVPVFAEYLRRAKDG 59 >gi|104782845|ref|YP_609343.1| flagellar basal body rod protein FlgC [Pseudomonas entomophila L48] gi|95111832|emb|CAK16556.1| flagellar cell-proximal portion of basal-body rod FlgC [Pseudomonas entomophila L48] Length = 147 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F + L++ K+M++ + + Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTA-KTMMQKVLTLG 146 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI + A RL+TVA N++N +TV +R F+ + + Q + Sbjct: 7 FNIAGSGMSAQNTRLNTVASNIANAETVSSSLDQTYRARHPVFATTFQQAQGGVGQSL 64 >gi|330811237|ref|YP_004355699.1| flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379345|gb|AEA70695.1| Putative flagellar basal-body rod protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 147 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V +++ + P P D G++ N N + EM MI ++ F + ++ Sbjct: 79 GVVEDQSNLEARYEPNHPAADAK------GYVYYPNVNVVEEMADMISASRSFQTNAEMM 132 Query: 228 DENEKSMLEAIRNIA 242 + K+M++ + + Sbjct: 133 NTA-KTMMQKVLTLG 146 Score = 42.3 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI +A A RL+TVA N++N +TV +R F+ + ++ + Sbjct: 7 FNIAGSAMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGGSDSL 64 >gi|306817677|ref|ZP_07451419.1| possible flagellar hook-associated protein FlgK [Mobiluncus mulieris ATCC 35239] gi|304649491|gb|EFM46774.1| possible flagellar hook-associated protein FlgK [Mobiluncus mulieris ATCC 35239] Length = 916 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 8/85 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S N GL A ++ + N+ N +T G+ +V+ + + I G Sbjct: 6 SSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQGGG 65 Query: 63 KEYLS-KEVGSF-------ISTGTE 79 E + +G F + TG Sbjct: 66 VEITGERRLGDFFLDAKLRMETGRA 90 >gi|239628951|ref|ZP_04671982.1| flagellar basal-body rod protein FlgC [Clostridiales bacterium 1_7_47_FAA] gi|239519097|gb|EEQ58963.1| flagellar basal-body rod protein FlgC [Clostridiales bacterium 1_7_47FAA] Length = 144 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N NS EM ++ ++ + + T ++ + L+A+ Sbjct: 99 GYVMMPNVNSAEEMVDLMAASRAYEANVTALNIAKSMALKAL 140 Score = 39.3 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQK 55 S NI +A A R + N++N +T G +R +V F E K+++ + Sbjct: 4 LDSLNITGSALTAERFRTDIIMQNLANQNTTRTADGGPYRRKQVVFRENSLNFKSELGKA 63 Query: 56 ISFVASGKEYL 66 ++ +G Y+ Sbjct: 64 MTKAENGGVYV 74 >gi|166712065|ref|ZP_02243272.1| flagellar basal body rod protein FlgB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 133 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%) Query: 1 MQTSFNIGL----AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M + F+ L A EQR+ +A N+SN DT G++ + F + + + + D + Sbjct: 1 MSSPFSSFLGVHGDALALREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSAQGEQDGGL 60 Query: 57 SFVASGKEYLSKEVGSF 73 K Y G Sbjct: 61 MQTTDAKHYAVGGGGGL 77 >gi|312135857|ref|YP_004003195.1| flagellar basal-body rod protein flgb [Caldicellulosiruptor owensensis OL] gi|311775908|gb|ADQ05395.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor owensensis OL] Length = 133 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +R +++N++N DT G++ + F + N Sbjct: 20 KRNEIISNNIANADTPGYKAKDLNFEAFLQRSFNQ 54 >gi|311694367|gb|ADP97240.1| flagellar hook-associated protein FlgK [marine bacterium HP15] Length = 676 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M IGL L+ + L+T +N++N +T G+ +V F + + Sbjct: 1 MAGLIGIGLTGILSHQAALNTTGNNITNANTPGYSRQEVLFE-----TQEGQRTGAGTIG 55 Query: 61 SGKEYLS 67 SG Sbjct: 56 SGVNVAD 62 >gi|332701538|ref|ZP_08421626.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus str. Walvis Bay] gi|332551687|gb|EGJ48731.1| flagellar hook-associated protein FlgK [Desulfovibrio africanus str. Walvis Bay] Length = 696 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS 42 + + IG A L + ++ +NM+N +T G+ V F+ Sbjct: 2 ISNLYYIGANALLNYQTAINVTGNNMANAETAGYSRRTVDFA 43 >gi|88858146|ref|ZP_01132788.1| flagellar basal-body rod protein FlgB [Pseudoalteromonas tunicata D2] gi|88819763|gb|EAR29576.1| flagellar basal-body rod protein FlgB [Pseudoalteromonas tunicata D2] Length = 134 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 +F I A LA QR +A N++N DT G++ + F++ + + K+ ++S Sbjct: 6 DKAFGIHPNAMLARVQRAEVLASNIANADTPGYKAKDIDFAQALKSAKSAQSSQLS 61 >gi|160880851|ref|YP_001559819.1| flagellar basal-body rod protein FlgC [Clostridium phytofermentans ISDg] gi|160429517|gb|ABX43080.1| flagellar basal-body rod protein FlgC [Clostridium phytofermentans ISDg] Length = 150 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 11/76 (14%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 NI + A R+ ++ N++N +T G +R V FSE + Sbjct: 5 NGMNISASGMSAQRLRMDIISQNIANVETTRDENGNPYRRKTVVFSE-----RESGSFGT 59 Query: 57 SFVASGKEYLSKEVGS 72 S G+ Sbjct: 60 VLAQKAASKASDTQGN 75 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N++ EM +I T+ + + T + + +L+ + Sbjct: 105 GYVTMPNVNTVTEMTNLISATRSYEANVTAFNATKNMLLKGL 146 >gi|302874586|ref|YP_003843219.1| flagellar basal-body rod protein FlgB [Clostridium cellulovorans 743B] gi|307690803|ref|ZP_07633249.1| flagellar basal body rod protein FlgB [Clostridium cellulovorans 743B] gi|302577443|gb|ADL51455.1| flagellar basal-body rod protein FlgB [Clostridium cellulovorans 743B] Length = 129 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 8/82 (9%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---DQKISFVASGKEYLS- 67 A+ R VA+N++N +T GF+ V F E + DI ++ G Y S Sbjct: 16 LDAVAIRNRVVANNIANINTKGFKRQYVSFEEQLKKSVKDIELKTTDRRHLSDGTTYGSA 75 Query: 68 ----KEVGSFISTGTELDFALE 85 S G +D +E Sbjct: 76 VVKKDTKTSVREDGNNVDMDIE 97 >gi|152965588|ref|YP_001361372.1| flagellar hook-associated protein FlgK [Kineococcus radiotolerans SRS30216] gi|151360105|gb|ABS03108.1| flagellar hook-associated protein FlgK [Kineococcus radiotolerans SRS30216] Length = 482 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK 55 + N A A ++ + T N++N +T G+ +V+ S V QK Sbjct: 5 SGINTASRALGAAQRGMETTGQNIANVNTPGYSRQRVEQSSSVLNQTGQFTQK 57 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 4/38 (10%), Positives = 16/38 (42%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 S N EM ++ +++ ++ ++++ + Sbjct: 442 SGVNLDEEMTNLVAYQHAYSAAAKVLTTMDEALQSLLN 479 >gi|168187558|ref|ZP_02622193.1| flagellar basal-body rod protein FlgC [Clostridium botulinum C str. Eklund] gi|169294598|gb|EDS76731.1| flagellar basal-body rod protein FlgC [Clostridium botulinum C str. Eklund] Length = 145 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N N + EM MI T+ + + T I+ ++ ++A+ Sbjct: 100 GYVLMPNVNILNEMADMIAATRAYEANVTAINSSKNMFMKAL 141 >gi|294501824|ref|YP_003565524.1| flagellar hook-associated protein FlgK [Bacillus megaterium QM B1551] gi|294351761|gb|ADE72090.1| flagellar hook-associated protein FlgK [Bacillus megaterium QM B1551] Length = 507 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + A + L T+ N+SN +T G+ +V ++Q + G Sbjct: 7 GLQVAKRGMDAQQAALYTIGHNVSNANTPGYTRQRVSLETFPAYPAPGMNQTGTAGQIGM 66 Query: 64 EYLSKEVGSFIST 76 + V T Sbjct: 67 GVEASTVERIRDT 79 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 195 KRGFLE-----DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +G +E S + EM MI +N+ ++ ++ + + + + + Sbjct: 451 LQGAVEQRRQSTSAVSLDEEMTNMIQFQHAYNASARMVTMIDEMLDKIVNGLGT 504 >gi|160939631|ref|ZP_02086979.1| hypothetical protein CLOBOL_04523 [Clostridium bolteae ATCC BAA-613] gi|158437422|gb|EDP15186.1| hypothetical protein CLOBOL_04523 [Clostridium bolteae ATCC BAA-613] Length = 144 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N NS EM ++ ++ + + T ++ + L+A+ Sbjct: 99 GYVMMPNVNSAEEMVDLMAASRAYEANVTALNVAKSMALKAL 140 Score = 40.0 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQK 55 S NI +A A R + N++N +T G ++ +V F E K+++ + Sbjct: 4 LDSLNITGSALTAERFRTDIIMQNLANQNTTRTAEGGPYKRKQVVFRENTLNFKSELGKA 63 Query: 56 ISFVASGKEYL 66 ++ +G ++ Sbjct: 64 MTKAENGGVFV 74 >gi|303248256|ref|ZP_07334519.1| protein of unknown function DUF1078 domain protein [Desulfovibrio fructosovorans JJ] gi|302490394|gb|EFL50305.1| protein of unknown function DUF1078 domain protein [Desulfovibrio fructosovorans JJ] Length = 128 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + + +A A+ ++ A+N++N +T G+++ + S + + + Sbjct: 1 MTDAISAAQSALGAMSTSMAVTANNVANVNTDGYKSQDARLSTGPDGQGTQVSSIVEDTS 60 Query: 61 SG 62 +G Sbjct: 61 AG 62 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 15/104 (14%) Query: 135 QKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV 194 +D + G G+ +Q ++ D S G +R E + Sbjct: 36 SQDARLSTGPDGQGTQVSSIVE-------DTSAGALRAETVAAENQAGAYEPQMD----- 83 Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +E SN + + + MI ++ F + +I ++ + Sbjct: 84 ---MVEMSNVDLVRQNVNMIQDSRAFEANVAVIRTADEMAGTLL 124 >gi|297530608|ref|YP_003671883.1| flagellar basal-body rod protein FlgC [Geobacillus sp. C56-T3] gi|297253860|gb|ADI27306.1| flagellar basal-body rod protein FlgC [Geobacillus sp. C56-T3] Length = 150 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S NI +A A R+ +A N++N DT Sbjct: 5 QSLNISASALTAQRLRMDVIASNIANVDTT 34 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM +I T+ + + T+++ ++ +++A+ Sbjct: 105 GYVRLPNVDPLKEMVDLIGATRSYEANVTVLNASKGMLMKAL 146 >gi|170722894|ref|YP_001750582.1| flagellar basal body rod protein FlgC [Pseudomonas putida W619] gi|169760897|gb|ACA74213.1| flagellar basal-body rod protein FlgC [Pseudomonas putida W619] Length = 147 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ F + L++ + M + + Sbjct: 108 NVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVLT 144 Score = 42.3 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI + A RL+TVA N++N +TV +R F+ + Q + Sbjct: 7 FNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGGSQSL 64 >gi|70731825|ref|YP_261567.1| flagellar basal body rod protein FlgC [Pseudomonas fluorescens Pf-5] gi|68346124|gb|AAY93730.1| flagellar basal-body rod protein FlgC [Pseudomonas fluorescens Pf-5] Length = 147 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V +++ + P P D G++ N N + EM MI ++ F + ++ Sbjct: 79 GVVEDQSNLEARYEPNHPAADAK------GYVYYPNVNVVEEMADMISASRSFQTNAEMM 132 Query: 228 DENEKSMLEAIRNIA 242 + K+M++ + + Sbjct: 133 NTA-KTMMQKVLTLG 146 Score = 39.3 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 FNI + A RL+TVA N++N ++V +R F+ + ++ + Sbjct: 7 FNIAGSGMSAQTTRLNTVASNIANAESVSSSIDQTYRARHPVFATMFQGAQSGGSDSLFQ 66 Query: 59 VASGKEYLSKEVGSFISTGT 78 + +G Sbjct: 67 NQDAAGQGVQVLGVVEDQSN 86 >gi|205373369|ref|ZP_03226173.1| flagellar basal body rod protein FlgC [Bacillus coahuilensis m4-4] Length = 149 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 26/42 (61%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM +I T+ + + T+++ N+ +++++ Sbjct: 104 GYVKMPNVDPLREMTDLISATRSYEANVTVMNANKALLMKSL 145 Score = 42.0 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S NI +A A R+ ++ N++N DT Sbjct: 5 QSINISTSALTAQRLRMDVISSNVANADTT 34 >gi|170694390|ref|ZP_02885544.1| flagellar basal-body rod protein FlgC [Burkholderia graminis C4D1M] gi|170140813|gb|EDT08987.1| flagellar basal-body rod protein FlgC [Burkholderia graminis C4D1M] Length = 127 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P P + G++ N + + EM MI ++ + + ++ + ML+ + Sbjct: 72 DPGNPAANAD------GYVTLPNVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLT 124 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%) Query: 12 QLALEQRLSTVADNMSNT-DTVG-----FRTIKVKF 41 A QRL+ A N++N T G ++ +V F Sbjct: 1 MSAQSQRLNVTASNLANADSTTGPDGQPYKAKQVVF 36 >gi|157362949|ref|YP_001469716.1| flagellar basal-body rod protein FlgC [Thermotoga lettingae TMO] gi|157313553|gb|ABV32652.1| flagellar basal-body rod protein FlgC [Thermotoga lettingae TMO] Length = 137 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM +I + + + + + + + A++ Sbjct: 91 GYVSLPNVNVLREMVDLISAQRSYEANISAFNTTKSMINSALQ 133 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKISF 58 N+ + A R+ ++ N++N++T G +R FSE + + + Sbjct: 7 MNVSASGMTAQRLRVDIISSNIANSETTRTDRGTPYRRRVPVFSEYLISDGKSASTGVKV 66 Query: 59 V 59 V Sbjct: 67 V 67 >gi|332994156|gb|AEF04211.1| flagellar hook-associated protein FlgK [Alteromonas sp. SN2] Length = 709 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--SEVVGAIKNDIDQKISFVASG 62 F++ + A + L T ++N++N +T G+ + + S+V G + ++ I+ A Sbjct: 7 FSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTELVNSDVFGVEIGNTERIINVFAQN 66 Query: 63 KEYLS-KEVGSFI 74 + VG Sbjct: 67 QLRRDITSVGELE 79 >gi|307546962|ref|YP_003899441.1| flagellar hook-associated protein FlgK [Halomonas elongata DSM 2581] gi|307218986|emb|CBV44256.1| flagellar hook-associated protein FlgK [Halomonas elongata DSM 2581] Length = 555 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID 53 + F+ GL+ A + LST ++N+SN T G+ E ++ Sbjct: 1 MSIFSTGLSGLNAAQNALSTTSNNISNVFTPGYNREVAILGESASGGGVQVN 52 >gi|307731365|ref|YP_003908589.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1003] gi|307585900|gb|ADN59298.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1003] Length = 141 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P P + G++ N + + EM MI ++ + + ++ + ML+ + Sbjct: 86 DPGNPAANAD------GYVTLPNVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLT 138 Score = 44.6 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F + +A A QRL+ A N++N T G ++ +V F+ Sbjct: 5 MNIFGVAGSAMSAQSQRLNVTASNLANADSTTGPDGQPYKAKQVVFA 51 >gi|167644972|ref|YP_001682635.1| flagellar hook-associated protein FlgK [Caulobacter sp. K31] gi|167347402|gb|ABZ70137.1| flagellar hook-associated protein FlgK [Caulobacter sp. K31] Length = 704 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG 46 T N+ + +A + L V+DN++N +T G+ + S +V Sbjct: 4 NTILNVATSGMMAAQTGLRVVSDNIANINTAGYVRKTIAQSNLVS 48 >gi|91785636|ref|YP_560842.1| flagellar basal body rod protein FlgC [Burkholderia xenovorans LB400] gi|296157458|ref|ZP_06840293.1| flagellar basal-body rod protein FlgC [Burkholderia sp. Ch1-1] gi|91689590|gb|ABE32790.1| Flagellar basal-body rod protein FlgC [Burkholderia xenovorans LB400] gi|295892230|gb|EFG72013.1| flagellar basal-body rod protein FlgC [Burkholderia sp. Ch1-1] Length = 141 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P P + G++ N + + EM MI ++ + + ++ + ML+ + Sbjct: 86 DPGNPAANAD------GYVTLPNVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLT 138 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F + +A A QRL+ A N++N T G ++ +V F+ Sbjct: 5 MNIFGVAGSAMSAQSQRLNVTASNLANADSTTGPDGQPYKAKQVVFA 51 >gi|307609983|emb|CBW99512.1| flagellar hook-associated protein 1 [Legionella pneumophila 130b] Length = 649 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + NI + A ++ L +N++N T G+ ++F+ + I +S Sbjct: 1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVS 60 Query: 60 ASGKEYLSKEVGSFIST 76 + + ST Sbjct: 61 SIYRNVDQFANAQVRST 77 >gi|54294169|ref|YP_126584.1| flagellar hook-associated protein FlgK [Legionella pneumophila str. Lens] gi|53754001|emb|CAH15472.1| flagellar hook-associated protein 1 [Legionella pneumophila str. Lens] Length = 649 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + NI + A ++ L +N++N T G+ ++F+ + I +S Sbjct: 1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVS 60 Query: 60 ASGKEYLSKEVGSFIST 76 + + ST Sbjct: 61 SIYRNVDQFANAQVRST 77 >gi|218781795|ref|YP_002433113.1| hypothetical protein Dalk_3959 [Desulfatibacillum alkenivorans AK-01] gi|218763179|gb|ACL05645.1| Putative flagellar basal body rod protein [Desulfatibacillum alkenivorans AK-01] Length = 117 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N ++A A ++ + A+N +N DT G++ +V SE +K++ + Sbjct: 1 MIAGINASVSALNAYGRKFQSTANNTANIDTDGYKKTRVTMSEAANGSVEAKSEKVNSPS 60 Query: 61 SGKEYLSKEVGSFISTGTELDFA 83 L+ E GS + + +D A Sbjct: 61 PIVSELTSE-GSVLVEKSNVDLA 82 Score = 40.8 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 16/40 (40%) Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +E SN + E+ I + + + + ++ + + Sbjct: 74 VEKSNVDLAQEVTNQILAARGYEANLASVKAFDEMLGSTL 113 >gi|302669846|ref|YP_003829806.1| flagellar hook-associated protein FlgK1 [Butyrivibrio proteoclasticus B316] gi|302394319|gb|ADL33224.1| flagellar hook-associated protein FlgK1 [Butyrivibrio proteoclasticus B316] Length = 557 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 22/64 (34%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +G + + L+T A NM+N DT G+ +V I+ Sbjct: 4 MANLYVGQSGLQTSQNALNTTAHNMANVDTEGYTRQQVSQGTRAYQTLERRYDTIAPKQI 63 Query: 62 GKEY 65 G Sbjct: 64 GTGV 67 >gi|227876730|ref|ZP_03994839.1| possible flagellar hook-associated protein FlgK [Mobiluncus mulieris ATCC 35243] gi|269976257|ref|ZP_06183253.1| putative flagellar hook-associated protein FlgK [Mobiluncus mulieris 28-1] gi|227842627|gb|EEJ52827.1| possible flagellar hook-associated protein FlgK [Mobiluncus mulieris ATCC 35243] gi|269935586|gb|EEZ92124.1| putative flagellar hook-associated protein FlgK [Mobiluncus mulieris 28-1] Length = 1034 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 8/85 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S N GL A ++ + N+ N +T G+ +V+ + + I G Sbjct: 6 SSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQGGG 65 Query: 63 KEYLS-KEVGSF-------ISTGTE 79 E + +G F + TG Sbjct: 66 VEITGERRLGDFFLDAKLRMETGRA 90 >gi|149182549|ref|ZP_01861021.1| flagellar hook-associated protein [Bacillus sp. SG-1] gi|148849741|gb|EDL63919.1| flagellar hook-associated protein [Bacillus sp. SG-1] Length = 529 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 6/74 (8%) Query: 2 QTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQK 55 S GL + L N++N +T+GF ++ F E + Q Sbjct: 1 MRSTFQGLETARRGMYTQQSALQVTGHNVANANTLGFTRQRINFEQTETYPPPAMNKPQI 60 Query: 56 ISFVASGKEYLSKE 69 + +G E S + Sbjct: 61 PGQIGTGVEAESVQ 74 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 167 QGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLE-----DSNANSMYEMGQMIHLTQKFN 221 + + G++ + + T+++ +E S + EM MI +N Sbjct: 446 RNYYEVLIGGMAVDAQNAVRLTDNSATLRQ-AVEERRMSTSAVSLDEEMTNMIQYQHAYN 504 Query: 222 SITTLIDENEKSMLEAIRNIAS 243 + +I ++ + + I + + Sbjct: 505 ASARMISLQDELLDKIINGMGT 526 >gi|317130315|ref|YP_004096597.1| flagellar hook-associated protein FlgK [Bacillus cellulosilyticus DSM 2522] gi|315475263|gb|ADU31866.1| flagellar hook-associated protein FlgK [Bacillus cellulosilyticus DSM 2522] Length = 550 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASGKE 64 A + L T N++N +T G+ +V FS E ++ + +G + Sbjct: 15 AMTTHQSALHTTGHNIANANTPGYSRQRVNFSTTEAFPTPAFNMPNMPGQIGTGVK 70 Score = 36.6 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 14/39 (35%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI +N+ I ++ + I + Sbjct: 508 VSLDEEMTNMIQFQHAYNAAARNITMIDEMLDIIINRMG 546 >gi|125972983|ref|YP_001036893.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum ATCC 27405] gi|125713208|gb|ABN51700.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum ATCC 27405] Length = 134 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 + A R ++ N++N DT G++ V F E + Sbjct: 15 SLDAALLRNEAISQNIANVDTTGYKRKTVAFEEYL 49 >gi|323703167|ref|ZP_08114820.1| flagellar basal-body rod protein FlgC [Desulfotomaculum nigrificans DSM 574] gi|323531826|gb|EGB21712.1| flagellar basal-body rod protein FlgC [Desulfotomaculum nigrificans DSM 574] Length = 145 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 9/77 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG---------FRTIKVKFSEVVGAIKNDID 53 SF I + + RL +A+N++N +T G +R F+E + Sbjct: 5 DSFAISASGMTSERLRLDLIANNVANMNTAGRPNDPNNPVYRRRVPVFAEQLRQTMAANS 64 Query: 54 QKISFVASGKEYLSKEV 70 + + + ++ Sbjct: 65 TEPRGAGVRVKAIVEDP 81 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 19/36 (52%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI ++ + + T ++ + L+A+ Sbjct: 105 NINIVNEMVDMITASRAYEANVTALNAAKSMALKAL 140 >gi|295707173|ref|YP_003600248.1| flagellar hook-associated protein FlgK [Bacillus megaterium DSM 319] gi|294804832|gb|ADF41898.1| flagellar hook-associated protein FlgK [Bacillus megaterium DSM 319] Length = 507 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + A + L T+ N+SN +T G+ +V ++Q + G Sbjct: 7 GLQVAKRGMDAQQAALYTIGHNVSNANTPGYTRQRVSLETFPAYPAPGMNQTGTAGQIGM 66 Query: 64 EYLSKEVGSFIST 76 + V T Sbjct: 67 GVEASTVERIRDT 79 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 195 KRGFLE-----DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +G +E S + EM MI +N+ ++ ++ + + + + + Sbjct: 451 LQGAVEQRRQSTSAVSLDEEMTNMIQFQHAYNASARMVTMIDEMLDKIVNGLGT 504 >gi|220934400|ref|YP_002513299.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp. HL-EbGR7] gi|219995710|gb|ACL72312.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp. HL-EbGR7] Length = 637 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 1 MQTS-FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M + IG++ LA ++ L +N++N+ T G+ ++ S + + Sbjct: 7 MSSGVLGIGVSGLLAFQRALGVTGNNIANSATEGYSRQRIDLSTQIPQFAGNGYFGSGVQ 66 Query: 60 ASGKEYLSKE 69 SG + + Sbjct: 67 VSGVNRIFDQ 76 >gi|148358812|ref|YP_001250019.1| hypothetical protein LPC_0694 [Legionella pneumophila str. Corby] gi|296106857|ref|YP_003618557.1| flagellar hook-associated protein 1 FlgK [Legionella pneumophila 2300/99 Alcoy] gi|148280585|gb|ABQ54673.1| hypothetical protein LPC_0694 [Legionella pneumophila str. Corby] gi|295648758|gb|ADG24605.1| flagellar hook-associated protein 1 FlgK [Legionella pneumophila 2300/99 Alcoy] Length = 649 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + NI + A ++ L +N++N T G+ ++F+ + I +S Sbjct: 1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVS 60 Query: 60 ASGKEYLSKEVGSFIST 76 + + ST Sbjct: 61 SIYRNVDQFANAQVRST 77 >gi|54297188|ref|YP_123557.1| flagellar hook-associated protein FlgK [Legionella pneumophila str. Paris] gi|53750973|emb|CAH12384.1| flagellar hook-associated protein 1 [Legionella pneumophila str. Paris] Length = 649 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + NI + A ++ L +N++N T G+ ++F+ + I +S Sbjct: 1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVS 60 Query: 60 ASGKEYLSKEVGSFIST 76 + + ST Sbjct: 61 SIYRNVDQFANAQVRST 77 >gi|119775444|ref|YP_928184.1| flagellar hook-associated protein [Shewanella amazonensis SB2B] gi|119767944|gb|ABM00515.1| flagellar hook-associated protein [Shewanella amazonensis SB2B] Length = 638 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 NI LA + +L ++N++N +T G+ + + + S + Sbjct: 6 LNIARTGVLASQAQLGVTSNNIANVNTEGYNRQVATQATHLSQRSGNSFYGTGTYVSSVK 65 Query: 65 YL 66 + Sbjct: 66 RV 67 >gi|126652479|ref|ZP_01724651.1| flagellar hook-associated protein K [Bacillus sp. B14905] gi|126590750|gb|EAZ84865.1| flagellar hook-associated protein K [Bacillus sp. B14905] Length = 530 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 19/41 (46%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM MI Q +N+ +I ++++ + I + Sbjct: 486 SAVSLDEEMTNMITFQQAYNANARMITVVDETLDKIINGMG 526 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 4/73 (5%) Query: 2 QTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 S +GL + L T N+SN +T+G+ +V G ++Q Sbjct: 1 MRSTFMGLEASKRGLFVQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPTY 60 Query: 58 FVASGKEYLSKEV 70 G + + Sbjct: 61 PGHLGTGVEASSI 73 >gi|312962590|ref|ZP_07777080.1| flagellar basal-body rod protein FlgC [Pseudomonas fluorescens WH6] gi|311283170|gb|EFQ61761.1| flagellar basal-body rod protein FlgC [Pseudomonas fluorescens WH6] Length = 147 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F + +++ K+M++ + + Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTA-KTMMQKVLTLG 146 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI + A RL+TVA N++N +TV +R F+ + A +N + Sbjct: 7 FNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQAGQNGGSDSL 64 >gi|52841457|ref|YP_095256.1| flagellar hook-associated protein FlgK [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628568|gb|AAU27309.1| flagellar hook associated protein 1 FlgK [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 649 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + NI + A ++ L +N++N T G+ ++F+ + I +S Sbjct: 1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPITSNRYAGSYIGAGVSVA 60 Query: 60 ASGKEYLSKEVGSFIST 76 + + ST Sbjct: 61 SIYRNVDQFANAQVRST 77 >gi|311694358|gb|ADP97231.1| fFlagellar basal-body rod protein FlgB [marine bacterium HP15] Length = 139 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 20/37 (54%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID 53 +R +A+N++N DT GF+ + F ++ + + Sbjct: 28 KRAEVLANNLANADTPGFKARDLDFQAMMQKAQEQVS 64 >gi|295690745|ref|YP_003594438.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC 21756] gi|295432648|gb|ADG11820.1| flagellar hook-associated protein FlgK [Caulobacter segnis ATCC 21756] Length = 703 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG 46 + + + A + L +DN++N +T G+ + S ++ Sbjct: 4 NSIMSTATSGMTAAQTGLRVTSDNIANVNTNGYVRKTISQSNMLS 48 >gi|167623367|ref|YP_001673661.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis HAW-EB4] gi|167353389|gb|ABZ76002.1| flagellar hook-associated protein FlgK [Shewanella halifaxensis HAW-EB4] Length = 639 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L+ ++N++N +T G+ V S + + N+ ++V+ K Sbjct: 6 MNIARTGVLASQSQLAITSNNIANANTAGYNRQVVSQSALDSQRMGNEFYGAGTYVSDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RVYND 70 >gi|145298488|ref|YP_001141329.1| flagellar basal body protein FlgB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851260|gb|ABO89581.1| flagellar basal body protein FlgB [Aeromonas salmonicida subsp. salmonicida A449] Length = 132 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFIS 75 +R ++ N++N DT GF+ + FSE + ++ ++ + L + + Sbjct: 20 SKRAEVLSSNIANADTPGFKARDINFSEALAQAQHQQGFGMATTSEKHFALQSDAPGLMQ 79 Query: 76 TGTEL 80 L Sbjct: 80 YRNPL 84 >gi|71278001|ref|YP_268219.1| flagellar basal-body rod protein FlgB [Colwellia psychrerythraea 34H] gi|71143741|gb|AAZ24214.1| flagellar basal-body rod protein FlgB [Colwellia psychrerythraea 34H] Length = 132 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 F + L QR +A N++N DT G++ + F++ + N +S Sbjct: 6 DKGFQLHTQGMLIRSQRAEVIASNIANADTPGYKAKGLDFNQALAQAANKQKMGMS 61 >gi|23092312|gb|AAN08637.1| FlgB [Aeromonas hydrophila] Length = 132 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A +R ++ N++N DT GF+ + FS+ + ++ ++ + L + Sbjct: 15 ALSVRSKRAEVLSSNIANADTPGFKARDINFSQALEEAQHQQGFGLATTSEKHFALQSDA 74 Query: 71 GSFISTGTEL 80 L Sbjct: 75 PGLTQYRNPL 84 >gi|256830170|ref|YP_003158898.1| flagellar hook-associated protein FlgK [Desulfomicrobium baculatum DSM 4028] gi|256579346|gb|ACU90482.1| flagellar hook-associated protein FlgK [Desulfomicrobium baculatum DSM 4028] Length = 697 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 FNIG + A + + V +N+SN +T G+ V+F + + A+ Sbjct: 8 FNIGKQSLFANQAAIEVVGNNISNANTEGYSRQAVRFEDGYYISYSPGQLGTGVNAA 64 Score = 35.4 bits (81), Expect = 7.5, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 S N EM +I + + LI +SMLE + Sbjct: 657 SGVNLDEEMTNLIKFQHAYTAAAKLI-TTAESMLEVL 692 >gi|261419417|ref|YP_003253099.1| flagellar basal body rod protein FlgC [Geobacillus sp. Y412MC61] gi|319766232|ref|YP_004131733.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC52] gi|261375874|gb|ACX78617.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC61] gi|317111098|gb|ADU93590.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y412MC52] Length = 150 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S NI +A A R+ +A N++N DT Sbjct: 5 QSLNISASALTAQRLRMDVIASNIANVDTT 34 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM +I T+ + + T+++ ++ +++A+ Sbjct: 105 GYVRLPNVDPLKEMVDLIGATRSYEANVTVLNASKGMLMKAL 146 >gi|169826733|ref|YP_001696891.1| flagellar hook-associated protein FlgK [Lysinibacillus sphaericus C3-41] gi|168991221|gb|ACA38761.1| Flagellar hook-associated protein 1 (HAP1) [Lysinibacillus sphaericus C3-41] Length = 530 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 19/41 (46%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM MI Q +N+ +I ++++ + I + Sbjct: 486 SAVSLDEEMTNMITFQQAYNANARMITVVDETLDKIINGMG 526 Score = 42.0 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 7/78 (8%) Query: 2 QTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 S +GL + L T N+SN +T+G+ +V G ++Q Sbjct: 1 MRSTFMGLEASKRGLFVQQTALYTTGHNISNANTLGYSRQRVNMQATPGFPTAGLNQPTY 60 Query: 58 FVASGKEYLSKEVGSFIS 75 G E GS Sbjct: 61 PGHLGTGV---EAGSIQR 75 >gi|313903612|ref|ZP_07837002.1| flagellar hook-associated protein FlgK [Thermaerobacter subterraneus DSM 13965] gi|313466165|gb|EFR61689.1| flagellar hook-associated protein FlgK [Thermaerobacter subterraneus DSM 13965] Length = 533 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 3/65 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A ++ L N++N +T G+ + + + V +G+ +V Sbjct: 14 GLWAQQRALDVTGHNIANANTPGYSRQVAR---LAPTPAYAPPSRAMAVEAGQVGTGVQV 70 Query: 71 GSFIS 75 Sbjct: 71 AGIQR 75 >gi|296330251|ref|ZP_06872732.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676144|ref|YP_003867816.1| flagellar hook-filament junction [Bacillus subtilis subsp. spizizenii str. W23] gi|296152519|gb|EFG93387.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414388|gb|ADM39507.1| flagellar hook-filament junction [Bacillus subtilis subsp. spizizenii str. W23] Length = 507 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASGKEYLSK 68 A A + LST A+N++N +T G+ +V + A+ + ++ + +G + S Sbjct: 14 ALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAGQMGTGVQGKSV 73 Query: 69 E 69 E Sbjct: 74 E 74 Score = 42.3 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 7/98 (7%) Query: 146 GEISQKGKVIATMGLYS-VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 G+I+ GK + + Y+ + G +E + ++ N + + S Sbjct: 412 GKITINGKETSVLDYYAGLIGELGIKAQEANRLASNTETQLNDADINRQ------QMSAV 465 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI +N+ ++ ++ + + I + Sbjct: 466 SLDEEMTNMIQFQHAYNAAARMVTLQDEILDKVINGMG 503 >gi|224825170|ref|ZP_03698276.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002] gi|224602841|gb|EEG09018.1| flagellar hook-associated protein FlgK [Lutiella nitroferrum 2002] Length = 598 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 1 MQTS-FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKIS 57 M TS F+IG++ A + L+ + N+SN +T G+ + + + I Q + Sbjct: 1 MGTSIFSIGVSGLNAAQGALTVTSHNISNVNTAGYTRQVTQQAARYPQSASYGFIGQGVD 60 Query: 58 FVASGKEYLSK 68 + Y Sbjct: 61 LTHVNRVYDDY 71 >gi|225159033|ref|ZP_03725343.1| flagellar basal-body rod protein FlgC [Opitutaceae bacterium TAV2] gi|224802412|gb|EEG20674.1| flagellar basal-body rod protein FlgC [Opitutaceae bacterium TAV2] Length = 140 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 21/44 (47%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G + N N YEM +I ++ + + ++ + + L+A+ Sbjct: 93 ASGMVTMPNVNLAYEMVDLITASRTYEANLQVVKNSRQMALKAL 136 Score = 40.8 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 7/69 (10%) Query: 10 AAQLALEQRLSTVADNMSNTDTV-G-----FRTIKVKFSEVVGAIKNDIDQ-KISFVASG 62 +A A + RL +A N++N T G ++ V F + ID + V Sbjct: 12 SALNAQKTRLDIIAQNIANAHTTRGPNGLPYQRQMVSFESELTNKLGQIDGVPLRSVRVS 71 Query: 63 KEYLSKEVG 71 G Sbjct: 72 SVSGDTTAG 80 >gi|295096227|emb|CBK85317.1| flagellar basal-body rod protein FlgC [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 134 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ + S E + + G+++ Sbjct: 36 GPDGQPYRAKQVVFQVD-AAPGAATGGVKVADVVESQAPDKLVYEPGNPLADASGYVKMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 95 NVDVVGEMVNSMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F+I +A A +RL+ A N++N G +R +V F Sbjct: 4 LNIFDIAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQ 50 >gi|326796599|ref|YP_004314419.1| flagellar basal-body rod protein FlgC [Marinomonas mediterranea MMB-1] gi|326547363|gb|ADZ92583.1| flagellar basal-body rod protein FlgC [Marinomonas mediterranea MMB-1] Length = 149 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 18/36 (50%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM M+ ++ F + +++ + M + + Sbjct: 109 NVNPVEEMADMMSASRSFQTNVEVMNSAKSMMQKML 144 Score = 39.6 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 F I +A A RL+TVA N++N D+V +R K F+E++ + + Sbjct: 4 NNIFAISGSAMSAQTIRLNTVASNIANVDSVASSVDETYRARKPVFAEMMEESMRERGWR 63 Query: 56 ISFVASGKEYLSKEVGSFISTGTEL 80 + + +V + + L Sbjct: 64 DVSDDDLQSGVGVQVAGIVESDAPL 88 >gi|291486094|dbj|BAI87169.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. natto BEST195] Length = 507 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASGKEYLSK 68 A A + LST A+N++N +T G+ +V + A+ + ++ + +G + S Sbjct: 14 ALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAGQMGTGVQGKSV 73 Query: 69 E 69 E Sbjct: 74 E 74 Score = 42.3 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 7/98 (7%) Query: 146 GEISQKGKVIATMGLYS-VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 G+I+ GK + + Y+ + G +E + ++ N + + S Sbjct: 412 GKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQ------QMSAV 465 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI +N+ ++ ++ + + I + Sbjct: 466 SLDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGMG 503 >gi|321313088|ref|YP_004205375.1| flagellar hook-associated protein FlgK [Bacillus subtilis BSn5] gi|320019362|gb|ADV94348.1| flagellar hook-associated protein FlgK [Bacillus subtilis BSn5] Length = 507 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASGKEYLSK 68 A A + LST A+N++N +T G+ +V + A+ + ++ + +G + S Sbjct: 14 ALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAGQMGTGVQGKSV 73 Query: 69 E 69 E Sbjct: 74 E 74 Score = 42.3 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 7/98 (7%) Query: 146 GEISQKGKVIATMGLYS-VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 G+I+ GK + + Y+ + G +E + ++ N + + S Sbjct: 412 GKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQ------QMSAV 465 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI +N+ ++ ++ + + I + Sbjct: 466 SLDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGMG 503 >gi|117923582|ref|YP_864199.1| flagellar basal-body rod protein FlgB [Magnetococcus sp. MC-1] gi|117607338|gb|ABK42793.1| flagellar basal-body rod protein FlgB [Magnetococcus sp. MC-1] Length = 137 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 19/31 (61%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVG 46 ++R +A N++N DT G++ ++ F E + Sbjct: 22 QRRQDIIAANIANADTPGYKARRLSFEEELA 52 >gi|323527715|ref|YP_004229868.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1001] gi|323384717|gb|ADX56808.1| flagellar basal-body rod protein FlgC [Burkholderia sp. CCGE1001] Length = 141 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P P + G++ N + + EM MI ++ + + ++ + ML+ + Sbjct: 86 DPGNPAANAD------GYVTLPNVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLT 138 Score = 43.5 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F + +A A QRL+ A N++N T G +R +V F+ Sbjct: 5 MNIFGVAGSAMSAQSQRLNVTASNLANADSTTGPDGQPYRAKQVVFA 51 >gi|15642858|ref|NP_227899.1| flagellar hook-associated protein 1 [Thermotoga maritima MSB8] gi|4980572|gb|AAD35177.1|AE001695_3 flagellar hook-associated protein 1 [Thermotoga maritima MSB8] Length = 858 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 16/38 (42%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIK 38 M N L A + ++ V N++N T G+ + Sbjct: 6 MFGILNTALTGIHAHKLAMNIVGHNIANASTPGYSRQR 43 Score = 41.6 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI F++ +I ++ + I + Sbjct: 820 VSLDEEMANMIEYQHAFSAAAKVITAVDQMIQTVINMVG 858 >gi|269836584|ref|YP_003318812.1| flagellar basal-body rod protein FlgC [Sphaerobacter thermophilus DSM 20745] gi|269785847|gb|ACZ37990.1| flagellar basal-body rod protein FlgC [Sphaerobacter thermophilus DSM 20745] Length = 154 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 6/81 (7%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKISFVA 60 + ++ A R+ +A N++N DT G +R +V F+ V V Sbjct: 9 VSMSGLTAQRLRMDVIASNIANVDTTRTPEGGPYRRRQVVFTAVPATDSRPSAGGFQRVL 68 Query: 61 SGKEYLSKEVGSFISTGTELD 81 + + S T D Sbjct: 69 APVDPQSNAGQGVAVTAIRTD 89 Score = 35.8 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 4/35 (11%), Positives = 17/35 (48%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + EM ++ ++ + + T+++ + A+ Sbjct: 116 DVITEMTDLLAASRAYEANVTVLNAVKAMASRALT 150 >gi|307699881|ref|ZP_07636932.1| putative flagellar hook-associated protein FlgK [Mobiluncus mulieris FB024-16] gi|307614919|gb|EFN94137.1| putative flagellar hook-associated protein FlgK [Mobiluncus mulieris FB024-16] Length = 976 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 8/85 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +S N GL A ++ + N+ N +T G+ +V+ + + I G Sbjct: 6 SSLNAGLTGLYAAQRLIEVSGQNIINQNTPGYTRQRVEQKALGIGSEPSIFSGSVPQGGG 65 Query: 63 KEYLS-KEVGSF-------ISTGTE 79 E + +G F + TG Sbjct: 66 VEITGERRLGDFFLDAKLRMETGRA 90 >gi|16080594|ref|NP_391421.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. 168] gi|221311492|ref|ZP_03593339.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. 168] gi|221315819|ref|ZP_03597624.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320734|ref|ZP_03602028.