RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780685|ref|YP_003065098.1| flagellar basal body rod
protein FlgF [Candidatus Liberibacter asiaticus str. psy62]
         (243 letters)



>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
           universal joint, bacterial flagellum, motor protein;
           7.10A {Salmonella enterica subsp} (A:48-116,A:315-358)
          Length = 113

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 71  GSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASV 129
           G+  +TG  LD A+  + +F L    G +  +R+G+FK+ ++ +LV+  G   +  +A+ 
Sbjct: 16  GTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQG-MQLTVLANF 74

Query: 130 P 130
            
Sbjct: 75  A 75


>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural
           protein; 1.80A {Salmonella typhimurium}
           (A:1-46,A:245-281)
          Length = 83

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 80  LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMAS 128
           LD A+  + +F L    G +  +R+G+FK+ ++ +LV+  G   +  +A+
Sbjct: 2   LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQG-MQLTVLAN 50


>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
           oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
           PDB: 1zx9_A* (A:147-287)
          Length = 141

 Score = 27.2 bits (59), Expect = 2.1
 Identities = 8/25 (32%), Positives = 9/25 (36%)

Query: 176 GISPNIPPTPLEDLSGVTVKRGFLE 200
           G SP +PP P    S        L 
Sbjct: 1   GASPAVPPIPGLKESPYWTSTEALA 25


>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate
           complex, phospatase activity, chloride, metal-binding,
           oxidoreductase, secreted; 1.50A {Curvularia inaequalis}
           PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A
           1vng_A 1vnh_A (A:1-187,A:290-609)
          Length = 507

 Score = 27.1 bits (59), Expect = 2.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 106 FKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEK 145
            + T  G+     G +P+     VP+ I   DEIFN G K
Sbjct: 431 IRYTTRGTREDREGLFPIGG---VPLGIEIADEIFNNGLK 467


>3lov_A Protoporphyrinogen oxidase; structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium
           sibiricum} (A:1-41,A:248-300,A:415-475)
          Length = 155

 Score = 26.8 bits (59), Expect = 2.4
 Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 21/129 (16%)

Query: 6   NIGLAAQLALEQRLS----TVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVAS 61
             GLAA    E+       T+ +     + +     +++    + AI  + D +      
Sbjct: 14  ITGLAAAYYAERAFPDLNITLLEAG---ERLR---SEIRLETPLLAISRE-DGRYRLKTD 66

Query: 62  GKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKY 121
                +  V             +       L     + +    R +   +  L    G Y
Sbjct: 67  HGPEYADYVL----------LTIPHPQVVQLLPDAHLPVGHADRIQRVREEVLAQYPGIY 116

Query: 122 PVLDMASVP 130
                    
Sbjct: 117 LAGLAYDGV 125


>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G,
           Fe-S cluster protein, structural genomics; 2.04A
           {Lactobacillus acidophilus ncfm} (A:)
          Length = 141

 Score = 26.7 bits (59), Expect = 3.0
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 43  EVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTR 102
             +  +  D   KI+   + K Y S    + +     +D+        +L S  G++   
Sbjct: 53  IWLDKVDPDYPVKIANEQNVKIYTSDFDKTMLGPNMVMDYNAGS---LSLSSDEGLL--- 106

Query: 103 DGRFKVTD 110
           DG   + +
Sbjct: 107 DGSVDIGN 114


>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics,
           hypothetical cytosolic protein, PSI, protein structure
           initiative; 1.83A {Bacillus subtilis subsp} (A:)
          Length = 144

 Score = 25.7 bits (56), Expect = 6.4
 Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 6/48 (12%)

Query: 30  DTVGFRTI------KVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVG 71
             + +R             E+   IK        F    + YL  E+G
Sbjct: 91  KLIAYRKTLVQQYLLADSGELYRLIKAHQTALQDFPKRIRSYLETELG 138


>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum}
          (A:176-345)
          Length = 170

 Score = 25.5 bits (56), Expect = 6.5
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 44 VVGAIKNDIDQKI--SFVASGKEYLSKEVGSF 73
          V G    D   K   +F   G+E    E+GSF
Sbjct: 53 VFGRAYPDSADKTLANFGWGGQENAGAEIGSF 84


>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four
           helical bundle forming A helix- exchange dimer,
           transferase; 1.95A {Homo sapiens} (A:57-162)
          Length = 106

 Score = 25.2 bits (55), Expect = 8.8
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 205 NSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRNIA 242
           + + E+   + L Q+   +T+L  E +K ML A   +A
Sbjct: 46  SDLGELINKMKLAQQ-YVMTSLQQEYKKQMLTAAHALA 82


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.132    0.358 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,687,245
Number of extensions: 72429
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 13
Length of query: 243
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 157
Effective length of database: 2,048,819
Effective search space: 321664583
Effective search space used: 321664583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.5 bits)