BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] (243 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 493 bits (1270), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/243 (100%), Positives = 243/243 (100%) Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA Sbjct: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60 Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK Sbjct: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120 Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN Sbjct: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180 Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN Sbjct: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240 Query: 241 IAS 243 IAS Sbjct: 241 IAS 243 >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 59.3 bits (142), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 15/137 (10%) Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63 S ++ A R+S V+DN++N DTVG++ + FS +V ++ S+V+ G Sbjct: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSN-----SYVSGGL 60 Query: 64 EYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118 E +K E GS + T + D A++G +F ++ + LTR G F + ++G L + + Sbjct: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120 Query: 119 G----KYPVLDMASVPI 131 G YP L AS P+ Sbjct: 121 GGVLLGYP-LKNASAPL 136 >gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 55.8 bits (133), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 71 GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASGK--YP--VLD 125 G + TG LD AL G WF +E+P + ++ TR G F + G LV+A G P V+ Sbjct: 85 GEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIP 144 Query: 126 MASVPIQIPQKDEIFNV-GEKGEISQKGKV-----IATMGLYSVDMSQGFVRRENSGISP 179 + I++ + +I V G+ + G++ I GL ++ + R + P Sbjct: 145 EETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNI--GDNLLARTSVSGDP 202 Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228 I P +D+ VK+G+LE SN +++ E+ +MI + + + +I+ Sbjct: 203 -IISNP-DDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIE 249 >gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 25.4 bits (54), Expect = 0.82, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%) Query: 28 NTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE-VGSFISTGTELDFALEG 86 N D V F I+ +S ND I F + E++SK+ + S +S G+E+ + Sbjct: 304 NIDNVHF--IQANYSMFHSVYFNDEWSNI-FTVAVPEHISKQDLPSHVSNGSEISQWIRD 360 Query: 87 DAWFALESPRGIILTRD--GRFKVTD 110 D + A + IIL D RF D Sbjct: 361 DVFQAQREGKYIILFADDIDRFSSID 386 >gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 332 Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 115 VSASGKYPVLDMASVPIQIPQKDEIF 140 +S GK V+ +A PI PQK+EI Sbjct: 12 MSGYGKSNVMFLAESPIPQPQKEEIL 37 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 23.5 bits (49), Expect = 4.0, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTI 37 A+L E+R+ +AD +D G+R + Sbjct: 285 AELVREKRIVDIADLRDESDRQGYRVV 311 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 22.3 bits (46), Expect = 7.2, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 74 ISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 I+ G + F LEG + F+ S I + SL+ K + S+ Sbjct: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL--- 723 Query: 134 PQKDEIFNVGEKGEISQKGKVIATM 158 D IF++G KG Q+ K + M Sbjct: 724 ---DTIFSIGRKGISMQRYKGLGEM 745 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.132 0.358 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,653 Number of Sequences: 1233 Number of extensions: 6216 Number of successful extensions: 20 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 10 length of query: 243 length of database: 328,796 effective HSP length: 72 effective length of query: 171 effective length of database: 240,020 effective search space: 41043420 effective search space used: 41043420 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 37 (18.9 bits)