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. JH642] gi|221325019|ref|ZP_03606313.1| flagellar hook-associated protein FlgK [Bacillus subtilis subsp. subtilis str. SMY] gi|2828498|sp|P39810|FLGK_BACSU RecName: Full=Flagellar hook-associated protein 1; Short=HAP1 gi|1762338|gb|AAC44946.1| flagellar-hook associated protein 1 (HAP1) [Bacillus subtilis subsp. subtilis str. 168] gi|2636067|emb|CAB15558.1| flagellar hook-filament junction [Bacillus subtilis subsp. subtilis str. 168] Length = 507 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASGKEYLSK 68 A A + LST A+N++N +T G+ +V + A+ + ++ + +G + S Sbjct: 14 ALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAGQMGTGVQGKSV 73 Query: 69 E 69 E Sbjct: 74 E 74 Score = 42.3 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 7/98 (7%) Query: 146 GEISQKGKVIATMGLYS-VDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNA 204 G+I+ GK + + Y+ + G +E + ++ N + + S Sbjct: 412 GKITINGKETSVLDYYAGLIGELGIEAQEANRLASNTETQLNDADINRQ------QMSAV 465 Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI +N+ ++ ++ + + I + Sbjct: 466 SLDEEMTNMIQFQHAYNAAARMVTLQDELLDKVINGMG 503 >gi|302382561|ref|YP_003818384.1| flagellar hook-associated protein FlgK [Brevundimonas subvibrioides ATCC 15264] gi|302193189|gb|ADL00761.1| flagellar hook-associated protein FlgK [Brevundimonas subvibrioides ATCC 15264] Length = 707 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 23/43 (53%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV 44 + NI + A +Q+L V+DN+SN +T G+ + + + Sbjct: 4 NSILNIANSGLQAAQQQLRVVSDNVSNVNTPGYVRKIAEQTSL 46 >gi|219681697|ref|YP_002468083.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471393|ref|ZP_05635392.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624540|gb|ACL30695.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 136 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N + EM I + + + ++ + +++ + Sbjct: 91 GYILASNVNPITEMVNNIAAARSYQANIEVLKTAKSMIMKTLT 133 Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 21/34 (61%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR 35 FNI +A +A Q+L+ +A N++N D+ ++ Sbjct: 4 LNIFNIAGSAMIAQSQKLNVIASNLANMDSTIYK 37 >gi|329895981|ref|ZP_08271239.1| Flagellar hook-associated protein flgK [gamma proteobacterium IMCC3088] gi|328922062|gb|EGG29425.1| Flagellar hook-associated protein flgK [gamma proteobacterium IMCC3088] Length = 1003 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M +IG +A Q ++T ++N+SN +T G+ +VK +E + + Sbjct: 1 MSDFLSIGASAINVYRQAIATTSNNISNVNTEGYSKQEVKITESYPTQIANYYLGTGAFT 60 Query: 59 VASGKEYLSKEVGSFISTGTELD 81 + + Y S + ++LD Sbjct: 61 GSVQRSYDEFVERSLRDSASDLD 83 >gi|15644116|ref|NP_229165.1| flagellar basal-body rod protein FlgB [Thermotoga maritima MSB8] gi|148270548|ref|YP_001245008.1| flagellar basal-body rod protein FlgB [Thermotoga petrophila RKU-1] gi|4981924|gb|AAD36434.1|AE001790_6 flagellar basal-body rod protein FlgB [Thermotoga maritima MSB8] gi|147736092|gb|ABQ47432.1| flagellar basal-body rod protein FlgB [Thermotoga petrophila RKU-1] Length = 127 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 17/120 (14%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVG--------AIKNDID 53 T+F A R + + N++N T G++ V F E++ + N+ Sbjct: 3 NTNFYTLKQAMDVALLRQNVHSLNIANVSTPGYKRKYVAFEELLKESEMKLKLSKTNEKH 62 Query: 54 QKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALES-PRGIIL---TRDGRFKVT 109 S L + + G +D + ++ G+ TR + Sbjct: 63 LIGSKNVVEPRVLVDNTTTMRNDGNNVDI-----DYEMVQLVKNGLRYQVLTRLMSLNID 117 >gi|15616944|ref|NP_240157.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682252|ref|YP_002468636.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11386805|sp|P57420|FLGC_BUCAI RecName: Full=Flagellar basal-body rod protein flgC gi|25298910|pir||C84969 flagellar basal-body rod protein flgC [imported] - Buchnera sp. (strain APS) gi|10039009|dbj|BAB13043.1| flagellar basal-body rod protein flgC [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621985|gb|ACL30141.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086076|gb|ADP66158.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086647|gb|ADP66728.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087233|gb|ADP67313.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087752|gb|ADP67831.1| flagellar basal-body rod protein FlgC [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 136 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 20/43 (46%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ SN N + EM I + + + ++ + +++ + Sbjct: 91 GYILASNVNPITEMVNNIAAARSYQANIEVLKTAKSMIMKTLT 133 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 21/34 (61%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFR 35 FNI +A +A Q+L+ +A N++N D+ ++ Sbjct: 4 LNIFNIAGSAMIAQSQKLNVIASNLANMDSTIYK 37 >gi|187925763|ref|YP_001897405.1| flagellar basal body rod protein FlgC [Burkholderia phytofirmans PsJN] gi|187716957|gb|ACD18181.1| flagellar basal-body rod protein FlgC [Burkholderia phytofirmans PsJN] Length = 141 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P P + G++ N + + EM MI ++ + + ++ + ML+ + Sbjct: 86 DPGNPAANSD------GYVTLPNVDPVQEMVNMISASRSYQANVETLNTAKTLMLKTLT 138 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F + +A A QRL+ A N++N T G ++ +V F+ Sbjct: 5 MNIFGVAGSAMSAQSQRLNVTASNLANADSTTGPDGQPYKAKQVVFA 51 >gi|325982373|ref|YP_004294775.1| flagellar basal-body rod protein FlgC [Nitrosomonas sp. AL212] gi|325531892|gb|ADZ26613.1| flagellar basal-body rod protein FlgC [Nitrosomonas sp. AL212] Length = 133 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 21/44 (47%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM M+ ++ + + +++ + + + + Sbjct: 87 SGYVTMPNVNVVDEMVNMMSASRSYQNSVDMMNTTKSLLQKTLT 130 Score = 41.6 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNT----DTVG--FRTIKVKFSEVVGAIKNDIDQKI 56 F I +A A QRL+ VA N+SN + G +R +V FS + K+ Sbjct: 4 NVFGIASSAMSAQSQRLNVVASNLSNADSVTSSTGEPYRGRQVVFSTLRADANGAAGVKV 63 Query: 57 SFV 59 + V Sbjct: 64 AGV 66 >gi|319405399|emb|CBI79018.1| Flagellar basal-body rod protein flgC [Bartonella sp. AR 15-3] Length = 138 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKNDIDQKISF 58 I A RL +A+N++N ++ G ++ V F ++ + ++ Sbjct: 10 QIATTGLSAQSTRLRVIAENLANVNSTGKSAGARPYQRKTVSFEAILNPYLDAQGVHVTR 69 Query: 59 VASGK 63 +++ K Sbjct: 70 ISTDK 74 Score = 41.6 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N NS+ EM M + + + +I + + + I Sbjct: 92 GYVKYPNVNSIIEMADMREANRSYEANLQVIRQARDLVSQTI 133 >gi|289523577|ref|ZP_06440431.1| flagellar basal-body rod protein FlgB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503269|gb|EFD24433.1| flagellar basal-body rod protein FlgB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 135 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 18/33 (54%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 L +R ++ N++NT+T G+ +V F + Sbjct: 12 GMKGLSKRFEAISQNVANTNTPGYARSEVTFED 44 >gi|229827759|ref|ZP_04453828.1| hypothetical protein GCWU000182_03151 [Abiotrophia defectiva ATCC 49176] gi|229787958|gb|EEP24072.1| hypothetical protein GCWU000182_03151 [Abiotrophia defectiva ATCC 49176] Length = 633 Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKV 39 TSF +G++ A + L+ A N++N DT G+ +V Sbjct: 4 MTSFGVGVSGLNAAQNSLNATAHNITNADTKGYVRQQV 41 Score = 35.8 bits (82), Expect = 5.0, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 +S E+ MI Q FN+ + I ++ + + + S Sbjct: 594 VSSDEELTHMIKFQQAFNAASRYITVIDEMLEHVVTRLGS 633 >gi|313901523|ref|ZP_07834970.1| flagellar basal-body rod protein FlgC [Thermaerobacter subterraneus DSM 13965] gi|313468218|gb|EFR63685.1| flagellar basal-body rod protein FlgC [Thermaerobacter subterraneus DSM 13965] Length = 188 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 M ++F+I + A RL +A N++N D+ G +R + F E Sbjct: 5 MFSTFDIAASGMTAQRLRLDLIASNLANVDSTRTPQGGPYRRLVPVFEE 53 Score = 39.3 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 4/24 (16%), Positives = 12/24 (50%) Query: 203 NANSMYEMGQMIHLTQKFNSITTL 226 N + + EM ++ T+ + + + Sbjct: 148 NVDPLAEMVNLLAATRAYEANVAV 171 >gi|37525847|ref|NP_929191.1| flagellar hook-associated protein FlgK [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785276|emb|CAE14217.1| Flagellar hook-associated protein 1 (HAP1) [Photorhabdus luminescens subsp. laumondii TTO1] gi|37681983|gb|AAQ97871.1| FlgK [Photorhabdus luminescens] Length = 549 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M +S NI ++ A + L TV++N++N+ G+ V + F+ Sbjct: 1 MSSSLINIAMSGLQAAQIALGTVSNNLANSKVPGYNRQST-----VVNQNGGTMTSVGFI 55 Query: 60 ASGKEYLS 67 +G S Sbjct: 56 GNGVTVTS 63 >gi|238919257|ref|YP_002932772.1| flagellar basal-body rod protein FlgC, [Edwardsiella ictaluri 93-146] gi|238868826|gb|ACR68537.1| flagellar basal-body rod protein FlgC, putative [Edwardsiella ictaluri 93-146] Length = 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM I ++ + + +++ + M++ + Sbjct: 80 PGNPLADAK------GYVRMPNVDVVSEMVNSIAASRSYQANVEVLNTTKSLMMKTLT 131 >gi|330946986|gb|EGH47794.1| flagellar hook protein FlgE [Pseudomonas syringae pv. pisi str. 1704B] Length = 80 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 1/68 (1%) Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 RE + P G + LE+SN + E+ +I + + I Sbjct: 12 RETFASGVPVSGAPQSGTLGYITGQ-ALEESNVDLTMELVNLIKAQSNYQANAKTISTQS 70 Query: 232 KSMLEAIR 239 M I+ Sbjct: 71 TIMQTTIQ 78 >gi|229592132|ref|YP_002874251.1| flagellar basal body rod protein FlgC [Pseudomonas fluorescens SBW25] gi|229363998|emb|CAY51548.1| putative flagellar basal-body rod protein [Pseudomonas fluorescens SBW25] Length = 147 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F + +++ K+M++ + + Sbjct: 108 NVNVVEEMADMISASRSFQTNAEMMNTA-KTMMQKVLTLG 146 Score = 42.7 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 FNI + A RL+TVA N++N +TV +R F+ + ++ + Sbjct: 7 FNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGGSDSL 64 >gi|294635608|ref|ZP_06714085.1| flagellar basal-body rod protein FlgC [Edwardsiella tarda ATCC 23685] gi|291091060|gb|EFE23621.1| flagellar basal-body rod protein FlgC [Edwardsiella tarda ATCC 23685] Length = 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM I ++ + + +++ + M++ + Sbjct: 80 PGNPLADAK------GYVRMPNVDVVGEMVNSIAASRSYQANVEVLNTTKSLMMKTLT 131 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 + F+I +A A +R++ A N++N G +R +V F +K ++ Sbjct: 4 LSIFDISGSALTAQSKRMNVAASNLANADSVTGPDGEPYRAKQVVFQ-----VKPGAGEE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 I V + + G L Sbjct: 59 IGGVQVSQVVDDPSPDRLVYQPGNPL 84 >gi|119503650|ref|ZP_01625733.1| flagellar hook-associated protein [marine gamma proteobacterium HTCC2080] gi|119460712|gb|EAW41804.1| flagellar hook-associated protein [marine gamma proteobacterium HTCC2080] Length = 556 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M + IG A AL++ +ST N++N +T G+ V S D ++ Sbjct: 1 MANTLGIGTTALSALQRAISTTGQNIANVNTEGYSRQSVSLSARPAQ-----DIGAGYLG 55 Query: 61 SGKEYLSKE 69 SG + S + Sbjct: 56 SGVQVTSID 64 >gi|32490788|ref|NP_871042.1| hypothetical protein WGLp039 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165994|dbj|BAC24185.1| flgC [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 133 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G+++ SN N + EM I ++ + + +I+ +L+ + Sbjct: 78 DPGNPLADSK------GYVKSSNVNMISEMINTISSSRSYQANVEVINTARSMILKTLT 130 >gi|85712251|ref|ZP_01043302.1| Flagellar basal body protein [Idiomarina baltica OS145] gi|85693878|gb|EAQ31825.1| Flagellar basal body protein [Idiomarina baltica OS145] Length = 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 20/38 (52%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ 54 QR +A+N++N DT G++ + F + + + I Sbjct: 21 QRAELIANNIANADTPGYKAKGLDFQQALAQAQRGIQS 58 >gi|271500072|ref|YP_003333097.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech586] gi|270343627|gb|ACZ76392.1| flagellar hook-associated protein FlgK [Dickeya dadantii Ech586] Length = 638 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N G++ A + LSTV++N+SN G+ + A N ++ Sbjct: 1 MSNLINTGMSGLSAAQAALSTVSNNISNQAVAGYSRQNA-----LLAQNNGTTTSAGYIG 55 Query: 61 SGKEYLS 67 +G +S Sbjct: 56 NGVTVVS 62 >gi|253681456|ref|ZP_04862253.1| flagellar basal-body rod protein FlgB [Clostridium botulinum D str. 1873] gi|253561168|gb|EES90620.1| flagellar basal-body rod protein FlgB [Clostridium botulinum D str. 1873] Length = 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 27/47 (57%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 + A +R + + +N++N +T G++ V F + + K+ +D KI+ Sbjct: 19 SLKATAKRKNVINNNIANFNTKGYKRSYVTFEDSLKESKDKLDLKIT 65 >gi|222112279|ref|YP_002554543.1| flagellar hook-associated protein flgk [Acidovorax ebreus TPSY] gi|221731723|gb|ACM34543.1| flagellar hook-associated protein FlgK [Acidovorax ebreus TPSY] Length = 672 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + N+G A LA + L T N++N T G+ V V G ++ + Sbjct: 1 MSLLNVGARALLANQVALQTTGHNIANVSTAGYSRQNVAMETVQGQF-----TGSGYIGN 55 Query: 62 GKEYLS 67 G + + Sbjct: 56 GVQVAT 61 >gi|269138580|ref|YP_003295280.1| flagellar basal body rod protein [Edwardsiella tarda EIB202] gi|267984240|gb|ACY84069.1| flagellar basal body rod protein [Edwardsiella tarda EIB202] gi|304558590|gb|ADM41254.1| Flagellar basal-body rod protein FlgC [Edwardsiella tarda FL6-60] Length = 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G++ N + + EM I ++ + + +++ + M++ + Sbjct: 80 PGNPLADAK------GYVRMPNVDVVGEMVNSIAASRSYQANVEVLNTTKSLMMKTLT 131 Score = 37.7 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 + F+I +A A +R++ A N++N G +R +V F +K ++ Sbjct: 4 LSIFDISGSALTAQSKRMNVAASNLANADSVTGPDGEPYRAKQVVFQ-----VKPGAGEE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 I V + + G L Sbjct: 59 IGGVQVSQVVDDPAPDRLVYQPGNPL 84 >gi|254994393|ref|ZP_05276583.1| flagellar hook protein FlgE [Listeria monocytogenes FSL J2-064] Length = 62 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + ++ +G + LE SN + E ++ F T +I + M + + Sbjct: 1 AVYGVAGQNGAG-GISGSSLEGSNVDLSREFVNLMTYQSGFQGNTKVIRVADDVMKQIVN 59 >gi|238755326|ref|ZP_04616669.1| Flagellar basal-body rod protein flgC [Yersinia ruckeri ATCC 29473] gi|238706462|gb|EEP98836.1| Flagellar basal-body rod protein flgC [Yersinia ruckeri ATCC 29473] gi|253317693|gb|ACT22782.1| flagellar basal body rod protein FlgC [Yersinia ruckeri] Length = 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 19/117 (16%) Query: 123 VLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIP 182 V P + K +F V +G G +A + V + P Sbjct: 34 VTGPDGQPYR--AKQVVFQVANQGAQETGGVRVAQI--VEDTSPDRLVFQ---------P 80 Query: 183 PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 PL D G++ N + + EM I ++ + + +++ + ML+ + Sbjct: 81 GNPLADAK------GYVRMPNVDVVGEMVNTISASRSYQANVEVLNTTKSMMLKTLT 131 Score = 38.9 bits (90), Expect = 0.64, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QR++ A NM+N G +R +V F + N Q+ Sbjct: 4 LNIFDIAGSALSAQSQRMNVSASNMANADSVTGPDGQPYRAKQVVFQ-----VANQGAQE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V + + G L Sbjct: 59 TGGVRVAQIVEDTSPDRLVFQPGNPL 84 >gi|297520377|ref|ZP_06938763.1| flagellar basal body rod protein FlgC [Escherichia coli OP50] Length = 103 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ + S E + + +G+++ Sbjct: 5 GPDGQPYRAKQVVFQVN-AAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMP 63 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 64 NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 100 >gi|95929847|ref|ZP_01312588.1| flagellar basal-body rod protein FlgC [Desulfuromonas acetoxidans DSM 684] gi|95134143|gb|EAT15801.1| flagellar basal-body rod protein FlgC [Desulfuromonas acetoxidans DSM 684] Length = 143 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 8/75 (10%) Query: 1 MQ--TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDI 52 M TS NI +A A RL T++ NM+N +T G +R V F + + + Sbjct: 1 MDIFTSLNISSSALKAQRIRLDTISSNMANAETTRTPEGGPYRRKMVVFEPAQVSFADHL 60 Query: 53 DQKISFVASGKEYLS 67 K +G + Sbjct: 61 SAKEKKALNGVQVSQ 75 Score = 43.5 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N + + E M+ T+ + + T I ++ L+A+ Sbjct: 97 QGYVALPNIDLLKETTDMMLATRAYEANITTIKSAKRMALKAL 139 >gi|320354701|ref|YP_004196040.1| hypothetical protein Despr_2613 [Desulfobulbus propionicus DSM 2032] gi|320123203|gb|ADW18749.1| protein of unknown function DUF1078 domain protein [Desulfobulbus propionicus DSM 2032] Length = 117 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M + L+ A ++ + A N++N +T G+R +V S V ++ Sbjct: 1 MISGIQSALSGAQAFSAKIESNAHNIANLNTEGYRKSRVVLSAGVAQSVQATVGRV 56 >gi|83589598|ref|YP_429607.1| flagellar hook-associated protein FlgK [Moorella thermoacetica ATCC 39073] gi|83572512|gb|ABC19064.1| Flagellar hook-associated protein [Moorella thermoacetica ATCC 39073] Length = 486 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 19/37 (51%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 FN L A ++ + T + N++N +T G+ +V Sbjct: 7 GFNTALRGMQAQQRGIYTTSHNIANANTEGYTRQQVV 43 Score = 42.7 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM M+ + + + +I + + + I + Sbjct: 443 SGVSLDEEMANMLQYLRAYEASARMITTLDSMLDKIINGMG 483 >gi|120597303|ref|YP_961877.1| flagellar basal-body rod protein FlgC [Shewanella sp. W3-18-1] gi|146294552|ref|YP_001184976.1| flagellar basal-body rod protein FlgC [Shewanella putrefaciens CN-32] gi|120557396|gb|ABM23323.1| flagellar basal-body rod protein FlgC [Shewanella sp. W3-18-1] gi|145566242|gb|ABP77177.1| flagellar basal-body rod protein FlgC [Shewanella putrefaciens CN-32] Length = 138 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +G++ SN N++ EM M+ ++ F + +++ +SM + + + Sbjct: 91 QGYVAYSNVNTIEEMADMMAASRSFETSVEVMNRA-RSMQQGLLQLG 136 Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 17/84 (20%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTD----TV--GFRTIKVKFSEVVGAIKNDIDQKISF 58 + I A A RL+TVA N++N T +R +K F+ + + + Sbjct: 7 YQIAGAGMNAQTIRLNTVASNLANAGAAAETPESAYRALKPVFATIYDSTQQ-------- 58 Query: 59 VASGKEYLSKEVGSFISTGTELDF 82 G S EV + LD Sbjct: 59 ---GAIGASIEVSDIVQADAPLDM 79 >gi|46581297|ref|YP_012105.1| flagellar basal-body rod protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450718|gb|AAS97365.1| flagellar basal-body rod protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234961|gb|ADP87815.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris RCH1] Length = 125 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%) Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 +E SN ++ EM M+ + + I ++ Sbjct: 82 VEGSNTDTAREMVSMMETQRAHEANVASIRAHDDM 116 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G AA A L A+N++N +T GFR + ++ V G+ Sbjct: 5 TGWAALDAFGIGLGVTANNIANVNTDGFRASQTRYE---------TGPGGEGVRLGEIRE 55 Query: 67 SKEVGSFIS 75 S G Sbjct: 56 STTPGPLHE 64 >gi|303240172|ref|ZP_07326692.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus CD2] gi|302592263|gb|EFL61991.1| flagellar hook-associated protein FlgK [Acetivibrio cellulolyticus CD2] Length = 689 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 SF I + E+ LS N++N +T G+ + S +N + Sbjct: 7 SFEIARSGMTVNERALSVTGHNIANVNTAGYVRQQAIISSGPMQNENTYQLGLG 60 >gi|255523706|ref|ZP_05390672.1| flagellar basal-body rod protein FlgC [Clostridium carboxidivorans P7] gi|296186710|ref|ZP_06855112.1| flagellar basal-body rod protein FlgC [Clostridium carboxidivorans P7] gi|255512575|gb|EET88849.1| flagellar basal-body rod protein FlgC [Clostridium carboxidivorans P7] gi|296048747|gb|EFG88179.1| flagellar basal-body rod protein FlgC [Clostridium carboxidivorans P7] Length = 144 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Query: 1 MQTSFN---IGLAAQLALEQRLSTVADNMSNTDTV-G-----FRTIKVKFSEVVGAIKND 51 M +FN I + A R+ T+A N++N DT G +R F E + N Sbjct: 1 MIKAFNNLRISASGLSAERLRMDTIASNIANVDTTRGANGQPYRRKIAVFQENLNTQLNK 60 Query: 52 IDQKISFVASGKEYL 66 + K G + + Sbjct: 61 QNGKYEQTPLGVKAV 75 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +G++ N N + EM M+ T+ + + I +EK+M I Sbjct: 97 AQGYVSKPNVNVLNEMADMMVATRAYEANIDAI-SSEKTMFSKALEIG 143 >gi|330720177|gb|EGG98566.1| Flagellar basal-body rod protein FlgC [gamma proteobacterium IMCC2047] Length = 150 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM MI ++ + + +++ ++ M + Sbjct: 111 NVDVVTEMADMISASRAYQTNVEIMNTAKQMMQRVLT 147 >gi|310641540|ref|YP_003946298.1| flagellar basal-body rod protein flgb [Paenibacillus polymyxa SC2] gi|309246490|gb|ADO56057.1| Flagellar basal-body rod protein FlgB [Paenibacillus polymyxa SC2] Length = 135 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A A R +ADN+SN DT F+ +V F E++ + + + + + Sbjct: 14 AGVQAANTRQRVMADNISNADTPYFKRSEVSFEELLQQQMDGDVTPLRGKVTNSRH--FQ 71 Query: 70 VGSFIS 75 +G S Sbjct: 72 IGPVNS 77 >gi|319787124|ref|YP_004146599.1| flagellar basal-body rod protein FlgB [Pseudoxanthomonas suwonensis 11-1] gi|317465636|gb|ADV27368.1| flagellar basal-body rod protein FlgB [Pseudoxanthomonas suwonensis 11-1] Length = 139 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 1 MQT--SFNIGL--AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M S +G+ A EQR+ +A N++N DT G++ + F+ + A + Sbjct: 1 MLNPISSYMGVHADALPLREQRMKLIASNLANADTPGYKAQDLDFNAALDAATRSRTGGV 60 Query: 57 S 57 + Sbjct: 61 A 61 >gi|91794997|ref|YP_564648.1| flagellar basal-body rod protein FlgC [Shewanella denitrificans OS217] gi|91716999|gb|ABE56925.1| flagellar basal-body rod protein FlgC [Shewanella denitrificans OS217] Length = 139 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +G++ SN N++ EM M+ ++ F + +++ +SM + + + Sbjct: 92 QGYVAYSNVNTVDEMADMMAASRSFETSVEIMNRA-RSMQQGLLQLG 137 Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 16/84 (19%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISF 58 + I A A RL+TVA N++N T +R +K F+ V + + S Sbjct: 7 YQIAGAGMNAQTIRLNTVASNIANAGTAAETPEEAYRALKPVFATVYEQFQQNATSGASV 66 Query: 59 VASGKEYLSKEVGSFISTGTELDF 82 EV + T LD Sbjct: 67 ----------EVMDIVQTSAPLDL 80 >gi|217076647|ref|YP_002334363.1| flagellar hook-associated protein 1 [Thermosipho africanus TCF52B] gi|217036500|gb|ACJ75022.1| flagellar hook-associated protein 1 [Thermosipho africanus TCF52B] Length = 847 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 22/61 (36%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 + N GL + ++ V+ N++N +T GF + + Q + G Sbjct: 9 ALNTGLLGVYTSKLAMNVVSHNIANANTPGFSRQVPIIRTMPPIPATTLTQPSIPLQIGT 68 Query: 64 E 64 Sbjct: 69 G 69 Score = 37.3 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 7/39 (17%), Positives = 15/39 (38%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI FN+ ++ ++ + I + Sbjct: 805 VSLDEEMANMIKFQHAFNASARVMTAVDEMIGRVIDRLG 843 >gi|291277450|ref|YP_003517222.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] gi|290964644|emb|CBG40498.1| flagellar basal-body rod protein [Helicobacter mustelae 12198] Length = 164 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 15/39 (38%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 N N + EM +I T+ + + + AI + Sbjct: 124 NVNPVVEMADLIEATRAYQANVAAFQSAKNMANNAITML 162 Score = 39.3 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R +V F Sbjct: 4 LSSFDISGYGLSAQRFRTNIISSNIANANTTRTDEGGPYRRQEVVFK 50 >gi|255017933|ref|ZP_05290059.1| flagellar basal body rod protein FlgB [Listeria monocytogenes FSL F2-515] Length = 96 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 L+ V++N++N +T F+ + F E +G+ Q + A + + Sbjct: 1 MNYLQTANQVVSNNIANANTPNFKASEASFEESLGSSLRASGQNSTESAGNLTKTNTK 58 >gi|224532015|ref|ZP_03672647.1| flagellar basal-body rod protein FlgB [Borrelia valaisiana VS116] gi|224511480|gb|EEF81886.1| flagellar basal-body rod protein FlgB [Borrelia valaisiana VS116] Length = 135 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIKNDIDQKISFVASGKEYLSK 68 L R S ++DN++N +T F+ K+ F E+ A N ++ + S ++LS+ Sbjct: 15 LDVLSLRQSVISDNIANVNTPNFKRSKISFESELEKAFLNKNRNDLNLIKSSDKHLSR 72 >gi|257095361|ref|YP_003169002.1| flagellar basal-body rod protein FlgC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047885|gb|ACV37073.1| flagellar basal-body rod protein FlgC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 17/34 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 G++ N N + EM MI ++ + + +++ Sbjct: 89 GYVTMPNVNVVDEMTNMISASRSYQTNVEVMNTA 122 Score = 35.4 bits (81), Expect = 6.4, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKF 41 + +F + +A A RL+ VA N++N VG +R +V F Sbjct: 3 ILNAFQVAGSALTAQSLRLNAVASNLANADSVVGSDGKPYRAKQVVF 49 >gi|239995128|ref|ZP_04715652.1| flagellar basal-body rod protein FlgB [Alteromonas macleodii ATCC 27126] Length = 144 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 +A +R+ ++ N++N +T G++ + F++ + + + + AS + + Sbjct: 14 SALTIRTERMEVISGNLANANTPGYKARDIDFNKAMQSAMREASGGTANHASSGMVRTND 73 Query: 70 VGSFISTGTELDFA 83 +G A Sbjct: 74 R---HLSGNSTSVA 84 >gi|309388814|gb|ADO76694.1| flagellar basal-body rod protein FlgB [Halanaerobium praevalens DSM 2228] Length = 128 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 17/35 (48%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 A +R +A+N++N T G++ + F + Sbjct: 10 ALAGSARRGELIANNLANVSTPGYKRQDIDFKSAL 44 >gi|293409440|ref|ZP_06653016.1| flagellar basal-body rod protein FlgC [Escherichia coli B354] gi|291469908|gb|EFF12392.1| flagellar basal-body rod protein FlgC [Escherichia coli B354] Length = 134 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ + S E + + +G+++ Sbjct: 36 GPDGQPYRAKQVVFQVN-AAPGAATGGVKVGDVIESQAPDKLVYEPGNPLADAKGYVKMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 95 NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A N++N G +R +V F + Sbjct: 4 LNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQ-----VNAAPGAA 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V G S+ + G L Sbjct: 59 TGGVKVGDVIESQAPDKLVYEPGNPL 84 >gi|120601522|ref|YP_965922.1| hypothetical protein Dvul_0472 [Desulfovibrio vulgaris DP4] gi|120561751|gb|ABM27495.1| protein of unknown function DUF1078 domain protein [Desulfovibrio vulgaris DP4] Length = 125 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 15/35 (42%) Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 +E SN ++ EM M+ + + I ++ Sbjct: 82 VEGSNTDTAREMVSMMETQRAHEANVASIRAHDDM 116 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 G AA A L A+N++N +T GFR + ++ V G+ Sbjct: 5 TGWAALDAFGIGLGVTANNIANVNTDGFRASQTRYE---------TGPGGEGVRVGEIRE 55 Query: 67 SKEVGSFIS 75 S G Sbjct: 56 STTPGPLHE 64 >gi|256830790|ref|YP_003159518.1| flagellar basal-body rod protein FlgC [Desulfomicrobium baculatum DSM 4028] gi|256579966|gb|ACU91102.1| flagellar basal-body rod protein FlgC [Desulfomicrobium baculatum DSM 4028] Length = 145 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 6/34 (17%), Positives = 16/34 (47%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N + EM M+ + + + + I ++ +A+ Sbjct: 108 NVVEEMTNMLSAMRAYEANVSTITTSKSMFSKAL 141 Score = 42.0 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 12/81 (14%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE------VVGAIK 49 T+ ++G +A A L+ ++ N++N T G +R +V F E A+ Sbjct: 4 MTAIDVGASALKAERTHLNVISMNLANAKTTRTVDGGPYRRKEVVFKETEVQSPFSKAMN 63 Query: 50 NDIDQKISFVASGKEYLSKEV 70 + +DQ + V + Sbjct: 64 SALDQDVKGVRVESVQNDRRP 84 >gi|322379367|ref|ZP_08053738.1| flagellar basal body rod protein FlgC [Helicobacter suis HS1] gi|322380862|ref|ZP_08054952.1| flagellar basal body rod protein FlgC [Helicobacter suis HS5] gi|321146713|gb|EFX41523.1| flagellar basal body rod protein FlgC [Helicobacter suis HS5] gi|321148185|gb|EFX42714.1| flagellar basal body rod protein FlgC [Helicobacter suis HS1] Length = 165 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 14/36 (38%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM +I T+ + + + AI Sbjct: 125 NVNPVVEMADLIEATRAYQANVAAFQSTKNMAANAI 160 Score = 39.6 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 6/49 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEV 44 +SF+I A R + ++ N++N +T G +R + F Sbjct: 5 LSSFDISGYGLSAQRVRANLISSNIANANTTRTDEGGPYRRQEAVFKSF 53 >gi|226225740|ref|YP_002759846.1| flagellar basal-body rod protein FlgC [Gemmatimonas aurantiaca T-27] gi|226088931|dbj|BAH37376.1| flagellar basal-body rod protein FlgC [Gemmatimonas aurantiaca T-27] Length = 183 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 65/240 (27%), Gaps = 64/240 (26%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S I + A QR+ T+A N++N D V + K V Sbjct: 4 MFKSMGIAASGISAQRQRMETIAQNIANAD--------------VTRGTDGTPYKRREVV 49 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSAS-- 118 + + + G V+A Sbjct: 50 LES---ATAQNALFNPGN------------------------------------VTAQTL 70 Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGIS 178 G V + + I + F V + G MG G + G Sbjct: 71 GNQNVAGAPAFEVPITDAAQTFQVP---VLPVTGGADGVMGGEFGVRVAGVAEDQGEGRL 127 Query: 179 PNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P P D + G++ + ++ E+ +++ + + + + + + A+ Sbjct: 128 VYEPGHPDADGN------GYVRYPDIDTTQELVKLMDAKRIYEANAAVFQTAKSMLRAAL 181 >gi|311068140|ref|YP_003973063.1| flagellar basal body rod protein FlgC [Bacillus atrophaeus 1942] gi|310868657|gb|ADP32132.1| flagellar basal body rod protein FlgC [Bacillus atrophaeus 1942] Length = 149 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM ++ T+ + + T ++ ++ +L+A+ Sbjct: 104 GYVQKPNVDPLKEMVDLVSSTRSYEANVTAMNASKGMLLKAL 145 Score = 40.4 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 S N+ +A A R+ V+ N++N DT Sbjct: 5 QSLNVSGSALTAQRVRMDVVSSNLANMDTT 34 >gi|307293790|ref|ZP_07573634.1| flagellar basal-body rod protein FlgB [Sphingobium chlorophenolicum L-1] gi|306879941|gb|EFN11158.1| flagellar basal-body rod protein FlgB [Sphingobium chlorophenolicum L-1] Length = 122 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A QRLS +A N++N T G++ + F A+K ++ A + + + Sbjct: 14 ALALRSQRLSLLASNIANASTPGYKARDIDFES---ALKEATSRQGKSAADVSQAVDDSM 70 Query: 71 GSFISTGTELD 81 G + + LD Sbjct: 71 GYRVPLQSSLD 81 >gi|77460471|ref|YP_349978.1| flagellar basal body rod protein FlgC [Pseudomonas fluorescens Pf0-1] gi|77384474|gb|ABA75987.1| putative flagellar basal-body rod protein [Pseudomonas fluorescens Pf0-1] Length = 147 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V +++ + P P D G++ N N + EM MI ++ F + ++ Sbjct: 79 GVVEDQSNLEARYEPNHPAADAK------GYVYYPNVNVVEEMADMISASRSFQTNAEMM 132 Query: 228 DENEKSMLEAIRNIA 242 + K+M++ + + Sbjct: 133 NTA-KTMMQKVLTLG 146 Score = 43.1 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 FNI + A RL+TVA N++N +TV +R F+ + ++ + Sbjct: 7 FNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGGSNSLFQ 66 Query: 59 VASGKEYLSKEVGSFISTGT 78 + +G Sbjct: 67 NQDAAGQGVQVMGVVEDQSN 86 >gi|260682026|ref|YP_003213311.1| flagellar basal-body rod protein [Clostridium difficile CD196] gi|260685624|ref|YP_003216757.1| flagellar basal-body rod protein [Clostridium difficile R20291] gi|260208189|emb|CBA60524.1| flagellar basal-body rod protein [Clostridium difficile CD196] gi|260211640|emb|CBE01891.1| flagellar basal-body rod protein [Clostridium difficile R20291] Length = 128 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ ++S ++ + + +A+ Sbjct: 83 GYVEYPNVNILVEMTDLITASRAYDSNVDTLNAQKSMISKAL 124 Score = 39.3 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 7 IGLAAQLALEQRLSTVADNMSNTD-TVG-----FRTIKVKFSEVVGAIKNDIDQKISFV 59 I + A ++ ++ N++N + T G +R V F E + K++ V Sbjct: 3 ISASGLTAESLKMDIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKVTSV 61 >gi|238916743|ref|YP_002930260.1| flagellar basal-body rod protein FlgB [Eubacterium eligens ATCC 27750] gi|238872103|gb|ACR71813.1| flagellar basal-body rod protein FlgB [Eubacterium eligens ATCC 27750] Length = 130 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 11/84 (13%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV-------GAIKNDIDQKISFVA-- 60 +A A R + +N++N DT ++ V+FS + G + + Q+++ V Sbjct: 14 SAADASWTREEVLTNNIANVDTPNYKRQDVEFSSFLANALQRSGKSTSSLTQRVNNVNYN 73 Query: 61 --SGKEYLSKEVGSFISTGTELDF 82 S + Y S+ + G +D Sbjct: 74 DLSIRTYTDNSTLSYRTDGNNVDL 97 >gi|161503737|ref|YP_001570849.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865084|gb|ABX21707.1| hypothetical protein SARI_01822 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 134 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 12/90 (13%) Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 G+ + + SV SQ + P PL D + G+++ N + + E Sbjct: 54 APGQATGGVKVASVIESQAPEK------LVYEPGNPLADAN------GYVKMPNVDVVGE 101 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 M + ++ + + +++ + ML+ + Sbjct: 102 MVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.6 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A +RL+ A N++N G +R +V F V A Sbjct: 4 LNIFDIAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQ--VDAAPGQATGG 61 Query: 56 ISFVAS 61 + + Sbjct: 62 VKVASV 67 >gi|114777413|ref|ZP_01452410.1| Flagellar basal-body rod protein FlgC [Mariprofundus ferrooxydans PV-1] gi|114552195|gb|EAU54697.1| Flagellar basal-body rod protein FlgC [Mariprofundus ferrooxydans PV-1] Length = 148 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQK 55 +S +I + A R+ VA+N++N + G +R +V F V A Sbjct: 6 LSSMHISASGMSAQRTRMDIVAENIANAGSTRTSEGGPYRRRQVIFQAVSPAQPFSQVFN 65 Query: 56 ISFVASGKEYL 66 SF + G++ + Sbjct: 66 SSFQSEGQKSV 76 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 22/42 (52%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G ++ N N + EM M + F + T ++ +++ L+++ Sbjct: 103 GIVKMPNVNPVEEMVDMNSAARSFEANVTTMEASKRMFLKSL 144 >gi|262276420|ref|ZP_06054229.1| flagellar basal-body rod protein FlgB [Grimontia hollisae CIP 101886] gi|262220228|gb|EEY71544.1| flagellar basal-body rod protein FlgB [Grimontia hollisae CIP 101886] Length = 131 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 23/42 (54%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 QR T+A N++N +T G++ V F + + A + + +S Sbjct: 20 AQRAETLASNLANANTPGYKAQDVDFEQALQAATSGANFGLS 61 >gi|331005437|ref|ZP_08328816.1| flagellar basal body protein [gamma proteobacterium IMCC1989] gi|330420713|gb|EGG95000.1| flagellar basal body protein [gamma proteobacterium IMCC1989] Length = 130 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 19/47 (40%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK 55 + A L R ++ N++N T G+ V F + + + D Sbjct: 14 MTALDGLLLRHQVISHNIANVSTPGYSAKTVSFEQFLTNMSMDATSP 60 >gi|213026534|ref|ZP_03340981.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 108 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 12/90 (13%) Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 G+ + + SV SQ + P PL D + G+++ N + + E Sbjct: 28 APGQATGGVKVASVIESQAPEK------LVYEPGNPLADAN------GYVKMPNVDVVGE 75 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 M + ++ + + +++ + ML+ + Sbjct: 76 MVNTMSASRSYQANIEVLNTVKSMMLKTLT 105 >gi|326389602|ref|ZP_08211168.1| flagellar hook-associated protein FlgK [Thermoanaerobacter ethanolicus JW 200] gi|325994317|gb|EGD52743.1| flagellar hook-associated protein FlgK [Thermoanaerobacter ethanolicus JW 200] Length = 482 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 1/69 (1%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFVAS 61 I ++ L N++N +T G+ V + + + DQ + Sbjct: 5 QGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGKAIGE 64 Query: 62 GKEYLSKEV 70 G + Sbjct: 65 GVKIQDIRQ 73 Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM M+ + + + +I ++ + I + Sbjct: 438 SGVSLDEEMTNMLKYQKSYVASARVITVMDELLDTLINRMG 478 >gi|242278629|ref|YP_002990758.1| flagellar basal body rod protein FlgB [Desulfovibrio salexigens DSM 2638] gi|242121523|gb|ACS79219.1| flagellar basal-body rod protein FlgB [Desulfovibrio salexigens DSM 2638] Length = 136 Score = 47.0 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 21/34 (61%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN 50 QR + V+ N++N +T G++ +++F E + N Sbjct: 21 QRQNLVSSNLANVNTPGYKEKRLEFEEDLQKAMN 54 >gi|289679031|ref|ZP_06499921.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. syringae FF5] Length = 124 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F + +++ KSM++ + + Sbjct: 85 NVNVVEEMADMISASRSFQTNAEIMNTA-KSMMQKVLTLG 123 >gi|256004780|ref|ZP_05429755.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum DSM 2360] gi|255991230|gb|EEU01337.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum DSM 2360] gi|316940781|gb|ADU74815.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum DSM 1313] Length = 134 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 + A R ++ N++N DT G++ V F E + Sbjct: 15 SLDAALLRNEAISQNIANVDTPGYKRKTVAFEEYL 49 >gi|255099413|ref|ZP_05328390.1| flagellar basal-body rod protein [Clostridium difficile QCD-63q42] Length = 134 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ ++S ++ + + +A+ Sbjct: 89 GYVEYPNVNILVEMTDLITASRAYDSNVDTLNAQKSMISKAL 130 Score = 40.4 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTD-TVG-----FRTIKVKFSEVVGAIKNDIDQKI 56 + I + A ++ ++ N++N + T G +R V F E + K+ Sbjct: 5 SGMRISASGLTAESLKMDIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKV 64 Query: 57 SFV 59 + V Sbjct: 65 TSV 67 >gi|332798814|ref|YP_004460313.1| flagellar hook-associated protein FlgK [Tepidanaerobacter sp. Re1] gi|332696549|gb|AEE91006.1| flagellar hook-associated protein FlgK [Tepidanaerobacter sp. Re1] Length = 459 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 1 MQTSFN---IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 MQ+SF I A A ++ TVA N+SN +T G+ +V A + +I Sbjct: 1 MQSSFLGIEIAKTALFANQRAQQTVAHNVSNANTPGYSRQRVILEATHTAYGMGANWQIG 60 Query: 58 F 58 Sbjct: 61 T 61 Score = 39.6 bits (92), Expect = 0.41, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 19/42 (45%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S+ + EM +MI +N+ + ++ ++ + I + Sbjct: 417 TSSVSLDEEMTKMIQYLHGYNAASRIVTTVDEMLDTIINRMG 458 >gi|308068649|ref|YP_003870254.1| flagellar basal-body rod protein FlgB [Paenibacillus polymyxa E681] gi|305857928|gb|ADM69716.1| flagellar basal-body rod protein FlgB [Paenibacillus polymyxa E681] Length = 135 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 A A R +ADN+SN DT F+ +V F E++ + + + + + Sbjct: 14 AGVQAANTRQRVMADNISNADTPYFKRSEVSFEELLQQQMDGDVTPLRGKVTNSRH--FQ 71 Query: 70 VGSFIS 75 +G S Sbjct: 72 IGPVNS 77 >gi|16760051|ref|NP_455668.