RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] (243 letters) >3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:48-116,A:315-358) Length = 113 Score = 63.2 bits (154), Expect = 3e-11 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 71 GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129 G+ +TG LD A+ + +F L G + +R+G+FK+ ++ +LV+ G + +A+ Sbjct: 16 GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQG-MQLTVLANF 74 Query: 130 P 130 Sbjct: 75 A 75 >1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:1-46,A:245-281) Length = 83 Score = 56.9 bits (138), Expect = 2e-09 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 80 LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128 LD A+ + +F L G + +R+G+FK+ ++ +LV+ G + +A+ Sbjct: 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQG-MQLTVLAN 50 >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* (A:147-287) Length = 141 Score = 27.2 bits (59), Expect = 2.1 Identities = 8/25 (32%), Positives = 9/25 (36%) Query: 176 GISPNIPPTPLEDLSGVTVKRGFLE 200 G SP +PP P S L Sbjct: 1 GASPAVPPIPGLKESPYWTSTEALA 25 >3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A (A:1-187,A:290-609) Length = 507 Score = 27.1 bits (59), Expect = 2.1 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145 + T G+ G +P+ VP+ I DEIFN G K Sbjct: 431 IRYTTRGTREDREGLFPIGG---VPLGIEIADEIFNNGLK 467 >3lov_A Protoporphyrinogen oxidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} (A:1-41,A:248-300,A:415-475) Length = 155 Score = 26.8 bits (59), Expect = 2.4 Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 21/129 (16%) Query: 6 NIGLAAQLALEQRLS----TVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61 GLAA E+ T+ + + + +++ + AI + D + Sbjct: 14 ITGLAAAYYAERAFPDLNITLLEAG---ERLR---SEIRLETPLLAISRE-DGRYRLKTD 66 Query: 62 GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121 + V + L + + R + + L G Y Sbjct: 67 HGPEYADYVL----------LTIPHPQVVQLLPDAHLPVGHADRIQRVREEVLAQYPGIY 116 Query: 122 PVLDMASVP 130 Sbjct: 117 LAGLAYDGV 125 >2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural genomics; 2.04A {Lactobacillus acidophilus ncfm} (A:) Length = 141 Score = 26.7 bits (59), Expect = 3.0 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 43 EVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTR 102 + + D KI+ + K Y S + + +D+ +L S G++ Sbjct: 53 IWLDKVDPDYPVKIANEQNVKIYTSDFDKTMLGPNMVMDYNAGS---LSLSSDEGLL--- 106 Query: 103 DGRFKVTD 110 DG + + Sbjct: 107 DGSVDIGN 114 >1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp} (A:) Length = 144 Score = 25.7 bits (56), Expect = 6.4 Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 6/48 (12%) Query: 30 DTVGFRTI------KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71 + +R E+ IK F + YL E+G Sbjct: 91 KLIAYRKTLVQQYLLADSGELYRLIKAHQTALQDFPKRIRSYLETELG 138 >2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} (A:176-345) Length = 170 Score = 25.5 bits (56), Expect = 6.5 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%) Query: 44 VVGAIKNDIDQKI--SFVASGKEYLSKEVGSF 73 V G D K +F G+E E+GSF Sbjct: 53 VFGRAYPDSADKTLANFGWGGQENAGAEIGSF 84 >1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix- exchange dimer, transferase; 1.95A {Homo sapiens} (A:57-162) Length = 106 Score = 25.2 bits (55), Expect = 8.8 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242 + + E+ + L Q+ +T+L E +K ML A +A Sbjct: 46 SDLGELINKMKLAQQ-YVMTSLQQEYKKQMLTAAHALA 82 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.132 0.358 Gapped Lambda K H 0.267 0.0595 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,687,245 Number of extensions: 72429 Number of successful extensions: 129 Number of sequences better than 10.0: 1 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 13 Length of query: 243 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 157 Effective length of database: 2,048,819 Effective search space: 321664583 Effective search space used: 321664583 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 53 (24.5 bits)