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764531|ref|NP_460146.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142178|ref|NP_805520.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413838|ref|YP_150913.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179692|ref|YP_216109.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614602|ref|YP_001588567.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553037|ref|ZP_02346787.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994039|ref|ZP_02575131.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234101|ref|ZP_02659159.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237257|ref|ZP_02662315.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244774|ref|ZP_02669706.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264032|ref|ZP_02686005.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467127|ref|ZP_02700969.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822618|ref|ZP_02834618.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446237|ref|YP_002040429.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448226|ref|YP_002045174.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469652|ref|ZP_03075636.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737972|ref|YP_002114174.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250491|ref|YP_002146868.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264065|ref|ZP_03164139.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362761|ref|YP_002142398.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244048|ref|YP_002215962.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389763|ref|ZP_03216374.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930701|ref|ZP_03221574.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353087|ref|YP_002226888.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857317|ref|YP_002243968.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161846|ref|ZP_03347556.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419883|ref|ZP_03352949.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424678|ref|ZP_03357443.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582035|ref|ZP_03363861.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213615928|ref|ZP_03371754.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648924|ref|ZP_03378977.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865507|ref|ZP_03387626.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584321|ref|YP_002638119.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911005|ref|ZP_04654842.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289828582|ref|ZP_06546407.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392283|sp|P0A1I7|FLGC_SALTY RecName: Full=Flagellar basal-body rod protein flgC; AltName: Full=Putative proximal rod protein gi|60392284|sp|P0A1I8|FLGC_SALTI RecName: Full=Flagellar basal-body rod protein flgC; AltName: Full=Putative proximal rod protein gi|25298909|pir||AH0639 probable flagellar basal-body rod protein FlgC (proximal rod protein) STY1214 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419692|gb|AAL20105.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502345|emb|CAD08299.1| putative flagellar basal-body rod protein FlgC (proximal rod protein) [Salmonella enterica subsp. enterica serovar Typhi] gi|29137808|gb|AAO69369.1| putative flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128095|gb|AAV77601.1| putative flagellar basal-body rod protein FlgC (proximal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127325|gb|AAX65028.1| flagellar biosynthesis, cell-proximal portion of basal-body rod [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363966|gb|ABX67734.1| hypothetical protein SPAB_02352 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404900|gb|ACF65122.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406530|gb|ACF66749.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456016|gb|EDX44855.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713474|gb|ACF92695.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630453|gb|EDX49079.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094238|emb|CAR59743.1| putative flagellar basal-body rod protein FlgC (proximal rod protein) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214194|gb|ACH51591.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242320|gb|EDY24940.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289825|gb|EDY29186.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938564|gb|ACH75897.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602208|gb|EDZ00754.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320160|gb|EDZ05364.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272868|emb|CAR37797.1| putative flagellar basal-body rod protein FlgC (proximal rod protein) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322443|gb|EDZ10282.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328049|gb|EDZ14813.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331940|gb|EDZ18704.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336413|gb|EDZ23177.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341032|gb|EDZ27796.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347372|gb|EDZ34003.1| flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709120|emb|CAR33453.1| putative flagellar basal-body rod protein FlgC (proximal rod protein) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468848|gb|ACN46678.1| flagellar basal body rod protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246386|emb|CBG24195.1| putative flagellar basal-body rod protein FlgC (proximal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992949|gb|ACY87834.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157716|emb|CBW17208.1| putative flagellar basal-body rod protein FlgC (proximal rod protein) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912162|dbj|BAJ36136.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086385|emb|CBY96158.1| Flagellar basal-body rod protein flgC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223793|gb|EFX48856.1| Flagellar basal-body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616545|gb|EFY13454.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620514|gb|EFY17378.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622508|gb|EFY19353.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629659|gb|EFY26434.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632621|gb|EFY29367.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636884|gb|EFY33587.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641578|gb|EFY38216.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644068|gb|EFY40614.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322653957|gb|EFY50280.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658489|gb|EFY54751.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663347|gb|EFY59549.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670081|gb|EFY66221.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674855|gb|EFY70946.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676675|gb|EFY72742.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682597|gb|EFY78616.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686650|gb|EFY82629.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714162|gb|EFZ05733.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129445|gb|ADX16875.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195764|gb|EFZ80940.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198344|gb|EFZ83448.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203172|gb|EFZ88202.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209175|gb|EFZ94112.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209679|gb|EFZ94608.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217865|gb|EGA02580.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222153|gb|EGA06537.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224925|gb|EGA09183.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229667|gb|EGA13790.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232892|gb|EGA16988.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240627|gb|EGA24669.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242941|gb|EGA26962.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250258|gb|EGA34147.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252633|gb|EGA36471.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258839|gb|EGA42492.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261028|gb|EGA44621.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266937|gb|EGA50422.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269978|gb|EGA53427.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623710|gb|EGE30055.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628167|gb|EGE34510.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988066|gb|AEF07049.1| flagellar basal body rod protein FlgC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 134 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 12/90 (13%) Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 G+ + + SV SQ + P PL D + G+++ N + + E Sbjct: 54 APGQATGGVKVASVIESQAPEK------LVYEPGNPLADAN------GYVKMPNVDVVGE 101 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 M + ++ + + +++ + ML+ + Sbjct: 102 MVNTMSASRSYQANIEVLNTVKSMMLKTLT 131 Score = 36.6 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A +RL+ A N++N G +R +V F V A Sbjct: 4 LNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQ--VDAAPGQATGG 61 Query: 56 ISFVAS 61 + + Sbjct: 62 VKVASV 67 >gi|332140552|ref|YP_004426290.1| flagellar hook-associated protein FlgK [Alteromonas macleodii str. 'Deep ecotype'] gi|327550574|gb|AEA97292.1| flagellar hook-associated protein FlgK [Alteromonas macleodii str. 'Deep ecotype'] Length = 680 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 20/36 (55%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 F++ + A + L T ++N++N +T G+ + + Sbjct: 7 FSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTE 42 >gi|281417194|ref|ZP_06248214.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum JW20] gi|281408596|gb|EFB38854.1| flagellar basal-body rod protein FlgB [Clostridium thermocellum JW20] Length = 134 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 + A R ++ N++N DT G++ V F E + Sbjct: 15 SLDAALLRNEAISQNIANVDTPGYKRKTVAFEEYL 49 >gi|170725961|ref|YP_001759987.1| flagellar hook-associated protein FlgK [Shewanella woodyi ATCC 51908] gi|169811308|gb|ACA85892.1| flagellar hook-associated protein FlgK [Shewanella woodyi ATCC 51908] Length = 637 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV 44 NI LA + +L+ ++N++N +T G+ + S + Sbjct: 3 MDLLNIARTGVLASQSQLAVTSNNIANANTQGYHRQVAEQSSL 45 >gi|28275264|ref|NP_783519.1| flagellar hook-associated protein [Shewanella oneidensis MR-1] Length = 386 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV 44 NI LA + +L ++N++N +TVG+ + + Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTVGYHRQVATQTTL 45 >gi|167034947|ref|YP_001670178.1| flagellar basal body rod protein FlgB [Pseudomonas putida GB-1] gi|166861435|gb|ABY99842.1| flagellar basal-body rod protein FlgB [Pseudomonas putida GB-1] Length = 136 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + F+ V+ A + Sbjct: 1 MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFASVLAAESDKQQSGG 60 Query: 57 SF 58 F Sbjct: 61 RF 62 >gi|149911696|ref|ZP_01900304.1| Flagellar hook-associated protein [Moritella sp. PE36] gi|149805226|gb|EDM65243.1| Flagellar hook-associated protein [Moritella sp. PE36] Length = 659 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 M IG + L ++ L+T +N+SN +T G+ + + Sbjct: 1 MANLLQIGTSGVLGHQKMLNTTGNNISNVNTEGYSRQRTQ 40 >gi|167038179|ref|YP_001665757.1| flagellar hook-associated protein FlgK [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039112|ref|YP_001662097.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X514] gi|300913298|ref|ZP_07130615.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X561] gi|307723688|ref|YP_003903439.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X513] gi|320116588|ref|YP_004186747.1| flagellar hook-associated protein FlgK [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853352|gb|ABY91761.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X514] gi|166857013|gb|ABY95421.1| flagellar hook-associated protein FlgK [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889983|gb|EFK85128.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X561] gi|307580749|gb|ADN54148.1| flagellar hook-associated protein FlgK [Thermoanaerobacter sp. X513] gi|319929679|gb|ADV80364.1| flagellar hook-associated protein FlgK [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 480 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 1/69 (1%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFVAS 61 I ++ L N++N +T G+ V + + + DQ + Sbjct: 5 QGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGKAIGE 64 Query: 62 GKEYLSKEV 70 G + Sbjct: 65 GVKIQDIRQ 73 Score = 36.6 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM M+ + + + +I ++ + I + Sbjct: 436 SGVSLDEEMTNMLKYQKSYAASARVITAIDELLDTLINRMG 476 >gi|327398477|ref|YP_004339346.1| flagellar hook-associated protein FlgK [Hippea maritima DSM 10411] gi|327181106|gb|AEA33287.1| flagellar hook-associated protein FlgK [Hippea maritima DSM 10411] Length = 580 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 21/38 (55%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 + NIG++ + ++T +N++N +T G+ +V Sbjct: 6 DALNIGVSGIFVNKAAINTTGNNVANVNTPGYSRERVD 43 Score = 37.3 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 2/44 (4%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + LE + E +I + + + I + I Sbjct: 536 QQSLEG--VSLDEEAANLIKFQRAYQANAKFISVVDDMTQTLIN 577 >gi|256750927|ref|ZP_05491811.1| flagellar hook-associated protein FlgK [Thermoanaerobacter ethanolicus CCSD1] gi|256750262|gb|EEU63282.1| flagellar hook-associated protein FlgK [Thermoanaerobacter ethanolicus CCSD1] Length = 480 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 1/69 (1%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFVAS 61 I ++ L N++N +T G+ V + + + DQ + Sbjct: 5 QGLEIAKTGLFVSQKALDVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGKAIGE 64 Query: 62 GKEYLSKEV 70 G + Sbjct: 65 GVKIQDIRQ 73 Score = 36.2 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM M+ + + + +I ++ + I + Sbjct: 436 SGVSLDEEMTNMLKYQKSYAASARVITAIDELLDTLINRMG 476 >gi|254785369|ref|YP_003072798.1| flagellar basal body rod protein FlgC [Teredinibacter turnerae T7901] gi|237685992|gb|ACR13256.1| flagellar basal-body rod protein FlgC [Teredinibacter turnerae T7901] Length = 145 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F +++ K M++ + + Sbjct: 106 NVNVVEEMTNMISASRSFQVNVEVMNSA-KQMVQRVLTLG 144 >gi|58582192|ref|YP_201208.1| flagellar basal body rod protein FlgB [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624085|ref|YP_451457.1| flagellar basal body rod protein FlgB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426786|gb|AAW75823.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368025|dbj|BAE69183.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 132 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Query: 1 MQTSFNIGL----AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M + F+ L A EQR+ +A N+SN DT G++ + F + + + + D + Sbjct: 1 MSSPFSSFLGVHGDALALREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSAQGEQDGGL 60 Query: 57 SFVASGKEYLSKEVG--SFIST 76 K Y G F T Sbjct: 61 MQTTDAKHYAVGGGGLNPFQIT 82 >gi|303325592|ref|ZP_07356035.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. 3_1_syn3] gi|302863508|gb|EFL86439.1| flagellar hook-associated protein FlgK [Desulfovibrio sp. 3_1_syn3] Length = 710 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 NIG +A A + +S +N++N DT G+ V + G Q + A Sbjct: 6 LNIGQSALNASQAWISVTGNNLANADTEGYSRQYVDQRDAGGLTAKPGAQGLGVNA 61 Score = 36.2 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 14/37 (37%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 S N EM +I + + LI ++ + + Sbjct: 670 SGVNMDEEMSNLIKFQHSYTAAAKLITTADQMLQTLL 706 >gi|254292929|ref|YP_003058952.1| flagellar basal-body rod protein FlgC [Hirschia baltica ATCC 49814] gi|254041460|gb|ACT58255.1| flagellar basal-body rod protein FlgC [Hirschia baltica ATCC 49814] Length = 138 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 24/47 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 G ++ SN +++ EM M + + + +++ + +L A+ + + Sbjct: 92 GMVKYSNVSALVEMTDMREAQRAYEANLNVVEASRSMLLAAVDILKA 138 Score = 39.6 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKNDIDQ 54 ++ + + A R+ A+N++N ++ G ++ F + Sbjct: 6 MSAMSSAASGLRAQTVRIRVSAENLANANSTGDTPGADPYQRKVPVFKNYLDRESGAERV 65 Query: 55 KISFV 59 K+S V Sbjct: 66 KVSGV 70 >gi|295399807|ref|ZP_06809788.1| flagellar basal-body rod protein FlgC [Geobacillus thermoglucosidasius C56-YS93] gi|312111681|ref|YP_003989997.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y4.1MC1] gi|294978210|gb|EFG53807.1| flagellar basal-body rod protein FlgC [Geobacillus thermoglucosidasius C56-YS93] gi|311216782|gb|ADP75386.1| flagellar basal-body rod protein FlgC [Geobacillus sp. Y4.1MC1] Length = 150 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 24/44 (54%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + G++ N + + EM ++ T+ + + T+ + + +++A+ Sbjct: 103 RNGYVRLPNVDPLKEMVDLMSATRSYEANVTVFNATKGMLMKAL 146 Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 17/84 (20%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKVK-------FSE 43 M + +I +A A R+ V+ NM+N DT G +R V FS Sbjct: 3 MFQNLDITASALTAQRLRMDVVSSNMANVDTTRARFVNGQWEPYRRKLVVMEPRQEGFST 62 Query: 44 VVGAIKNDIDQKISFVASGKEYLS 67 + A N D V K Sbjct: 63 YLQAAMNSRDSVGGGVRVTKIVED 86 >gi|291613044|ref|YP_003523201.1| flagellar hook-associated protein FlgK [Sideroxydans lithotrophicus ES-1] gi|291583156|gb|ADE10814.1| flagellar hook-associated protein FlgK [Sideroxydans lithotrophicus ES-1] Length = 640 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + + I ++A A + L+T ++N++N +T G+ + + ++ Q ++ Sbjct: 1 MSIYGIAVSALNAAQAGLTTTSNNIANANTPGYSRQAIIQAGMLPQNTGSGYFGQGVNVT 60 Query: 60 ASGKEYLSK 68 + Y Sbjct: 61 TVVRRYDQF 69 >gi|149911704|ref|ZP_01900312.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Moritella sp. PE36] gi|149805234|gb|EDM65251.1| flagellar biosynthesis; cell-proximal portion of basal-body rod [Moritella sp. PE36] Length = 140 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 165 MSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSIT 224 G V + ++ P PL D + G++ N N M EM MI ++ + + Sbjct: 67 NVAGIVESDAPLVNEFNPNHPLADEN------GYVYRPNVNIMEEMANMISASRSYQTNV 120 Query: 225 TLIDENEKSMLEAI 238 + D +K + + + Sbjct: 121 QIADAAKKMLNKTL 134 Score = 38.1 bits (88), Expect = 0.97, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKI 56 F+I +A A RL+T A N++N ++V ++ F + ++ + Sbjct: 5 RVFDIAGSAMSAQSVRLNTTASNLANANSVSSSAGETYKARYPIFQAQLDQANFSQNEAV 64 Query: 57 SFVASG 62 +G Sbjct: 65 GVNVAG 70 >gi|126697817|ref|YP_001086714.1| flagellar basal-body rod protein [Clostridium difficile 630] gi|254973910|ref|ZP_05270382.1| flagellar basal-body rod protein [Clostridium difficile QCD-66c26] gi|255091296|ref|ZP_05320774.1| flagellar basal-body rod protein [Clostridium difficile CIP 107932] gi|255305270|ref|ZP_05349442.1| flagellar basal-body rod protein [Clostridium difficile ATCC 43255] gi|255312954|ref|ZP_05354537.1| flagellar basal-body rod protein [Clostridium difficile QCD-76w55] gi|255515713|ref|ZP_05383389.1| flagellar basal-body rod protein [Clostridium difficile QCD-97b34] gi|255648807|ref|ZP_05395709.1| flagellar basal-body rod protein [Clostridium difficile QCD-37x79] gi|306518922|ref|ZP_07405269.1| flagellar basal body rod protein FlgC [Clostridium difficile QCD-32g58] gi|115249254|emb|CAJ67067.1| Flagellar basal-body rod protein FlgC [Clostridium difficile] Length = 134 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++E N N + EM +I ++ ++S ++ + + +A+ Sbjct: 89 GYVEYPNVNILVEMTDLITASRAYDSNVDTLNAQKSMISKAL 130 Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTD-TVG-----FRTIKVKFSEVVGAIKNDIDQKI 56 + I + A ++ ++ N++N + T G +R V F E + K+ Sbjct: 5 SGMRISASGLTAESLKMDIISSNVANINATRGPNGEAYRRKVVSFEENYDNKLGMLGVKV 64 Query: 57 SFV 59 + V Sbjct: 65 TSV 67 >gi|156976147|ref|YP_001447053.1| flagellar hook-associated protein [Vibrio harveyi ATCC BAA-1116] gi|156527741|gb|ABU72826.1| hypothetical protein VIBHAR_04918 [Vibrio harveyi ATCC BAA-1116] Length = 457 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 NI L+ A L A N++N T G+ + + V N + + + Sbjct: 1 MNLVNIALSGLNANRVALDVTAQNVANIITPGYSRQQALMTSVGDGKYNKLSPGMGVEVT 60 Query: 62 GKEYLSKE 69 ++ + Sbjct: 61 SIRRVTDQ 68 >gi|148270547|ref|YP_001245007.1| flagellar basal-body rod protein FlgC [Thermotoga petrophila RKU-1] gi|170289253|ref|YP_001739491.1| flagellar basal-body rod protein FlgC [Thermotoga sp. RQ2] gi|147736091|gb|ABQ47431.1| flagellar basal-body rod protein FlgC [Thermotoga petrophila RKU-1] gi|170176756|gb|ACB09808.1| flagellar basal-body rod protein FlgC [Thermotoga sp. RQ2] Length = 140 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM +I+ + +++ + + + A++ Sbjct: 94 GYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKAMVNSALQ 136 Score = 42.3 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 1 MQTSF---NIGLAAQLALEQRLSTVADNMSNTDT----VG--FRTIKVKFSEVVGAIKND 51 M + F NI A R+ V+ N++N +T G +R F+E + N Sbjct: 1 MMSEFEIMNISATGMSAQRLRVEIVSTNIANAETTRTETGEPYRRKVPVFAEYLRRTPNG 60 >gi|451871|gb|AAB59019.1| flagellar hook-filament junction protein [Bacillus subtilis] Length = 129 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASGKEYLSK 68 A A + LST A+N++N +T G+ +V + A+ + ++ + +G + S Sbjct: 14 ALSAQQAALSTTANNVANANTDGYTRQRVSLEATDYFPAVSKNAEKTAGQMGTGVQGKSV 73 Query: 69 E 69 E Sbjct: 74 E 74 >gi|15644117|ref|NP_229166.1| flagellar basal-body rod protein FlgC [Thermotoga maritima MSB8] gi|281412855|ref|YP_003346934.1| flagellar basal-body rod protein FlgC [Thermotoga naphthophila RKU-10] gi|4981925|gb|AAD36435.1|AE001790_7 flagellar basal-body rod protein FlgC [Thermotoga maritima MSB8] gi|281373958|gb|ADA67520.1| flagellar basal-body rod protein FlgC [Thermotoga naphthophila RKU-10] Length = 140 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N N + EM +I+ + +++ + + + A++ Sbjct: 94 GYVRMPNVNIVREMVDLINAQRAYDANVAAFNVTKAMVNSALQ 136 Score = 42.3 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 1 MQTSF---NIGLAAQLALEQRLSTVADNMSNTDT----VG--FRTIKVKFSEVVGAIKND 51 M + F NI A R+ V+ N++N +T G +R F+E + N Sbjct: 1 MMSEFEIMNISATGMSAQRLRVEIVSTNIANAETTRTETGEPYRRKVPVFAEYLRRTPNG 60 >gi|226327748|ref|ZP_03803266.1| hypothetical protein PROPEN_01621 [Proteus penneri ATCC 35198] gi|225203452|gb|EEG85806.1| hypothetical protein PROPEN_01621 [Proteus penneri ATCC 35198] Length = 134 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 12/87 (13%) Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 G+ + + + V R E P P D G++ N + + EM Sbjct: 56 GQEVGGVRVTEVVDDPAPFRME------YQPGHPFADEK------GYVRMPNVDVVGEMI 103 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 I ++ + + +++ + M + + Sbjct: 104 NTISASRSYQANVEVMNTAKSLMQKTL 130 Score = 35.8 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 11/69 (15%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I +A A QRL+ A NM+N D+V +R +V F + Q++ Sbjct: 7 FDISGSALSAQSQRLNVSASNMANADSVAGPDGEPYRAKQVVFQ-----VNAPAGQEVGG 61 Query: 59 VASGKEYLS 67 V + Sbjct: 62 VRVTEVVDD 70 >gi|71907892|ref|YP_285479.1| flagellar basal-body rod protein FlgB [Dechloromonas aromatica RCB] gi|71847513|gb|AAZ47009.1| Flagellar basal-body rod protein FlgB [Dechloromonas aromatica RCB] Length = 153 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 A Q+L +A N++N DT G++ + + F E + ++ + +A+ Sbjct: 33 GVRAYRQQL--IASNIANADTPGYKAVDIDFEEAMRIAQSASPIPPTMLATTS 83 >gi|254853086|ref|ZP_05242434.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL R2-503] gi|255521220|ref|ZP_05388457.1| flagellar basal body rod protein FlgB [Listeria monocytogenes FSL J1-175] gi|300764523|ref|ZP_07074516.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL N1-017] gi|258606435|gb|EEW19043.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL R2-503] gi|300514877|gb|EFK41931.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL N1-017] Length = 133 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 L+ V++N++N +T F+ + F E +G+ Q + A + + Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESLGSSLRASGQNSTESAGNLTKTNTK 69 >gi|32266907|ref|NP_860939.1| flagellar basal body rod protein FlgC [Helicobacter hepaticus ATCC 51449] gi|32262959|gb|AAP78005.1| flagellar basal body rod protein FlgC [Helicobacter hepaticus ATCC 51449] Length = 163 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM +I T+ + + + AI Sbjct: 123 NVNPVVEMADLIEATRAYQANVAAFQSAKNMASNAIT 159 Score = 41.2 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R++T++ N++N +T G +R +V F Sbjct: 3 LSSFDISGYGLSAQRVRINTISSNIANANTTRTDEGGPYRRREVIFR 49 >gi|293395589|ref|ZP_06639872.1| flagellar hook-associated protein FlgK [Serratia odorifera DSM 4582] gi|291421908|gb|EFE95154.1| flagellar hook-associated protein FlgK [Serratia odorifera DSM 4582] Length = 549 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M S N ++ A + LSTV++N+SN + G+ + A + F+ Sbjct: 1 MSNSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTA-----ILAQNGGMGTMSGFI 55 Query: 60 ASGKEYLS 67 +G S Sbjct: 56 GNGVTVTS 63 >gi|229592133|ref|YP_002874252.1| flagellar basal body rod protein FlgB [Pseudomonas fluorescens SBW25] gi|312962591|ref|ZP_07777081.1| flagellar basal-body rod protein FlgB [Pseudomonas fluorescens WH6] gi|229363999|emb|CAY51549.1| putative flagellar basal-body rod protein [Pseudomonas fluorescens SBW25] gi|311283171|gb|EFQ61762.1| flagellar basal-body rod protein FlgB [Pseudomonas fluorescens WH6] Length = 135 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + FS V+ A ++ Sbjct: 1 MSISFDKALGIHEQALGFRAQRAEVLANNIANADTPNYKARDLDFSAVLAAQQDKTKNGT 60 Query: 57 SFVASGKEYLSKEVG 71 + + G Sbjct: 61 FALNMTNSRHIEAQG 75 >gi|290474980|ref|YP_003467864.1| flagellar hook-filament junction protein 1 [Xenorhabdus bovienii SS-2004] gi|289174297|emb|CBJ81087.1| flagellar biosynthesis; hook-filament junction protein 1 [Xenorhabdus bovienii SS-2004] Length = 546 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M S N ++ A + + V +N++N+ VG+ V N F+ Sbjct: 1 MSNSLMNTAMSGINAAQVAMGVVGNNIANSKNVGYNRQTT-----VLTQNNGTLSPAGFI 55 Query: 60 ASGKEYLS 67 +G S Sbjct: 56 GNGVAVSS 63 >gi|315452789|ref|YP_004073059.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179] gi|315131841|emb|CBY82469.1| flagellar basal-body rod protein [Helicobacter felis ATCC 49179] Length = 163 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 14/36 (38%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM +I T+ + + + AI Sbjct: 123 NVNPVVEMADLIEATRAYQANVAAFQSTKNMATNAI 158 Score = 38.5 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 6/49 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEV 44 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRVRANLISSNIANANTTRTDEGGPYRRQEAIFKSF 51 >gi|251789174|ref|YP_003003895.1| flagellar hook-associated protein FlgK [Dickeya zeae Ech1591] gi|247537795|gb|ACT06416.1| flagellar hook-associated protein FlgK [Dickeya zeae Ech1591] Length = 640 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M N G++ A + LSTV++N+SN G+ + A N + ++ Sbjct: 1 MSNLINTGMSGLSAAQAALSTVSNNISNQAVAGYSRQNA-----LLAQNNGTNVSAGYIG 55 Query: 61 SGKEYLS 67 +G +S Sbjct: 56 NGVTVVS 62 >gi|119477955|ref|ZP_01618055.1| flagellar basal-body rod protein FlgC [marine gamma proteobacterium HTCC2143] gi|119448868|gb|EAW30110.1| flagellar basal-body rod protein FlgC [marine gamma proteobacterium HTCC2143] Length = 147 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ F L++ ++ M +R Sbjct: 108 NVNVVEEMADMISASRSFQVNVELMNSAKQMMQGLLR 144 >gi|255030210|ref|ZP_05302161.1| flagellar basal body rod protein FlgB [Listeria monocytogenes LO28] Length = 107 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 L+ V++N++N +T F+ + F E +G+ Q + A + + Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESLGSSLRASGQNSAESAGNLTKTNTK 69 >gi|170694400|ref|ZP_02885554.1| flagellar hook-associated protein FlgK [Burkholderia graminis C4D1M] gi|170140823|gb|EDT08997.1| flagellar hook-associated protein FlgK [Burkholderia graminis C4D1M] Length = 657 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M N+GL+ A + L+T N+SN T G+ F+E G + Q +S Sbjct: 1 MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVFAETGGQYTGSGFLPQGVST 60 Query: 59 VASGKEYLSK 68 V ++Y Sbjct: 61 VTVTRQYSQY 70 >gi|302874576|ref|YP_003843209.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans 743B] gi|307690813|ref|ZP_07633259.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans 743B] gi|302577433|gb|ADL51445.1| flagellar hook-associated protein FlgK [Clostridium cellulovorans 743B] Length = 579 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKF--SEVVGAIKNDIDQKISF 58 + ++ N A + +ST + N++N +T G+ +V S + + Sbjct: 4 ILSTLNTANKGINAQQTAISTTSHNIANANTEGYSRQRVNLVTSRPFSSPSFNSAAGPGQ 63 Query: 59 VASGKEYLSKE 69 + +G + S E Sbjct: 64 IGTGVDVASIE 74 Score = 38.5 bits (89), Expect = 0.73, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 15/40 (37%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + EM +I + + +I ++ + + + Sbjct: 538 SGVSIDEEMTNLIQFQHAYVANAKVISTVDQLLDVLVNGL 577 >gi|26991080|ref|NP_746505.1| flagellar basal body rod protein FlgB [Pseudomonas putida KT2440] gi|24986115|gb|AAN69969.1|AE016635_5 flagellar basal-body rod protein FlgB [Pseudomonas putida KT2440] Length = 136 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + F+ V+ A + Sbjct: 1 MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFASVLAAESDKQQSGG 60 Query: 57 SF 58 F Sbjct: 61 RF 62 >gi|46906961|ref|YP_013350.1| flagellar basal body rod protein FlgB [Listeria monocytogenes serotype 4b str. F2365] gi|47095276|ref|ZP_00232887.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes str. 1/2a F6854] gi|224498792|ref|ZP_03667141.1| flagellar basal body rod protein FlgB [Listeria monocytogenes Finland 1988] gi|254829367|ref|ZP_05234054.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL N3-165] gi|254900054|ref|ZP_05259978.1| flagellar basal body rod protein FlgB [Listeria monocytogenes J0161] gi|254911393|ref|ZP_05261405.1| flagellar basal body rod protein FlgB [Listeria monocytogenes J2818] gi|254935720|ref|ZP_05267417.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes F6900] gi|254993618|ref|ZP_05275808.1| flagellar basal body rod protein FlgB [Listeria monocytogenes FSL J2-064] gi|255025678|ref|ZP_05297664.1| flagellar basal body rod protein FlgB [Listeria monocytogenes FSL J2-003] gi|46880227|gb|AAT03527.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes serotype 4b str. F2365] gi|47016347|gb|EAL07269.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes str. 1/2a F6854] gi|258601780|gb|EEW15105.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL N3-165] gi|258608303|gb|EEW20911.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes F6900] gi|293589330|gb|EFF97664.1| flagellar basal body rod protein FlgB [Listeria monocytogenes J2818] Length = 133 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 L+ V++N++N +T F+ + F E +G+ Q + A + + Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESLGSSLRASGQNSTESAGNLTKTNTK 69 >gi|299534789|ref|ZP_07048119.1| flagellar basal body rod protein FlgC [Lysinibacillus fusiformis ZC1] gi|298729877|gb|EFI70422.1| flagellar basal body rod protein FlgC [Lysinibacillus fusiformis ZC1] Length = 153 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM ++ T+ + + T+ + N+ + +A+ Sbjct: 108 GYVNMPNVDPLKEMVDLMSATRSYEANITVFNANKSMLTKAL 149 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV 32 N +A A R+ ++ NM+N DT Sbjct: 6 GMNTTASALTAQRLRMDVISSNMANMDTT 34 >gi|167948873|ref|ZP_02535947.1| Flagellar basal-body rod protein FlgB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 127 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A L +R +A N++N DT G++ F +V+ + + + + ++ E Sbjct: 11 ALLLRARRSELIASNLANADTPGYKARDFDFHKVLQQAQ---GEPVRLRTTHPSHIQDEQ 67 Query: 71 GSFIST 76 G T Sbjct: 68 GVVPPT 73 >gi|77918753|ref|YP_356568.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM 2380] gi|77544836|gb|ABA88398.1| flagellar hook-associated protein [Pelobacter carbinolicus DSM 2380] Length = 464 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 21/67 (31%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 + N+G + + L +N++N +T G+ V V A+ Sbjct: 6 DALNLGKTSLATHQTLLDVTGNNIANVNTDGYSRQSVDLGTVPALNFRGFQIGRGVTANN 65 Query: 63 KEYLSKE 69 + Sbjct: 66 IQRAEDT 72 Score = 39.3 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 6/35 (17%), Positives = 14/35 (40%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + EM +I + F + L+ ++ M + Sbjct: 426 VSLEEEMINLIQYQRGFEASAKLLTTVDEMMDTVL 460 >gi|37525839|ref|NP_929183.1| flagellar basal body rod protein FlgC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785268|emb|CAE14209.1| Flagellar basal-body rod protein FlgC (Putative proximal rod protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 134 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N + + EM I ++ + + +++ + ML+ + Sbjct: 89 GYVRMPNVDVVGEMINTISASRSYQANVEVLNTTKSMMLKTLT 131 Score = 38.5 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 + F+I +A A QRL+ A NM+N D+V +R +V F A + + Sbjct: 4 LSIFDIAGSALSAQSQRLNVSASNMANADSVAGPDGQPYRAKQVVFRVAAPAGQETGGVR 63 Query: 56 ISFV 59 +S + Sbjct: 64 VSEI 67 >gi|126176158|ref|YP_001052307.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS155] gi|304412510|ref|ZP_07394116.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS183] gi|307307169|ref|ZP_07586907.1| flagellar basal-body rod protein FlgC [Shewanella baltica BA175] gi|125999363|gb|ABN63438.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS155] gi|304349152|gb|EFM13564.1| flagellar basal-body rod protein FlgC [Shewanella baltica OS183] gi|306910408|gb|EFN40839.1| flagellar basal-body rod protein FlgC [Shewanella baltica BA175] Length = 138 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 +G++ SN N++ EM M+ ++ F + +++ +SM + + + Sbjct: 91 QGYVAYSNVNTIEEMADMMAASRSFETSVEIMNRA-RSMQQGLLQLG 136 Score = 39.3 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 17/84 (20%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISF 58 + I A A RL+TVA N++N T +R +K F+ + + + Sbjct: 7 YQIAGAGMNAQTIRLNTVASNLANAGTAAENPESAYRALKPVFATIYDSTQQ-------- 58 Query: 59 VASGKEYLSKEVGSFISTGTELDF 82 G S EV + LD Sbjct: 59 ---GAIGASIEVSDIVQADAPLDM 79 >gi|153001466|ref|YP_001367147.1| flagellar hook-associated protein FlgK [Shewanella baltica OS185] gi|151366084|gb|ABS09084.1| flagellar hook-associated protein FlgK [Shewanella baltica OS185] Length = 641 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L ++N++N +T G+ S + + N ++V K Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVNDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RIYND 70 >gi|20806999|ref|NP_622170.1| flagellar hook-associated protein FlgK [Thermoanaerobacter tengcongensis MB4] gi|20515482|gb|AAM23774.1| Flagellar hook-associated protein [Thermoanaerobacter tengcongensis MB4] Length = 482 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 1/69 (1%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFVAS 61 I ++ L N++N +T G+ V + + + DQ + Sbjct: 5 QGLEIAKTGLFVSQKALEVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGKAIGE 64 Query: 62 GKEYLSKEV 70 G + + Sbjct: 65 GVKIVDIRQ 73 Score = 37.3 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM M+ + + + +I ++ + I + Sbjct: 438 SGVSLDEEMTNMLKYQKSYAACARVITAMDELIDTVINRMG 478 >gi|254496884|ref|ZP_05109732.1| flagellar basal body rod protein FlgB [Legionella drancourtii LLAP12] gi|254353903|gb|EET12590.1| flagellar basal body rod protein FlgB [Legionella drancourtii LLAP12] Length = 130 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 F I A + +QR S +A+N++N +T ++ V F++++ A Q++ + Sbjct: 9 FGIHAKALIGRDQRSSQLANNIANANTPRYKAQDVDFNDLLAAQMAGSSQQLETTS 64 >gi|77165840|ref|YP_344365.1| flagellar basal-body rod protein FlgC [Nitrosococcus oceani ATCC 19707] gi|254433209|ref|ZP_05046717.1| flagellar basal-body rod protein FlgC [Nitrosococcus oceani AFC27] gi|76884154|gb|ABA58835.1| Flagellar basal-body rod protein FlgC [Nitrosococcus oceani ATCC 19707] gi|207089542|gb|EDZ66813.1| flagellar basal-body rod protein FlgC [Nitrosococcus oceani AFC27] Length = 137 Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V P P+ + +G N NS+ EM MI ++ + + + Sbjct: 69 GVVESGAPLQQEYAPDHPMANEAGYIFHP------NVNSIEEMANMISASRNYENNVEMA 122 Query: 228 DENEKSMLEAIR 239 + +++ +L ++ Sbjct: 123 NTSKQLLLRTLQ 134 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I A A RL+T A N++N D+V +R + F+ ++ + Sbjct: 7 FDIAGTAMSAQTLRLNTTASNLANADSVSSSIDQTYRARQPVFATLLDKFNPEAPAGGVQ 66 Query: 59 V 59 V Sbjct: 67 V 67 >gi|144900468|emb|CAM77332.1| Flagellar basal-body rod protein FlgC [Magnetospirillum gryphiswaldense MSR-1] Length = 137 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 20/45 (44%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 G++ N N + EM M + + + +I+ + + + + + Sbjct: 91 GYVLAPNVNPLIEMMDMREAQRSYEANMNVINSSRQLLSRTVEML 135 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTD--------TVGFRTIKVKFSEVVGAIKNDID 53 Q + I ++ A +RL +++N++N D T ++ V F + Sbjct: 5 QKASKIAISGMKAQSERLRVISENLANADSLARTPDGTP-YKRKVVTFKSELDRANGYTG 63 Query: 54 QKISFV 59 K+ V Sbjct: 64 VKVDKV 69 >gi|90415320|ref|ZP_01223254.1| flagellar basal-body rod protein FlgC [marine gamma proteobacterium HTCC2207] gi|90332643|gb|EAS47813.1| flagellar basal-body rod protein FlgC [marine gamma proteobacterium HTCC2207] Length = 141 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQ 54 + F I +A A R+++ A NM+N TV F+ + F ++ + D Sbjct: 3 ISNIFGIAASAMNAQMVRMNSTASNMANAGTVSSSAEDAFKAKRPVFQALLQEHQLDQGS 62 Query: 55 KISFVASGKEYLSKEVGS--FISTGTEL 80 + + + + G L Sbjct: 63 QFLGGVKVLDMVDDTAPNKKMHDPGNPL 90 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 P PL D GF+ SN N + EM +M+ + + + +++ + M+ + Sbjct: 85 DPGNPLADKD------GFVFSSNVNEVTEMVEMMGAARSYQNNVEVVNTARELMMRTL 136 >gi|16802752|ref|NP_464237.1| flagellar basal body rod protein FlgB [Listeria monocytogenes EGD-e] gi|224501985|ref|ZP_03670292.1| flagellar basal body rod protein FlgB [Listeria monocytogenes FSL R2-561] gi|254830299|ref|ZP_05234954.1| flagellar basal body rod protein FlgB [Listeria monocytogenes 10403S] gi|284801040|ref|YP_003412905.1| flagellar basal body rod protein FlgB [Listeria monocytogenes 08-5578] gi|284994182|ref|YP_003415950.1| flagellar basal body rod protein FlgB [Listeria monocytogenes 08-5923] gi|16410099|emb|CAC98788.1| lmo0710 [Listeria monocytogenes EGD-e] gi|284056602|gb|ADB67543.1| flagellar basal body rod protein FlgB [Listeria monocytogenes 08-5578] gi|284059649|gb|ADB70588.1| flagellar basal body rod protein FlgB [Listeria monocytogenes 08-5923] Length = 133 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 L+ V++N++N +T F+ + F E +G+ Q + A + + Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESLGSSLRASGQNSAESAGNLTKTNTK 69 >gi|308175273|ref|YP_003921978.1| flagellar hook-filament junction [Bacillus amyloliquefaciens DSM 7] gi|307608137|emb|CBI44508.1| flagellar hook-filament junction [Bacillus amyloliquefaciens DSM 7] Length = 505 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVASGKEYLSK 68 A A + LSTV++N++N +T G+ +V A+ + D + +G + S Sbjct: 14 ALSAQQTALSTVSNNVANANTAGYTRQRVTLQSTSPYPAVSKNSDLTAGQIGTGVKAGSV 73 Query: 69 E 69 E Sbjct: 74 E 74 Score = 39.6 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 17/42 (40%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIAS 243 S + EM MI +N+ +I ++ + I + + Sbjct: 461 SAVSLDEEMTNMIQFQHAYNAAARIITMQDEIFDKIINGMGT 502 >gi|172057890|ref|YP_001814350.1| flagellar basal-body rod protein FlgC [Exiguobacterium sibiricum 255-15] gi|171990411|gb|ACB61333.1| flagellar basal-body rod protein FlgC [Exiguobacterium sibiricum 255-15] Length = 132 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 23/41 (56%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 G+++ N + + EM M+ T+ + + T ++ + +++A Sbjct: 87 GYVKMPNVDLLKEMVDMMGATRSYEANVTALNATKAMLVKA 127 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M + F+ A RL TV+ N++N T Sbjct: 3 MFSGFHTSATGLTAQRLRLDTVSANIANAQTT 34 >gi|229918624|ref|YP_002887270.1| flagellar basal-body rod protein FlgB [Exiguobacterium sp. AT1b] gi|229470053|gb|ACQ71825.1| flagellar basal-body rod protein FlgB [Exiguobacterium sp. AT1b] Length = 122 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN-DIDQKISFVASGKEYLSKEVGSFIST 76 ++ N+SN DT F+ + F + + + + ++ + + + G+ S Sbjct: 21 NQKVISHNLSNIDTPNFKAKQAVFEQTLQSEMRLKLQGGRPSDSTQSKVIDRAGGAMRSD 80 Query: 77 GTELDF 82 G +D Sbjct: 81 GNNVDL 86 >gi|94500248|ref|ZP_01306781.1| Flagellar hook-associated protein [Oceanobacter sp. RED65] gi|94427547|gb|EAT12524.1| Flagellar hook-associated protein [Oceanobacter sp. RED65] Length = 991 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M IG++ + L+ +N++N DT G+ +N Q ++ Sbjct: 1 MAGILEIGISGLRVHQTALTVTGNNIANVDTEGYSRQDAS-----IVSQNPQFQGGVWIG 55 Query: 61 SGKEYLS 67 G Sbjct: 56 GGARVDD 62 >gi|294013083|ref|YP_003546543.1| flagellar basal-body rod protein FlgB [Sphingobium japonicum UT26S] gi|292676413|dbj|BAI97931.1| flagellar basal-body rod protein FlgB [Sphingobium japonicum UT26S] Length = 122 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A QRLS +A N++N T G++ + F + + + V+ + + + Sbjct: 14 ALALRSQRLSLLASNIANASTPGYKARDIDFESALKEATTRQGKSPADVS---QAVDDAM 70 Query: 71 GSFISTGTELD 81 G + + LD Sbjct: 71 GYRVPLQSSLD 81 >gi|224437870|ref|ZP_03658817.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG 18818] gi|313144319|ref|ZP_07806512.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG 18818] gi|313129350|gb|EFR46967.1| flagellar basal body rod protein FlgC [Helicobacter cinaedi CCUG 18818] Length = 163 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM +I T+ + + + AI Sbjct: 123 NVNPVVEMADLIEATRAYQANVAAFQSAKNMASNAIT 159 Score = 41.2 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R++T++ N++N +T G +R +V F Sbjct: 3 LSSFDISGYGLSAQRVRVNTISSNIANANTTRTDEGGPYRRREVVFR 49 >gi|225375315|ref|ZP_03752536.1| hypothetical protein ROSEINA2194_00940 [Roseburia inulinivorans DSM 16841] gi|225212804|gb|EEG95158.1| hypothetical protein ROSEINA2194_00940 [Roseburia inulinivorans DSM 16841] Length = 146 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 +F+I + A R+ T+A+N++N +T G +R V F+E Sbjct: 5 QAFDISASGMTAERFRMDTIAENIANVNTTRTEDGTPYRRKIVTFAE 51 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 172 RENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 E I P P D + G++ N N++ EM +I ++ + + TT + Sbjct: 82 TETDFIMEYDPSNPDADEN------GYVSYPNVNTVTEMTNLIDASRAYEANTTAFEAA 134 >gi|192362305|ref|YP_001982402.1| flagellar basal body rod protein FlgC [Cellvibrio japonicus Ueda107] gi|190688470|gb|ACE86148.1| flagellar basal-body rod protein FlgC [Cellvibrio japonicus Ueda107] Length = 148 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM MI ++ F +++ K M++ + + Sbjct: 109 NVNPVEEMANMISASRSFQMNVEVMNSA-KQMVQRVLTLG 147 >gi|187918168|ref|YP_001883731.1| flagellar basal body rod protein FlgB [Borrelia hermsii DAH] gi|119861016|gb|AAX16811.1| flagellar basal-body rod protein FlgB [Borrelia hermsii DAH] Length = 135 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIKNDIDQKISFVASGKEYLS 67 L R S +ADN++N DT F+ KV F E+ AI N+ +S + ++L+ Sbjct: 15 LDVLSLRQSVIADNIANVDTPNFKRSKVTFEAELERAILNERASNLSLIRGNDKHLN 71 >gi|297618069|ref|YP_003703228.1| flagellar hook-associated protein FlgK [Syntrophothermus lipocalidus DSM 12680] gi|297145906|gb|ADI02663.1| flagellar hook-associated protein FlgK [Syntrophothermus lipocalidus DSM 12680] Length = 618 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 20/65 (30%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M IG A + + L N++N +T G+ + Q +S Sbjct: 4 MFLGLEIGRRAIMTQQTALDVTGHNVANANTEGYSRQVAVMVTTPAYHSPALTQNLSVGQ 63 Query: 61 SGKEY 65 G Sbjct: 64 IGTGV 68 >gi|242278628|ref|YP_002990757.1| flagellar basal-body rod protein FlgC [Desulfovibrio salexigens DSM 2638] gi|242121522|gb|ACS79218.1| flagellar basal-body rod protein FlgC [Desulfovibrio salexigens DSM 2638] Length = 147 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + EM MI +++ + + +D ++ A+R Sbjct: 108 NVVEEMVNMITISRSYEANAQAVDSAKRMFNRALR 142 Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE--VVGAIKNDIDQ 54 T+ +IG + A + L+ V+ NM+N T G +R V V+ + ++Q Sbjct: 5 TALDIGASGLKAQREYLNVVSMNMANAKTTRTAEGGPYRRKSVSMESSPVLSPFETAMNQ 64 Query: 55 KISFVASGKEY 65 +++ G Sbjct: 65 QLNQQLRGVTV 75 >gi|222530142|ref|YP_002574024.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor bescii DSM 6725] gi|222456989|gb|ACM61251.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor bescii DSM 6725] Length = 133 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 16/31 (51%) Query: 21 TVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +++N++N DT G++ + F + N Sbjct: 24 IISNNIANADTPGYKAKDLNFRAFLQRSLNQ 54 >gi|323527706|ref|YP_004229859.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1001] gi|323384708|gb|ADX56799.1| flagellar hook-associated protein FlgK [Burkholderia sp. CCGE1001] Length = 657 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M N+GL+ A + L+T N+SN T G+ F+E G + Q +S Sbjct: 1 MSNLINLGLSGLNAAQWGLTTTGQNISNASTPGYTIETPVFAETGGQYTGSGYLPQGVST 60 Query: 59 VASGKEYLSK 68 V ++Y Sbjct: 61 VTVTRQYSQY 70 >gi|188991644|ref|YP_001903654.1| flagellar basal body rod protein FlgB [Xanthomonas campestris pv. campestris str. B100] gi|167733404|emb|CAP51605.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 224 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEY 65 A EQR+ +A N+SN DT G++ + F + A + D + K Y Sbjct: 106 ALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKAAEGVRDGGLMQATDAKHY 160 >gi|153954739|ref|YP_001395504.1| hypothetical protein CKL_2121 [Clostridium kluyveri DSM 555] gi|219855203|ref|YP_002472325.1| hypothetical protein CKR_1860 [Clostridium kluyveri NBRC 12016] gi|146347597|gb|EDK34133.1| FlgK [Clostridium kluyveri DSM 555] gi|219568927|dbj|BAH06911.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 632 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 FN + A + ++ + N++N +T G+ + +V + + +G+ Sbjct: 8 FNTAKSGLFAQQTSINVTSHNIANAETEGYSRQRAT---LVTTTPYTMPSMNAATIAGQL 64 Query: 65 YLSKEVGSF 73 V S Sbjct: 65 GTGVTVASI 73 Score = 39.6 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 15/41 (36%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 S + EM +I + + +I ++ + I + Sbjct: 590 TSGVSLDEEMTNLIQFQHCYQANAKMISTVDELLDVVINGL 630 >gi|52841449|ref|YP_095248.1| flagellar basal body rod protein FlgC [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294161|ref|YP_126576.1| flagellar basal body rod protein FlgC [Legionella pneumophila str. Lens] gi|148358804|ref|YP_001250011.1| flagellar basal body rod protein FlgC [Legionella pneumophila str. Corby] gi|296106849|ref|YP_003618549.1| flagellar basal-body rod protein FlgC [Legionella pneumophila 2300/99 Alcoy] gi|52628560|gb|AAU27301.1| flagellar basal body rod protein FlgC [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53753993|emb|CAH15464.1| Flagellar basal-body rod protein FlgC [Legionella pneumophila str. Lens] gi|148280577|gb|ABQ54665.1| flagellar basal body rod protein FlgC [Legionella pneumophila str. Corby] gi|295648750|gb|ADG24597.1| flagellar basal-body rod protein FlgC [Legionella pneumophila 2300/99 Alcoy] gi|307609975|emb|CBW99504.1| flagellar basal-body rod protein FlgC [Legionella pneumophila 130b] Length = 140 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ SN N + EM +I ++ + L++ ++ M ++ Sbjct: 95 GFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQ 137 >gi|315121849|ref|YP_004062338.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495251|gb|ADR51850.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 134 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVV 45 S I + R+ +++N++N T G +R + F EV+ Sbjct: 7 SSQIANSGLTVQSSRMHVISENIANARTTGNTAGSDPYRRKTISFEEVM 55 >gi|160876197|ref|YP_001555513.1| flagellar hook-associated protein FlgK [Shewanella baltica OS195] gi|160861719|gb|ABX50253.1| flagellar hook-associated protein FlgK [Shewanella baltica OS195] gi|315268387|gb|ADT95240.1| flagellar hook-associated protein FlgK [Shewanella baltica OS678] Length = 641 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L ++N++N +T G+ S + + N ++V K Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVNDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RIYND 70 >gi|54297180|ref|YP_123549.1| flagellar basal body rod protein FlgC [Legionella pneumophila str. Paris] gi|53750965|emb|CAH12376.1| Flagellar basal-body rod protein FlgC [Legionella pneumophila str. Paris] Length = 140 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 GF+ SN N + EM +I ++ + L++ ++ M ++ Sbjct: 95 GFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQ 137 >gi|255305269|ref|ZP_05349441.1| flagellar basal-body rod protein [Clostridium difficile ATCC 43255] Length = 105 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 +++I A A R T+A+N++N +T G++ V F E + I++KI Sbjct: 1 MNTYDIIKMALDATNLRSQTIANNIANINTEGYKRHYVTFEETLNDAMPKIEEKI 55 >gi|254478858|ref|ZP_05092223.1| flagellar hook-associated protein FlgK [Carboxydibrachium pacificum DSM 12653] gi|214035220|gb|EEB75929.1| flagellar hook-associated protein FlgK [Carboxydibrachium pacificum DSM 12653] Length = 484 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 1/69 (1%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-DQKISFVAS 61 I ++ L N++N +T G+ V + + + DQ + Sbjct: 5 QGLEIAKTGLFVSQKALEVTGHNIANANTPGYTRQVVDMASIAPPTTFGMYDQWGKAIGE 64 Query: 62 GKEYLSKEV 70 G + + Sbjct: 65 GVKIVDIRQ 73 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 16/42 (38%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM M+ + + + +I ++ + I + Sbjct: 439 TSGVSLDEEMTNMLKYQKSYAACARVITAMDELIDTIINRMG 480 >gi|189426324|ref|YP_001953501.1| flagellar hook-associated protein FlgK [Geobacter lovleyi SZ] gi|189422583|gb|ACD96981.1| flagellar hook-associated protein FlgK [Geobacter lovleyi SZ] Length = 465 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFVASG 62 IG + V++N++N +T G+ ++ + N + ++ A Sbjct: 7 LQIGTTGMRVYQVATEVVSENIANVNTPGYSRQRIVLETAEASTHNGFPLGSGVNVAAVE 66 Query: 63 KEYLSKEVGSFIS 75 + Y + ++ Sbjct: 67 RYYDALLQKQLVN 79 Score = 36.6 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 5/39 (12%), Positives = 15/39 (38%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +S + E+ ++ + + + LI + A+ Sbjct: 424 NSGVSLDEELTDLMKYQRSYQACAKLITTAGDMLDIAVN 462 >gi|90021857|ref|YP_527684.1| flagellar basal body rod protein FlgC [Saccharophagus degradans 2-40] gi|89951457|gb|ABD81472.1| flagellar basal-body rod protein FlgC [Saccharophagus degradans 2-40] Length = 144 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 7/75 (9%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V + P P D G++ N N + EM MI ++ F ++ Sbjct: 76 GIVESDAPLQRRYEPGHPQADEE------GYVHYPNVNIVEEMANMISASRSFQMNVEVM 129 Query: 228 DENEKSMLEAIRNIA 242 + K M++ + + Sbjct: 130 NSA-KQMVQRVLQLG 143 Score = 35.4 bits (81), Expect = 7.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDT------VGFRTIKVKFSEVVGAIKND 51 F+ + A RL+T A N++N +T +R F+ V Sbjct: 7 FDTAGSGMNAQSVRLNTTASNIANAETASSSADTVYRGRHPVFATVQAGYMQG 59 >gi|239826611|ref|YP_002949235.1| flagellar basal body rod protein FlgC [Geobacillus sp. WCH70] gi|239806904|gb|ACS23969.1| flagellar basal-body rod protein FlgC [Geobacillus sp. WCH70] Length = 150 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM ++ T+ + + T+ + + +++A+ Sbjct: 105 GYVRLPNVDPLKEMVDLMSATRSYEANVTVFNATKGMLMKAL 146 Score = 43.1 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 17/85 (20%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKVK-------FSEVV 45 S +I +A A R+ ++ NM+N DT G +R V FS + Sbjct: 5 QSLDITASALTAQRLRMDVISSNMANVDTTHARLVNGQWEPYRRKFVVMEPRQEGFSTYL 64 Query: 46 GAIKNDIDQKISFVASGKEYLSKEV 70 A N + V K + Sbjct: 65 QAAMNSRSSVGNGVRVTKIMEDQTP 89 >gi|34498334|ref|NP_902549.1| flagellar hook-associated protein 1 [Chromobacterium violaceum ATCC 12472] gi|34104188|gb|AAQ60547.1| flagellar hook-associated protein 1 [Chromobacterium violaceum ATCC 12472] Length = 595 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F IGL+ + LS ++N+SN +T G+ + A + ++ ++ G + Sbjct: 9 FGIGLSGLNVAQNALSVTSNNISNVNTPGYNA-----QYMTQAGRTPVNAGFGYLGQGVD 63 Query: 65 YLS 67 S Sbjct: 64 ATS 66 >gi|229826300|ref|ZP_04452369.1| hypothetical protein GCWU000182_01672 [Abiotrophia defectiva ATCC 49176] gi|229789170|gb|EEP25284.1| hypothetical protein GCWU000182_01672 [Abiotrophia defectiva ATCC 49176] Length = 147 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N++ EM MI T+ + + T + + +L+A+ Sbjct: 106 NVNTVQEMTDMIDATRSYEANVTAFNATKNMILKAL 141 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 + +I A + R +A N++N +T G +R V F+E Sbjct: 6 AMDISATGMTAQQLRTDVIAQNIANINTTRDQNGNVYRRKNVVFTE 51 >gi|16078682|ref|NP_389501.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp. subtilis str. 168] gi|221309494|ref|ZP_03591341.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp. subtilis str. 168] gi|221313819|ref|ZP_03595624.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318743|ref|ZP_03600037.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323014|ref|ZP_03604308.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp. subtilis str. SMY] gi|321315385|ref|YP_004207672.1| flagellar basal body rod protein FlgC [Bacillus subtilis BSn5] gi|120294|sp|P24501|FLGC_BACSU RecName: Full=Flagellar basal-body rod protein flgC gi|142916|gb|AAA22442.1| flgC [Bacillus subtilis] gi|2633991|emb|CAB13492.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus subtilis subsp. subtilis str. 168] gi|320021659|gb|ADV96645.1| flagellar basal body rod protein FlgC [Bacillus subtilis BSn5] Length = 150 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM ++ T+ + + T ++ + +++A+ Sbjct: 105 GYVQKPNVDPLKEMVDLVSSTRSYEANVTAMNATKGMLMKAL 146 Score = 43.9 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 21/110 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKV-------KFSEVVG 46 S N+ +A A R+ V+ N++N DT G +R V FS ++ Sbjct: 6 SLNVSASALTAQRVRMDVVSSNLANMDTTRAKQVNGEWVPYRRKMVSLQSKGESFSSILN 65 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + + + V K + + D + + ++ P Sbjct: 66 SQMSGSGNAGNGVKVSKITEDDSDFNLVY--DPTDPDANAEGY--VQKPN 111 >gi|304409972|ref|ZP_07391591.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183] gi|307302315|ref|ZP_07582073.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175] gi|304351381|gb|EFM15780.1| flagellar hook-associated protein FlgK [Shewanella baltica OS183] gi|306914353|gb|EFN44774.1| flagellar hook-associated protein FlgK [Shewanella baltica BA175] Length = 641 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L ++N++N +T G+ S + + N ++V K Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVNDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RIYND 70 >gi|296330833|ref|ZP_06873308.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674351|ref|YP_003866023.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus subtilis subsp. spizizenii str. W23] gi|296151838|gb|EFG92712.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412595|gb|ADM37714.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus subtilis subsp. spizizenii str. W23] Length = 150 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM ++ T+ + + T ++ + +++A+ Sbjct: 105 GYVQKPNVDPLKEMVDLVSSTRSYEANVTAMNATKGMLMKAL 146 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 21/110 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKV-------KFSEVVG 46 S N+ +A A R+ V+ N++N DT G +R V FS ++ Sbjct: 6 SLNVSASALTAQRVRMDVVSSNLANMDTTRAKQVNGEWMPYRRKMVSLQSKGESFSSILN 65 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + + + V K + + D + + ++ P Sbjct: 66 SQMSGSGNAGNGVKVSKITEDDSEFNLVY--DPTDPDANAEGY--VQKPN 111 >gi|90418393|ref|ZP_01226305.1| flagellar basal-body rod protein flgC [Aurantimonas manganoxydans SI85-9A1] gi|90338065|gb|EAS51716.1| flagellar basal-body rod protein flgC [Aurantimonas manganoxydans SI85-9A1] Length = 138 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 16/102 (15%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKNDIDQ 54 +S I + A R+ V++N++N T G ++ V F + + Sbjct: 6 LSSLKIAASGLQAQSTRMRIVSENIANAQTTGTTPGSDPYQRKMVSFQSELDRVSGAQMV 65 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + V E G A D + ++ P Sbjct: 66 SVDKVGRDDTPFILESDP----GNP---AANADGY--VKMPN 98 Score = 37.7 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Query: 171 RRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDEN 230 R + I + P P + G+++ N + EM M + + + ++ + Sbjct: 72 RDDTPFILESDPGNPAANAD------GYVKMPNVRMLVEMADMREANRSYEANIQVVKQA 125 Query: 231 EKSMLEAIRNIAS 243 + + I + S Sbjct: 126 REIINMTIDLLRS 138 >gi|254973909|ref|ZP_05270381.1| flagellar basal-body rod protein [Clostridium difficile QCD-66c26] gi|255091295|ref|ZP_05320773.1| flagellar basal-body rod protein [Clostridium difficile CIP 107932] gi|255312953|ref|ZP_05354536.1| flagellar basal-body rod protein [Clostridium difficile QCD-76w55] gi|255515712|ref|ZP_05383388.1| flagellar basal-body rod protein [Clostridium difficile QCD-97b34] gi|255648806|ref|ZP_05395708.1| flagellar basal-body rod protein [Clostridium difficile QCD-37x79] gi|260682025|ref|YP_003213310.1| flagellar basal-body rod protein [Clostridium difficile CD196] gi|260685623|ref|YP_003216756.1| flagellar basal-body rod protein [Clostridium difficile R20291] gi|306518921|ref|ZP_07405268.1| flagellar basal-body rod protein [Clostridium difficile QCD-32g58] gi|260208188|emb|CBA60522.1| flagellar basal-body rod protein [Clostridium difficile CD196] gi|260211639|emb|CBE01890.1| flagellar basal-body rod protein [Clostridium difficile R20291] Length = 105 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 +++I A R T+A+N++N +T G++ V F E + Sbjct: 1 MNTYDIIKMGLDATNLRSQTIANNIANINTEGYKRHYVTFEETL 44 >gi|289208112|ref|YP_003460178.1| flagellar basal-body rod protein FlgC [Thioalkalivibrio sp. K90mix] gi|288943743|gb|ADC71442.1| flagellar basal-body rod protein FlgC [Thioalkalivibrio sp. K90mix] Length = 139 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKI 56 FN +A A RL+TVA N++N +TV +R +V F V+ + Sbjct: 6 NLFNTSASALTAQSVRLNTVASNLANANTVATNPDEAYRAKQVLFQTVMNQADPNGASNG 65 Query: 57 SFVAS 61 VA Sbjct: 66 VRVAG 70 Score = 40.4 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 3/35 (8%), Positives = 18/35 (51%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + + EM M+ ++ + + +++ + + + ++ Sbjct: 101 SVVEEMANMMSASRNYEANVEVMETSRQLLQRTLQ 135 >gi|170722895|ref|YP_001750583.1| flagellar basal body rod protein FlgB [Pseudomonas putida W619] gi|169760898|gb|ACA74214.1| flagellar basal-body rod protein FlgB [Pseudomonas putida W619] Length = 136 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 4/68 (5%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + FS V+ A Sbjct: 1 MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFSSVLAAESQKQQSGG 60 Query: 57 SFVASGKE 64 F Sbjct: 61 RFAMDRTN 68 >gi|51598554|ref|YP_072742.1| flagellar basal body rod protein FlgB [Borrelia garinii PBi] gi|51573125|gb|AAU07150.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 135 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIKNDIDQKISFVASGKEYLS 67 L R ++DN++N DT F+ ++ F E+ A N +S + S ++LS Sbjct: 15 LDVLSLRQGVISDNIANVDTPNFKRSRISFESELEKAFLNKGKNDLSLIKSSDKHLS 71 >gi|126175140|ref|YP_001051289.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155] gi|125998345|gb|ABN62420.1| flagellar hook-associated protein FlgK [Shewanella baltica OS155] Length = 641 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L ++N++N +T G+ S + + N ++V K Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVNDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RIYND 70 >gi|302343763|ref|YP_003808292.1| flagellar hook-associated protein FlgK [Desulfarculus baarsii DSM 2075] gi|301640376|gb|ADK85698.1| flagellar hook-associated protein FlgK [Desulfarculus baarsii DSM 2075] Length = 574 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 21/115 (18%) Query: 141 NVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVK----- 195 +G+ GE+S KG A + + + S + ++ N G T+ Sbjct: 460 RIGDDGELS-KGDNTAALDIADLKDSDSML---GDTVTYNESLISWAASLGTTISNATDS 515 Query: 196 -------RGFLE-----DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 LE S + EM +MI + + +I +++ + I Sbjct: 516 YSFATETTSSLENLRDSMSGVSLDEEMVRMIQFQRSYQMAAQMIQVSDELLQTLI 570 Score = 41.6 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A A +L V+ N++N +T G+ V A +N + +G + + Sbjct: 14 ALNASVDQLDVVSHNVANVNTPGYSRQVA-----VLATRNPQYSSKGYFGNGVQTTTVMQ 68 >gi|120598238|ref|YP_962812.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1] gi|120558331|gb|ABM24258.1| flagellar hook-associated protein FlgK [Shewanella sp. W3-18-1] Length = 641 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV 44 NI LA + +L ++N++N +T G+ S + Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTL 45 >gi|117919778|ref|YP_868970.1| flagellar hook-associated protein FlgK [Shewanella sp. ANA-3] gi|117612110|gb|ABK47564.1| flagellar hook-associated protein FlgK [Shewanella sp. ANA-3] Length = 641 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 NI LA + +L ++N++N +T G+ S + + Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGT 59 >gi|254511648|ref|ZP_05123715.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium KLH11] gi|221535359|gb|EEE38347.1| flagellar basal-body rod protein FlgC [Rhodobacteraceae bacterium KLH11] Length = 128 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV---------VGAIKNDIDQ 54 S +A A RL V++N+SN DT G+R V F V VG +K D Sbjct: 7 SLTASASALRAQAARLRHVSENISNADTPGYRRKTVPFETVKRGGAELVQVGHVKLDRRD 66 Query: 55 KISFVASGKEYLSKEVGSFISTGTELDFALE 85 G E G + G+ +D +E Sbjct: 67 PGQIYDPGHPMAD-EAGYYR--GSNVDLMIE 94 Score = 39.3 bits (91), Expect = 0.53, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 P P+ D + G+ SN + M E+ + + + + D+ + Sbjct: 72 DPGHPMADEA------GYYRGSNVDLMIEIADAREAQRSYEANLKMFDQTRQM 118 >gi|317492430|ref|ZP_07950859.1| flagellar basal-body rod protein FlgC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919769|gb|EFV41099.1| flagellar basal-body rod protein FlgC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 134 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 22/82 (26%) Query: 180 NIPPTPLEDLSGVTVKR----------------------GFLEDSNANSMYEMGQMIHLT 217 + P ++ GV V + G++ N + + EM I + Sbjct: 50 EVQAAPGQETGGVKVSQLVDDPSPERLVYQPGNPLADAKGYVRMPNVDVVGEMVNSIAAS 109 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + + + +++ + M++ + Sbjct: 110 RSYQANVEVLNTTKSLMMKTLT 131 Score = 40.0 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 12/87 (13%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQ 54 M F+I +A A QR++ A NM+N G +R +V F ++ Q Sbjct: 3 MLNIFDISGSALAAQSQRMNVAASNMANADSVTGPDGEPYRAKQVVFE-----VQAAPGQ 57 Query: 55 KISFVASGKEYLSKEVGSFI-STGTEL 80 + V + + G L Sbjct: 58 ETGGVKVSQLVDDPSPERLVYQPGNPL 84 >gi|255099412|ref|ZP_05328389.1| flagellar basal-body rod protein [Clostridium difficile QCD-63q42] Length = 105 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 +++I A R T+A+N++N +T G++ V F E + Sbjct: 1 MNTYDIIKMGLDATNLRSQTIANNIANINTEGYKRHYVTFEETL 44 >gi|217972604|ref|YP_002357355.1| flagellar hook-associated protein FlgK [Shewanella baltica OS223] gi|217497739|gb|ACK45932.1| flagellar hook-associated protein FlgK [Shewanella baltica OS223] Length = 641 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L ++N++N +T G+ S + + N ++V K Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGNSFYGTGTYVNDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RIYND 70 >gi|291484170|dbj|BAI85245.1| flagellar basal body rod protein FlgC [Bacillus subtilis subsp. natto BEST195] Length = 150 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 24/42 (57%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM ++ T+ + + T ++ + +++A+ Sbjct: 105 GYVQKPNVDPLKEMVDLVSSTRSYEANVTAMNATKGMLMKAL 146 Score = 44.6 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 21/110 (19%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKV-------KFSEVVG 46 S N+ +A A R+ V+ N++N DT G +R V FS ++ Sbjct: 6 SLNVSASALTAQRVRMDVVSSNLANMDTTRAKQVNGEWVPYRRKMVSLQSKGESFSSILN 65 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPR 96 + + + V K + + D D + ++ P Sbjct: 66 SQMSGSGNAGNGVKVSKITEDDSDFNLVY--DPTDPDANADGY--VQKPN 111 >gi|217059|dbj|BAA02862.1| FlgC [Salmonella enterica subsp. enterica serovar Typhimurium] gi|581758|emb|CAA36310.1| unnamed protein product [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 134 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 12/90 (13%) Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 G+ + + SV SQ + P PL D + G+++ N + + E Sbjct: 54 APGQATGGVKVASVIESQAPEK------LVYEPGNPLADAN------GYVKMPNVDVVGE 101 Query: 210 MGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 M + ++ + + +++ + ML+ + Sbjct: 102 MVNTMSASRTYQANIEVLNTVKSMMLKTLT 131 Score = 36.6 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A +RL+ A N++N G +R +V F V A Sbjct: 4 LNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQ--VDAAPGQATGG 61 Query: 56 ISFVAS 61 + + Sbjct: 62 VKVASV 67 >gi|320173527|gb|EFW48723.1| Flagellar basal-body rod protein FlgC [Shigella dysenteriae CDC 74-1112] Length = 134 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ + S E + + +G+++ Sbjct: 36 GPDGQPYRAKQVVFQVN-AAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 95 NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 35.8 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F+I +A A QRL+ A N++N G +R +V F Sbjct: 4 LNIFDIAGSALTAQFQRLNVAASNLANADSVTGPDGQPYRAKQVVFQ 50 >gi|311694359|gb|ADP97232.1| flagellar basal-body rod protein FlgC-like protein [marine bacterium HP15] Length = 149 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM M+ ++ F +++ KSM++ I + Sbjct: 109 NVNVVEEMADMMSSSRSFQMNVDVMNTA-KSMMQRILTLG 147 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDT----VG--FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I + A RL+T A N++N +T G +R K FS + ++ N + Sbjct: 7 FDIAGSGMTAQSLRLNTTASNIANAETASSSTGETYRARKPVFSAIQQSLMNPGQGGLPM 66 Query: 59 VASGKEYLSKEVGSFISTGTEL 80 A V + + EL Sbjct: 67 AADEGPGAGVRVDGIVESDAEL 88 >gi|78042758|ref|YP_359838.1| flagellar basal-body rod protein FlgC [Carboxydothermus hydrogenoformans Z-2901] gi|77994873|gb|ABB13772.1| flagellar basal-body rod protein FlgC [Carboxydothermus hydrogenoformans Z-2901] Length = 138 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 +SF I +A A L T+ DN++N +T G + V F E++ A + Sbjct: 5 SSFQITASALTAHRLWLDTIVDNIANANTTRTPAGGTYNRKDVIFEEILEAKAGFKGGGV 64 Query: 57 SFVA 60 Sbjct: 65 RVSQ 68 Score = 39.3 bits (91), Expect = 0.50, Method: Composition-based stats. Identities = 5/36 (13%), Positives = 16/36 (44%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N E+ ++ + + + T+ + + +A+ Sbjct: 99 NVNINDEIVNLLAAQRAYEANVTVFNTAKAMYAKAL 134 >gi|92114092|ref|YP_574020.1| flagellar hook-associated protein [Chromohalobacter salexigens DSM 3043] gi|91797182|gb|ABE59321.1| Flagellar hook-associated protein [Chromohalobacter salexigens DSM 3043] Length = 539 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 + F+IGL+ A + LST ++N+SN T G+ E + V Sbjct: 1 MSIFSIGLSGLSAAQSALSTTSNNLSNVYTEGYNRQLTILGESYSNGSTGTGVSVDEVQ 59 >gi|260892170|ref|YP_003238267.1| flagellar hook-associated protein FlgK [Ammonifex degensii KC4] gi|260864311|gb|ACX51417.1| flagellar hook-associated protein FlgK [Ammonifex degensii KC4] Length = 570 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 L A +A+++ + T A N++N T G+ +V E+ + I + A G+ Sbjct: 7 GLETTLRALMAMQRSMETAAHNIANASTPGYSRQRV---ELAASSAYTIPSVLRPAAPGQ 63 >gi|241765797|ref|ZP_04763738.1| flagellar hook-associated protein FlgK [Acidovorax delafieldii 2AN] gi|241364308|gb|EER59458.1| flagellar hook-associated protein FlgK [Acidovorax delafieldii 2AN] Length = 664 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 + N+G A LA + L T N++N +T G+ V V G Sbjct: 1 MSLLNVGARALLANQVALQTAGHNIANVNTPGYSRQTVVLQTVQGQFTGG 50 >gi|188576753|ref|YP_001913682.1| flagellar basal body rod protein FlgB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576944|ref|YP_001913873.1| flagellar basal body rod protein FlgB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521205|gb|ACD59150.1| flagellar basal-body rod protein FlgB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521396|gb|ACD59341.1| flagellar basal-body rod protein FlgB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 117 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 EQR+ +A N+SN DT G++ + F + + + + D + K Y G Sbjct: 1 MALREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSAQGEQDGGLMQTTDAKHYAVGGGG 60 >gi|292492360|ref|YP_003527799.1| flagellar basal-body rod protein FlgB [Nitrosococcus halophilus Nc4] gi|291580955|gb|ADE15412.1| flagellar basal-body rod protein FlgB [Nitrosococcus halophilus Nc4] Length = 133 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A +R +A N++N DT G++ + F + + Sbjct: 1 MSISFDSALGIHPYALSLWSRRAELLAANLANADTPGYKARDIDFKTALQQAQGQGAALP 60 Query: 57 SFVASGKEYLS 67 V G+ S Sbjct: 61 LQVTHGRHLPS 71 >gi|319427083|gb|ADV55157.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens 200] Length = 641 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV 44 NI LA + +L ++N++N +T G+ S + Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTL 45 >gi|311280019|ref|YP_003942250.1| flagellar basal-body rod protein FlgC [Enterobacter cloacae SCF1] gi|308749214|gb|ADO48966.1| flagellar basal-body rod protein FlgC [Enterobacter cloacae SCF1] Length = 134 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ N S + + + +G++ Sbjct: 36 GPDGQPYRAKQVVFQVD-APIGAATGGVKVANVVESQAPDKLVFQPGNPLADAKGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 95 NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 35.8 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 + F++ +A A +RL+ A N++N G +R +V F + I Sbjct: 4 LSIFDVAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQ-----VDAPIGAA 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V S+ + G L Sbjct: 59 TGGVKVANVVESQAPDKLVFQPGNPL 84 >gi|270262395|ref|ZP_06190666.1| flagellar hook-associated protein FlgK [Serratia odorifera 4Rx13] gi|270043079|gb|EFA16172.1| flagellar hook-associated protein FlgK [Serratia odorifera 4Rx13] Length = 548 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M S N ++ A + LSTV++N+SN + G+ + A + F+ Sbjct: 1 MSNSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTA-----ILAQNGGMSTMSGFI 55 Query: 60 ASGKEYLS 67 +G S Sbjct: 56 GNGVTVTS 63 >gi|237751239|ref|ZP_04581719.1| flagellar basal body rod protein FlgC [Helicobacter bilis ATCC 43879] gi|229372605|gb|EEO22996.1| flagellar basal body rod protein FlgC [Helicobacter bilis ATCC 43879] Length = 163 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 18/45 (40%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 +G++ N N + EM ++ T+ + + + AI Sbjct: 115 AQGYVAYPNVNPVVEMADLVEATRAYQANVAAFQSAKNMASNAIT 159 Score = 40.0 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 ++F+I A R++ ++ N++N +T G +R +V F Sbjct: 3 MSTFDISGYGLSAQRVRVNVISANIANANTTRTDEGGPYRRQEVVFR 49 >gi|121596124|ref|YP_988020.1| flagellar hook-associated protein FlgK [Acidovorax sp. JS42] gi|120608204|gb|ABM43944.1| flagellar hook-associated protein FlgK [Acidovorax sp. JS42] Length = 691 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + N+G A LA + L T N++N T G+ V V G ++ + Sbjct: 1 MSLLNVGARALLANQVALQTTGHNIANVSTAGYSRQNVGMETVQGQF-----TGSGYIGN 55 Query: 62 GKEYLS 67 G + + Sbjct: 56 GVQVAT 61 Score = 35.0 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 15/41 (36%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S N E ++I Q + + ++ + I+ + Sbjct: 650 SGVNLDEEAARLIQYQQAYQASAKMLQIAQNIFDNLIQTMG 690 >gi|224825775|ref|ZP_03698879.1| flagellar basal-body rod protein FlgC [Lutiella nitroferrum 2002] gi|224601999|gb|EEG08178.1| flagellar basal-body rod protein FlgC [Lutiella nitroferrum 2002] Length = 140 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM M+ ++ F + ++ K+M + + + Sbjct: 100 NVNPVEEMTDMMSASRAFQTNVEVL-ARVKTMQQDLLKLG 138 Score = 36.6 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDT------VGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 I +A A RL+TVA N++N ++ FR K F+ V +D + + V Sbjct: 9 IAGSAMTAQTVRLNTVASNLANAESASGSEGAAFRARKPVFATVYRGADSDGAWQGASVQ 68 Query: 61 SGKEYLSKEV 70 S Sbjct: 69 VLDVVKSDSP 78 >gi|154250381|ref|YP_001411206.1| flagellar basal-body rod protein FlgB [Fervidobacterium nodosum Rt17-B1] gi|154154317|gb|ABS61549.1| flagellar basal-body rod protein FlgB [Fervidobacterium nodosum Rt17-B1] Length = 131 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 1 MQTS-----FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK 55 M S F+ A +R A N++N +T G++ + F E + K + Sbjct: 1 MDNSIFNSNFDTLKTALDVQMKRQEIHAQNIANAETPGYKRKYIAFEEYLQESKMKLQMA 60 Query: 56 IS 57 + Sbjct: 61 RT 62 >gi|126668555|ref|ZP_01739509.1| flagellar basal-body rod protein B [Marinobacter sp. ELB17] gi|126626960|gb|EAZ97603.1| flagellar basal-body rod protein B [Marinobacter sp. ELB17] Length = 136 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A A QR +A+N++N DT GF+ + F ++ +++ + ++++ Sbjct: 15 ALQARVQRAEILANNLANADTPGFKARDIDFQAIMKRAQSNA-SGFGMNTTNSGHITEGG 73 Query: 71 GS 72 G+ Sbjct: 74 GA 75 >gi|47091673|ref|ZP_00229469.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes str. 4b H7858] gi|226223341|ref|YP_002757448.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes Clip81459] gi|254824010|ref|ZP_05229011.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL J1-194] gi|47019992|gb|EAL10729.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes str. 4b H7858] gi|225875803|emb|CAS04506.1| Putative flagellar basal-body rod protein FlgB [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593238|gb|EFG00999.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL J1-194] gi|328467275|gb|EGF38355.1| flagellar basal body rod protein FlgB [Listeria monocytogenes 1816] Length = 133 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 L+ V++N++N +T F+ + F E G+ Q + A + + Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESFGSSLRASGQNSTESAGNLTKTNTK 69 >gi|219684621|ref|ZP_03539564.1| flagellar basal-body rod protein FlgB [Borrelia garinii PBr] gi|219671983|gb|EED29037.1| flagellar basal-body rod protein FlgB [Borrelia garinii PBr] Length = 135 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIKNDIDQKISFVASGKEYLS 67 L R S ++DN++N DT F+ K+ F E+ A N +S + S ++LS Sbjct: 15 LDVLSLRQSVISDNIANVDTPNFKRSKISFESELEKAFSNKGKNDLSLIKSSDKHLS 71 >gi|146293684|ref|YP_001184108.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens CN-32] gi|145565374|gb|ABP76309.1| flagellar hook-associated protein FlgK [Shewanella putrefaciens CN-32] Length = 641 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 19/40 (47%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV 44 NI LA + +L ++N++N +T G+ S + Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTL 45 >gi|170682563|ref|YP_001744106.1| flagellar basal body rod protein FlgC [Escherichia coli SMS-3-5] gi|170520281|gb|ACB18459.1| flagellar basal-body rod protein FlgC [Escherichia coli SMS-3-5] Length = 134 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ + S E + + +G+++ Sbjct: 36 GPDGQPYRAKQVVFQVN-AAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 95 NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.6 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDT-VG-----FRTIKVKFS 42 F+I +A A QRL+ A N++N D+ G +R +V F Sbjct: 4 LNIFDIAGSALTAQSQRLNVAASNLANADSLTGPDGQPYRAKQVVFQ 50 >gi|327441344|dbj|BAK17709.1| flagellar hook-associated protein [Solibacillus silvestris StLB046] Length = 562 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 18/39 (46%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM MI Q +N+ +I ++++ + I + Sbjct: 520 VSLDEEMTNMITFQQAYNANARMITVIDETLDKIINGMG 558 Score = 40.8 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 4/73 (5%) Query: 2 QTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 S +GL + L T N+SN +T+G+ +V G ++ + Sbjct: 1 MRSTFMGLEASKRGLYTQQSALYTTGHNISNANTLGYSRQRVNMETTPGFPGAGLNSGKT 60 Query: 58 FVASGKEYLSKEV 70 G + V Sbjct: 61 AGHIGTGVQASSV 73 >gi|118474843|ref|YP_891880.1| flagellar basal body rod protein FlgC [Campylobacter fetus subsp. fetus 82-40] gi|118414069|gb|ABK82489.1| flagellar basal-body rod protein FlgC [Campylobacter fetus subsp. fetus 82-40] Length = 164 Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 22/100 (22%) Query: 161 YSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTV----------------------KRGF 198 S++ F++ EN P+ P P L V V +G+ Sbjct: 60 KSINSKNDFLKNENPLNDPDAPEFPKPALMSVVVDKIVRDDKDFKLKYDPTHPDADAKGY 119 Query: 199 LEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 + N N + EM +I T+ + + + + AI Sbjct: 120 IMLPNINPVIEMADLIEATRAYQANVSAFQSAKSIATSAI 159 Score = 42.0 bits (98), Expect = 0.076, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 6/40 (15%) Query: 11 AQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEV 44 A R++ ++ N++N +T G +R +V F + Sbjct: 13 GLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAI 52 >gi|304404242|ref|ZP_07385904.1| flagellar basal-body rod protein FlgC [Paenibacillus curdlanolyticus YK9] gi|304347220|gb|EFM13052.1| flagellar basal-body rod protein FlgC [Paenibacillus curdlanolyticus YK9] Length = 149 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + EM MI ++ + + T ++ + +A+ Sbjct: 104 GYVSMPNVDIAKEMIDMISASRSYEANITALNATKGMFAKAL 145 Score = 40.4 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 17/76 (22%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV--GF---------RTIKV------KFSEVV 45 F+ +A A R+ ++ N++N +T G+ R + V FS+V+ Sbjct: 5 NGFDANASALTAQRLRMDVISSNIANAETTRAGYVNGKFVPYTRKMVVMEPANKSFSDVL 64 Query: 46 GAIKNDIDQKISFVAS 61 N + Sbjct: 65 SGQMNGTAANPGVKVT 80 >gi|157146228|ref|YP_001453547.1| flagellar basal body rod protein FlgC [Citrobacter koseri ATCC BAA-895] gi|157083433|gb|ABV13111.1| hypothetical protein CKO_01985 [Citrobacter koseri ATCC BAA-895] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D + G+++ N + + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAN------GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.2 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F+I +A A +RL+ A N++N G +R +V F Sbjct: 4 LNIFDIAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQ 50 >gi|83594184|ref|YP_427936.1| hypothetical protein Rru_A2852 [Rhodospirillum rubrum ATCC 11170] gi|83577098|gb|ABC23649.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 727 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 18/31 (58%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGF 34 + + G++ ++ L V+ N++N +T G+ Sbjct: 6 ALSAGISGLQTAQKGLDLVSHNLANINTPGY 36 >gi|227820856|ref|YP_002824826.1| flagellar basal body rod protein FlgC [Sinorhizobium fredii NGR234] gi|227339855|gb|ACP24073.1| flagellar basal-body rod protein FlgC [Sinorhizobium fredii NGR234] Length = 139 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 6/87 (6%) Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 + S+ Q ++ P P D G ++ N N + EM Sbjct: 52 AAEVDRASGASLVEVQRLGTDDSDFSIEFDPGNPAADEK------GMVKMPNVNVLIEMA 105 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 M + + + + ++ + + I Sbjct: 106 DMREANRAYEANLQTVKQSRDLISQTI 132 Score = 36.9 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKN 50 ++ + + A RL V++N++N + G +R + F+ V Sbjct: 6 SALKVSASGLQAESTRLRIVSENIANARSTGDVPGADPYRRKTISFAAEVDRASG 60 >gi|261339374|ref|ZP_05967232.1| flagellar basal-body rod protein FlgC [Enterobacter cancerogenus ATCC 35316] gi|288318175|gb|EFC57113.1| flagellar basal-body rod protein FlgC [Enterobacter cancerogenus ATCC 35316] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D + G+++ N + + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAN------GYVKMPNVDVVGEMVNSMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 37.3 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A +RL+ A N++N D+V +R +V F K Sbjct: 4 LNIFDIAGSALTAQSKRLNVAASNLANADSVAGPDGQPYRAKQVVFQVDAAPGAATGGVK 63 Query: 56 ISFVASGK 63 +S V + Sbjct: 64 VSDVVESQ 71 >gi|190891944|ref|YP_001978486.1| flagellar basal body rod protein [Rhizobium etli CIAT 652] gi|190697223|gb|ACE91308.1| probable flagellar basal body rod protein [Rhizobium etli CIAT 652] Length = 100 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGF 34 NI L+ A R+ +A+N++N+ T G+ Sbjct: 8 NIALSGMRAQATRIGAIANNVANSSTSGY 36 >gi|255022491|ref|ZP_05294477.1| flagellar basal body rod protein FlgB [Listeria monocytogenes FSL J1-208] Length = 133 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 L+ V++N++N +T F+ + F E +G+ Q + G Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESLGSSLRASGQN----------SIESAG 61 Query: 72 SFISTG 77 + T Sbjct: 62 NLTKTN 67 >gi|238785499|ref|ZP_04629482.1| Flagellar basal-body rod protein flgC [Yersinia bercovieri ATCC 43970] gi|238799105|ref|ZP_04642561.1| Flagellar basal-body rod protein flgC [Yersinia mollaretii ATCC 43969] gi|238713601|gb|EEQ05630.1| Flagellar basal-body rod protein flgC [Yersinia bercovieri ATCC 43970] gi|238717052|gb|EEQ08912.1| Flagellar basal-body rod protein flgC [Yersinia mollaretii ATCC 43969] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + G VR P + + + +G++ Sbjct: 36 GPDGQPYRAKQVVFQVA-AQPGQETGGVRVSQVVDDPAPDRLVFQPGNPLADAKGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + EM I ++ + + +++ + ML+ + Sbjct: 95 NVDVTGEMVNTISASRSYQANVEVLNTTKSLMLKTLT 131 Score = 38.5 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A NM+N G +R +V F + Q+ Sbjct: 4 LNIFDIAGSALSAQSQRLNVSASNMANADSVTGPDGQPYRAKQVVFQ-----VAAQPGQE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V + + G L Sbjct: 59 TGGVRVSQVVDDPAPDRLVFQPGNPL 84 >gi|197120201|ref|YP_002140628.1| flagellar basal body rod protein FlgC [Geobacter bemidjiensis Bem] gi|197089561|gb|ACH40832.1| flagellar basal body rod protein FlgC [Geobacter bemidjiensis Bem] Length = 145 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI ++ + + T ++ L+ + Sbjct: 106 NINVVEEMADMITASRSYEANITATQASKSMALKTL 141 Score = 42.0 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 TS +I A A R++ ++ N++N ++ G +R F+ + Sbjct: 5 TSMDISATALAAERTRMNLISSNLANVNSTRTAEGGPYRRKDAVFTATPLKEGASFGAAL 64 Query: 57 SFVASGKEYLSKEV 70 S S + ++ Sbjct: 65 SQATSARSVQVTQI 78 >gi|168699687|ref|ZP_02731964.1| probable flagellar hook-associated protein [Gemmata obscuriglobus UQM 2246] Length = 562 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M S+ IG +A ++ L + N++N T G+ + + + + + + Sbjct: 1 MTNSYAIGTSAIATAQKALDLIGQNVANATTPGYHRVDPQ----LVSRTTGPNVTGVDIG 56 Query: 61 SGKEYLSKEVGSFISTGT 78 S Y V + + TG Sbjct: 57 SVTRYSLPAVRTAVLTGN 74 >gi|74317654|ref|YP_315394.1| flagellar basal-body rod protein FlgC [Thiobacillus denitrificans ATCC 25259] gi|74057149|gb|AAZ97589.1| flagellar basal-body rod protein FlgC [Thiobacillus denitrificans ATCC 25259] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 16/31 (51%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G++ N N + EM MI ++ + S ++ Sbjct: 89 GYVTMPNVNVVEEMVNMISASRSYQSNVEMM 119 Score = 41.2 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTD--TVG----FRTIKVKFSEVVGAIKNDIDQKI 56 FN+ +A A QRL+TVA N++N D T ++ +V F+ + Sbjct: 5 NIFNVAGSAMNAQSQRLNTVASNLANADSATSANGQPYKAKQVVFAAAPVGDNGATGVNV 64 Query: 57 SFV 59 + V Sbjct: 65 AAV 67 >gi|296102910|ref|YP_003613056.1| flagellar basal body rod protein FlgC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057369|gb|ADF62107.1| flagellar basal body rod protein FlgC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D + G+++ N + + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAN------GYVKMPNVDVVGEMVNSMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.9 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A +RL+ A N++N G +R +V F K Sbjct: 4 LNIFDIAGSALTAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGAATGGVK 63 Query: 56 ISFVASGK 63 +S V + Sbjct: 64 VSDVVESQ 71 >gi|317052131|ref|YP_004113247.1| flagellar hook-associated protein FlgK [Desulfurispirillum indicum S5] gi|316947215|gb|ADU66691.1| flagellar hook-associated protein FlgK [Desulfurispirillum indicum S5] Length = 569 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 S N+GL+ LA + L TV N+SN +T GF +V Sbjct: 5 QSLNVGLSGVLASQSALMTVGHNLSNMNTEGFSRQRVV 42 Score = 39.6 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S N E+ M+ + F + + I ++ + + + Sbjct: 528 SGVNENEELTNMLKFQRSFEASSRFITTIDRLLDNIVNRMG 568 >gi|120613066|ref|YP_972744.1| flagellar hook-associated protein FlgK [Acidovorax citrulli AAC00-1] gi|120591530|gb|ABM34970.1| flagellar hook-associated protein FlgK [Acidovorax citrulli AAC00-1] Length = 642 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 + N+G A LA + L T N++N +T G+ + V G Sbjct: 1 MSLLNVGARALLANQVALQTTGHNIANVNTAGYSRQTLSLQTVQGQFTGG 50 >gi|123442786|ref|YP_001006763.1| flagellar basal body rod protein FlgC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161320|ref|YP_004297897.1| flagellar basal body rod protein FlgC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|2494525|sp|Q56894|FLGC_YEREN RecName: Full=Flagellar basal-body rod protein flgC gi|793899|emb|CAA88193.1| flgC [Yersinia enterocolitica] gi|122089747|emb|CAL12600.1| flagellar basal-body rod protein FlgC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325665550|gb|ADZ42194.1| flagellar basal body rod protein FlgC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860608|emb|CBX70905.1| flagellar basal-body rod protein flgC [Yersinia enterocolitica W22703] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + G VR P + + + +G++ Sbjct: 36 GPDGQPYRAKQVVFQVA-AQPGQETGGVRVAQIIDDPAPDRLVFQPGNPLADAKGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + EM I ++ + + +++ + ML+ + Sbjct: 95 NVDVTGEMVNTISASRSYQANVEVLNTTKSLMLKTLT 131 Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A NM+N G +R +V F + Q+ Sbjct: 4 LNIFDIAGSALSAQSQRLNVSASNMANADSVTGPDGQPYRAKQVVFQ-----VAAQPGQE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V + + G L Sbjct: 59 TGGVRVAQIIDDPAPDRLVFQPGNPL 84 >gi|193069522|ref|ZP_03050476.1| flagellar basal-body rod protein FlgC [Escherichia coli E110019] gi|192957270|gb|EDV87719.1| flagellar basal-body rod protein FlgC [Escherichia coli E110019] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ + S E + + +G+++ Sbjct: 36 GPDGQPYRAKQVVFQVN-AAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 95 NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 >gi|325921021|ref|ZP_08182903.1| flagellar basal-body rod protein FlgB [Xanthomonas gardneri ATCC 19865] gi|325548503|gb|EGD19475.1| flagellar basal-body rod protein FlgB [Xanthomonas gardneri ATCC 19865] Length = 182 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 16 EQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSF 73 EQR+ +A N+SN DT G++ + F + + + D + K Y G Sbjct: 69 EQRMKLIASNLSNVDTPGYKAKDMDFEAALKSAEGVRDGSLMQTTDAKHYEIGNSGGL 126 >gi|323341352|ref|ZP_08081596.1| hypothetical protein HMPREF0542_12027 [Lactobacillus ruminis ATCC 25644] gi|323091229|gb|EFZ33857.1| hypothetical protein HMPREF0542_12027 [Lactobacillus ruminis ATCC 25644] Length = 514 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 3/67 (4%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE---VVGAIKNDIDQKISFVAS 61 + A + L T A N++NT+T G+ +V + V A I ++ Sbjct: 8 LGTATSGITANQVALQTTAHNIANTNTDGYSRQRVHMTTKPPYVIAGTGTIGTGVNVTGV 67 Query: 62 GKEYLSK 68 + Sbjct: 68 ERVVDDF 74 Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 15/42 (35%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S N EM +I Q F + T ++ + + + Sbjct: 472 MSGVNINEEMSDVIKFQQGFQANTRVLSVIAEMLDTLVNKTG 513 >gi|1086559|gb|AAB68966.1| FlgC [Agrobacterium tumefaciens] gi|2459712|gb|AAB71788.1| FlgC [Agrobacterium tumefaciens] Length = 139 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 174 NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 + P P D + G ++ N N + EM M + +++ +I + Sbjct: 74 GDFVHEYDPGNPAADTN------GMVKMPNVNVVIEMADMREANRSYDANLQVIRQTRDL 127 Query: 234 MLEAIRNIAS 243 + I + + Sbjct: 128 VASTIDLLKA 137 >gi|89068701|ref|ZP_01156087.1| flagellar basal body rod protein [Oceanicola granulosus HTCC2516] gi|89045664|gb|EAR51726.1| flagellar basal body rod protein [Oceanicola granulosus HTCC2516] Length = 131 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK-FSEVVGAIKNDIDQKISFVA 60 F I L R V++N++N DT G+R V F +V +S A Sbjct: 9 FRIASQRMQWLGTRQQVVSENIANADTPGYRARDVSPFESMVTRSDAGSGPAVSNPA 65 >gi|15801191|ref|NP_287208.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7 EDL933] gi|15830706|ref|NP_309479.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7 str. Sakai] gi|16129037|ref|NP_415592.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|26247214|ref|NP_753254.1| flagellar basal body rod protein FlgC [Escherichia coli CFT073] gi|74311636|ref|YP_310055.1| flagellar basal body rod protein FlgC [Shigella sonnei Ss046] gi|82544460|ref|YP_408407.1| flagellar basal body rod protein FlgC [Shigella boydii Sb227] gi|89107920|ref|AP_001700.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. W3110] gi|91210226|ref|YP_540212.1| flagellar basal body rod protein FlgC [Escherichia coli UTI89] gi|110641250|ref|YP_668980.1| flagellar basal body rod protein FlgC [Escherichia coli 536] gi|117623260|ref|YP_852173.1| flagellar basal body rod protein FlgC [Escherichia coli APEC O1] gi|157158527|ref|YP_001462308.1| flagellar basal body rod protein FlgC [Escherichia coli E24377A] gi|157160601|ref|YP_001457919.1| flagellar basal body rod protein FlgC [Escherichia coli HS] gi|168747150|ref|ZP_02772172.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4113] gi|168758634|ref|ZP_02783641.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4401] gi|168764486|ref|ZP_02789493.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4501] gi|168767733|ref|ZP_02792740.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4486] gi|168773919|ref|ZP_02798926.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4196] gi|168783604|ref|ZP_02808611.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4076] gi|168790009|ref|ZP_02815016.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC869] gi|168802019|ref|ZP_02827026.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC508] gi|170020530|ref|YP_001725484.1| flagellar basal body rod protein FlgC [Escherichia coli ATCC 8739] gi|170080725|ref|YP_001730045.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|187733039|ref|YP_001880754.1| flagellar basal body rod protein FlgC [Shigella boydii CDC 3083-94] gi|188493209|ref|ZP_03000479.1| flagellar basal-body rod protein FlgC [Escherichia coli 53638] gi|191168455|ref|ZP_03030243.1| flagellar basal-body rod protein FlgC [Escherichia coli B7A] gi|191172415|ref|ZP_03033956.1| flagellar basal-body rod protein FlgC [Escherichia coli F11] gi|193064524|ref|ZP_03045604.1| flagellar basal-body rod protein FlgC [Escherichia coli E22] gi|194428485|ref|ZP_03061025.1| flagellar basal-body rod protein FlgC [Escherichia coli B171] gi|194437997|ref|ZP_03070090.1| flagellar basal-body rod protein FlgC [Escherichia coli 101-1] gi|195935464|ref|ZP_03080846.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7 str. EC4024] gi|208806183|ref|ZP_03248520.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4206] gi|208816163|ref|ZP_03257342.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4045] gi|208822529|ref|ZP_03262848.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4042] gi|209400948|ref|YP_002269920.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4115] gi|209918328|ref|YP_002292412.1| flagellar basal body rod protein FlgC [Escherichia coli SE11] gi|215486283|ref|YP_002328714.1| flagellar basal body rod protein FlgC [Escherichia coli O127:H6 str. E2348/69] gi|217328457|ref|ZP_03444539.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. TW14588] gi|218553653|ref|YP_002386566.1| flagellar basal body rod protein FlgC [Escherichia coli IAI1] gi|218557956|ref|YP_002390869.1| flagellar basal body rod protein FlgC [Escherichia coli S88] gi|218689027|ref|YP_002397239.1| flagellar basal body rod protein FlgC [Escherichia coli ED1a] gi|218694608|ref|YP_002402275.1| flagellar basal body rod protein FlgC [Escherichia coli 55989] gi|218700423|ref|YP_002408052.1| flagellar basal body rod protein FlgC [Escherichia coli IAI39] gi|218704482|ref|YP_002412001.1| flagellar basal body rod protein FlgC [Escherichia coli UMN026] gi|227886568|ref|ZP_04004373.1| flagellar basal body rod protein FlgC [Escherichia coli 83972] gi|237706940|ref|ZP_04537421.1| flagellar rod protein FlgC [Escherichia sp. 3_2_53FAA] gi|238900328|ref|YP_002926124.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli BW2952] gi|253773902|ref|YP_003036733.1| flagellar basal body rod protein FlgC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161180|ref|YP_003044288.1| flagellar basal body rod protein FlgC [Escherichia coli B str. REL606] gi|254792456|ref|YP_003077293.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7 str. TW14359] gi|256018669|ref|ZP_05432534.1| flagellar basal body rod protein FlgC [Shigella sp. D9] gi|256023228|ref|ZP_05437093.1| flagellar basal body rod protein FlgC [Escherichia sp. 4_1_40B] gi|260843314|ref|YP_003221092.1| flagellar component FlgC of cell-proximal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|260854557|ref|YP_003228448.1| flagellar component FlgC of cell-proximal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|260867437|ref|YP_003233839.1| flagellar component FlgC of cell-proximal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|261227021|ref|ZP_05941302.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK2000] gi|261256255|ref|ZP_05948788.1| flagellar component FlgC of cell-proximal portion of basal-body rod [Escherichia coli O157:H7 str. FRIK966] gi|291282094|ref|YP_003498912.1| Cell-proximal portion of basal-body rod [Escherichia coli O55:H7 str. CB9615] gi|293404358|ref|ZP_06648352.1| flgC [Escherichia coli FVEC1412] gi|293414369|ref|ZP_06657018.1| flagellar basal-body rod protein FlgC [Escherichia coli B185] gi|293433364|ref|ZP_06661792.1| flagellar basal-body rod protein FlgC [Escherichia coli B088] gi|298380138|ref|ZP_06989743.1| flagellar basal-body rod protein FlgC [Escherichia coli FVEC1302] gi|300816776|ref|ZP_07096996.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 107-1] gi|300821145|ref|ZP_07101294.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 119-7] gi|300899593|ref|ZP_07117832.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 198-1] gi|300902465|ref|ZP_07120447.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 84-1] gi|300918676|ref|ZP_07135257.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 115-1] gi|300922600|ref|ZP_07138700.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 182-1] gi|300928374|ref|ZP_07143908.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 187-1] gi|300938639|ref|ZP_07153368.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 21-1] gi|300950169|ref|ZP_07164114.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 116-1] gi|300954386|ref|ZP_07166840.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 175-1] gi|300974378|ref|ZP_07172590.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 45-1] gi|300982623|ref|ZP_07176207.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 200-1] gi|301023261|ref|ZP_07187058.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 69-1] gi|301029711|ref|ZP_07192765.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 196-1] gi|301051142|ref|ZP_07197972.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 185-1] gi|301304987|ref|ZP_07211089.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 124-1] gi|301328556|ref|ZP_07221617.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 78-1] gi|301644986|ref|ZP_07244952.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 146-1] gi|306814077|ref|ZP_07448250.1| flagellar basal body rod protein FlgC [Escherichia coli NC101] gi|307137709|ref|ZP_07497065.1| flagellar basal body rod protein FlgC [Escherichia coli H736] gi|309798068|ref|ZP_07692443.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 145-7] gi|312968852|ref|ZP_07783059.1| flagellar basal-body rod protein FlgC [Escherichia coli 2362-75] gi|312971211|ref|ZP_07785389.1| flagellar basal-body rod protein FlgC [Escherichia coli 1827-70] gi|331641618|ref|ZP_08342753.1| flagellar basal-body rod protein FlgC [Escherichia coli H736] gi|331646332|ref|ZP_08347435.1| flagellar basal-body rod protein FlgC [Escherichia coli M605] gi|331652127|ref|ZP_08353146.1| flagellar basal-body rod protein FlgC [Escherichia coli M718] gi|331657136|ref|ZP_08358098.1| flagellar basal-body rod protein FlgC [Escherichia coli TA206] gi|331662480|ref|ZP_08363403.1| flagellar basal-body rod protein FlgC [Escherichia coli TA143] gi|331667474|ref|ZP_08368338.1| flagellar basal-body rod protein FlgC [Escherichia coli TA271] gi|331672594|ref|ZP_08373383.1| flagellar basal-body rod protein FlgC [Escherichia coli TA280] gi|331676865|ref|ZP_08377561.1| flagellar basal-body rod protein FlgC [Escherichia coli H591] gi|331682576|ref|ZP_08383195.1| flagellar basal-body rod protein FlgC [Escherichia coli H299] gi|332279738|ref|ZP_08392151.1| flagellar rod protein FlgC [Shigella sp. D9] gi|78100011|sp|P0ABX4|FLGC_ECO57 RecName: Full=Flagellar basal-body rod protein flgC; AltName: Full=Putative proximal rod protein gi|78100012|sp|P0ABX3|FLGC_ECOL6 RecName: Full=Flagellar basal-body rod protein flgC; AltName: Full=Putative proximal rod protein gi|78100013|sp|P0ABX2|FLGC_ECOLI RecName: Full=Flagellar basal-body rod protein flgC; AltName: Full=Putative proximal rod protein gi|12514612|gb|AAG55820.1|AE005317_9 flagellar biosynthesis, cell-proximal portion of basal-body rod [Escherichia coli O157:H7 str. EDL933] gi|26107615|gb|AAN79814.1|AE016759_88 Flagellar basal-body rod protein flgC [Escherichia coli CFT073] gi|1787314|gb|AAC74158.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. MG1655] gi|4062651|dbj|BAA35882.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K12 substr. W3110] gi|13360916|dbj|BAB34875.1| flagellar rod protein FlgC [Escherichia coli O157:H7 str. Sakai] gi|73855113|gb|AAZ87820.1| flagellar protein for cell-proximal portion of basal-body rod [Shigella sonnei Ss046] gi|81245871|gb|ABB66579.1| cell-proximal portion of basal-body rod [Shigella boydii Sb227] gi|91071800|gb|ABE06681.1| flagellar biosynthesis, cell-proximal portion of basal-body rod [Escherichia coli UTI89] gi|110342842|gb|ABG69079.1| flagellar basal-body rod protein FlgC [Escherichia coli 536] gi|115512384|gb|ABJ00459.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli APEC O1] gi|157066281|gb|ABV05536.1| flagellar basal-body rod protein FlgC [Escherichia coli HS] gi|157080557|gb|ABV20265.1| flagellar basal-body rod protein FlgC [Escherichia coli E24377A] gi|169755458|gb|ACA78157.1| flagellar basal-body rod protein FlgC [Escherichia coli ATCC 8739] gi|169888560|gb|ACB02267.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli str. K-12 substr. DH10B] gi|187430031|gb|ACD09305.1| flagellar basal-body rod protein FlgC [Shigella boydii CDC 3083-94] gi|187770492|gb|EDU34336.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4196] gi|188017999|gb|EDU56121.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4113] gi|188488408|gb|EDU63511.1| flagellar basal-body rod protein FlgC [Escherichia coli 53638] gi|188999102|gb|EDU68088.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4076] gi|189354569|gb|EDU72988.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4401] gi|189363308|gb|EDU81727.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4486] gi|189365512|gb|EDU83928.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4501] gi|189370511|gb|EDU88927.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC869] gi|189375937|gb|EDU94353.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC508] gi|190901474|gb|EDV61235.1| flagellar basal-body rod protein FlgC [Escherichia coli B7A] gi|190907299|gb|EDV66897.1| flagellar basal-body rod protein FlgC [Escherichia coli F11] gi|192927776|gb|EDV82390.1| flagellar basal-body rod protein FlgC [Escherichia coli E22] gi|194413537|gb|EDX29819.1| flagellar basal-body rod protein FlgC [Escherichia coli B171] gi|194422933|gb|EDX38927.1| flagellar basal-body rod protein FlgC [Escherichia coli 101-1] gi|208725984|gb|EDZ75585.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4206] gi|208732811|gb|EDZ81499.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4045] gi|208738014|gb|EDZ85697.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4042] gi|209162348|gb|ACI39781.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC4115] gi|209773398|gb|ACI85011.1| flagellar rod protein FlgC [Escherichia coli] gi|209773400|gb|ACI85012.1| flagellar rod protein FlgC [Escherichia coli] gi|209773402|gb|ACI85013.1| flagellar rod protein FlgC [Escherichia coli] gi|209773404|gb|ACI85014.1| flagellar rod protein FlgC [Escherichia coli] gi|209773406|gb|ACI85015.1| flagellar rod protein FlgC [Escherichia coli] gi|209911587|dbj|BAG76661.1| flagellar basal-body rod protein FlgC [Escherichia coli SE11] gi|215264355|emb|CAS08712.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O127:H6 str. E2348/69] gi|217318884|gb|EEC27310.1| flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. TW14588] gi|218351340|emb|CAU97046.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli 55989] gi|218360421|emb|CAQ97973.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli IAI1] gi|218364725|emb|CAR02415.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli S88] gi|218370409|emb|CAR18216.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli IAI39] gi|218426591|emb|CAR07419.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli ED1a] gi|218431579|emb|CAR12458.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli UMN026] gi|222032827|emb|CAP75566.1| flagellar basal-body rod protein flgC [Escherichia coli LF82] gi|226898150|gb|EEH84409.1| flagellar rod protein FlgC [Escherichia sp. 3_2_53FAA] gi|227836772|gb|EEJ47238.1| flagellar basal body rod protein FlgC [Escherichia coli 83972] gi|238861102|gb|ACR63100.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli BW2952] gi|242376878|emb|CAQ31595.1| flagellar basal-body rod protein FlgC, subunit of Flagellar Motor Complex and Flagellum [Escherichia coli BL21(DE3)] gi|253324946|gb|ACT29548.1| flagellar basal-body rod protein FlgC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973081|gb|ACT38752.1| flagellar basal-body rod protein C [Escherichia coli B str. REL606] gi|253977295|gb|ACT42965.1| flagellar basal-body rod protein C [Escherichia coli BL21(DE3)] gi|254591856|gb|ACT71217.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli O157:H7 str. TW14359] gi|257753206|dbj|BAI24708.1| flagellar component FlgC of cell-proximal portion of basal-body rod [Escherichia coli O26:H11 str. 11368] gi|257758461|dbj|BAI29958.1| flagellar component FlgC of cell-proximal portion of basal-body rod [Escherichia coli O103:H2 str. 12009] gi|257763793|dbj|BAI35288.1| flagellar component FlgC of cell-proximal portion of basal-body rod [Escherichia coli O111:H- str. 11128] gi|260449786|gb|ACX40208.1| flagellar basal-body rod protein FlgC [Escherichia coli DH1] gi|281178183|dbj|BAI54513.1| flagellar basal-body rod protein FlgC [Escherichia coli SE15] gi|284920897|emb|CBG33960.1| flagellar basal-body rod protein FlgC [Escherichia coli 042] gi|290761967|gb|ADD55928.1| Cell-proximal portion of basal-body rod [Escherichia coli O55:H7 str. CB9615] gi|291324183|gb|EFE63605.1| flagellar basal-body rod protein FlgC [Escherichia coli B088] gi|291428944|gb|EFF01969.1| flgC [Escherichia coli FVEC1412] gi|291434427|gb|EFF07400.1| flagellar basal-body rod protein FlgC [Escherichia coli B185] gi|294493232|gb|ADE91988.1| flagellar basal-body rod protein FlgC [Escherichia coli IHE3034] gi|298279836|gb|EFI21344.1| flagellar basal-body rod protein FlgC [Escherichia coli FVEC1302] gi|299877399|gb|EFI85610.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 196-1] gi|300297163|gb|EFJ53548.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 185-1] gi|300307088|gb|EFJ61608.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 200-1] gi|300318622|gb|EFJ68406.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 175-1] gi|300356864|gb|EFJ72734.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 198-1] gi|300397106|gb|EFJ80644.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 69-1] gi|300405497|gb|EFJ89035.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 84-1] gi|300410621|gb|EFJ94159.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 45-1] gi|300414170|gb|EFJ97480.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 115-1] gi|300421077|gb|EFK04388.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 182-1] gi|300450516|gb|EFK14136.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 116-1] gi|300456424|gb|EFK19917.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 21-1] gi|300463632|gb|EFK27125.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 187-1] gi|300526444|gb|EFK47513.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 119-7] gi|300530550|gb|EFK51612.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 107-1] gi|300839705|gb|EFK67465.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 124-1] gi|300844948|gb|EFK72708.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 78-1] gi|301076715|gb|EFK91521.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 146-1] gi|305852714|gb|EFM53162.1| flagellar basal body rod protein FlgC [Escherichia coli NC101] gi|307553076|gb|ADN45851.1| flagellar basal-body rod protein FlgC [Escherichia coli ABU 83972] gi|307627456|gb|ADN71760.1| flagellar basal body rod protein FlgC [Escherichia coli UM146] gi|308118351|gb|EFO55613.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 145-7] gi|309701346|emb|CBJ00647.1| flagellar basal-body rod protein FlgC [Escherichia coli ETEC H10407] gi|310336413|gb|EFQ01599.1| flagellar basal-body rod protein FlgC [Escherichia coli 1827-70] gi|312286254|gb|EFR14167.1| flagellar basal-body rod protein FlgC [Escherichia coli 2362-75] gi|312945636|gb|ADR26463.1| flagellar basal body rod protein FlgC [Escherichia coli O83:H1 str. NRG 857C] gi|315135706|dbj|BAJ42865.1| cell-proximal portion of basal-body rod [Escherichia coli DH1] gi|315253875|gb|EFU33843.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 85-1] gi|315287371|gb|EFU46782.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 110-3] gi|315291068|gb|EFU50431.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 153-1] gi|315296705|gb|EFU56000.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 16-3] gi|315618244|gb|EFU98834.1| flagellar basal-body rod protein FlgC [Escherichia coli 3431] gi|320179226|gb|EFW54184.1| Flagellar basal-body rod protein FlgC [Shigella boydii ATCC 9905] gi|320186979|gb|EFW61692.1| Flagellar basal-body rod protein FlgC [Shigella flexneri CDC 796-83] gi|320189757|gb|EFW64413.1| Flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. EC1212] gi|320196444|gb|EFW71067.1| Flagellar basal-body rod protein FlgC [Escherichia coli WV_060327] gi|320637525|gb|EFX07325.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7 str. G5101] gi|320643086|gb|EFX12287.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H- str. 493-89] gi|320648544|gb|EFX17199.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H- str. H 2687] gi|320653858|gb|EFX21932.1| flagellar basal body rod protein FlgC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659338|gb|EFX26907.1| flagellar basal body rod protein FlgC [Escherichia coli O55:H7 str. USDA 5905] gi|320664473|gb|EFX31624.1| flagellar basal body rod protein FlgC [Escherichia coli O157:H7 str. LSU-61] gi|323156881|gb|EFZ43015.1| flagellar basal-body rod protein FlgC [Escherichia coli EPECa14] gi|323163756|gb|EFZ49575.1| flagellar basal-body rod protein FlgC [Escherichia coli E128010] gi|323174797|gb|EFZ60412.1| flagellar basal-body rod protein FlgC [Escherichia coli LT-68] gi|323175695|gb|EFZ61289.1| flagellar basal-body rod protein FlgC [Escherichia coli 1180] gi|323185803|gb|EFZ71164.1| flagellar basal-body rod protein FlgC [Escherichia coli 1357] gi|323190586|gb|EFZ75858.1| flagellar basal-body rod protein FlgC [Escherichia coli RN587/1] gi|323937814|gb|EGB34078.1| flagellar basal-body rod protein FlgC [Escherichia coli E1520] gi|323942543|gb|EGB38710.1| flagellar basal-body rod protein FlgC [Escherichia coli E482] gi|323947624|gb|EGB43628.1| flagellar basal-body rod protein FlgC [Escherichia coli H120] gi|323953240|gb|EGB49106.1| flagellar basal-body rod protein FlgC [Escherichia coli H252] gi|323957898|gb|EGB53610.1| flagellar basal-body rod protein FlgC [Escherichia coli H263] gi|323962673|gb|EGB58251.1| flagellar basal-body rod protein FlgC [Escherichia coli H489] gi|323967015|gb|EGB62441.1| flagellar basal-body rod protein FlgC [Escherichia coli M863] gi|323973337|gb|EGB68526.1| flagellar basal-body rod protein FlgC [Escherichia coli TA007] gi|323976553|gb|EGB71641.1| flagellar basal-body rod protein FlgC [Escherichia coli TW10509] gi|324007914|gb|EGB77133.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 57-2] gi|324013348|gb|EGB82567.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 60-1] gi|324017422|gb|EGB86641.1| flagellar basal-body rod protein FlgC [Escherichia coli MS 117-3] gi|324117355|gb|EGC11262.1| flagellar basal-body rod protein FlgC [Escherichia coli E1167] gi|326339296|gb|EGD63110.1| Flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. 1125] gi|326344743|gb|EGD68491.1| Flagellar basal-body rod protein FlgC [Escherichia coli O157:H7 str. 1044] gi|327253473|gb|EGE65111.1| flagellar basal-body rod protein FlgC [Escherichia coli STEC_7v] gi|330910888|gb|EGH39398.1| flagellar basal-body rod protein FlgC [Escherichia coli AA86] gi|331038416|gb|EGI10636.1| flagellar basal-body rod protein FlgC [Escherichia coli H736] gi|331045084|gb|EGI17211.1| flagellar basal-body rod protein FlgC [Escherichia coli M605] gi|331050405|gb|EGI22463.1| flagellar basal-body rod protein FlgC [Escherichia coli M718] gi|331055384|gb|EGI27393.1| flagellar basal-body rod protein FlgC [Escherichia coli TA206] gi|331060902|gb|EGI32866.1| flagellar basal-body rod protein FlgC [Escherichia coli TA143] gi|331065059|gb|EGI36954.1| flagellar basal-body rod protein FlgC [Escherichia coli TA271] gi|331070237|gb|EGI41603.1| flagellar basal-body rod protein FlgC [Escherichia coli TA280] gi|331075554|gb|EGI46852.1| flagellar basal-body rod protein FlgC [Escherichia coli H591] gi|331080207|gb|EGI51386.1| flagellar basal-body rod protein FlgC [Escherichia coli H299] gi|332094031|gb|EGI99083.1| flagellar basal-body rod protein FlgC [Shigella boydii 3594-74] gi|332102090|gb|EGJ05436.1| flagellar rod protein FlgC [Shigella sp. D9] gi|332342620|gb|AEE55954.1| flagellar basal-body rod protein FlgC [Escherichia coli UMNK88] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ + S E + + +G+++ Sbjct: 36 GPDGQPYRAKQVVFQVN-AAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 95 NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.6 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F+I +A A QRL+ A N++N G +R +V F Sbjct: 4 LNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQ 50 >gi|319403959|emb|CBI77547.1| Flagellar basal-body rod protein flgC [Bartonella rochalimae ATCC BAA-1498] Length = 138 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKNDIDQKISF 58 I A RL +A+N++N ++ G ++ V F + + ++ Sbjct: 10 QIATTGLSAQSTRLRVIAENLANANSTGKSPGARPYQRKTVSFEATLNPYLDAQGVHVTR 69 Query: 59 VASGK 63 +++ K Sbjct: 70 ISTDK 74 Score = 42.0 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N NS+ EM M + + + +I + + + I Sbjct: 92 GYVKYPNVNSIIEMADMREANRSYEANLQVIRQARDLISQTI 133 >gi|218133658|ref|ZP_03462462.1| hypothetical protein BACPEC_01527 [Bacteroides pectinophilus ATCC 43243] gi|217991033|gb|EEC57039.1| hypothetical protein BACPEC_01527 [Bacteroides pectinophilus ATCC 43243] Length = 149 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 15/28 (53%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV 32 FNI + A R +++N++N +T Sbjct: 7 FNIASSGMTAQRLRTDVISENIANVNTT 34 Score = 43.1 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 203 NANSMYEMGQMIHLTQKFNSITTL 226 N N + EM +I T+ + + T Sbjct: 109 NVNVVQEMTDLIDATRSYEANVTA 132 >gi|126463750|ref|YP_001044864.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides ATCC 17029] gi|332559806|ref|ZP_08414128.1| flagellar basal body rod protein FlgC2 [Rhodobacter sphaeroides WS8N] gi|126105414|gb|ABN78092.1| protein of unknown function DUF1078 domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332277518|gb|EGJ22833.1| flagellar basal body rod protein FlgC2 [Rhodobacter sphaeroides WS8N] Length = 126 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 S + + + RL V++N++N DT G+ V F E Sbjct: 5 LQSLGLSASGMRSQALRLRHVSENIANADTPGYHRKTVSFQE 46 Score = 39.3 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 17/42 (40%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+ + SN + + E+ + + + + D+ + + Sbjct: 80 GYYDGSNVDLVVEVADAREAQRSYEANLRMFDQARQMTQSLL 121 >gi|238788313|ref|ZP_04632107.1| Flagellar basal-body rod protein flgC [Yersinia frederiksenii ATCC 33641] gi|238723559|gb|EEQ15205.1| Flagellar basal-body rod protein flgC [Yersinia frederiksenii ATCC 33641] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + G VR P + + + +G++ Sbjct: 36 GPDGQPYRAKQVVFQVA-AQPGQETGGVRVAQVVDDPAPDRLVFQPGNPLADAKGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + EM I ++ + + +++ + ML+ + Sbjct: 95 NVDVTGEMVNTISASRSYQANVEVLNTTKSLMLKTLT 131 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QR++ A NM+N G +R +V F + Q+ Sbjct: 4 LNIFDIAGSALSAQSQRMNVSASNMANADSVTGPDGQPYRAKQVVFQ-----VAAQPGQE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V + + G L Sbjct: 59 TGGVRVAQVVDDPAPDRLVFQPGNPL 84 >gi|320015457|gb|ADV99028.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 554 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKIS 57 M S N ++ A + LSTV++N++N G+ F++ G I + I ++ Sbjct: 1 MSNSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGVT 60 Query: 58 FVASGKEYLSK 68 +EY + Sbjct: 61 VTGVNREYNAF 71 >gi|319650643|ref|ZP_08004783.1| flagellar hook-associated protein K [Bacillus sp. 2_A_57_CT2] gi|317397824|gb|EFV78522.1| flagellar hook-associated protein K [Bacillus sp. 2_A_57_CT2] Length = 518 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 7/78 (8%) Query: 2 QTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 S +GL + L T N+SN +T G+ ++ FS+ +++ Sbjct: 1 MRSTFMGLETARRGMFTQQSALYTTGHNISNANTPGYTRQRINFSQTEPYPGAGLNRPQI 60 Query: 58 FVASGKEYLSKEVGSFIS 75 G E GS Sbjct: 61 PGQMGTGV---EAGSVQR 75 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 S + EM MI +N+ I ++ + + I + Sbjct: 474 SAVSLDEEMTNMIKFQHAYNASARNITVVDEMLDKIINGMG 514 >gi|258511108|ref|YP_003184542.1| flagellar basal-body rod protein FlgB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477834|gb|ACV58153.1| flagellar basal-body rod protein FlgB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK 55 A A R + A+N++N +T G++ V F ++ + Sbjct: 10 ALDASTLRQAVYANNIANAETPGYKRQDVAFETLLQNALSGQASG 54 >gi|319406974|emb|CBI80611.1| Flagellar basal-body rod protein flgC [Bartonella sp. 1-1C] Length = 138 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKNDIDQKISF 58 I A RL +A+N++N ++ G ++ V F + + ++ Sbjct: 10 QIATTGLSAQSTRLRVIAENLANANSTGKSPGARPYQRKTVSFEATLNPYIDAQGVHVTR 69 Query: 59 VASGK 63 +++ K Sbjct: 70 ISTDK 74 Score = 42.0 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N NS+ EM M + + + +I + + + I Sbjct: 92 GYVKYPNVNSIIEMADMREANRSYEANLQVIRQARDLISQTI 133 >gi|146281768|ref|YP_001171921.1| flagellar basal body rod protein FlgB [Pseudomonas stutzeri A1501] gi|145569973|gb|ABP79079.1| flagellar basal-body rod protein FlgB [Pseudomonas stutzeri A1501] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + F V+ Sbjct: 1 MSISFDKALGIHEKALGFRSQRAEVLANNIANADTPNYKARDLDFGSVLAEQSAQGQGGF 60 Query: 57 SFVASGKEYLSKE 69 + + +++ E Sbjct: 61 AATRTSDRHIAAE 73 >gi|307310148|ref|ZP_07589798.1| flagellar basal-body rod protein FlgC [Escherichia coli W] gi|306909866|gb|EFN40360.1| flagellar basal-body rod protein FlgC [Escherichia coli W] gi|315060352|gb|ADT74679.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli W] gi|320200970|gb|EFW75554.1| Flagellar basal-body rod protein FlgC [Escherichia coli EC4100B] gi|323379087|gb|ADX51355.1| flagellar basal-body rod protein FlgC [Escherichia coli KO11] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + + + G V+ + S + E + + +G+++ Sbjct: 36 GPDGQPYRAKQVVFQVN-AAPGAATGGVKVADVIESQSPDKLVYEPGNPLADAKGYVKMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + + EM + ++ + + +++ + ML+ + Sbjct: 95 NVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.9 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F+I +A A QRL+ A N++N G +R +V F Sbjct: 4 LNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQ 50 >gi|77464908|ref|YP_354412.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides 2.4.1] gi|221640829|ref|YP_002527091.1| flagellar basal body rod protein FlgC [Rhodobacter sphaeroides KD131] gi|77389326|gb|ABA80511.1| putative flagellar basal-body rod protein FlgC [Rhodobacter sphaeroides 2.4.1] gi|221161610|gb|ACM02590.1| flagellar basal-body rod protein FlgC [Rhodobacter sphaeroides KD131] Length = 128 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE 43 S + + + RL V++N++N DT G+ V F E Sbjct: 7 LQSLGLSASGMRSQALRLRHVSENIANADTPGYHRKTVSFQE 48 Score = 40.4 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 17/42 (40%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+ + SN + + E+ + + + + D+ + + Sbjct: 82 GYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQMTQSLL 123 >gi|192360466|ref|YP_001982403.1| flagellar basal-body rod protein FlgB [Cellvibrio japonicus Ueda107] gi|190686631|gb|ACE84309.1| flagellar basal-body rod protein FlgB [Cellvibrio japonicus Ueda107] Length = 133 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Query: 1 MQTSFNIGL----AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI 48 M SF+ L +A +R S +A+N++N DT ++ V F + +G Sbjct: 1 MSISFDKALGIHESALKFRSERASVLANNLANIDTPNYKARDVDFKQALGQQ 52 >gi|154686035|ref|YP_001421196.1| flagellar basal body rod protein FlgC [Bacillus amyloliquefaciens FZB42] gi|154351886|gb|ABS73965.1| FlgC [Bacillus amyloliquefaciens FZB42] Length = 150 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM ++ T+ + + T ++ ++ +L+A+ Sbjct: 105 GYVQKPNVDPLKEMVDLVSSTRSYEANVTALNASKGMLLKAL 146 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 17/89 (19%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKV-------KFSEVV 45 S NI +A A R+ V+ N++N DT G +R V FS ++ Sbjct: 5 QSLNISGSALTAQRVRMDVVSSNLANMDTTRAKQVNGEWVPYRRKLVSLQSGGESFSSLL 64 Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + N + V + + Sbjct: 65 HSKMNGTGSAGNGVKVSGVTEDPSAFNLV 93 >gi|170024641|ref|YP_001721146.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis YPIII] gi|169751175|gb|ACA68693.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis YPIII] Length = 554 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKIS 57 M S N ++ A + LSTV++N++N G+ F++ G I + I ++ Sbjct: 1 MSNSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGVT 60 Query: 58 FVASGKEYLSK 68 +EY + Sbjct: 61 VTGVNREYNAF 71 >gi|22126384|ref|NP_669807.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM 10] gi|45441403|ref|NP_992942.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Microtus str. 91001] gi|51596017|ref|YP_070208.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 32953] gi|108807179|ref|YP_651095.1| flagellar hook-associated protein FlgK [Yersinia pestis Antiqua] gi|108812477|ref|YP_648244.1| flagellar hook-associated protein FlgK [Yersinia pestis Nepal516] gi|145598604|ref|YP_001162680.1| flagellar hook-associated protein FlgK [Yersinia pestis Pestoides F] gi|149366245|ref|ZP_01888280.1| flagellar hook-associated protein 1 [Yersinia pestis CA88-4125] gi|153948415|ref|YP_001401283.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 31758] gi|162421752|ref|YP_001606478.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola] gi|165925892|ref|ZP_02221724.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. F1991016] gi|165938764|ref|ZP_02227319.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. IP275] gi|166010871|ref|ZP_02231769.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. E1979001] gi|166210949|ref|ZP_02236984.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. B42003004] gi|167401050|ref|ZP_02306553.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420208|ref|ZP_02311961.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425863|ref|ZP_02317616.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467496|ref|ZP_02332200.1| flagellar hook-associated protein FlgK [Yersinia pestis FV-1] gi|186895120|ref|YP_001872232.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis PB1/+] gi|218928928|ref|YP_002346803.1| flagellar hook-associated protein FlgK [Yersinia pestis CO92] gi|229896251|ref|ZP_04511421.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides A] gi|229897188|ref|ZP_04512344.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897915|ref|ZP_04513066.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Orientalis str. India 195] gi|229902854|ref|ZP_04517971.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516] gi|270486639|ref|ZP_06203713.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27] gi|294504024|ref|YP_003568086.1| flagellar hook-associated protein [Yersinia pestis Z176003] gi|21959370|gb|AAM86058.1|AE013853_6 flagellar biosynthesis protein, hook-filament junction protein 1 [Yersinia pestis KIM 10] gi|45436263|gb|AAS61819.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Microtus str. 91001] gi|51589299|emb|CAH20920.1| flagellar hook-associated protein 1 [Yersinia pseudotuberculosis IP 32953] gi|108776125|gb|ABG18644.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516] gi|108779092|gb|ABG13150.1| flagellar hook-associated protein 1 [Yersinia pestis Antiqua] gi|115347539|emb|CAL20448.1| flagellar hook-associated protein 1 [Yersinia pestis CO92] gi|145210300|gb|ABP39707.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides F] gi|149292658|gb|EDM42732.1| flagellar hook-associated protein 1 [Yersinia pestis CA88-4125] gi|152959910|gb|ABS47371.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 31758] gi|162354567|gb|ABX88515.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola] gi|165913378|gb|EDR32000.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. IP275] gi|165922096|gb|EDR39273.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. F1991016] gi|165990215|gb|EDR42516.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. E1979001] gi|166208129|gb|EDR52609.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. B42003004] gi|166961903|gb|EDR57924.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049439|gb|EDR60847.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055262|gb|EDR65059.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186698146|gb|ACC88775.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis PB1/+] gi|229680301|gb|EEO76400.1| flagellar hook-associated protein 1 [Yersinia pestis Nepal516] gi|229688956|gb|EEO81021.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Orientalis str. India 195] gi|229693525|gb|EEO83574.1| flagellar hook-associated protein 1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701174|gb|EEO89203.1| flagellar hook-associated protein 1 [Yersinia pestis Pestoides A] gi|262361790|gb|ACY58511.1| flagellar hook-associated protein [Yersinia pestis D106004] gi|262366074|gb|ACY62631.1| flagellar hook-associated protein [Yersinia pestis D182038] gi|270335143|gb|EFA45920.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27] gi|294354483|gb|ADE64824.1| flagellar hook-associated protein [Yersinia pestis Z176003] Length = 554 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKIS 57 M S N ++ A + LSTV++N++N G+ F++ G I + I ++ Sbjct: 1 MSNSLMNTAMSGLNAAQYALSTVSNNITNFQVAGYNRQNTVFAQNGGTITSAGFIGNGVT 60 Query: 58 FVASGKEYLSK 68 +EY + Sbjct: 61 VTGVNREYNAF 71 >gi|330826761|ref|YP_004390064.1| flagellar hook-associated protein FlgK [Alicycliphilus denitrificans K601] gi|329312133|gb|AEB86548.1| flagellar hook-associated protein FlgK [Alicycliphilus denitrificans K601] Length = 660 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 + N+G A LA + L T N++N T G+ V V G Sbjct: 1 MSLLNVGARALLANQVALQTTGHNIANVSTAGYSRQSVAMQTVQGQFTGS 50 Score = 36.9 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 26/141 (18%) Query: 128 SVPIQI----------PQKDEIFNVGE-------KGEISQKGKVIATMGLYSVDM-SQGF 169 PIQI PQ + VG G G A M L V M + Sbjct: 519 GQPIQIDGWSITLQGTPQDGDTVTVGNALDPQYGDGYTRNAGNASALMRLRDVKMFDEST 578 Query: 170 VRRENSGISPNIPPTPLEDLSGVTV---KRGFLEDS-----NANSMYEMGQMIHLTQKFN 221 + +G+ + + LE S N E ++I Q + Sbjct: 579 LSDGYAGLMAQVGTRTQSAQYAAKLSDSIASNLEASRTAVSGVNLDEEAARLIQYQQAYQ 638 Query: 222 SITTLIDENEKSMLEAIRNIA 242 + ++ + I+++ Sbjct: 639 ASAKMLQIAQNIFDNLIQSMG 659 >gi|313610105|gb|EFR85430.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL F2-208] Length = 133 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 L+ V++N++N +T F+ + F E +G+ Q + G Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESLGSSLRASGQN----------SIESAG 61 Query: 72 SFISTG 77 + T Sbjct: 62 NLTKTN 67 >gi|319764545|ref|YP_004128482.1| flagellar hook-associated protein flgk [Alicycliphilus denitrificans BC] gi|317119106|gb|ADV01595.1| flagellar hook-associated protein FlgK [Alicycliphilus denitrificans BC] Length = 660 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 + N+G A LA + L T N++N T G+ V V G Sbjct: 1 MSLLNVGARALLANQVALQTTGHNIANVSTAGYSRQSVAMQTVQGQFTGS 50 Score = 36.9 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 26/141 (18%) Query: 128 SVPIQI----------PQKDEIFNVGE-------KGEISQKGKVIATMGLYSVDM-SQGF 169 PIQI PQ + VG G G A M L V M + Sbjct: 519 GQPIQIDGWSITLQGTPQDGDTVTVGNALDPQYGDGYTRNAGNASALMRLRDVKMFDEST 578 Query: 170 VRRENSGISPNIPPTPLEDLSGVTV---KRGFLEDS-----NANSMYEMGQMIHLTQKFN 221 + +G+ + + LE S N E ++I Q + Sbjct: 579 LSDGYAGLMAQVGTRTQSAQYAAKLSDSIASNLEASRTAVSGVNLDEEAARLIQYQQAYQ 638 Query: 222 SITTLIDENEKSMLEAIRNIA 242 + ++ + I+++ Sbjct: 639 ASAKMLQIAQNIFDNLIQSMG 659 >gi|119947171|ref|YP_944851.1| flagellar hook-associated protein FlgK [Psychromonas ingrahamii 37] gi|119865775|gb|ABM05252.1| flagellar hook-associated protein FlgK [Psychromonas ingrahamii 37] Length = 454 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +NI L+ A L+ A N++N +T G + S + ND+ + + Sbjct: 1 MSIYNIALSGVSANRTALNITAQNIANANTAGHSRQQAVQSSI--TRSNDVGAGVEVSSI 58 Query: 62 GKEYLSKEVGSFISTGTEL 80 + + S+ TEL Sbjct: 59 RRMADQFIISQLRSSNTEL 77 >gi|253990129|ref|YP_003041485.1| flagellar basal body rod protein FlgC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639034|emb|CAR67648.1| flagellar basal-body rod protein flgc (putative proximal rod protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781579|emb|CAQ84742.1| flagellar basal-body rod protein flgc (putative proximal rod protein) [Photorhabdus asymbiotica] Length = 134 Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 21/43 (48%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 G++ N + + EM I ++ + + +++ + ML+ + Sbjct: 89 GYVRMPNVDVVGEMINTISASRSYQANVEVLNTTKSLMLKTLT 131 Score = 38.5 bits (89), Expect = 0.82, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I +A A QRL+ A NM+N D+V +R +V F A + ++S Sbjct: 7 FDIAGSALSAQSQRLNVSASNMANADSVAGPDGQPYRAKQVVFRVAAPAGQETGGVRVSE 66 Query: 59 V 59 + Sbjct: 67 I 67 >gi|317182784|dbj|BAJ60568.1| flagellar basal body rod protein FlgC [Helicobacter pylori F57] Length = 161 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|308050366|ref|YP_003913932.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM 9799] gi|307632556|gb|ADN76858.1| flagellar hook-associated protein FlgK [Ferrimonas balearica DSM 9799] Length = 636 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 M +I + LA ++++ ++N++N T G+ + Sbjct: 1 MADLMSIARSGVLAAQKQMGVTSNNIANVGTEGYNRQVAE 40 >gi|218549198|ref|YP_002382989.1| flagellar basal body rod protein FlgC [Escherichia fergusonii ATCC 35469] gi|218356739|emb|CAQ89367.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia fergusonii ATCC 35469] gi|324113869|gb|EGC07843.1| flagellar basal-body rod protein FlgC [Escherichia fergusonii B253] gi|325497618|gb|EGC95477.1| flagellar basal body rod protein FlgC [Escherichia fergusonii ECD227] Length = 134 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D + G+++ N + + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAN------GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A N++N G +R V F + N Sbjct: 4 LNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKHVVFQ-----VDNAPGAA 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V S+ + G L Sbjct: 59 TGGVKVAGVVESQAPDKLVYEPGNPL 84 >gi|218133657|ref|ZP_03462461.1| hypothetical protein BACPEC_01526 [Bacteroides pectinophilus ATCC 43243] gi|217991032|gb|EEC57038.1| hypothetical protein BACPEC_01526 [Bacteroides pectinophilus ATCC 43243] Length = 131 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE 69 R + +N++N DT G++ V F + + + + S + ++ + Sbjct: 23 RNEVLTNNIANVDTPGYKRKDVSFEKYLNSALEAPENPYSTLNQRVKHADLD 74 >gi|168698713|ref|ZP_02730990.1| flagellar basal-body rod protein FlgB [Gemmata obscuriglobus UQM 2246] Length = 116 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIKNDIDQKISFVASGKEYLSKEV 70 A R +A N++N +T G++ ++V F ++ A+ + K + Sbjct: 15 LDASGLRHRVIAQNVANVNTPGYKRLEVAFEADLAKALASPTGGTPV-----KPRVVTGD 69 Query: 71 GSFISTGTELDF 82 G G +D Sbjct: 70 GPERVDGNNVDI 81 >gi|28869138|ref|NP_791757.1| flagellar basal-body rod protein FlgC [Pseudomonas syringae pv. tomato str. DC3000] gi|66046709|ref|YP_236550.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. syringae B728a] gi|71737330|ref|YP_275565.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. phaseolicola 1448A] gi|213967584|ref|ZP_03395732.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. tomato T1] gi|237799204|ref|ZP_04587665.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806223|ref|ZP_04592927.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. oryzae str. 1_6] gi|257484951|ref|ZP_05638992.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627761|ref|ZP_06460715.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651649|ref|ZP_06482992.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. aesculi str. 2250] gi|298487859|ref|ZP_07005899.1| Flagellar basal-body rod protein flgC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385711|ref|ZP_07234129.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. tomato Max13] gi|302060077|ref|ZP_07251618.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. tomato K40] gi|302134836|ref|ZP_07260826.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302185585|ref|ZP_07262258.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. syringae 642] gi|28852378|gb|AAO55452.1| flagellar basal-body rod protein FlgC [Pseudomonas syringae pv. tomato str. DC3000] gi|63257416|gb|AAY38512.1| Flagellar basal-body rod protein FlgC [Pseudomonas syringae pv. syringae B728a] gi|71557883|gb|AAZ37094.1| flagellar basal-body rod protein FlgC [Pseudomonas syringae pv. phaseolicola 1448A] gi|213927885|gb|EEB61432.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. tomato T1] gi|298157584|gb|EFH98664.1| Flagellar basal-body rod protein flgC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325091|gb|EFW81160.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. glycinea str. B076] gi|320329350|gb|EFW85343.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. glycinea str. race 4] gi|330866420|gb|EGH01129.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875981|gb|EGH10130.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330880520|gb|EGH14669.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. glycinea str. race 4] gi|330889087|gb|EGH21748.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. mori str. 301020] gi|330899399|gb|EGH30818.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943205|gb|EGH45612.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. pisi str. 1704B] gi|330953719|gb|EGH53979.1| flagellar basal body rod protein FlgC [Pseudomonas syringae Cit 7] gi|330961194|gb|EGH61454.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. maculicola str. ES4326] gi|330967088|gb|EGH67348.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. actinidiae str. M302091] gi|330972411|gb|EGH72477.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975974|gb|EGH76040.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330986466|gb|EGH84569.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011040|gb|EGH91096.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331017028|gb|EGH97084.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331022059|gb|EGI02116.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027336|gb|EGI07391.1| flagellar basal body rod protein FlgC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 146 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 18/37 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N N + EM MI ++ F + +++ + M + + Sbjct: 107 NVNVVEEMADMISASRSFQTNAEIMNTAKSMMQKVLT 143 Score = 42.3 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQ 54 FNI +A A RL+T A N++N +TV +R F+ V+ ++ Sbjct: 5 NVFNIAGSAMSAQTTRLNTTASNIANAETVSSSMDQTYRARHPVFATVMQGQQSTGGS 62 >gi|113969612|ref|YP_733405.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-4] gi|113884296|gb|ABI38348.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-4] Length = 641 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L ++N++N +T G+ + + + N ++V+ K Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQTTLDSQRLGNSFYGTGTYVSDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RIYND 70 >gi|114046844|ref|YP_737394.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-7] gi|113888286|gb|ABI42337.1| flagellar hook-associated protein FlgK [Shewanella sp. MR-7] Length = 641 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI LA + +L ++N++N +T G+ + + + N ++V+ K Sbjct: 6 LNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQTTLDSQRLGNSFYGTGTYVSDVK 65 Query: 64 EYLSK 68 + Sbjct: 66 RIYND 70 >gi|295111496|emb|CBL28246.1| flagellar basal-body rod protein FlgC [Synergistetes bacterium SGP1] Length = 139 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 5/31 (16%), Positives = 15/31 (48%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKS 233 N N + EM M+ ++ + + +++ + Sbjct: 99 NVNLVREMTDMLVASRAYEANLSVVTTAREM 129 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKND 51 S + +A A + T++ N++N +T G ++ F+E++ Sbjct: 5 DSMEVAGSALTAHRLWMDTISSNLANINTTRTLSGGPYKRRVPVFAEMLDRTIGG 59 >gi|157371201|ref|YP_001479190.1| flagellar hook-associated protein FlgK [Serratia proteamaculans 568] gi|157322965|gb|ABV42062.1| flagellar hook-associated protein FlgK [Serratia proteamaculans 568] Length = 548 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 M S N ++ A + LSTV++N+SN + G+ + A + F+ Sbjct: 1 MSNSLINTAMSGLNAAQVALSTVSNNISNYNVAGYNRQTA-----ILAQNGGMSTMNGFI 55 Query: 60 ASGKEYLS 67 +G S Sbjct: 56 GNGVTVTS 63 >gi|22126392|ref|NP_669815.1| flagellar basal body rod protein FlgC [Yersinia pestis KIM 10] gi|45441411|ref|NP_992950.1| flagellar basal body rod protein FlgC [Yersinia pestis biovar Microtus str. 91001] gi|51596009|ref|YP_070200.1| flagellar basal body rod protein FlgC [Yersinia pseudotuberculosis IP 32953] gi|108807171|ref|YP_651087.1| flagellar basal body rod protein FlgC [Yersinia pestis Antiqua] gi|108812485|ref|YP_648252.1| flagellar basal body rod protein FlgC [Yersinia pestis Nepal516] gi|145598612|ref|YP_001162688.1| flagellar basal body rod protein FlgC [Yersinia pestis Pestoides F] gi|149366253|ref|ZP_01888288.1| flagellar basal-body rod protein FlgC [Yersinia pestis CA88-4125] gi|153947032|ref|YP_001401292.1| flagellar basal body rod protein FlgC [Yersinia pseudotuberculosis IP 31758] gi|162420507|ref|YP_001606471.1| flagellar basal body rod protein FlgC [Yersinia pestis Angola] gi|165926046|ref|ZP_02221878.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. F1991016] gi|165938792|ref|ZP_02227347.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. IP275] gi|166010857|ref|ZP_02231755.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqua str. E1979001] gi|166211044|ref|ZP_02237079.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401147|ref|ZP_02306650.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420240|ref|ZP_02311993.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425758|ref|ZP_02317511.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469718|ref|ZP_02334422.1| flagellar basal-body rod protein FlgC [Yersinia pestis FV-1] gi|170024649|ref|YP_001721154.1| flagellar basal body rod protein FlgC [Yersinia pseudotuberculosis YPIII] gi|186895112|ref|YP_001872224.1| flagellar basal body rod protein FlgC [Yersinia pseudotuberculosis PB1/+] gi|218928920|ref|YP_002346795.1| flagellar basal body rod protein FlgC [Yersinia pestis CO92] gi|229896240|ref|ZP_04511410.1| flagellar basal-body rod protein FlgC [Yersinia pestis Pestoides A] gi|229897175|ref|ZP_04512331.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897901|ref|ZP_04513052.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. India 195] gi|229902867|ref|ZP_04517984.1| flagellar basal-body rod protein FlgC [Yersinia pestis Nepal516] gi|270486647|ref|ZP_06203721.1| flagellar basal-body rod protein FlgC [Yersinia pestis KIM D27] gi|294504032|ref|YP_003568094.1| flagellar basal body rod protein [Yersinia pestis Z176003] gi|21959379|gb|AAM86066.1|AE013854_2 cell-proximal portion of basal-body rod protein [Yersinia pestis KIM 10] gi|45436272|gb|AAS61827.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Microtus str. 91001] gi|51589291|emb|CAH20912.1| flagellar basal-body rod protein FlgC [Yersinia pseudotuberculosis IP 32953] gi|108776133|gb|ABG18652.1| flagellar basal-body rod protein FlgC [Yersinia pestis Nepal516] gi|108779084|gb|ABG13142.1| flagellar basal-body rod protein FlgC [Yersinia pestis Antiqua] gi|115347531|emb|CAL20440.1| flagellar basal-body rod protein FlgC [Yersinia pestis CO92] gi|145210308|gb|ABP39715.1| flagellar basal-body rod protein FlgC [Yersinia pestis Pestoides F] gi|149292666|gb|EDM42740.1| flagellar basal-body rod protein FlgC [Yersinia pestis CA88-4125] gi|152958527|gb|ABS45988.1| flagellar basal-body rod protein FlgC [Yersinia pseudotuberculosis IP 31758] gi|162353322|gb|ABX87270.1| flagellar basal-body rod protein FlgC [Yersinia pestis Angola] gi|165913406|gb|EDR32028.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. IP275] gi|165922250|gb|EDR39427.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. F1991016] gi|165990201|gb|EDR42502.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqua str. E1979001] gi|166208224|gb|EDR52704.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqua str. B42003004] gi|166961935|gb|EDR57956.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049536|gb|EDR60944.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055157|gb|EDR64954.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751183|gb|ACA68701.1| flagellar basal-body rod protein FlgC [Yersinia pseudotuberculosis YPIII] gi|186698138|gb|ACC88767.1| flagellar basal-body rod protein FlgC [Yersinia pseudotuberculosis PB1/+] gi|229680314|gb|EEO76413.1| flagellar basal-body rod protein FlgC [Yersinia pestis Nepal516] gi|229688942|gb|EEO81007.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. India 195] gi|229693512|gb|EEO83561.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701163|gb|EEO89192.1| flagellar basal-body rod protein FlgC [Yersinia pestis Pestoides A] gi|262361782|gb|ACY58503.1| flagellar basal body rod protein [Yersinia pestis D106004] gi|262366082|gb|ACY62639.1| flagellar basal body rod protein [Yersinia pestis D182038] gi|270335151|gb|EFA45928.1| flagellar basal-body rod protein FlgC [Yersinia pestis KIM D27] gi|294354491|gb|ADE64832.1| flagellar basal body rod protein [Yersinia pestis Z176003] gi|320015469|gb|ADV99040.1| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 134 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 22/82 (26%) Query: 180 NIPPTPLEDLSGVTVKR----------------------GFLEDSNANSMYEMGQMIHLT 217 + P ++ GV V + G++ N + EM I + Sbjct: 50 QVAAQPGQETGGVRVAQIVDDPSPDRLVYQPGNPLADAKGYVRMPNVDVTGEMVNTISAS 109 Query: 218 QKFNSITTLIDENEKSMLEAIR 239 + + + +++ + ML+ + Sbjct: 110 RSYQANVEVLNTTKSLMLKTLT 131 Score = 39.3 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QR++ A N++N G +R +V F + Q+ Sbjct: 4 LNIFDIAGSALSAQSQRMNVSASNLANADSVTGPDGQPYRAKQVVFQ-----VAAQPGQE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V + + G L Sbjct: 59 TGGVRVAQIVDDPSPDRLVYQPGNPL 84 >gi|325274805|ref|ZP_08140832.1| flagellar basal body rod protein FlgB [Pseudomonas sp. TJI-51] gi|324100050|gb|EGB97869.1| flagellar basal body rod protein FlgB [Pseudomonas sp. TJI-51] Length = 136 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + FS V+ A + Sbjct: 1 MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFSSVLAAETSKQQSGR 60 >gi|300854206|ref|YP_003779190.1| flagellar basal-body rod protein FlgC [Clostridium ljungdahlii DSM 13528] gi|300434321|gb|ADK14088.1| flagellar basal-body rod protein FlgC [Clostridium ljungdahlii DSM 13528] Length = 143 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 12/87 (13%) Query: 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMG 211 G V + + ++ +RE +P+ G++ N N + EM Sbjct: 65 GDVPEGVKVVAIKDDTSPFKREYDPTNPDADA------------SGYVSMPNVNILNEMA 112 Query: 212 QMIHLTQKFNSITTLIDENEKSMLEAI 238 M+ T+ + + + I+ + +A+ Sbjct: 113 DMMVATRAYEANLSAINSEKSMFSKAL 139 Score = 38.9 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%) Query: 1 MQTSFN---IGLAAQLALEQRLSTVADNMSNTDTV-G-----FRTIKVKFSEVVGAIKND 51 M +FN I + A + T+A NM+N +T G +R F E + + Sbjct: 1 MIQAFNTMRISASGLSAERLSMDTIASNMANAETTRGADGQPYRRKVAVFGENLSKALDS 60 Query: 52 IDQ 54 Sbjct: 61 NGN 63 >gi|114562348|ref|YP_749861.1| flagellar hook-associated protein FlgK [Shewanella frigidimarina NCIMB 400] gi|114333641|gb|ABI71023.1| flagellar hook-associated protein FlgK [Shewanella frigidimarina NCIMB 400] Length = 642 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGK 63 NI A + +L ++N++N +T G+ S + + N ++V+ K Sbjct: 6 LNIARTGVQASQAQLGVTSNNIANANTEGYNRQVATQSSLESQRLGNSFYGTGTYVSDVK 65 Query: 64 EYLS 67 + Sbjct: 66 RVYN 69 >gi|332187895|ref|ZP_08389628.1| flagellar basal-body rod protein FlgB [Sphingomonas sp. S17] gi|332012056|gb|EGI54128.1| flagellar basal-body rod protein FlgB [Sphingomonas sp. S17] Length = 115 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 22/47 (46%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 AA QR+ +A N++N T GF+ + F + A++ + Sbjct: 12 AALEVRGQRMGVLASNIANASTPGFKARDIDFKAALAAVEGGQQDQG 58 >gi|319409189|emb|CBI82833.1| Flagellar basal-body rod protein flgC [Bartonella schoenbuchensis R1] Length = 137 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGAIKNDIDQKISF 58 + A RL +A+N++N ++ G +R V F + + +++ Sbjct: 10 QVATTGLSAQSMRLRIIAENLANANSTGKSPGASPYRRKTVSFEAALNPHSDAQGVQVTR 69 Query: 59 VASGK 63 + + K Sbjct: 70 IGNDK 74 Score = 39.3 bits (91), Expect = 0.50, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 20/42 (47%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N NS+ EM M + + + ++ + + + I Sbjct: 92 GYVKYPNVNSIVEMADMREANRSYEANLQVVRQVRDLVSQTI 133 >gi|269836576|ref|YP_003318804.1| flagellar basal-body rod protein FlgB [Sphaerobacter thermophilus DSM 20745] gi|269785839|gb|ACZ37982.1| flagellar basal-body rod protein FlgB [Sphaerobacter thermophilus DSM 20745] Length = 138 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK 55 A L R A+N++N DT F+ +V F E + +D Sbjct: 15 ALDGLALRQRVTANNVANADTPRFKASRVTFEETLRQRLHDEPGG 59 >gi|289208120|ref|YP_003460186.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp. K90mix] gi|288943751|gb|ADC71450.1| flagellar hook-associated protein FlgK [Thioalkalivibrio sp. K90mix] Length = 640 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 IG +A LA ++ + T ++N++N+ T G+ + + + Q + Sbjct: 6 IGTSALLAFQRAIGTTSNNIANSATEGYSRQRTELGNLSPQFLGGSYQGQGVGVDAIRRI 65 Query: 67 SKE 69 S + Sbjct: 66 SDD 68 >gi|253702510|ref|YP_003023699.1| flagellar basal-body rod protein FlgC [Geobacter sp. M21] gi|251777360|gb|ACT19941.1| flagellar basal-body rod protein FlgC [Geobacter sp. M21] Length = 145 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI ++ + + T ++ L+ + Sbjct: 106 NINVVEEMADMITASRSYEANITATQASKSMALKTL 141 Score = 41.6 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 TS +I A A R++ ++ N++N ++ G +R F+ + Sbjct: 5 TSMDISATALAAERTRMNLISSNLANVNSTRTAEGGPYRRKDAVFTATPLKEGASFGAAL 64 Query: 57 SFVASGKEYLSKEV 70 S A + ++ Sbjct: 65 SKAAGARSVQVTQI 78 >gi|332994165|gb|AEF04220.1| flagellar basal-body rod protein FlgB [Alteromonas sp. SN2] Length = 143 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKF-SEVVGAIKNDIDQKISFVASGKEYLSK 68 +A R+ ++ N++N +T G++ + F + A+ Q S K Sbjct: 14 SALAIRTDRMEVISGNLANANTPGYKAKDIDFNKAMESAMSAQDGQHKLGGGSLVRTHDK 73 Query: 69 EVG 71 +G Sbjct: 74 HIG 76 >gi|318605240|emb|CBY26738.1| flagellar basal-body rod protein FlgC [Yersinia enterocolitica subsp. palearctica Y11] Length = 134 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + G VR P + + + +G++ Sbjct: 36 GPDGQPYRAKQVVFQVA-AQPGQETGGVRVAQIIDDPAPDRLVFQPGNPLANAKGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + EM I ++ + + +++ + ML+ + Sbjct: 95 NVDVTGEMVNTISASRSYQANVEVLNTTKSLMLKTLT 131 Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A NM+N G +R +V F + Q+ Sbjct: 4 LNIFDIAGSALSAQSQRLNVSASNMANADSVTGPDGQPYRAKQVVFQ-----VAAQPGQE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V + + G L Sbjct: 59 TGGVRVAQIIDDPAPDRLVFQPGNPL 84 >gi|238751760|ref|ZP_04613248.1| Flagellar basal-body rod protein flgC [Yersinia rohdei ATCC 43380] gi|238710031|gb|EEQ02261.1| Flagellar basal-body rod protein flgC [Yersinia rohdei ATCC 43380] Length = 134 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDS 202 G G+ + +V+ + G VR P + + + +G++ Sbjct: 36 GPDGQPYRAKQVVFQVA-AQPGQETGGVRVAQIVDDPAPDRLVFQPGNPLADAKGYVRMP 94 Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + EM I ++ + + +++ + ML+ + Sbjct: 95 NVDVTGEMVNTISASRSYQANVEVLNTTKSLMLKTLT 131 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QR++ A NM+N G +R +V F + Q+ Sbjct: 4 LNIFDIAGSALSAQSQRMNVSASNMANADSVTGPDGQPYRAKQVVFQ-----VAAQPGQE 58 Query: 56 ISFVASGKEYLSKEVGSFI-STGTEL 80 V + + G L Sbjct: 59 TGGVRVAQIVDDPAPDRLVFQPGNPL 84 >gi|322382305|ref|ZP_08056212.1| flagellar basal body rod protein FlgC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153658|gb|EFX46033.1| flagellar basal body rod protein FlgC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 129 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + EM MI T+ + + T ++ + + +A+ Sbjct: 84 GYVYMPNVDIQKEMVDMISATRSYEANVTALNATKGMITKAL 125 >gi|121596384|ref|YP_988280.1| flagellar basal body rod protein [Acidovorax sp. JS42] gi|120608464|gb|ABM44204.1| flagellar basal body rod protein [Acidovorax sp. JS42] Length = 101 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 20/40 (50%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 M T I + A + RL + A N++N +T GFR V Sbjct: 1 MTTLAAIAQSGLQAAQLRLDSSAHNVANLNTPGFRRQTVD 40 >gi|330972421|gb|EGH72487.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aceris str. M302273PT] Length = 686 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + + Q + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVL---TTASAQIALGQGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|291288218|ref|YP_003505034.1| flagellar basal-body rod protein FlgC [Denitrovibrio acetiphilus DSM 12809] gi|290885378|gb|ADD69078.1| flagellar basal-body rod protein FlgC [Denitrovibrio acetiphilus DSM 12809] Length = 134 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 21/36 (58%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM M+ ++ + + TT++ ++ ++A+ Sbjct: 94 NINPIEEMVNMLEASKSYEANTTVVSTAKQLAMKAL 129 Score = 36.9 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 6/47 (12%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVV 45 + A R+S ++ N++N +T G + V F +V+ Sbjct: 7 LGVAGTGMSAQRIRISAISANLANANTTRTDDGGPYVRQDVIFKQVL 53 >gi|167465320|ref|ZP_02330409.1| flagellar basal body rod protein FlgC [Paenibacillus larvae subsp. larvae BRL-230010] Length = 149 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + EM MI T+ + + T ++ + + +A+ Sbjct: 104 GYVYMPNVDIQKEMVDMISATRSYEANVTALNATKGMITKAL 145 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 16/30 (53%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 F+I +A A R+ ++ N++N D+ Sbjct: 5 NGFDISSSALTAQRLRMDVISSNIANADST 34 >gi|241589577|ref|YP_002979602.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D] gi|240868289|gb|ACS65948.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D] Length = 641 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV--GAIKNDIDQKIS 57 M +S NIG + L + N++N +T G+ +V +E D+ Q + Sbjct: 1 MSSSLLNIGASGLRTAGIHLQVIGSNIANVNTPGYSRQEVVQTENPPHYGGVGDLGQGAN 60 Query: 58 FVASGKEYLSK 68 + Y Sbjct: 61 VATVKRIYDQF 71 >gi|56460255|ref|YP_155536.1| flagellar basal body protein [Idiomarina loihiensis L2TR] gi|56179265|gb|AAV81987.1| Flagellar basal body protein [Idiomarina loihiensis L2TR] Length = 134 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 21/38 (55%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ 54 QR +A+N++N DT G++ + F + + + ++ Sbjct: 21 QRAELIANNIANADTPGYKAKGLDFQQALQQAQRGMEN 58 >gi|261840251|gb|ACY00017.1| flagellar basal body rod protein FlgC [Helicobacter pylori 52] gi|332674370|gb|AEE71187.1| flagellar basal-body rod protein FlgC [Helicobacter pylori 83] Length = 161 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|66046700|ref|YP_236541.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. syringae B728a] gi|63257407|gb|AAY38503.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 [Pseudomonas syringae pv. syringae B728a] Length = 686 Score = 45.8 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + + Q + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVL---TTASAQIALGQGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|255021361|ref|ZP_05293409.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus ATCC 51756] gi|254969224|gb|EET26738.1| Flagellar hook-associated protein flgK [Acidithiobacillus caldus ATCC 51756] Length = 684 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 19/62 (30%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 + L+ + L +N++N +T G+ V S + S + Sbjct: 8 LSSALSGLQVAQDALQVTGNNIANVNTPGYSQESVVQSSLPTTFLGGQYYGNGAQVSSVQ 67 Query: 65 YL 66 Sbjct: 68 RA 69 >gi|217965192|ref|YP_002350870.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes HCC23] gi|217334462|gb|ACK40256.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes HCC23] gi|307570249|emb|CAR83428.1| flagellar basal-body rod protein [Listeria monocytogenes L99] Length = 133 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 L+ V++N++N +T F+ + F E G+ Q + G Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESFGSSLRASGQN----------SIESAG 61 Query: 72 SFISTG 77 + T Sbjct: 62 NLTKTN 67 >gi|301168115|emb|CBW27701.1| flagellar basal-body rod protein [Bacteriovorax marinus SJ] Length = 146 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 22/43 (51%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ + N M EM MI ++ + + ++ + ++A+ Sbjct: 99 QGYVAYPDINVMEEMANMISASRAYEANINAMNTTKNMAMKAL 141 Score = 40.0 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQK 55 TS I + A ++R+++++ N++N T G +R +V F + + Sbjct: 4 LTSLKISSSGLAANKKRMASISSNIANAQTTRTAEGGPYRRKEVVFGS---EPARETFSE 60 Query: 56 ISFVASGKEYLSKEVGSFISTGTE 79 I G++ + + IST Sbjct: 61 ILEGELGEKAQTVQATEVISTNRP 84 >gi|108563932|ref|YP_628248.1| flagellar basal body rod protein FlgC [Helicobacter pylori HPAG1] gi|188528350|ref|YP_001911037.1| flagellar basal body rod protein FlgC [Helicobacter pylori Shi470] gi|217033829|ref|ZP_03439254.1| hypothetical protein HP9810_877g33 [Helicobacter pylori 98-10] gi|107837705|gb|ABF85574.1| flagellar basal-body rod protein [Helicobacter pylori HPAG1] gi|188144590|gb|ACD49007.1| flagellar basal body rod protein FlgC [Helicobacter pylori Shi470] gi|216943727|gb|EEC23170.1| hypothetical protein HP9810_877g33 [Helicobacter pylori 98-10] gi|308062841|gb|ADO04729.1| flagellar basal body rod protein FlgC [Helicobacter pylori Cuz20] gi|315585965|gb|ADU40346.1| flagellar basal-body rod protein FlgC [Helicobacter pylori 35A] gi|317013372|gb|ADU83980.1| flagellar basal body rod protein FlgC [Helicobacter pylori Lithuania75] gi|317179760|dbj|BAJ57548.1| flagellar basal body rod protein FlgC [Helicobacter pylori F30] gi|317181261|dbj|BAJ59047.1| flagellar basal body rod protein FlgC [Helicobacter pylori F32] Length = 161 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|323697455|ref|ZP_08109367.1| protein of unknown function DUF1078 domain protein [Desulfovibrio sp. ND132] gi|323457387|gb|EGB13252.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans ND132] Length = 108 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 2/84 (2%) Query: 150 QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYE 209 IA M + G + G + +E SN + E Sbjct: 18 VSANNIANMNTDGFRAGAVSLESGPGGQGVEVASITESTAPGAFING--VETSNTDVGRE 75 Query: 210 MGQMIHLTQKFNSITTLIDENEKS 233 M MI ++ F + TT I +E+ Sbjct: 76 MVDMIVTSRAFEANTTFIRASEEM 99 Score = 42.0 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 9/67 (13%) Query: 9 LAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSK 68 ++A AL A+N++N +T GFR GA+ + V S Sbjct: 6 VSALSALSTVQEVSANNIANMNTDGFRA---------GAVSLESGPGGQGVEVASITEST 56 Query: 69 EVGSFIS 75 G+FI+ Sbjct: 57 APGAFIN 63 >gi|221635454|ref|YP_002523330.1| flagellar hook-associated protein FlgK [Thermomicrobium roseum DSM 5159] gi|221158038|gb|ACM07156.1| flagellar hook-associated protein FlgK [Thermomicrobium roseum DSM 5159] Length = 468 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 + +A ++ + T N++N +T GF +V Sbjct: 4 RALETAFRGLMAQQRVVDTANHNIANANTPGFARQRVS 41 Score = 37.7 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 14/39 (35%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + EM +I Q + + I ++ + I + Sbjct: 426 VSLDEEMANLIKYQQAYGAAARAITAVDEMLDRIINGMG 464 >gi|90408066|ref|ZP_01216237.1| flagellar hook-associated protein 1 FlgK [Psychromonas sp. CNPT3] gi|90310823|gb|EAS38937.1| flagellar hook-associated protein 1 FlgK [Psychromonas sp. CNPT3] Length = 693 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 M F IGL+ + + L+T N++N +T G+ V+ Sbjct: 1 MADLFQIGLSGIHSSQASLATTGHNIANINTKGYSRQSVE 40 >gi|152975155|ref|YP_001374672.1| flagellar basal body rod protein FlgB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023907|gb|ABS21677.1| flagellar basal-body rod protein FlgB [Bacillus cytotoxicus NVH 391-98] Length = 135 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 21/39 (53%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKN 50 L + +T+++N+SN +T G++ V FSE + Sbjct: 12 MNYLVTKRNTISNNISNANTPGYKAQDVTFSEQMQMSNE 50 >gi|196247642|ref|ZP_03146344.1| flagellar basal-body rod protein FlgB [Geobacillus sp. G11MC16] gi|196212426|gb|EDY07183.1| flagellar basal-body rod protein FlgB [Geobacillus sp. G11MC16] Length = 129 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 R +ADN++N DT G++ V+F + ++ + + S++ Sbjct: 14 GLRYASLRQQAIADNIANVDTPGYKAKDVRFQAELNRALQLEAKRTNPNHF--PFRSEQN 71 Query: 71 GSFISTGTE 79 G I T Sbjct: 72 GKIIVTANA 80 >gi|289666044|ref|ZP_06487625.1| flagellar basal body rod protein FlgB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670503|ref|ZP_06491578.1| flagellar basal body rod protein FlgB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 133 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 1 MQTSFNIGL----AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M + F+ L A EQR+ +A N+SN DT G++ + F + + + + D + Sbjct: 1 MSSPFSSFLGVHGDALALREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSAQGEQDGGL 60 Query: 57 SFVASGKEY 65 K Y Sbjct: 61 MQTTDAKHY 69 >gi|70731826|ref|YP_261568.1| flagellar basal body rod protein FlgB [Pseudomonas fluorescens Pf-5] gi|68346125|gb|AAY93731.1| flagellar basal-body rod protein FlgB [Pseudomonas fluorescens Pf-5] Length = 155 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A +R +A+N++N DT ++ + FS V+ Sbjct: 21 MSISFDKALGIHEQALGFRAKRAEVLANNIANADTPNYKARDLDFSAVLAEQNQKAQNGT 80 Query: 57 SFVASGKEYLSKEVG 71 + + G Sbjct: 81 FALNMTNNRHIEAQG 95 >gi|312792644|ref|YP_004025567.1| flagellar basal-body rod protein flgb [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179784|gb|ADQ39954.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor kristjanssonii 177R1B] Length = 133 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 17 QRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +R +++N++N DT G++ + F + N Sbjct: 20 KRNEIISNNIANADTPGYKVKDLNFEAFLQKSLNQ 54 >gi|312621565|ref|YP_004023178.1| flagellar basal-body rod protein flgb [Caldicellulosiruptor kronotskyensis 2002] gi|312202032|gb|ADQ45359.1| flagellar basal-body rod protein FlgB [Caldicellulosiruptor kronotskyensis 2002] Length = 133 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 6/31 (19%), Positives = 16/31 (51%) Query: 21 TVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +++N++N DT G++ + F + + Sbjct: 24 IISNNIANADTPGYKAKDLNFEAFLQRSLDQ 54 >gi|167576660|ref|ZP_02369534.1| flagellar basal-body rod protein FlgC [Burkholderia thailandensis TXDOH] Length = 138 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 17/106 (16%) Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 P IF + +GE +G + + + V + P PL D G Sbjct: 47 PVFASIFQLDAQGE--PRGAAVQVLDVVKSTEPLRKVHQ---------PGHPLADDEGNV 95 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + N N + EM M+ ++ +++ ++ LE ++ Sbjct: 96 LYP------NVNPVEEMTDMLSASRAYSTNVEVLGRVNSMQLELLK 135 Score = 36.9 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 10/83 (12%) Query: 6 NIGLAAQLALEQRLSTVADNMSNT--------DTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 I +A A RL+T+A N++N T +R K F+ + + + Sbjct: 8 QIAGSAMSAQTVRLNTIASNLANADAASGAEDST--YRARKPVFASIFQLDAQGEPRGAA 65 Query: 58 FVASGKEYLSKEVGSFISTGTEL 80 ++ + G L Sbjct: 66 VQVLDVVKSTEPLRKVHQPGHPL 88 >gi|220905030|ref|YP_002480342.1| hypothetical protein Ddes_1767 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869329|gb|ACL49664.1| protein of unknown function DUF1078 domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 133 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID---QKIS 57 + TS +G +A ++ A N++N T GF + ++ +D Q+ Sbjct: 4 INTSMQLGASAMNTHSWGMAVSAHNVANVSTPGFEPQRAVYATGPAGQGVRLDAVLQRNG 63 Query: 58 FVASGKEYLSKEV 70 V +G + Sbjct: 64 PVGTGGTAYNAAQ 76 >gi|57238273|ref|YP_178646.1| flagellar basal body rod protein FlgC [Campylobacter jejuni RM1221] gi|57167077|gb|AAW35856.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni RM1221] gi|315057945|gb|ADT72274.1| Flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni S3] Length = 164 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM +I T+ + + + + AI Sbjct: 124 NVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAI 159 Score = 40.4 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%) Query: 11 AQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 A R++ ++ N++N +T G +R +V F Sbjct: 13 GLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFK 50 >gi|86153269|ref|ZP_01071473.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612733|ref|YP_001000227.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. jejuni 81-176] gi|167005182|ref|ZP_02270940.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. jejuni 81-176] gi|85842995|gb|EAQ60206.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250029|gb|EAQ72987.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 81-176] Length = 164 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM +I T+ + + + + AI Sbjct: 124 NVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAI 159 Score = 40.4 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%) Query: 11 AQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 A R++ ++ N++N +T G +R +V F Sbjct: 13 GLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFK 50 >gi|229918625|ref|YP_002887271.1| flagellar basal-body rod protein FlgC [Exiguobacterium sp. AT1b] gi|229470054|gb|ACQ71826.1| flagellar basal-body rod protein FlgC [Exiguobacterium sp. AT1b] Length = 142 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 6/41 (14%), Positives = 23/41 (56%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 G+++ N + + EM ++ T+ + + ++ ++ +++A Sbjct: 96 GYVQMPNVDLLKEMVDLMGATRSYEANIAAMNASKAMLVKA 136 Score = 43.9 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M SF+I +A + R+ TV+ N++N T Sbjct: 3 MFDSFHISASALTSQRLRMDTVSANIANAQTT 34 >gi|152989404|ref|YP_001349644.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa PA7] gi|150964562|gb|ABR86587.1| flagellar hook-associated protein FlgK [Pseudomonas aeruginosa PA7] Length = 682 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 2/77 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M +IGL+ + L+ N++N T G+ V + Sbjct: 1 MSDLLSIGLSGLGTSQTWLTVTGHNITNVKTPGYSRQSAIQQTQVPQFSGAGYMGSGSQI 60 Query: 59 VASGKEYLSKEVGSFIS 75 V + G + Sbjct: 61 VDVRRLASDFLTGQLRN 77 >gi|262276410|ref|ZP_06054219.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP 101886] gi|262220218|gb|EEY71534.1| flagellar hook-associated protein FlgK [Grimontia hollisae CIP 101886] Length = 625 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFS--EVVGAIKNDIDQKISFVASG 62 +G L +++L+T N+SN +T G+ V+ + N Q + A Sbjct: 6 LTLGSQGVLTAQRQLNTTGHNISNVNTDGYSRQSVEQRANDSAYWSANQWGQGVHAAAVR 65 Query: 63 KEYLSKEVGSFISTGTEL 80 + Y V + T + L Sbjct: 66 RNYDKFAVNEYNITTSAL 83 >gi|15646165|ref|NP_208349.1| flagellar basal body rod protein FlgC [Helicobacter pylori 26695] gi|217031711|ref|ZP_03437215.1| hypothetical protein HPB128_155g24 [Helicobacter pylori B128] gi|298737153|ref|YP_003729683.1| flagellar basal-body rod protein FlgC [Helicobacter pylori B8] gi|2314741|gb|AAD08598.1| flagellar basal-body rod protein (flgC) [Helicobacter pylori 26695] gi|216946558|gb|EEC25158.1| hypothetical protein HPB128_155g24 [Helicobacter pylori B128] gi|298356347|emb|CBI67219.1| flagellar basal-body rod protein FlgC [Helicobacter pylori B8] Length = 161 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|330953732|gb|EGH53992.1| flagellar hook-associated protein FlgK [Pseudomonas syringae Cit 7] Length = 686 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + + Q + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVL---TTASAQIALGQGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|317011794|gb|ADU85541.1| flagellar basal body rod protein FlgC [Helicobacter pylori SouthAfrica7] Length = 161 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|317010250|gb|ADU80830.1| flagellar basal body rod protein FlgC [Helicobacter pylori India7] Length = 161 Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|308173581|ref|YP_003920286.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus amyloliquefaciens DSM 7] gi|307606445|emb|CBI42816.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus amyloliquefaciens DSM 7] gi|328553487|gb|AEB23979.1| flagellar basal body rod protein FlgC [Bacillus amyloliquefaciens TA208] gi|328911722|gb|AEB63318.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus amyloliquefaciens LL3] Length = 150 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 25/42 (59%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N + + EM ++ T+ + + T ++ ++ +L+A+ Sbjct: 105 GYVQKPNVDPLKEMVDLVSSTRSYEANVTALNASKGMLLKAL 146 Score = 43.5 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 17/89 (19%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKV-------KFSEVV 45 S NI +A A R+ V+ N++N DT G +R V FS ++ Sbjct: 5 QSLNISGSALTAQRVRMDVVSSNLANMDTTRAKQVNGEWVPYRRKLVSLQSGGESFSSLL 64 Query: 46 GAIKNDIDQKISFVASGKEYLSKEVGSFI 74 + N I + V + + Sbjct: 65 NSKMNGIGSAGNGVKVSAVTEDPSAFNLV 93 >gi|226313073|ref|YP_002772967.1| flagellar basal-body rod protein FlgB [Brevibacillus brevis NBRC 100599] gi|226096021|dbj|BAH44463.1| flagellar basal-body rod protein FlgB [Brevibacillus brevis NBRC 100599] Length = 136 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 15/87 (17%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 + A R T+A+N++N DT F++ +V F + N A Sbjct: 13 SLDAATLRHRTIANNLANIDTPQFKSQQVIFESFLQDELNARAGNGKLEAYRTNQRHLPF 72 Query: 71 GS---------------FISTGTELDF 82 G+ ++G ++D Sbjct: 73 GNAGVAVPQVVSNPNNFIQNSGNDVDL 99 >gi|197104256|ref|YP_002129633.1| flagellar hook-associated protein [Phenylobacterium zucineum HLK1] gi|196477676|gb|ACG77204.1| flagellar hook-associated protein [Phenylobacterium zucineum HLK1] Length = 700 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 + A + L V+DN++N +T G+ V +V Sbjct: 7 LQTAASGLNAAQASLRAVSDNIANVNTPGYVRKAVVQQPLV 47 Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 15/142 (10%) Query: 102 RDGRFKVTDDGSL-----VSASGKYPVLDMASVP-IQIPQKDEIFNVGEKGEISQKGKVI 155 R GRF+V G+L A GK ++P I+ + + G+++ + + Sbjct: 554 RAGRFQVD--GTLDADPTRLALGKLDFSGGFTLPAIRPGDGRGALALSQAGDVATRFQAA 611 Query: 156 ATMGLYSVDMSQGFVRRE-----NSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEM 210 ++G ++ +S+ N+ + + L+ T +R +E N E+ Sbjct: 612 GSLGQVNMTVSRYASEFGGSIGRNAASAETRKESAAAVLNEATARRQSVEG--VNLDEEL 669 Query: 211 GQMIHLTQKFNSITTLIDENEK 232 M Q FN+ ++ + Sbjct: 670 VNMTTYQQAFNASARMVQAAKD 691 >gi|254932010|ref|ZP_05265369.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes HPB2262] gi|290894007|ref|ZP_06556982.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL J2-071] gi|290556453|gb|EFD89992.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes FSL J2-071] gi|293583562|gb|EFF95594.1| flagellar basal-body rod protein FlgB [Listeria monocytogenes HPB2262] gi|332311134|gb|EGJ24229.1| Flagellar basal-body rod protein FlgB [Listeria monocytogenes str. Scott A] Length = 133 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 L+ V++N++N +T F+ + F E G+ Q + G Sbjct: 12 LNYLQTANQVVSNNIANANTPNFKASEASFEESFGSSLRASGQN----------SIESAG 61 Query: 72 SFISTG 77 + T Sbjct: 62 NLTKTN 67 >gi|297380732|gb|ADI35619.1| flagellar basal-body rod protein FlgC [Helicobacter pylori v225d] Length = 161 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|261838846|gb|ACX98612.1| flagellar basal-body rod protein [Helicobacter pylori 51] Length = 161 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|255597140|ref|XP_002536705.1| Flagellar hook-associated protein, putative [Ricinus communis] gi|223518821|gb|EEF25678.1| Flagellar hook-associated protein, putative [Ricinus communis] Length = 439 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 6 NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ 54 L+ LA + L+TV+ N++N T G+ V ++ A +D Sbjct: 5 YNALSGALAAQAALNTVSQNLANVQTPGYTRQGV----LLQATASDPGT 49 >gi|254470324|ref|ZP_05083728.1| flagellar basal-body rod protein FlgC [Pseudovibrio sp. JE062] gi|211960635|gb|EEA95831.1| flagellar basal-body rod protein FlgC [Pseudovibrio sp. JE062] Length = 136 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G+++ N N++ EM M T+ + + ++ + M + + Sbjct: 90 GYVKMPNVNTLVEMADMQEATRSYEANLNVVKSSRSMMQKTL 131 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 9/56 (16%) Query: 1 MQ--TSFNIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFSEVVGA 47 M S I + A R+ +A+N++N D+ G +R FS A Sbjct: 1 MDFIKSMFIAASGLKAQTGRMRVIAENIANADSTGQTPGEDPYRRKVPTFSSSFDA 56 >gi|219670132|ref|YP_002460567.1| flagellar basal-body rod protein FlgB [Desulfitobacterium hafniense DCB-2] gi|219540392|gb|ACL22131.1| flagellar basal-body rod protein FlgB [Desulfitobacterium hafniense DCB-2] Length = 133 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 19/113 (16%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 + A R +A+N++N DT F+ V F ++G ++ + + + Sbjct: 16 SLDASSLRYKVLANNVANVDTPDFKRSDVDFDLLLGEAMGQTGGELPLKVTSERH----- 70 Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA--SGKY 121 TG ++ +G DG V D +V+ +G Y Sbjct: 71 --LQKTG------FNSSG--VVQD-QGTTYRNDGN-NVDIDKEMVNVAENGIY 111 >gi|330943214|gb|EGH45621.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. pisi str. 1704B] Length = 686 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + + Q + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVL---TTASAQIALGQGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|258592553|emb|CBE68862.1| putative Flagellar hook-associated protein 1 (HAP1) [NC10 bacterium 'Dutch sediment'] Length = 466 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFV 59 Q S + A A + + T N++N +T GF +V + V + + V Sbjct: 5 QASLTMARKALQAQQVAIQTTGHNIANANTPGFTRQRVDLTPAVPFSLGSVGSLGTGV 62 >gi|229029418|ref|ZP_04185501.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1271] gi|228731877|gb|EEL82776.1| Flagellar hook-associated protein FlgK [Bacillus cereus AH1271] Length = 432 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISF 58 +N L+ LA + L T N+SN T G+ V F V + + +Q+I + Sbjct: 6 YNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQAVNFGSVGASNGHTPEQRIGY 59 >gi|114566382|ref|YP_753536.1| hypothetical protein Swol_0846 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337317|gb|ABI68165.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 138 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A R +ADN++N DT F+ +V F E + ++ + ++ E Sbjct: 17 AMDVGTLRNDVIADNIANADTPKFKRREVIFEEKMKKALEGTTDQLGLNLTNSRHIQME- 75 Query: 71 GSFISTGTELDF 82 G +D Sbjct: 76 ------GNNMDI 81 >gi|297538902|ref|YP_003674671.1| flagellar hook-associated protein FlgK [Methylotenera sp. 301] gi|297258249|gb|ADI30094.1| flagellar hook-associated protein FlgK [Methylotenera sp. 301] Length = 650 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 M +IG +A A + LST N++N T G+ V + A ++ Sbjct: 1 MADILSIGKSALAAAQVGLSTTGHNIANASTPGYSRQVV-----IQAAAQAQSSGSGYIG 55 Query: 61 SGKEYLSKE 69 G E S Sbjct: 56 QGTEVASIT 64 >gi|288958048|ref|YP_003448389.1| flagellar basal-body rod protein [Azospirillum sp. B510] gi|288910356|dbj|BAI71845.1| flagellar basal-body rod protein [Azospirillum sp. B510] Length = 136 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVG-------FRTIKVKFS 42 S + + A RL +++N++N T +R V F Sbjct: 5 KSMAVSASGMKAQGTRLKVISENLANASTTAETPGDLPYRRKTVVFK 51 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 12/84 (14%) Query: 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMI 214 + + + VD+ + +R P P D G + N NS+ E M Sbjct: 60 VDKVRVAKVDVDKSDFQR------RYDPSHPSADADGYVLMP------NVNSVVEAMDMR 107 Query: 215 HLTQKFNSITTLIDENEKSMLEAI 238 + + + + ID + + I Sbjct: 108 EAQRSYEANLSAIDTARQMLTRTI 131 >gi|227112527|ref|ZP_03826183.1| flagellar hook-associated protein FlgK [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 564 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M N ++ + LSTV++N+SN G+ + + + + I ++ Sbjct: 1 MSNLINTAMSGLKGAQVALSTVSNNISNQAVTGYSRQNAILEQAISSSTSAGYIGNGVNV 60 Query: 59 VASGKEY 65 V+ ++Y Sbjct: 61 VSINRQY 67 >gi|187934928|ref|YP_001885009.1| flagellar hook-associated protein FlgK [Clostridium botulinum B str. Eklund 17B] gi|187723081|gb|ACD24302.1| flagellar hook-associated protein FlgK [Clostridium botulinum B str. Eklund 17B] Length = 604 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVASG 62 F + + ++T + N++N +TVGF + + G + + V +G Sbjct: 8 FTVAKRGLNVQQGAINTTSHNIANANTVGFSRQRAVATTTRPFGGMSRFDTCTVGQVGTG 67 Query: 63 KEYLSKE 69 E S E Sbjct: 68 AEISSIE 74 Score = 40.4 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 5/48 (10%) Query: 199 LED-----SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 LE S + EM +I +++ ++ ++ + I + Sbjct: 555 LEMQKLSVSGVSLDEEMTNLIQFQHAYSANAKVVSTVDELLDVVINGL 602 >gi|153951079|ref|YP_001398445.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. doylei 269.97] gi|152938525|gb|ABS43266.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. doylei 269.97] Length = 164 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM +I T+ + + + + AI Sbjct: 124 NVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAI 159 Score = 40.4 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 6/38 (15%) Query: 11 AQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 A R+S ++ N++N +T G +R +V F Sbjct: 13 GLSAQRFRMSVISSNIANVNTTRTAEGGPYRRREVIFK 50 >gi|23016761|ref|ZP_00056514.1| COG1558: Flagellar basal body rod protein [Magnetospirillum magnetotacticum MS-1] Length = 138 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 G++ N N + EM M + + + +I + M Sbjct: 93 GYVLAPNVNPLIEMMDMREAQRSYEANLQVIQTSRTMMDRT 133 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 14/29 (48%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTD 30 S I + QRL +++N++N D Sbjct: 7 MNSSKIAKSGLKVQSQRLRVISENLANAD 35 >gi|330975982|gb|EGH76048.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 686 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + + Q + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVL---TTASAQIALGQGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|315127347|ref|YP_004069350.1| flagellar hook-associated [Pseudoalteromonas sp. SM9913] gi|315015861|gb|ADT69199.1| flagellar hook-associated [Pseudoalteromonas sp. SM9913] Length = 668 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 22/52 (42%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQ 54 NI + A + L T + N++N +T G+ + +F+ ++ Sbjct: 4 NLLNIANSGIRANSELLQTTSKNIANVNTEGYVRERTEFTTMIDNQVGRGQT 55 >gi|239996708|ref|ZP_04717232.1| Flagellar hook-associated protein [Alteromonas macleodii ATCC 27126] Length = 680 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 20/36 (55%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 F++ + A + L T ++N++N +T G+ + + Sbjct: 7 FSLATSGVNASSKLLQTTSNNIANVNTPGYVRERTE 42 >gi|86151838|ref|ZP_01070052.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 260.94] gi|148925898|ref|ZP_01809585.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414808|ref|YP_001482064.1| flagellar basal body rod protein FlgC [Campylobacter jejuni subsp. jejuni 81116] gi|205355383|ref|ZP_03222154.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283954185|ref|ZP_06371710.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 414] gi|283955949|ref|ZP_06373439.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 1336] gi|315124050|ref|YP_004066054.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841467|gb|EAQ58715.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 260.94] gi|145844884|gb|EDK21988.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385772|gb|ABV52087.1| flagellar basal-body rod protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346617|gb|EDZ33249.1| flagellar basaL body rod protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792609|gb|EFC31388.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 1336] gi|283794464|gb|EFC33208.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 414] gi|284925790|gb|ADC28142.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni IA3902] gi|315017772|gb|ADT65865.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931721|gb|EFV10676.1| flagellar basal-body rod protein FlgC [Campylobacter jejuni subsp. jejuni 327] Length = 164 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 15/36 (41%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM +I T+ + + + + AI Sbjct: 124 NVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAI 159 Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%) Query: 11 AQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 A R++ ++ N++N +T G +R +V F Sbjct: 13 GLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFK 50 >gi|315648139|ref|ZP_07901240.1| flagellar basal-body rod protein FlgC [Paenibacillus vortex V453] gi|315276785|gb|EFU40128.1| flagellar basal-body rod protein FlgC [Paenibacillus vortex V453] Length = 149 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + EM M+ T+ + + T I+ ++ +++A+ Sbjct: 104 GYVFMPNVDITKEMVDMLAATRSYEANVTAINASKAMIMKAL 145 Score = 42.3 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 14/94 (14%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV------G----FRTIKVKF----SEVVG 46 + SF I +A A R+ ++ N++N +T G +R V F G Sbjct: 3 ISNSFGINASALTAQRLRMDVISSNIANAETTRARIENGQAVPYRRKTVVFQPQQESFEG 62 Query: 47 AIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 ++ + + + + ++ Sbjct: 63 LLRAQMSGQDAGQGVKVAAVQEDQAPLKRVYNPT 96 >gi|308173580|ref|YP_003920285.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus amyloliquefaciens DSM 7] gi|307606444|emb|CBI42815.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus amyloliquefaciens DSM 7] gi|328911721|gb|AEB63317.1| flagellar component of cell-proximal portion of basal-body rod [Bacillus amyloliquefaciens LL3] Length = 129 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 18 RLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------QKISFVASGKEYLSKEVG 71 + + +N++N DT ++ KV F ++ ++++ + + F SG +Y G Sbjct: 21 KQKVITNNIANIDTPNYKAKKVSFRNLLDQETSNLEAVKTDYRHVDFTDSGADYSIVSSG 80 Query: 72 --SFISTGTELDF 82 S+ G +D Sbjct: 81 DTSYQQNGNNVDI 93 >gi|254780090|ref|YP_003058197.1| flagellar basal body rod protein FlgC [Helicobacter pylori B38] gi|254002003|emb|CAX30262.1| Flagellar basal-body rod protein FlgC [Helicobacter pylori B38] Length = 161 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.5 bits (89), Expect = 0.84, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANVNTTRTSEGGPYRRQEAVFK 49 >gi|167614835|ref|ZP_02383470.1| flagellar basal-body rod protein FlgC [Burkholderia thailandensis Bt4] Length = 125 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 17/106 (16%) Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 P IF + +GE +G + + + V + P PL D G Sbjct: 34 PVFASIFQLDAQGE--PRGAAVQVLDVVKSTEPLRKVHQ---------PGHPLADAEGNV 82 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + N N + EM M+ ++ +++ ++ LE ++ Sbjct: 83 LYP------NVNPVEEMTDMLSASRAYSTNVEVLGRVNSMQLELLK 122 >gi|153953775|ref|YP_001394540.1| flagellar basal body rod protein FlgB [Clostridium kluyveri DSM 555] gi|219854391|ref|YP_002471513.1| hypothetical protein CKR_1048 [Clostridium kluyveri NBRC 12016] gi|146346656|gb|EDK33192.1| FlgB [Clostridium kluyveri DSM 555] gi|219568115|dbj|BAH06099.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 133 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI---SFVASGKEYLS 67 A +R ++DN++N +T G++ V F E + +++ K + G Y Sbjct: 19 GLDAASERSKAISDNLANVNTAGYKRKYVTFEESLKDSVYNLELKTDDEKHIKIGSNYGQ 78 Query: 68 -----KEVGSFISTGTELDF 82 S G +D Sbjct: 79 IETKTDSSNSMREDGNNVDM 98 >gi|224370789|ref|YP_002604953.1| FlgC [Desulfobacterium autotrophicum HRM2] gi|223693506|gb|ACN16789.1| FlgC [Desulfobacterium autotrophicum HRM2] Length = 165 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSE 43 S I A +++ +A+N++N DT G +R V F + Sbjct: 4 LDSMKISATGLAAHRTKMNVIAENLANVDTTRTADGGPYRRKMVVFKD 51 Score = 36.9 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G++ N + + E+ MI + + + T I + +L+A+ + Sbjct: 120 GYVAMPNVDHLTEVADMIVAKRSYEASITAISNTKSMILKAL-ELG 164 >gi|48429388|gb|AAT42462.1| FlgE [Escherichia coli B] Length = 166 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 84 LEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVL-DMASVPIQIPQKDEIFN 141 + + +F L G + +R+G+FK+ ++ +LV+ G P I Q N Sbjct: 1 ISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGLQLTGYPATGTPPTIQQGANPTN 60 Query: 142 VG 143 + Sbjct: 61 IS 62 >gi|22127321|ref|NP_670744.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM 10] gi|45442802|ref|NP_994341.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Microtus str. 91001] gi|108809049|ref|YP_652965.1| flagellar hook-associated protein FlgK [Yersinia pestis Antiqua] gi|108810754|ref|YP_646521.1| flagellar hook-associated protein FlgK [Yersinia pestis Nepal516] gi|145597823|ref|YP_001161899.1| flagellar hook-associated protein FlgK [Yersinia pestis Pestoides F] gi|150260243|ref|ZP_01916971.1| lateral flagellar hook-associated protein 1 [Yersinia pestis CA88-4125] gi|162420194|ref|YP_001604841.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola] gi|165925087|ref|ZP_02220919.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. F1991016] gi|165939060|ref|ZP_02227612.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. IP275] gi|166008985|ref|ZP_02229883.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. E1979001] gi|166212172|ref|ZP_02238207.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. B42003004] gi|167399689|ref|ZP_02305213.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419324|ref|ZP_02311077.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425178|ref|ZP_02316931.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466331|ref|ZP_02331035.1| flagellar hook-associated protein FlgK [Yersinia pestis FV-1] gi|218927918|ref|YP_002345793.1| flagellar hook-associated protein FlgK [Yersinia pestis CO92] gi|229837414|ref|ZP_04457577.1| Flagellar hook-associated protein flgK [Yersinia pestis Pestoides A] gi|229840629|ref|ZP_04460788.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842820|ref|ZP_04462972.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Orientalis str. India 195] gi|229900951|ref|ZP_04516075.1| Flagellar hook-associated protein flgK [Yersinia pestis Nepal516] gi|270487666|ref|ZP_06204740.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27] gi|294502794|ref|YP_003566856.1| flagellar hook-associated protein [Yersinia pestis Z176003] gi|21960402|gb|AAM86995.1|AE013948_3 putative flagellar hook-associated protein [Yersinia pestis KIM 10] gi|45437668|gb|AAS63218.1| putative flagellar hook-associated protein [Yersinia pestis biovar Microtus str. 91001] gi|108774402|gb|ABG16921.1| flagellar hook-associated protein [Yersinia pestis Nepal516] gi|108780962|gb|ABG15020.1| putative flagellar hook-associated protein [Yersinia pestis Antiqua] gi|115346529|emb|CAL19406.1| putative flagellar hook-associated protein [Yersinia pestis CO92] gi|145209519|gb|ABP38926.1| flagellar hook-associated protein [Yersinia pestis Pestoides F] gi|149289651|gb|EDM39728.1| lateral flagellar hook-associated protein 1 [Yersinia pestis CA88-4125] gi|162353009|gb|ABX86957.1| flagellar hook-associated protein FlgK [Yersinia pestis Angola] gi|165913016|gb|EDR31641.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. IP275] gi|165923287|gb|EDR40438.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. F1991016] gi|165992324|gb|EDR44625.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. E1979001] gi|166206918|gb|EDR51398.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. B42003004] gi|166963318|gb|EDR59339.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052193|gb|EDR63601.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055941|gb|EDR65722.1| flagellar hook-associated protein FlgK [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682290|gb|EEO78382.1| Flagellar hook-associated protein flgK [Yersinia pestis Nepal516] gi|229690087|gb|EEO82144.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Orientalis str. India 195] gi|229696995|gb|EEO87042.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705537|gb|EEO91547.1| Flagellar hook-associated protein flgK [Yersinia pestis Pestoides A] gi|262360826|gb|ACY57547.1| flagellar hook-associated protein [Yersinia pestis D106004] gi|262364771|gb|ACY61328.1| flagellar hook-associated protein [Yersinia pestis D182038] gi|270336170|gb|EFA46947.1| flagellar hook-associated protein FlgK [Yersinia pestis KIM D27] gi|294353253|gb|ADE63594.1| flagellar hook-associated protein [Yersinia pestis Z176003] gi|320016705|gb|ADW00277.1| Flagellar hook-associated protein flgK [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 453 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + A + L+ + N++N T G+ + + S + + ++ G L Sbjct: 6 TAFSGMQATQAHLNATSMNIANMHTPGYSRQRAEQSAIGADGQGGVNAGNGVNVDGIRRL 65 Query: 67 SKE 69 S++ Sbjct: 66 SQQ 68 >gi|289679013|ref|ZP_06499903.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. syringae FF5] Length = 560 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + + Q + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVL---TTASAQIALGQGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|296124187|ref|YP_003631965.1| flagellar basal-body rod protein FlgC [Planctomyces limnophilus DSM 3776] gi|296016527|gb|ADG69766.1| flagellar basal-body rod protein FlgC [Planctomyces limnophilus DSM 3776] Length = 137 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 18/32 (56%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 M + +I + +A R+ T+A N++N +T Sbjct: 1 MFHTLDISTSGLIAQRTRMDTIAGNIANVNTT 32 Score = 40.8 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 16/40 (40%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + E + ++ + + T ++ + + R + Sbjct: 98 NINVVTEFVNAMEASRAYEANVTTMEVTKDMIQNTFRLLG 137 >gi|188589591|ref|YP_001920169.1| flagellar hook-associated protein FlgK [Clostridium botulinum E3 str. Alaska E43] gi|251779172|ref|ZP_04822092.1| flagellar hook-associated protein FlgK [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499872|gb|ACD53008.1| flagellar hook-associated protein FlgK [Clostridium botulinum E3 str. Alaska E43] gi|243083487|gb|EES49377.1| flagellar hook-associated protein FlgK [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 604 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKISFVASG 62 F + + ++T + N++N +TVGF + + G + + V +G Sbjct: 8 FTVAKRGLNVQQGAINTTSHNIANANTVGFSRQRAVATTTRPFGGMSRFDTCTVGQVGTG 67 Query: 63 KEYLSKE 69 E S E Sbjct: 68 AEISSIE 74 Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 5/48 (10%) Query: 199 LED-----SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 LE S + EM +I +++ +I ++ + I + Sbjct: 555 LEMQRLSVSGVSLDEEMTNLIQFQHAYSANAKVISTVDELLDVVINGL 602 >gi|120554031|ref|YP_958382.1| flagellar basal body rod protein FlgC [Marinobacter aquaeolei VT8] gi|120323880|gb|ABM18195.1| flagellar basal-body rod protein FlgC [Marinobacter aquaeolei VT8] Length = 149 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 N N + EM M+ ++ F +++ KSM++ I + Sbjct: 109 NVNVVEEMADMMSSSRSFQMNVDVMNTA-KSMMQRILTLG 147 Score = 42.3 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDT------VGFRTIKVKFSEVVGAIKNDIDQKI 56 F+I + A RL+T A N++N +T +R K F+ + A+ N Q Sbjct: 5 NIFDIAGSGMTAQSLRLNTTASNIANAETASSSTDTTYRARKPVFAAIQQAMLNPDQQGF 64 Query: 57 SFVASGKEYLSKEVGSFISTGTEL 80 + V + + EL Sbjct: 65 GMGSEEGPGAGVRVEGIVESDAEL 88 >gi|34497157|ref|NP_901372.1| flagellar basal-body rod protein flgC [Chromobacterium violaceum ATCC 12472] gi|34103014|gb|AAQ59377.1| flagellar basal-body rod protein flgC [Chromobacterium violaceum ATCC 12472] Length = 134 Score = 45.4 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 P PL D G SN N++ EM M+ T+ F + ++ + K+M + + + Sbjct: 78 PGNPLADADGNVFY------SNVNAVEEMTDMLSATRAFQTNVEVLAKV-KTMQQDLLKL 130 Query: 242 A 242 Sbjct: 131 G 131 Score = 36.6 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 6/72 (8%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTV------GFRTIKVKFSEVVGAIKNDIDQKISFVA 60 I +A A RL+TVA N++N DT +R K FS + + Sbjct: 9 IAGSAMTAQTVRLNTVASNIANADTASGAEQSAYRGRKPVFSSQMQGEGMGVQVLDVVQN 68 Query: 61 SGKEYLSKEVGS 72 + E G+ Sbjct: 69 QEPVRKAHEPGN 80 >gi|1857438|gb|AAC45656.1| FlgC [Proteus mirabilis] Length = 134 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 23/108 (21%) Query: 142 VGEKGEIS-----------QKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLS 190 VG GE G+ I + + V R E P P D Sbjct: 35 VGPDGEPYRAKQVVFQVNAPAGQEIGGVHVTQVVDDPTPFRME------YQPGNPFADEK 88 Query: 191 GVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM I ++ + + +++ + M + + Sbjct: 89 ------GYVRKPNVDVVGEMINTISASRSYQANVEVMNTAKSLMQKTL 130 Score = 35.0 bits (80), Expect = 8.3, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 11/72 (15%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I +A A QRL+ A NM+N VG +R +V F + Q+I Sbjct: 7 FDISGSALSAQSQRLNVSASNMANVDSVVGPDGEPYRAKQVVFQ-----VNAPAGQEIGG 61 Query: 59 VASGKEYLSKEV 70 V + Sbjct: 62 VHVTQVVDDPTP 73 >gi|148546703|ref|YP_001266805.1| flagellar basal body rod protein FlgB [Pseudomonas putida F1] gi|148510761|gb|ABQ77621.1| flagellar basal-body rod protein FlgB [Pseudomonas putida F1] gi|313497758|gb|ADR59124.1| FlgB [Pseudomonas putida BIRD-1] Length = 136 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + FS V+ A + Sbjct: 1 MSISFDKALGIHEKALGFRAQRAEVLANNIANADTPNYKARDMDFSSVLAAETSKQQGGR 60 >gi|237731005|ref|ZP_04561486.1| flagellar basal body rod protein FlgC [Citrobacter sp. 30_2] gi|226906544|gb|EEH92462.1| flagellar basal body rod protein FlgC [Citrobacter sp. 30_2] Length = 134 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D + G+++ N + + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAN------GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSLMLKTLT 131 Score = 35.0 bits (80), Expect = 9.8, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFS 42 F+I +A A +RL+ A NM+N D+V +R +V F Sbjct: 4 LNIFDIAGSALTAQSKRLNVAASNMANADSVSGPDGQPYRAKQVVFQ 50 >gi|223038370|ref|ZP_03608664.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Campylobacter rectus RM3267] gi|222880227|gb|EEF15314.1| flagellar basal-body rod protein FlgG (Distal rod protein) [Campylobacter rectus RM3267] Length = 41 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 19/39 (48%) Query: 201 DSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 SN + + Q+I + + F + + I +++ + ++ Sbjct: 1 MSNVDLSRSLTQLIVVQRGFQANSKTITTSDEMLNTLLQ 39 >gi|82777311|ref|YP_403660.1| flagellar basal body rod protein FlgC [Shigella dysenteriae Sd197] gi|309788141|ref|ZP_07682747.1| flagellar basal-body rod protein FlgC [Shigella dysenteriae 1617] gi|81241459|gb|ABB62169.1| cell-proximal portion of basal-body rod [Shigella dysenteriae Sd197] gi|308923993|gb|EFP69494.1| flagellar basal-body rod protein FlgC [Shigella dysenteriae 1617] Length = 134 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D G+++ N + + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAK------GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.9 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F+I +A A QRL+ A N++N G +R +V F Sbjct: 4 LNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRAKQVVFQ 50 >gi|109899396|ref|YP_662651.1| flagellar hook-associated protein FlgK [Pseudoalteromonas atlantica T6c] gi|109701677|gb|ABG41597.1| flagellar hook-associated protein FlgK [Pseudoalteromonas atlantica T6c] Length = 709 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 +I + A Q LST +N++N +T G+ + F + + + Sbjct: 8 LSIARSGVEASNQLLSTTGNNIANVNTEGYVRERTNFVAELTGGVGQFTTERVMNTFAQN 67 Query: 65 YLSKEVGSFIS 75 L ++ + Sbjct: 68 QLRRDTTNLAE 78 >gi|306820110|ref|ZP_07453758.1| flagellar basal-body rod protein FlgB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551888|gb|EFM39831.1| flagellar basal-body rod protein FlgB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 133 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAI--KNDIDQKISFVASGKEYLS 67 A A R +++ N++N +T ++ V+F E + A K ++ + + + S Sbjct: 13 TALDAYSMRNESISSNLANVNTPNYKRKYVRFEEYLTASYDKQNLKGATTNIRHIEIPSS 72 Query: 68 KEVGSFISTGTE 79 F++T Sbjct: 73 TSKAPFLATDNS 84 >gi|109948140|ref|YP_665368.1| flagellar basal body rod protein FlgC [Helicobacter acinonychis str. Sheeba] gi|109715361|emb|CAK00369.1| flagellar basal-body rod protein [Helicobacter acinonychis str. Sheeba] Length = 161 Score = 45.4 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|308064340|gb|ADO06227.1| flagellar basal body rod protein FlgC [Helicobacter pylori Sat464] Length = 161 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|209545589|ref|YP_002277818.1| flagellar hook-associated protein FlgK [Gluconacetobacter diazotrophicus PAl 5] gi|209533266|gb|ACI53203.1| flagellar hook-associated protein FlgK [Gluconacetobacter diazotrophicus PAl 5] Length = 503 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 +S + + +E +L +++N+SN+ T G+ + + S V + + S Sbjct: 4 LSSLSTATSGLNGIEYQLGVLSNNVSNSSTTGYVSETAEVSSAVAGGVGVGIKIGTTQLS 63 Query: 62 GKEYL-------SKEVGSFISTGTEL 80 + L + +V S +T L Sbjct: 64 VNKALMAALYGQNAQVASLTATNNSL 89 >gi|146311244|ref|YP_001176318.1| flagellar basal body rod protein FlgC [Enterobacter sp. 638] gi|145318120|gb|ABP60267.1| flagellar basal-body rod protein FlgC [Enterobacter sp. 638] Length = 134 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D + G+++ N + + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAN------GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSMMLKTLT 131 Score = 36.6 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFSEVVGAIKNDIDQK 55 F+I +A A QRL+ A NM+N G +R +V F K Sbjct: 4 LNIFDIAGSALTAQSQRLNVAASNMANADSVTGPDGQPYRAKQVVFQVDAAPGGATGGVK 63 Query: 56 ISFVASGK 63 +S V + Sbjct: 64 VSSVVESQ 71 >gi|77918798|ref|YP_356613.1| flagellar basal-body rod protein FlgC [Pelobacter carbinolicus DSM 2380] gi|77544881|gb|ABA88443.1| flagellar basal-body rod protein FlgC [Pelobacter carbinolicus DSM 2380] Length = 143 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 T+ + +A A RL+ ++ N++N T G +R V F ++ + Q + Sbjct: 5 TAMQVSASALSAQRTRLNVISGNLANVGTTRTPEGGPYRKRDVVFQSSQNMFEDHLQQAM 64 Query: 57 SFVASGKEYLSKEVGS 72 G E + S Sbjct: 65 DTNVQGVEVSRIQPNS 80 Score = 44.6 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G L N N M E+ M+ + + + + I ++ +A+ Sbjct: 98 GMLTLPNINVMEEVVDMMTAMRSYEANISAIKSAQRMATKAL 139 >gi|332140543|ref|YP_004426281.1| flagellar basal-body rod protein FlgB [Alteromonas macleodii str. 'Deep ecotype'] gi|327550565|gb|AEA97283.1| flagellar basal-body rod protein FlgB [Alteromonas macleodii str. 'Deep ecotype'] Length = 144 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 24/42 (57%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND 51 +A +R+ ++ N++N +T G++ + F++ + + ++ Sbjct: 14 SALKIRTERMEVISGNLANANTPGYKARDIDFNKAMQSAMHE 55 >gi|258514001|ref|YP_003190223.1| flagellar basal-body rod protein FlgC [Desulfotomaculum acetoxidans DSM 771] gi|257777706|gb|ACV61600.1| flagellar basal-body rod protein FlgC [Desulfotomaculum acetoxidans DSM 771] Length = 140 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 19/36 (52%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM M+ + + + T ++ ++ ++A+ Sbjct: 100 NINIVNEMVNMMAARRAYEANATALEASKSMAMKAL 135 Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 14 ALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A L +++N++N +T G ++ FS+ + ++ + + V + Sbjct: 16 AERLWLDIISNNIANLNTTRTAKGGPYKRQMPVFSQRLQSVVDSAKTRAGGVEVNRVVQD 75 Query: 68 KEV 70 Sbjct: 76 NAP 78 >gi|126697816|ref|YP_001086713.1| flagellar basal-body rod protein [Clostridium difficile 630] gi|115249253|emb|CAJ67066.1| Flagellar basal-body rod protein FlgB [Clostridium difficile] Length = 105 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 23/44 (52%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVV 45 +++I A R T+A+N++N +T G++ + F E + Sbjct: 1 MNTYDIIKMGLDATNLRSQTIANNIANINTEGYKRHYITFEETL 44 >gi|309779453|ref|ZP_07674214.1| flagellar hook-associated protein FlgK [Ralstonia sp. 5_7_47FAA] gi|308921694|gb|EFP67330.1| flagellar hook-associated protein FlgK [Ralstonia sp. 5_7_47FAA] Length = 645 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKIS 57 M +S NIG + + L +N++N T G+ + +E + A + Q + Sbjct: 1 MSSSLLNIGASGLRVADINLQVTGNNIANASTPGYSRQEAVQTENIPLYAGVGYLGQGAN 60 Query: 58 FVASGKEYLSK 68 + Y Sbjct: 61 VTTVKRIYDQF 71 >gi|308185345|ref|YP_003929478.1| flagellar basal body rod protein FlgC [Helicobacter pylori SJM180] gi|308061265|gb|ADO03161.1| flagellar basal body rod protein FlgC [Helicobacter pylori SJM180] Length = 161 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFR 49 >gi|117923397|ref|YP_864014.1| flagellar hook-associated protein FlgK [Magnetococcus sp. MC-1] gi|117607153|gb|ABK42608.1| flagellar hook-associated protein FlgK [Magnetococcus sp. MC-1] Length = 588 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 NI L+ + LS+V+ N++N +T G+ + GA++ + D VA Sbjct: 13 LNISKTGLLSNQYALSSVSQNIANVNTAGYSRQTAALTSNQGALRGNTDGIGGGVAVS 70 Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 4/37 (10%), Positives = 16/37 (43%) Query: 202 SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 S + E+ ++ + F + + ++ ++ + I Sbjct: 548 SGVSLEEELTDLMRFQRAFQASSKMVVTADELLQSVI 584 >gi|210135737|ref|YP_002302176.1| flagellar basal body rod protein FlgC [Helicobacter pylori P12] gi|210133705|gb|ACJ08696.1| flagellar basal-body rod protein FlgC [Helicobacter pylori P12] Length = 161 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 37.7 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFK 49 >gi|229544390|ref|ZP_04433448.1| flagellar basal-body rod protein FlgB [Bacillus coagulans 36D1] gi|229324875|gb|EEN90552.1| flagellar basal-body rod protein FlgB [Bacillus coagulans 36D1] Length = 129 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 8/80 (10%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI--------SFVASG 62 A R +++N++N DT ++ V F V+ N I S S Sbjct: 14 ALQYASLRQKVISNNIANADTPNYKAQDVSFKNVLEDSVNAISATRTDPRHFRFSAGDSS 73 Query: 63 KEYLSKEVGSFISTGTELDF 82 E +++ ++ S G +D Sbjct: 74 SEIVTESGTTYNSNGNSVDI 93 >gi|187926948|ref|YP_001893293.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12J] gi|241665277|ref|YP_002983636.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D] gi|187728702|gb|ACD29866.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12J] gi|240867304|gb|ACS64964.1| flagellar hook-associated protein FlgK [Ralstonia pickettii 12D] Length = 645 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 1 MQTSF-NIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKIS 57 M +S NIG + L +N++N +T G+ + +E + A + Q + Sbjct: 1 MSSSLLNIGATGLRVADINLQVTGNNIANANTPGYSRQEAVQTENIPLYAGVGYLGQGAN 60 Query: 58 FVASGKEYLSK 68 + Y Sbjct: 61 VTTVKRIYDQF 71 >gi|322421737|ref|YP_004200960.1| flagellar basal-body rod protein FlgC [Geobacter sp. M18] gi|320128124|gb|ADW15684.1| flagellar basal-body rod protein FlgC [Geobacter sp. M18] Length = 145 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 16/36 (44%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 N N + EM MI ++ + + T + L+ + Sbjct: 106 NINVVEEMADMITASRSYEANITATQAAKSMALKTL 141 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEVVGAIKNDIDQKI 56 TS +I +A A R++ ++ N++N ++ G +R F+ + Sbjct: 5 TSMDISASALAAERTRMNLISSNLANVNSTRTAEGGPYRRKDAVFTATPVTEGKSFGAAL 64 Query: 57 SFVASGKEYLSKEV 70 S + ++ Sbjct: 65 SRANEARSVQVTQI 78 >gi|120613370|ref|YP_973048.1| flagellar basal body rod protein [Acidovorax citrulli AAC00-1] gi|120591834|gb|ABM35274.1| flagellar basal body rod protein [Acidovorax citrulli AAC00-1] Length = 100 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLS 67 A + +L T A N++N +T GFR V+ S V + + V Sbjct: 11 GLRAAQLQLDTSAHNVANMNTEGFRRQTVEQSAVPDQGGVEARVGRAAVEGASPEAD 67 >gi|85710161|ref|ZP_01041226.1| flagellar proximal rod protein [Erythrobacter sp. NAP1] gi|85688871|gb|EAQ28875.1| flagellar proximal rod protein [Erythrobacter sp. NAP1] Length = 117 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 10 AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 AA QR+ +A N++N T GF+ + F+ + A Q+ + A G+ Sbjct: 11 AALELRSQRMGVIASNIANAATPGFKARDMDFNAALNARLE--TQRGAPAAFGEP 63 >gi|94312675|ref|YP_585884.1| flagellar hook-filament junction protein [Cupriavidus metallidurans CH34] gi|93356527|gb|ABF10615.1| flagellar hook-filament junction protein [Cupriavidus metallidurans CH34] Length = 631 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISFV 59 + FNIGL+ + L+T N SN T G+ + G Q S V Sbjct: 1 MSLFNIGLSGLNVAQNALTTTGHNFSNAATPGYTRQSTIIASAGGQFTGSGFFGQGSSTV 60 Query: 60 ASGKEYLSKEVGSFIS 75 + Y G + Sbjct: 61 TVQRVYDGFLTGQLRT 76 >gi|283833632|ref|ZP_06353373.1| flagellar basal-body rod protein FlgC [Citrobacter youngae ATCC 29220] gi|291071315|gb|EFE09424.1| flagellar basal-body rod protein FlgC [Citrobacter youngae ATCC 29220] Length = 134 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 182 PPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 P PL D + G+++ N + + EM + ++ + + +++ + ML+ + Sbjct: 80 PGNPLADAN------GYVKMPNVDVVGEMVNTMSASRSYQANVEVLNTVKSLMLKTLT 131 Score = 35.4 bits (81), Expect = 6.9, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNT-DTVG-----FRTIKVKFS 42 F+I +A A +RL+ A NM+N G +R +V F Sbjct: 4 LNIFDIAGSALTAQSKRLNVAASNMANADSVTGPDGQPYRAKQVVFQ 50 >gi|15612531|ref|NP_224184.1| flagellar basal body rod protein FlgC [Helicobacter pylori J99] gi|4156087|gb|AAD07040.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99] Length = 161 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFR 49 >gi|212634354|ref|YP_002310879.1| flagellar basal body rod protein [Shewanella piezotolerans WP3] gi|212555838|gb|ACJ28292.1| Flagellar basal body rod protein [Shewanella piezotolerans WP3] Length = 640 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVA 60 +I LA + +L+ ++N++N +T G+ S + + N+ ++V+ Sbjct: 3 MDLLSIARTGVLASQSQLAITSNNIANANTDGYNRQVASQSALDSQRMGNEFYGAGTYVS 62 Query: 61 SGKEYLSK 68 K + Sbjct: 63 DVKRVYND 70 >gi|162147480|ref|YP_001601941.1| flagellar hook-associated protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786057|emb|CAP55639.1| putative flagellar hook-associated protein [Gluconacetobacter diazotrophicus PAl 5] Length = 503 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 +S + + +E +L +++N+SN+ T G+ + + S V + + S Sbjct: 4 LSSLSTATSGLNGIEYQLGVLSNNVSNSSTTGYVSETAEVSSAVAGGVGVGIKIGTTQLS 63 Query: 62 GKEYL-------SKEVGSFISTGTEL 80 + L + +V S +T L Sbjct: 64 VNKALMAALYGQNAQVASLTATNNSL 89 >gi|149195179|ref|ZP_01872270.1| flagellar basal-body rod protein C [Caminibacter mediatlanticus TB-2] gi|149134731|gb|EDM23216.1| flagellar basal-body rod protein C [Caminibacter mediatlanticus TB-2] Length = 165 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 15/39 (38%) Query: 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 N N + EM +I T+ + + + AI + Sbjct: 125 NINPVIEMADLIEATRSYQANVAAFQSAKNMAQSAINIL 163 Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFSEV 44 SF+I A R++ +++N++N +T G +R +V F + Sbjct: 4 LNSFDISGYGLSAQRFRINIISENIANANTTRTPEGGPYRRKEVIFKAI 52 >gi|32476538|ref|NP_869532.1| flagellar hook-associated protein [Rhodopirellula baltica SH 1] gi|32447084|emb|CAD76893.1| probable flagellar hook-associated protein [Rhodopirellula baltica SH 1] Length = 584 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 A A + L V +N++N +T G+ +++ + V + ++ Q A+G + + Sbjct: 35 ALDAAQIGLQVVGNNIANANTEGYIRQRLEQTPAVAYRQGNLIQGHGVRATGVVQVIDQQ 94 Score = 35.0 bits (80), Expect = 8.2, Method: Composition-based stats. Identities = 6/32 (18%), Positives = 13/32 (40%) Query: 204 ANSMYEMGQMIHLTQKFNSITTLIDENEKSML 235 N E +MI + F + + +I + + Sbjct: 548 VNIDEESIKMISYQRAFQASSRVISTAAEMLD 579 >gi|330875990|gb|EGH10139.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 686 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + +I + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVM---TTASAQINIGLGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|300114801|ref|YP_003761376.1| flagellar basal-body rod protein FlgC [Nitrosococcus watsonii C-113] gi|299540738|gb|ADJ29055.1| flagellar basal-body rod protein FlgC [Nitrosococcus watsonii C-113] Length = 137 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 168 GFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLI 227 G V P P+ + +G N NS+ EM MI ++ + + + Sbjct: 69 GVVESGAPLQQEYAPDHPMANEAGYIFHP------NVNSIEEMANMISASRSYQNNVEMA 122 Query: 228 DENEKSMLEAIR 239 + +++ +L ++ Sbjct: 123 NTSKQLLLRTLQ 134 Score = 37.3 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVG------FRTIKVKFSEVVGAIKNDIDQKISF 58 F+I A A RL+T A N++N D+V +R + F+ ++ + Sbjct: 7 FDIAGTAMSAQTLRLNTTASNLANADSVSSSIHQTYRARQPVFATLLDELNPAAPAGGVQ 66 Query: 59 V 59 V Sbjct: 67 V 67 >gi|15596274|ref|NP_249768.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa PAO1] gi|107100522|ref|ZP_01364440.1| hypothetical protein PaerPA_01001547 [Pseudomonas aeruginosa PACS2] gi|116049006|ref|YP_792192.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa UCBPP-PA14] gi|218892959|ref|YP_002441828.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa LESB58] gi|254234213|ref|ZP_04927536.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa C3719] gi|254239435|ref|ZP_04932757.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa 2192] gi|296390559|ref|ZP_06880034.1| flagellar basal body rod protein FlgB [Pseudomonas aeruginosa PAb1] gi|313106032|ref|ZP_07792291.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa 39016] gi|9946993|gb|AAG04466.1|AE004539_8 flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa PAO1] gi|115584227|gb|ABJ10242.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa UCBPP-PA14] gi|126166144|gb|EAZ51655.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa C3719] gi|126192813|gb|EAZ56876.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa 2192] gi|218773187|emb|CAW28999.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa LESB58] gi|310878793|gb|EFQ37387.1| flagellar basal-body rod protein FlgB [Pseudomonas aeruginosa 39016] Length = 135 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 1 MQTSFNIGLA----AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M SF+ L A QR +A+N++N DT ++ + F+ V+ K+ + Sbjct: 1 MSISFDRALGIHQQALSFRAQRAEVLANNLANADTPNYKARDLDFAAVLAEQKDKAAKGT 60 Query: 57 SFVASGKEYLSKEVG 71 + E G Sbjct: 61 FATRTTNERHIAAEG 75 >gi|83716764|ref|YP_438387.1| flagellar basal-body rod protein FlgC [Burkholderia thailandensis E264] gi|257141420|ref|ZP_05589682.1| flagellar basal-body rod protein FlgC [Burkholderia thailandensis E264] gi|83650589|gb|ABC34653.1| flagellar basal-body rod protein FlgC [Burkholderia thailandensis E264] Length = 138 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 17/106 (16%) Query: 134 PQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 P IF + +GE +G + + + V + P PL D G Sbjct: 47 PVFASIFQLDAQGE--PRGAAVQVLDVVKSTEPLRKVHQ---------PGHPLADAEGNV 95 Query: 194 VKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 + N N + EM M+ ++ +++ ++ LE ++ Sbjct: 96 LYP------NVNPVEEMTDMLSASRAYSTNVEVLGRVNSMQLELLK 135 Score = 36.9 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 10/83 (12%) Query: 6 NIGLAAQLALEQRLSTVADNMSNT--------DTVGFRTIKVKFSEVVGAIKNDIDQKIS 57 I +A A RL+T+A N++N T +R K F+ + + + Sbjct: 8 QIAGSAMSAQTVRLNTIASNLANADAASGAEDST--YRARKPVFASIFQLDAQGEPRGAA 65 Query: 58 FVASGKEYLSKEVGSFISTGTEL 80 ++ + G L Sbjct: 66 VQVLDVVKSTEPLRKVHQPGHPL 88 >gi|2494517|sp|P70910|FLGB_BORHE RecName: Full=Flagellar basal-body rod protein flgB gi|1621620|gb|AAB51473.1| flagellar rod protein FlgB [Borrelia hermsii] Length = 135 Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 12 QLALEQRLSTVADNMSNTDTVGFRTIKVKFS-EVVGAIKNDIDQKISFVASGKEYLS 67 L R S +ADN++N DT F+ KV F E+ AI N+ +S + + L+ Sbjct: 15 LDVLSLRQSVIADNIANVDTPNFKRSKVTFEAELERAILNERASNLSLIRGNDKNLN 71 >gi|229826299|ref|ZP_04452368.1| hypothetical protein GCWU000182_01671 [Abiotrophia defectiva ATCC 49176] gi|229789169|gb|EEP25283.1| hypothetical protein GCWU000182_01671 [Abiotrophia defectiva ATCC 49176] Length = 131 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 7/79 (8%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA-------SGK 63 A A R + +++N++N DT G++ V+F + VA G Sbjct: 16 AADASWLRNNLISNNIANNDTPGYKRKDVQFESYLAMELIRGGSLRHRVANADLDRLDGI 75 Query: 64 EYLSKEVGSFISTGTELDF 82 Y S+ + G +D Sbjct: 76 AYTDYASLSYRADGNNVDI 94 >gi|208435438|ref|YP_002267104.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|308183713|ref|YP_003927840.1| flagellar basal body rod protein FlgC [Helicobacter pylori PeCan4] gi|208433367|gb|ACI28238.1| flagellar basal-body rod protein [Helicobacter pylori G27] gi|308065898|gb|ADO07790.1| flagellar basal body rod protein FlgC [Helicobacter pylori PeCan4] Length = 161 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFR 49 >gi|188579864|ref|YP_001923309.1| flagellar basal body rod protein FlgB [Methylobacterium populi BJ001] gi|179343362|gb|ACB78774.1| flagellar basal body rod protein [Methylobacterium populi BJ001] Length = 129 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 1 MQTSFNIG-LAAQLA--LEQRLSTVADNMSNTDTVGFRTIKVK-FSEVVGAIKNDIDQKI 56 M T + LA+Q A L R +T+A N++N +T G++ V F++V+ D+ Sbjct: 1 MTTGVYLFDLASQHARYLATRQATIAGNVANANTPGYKARDVVPFAQVLARTGLDMSSTA 60 Query: 57 SF 58 + Sbjct: 61 NT 62 >gi|50120645|ref|YP_049812.1| flagellar hook-associated protein FlgK [Pectobacterium atrosepticum SCRI1043] gi|49611171|emb|CAG74617.1| flagellar hook-associated protein 1 [Pectobacterium atrosepticum SCRI1043] Length = 568 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKND--IDQKISF 58 M N ++ + LSTV++N+SN G+ + + + + I ++ Sbjct: 1 MSNLINTAMSGLKGAQIALSTVSNNISNQAVTGYSRQNAILEQAISSSTSAGYIGNGVNV 60 Query: 59 VASGKEY 65 V+ ++Y Sbjct: 61 VSINRQY 67 >gi|21242730|ref|NP_642312.1| flagellar basal body rod protein FlgB [Xanthomonas axonopodis pv. citri str. 306] gi|78047589|ref|YP_363764.1| flagellar basal body rod protein FlgB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294625271|ref|ZP_06703910.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664588|ref|ZP_06729929.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21108206|gb|AAM36848.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|78036019|emb|CAJ23710.1| flagellar basal body protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292600445|gb|EFF44543.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605645|gb|EFF48955.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 133 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 1 MQTSFNIGL----AAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKI 56 M + F+ L A EQR+ +A N+SN DT G++ + F + + + + D + Sbjct: 1 MSSPFSSFLGVHGDALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSAQGEQDGGL 60 Query: 57 SFVASGKEY 65 K Y Sbjct: 61 LQTTDAKHY 69 >gi|56460254|ref|YP_155535.1| flagellar basal body rod protein [Idiomarina loihiensis L2TR] gi|56179264|gb|AAV81986.1| Flagellar basal body rod protein [Idiomarina loihiensis L2TR] Length = 150 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 196 RGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 G++ N N+M EM MI ++ + + + D K+M + + + Sbjct: 103 SGYIYRPNVNTMEEMANMISASRSYQTNVQVADTA-KTMTQRLLRLG 148 >gi|330967097|gb|EGH67357.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. actinidiae str. M302091] Length = 686 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + +I + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVM---TTASAQINIGLGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|28869148|ref|NP_791767.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato str. DC3000] gi|213967575|ref|ZP_03395723.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato T1] gi|301385720|ref|ZP_07234138.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato Max13] gi|302060067|ref|ZP_07251608.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato K40] gi|302134826|ref|ZP_07260816.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852388|gb|AAO55462.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato str. DC3000] gi|213927876|gb|EEB61423.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tomato T1] gi|331017018|gb|EGH97074.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 686 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + +I + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVM---TTASAQINIGLGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|89895708|ref|YP_519195.1| hypothetical protein DSY2962 [Desulfitobacterium hafniense Y51] gi|89335156|dbj|BAE84751.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 129 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 19/113 (16%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEV 70 + A R +A+N++N DT F+ V F ++G ++ + + + Sbjct: 12 SLDASSLRYKVLANNVANVDTPDFKRSDVDFDLLLGEAMGQTGGELPLKVTSERH----- 66 Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSA--SGKY 121 TG + + +G DG V D +V+ +G Y Sbjct: 67 --LQKTG------FDSSG---VVQAQGTTYRNDGN-NVDIDKEMVNVAENGIY 107 >gi|330961205|gb|EGH61465.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. maculicola str. ES4326] Length = 686 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + + Q + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVL---TTASAQIALGQGVGYLGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|289651639|ref|ZP_06482982.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aesculi str. 2250] Length = 686 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + +I + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVM---TTASAQINIGLGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|146335607|gb|ABQ23406.1| FlgK [Pseudomonas syringae pv. averrhoi] Length = 686 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + +I + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVM---TTASAQINIGLGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|75675293|ref|YP_317714.1| hypothetical protein Nwi_1100 [Nitrobacter winogradskyi Nb-255] gi|74420163|gb|ABA04362.1| Protein of unknown function DUF1078 [Nitrobacter winogradskyi Nb-255] Length = 622 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ +I ++ A + LS V+ N++N +T G+ + +VV + + + Sbjct: 5 SALSIAMSGLRANQAALSIVSGNVANANTPGYVAQTLVQDQVV---TGGMGSGVRVIGVN 61 Query: 63 KEYLSKEVGSFIS 75 + + + Sbjct: 62 RTLDAYVQSQLRT 74 >gi|317014993|gb|ADU82429.1| flagellar basal body rod protein FlgC [Helicobacter pylori Gambia94/24] Length = 161 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFR 49 >gi|307638243|gb|ADN80693.1| Flagellar basal-body rod protein [Helicobacter pylori 908] gi|325996836|gb|ADZ52241.1| Flagellar basal-body rod protein [Helicobacter pylori 2018] gi|325998428|gb|ADZ50636.1| Flagellar basal-body rod protein [Helicobacter pylori 2017] Length = 161 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 19/44 (43%) Query: 195 KRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 +G++ N N++ EM ++ T+ + + + AI Sbjct: 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156 Score = 38.1 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV----G--FRTIKVKFS 42 +SF+I A R + ++ N++N +T G +R + F Sbjct: 3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFR 49 >gi|296283218|ref|ZP_06861216.1| flagellar hook-associated protein FlgK [Citromicrobium bathyomarinum JL354] Length = 698 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 18/38 (47%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 ++ A + + +V++N++N T G+ +V Sbjct: 5 NILGTAVSGLSASQAGIRSVSNNIANISTPGYARERVS 42 >gi|289627770|ref|ZP_06460724.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866430|gb|EGH01139.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 686 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + +I + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVM---TTASAQINIGLGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|317153716|ref|YP_004121764.1| flagellar basal-body rod protein FlgC [Desulfovibrio aespoeensis Aspo-2] gi|316943967|gb|ADU63018.1| flagellar basal-body rod protein FlgC [Desulfovibrio aespoeensis Aspo-2] Length = 145 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 19/35 (54%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 N + EM M++ T+ + + I+ ++ +A++ Sbjct: 108 NVVEEMTNMMNATRGYEANVQTIESVKQMFNKALQ 142 Score = 38.5 bits (89), Expect = 0.92, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTV 32 T+ +IG + A L+ ++ NM+N T Sbjct: 4 MTALDIGASGLKAQRATLNVISMNMANMRTT 34 >gi|212639570|ref|YP_002316090.1| flagellar basal body rod protein FlgB [Anoxybacillus flavithermus WK1] gi|212561050|gb|ACJ34105.1| Flagellar basal body rod protein FlgB [Anoxybacillus flavithermus WK1] Length = 126 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 10/81 (12%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 +F I + +A+N++N DT F+ V+F + Q + + Sbjct: 6 NTFQILEQGLNYSSLKQKVIANNIANVDTPNFKAKDVQFR-------TEFHQALQAYRTD 58 Query: 63 KEYLSKEVGS---FISTGTEL 80 + + G+ F++T +L Sbjct: 59 PRHFEFKGGTSKFFVTTKNDL 79 >gi|51597631|ref|YP_071822.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis IP 32953] gi|186896765|ref|YP_001873877.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis PB1/+] gi|51590913|emb|CAH22569.1| putative flagellar hook-associated protein [Yersinia pseudotuberculosis IP 32953] gi|186699791|gb|ACC90420.1| flagellar hook-associated protein FlgK [Yersinia pseudotuberculosis PB1/+] Length = 453 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%) Query: 7 IGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYL 66 + A + L+ + N++N T G+ + + S + + ++ G L Sbjct: 6 TAFSGMQATQAHLNATSMNIANMHTPGYSRQRAEQSAIGADGQGGVNAGNGVNVDGIRRL 65 Query: 67 SKE 69 S++ Sbjct: 66 SQQ 68 >gi|302037635|ref|YP_003797957.1| first flagellar hook-filament junction protein FlgK [Candidatus Nitrospira defluvii] gi|300605699|emb|CBK42032.1| First flagellar hook-filament junction protein FlgK [Candidatus Nitrospira defluvii] Length = 464 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%) Query: 5 FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKE 64 F IG A ++ LS N++N T G+ ++ SE + A+ Sbjct: 8 FGIGSNALATFQRALSVTGQNIANVSTPGYSRQEITLSESLPENGQPGQIGTGVTATEIR 67 Query: 65 YLSKE 69 Sbjct: 68 RSVDS 72 Score = 38.9 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 18/40 (45%) Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 E S + E+ ++ + F + + LI +++ + + Sbjct: 422 EVSGVSMDEELINLLKYQRAFEAASKLITTSDEMLQTILT 461 >gi|258513988|ref|YP_003190210.1| flagellar hook-associated protein FlgK [Desulfotomaculum acetoxidans DSM 771] gi|257777693|gb|ACV61587.1| flagellar hook-associated protein FlgK [Desulfotomaculum acetoxidans DSM 771] Length = 430 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 17/37 (45%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVK 40 IG A A + + +N++N +T G+ +V Sbjct: 7 GLEIGKRALQANKTGMDVTGNNVANANTTGYSRQRVN 43 >gi|169827118|ref|YP_001697276.1| flagellar basal body rod protein FlgC [Lysinibacillus sphaericus C3-41] gi|168991606|gb|ACA39146.1| Flagellar basal-body rod protein [Lysinibacillus sphaericus C3-41] Length = 153 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 23/42 (54%) Query: 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAI 238 G++ N + + EM ++ T+ + + T+ + N+ + +A+ Sbjct: 108 GYVNLPNVDPLKEMVDLMSATRSYEANVTVFNANKSMLTKAL 149 Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTV 32 N +A A R+ ++ NM+N DT Sbjct: 6 GMNTTASALTAQRLRMDVISSNMANMDTT 34 >gi|91201245|emb|CAJ74305.1| similar to flagellar hook-associated protein FlgK [Candidatus Kuenenia stuttgartiensis] Length = 653 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 1 MQTS-FNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEV--VGAIKNDIDQKIS 57 M +S IG++ LA ++ + A N+SN +T G+ V + + I Q + Sbjct: 1 MASSDIQIGMSGVLAAQRAMMVSAHNISNANTKGYTKQTVSLATRLPLQTTIGSIGQGVD 60 Query: 58 FVASGKEYLSK 68 V ++ Sbjct: 61 LVKIMRQKDDY 71 Score = 38.1 bits (88), Expect = 0.97, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 17/42 (40%) Query: 200 EDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNI 241 E S N E+ +I Q + + I ++ + + ++ Sbjct: 612 EVSGVNIDEELVTLIRFQQAYQASAKYISTVDRLINTLLNSL 653 >gi|71733906|ref|YP_275555.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. phaseolicola 1448A] gi|298487849|ref|ZP_07005889.1| Flagellar hook-associated protein flgK [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554459|gb|AAZ33670.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157574|gb|EFH98654.1| Flagellar hook-associated protein flgK [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325100|gb|EFW81169.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. glycinea str. B076] Length = 686 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + +I + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVM---TTASAQINIGLGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|257484939|ref|ZP_05638980.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tabaci ATCC 11528] gi|49205098|dbj|BAC75962.2| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tabaci] gi|330986475|gb|EGH84578.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011049|gb|EGH91105.1| flagellar hook-associated protein FlgK [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 686 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 + +IGL+ A ++T+ +N +N DT G+ +V + + +I + ++ + Sbjct: 1 MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVM---TTASAQINIGLGVGYIGT 57 Query: 62 GKEYLS 67 G Sbjct: 58 GTTLSD 63 >gi|85715030|ref|ZP_01046015.1| hypothetical protein NB311A_11677 [Nitrobacter sp. Nb-311A] gi|85698227|gb|EAQ36099.1| hypothetical protein NB311A_11677 [Nitrobacter sp. Nb-311A] Length = 620 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 30/67 (44%) Query: 3 TSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASG 62 ++ +I ++ A + LS V+ N++N +T G+ + ++V + I + Sbjct: 5 SALSIAMSGLRANQAALSIVSGNVANANTPGYVAQTLVQDQIVTGSTGSGVRIIGVSRTL 64 Query: 63 KEYLSKE 69 Y+ + Sbjct: 65 DAYVQSQ 71 >gi|156934442|ref|YP_001438358.1| flagellar basal body rod protein FlgC [Cronobacter sakazakii ATCC BAA-894] gi|156532696|gb|ABU77522.1| hypothetical protein ESA_02273 [Cronobacter sakazakii ATCC BAA-894] Length = 134 Score = 45.0 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 143 GEKGEISQKGK